LiteFold/PDB huggingface dataset:
PDB entry 9dz8: Catalytic domain of Dihydrolipoamide Succinytransferase
Classification: TRANSFERASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2024-10-15
Authors: Carr, K.D., Borst, A.J., Weidle, C.
PDB entry 9dza: Photoactivation in Bacteriophytochrome, high resolution cryo structure in the dark.
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-10-15
Authors: Malla, T.N., Stojkovic, E.A., Schmidt, M.
PDB entry 9dzc: PvRBP2b N-terminal domain stabilised mutant WHT2483
Classification: CELL ADHESION
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-10-16
Authors: Pymm, P., D Sa, J., Tham, W.H.
PDB entry 9dzd: PvRBP2b N-terminal domain stabilised mutant WHT2484
Classification: CELL ADHESION
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-10-16
Authors: Pymm, P., D Sa, J., Tham, W.H.
PDB entry 9dze: Computationally Designed Bifaceted Protein Nanomaterial pD5-14
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-10-16
Authors: Carr, K.D., Borst, A.J., Weidle, C.
PDB entry 9dzf: Human GC-A bound to ANP and XX16
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-10-16
Authors: Liu, S., Huang, X.-Y.
PDB entry 9dzg: Human GC-A bound to XX16
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-16
Authors: Liu, S., Huang, X.-Y.
PDB entry 9dzh: Human GC-A bound to ANP and REGN5308
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-10-16
Authors: Liu, S., Huang, X.-Y.
PDB entry 9dzj: Human GC-A bound to ANP and 2xREGN5308
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-10-16
Authors: Liu, S., Huang, X.-Y.
PDB entry 9dzk: Human GC-A bound to REGN5308
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-16
Authors: Liu, S., Huang, X.-Y.
PDB entry 9dzm: Dimeric human OCT2 (POU2F2) POU domain bound to palindromic MORE DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2024-10-16
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 9dzn: KAT6A MYST domain complexed with a H3K14-CoA bisubstrate inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.724 Å
Deposited: 2024-10-16
Authors: Johnson, E., Greasley, S., Brodsky, O.
PDB entry 9dzo: Structure of ALAS bound to succinyl-CoA from S. cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.691 Å
Deposited: 2024-10-16
Authors: Tran, J.U., Brown, B.L.
PDB entry 9dzp: Photoactivation in Bacteriophytochromes, reference (dark) structure for the 100 ps time point
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-10-16
Authors: Malla, T.N., Stojkovic, E.A., Schmidt, M.
PDB entry 9dzq: CryoEM structure of the human antibodies PIV3HN-05 and PIV3HN-13 in complex with the parainfluenza virus hemagglutinin-neuraminidase protein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human respirovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2024-10-16
Authors: Mousa, J.J., Miller, R.J.
PDB entry 9dzr: The crystal structure of F182AQE CYP199A4 bound to 4-methylthiobenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.733 Å
Deposited: 2024-10-16
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dzs: Acanthamoeba Polyphaga Mimivirus R699
Classification: VIRAL PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-10-17
Authors: Richards, S.J., Buhlheller, C., Kim, J.S., Chen, T., Wu, J., Guo, H.
PDB entry 9dzv: Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 in the E1 state
Classification: LIPID TRANSPORT
Source organism: Cryptococcus neoformans var. grubii H99
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-10-17
Authors: Duan, H.D., Li, H.
PDB entry 9dzw: De novo calcium channel hexamer, CalC6_3 with DHR extensions
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2024-10-17
Authors: Weidle, C., Liu, Y., Borst, A.J.
PDB entry 9dzx: MHV spike tail heptapeptide complexed with coatomer alpha-WD40 domain
Classification: PROTEIN TRANSPORT
Source organism: Schizosaccharomyces pombe; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-10-17
Authors: Shakya, A.K., Hasan, S.S.
PDB entry 9dzy: Cryo-EM structure of Pre-Chi dynein bound to Lis1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-17
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9dzz: Cryo-EM structure of a TatBC complex from Escherichia coli
Classification: TRANSLOCASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-17
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e00: Cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2024-10-17
Authors: Xie, X., Zhou, X.E., Worden, E.J., Jones, P.A.
