LiteFold/PDB huggingface dataset:
PDB entry 7r91: cryo-EM structure of the rigor state wild type myosin-15-F-actin complex
Classification: MOTOR PROTEIN
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2021-06-28
Authors: Gong, R., Reynolds, M.J., Gurel, P., Alushin, G.M.
PDB entry 7r94: T-Plastin-F-actin complex
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-06-28
Authors: Mei, L., Alushin, G.M.
PDB entry 7r95: Membrane bound structure of HR1 domain of SARS-CoV-2 spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: SOLUTION NMR
Deposited: 2021-06-28
Authors: Chiliveri, S.C., Bax, A.
PDB entry 7r96: Self-Assembled 3D DNA Hexagonal Tensegrity Triangle
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.68 Å
Deposited: 2021-06-28
Authors: Lu, B., Vecchioni, S., Ohayon, Y.P., Sha, R., Mao, C., Seeman, N.C.
PDB entry 7r97: Crystal structure of postcleavge complex of Escherichia coli RNase III
Classification: HYDROLASE/RNA
Source organism: Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.804 Å
Deposited: 2021-06-28
Authors: Dharavath, S., Shaw, G.X., Ji, X.
PDB entry 7r98: Structure of the SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody B6
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2021-06-28
Authors: Corbett, K.D., Ye, Q.
PDB entry 7r9b: Crystal structure of Triosephosphate isomerase from Candidatus Roizmanbacteria
Classification: ISOMERASE
Source organism: Candidatus Roizmanbacteria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-06-28
Authors: Vickers, C.J., Patrick, W.M., Fraga, D.
PDB entry 7r9c: Cocrystal of BRD4(D1) with N,N-dimethyl-2-[(3R)-3-(5-{2-[2-methyl-5-(propan-2-yl)phenoxy]pyrimidin-4-yl}-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-1-yl)pyrrolidin-1-yl]ethan-1-amine
Classification: GENE REGULATION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-06-29
Authors: Cui, H., Shi, K., Aihara, H., Pomerantz, W.C.K.
PDB entry 7r9d: Crystal structure of Nb_0 in complex with Fab_8D3
Classification: PROTEIN BINDING
Source organism: Mus musculus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-06-29
Authors: Wu, X.D., Rapoport, T.A.
PDB entry 7r9e: Methanococcus maripaludis chaperonin, open conformation 1
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-06-29
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7r9f: Wild-type yeast Pseudouridine Synthase, PUS1, bound to 5-Fluorouracil RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2021-06-29
Authors: Doyle, L.A., Stoddard, B.L.
PDB entry 7r9g: Catalytically inactive yeast Pseudouridine Synthase, PUS1, bound to RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-06-29
Authors: Doyle, L.A., Stoddard, B.L.
PDB entry 7r9h: Methanococcus maripaludis chaperonin, open conformation 2
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2021-06-29
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7r9i: Methanococcus maripaludis chaperonin, open conformation 2
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2021-06-29
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7r9j: Methanococcus maripaludis chaperonin, open conformation 4
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2021-06-29
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7r9k: Methanococcus maripaludis chaperonin, closed conformation 4
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-06-29
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7r9l: Crystal structure of HPK1 in complex with compound 2
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.332 Å
Deposited: 2021-06-29
Authors: Wu, P., Lehoux, I., Wang, W.
PDB entry 7r9m: Methanococcus maripaludis chaperonin, closed conformation 2
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-06-29
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7r9n: Crystal structure of HPK1 in complex with GNE1858
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-06-29
Authors: Wu, P., Lehoux, I., Wang, W.
PDB entry 7r9o: Methanococcus maripaludis chaperonin, closed conformation 1
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-06-29
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7r9p: Crystal structure of HPK1 in complex with compound 14
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2021-06-29
Authors: Wu, P., Lehoux, I., Wang, W.
PDB entry 7r9t: Crystal structure of HPK1 in complex with compound 17
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-06-29
Authors: Wu, P., Lehoux, I., Wang, W.
PDB entry 7r9u: Methanococcus maripaludis chaperonin, closed conformation 3
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2021-06-29
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7r9v: Structure of PIK3CA with covalent inhibitor 19
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2021-06-29
Authors: Burke, J.E., McPhail, J.A.
