LiteFold/PDB huggingface dataset:
PDB entry 9u3w: Crystal structure of the ribokinase RBK1 in complex with ribose from Saccharomyces cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2025-03-18
Authors: Yang, X.Y., Liu, X.H.
PDB entry 9u42: Crystal Structure of Homogentisate 1,2-Dioxygenase from Acinetobacter in Complex with Zn ion
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-03-19
Authors: Seo, P.-W., Hwangbo, S.-A., Park, S.-Y.
PDB entry 9u46: The X-ray structure of N-terminal catalytic domain of Thermoplasma acidophilum tRNA methyltransferase Trm56 (Ta0931) in complex with 5'-Methylthioadenosine
Classification: TRANSFERASE
Source organism: Thermoplasma acidophilum DSM 1728
Experimental method: X-RAY DIFFRACTION
Resolution: 1.992 Å
Deposited: 2025-03-19
Authors: Fukumoto, S., Hasegawa, T., Ototake, M., Moriguchi, S., Namba, M., Yamagamai, R., Kawamura, T., Hirata, A., Hori, H.
PDB entry 9u47: Cryo-EM structure of spMETTL16 in complex with U6 snRNA_delta17
Classification: TRANSFERASE/RNA
Source organism: Schizosaccharomyces pombe; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-19
Authors: Ju, J., Tomita, K.
PDB entry 9u48: Cryo-EM structure of spMETTL16 in complex with U6 snRNA and SAM
Classification: TRANSFERASE/RNA
Source organism: Schizosaccharomyces pombe; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-03-19
Authors: Ju, J., Tomita, K.
PDB entry 9u49: crystal structure of Cdn1 in complex with cA4
Classification: RNA BINDING PROTEIN/RNA
Source organism: Psychrobacter lutiphocae DSM 21542; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-03-19
Authors: Zhang, W.
PDB entry 9u4e: Cryo-EM structure of the human CRP-CPS23F complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-03-19
Authors: Chen, D.Y., Xie, Y.F., Gao, F., Qi, J.X., Zhang, J.R.
PDB entry 9u4i: Serine Beta-Lactamase OXA-48 in complex with Dual MBL/SBL inhibitor FB1-1
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.852 Å
Deposited: 2025-03-19
Authors: Li, G.-B., Liang, G.-Q.
PDB entry 9u4j: Cryo-EM structure of the hGPR4-apo Receptor in pH 7.8
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli O157:H7; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-19
Authors: Zhong, Y.N., Liu, Z.L., Guo, L.L., Sun, J.P., Yang, F.
PDB entry 9u4k: Serine Beta-Lactamase OXA-48 in complex with Dual MBL/SBL inhibitor FB3-4
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.178 Å
Deposited: 2025-03-19
Authors: Li, G.-B., Liang, G.-Q.
PDB entry 9u4l: Fibril structure of human alphaA-crystallin with pathogenic mutation R116C
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-03-19
Authors: Cao, Q., Song, M.
PDB entry 9u4m: Focused refinement of 19S in the substrate-engaged human 26S proteasome bound to midnolin with RPT6 at top of spiral staircase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2025-03-19
Authors: Zhu, C., Qin, L., Liang, L.
PDB entry 9u4p: Human Keratin 19 tail domain Q387-L400 in solution
Classification: CYTOSOLIC PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-03-19
Authors: Ji, Y., Jeong, M., Kim, J., Lee, C.H.
PDB entry 9u4q: Human Keratin 19 tail domain Q387-L400 in 30% 2,2,2-trifluoroethanol
Classification: CYTOSOLIC PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-03-19
Authors: Ji, Y., Jeong, M., Kim, J., Lee, C.H.
PDB entry 9u4r: Structure of the intial complex in filament assembly at 3.23 angstroms resolution, conformation 2.
Classification: PROTEIN FIBRIL
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-03-20
Authors: Chen, L.X., Jiang, W.X., Cheng, X.Q., Dong, X., Xing, Q.
PDB entry 9u4s: Crystal Structure of PI5P4K-gamma in complex with n40
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-03-20
Authors: Zhao, W.F., Xu, Y.C.