PDB entry 9e01: Cryo-EM structure of a TatBC-MdoD complex from Escherichia coli
Classification: TRANSLOCASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-10-17
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e02: Cryo-EM structure of a TatBC complex from Nitratifractor salsuginis
Classification: TRANSLOCASE
Source organism: Nitratifractor salsuginis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-10-17
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e03: Cryo-EM structure of a TatBC complex from Myxococcus xanthus
Classification: TRANSLOCASE
Source organism: Myxococcus xanthus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-17
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e04: Cryo-EM structure of TatBC-CueO signal peptide complex from Nitratifractor salsuginis
Classification: TRANSLOCASE
Source organism: Nitratifractor salsuginis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-17
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e05: The consensus model of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2024-10-17
Authors: Xie, X., Zhou, X.E., Worden, E.J., Jones, P.A.
PDB entry 9e06: Cryo-EM structure of a TatBC complex from Nitratifractor salsuginis in nanodisc
Classification: TRANSLOCASE
Source organism: Nitratifractor salsuginis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-17
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e07: Cryo-EM structure of a TatAC complex from Nitratifractor salsuginis
Classification: TRANSLOCASE
Source organism: Nitratifractor salsuginis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-17
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e08: Cryo-EM structure of MdoD from Escherichia coli
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2024-10-17
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e09: Cryo-EM structure a single nucleosome (2) focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2024-10-17
Authors: Xie, X., Zhou, X.E., Worden, E.J., Jones, P.A.
PDB entry 9e0a: Structure of proline utilization A complexed with 1,4-benzenedimethanol
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2024-10-17
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9e0b: Structure of proline utilization A complexed with (2,3-dihydro-1-benzofuran-5-yl)methanol
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-10-17
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9e0c: Structure of proline utilization A complexed with 1-benzofuran-5-ylmethanol
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-10-17
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9e0d: Structure of proline utilization A complexed with piperonyl alcohol
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-10-17
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9e0e: Structure of proline utilization A complexed with (1H-indol-5-yl)methanol
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2024-10-17
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9e0f: A focus of DNMT tetramer (1) of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-10-17
Authors: Xie, X., Zhou, X.E., Worden, E.J., Jones, P.A.
PDB entry 9e0g: A focus of tetramer (2) of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2024-10-17
Authors: Xie, X., Zhou, X.E., Worden, E.J., Jones, P.A.
PDB entry 9e0h: De novo calcium channel heptamer, CalC6_3 with DHR extensions. Off target multimerization state
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.62 Å
Deposited: 2024-10-17
Authors: Weidle, C., Liu, Y., Borst, A.J.
PDB entry 9e0i: Structure of the HKU5-19s RBD bound to the Bos taurus ACE2 receptor
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Bos taurus; Pipistrellus bat coronavirus HKU5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-10-18
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9e0j: Structure and evolution of Photosystem I in the early-branching cyanobacterium Anthocerotibacter panamensis
Classification: PHOTOSYNTHESIS
Source organism: Anthocerotibacter panamensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-10-18
Authors: Gisriel, C.J., Ho, M.
PDB entry 9e0k: Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-18
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e0l: The prefusion conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB)
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2024-10-18
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9e0m: CryoEM structure of holoenzyme of inducible Lysine decarboxylase from Hafnia alvei holoenzyme at 2.19 Angstrom resolution
Classification: LYASE
Source organism: Hafnia alvei ATCC 51873
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-10-18
Authors: Duhoo, Y., Desfosses, A., Gutsche, I., Doukov, T.I., Berkowitz, D.B.
PDB entry 9e0n: M. smegmatis unmethylated 70S ribosome structure
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-10-18
Authors: Nandi, S., Conn, G.L.
PDB entry 9e0o: CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei L-hydrazino-Lysine analog at 2.04 Angstrom resolution
Classification: LYASE
Source organism: Hafnia alvei ATCC 51873
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2024-10-18
Authors: Duhoo, Y., Desfosses, A., Gutsche, I., Doukov, T.I., Berkowitz, D.B.
PDB entry 9e0p: M. smegmatis methylated 70S ribosome structure
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-10-18
Authors: Nandi, S., Conn, G.L.
PDB entry 9e0q: CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei D-hydrazino-Lysine analog at 2.3 Angstrom resolution
Classification: LYASE
Source organism: Hafnia alvei ATCC 51873
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-10-18
Authors: Duhoo, Y., Desfosses, A., Gutsche, I., Doukov, T.I., Berkowitz, D.B.