PDB entry 7r9w: LC3A in complex with Fragment 1-1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-06-29
Authors: Rouge, L., Steffek, M., Helgason, E., Dueber, E., Mulvihill, M.
PDB entry 7r9x: Crystal structure of a dehydrating condensation domain, AmbE-CmodAA, involved in nonribosomal peptide synthesis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2021-06-29
Authors: Fortinez, C.M., Schmeing, T.M.
PDB entry 7r9y: Structure of PIK3CA with covalent inhibitor 22
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-06-29
Authors: Burke, J.E., McPhail, J.A.
PDB entry 7r9z: LC3A in complex with Fragment 2-3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2021-06-29
Authors: Rouge, L., Steffek, M., Helgason, E., Dueber, E., Mulvihill, M.
PDB entry 7ra0: LC3A in complex with Fragment 2-10
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2021-06-29
Authors: Rouge, L., Steffek, M., Helgason, E., Dueber, E., Mulvihill, M.
PDB entry 7ra3: cryo-EM of human Gastric inhibitory polypeptide receptor GIPR bound to GIP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2021-06-29
Authors: Sun, B., Kobilka, B.K., Sloop, K.W., Feng, D., Kobilka, T.S.
PDB entry 7ra4: Crystal structure of Neisseria gonorrhoeae serine acetyltransferase (CysE) in complex with serine
Classification: TRANSFERASE
Source organism: Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-06-30
Authors: Hicks, J.L., Oldham, K.E., Prentice, E.J., Summers, E.L.
PDB entry 7ra5: CDK2 IN COMPLEX WITH COMPOUND 4
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2021-06-30
Authors: Marineau, J.J., Malojcic, G.
PDB entry 7ra7: Crystal structure of rabbit anti-HIV Fab 11A
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-06-30
Authors: Oyen, D., Wilson, I.A.
PDB entry 7ra8: SARS-CoV-2 S glycoprotein in complex with S2X259 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-06-30
Authors: Veesler, D., Tortorici, M.A., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ra9: Designed StabIL-2 seq1
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-06-30
Authors: Jude, K.M., Chu, A.E., Huang, P.-S., Garcia, K.C.
PDB entry 7raa: Designed StabIL-2 seq15
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2021-06-30
Authors: Jude, K.M., Chu, A.E., Huang, P.-S., Garcia, K.C.
PDB entry 7rab: Crystal structure of a dodecameric multicopper oxidase from M. hydrothermalis in a cubic lattice
Classification: OXIDOREDUCTASE
Source organism: Marinithermus hydrothermalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2021-06-30
Authors: Georgiadis, M.M.
PDB entry 7rac: Crystal structure of a dodecameric multicopper oxidase from M. hydrothermalis in an orthorhombic lattice
Classification: OXIDOREDUCTASE
Source organism: Marinithermus hydrothermalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2021-06-30
Authors: Georgiadis, M.M., Ogata, C.M.
PDB entry 7rad: Crystal Structure Analysis of ALDH1B1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-07-01
Authors: Fernandez, D., Chen, J.K.
PDB entry 7rae: AncAR1 - progesterone - Tif2
Classification: SIGNALING PROTEIN/TRANSCRIPTION
Source organism: Escherichia coli BL21; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.098 Å
Deposited: 2021-07-01
Authors: Ortlund, E.A.
PDB entry 7raf: AncAR1-Rev - progesterone - Tif2
Classification: SIGNALING PROTEIN/TRANSCRIPTION
Source organism: Escherichia phage EcSzw-2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.551 Å
Deposited: 2021-07-01
Authors: Colucci, J.K.
PDB entry 7rag: Structure of the CwlD amidase from Clostridioides difficile in complex with the GerS lipoprotein
Classification: HYDROLASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-01
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 7rah: Adenylate cyclase toxin RTX domain fragment bound to M1H5 Fab and M2B10 Fab
Classification: IMMUNE SYSTEM/TOXIN
Source organism: Bordetella pertussis; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-07-01
Authors: Goldsmith, J.A., McLellan, J.S.
PDB entry 7rai: Cryo-EM structure of M4008_N1 Fab in complex with BG505 DS-SOSIP.664 Env trimer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2021-07-01
Authors: Chan, K.-W., Kong, X.P.
PDB entry 7raj: Structure of PfCSP peptide 21 with antibody iGL-CIS43.D3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-01
Authors: Tripathi, P., Kwong, P.D.
PDB entry 7rak: Methanococcus maripaludis chaperonin complex in open conformation
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-07-01
Authors: Zhao, Y., Schmid, M., Frydman, J., Chiu, W.
PDB entry 7ral: SARS-CoV-2 S bound to S2X259 Fab (local refinement of the RBD/S2X259 variable domains)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-07-01
Authors: Veesler, D., Tortorici, M.A., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ram: Cryo-EM Structure of the HCMV gHgLgO Trimer Derived from AD169 and TR strains in complex with PDGFRalpha
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human betaherpesvirus 5; Human herpesvirus 5 strain AD169
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2021-07-02
Authors: Liu, J., Vanarsdall, A.L., Chen, D., Johnson, D.C., Jardetzky, T.S.
PDB entry 7ran: 5-HT2AR bound to a novel agonist in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2021-07-02
Authors: Barros-Alvarez, X., Kim, K., Panova, O., Roth, B.L., Skiniotis, G.
PDB entry 7rao: Structure of M66I mutant of disulfide stabilized HIV-1 CA hexamer
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2021-07-02
Authors: Bester, S.M., Kvaratskhelia, M.
PDB entry 7rap: Heterogeneous-backbone proteomimetic analogue of the disulfide-rich venom peptide lasiocepsin
Classification: ANTIBIOTIC
Experimental method: SOLUTION NMR
Deposited: 2021-07-02
Authors: Cabalteja, C.C., Horne, W.S.
PDB entry 7raq: Crystal structure of CV3-25 Fab bound to SARS-CoV-2 spike stem helix peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-07-02
Authors: Hurlburt, N.K., Pancera, M.
PDB entry 7rar: Structure of Q67H mutant of disulfide stabilized HIV-1 CA hexamer
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-07-02
Authors: Bester, S.M., Kvaratskhelia, M.
PDB entry 7ras: Structure of TRPV3 in complex with osthole
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2021-07-02
Authors: Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 7rat: EFFECTS OF TEMPERATURE ON PROTEIN STRUCTURE AND DYNAMICS: X-RAY CRYSTALLOGRAPHIC STUDIES OF THE PROTEIN RIBONUCLEASE-A AT NINE DIFFERENT TEMPERATURES FROM 98 TO 320 K
Classification: HYDROLASE (NUCLEIC ACID,RNA)
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 1991-08-13
Authors: Tiltonjunior, R.F., Dewan, J.C., Petsko, G.A., Gilbert, W.
PDB entry 7rau: Structure of TRPV3 in complex with osthole
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2021-07-02
Authors: Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 7rav: Cryo-EM structure of the unliganded form of NLR family apoptosis inhibitory protein 5 (NAIP5)
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-02
Authors: Paidimuddala, B., Cao, J., Xie, Q., Wu, H., Zhang, L.
PDB entry 7raw: Domain 1 of Starch adherence system protein 20 (Sas20) from Ruminococcus bromii
Classification: SUGAR BINDING PROTEIN
Source organism: Ruminococcus bromii L2-63
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-04
Authors: Cerqueira, F.M., Koropatkin, N.M.
PDB entry 7rax: ATP-binding state of the nucleotide-binding domain of Hsp70 DnaK mutant T199A
Classification: CHAPERONE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2021-07-04
Authors: Wang, W., Hendrickson, W.A.
PDB entry 7ray: Crystal structure of MBD2 with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-07-05
Authors: Liu, K., Dong, A., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Min, J., Structural Genomics Consortium (SGC)
PDB entry 7raz: Small conductance mechanosensitive channel MscS
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-05
Authors: Catalano, C., Ben-Hail, D., Qiu, W., des Georges, A., Guo, Y.
PDB entry 7rb0: Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 7.5
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2021-07-05
Authors: Godoy, A.S., Song, Y., Nakamura, A.M., Noske, G.D., Gawriljuk, V.O., Fernandes, R.S., Oliva, G.
PDB entry 7rb1: Isocitrate Lyase-1 from Mycobacterium tuberculosis covalently modified by 5-descarboxy-5-nitro-D-isocitric acid
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-05
Authors: Krieger, I.V., Mellott, D., Meek, T., Sacchettini, J.C.