PDB entry 9e0r: Cryo-EM structure of a single nucleosome (1) focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-18
Authors: Xie, X., Zhou, X.E., Worden, E.J., Jones, P.A.
PDB entry 9e0s: Cryo-EM structure of a the periplasmic insert from Myxococcus TAtC
Classification: TRANSLOCASE
Source organism: Myxococcus xanthus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-10-18
Authors: Deme, J.C., Bryant, O.J., Berks, B.C., Lea, S.M.
PDB entry 9e0t: Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-19
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e0u: Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-19
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e0v: GSDMD bound to a peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.635 Å
Deposited: 2024-10-19
Authors: Wang, R.
PDB entry 9e0w: Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-20
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e0x: Cryo-EM structure of Phi dynein
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-10-20
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e0y: Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-20
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e0z: Dimeric motor domains from phi-like dynein-1 bound to a Lis1 dimer under Nde1-Lis1 condition
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-10-21
Authors: Yang, J., Zhang, K.
PDB entry 9e10: Dimeric motor domains from phi dynein-1 under Lis1 condition
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-10-21
Authors: Yang, J., Zhang, K.
PDB entry 9e11: Dimeric motor domains from phi-like dynein-1 bound to a Lis1 dimer under Lis1 condition
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-10-21
Authors: Yang, J., Zhang, K.
PDB entry 9e12: Full-length human dynein-1 in phi comformation under Lis1 condition
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-10-21
Authors: Yang, J., Zhang, K.
PDB entry 9e13: Full-length human dynein-1 in phi-like comformation bound to a Lis1 dimer under Lis1 condition
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-10-21
Authors: Yang, J., Zhang, K.
PDB entry 9e14: Full-length human dynein-1 in phi-like comformation bound to a Lis1 dimer under Nde1-Lis1 condition
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2024-10-21
Authors: Yang, J., Zhang, K.
PDB entry 9e15: Alpha-Delta heterodimeric form of soluble hydrogenase I from Pyrococcus furiosus. Data processed and model refined in P1
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-10-21
Authors: Lanzilotta, W.N., McTernan, P.M., Adams, M.W.W.
PDB entry 9e17: Structure of RyR1 in the primed state in the presence of caffeine (reprocessed/reanalyzed from EMPIAR-10997, 7TZC, EMD-26205)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e18: Structure of RyR1 in the primed state in the presence of pentoxifylline
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e19: Structure of RyR1 in the open state in the presence of pentoxifylline
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1a: Structure of RyR1 in the primed state in the presence of dyphylline
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1b: Structure of RyR1 in the open state in the presence of dyphylline
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.49 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1c: Structure of RyR1 in the primed state in the presence of IBMX
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1d: Structure of RyR1 in the primed state in the presence of enprofylline
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1e: Structure of RyR1 in the primed state in the presence of uracil
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1f: Structure of RyR1 in the primed state in the presence of allopurinol
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1g: Structure of RyR1 in the primed state in the presence of oxypurinol
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1h: Structure of RyR1 in the primed state in the presence of oxopyricid
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1i: Structure of RyR1 in the open state in the presence of oxopyricid
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-21
Authors: Miotto, M.C., Marks, A.R.
PDB entry 9e1j: Alpha-Delta heterodimeric form of soluble hydrogenase I from Pyrococcus furiosus. Data processed and model refined in P21221
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-10-21
Authors: Lanzilotta, W.N., Adams, M.W.W.
PDB entry 9e1k: Discovery of Potent, Highly Selective and Efficacious SMARCA2 Degraders - Compound 11
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-10-21
Authors: Strickland, C., Rice, C.
PDB entry 9e1l: Snf2h bound nucleosome complex - ClassA1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1m: Snf2h bound nucleosome complex - ClassA2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1n: Snf2h bound nucleosome complex-ClassA3
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1o: Snf2h bound nucleosome complex - ClassB1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1p: Snf2h bound nucleosome complex - ClassB2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1q: Snf2h bound nucleosome complex - ClassB3
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1r: Snf2h bound nucleosome complex - ClassB4
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1t: CryoEM structure of LARGE1 bound to UDP-GlcA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-10-21
Authors: Joseph, S., Spellmon, N., Campbell, K.P.