PDB entry 7rb2: Cryo-EM structure of SARS-CoV-2 NSP15 NendoU in BIS-Tris pH 6.0
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2021-07-05
Authors: Godoy, A.S., Song, Y., Nakamura, A.M., Noske, G.D., Gawriljuk, V.O., Fernandes, R.S., Oliva, G.
PDB entry 7rb3: Cryo-EM structure of human binary NatC complex with a Bisubstrate inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-05
Authors: Deng, S., Marmorstein, R.
PDB entry 7rb4: Crystal structure of Peptono Toxin, a diphtheria toxin homolog, from Seinonella peptonophila
Classification: TOXIN
Source organism: Seinonella peptonophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2021-07-05
Authors: Sugiman-Marangos, S.N., Gill, S.K., Melnyk, R.A.
PDB entry 7rb5: Room temperature structure of hAChE in complex with substrate analog 4K-TMA
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-07-05
Authors: Kovalevsky, A., Gerlits, O., Radic, Z.
PDB entry 7rb6: Low temperature structure of hAChE in complex with substrate analog 4K-TMA
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-05
Authors: Kovalevsky, A., Gerlits, O., Radic, Z.
PDB entry 7rb7: Room temperature structure of hAChE in complex with substrate analog 4K-TMA and MMB4 oxime
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-07-05
Authors: Kovalevsky, A., Gerlits, O., Radic, Z.
PDB entry 7rb8: cryo-EM structure of the ADP state wild type myosin-15-F-actin complex
Classification: MOTOR PROTEIN/ATP Binding Protein
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2021-07-05
Authors: Gong, R., Reynolds, M.J., Gurel, P., Alushin, G.M.
PDB entry 7rb9: Cryo-EM structure of the rigor state Jordan myosin-15-F-actin complex
Classification: MOTOR PROTEIN/ATP Binding Protein
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2021-07-05
Authors: Gong, R., Reynolds, M.J., Gurel, P., Alushin, G.M.
PDB entry 7rbe: Human DNA polymerase beta crosslinked binary complex - A
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2021-07-06
Authors: Reed, A.J., Kumar, A.
PDB entry 7rbf: Human DNA polymerase beta crosslinked binary complex - B
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2021-07-06
Authors: Reed, A.J., Kumar, A.
PDB entry 7rbg: Human DNA polymerase beta crosslinked ternary complex 1
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-06
Authors: Reed, A.J., Kumar, A.
PDB entry 7rbh: Human DNA polymerase beta crosslinked ternary complex 2
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-07-06
Authors: Kumar, A.
PDB entry 7rbi: Human DNA polymerase beta crosslinked complex, 20 s Ca to Mg exchange
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-07-06
Authors: Kumar, A.
PDB entry 7rbj: Human DNA polymerase beta crosslinked complex, 30 s Ca to Mg exchange
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2021-07-06
Authors: Kumar, A.
PDB entry 7rbk: Human DNA polymerase beta crosslinked complex, 40 s Ca to Mg exchange
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-06
Authors: Kumar, A.
PDB entry 7rbl: Human DNA polymerase beta crosslinked complex, 60 s Ca to Mg exchange
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2021-07-06
Authors: Kumar, A.
PDB entry 7rbm: Human DNA polymerase beta crosslinked complex, 60 s Ca to Mn exchange
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2021-07-06
Authors: Kumar, A.
PDB entry 7rbn: Human DNA polymerase beta crosslinked complex, 20 min Ca to Mg exchange
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-07-06
Authors: Kumar, A.
PDB entry 7rbo: Human DNA polymerase beta crosslinked complex, 60 min Ca to Mg exchange
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2021-07-06
Authors: Kumar, A.
PDB entry 7rbp: Medicago truncatula D-1-piperideine-2-carboxylic acid reductase
Classification: OXIDOREDUCTASE
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-06
Authors: Torrens-spence, M.P., Weng, J.K.
PDB entry 7rbq: Co-crystal structure of human PRMT9 in complex with MT556 inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-06
Authors: Zeng, H., Dong, A., Hutchinson, A., Seitova, A., Li, Y., Gao, Y.D., Schneider, S., Siliphaivanh, P., Sloman, D., Nicholson, B., Fischer, C., Hicks, J., Brown, P.J., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 7rbr: The crystal structure of Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with a Lys48-linked di-ubiquitin
Classification: HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-07-06
Authors: Osipiuk, J., Tesar, C., Endres, M., Lanham, B.T., Wydorski, P., Fushman, D., Joachimiak, L., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rbs: The crystal structure of Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with human ISG15
Classification: HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2021-07-06
Authors: Osipiuk, J., Tesar, C., Jedrzejczak, R., Endres, M., Wydorski, P., Joachimiak, L., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rbt: cryo-EM structure of human Gastric inhibitory polypeptide receptor GIPR bound to tirzepatide
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2021-07-06
Authors: Sun, B., Kobilka, B.K., Sloop, K.W., Feng, D., Kobilka, T.S.
PDB entry 7rbu: SARS-CoV-2 Spike in complex with PVI.V6-14 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-07-06
Authors: Altomare, C.G., Bajic, G.
PDB entry 7rbv: SARS-CoV-2 Spike in complex with PVI.V6-14 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-06
Authors: Altomare, C.G., Bajic, G.
PDB entry 7rbw: Structure of Biliverdin-binding Serpin of Boana punctata (polka-dot tree frog)
Classification: FLUORESCENT PROTEIN
Source organism: Boana punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-07-06
Authors: Fedorov, E., Manoilov, K.Y., Verkhusha, V., Almo, S.C., Ghosh, A.
PDB entry 7rbx: Crystal structure of isocitrate lyase and phosphorylmutase:isocitrate lyase from Brucella melitensis biovar Abortus 2308 bound to itaconic acid
Classification: LYASE/LYASE INHIBITOR
Source organism: Brucella abortus (strain 2308)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-06
Authors: Seattle Structural Genomics Center for Infectious Disease, Edwards, T.E., Abendroth, J., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7rby: Crystal structure of Nanobody nb112 and SARS-CoV-2 RBD
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2021-07-06
Authors: Chen, Y., Tolbert, W., Pazgier, M.
PDB entry 7rbz: X-ray Structure of SARS-CoV-2 main protease covalently modified by compound GRL-017-20
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-07-06
Authors: Mesecar, A.D., Anson, B.A., Ghosh, A.K., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rc0: X-ray Structure of SARS-CoV-2 main protease covalently modified by compound GRL-091-20
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-07-06
Authors: Mesecar, A.D., Anson, B.A., Ghosh, A.K., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rc1: X-ray Structure of SARS-CoV main protease covalently modified by compound GRL-0686
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2021-07-07
Authors: Mesecar, A.D., Anson, B.A., Ghosh, A.K., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rc2: Aeronamide N-methyltransferase, AerE
Classification: TRANSFERASE
Source organism: Microvirgula aerodenitrificans DSM 15089
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2021-07-07
Authors: Cogan, D.P., Reyes, R., Nair, S.K.
PDB entry 7rc3: Aeronamide N-methyltransferase, AerE (Y137F)
Classification: TRANSFERASE
Source organism: Microvirgula aerodenitrificans DSM 15089
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2021-07-07
Authors: Cogan, D.P., Reyes, R., Nair, S.K.
PDB entry 7rc4: Aeronamide N-methyltransferase, AerE (D141A)
Classification: TRANSFERASE
Source organism: Microvirgula aerodenitrificans DSM 15089
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2021-07-07
Authors: Cogan, D.P., Reyes, R., Nair, S.K.
PDB entry 7rc5: Aeronamide N-methyltransferase, AerE (N231A)
Classification: TRANSFERASE
Source organism: Microvirgula aerodenitrificans DSM 15089
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-07-07
Authors: Cogan, D.P., Reyes, R., Nair, S.K.
PDB entry 7rc6: Aeronamide N-methyltransferase, AerE, bound to modified peptide substrate, AerA-DL,34
Classification: TRANSFERASE/BIOSYNTHETIC PROTEIN
Source organism: Microvirgula aerodenitrificans DSM 15089
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2021-07-07
Authors: Cogan, D.P., Reyes, R., Nair, S.K.
PDB entry 7rc7: Solution NMR Structure of [Ala19]Crp4
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-07
Authors: Conibear, A.C., Rosengren, K.J.