PDB entry 9e1u: Snf2h bound nucleosome complex - ClassC1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1v: Snf2h bound nucleosome complex - ClassC2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1w: Snf2h bound nucleosome complex - ClassC3
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1x: Snf2h bound nucleosome complex - ClassD1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1y: Empty Nucleosome with 601 widom sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-10-21
Authors: Malik, D., Deshmukh, A.A., Bilokapic, S., Halic, M.
PDB entry 9e1z: [F:Hg2+:T] Mercury base pair with 2-thiothymidine and thymine
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.06 Å
Deposited: 2024-10-21
Authors: Vecchioni, S., Lu, B., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9e20: [iU:Hg2+:F] Mercury base pair with 2-thiothymidine and iodouracil
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.72 Å
Deposited: 2024-10-21
Authors: Vecchioni, S., Lu, B., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9e21: CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-21
Authors: Jaiswal, D., Bajic, G.
PDB entry 9e22: Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-21
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e23: Cryo-EM structure of Pre-Chi dynein tail
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å
Deposited: 2024-10-21
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e24: Closed structure of CpaF without nucleotides (Apo dataset)
Classification: MOTOR PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-21
Authors: Yen, I.Y., Howell, P.L.
PDB entry 9e25: Compact structure of CpaF without nucleotides (Apo dataset)
Classification: MOTOR PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-21
Authors: Yen, I.Y., Howell, P.L.
PDB entry 9e26: Compact structure of CpaF with two ATPs and two ADPs (Under-saturated ATP/ADP dataset)
Classification: MOTOR PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-21
Authors: Yen, I.Y., Howell, P.L.
PDB entry 9e27: Expanded structure of CpaF with two ATPs and four ADPs (Under-saturated ATP/ADP dataset)
Classification: MOTOR PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-21
Authors: Yen, I.Y., Howell, P.L.
PDB entry 9e28: Cryo-EM structure of Phi dynein tail
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-10-21
Authors: Nguyen, K.H.V., Kendrick, A.A., Leschziner, A.E.
PDB entry 9e29: Expanded structure of CpaF with two ATPs and four ADPs (Saturated ATP dataset)
Classification: MOTOR PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-21
Authors: Yen, I.Y., Howell, P.L.
PDB entry 9e2a: Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-22
Authors: Deane-Alder, K., Belousoff, M.J., Wootten, D.L.
PDB entry 9e2b: Structure of a solute binding protein from Desulfonauticus sp. bound to L-tryptophan
Classification: PEPTIDE BINDING PROTEIN
Source organism: Desulfonauticus sp. 38_4375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-22
Authors: Rahman, M., Frkic, R.L., Smith, O.B., Jackson, C.J.
PDB entry 9e2c: Crystal structure of DEAD-box RNA helicase DDX3X R326H mutant
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-10-22
Authors: Prado, P.F.V., Oliveira, J.F., Nascimento, A.F.Z.
PDB entry 9e2d: Cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to a di-nucleosome with a five base pair linker
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.08 Å
Deposited: 2024-10-22
Authors: Xie, X., Liu, M., Zhou, X.E., Worden, E., Jones, P.
PDB entry 9e2e: The structure of the junction region of the wild-type murine native cardiac thin filament in Ca2+-free state
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-10-22
Authors: Galkin, V.E., Risi, C.M.
PDB entry 9e2f: Cryo-EM structure of a di-nucleosome with a five base pair linker
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2024-10-22
Authors: Xie, X., Liu, M., Zhou, X.E., Worden, E., Jones, P.
PDB entry 9e2g: Cryo-EM structure of 48 nm repeat of microtubule doublet from T. brucei flagellum
Classification: MOTOR PROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-22
Authors: Xia, X., Shimogawa, M.M., Wang, H., Liu, S., Wijono, A., Langousis, G., Kassem, A.M., Wohlschlegel, J.A., Hill, K., Zhou, Z.H.
PDB entry 9e2h: Variediene synthase hexameric prenyltransferase core
Classification: TRANSFERASE
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-10-22
Authors: Wenger, E.S., Christianson, D.W.
PDB entry 9e2i: Variediene synthase with six cyclases
Classification: TRANSFERASE
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-10-22
Authors: Wenger, E.S., Christianson, D.W.