PDB entry 7rc8: Solution NMR Structure of [D-Ala19]Crp4
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-07
Authors: Conibear, A.C., Rosengren, K.J.
PDB entry 7rc9: Crystal structure of human TLR8 ectodomain bound to small molecule antagonist 21
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2021-07-07
Authors: Critton, D.A.
PDB entry 7rca: Crystal structure of Aro2p chorismate synthase from Candida lusitaniae
Classification: LYASE
Source organism: Clavispora lusitaniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2021-07-07
Authors: Stogios, P.J., Evdokimova, E., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rcb: Crystal Structure of a PMS2 VUS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-07
Authors: D'Arcy, B.M., Prakash, A.
PDB entry 7rcc: First stage engineered variant of I-OnuI after initial reassembly
Classification: DNA BINDING PROTEIN/DNA
Source organism: Synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2021-07-07
Authors: Ubilla-Rodriguez, N.C., Werther, R.A., Stoddard, B.L.
PDB entry 7rcd: Second stage reengineered variant of I-OnuI targeting human PD1 gene with activity enhancing substitutions
Classification: DNA BINDING PROTEIN/DNA
Source organism: Synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.448 Å
Deposited: 2021-07-07
Authors: Ubilla-Rodriguez, N.C., Werther, R.A., Stoddard, B.L.
PDB entry 7rce: Third stage reengineered variant of I-OnuI with specificity enhancing substitutions
Classification: DNA BINDING PROTEIN/DNA
Source organism: Synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2021-07-07
Authors: Ubilla-Rodriguez, N.C., Werther, R.A., Stoddard, B.L.
PDB entry 7rcf: Fourth stage reengineered variant of I-OnuI with stability enhancing substitutions
Classification: DNA BINDING PROTEIN/DNA
Source organism: Synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.233 Å
Deposited: 2021-07-07
Authors: Ubilla-Rodriguez, N.C., Werther, R.A., Stoddard, B.L.
PDB entry 7rcg: I-OnuI_e-hPD1-f final stage reengineered variant of I-OnuI
Classification: DNA BINDING PROTEIN/DNA
Source organism: Synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.368 Å
Deposited: 2021-07-07
Authors: Smiley, A.T., Werther, R.A., Stoddard, B.L.
PDB entry 7rch: Crystal structure of NS1-ED of Vietnam influenza A virus in complex with the p85-beta-iSH2 domain of human PI3K
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-07-07
Authors: Kim, I., Zhao, B., Li, P., Cho, J.H.
PDB entry 7rci: Crystal Structure of a PMS2 VUS with Substrate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2021-07-07
Authors: D'Arcy, B.M., Prakash, A.
PDB entry 7rcj: Crystal structure of ZnuA from Citrobacter koseri
Classification: METAL BINDING PROTEIN
Source organism: Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2021-07-07
Authors: Yukl, E.T., Yekwa, E.L.
PDB entry 7rck: Crystal Structure of PMS2 with Substrate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2021-07-07
Authors: D'Arcy, B.M., Prakash, A.
PDB entry 7rcl: Crystal Structure of ADP-bound Galactokinase
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-07
Authors: Whitby, F.G., Hall, M.D.
PDB entry 7rcm: Crystal Structure of ADP-bound Galactokinase
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-07
Authors: Whitby, F.G.
PDB entry 7rco: Crystal structure of human TGF-beta-2 bound to 4A11.V2 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-07-07
Authors: Yin, J., Lupardus, P.J., Sudhamsu, J.
PDB entry 7rcp: GltPh mutant (S279E/D405N) in complex with aspartate and sodium ions
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2021-07-07
Authors: Reddy, K.D., Boudker, O.
PDB entry 7rcq: Crystal structure of triosephosphate isomerase from Ktedonobacter racemifer
Classification: ISOMERASE
Source organism: Ktedonobacter racemifer
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-07-07
Authors: Vickers, C.J., Patrick, W.M., Fraga, D.
PDB entry 7rcr: Crystal Structure of the refolded Hemagglutinin head domain of Influenza A virus A/Ohio/09/2015
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-07-08
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7rcs: Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.160
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-08
Authors: Xu, K., Kwong, P.D.
PDB entry 7rct: Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor RMC-4550
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-08
Authors: Seegar, T.C.M.