PDB entry 9e2j: Variediene synthase with five cyclases
Classification: TRANSFERASE
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2024-10-22
Authors: Wenger, E.S., Christianson, D.W.
PDB entry 9e2k: Variediene synthase with one cyclase (conformation 1)
Classification: TRANSFERASE
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-10-22
Authors: Wenger, E.S., Christianson, D.W.
PDB entry 9e2l: Variediene synthase with one cyclase (conformation 2)
Classification: TRANSFERASE
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-10-22
Authors: Wenger, E.S., Christianson, D.W.
PDB entry 9e2m: Variediene synthase with one cyclase (conformation 3)
Classification: TRANSFERASE
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-10-22
Authors: Wenger, E.S., Christianson, D.W.
PDB entry 9e2p: Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613)
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2024-10-22
Authors: Ravitch, E.E., Baltrusaitis, E.E., Barrie, K.R., Dominguez, R.
PDB entry 9e2q: Cryo-EM structure of DNMT 3A2/3B3 tetramer in complex with a di-nucleosome with a six base pair linker
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-10-22
Authors: Xie, X., Liu, M., Zhou, X.E., Worden, E., Jones, P.
PDB entry 9e2r: Cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to a di-nucleosome and an histone-3 peptide
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.71 Å
Deposited: 2024-10-22
Authors: Xie, X., Liu, M., Zhou, X.E., Worden, E., Jones, P.
PDB entry 9e2s: Apo TRiC in closed conformation
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-10-22
Authors: Zhao, Y., Chiu, W.
PDB entry 9e2t: Structure of a de novo designed interleukin-21 mimetic complex with IL-21R and IL-2Rg
Classification: DE NOVO PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-10-22
Authors: Abhiraman, G.C., Jude, K.M., Garcia, K.C.
PDB entry 9e2u: Crystal structure of DDB1-CRBN-ALV1 complex bound to triple ZnF of Helios (IKZF2 ZF1-3)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.11 Å
Deposited: 2024-10-23
Authors: Nowak, R.P., Fischer, E.S.
PDB entry 9e2v: Cryo-EM map of homodecameric TraT
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2024-10-23
Authors: Lundgren, C.A.K., Lea, S., Deme, J.
PDB entry 9e2w: Cryo-EM structure of yeast CMG helicase stalled at G4-containing DNA template, state 1
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae W303; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-23
Authors: Allwein, B., Batra, S., Remus, D., Hite, R.
PDB entry 9e2x: Cryo-EM structure of yeast CMG helicase stalled at G4-containing DNA template, state 2
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae W303; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-10-23
Authors: Allwein, B., Batra, S., Remus, D., Hite, R.
PDB entry 9e2y: Cryo-EM structure of yeast CMG helicase stalled at G4-containing DNA template, state 3
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae W303; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-23
Authors: Allwein, B., Batra, S., Remus, D., Hite, R.
PDB entry 9e2z: Cryo-EM structure of human CMG helicase stalled at G4-containing DNA template
Classification: REPLICATION/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-10-23
Authors: Allwein, B., Batra, S., Remus, D., Hite, R.
PDB entry 9e30: Discovery of Potent, Highly Selective and Efficacious SMARCA2 Degraders - Compound 13
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-10-23
Authors: Strickland, C., Rice, C.
PDB entry 9e31: Discovery of Potent, Highly Selective and Efficacious SMARCA2 Degraders - Compound 6
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-10-23
Authors: Strickland, C., Rice, C.
PDB entry 9e32: Holo Polaromonas naphthalenivorans phosphoenolpyruvate carboxykinase
Classification: LYASE
Source organism: Polaromonas naphthalenivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2024-10-23
Authors: McLeod, M.J., Holyoak, T.
PDB entry 9e33: Polaromonas naphthalenivorans phosphoenolpyruvate carboxykinase in complex with PEP (C2221)
Classification: LYASE
Source organism: Polaromonas naphthalenivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-10-23
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T.
PDB entry 9e34: Polaromonas naphthalenivorans phosphoenolpyruvate carboxykinase in complex with PEP (P212121)
Classification: LYASE
Source organism: Polaromonas naphthalenivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-10-23
Authors: McLeod, M.J., Holyoak, T.
PDB entry 9e35: Polaromonas naphthalenivorans phosphoenolpyruvate carboxykinase in complex with beta-sulfopyruvate
Classification: LYASE
Source organism: Polaromonas naphthalenivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-10-23
Authors: McLeod, M.J., Holyoak, T.