PDB entry 7rcu: Synthetic Max homodimer mimic in complex with DNA
Classification: TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2021-07-08
Authors: Speltz, T., Qiao, Z., Shangguan, S., Fanning, S., Greene, J., Moellering, R.
PDB entry 7rcv: High-resolution structure of photosystem II from the mesophilic cyanobacterium, Synechocystis sp. PCC 6803
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.01 Å
Deposited: 2021-07-08
Authors: Gisriel, C.J., Brudvig, G.W.
PDB entry 7rcw: Crystal structure of C. difficile penicillin-binding protein 2 in complex with ampicillin
Classification: PEPTIDE BINDING PROTEIN
Source organism: Clostridioides difficile (strain R20291)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-08
Authors: Sacco, M., Chen, Y.
PDB entry 7rcx: Crystal structure of C. difficile penicillin-binding protein 2 in apo form
Classification: PEPTIDE BINDING PROTEIN
Source organism: Clostridioides difficile (strain R20291)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-07-08
Authors: Sacco, M., Chen, Y.
PDB entry 7rcy: Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole
Classification: PEPTIDE BINDING PROTEIN
Source organism: Clostridioides difficile (strain R20291)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-08
Authors: Sacco, M., Chen, Y.
PDB entry 7rcz: Crystal structure of C. difficile SpoVD in complex with ampicillin
Classification: PEPTIDE BINDING PROTEIN
Source organism: Clostridioides difficile (strain R20291)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-08
Authors: Sacco, M., Chen, Y.
PDB entry 7rd0: Crystal structure of C. difficile penicillin-binding protein 3 in apo form
Classification: PEPTIDE BINDING PROTEIN
Source organism: Clostridioides difficile (strain R20291)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-08
Authors: Sacco, M., Chen, Y.
PDB entry 7rd1: The Capsid Structure of the ChAdOx1 viral vector/chimpanzee adenovirus Y25
Classification: VIRUS
Source organism: Chimpanzee adenovirus Y25
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2021-07-08
Authors: Baker, A.T., Boyd, R.J., Sarkar, D., Vermaas, J.V., Williams, D., Singharoy, A.
PDB entry 7rd2: Co-crystal structure of Chaetomium glucosidase with compound 2
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2021-07-09
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 7rd3: Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m42.126
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2021-07-09
Authors: Xu, K., Kwong, P.D.
PDB entry 7rd4: Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.149
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-07-09
Authors: Xu, K., Kwong, P.D.
PDB entry 7rd5: Crystal structure of Tspan15 large extracellular loop (Tspan15 LEL) in complex with 1C12 Fab
Classification: CELL ADHESION
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2021-07-09
Authors: Lipper, C.H., Gabriel, K.H., Seegar, T.C.M., Durr, K.L., Tomlinson, M.G., Blacklow, S.C.
PDB entry 7rd6: Structure of the S. cerevisiae P4B ATPase lipid flippase in the E2P state
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2021-07-09
Authors: Bai, L., Jain, B.K., You, Q., Duan, H.D., Graham, T.R., Li, H.
PDB entry 7rd7: Structure of the S. cerevisiae P4B ATPase lipid flippase in the E2P-transition state
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2021-07-09
Authors: Bai, L., Jain, B.K., You, Q., Duan, H.D., Graham, T.R., Li, H.
PDB entry 7rd8: Structure of the S. cerevisiae P4B ATPase lipid flippase in the E1-ATP state
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.64 Å
Deposited: 2021-07-09
Authors: Bai, L., Jain, B.K., You, Q., Duan, H.D., Graham, T.R., Li, H.
PDB entry 7rd9: Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.159
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2021-07-09
Authors: Xu, K., Kwong, P.D.
PDB entry 7rda: Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.138
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2021-07-09
Authors: Xu, K., Kwong, P.D.
PDB entry 7rdb: Crystal structure of Tspan15 large extracellular loop (Tspan15 LEL)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2021-07-09
Authors: Lipper, C.H., Gabriel, K.H., Seegar, T.C.M., Durr, K.L., Tomlinson, M.G., Blacklow, S.C.
PDB entry 7rde: Human Triose Phosphate Isomerase Q181P
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2021-07-09
Authors: VanDemark, A.P., Kowalski, J.