PDB entry 9e36: Polaromonas naphthalenivorans phosphoenolpyruvate carboxykinase in complex with beta-sulfopyruvate and GTP
Classification: LYASE
Source organism: Polaromonas naphthalenivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-23
Authors: McLeod, M.J., Holyoak, T.
PDB entry 9e37: Polaromonas naphthalenivorans phosphoenolpyruvate carboxykinase in complex with oxalate and GTP
Classification: LYASE
Source organism: Polaromonas naphthalenivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-10-23
Authors: McLeod, M.J., Holyoak, T.
PDB entry 9e38: Polaromonas naphthalenivorans phosphoenolpyruvate carboxykinase in complex with phosphoglycolic acid and GDP
Classification: LYASE
Source organism: Polaromonas naphthalenivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-10-23
Authors: McLeod, M.J., Holyoak, T.
PDB entry 9e39: Gag CA-SP1 (T8I) immature lattice bound with Bevirimat from enveloped virus like particles
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1 (HBX2 ISOLATE)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-10-23
Authors: Wu, C., Meuser, M.E., Xiong, Y.
PDB entry 9e3a: Cryo-EM structure of PRMT5/WDR77 in complex with 6S complex (pICln PBM local refinement)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-10-23
Authors: Jin, C.Y., Hunkeler, M., Fischer, E.S.
PDB entry 9e3b: Cryo-EM structure of PRMT5/WDR77 in complex with 6S complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-10-23
Authors: Jin, C.Y., Hunkeler, M., Fischer, E.S.
PDB entry 9e3c: Cryo-EM structure of PRMT5/WDR77 in complex with 6S complex (GRG local refine)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-10-23
Authors: Jin, C.Y., Hunkeler, M., Fischer, E.S.
PDB entry 9e3d: Cryo-EM structure of DNMT 3A2/3B3 tetramer in complex with a di-nucleosome with K120R mutant H2B
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-10-23
Authors: Xie, X., Liu, M., Zhou, X.E., Worden, E., Jones, P.
PDB entry 9e3e: Torpedo muscle-type nicotinic acetylcholine receptor - Diliganded State
Classification: MEMBRANE PROTEIN
Source organism: Tetronarce californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-23
Authors: Thompson, M.J., Nury, H., Zarkadas, E., Baenziger, J.E.
PDB entry 9e3f: Torpedo muscle-type nicotinic acetylcholine receptor - Unliganded State
Classification: MEMBRANE PROTEIN
Source organism: Tetronarce californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-23
Authors: Thompson, M.J., Nury, H., Zarkadas, E., Baenziger, J.E.
PDB entry 9e3g: Torpedo muscle-type nicotinic acetylcholine receptor - Monoliganded State
Classification: MEMBRANE PROTEIN
Source organism: Tetronarce californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-10-23
Authors: Thompson, M.J., Nury, H., Zarkadas, E., Baenziger, J.E.
PDB entry 9e3h: Cryo EM structure of pertussis toxin in complex with neutralizing Fab PERT-61
Classification: TOXIN/Immune System
Source organism: Bordetella pertussis; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-23
Authors: Binshtein, E., Crowe, J.E.
PDB entry 9e3i: The primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB)
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-23
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9e3j: Cryo EM structure of pertussis toxin in complex with neutralizing Fab PERT-171
Classification: TOXIN/Immune System
Source organism: Bordetella pertussis; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-10-23
Authors: Binshtein, E., Crowe, J.E.
PDB entry 9e3k: Cryo EM structure of pertussis toxin in complex with neutralizing Fab PERT-199
Classification: TOXIN/Immune System
Source organism: Bordetella pertussis; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-23
Authors: Binshtein, E., Crowe, J.E.
PDB entry 9e3l: Cryo EM structure of pertussis toxin in complex with neutralizing Fab PERT-169 and PERT-203
Classification: TOXIN/Immune System
Source organism: Bordetella pertussis; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-23
Authors: Binshtein, E., Crowe, J.E.
PDB entry 9e3m: Cryo-EM structure of the human P2X7 receptor in the apo closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2024-10-23
Authors: Oken, A.C., Turcu, A.L., Vazquez, S., Mansoor, S.E.