PDB entry 7rdf: Crystal structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase Y249F co-crystallized in the presence of D-arginine
Classification: FLAVOPROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2021-07-09
Authors: Reis, R.A.G., Iyer, A., Agniswamy, A., Weber, I.T., Gadda, G.
PDB entry 7rdg: Crystal structure of D103A human Galectin-7 mutant in presence of lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-09
Authors: Pham, N.T.H., Calmettes, C., Doucet, N.
PDB entry 7rdh: Crystal structure of the de novo designed binding protein H3mb in complex with the 1968 influenza A virus hemagglutinin
Classification: VIRAL PROTEIN/DE NOVO PROTEIN
Source organism: Escherichia coli; Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2021-07-09
Authors: Kadam, R.U., Wilson, I.A.
PDB entry 7rdj: Crystal structure of PCDN-16B, an anti-HIV antibody from the PCDN bnAb lineage (non-cysteinylated state)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-07-09
Authors: Omorodion, O., Wilson, I.A.
PDB entry 7rdk: Crystal structure of PCDN-16B, an anti-HIV antibody from the PCDN bnAb lineage (cysteinylated state)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2021-07-09
Authors: Omorodion, O., Wilson, I.A.
PDB entry 7rdl: Crystal structure of PCDN-22A, an anti-HIV antibody from the PCDN bnAb lineage
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2021-07-09
Authors: Omorodion, O., Wilson, I.A.
PDB entry 7rdm: Crystal structure of PCDN-38B, a broadly neutralizing anti-HIV antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2021-07-09
Authors: Omorodion, O., Wilson, I.A.
PDB entry 7rdn: Crystal structure of S. cerevisiae pre-mRNA leakage protein 39 (Pml39)
Classification: NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2021-07-09
Authors: Hashimoto, H., Ramirez, D.H., Pawlak, N., Blobel, G., Palancade, B., Debler, E.W.
PDB entry 7rdo: Crystal structure of human galectin-3 CRD in complex with diselenodigalactoside
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2021-07-10
Authors: Kishor, C., Go, R.M., Blanchard, H.
PDB entry 7rdp: Crystal structure of human galectin-3 CRD in complex with selenodigalactoside
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2021-07-10
Authors: Kishor, C., Go, R.M., Blanchard, H.
PDB entry 7rdq: Cryo-EM structure of Thermus thermophilus reiterative transcription complex with 11nt oligo-G RNA
Classification: TRANSCRIPTION
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-10
Authors: Liu, Y., Ebright, R.H.
PDB entry 7rdr: Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces
Classification: PEPTIDE BINDING PROTEIN
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2021-07-10
Authors: Shen, B.W., Stoddard, B.L.
PDB entry 7rds: Structure of human NTHL1
Classification: HYDROLASE, Lyase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-07-11
Authors: Carroll, B.L., Zahn, K.E., Doublie, S.
PDB entry 7rdt: Structure of human NTHL1 - linker 1 chimera
Classification: HYDROLASE, Lyase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-11
Authors: Carroll, B.L., Doublie, S.
PDB entry 7rdu: Crystal structure of Campylobacter jejuni keto said reductoisomerase in complex with magnesium and oxidixized and reduced NADPH
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni (strain RM1221)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.502 Å
Deposited: 2021-07-11
Authors: Guddat, L.W., You, L.
PDB entry 7rdv: TFH TCR bound to MHC Class II IAd presenting aggrecan epitope
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.90007 Å
Deposited: 2021-07-11
Authors: Lim, J.J., Rossjohn, J., Reid, H.
PDB entry 7rdw: Crystal Structure of FH1 Fab bound to HXb2 HIV-1 gp120 core
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2021-07-12
Authors: Weidle, C., Pancera, M.
PDB entry 7rdx: SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - open class
Classification: REPLICATION/TRANSCRIPTION
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-12
Authors: Chen, J., Malone, B., Campbell, E.A., Darst, S.A.
PDB entry 7rdy: SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - engaged class
Classification: REPLICATION/TRANSCRIPTION
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-12
Authors: Chen, J., Malone, B., Campbell, E.A., Darst, S.A.
PDB entry 7rdz: SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - apo class
Classification: REPLICATION/TRANSCRIPTION
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-12
Authors: Chen, J., Malone, B., Campbell, E.A., Darst, S.A.