PDB entry 9e3n: Cryo-EM structure of the human P2X7 receptor in the ATP-bound open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-10-23
Authors: Oken, A.C., Turcu, A.L., Vazquez, S., Mansoor, S.E.
PDB entry 9e3o: Cryo-EM structure of the human P2X7 receptor in the UB-ALT-P30-bound inhibited state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-10-23
Authors: Oken, A.C., Turcu, A.L., Vazquez, S., Mansoor, S.E.
PDB entry 9e3p: Cryo-EM structure of the human P2X7 receptor in the UB-MBX-46-bound inhibited state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-10-23
Authors: Oken, A.C., Turcu, A.L., Vazquez, S., Mansoor, S.E.
PDB entry 9e3q: Cryo-EM structure of the mouse P2X7 receptor in the apo closed state
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-10-23
Authors: Oken, A.C., Turcu, A.L., Vazquez, S., Mansoor, S.E.
PDB entry 9e3r: Cryo-EM structure of PWWP domain deleted DNMT 3A2/3B3 in complex with a di-nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2024-10-23
Authors: Xie, X., Liu, M., Zhou, X.E., Worden, E., Jones, P.
PDB entry 9e3s: Tricomplex of RMC-9945, KRAS G12N, and CypA
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2024-10-23
Authors: Zhang, D., Bar Ziv, T., Knox, J.E., Yano, J.K.
PDB entry 9e3t: RTA-RUNT-165 complex
Classification: TOXIN,HYDROLASE/INHIBITOR
Source organism: Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-24
Authors: Rudolph, M.J., Tumer, N.
PDB entry 9e3u: Cryo-EM structure of DNMT 3A2/3B3 tetramer bound to a di-nucleosome with a 25 base-pair linker
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2024-10-24
Authors: Xie, X., Zhou, X.E., Worden, E., Jones, P.
PDB entry 9e3v: Backbone Modification in the Fungal Defensin Plectasin: Prototype NZ2114
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-10-24
Authors: Harmon, T.W., Song, J., Gulewicz, A.J., Di, Y.P., Horne, W.S.
PDB entry 9e3w: Backbone Modification in the Fungal Defensin Plectasin: beta3-Residues in the helix
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-10-24
Authors: Harmon, T.W., Song, J., Gulewicz, A.J., Di, Y.P., Horne, W.S.
PDB entry 9e3x: Backbone Modification in the Fungal Defensin Plectasin: Calpha-methyl-residues in the helix
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-10-24
Authors: Harmon, T.W., Song, J., Gulewicz, A.J., Di, Y.P., Horne, W.S.
PDB entry 9e3y: Backbone Modification in the Fungal Defensin Plectasin: D- and Calpha-methyl-residues in the turns
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-10-24
Authors: Harmon, T.W., Song, J., Gulewicz, A.J., Di, Y.P., Horne, W.S.
PDB entry 9e3z: Backbone Modification in the Fungal Defensin Plectasin: Calpha-methyl-residues in the helix, D- and Calpha-methyl-residues in the turns
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-10-24
Authors: Harmon, T.W., Song, J., Gulewicz, A.J., Di, Y.P., Horne, W.S.
PDB entry 9e40: RTA-RUNT-202 complex
Classification: TOXIN,HYDROLASE/INHIBITOR
Source organism: Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-24
Authors: Rudolph, M.J., Tumer, N.
PDB entry 9e41: Asymmetric unit of yPOWV
Classification: VIRAL PROTEIN
Source organism: Deer tick virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-10-24
Authors: Das, S., Hafenstein, S.
PDB entry 9e42: RTA-RUNT-192 complex
Classification: TOXIN,HYDROLASE/INHIBITOR
Source organism: Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-24
Authors: Rudolph, M.J., Tumer, N.
PDB entry 9e49: Cryo-EM structure of a di-nucleosome with an eight base-pair linker
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.93 Å
Deposited: 2024-10-24
Authors: Xie, X., Liu, M., Zhou, X.E., Worden, E., Jones, P.
PDB entry 9e4a: Human ASIC1a at pH 8.5 with domain-swapped transmembrane domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4b: Human ASIC1a at pH 7.5 with domain-swapped transmembrane domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4c: Human ASIC1a at pH 7.5 with partial transmembrane domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.