PDB entry 9u4t: Cryo-EM map of MSMEG_3496 in complex with AcpM, size exclusion chromatography peak1
Classification: MEMBRANE PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-03-20
Authors: Gao, F., Zhang, X., Li, D., Ma, X.
PDB entry 9u4u: Structure of the functional amyloid FapC from Pseudomonas sp.UK4
Classification: PROTEIN FIBRIL
Source organism: Pseudomonas sp. UK4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-20
Authors: Cao, Q., Yanting, J., Wang, H.
PDB entry 9u4v: Cryo-EM map of MSMEG_3496 in complex with AcpM, size exclusion chromatography peak2
Classification: MEMBRANE PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-03-20
Authors: Gao, F., Zhang, X., Li, D., Ma, X.
PDB entry 9u4w: cryo-EM structure of pig GnRHR bound with mammal GnRH
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-03-20
Authors: Shen, S., Xu, H.E.
PDB entry 9u4x: Crystal Structure of Alcohol Dehydrogenase from Anoxybacillus geothermalis D9
Classification: OXIDOREDUCTASE
Source organism: Anoxybacteroides rupiense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-03-20
Authors: Riem, E.A.A., Kamarudin, N.H.A., Ali, M.S.M., Noor, N.D.M.
PDB entry 9u4y: cryo-EM structure of Xenopus laevis GnRHR bound with mammal GnRH
Classification: MEMBRANE PROTEIN
Source organism: Ateles; Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-03-20
Authors: Shen, S., Xu, H.E.
PDB entry 9u50: GDP-bound KRAS G12V in complex with MCB-294
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-03-20
Authors: Li, K.K., Guo, R.-T.
PDB entry 9u51: Cryo-EM structure of Mycobacterium tuberculosis MmpL5 in complex with AcpM
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv); Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-03-20
Authors: Gao, F., Zhang, X., Li, D., Ma, X.
PDB entry 9u53: Crystal structure of the CYP154C2 Q230A from Streptomyces avermitilis
Classification: OXIDOREDUCTASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-03-20
Authors: Xu, L.H.
PDB entry 9u54: Structure of Phosphopantetheine adenylyltransferase (PPAT) from Enterobacter spp. with the 17-mer expression tag bound in the substrate binding site of a neighbouring molecule at 2.10 A resolution.
Classification: TRANSFERASE
Source organism: Enterobacter sp. 638
Experimental method: X-RAY DIFFRACTION
Resolution: 2.101 Å
Deposited: 2025-03-20
Authors: Ahmad, N., Sharma, P., Sharma, S., Singh, T.P.
PDB entry 9u55: Cryo-EM structure of human OAT1 in complex with probenecid
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-03-20
Authors: Zhang, W., Zhang, Y.
PDB entry 9u56: Cryo-EM structure of AtABCC2 in apo form
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-03-20
Authors: Dong, J.Q., Yang, T.-L., Yang, G.-F.
PDB entry 9u57: Cryo-EM structure of dimeric AtABCC2
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2025-03-20
Authors: Yang, G.-F., Dong, J.Q., Yang, T.-L.
PDB entry 9u58: Cryo-EM structure of AZ-GS bound AtABCC2
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-03-20
Authors: Dong, J., Yang, T.-L., Yang, G.-F.
PDB entry 9u5a: Cryo-EM structure of human OAT4 in complex with DHEAS
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-03-21
Authors: Zhang, W., Chu, Y., Zhang, Y.
PDB entry 9u5b: T200H Carbonic Anhydrase II pH 7.8 5 atm CO2
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-03-21
Authors: Lim, S.W., Kim, C.U.
PDB entry 9u5c: Structure of hTRPC3 in complex with Nb1-94 at 2.25 angstrom
Classification: METAL TRANSPORT
Source organism: Camelus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2025-03-21
Authors: Chen, L., Chen, Y., Zang, J.
PDB entry 9u5g: Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrC-T225Y mutant from Vibrio cholerae
Classification: MEMBRANE PROTEIN
Source organism: Vibrio cholerae O395
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-03-21
Authors: Ishikawa-Fukuda, M., Kishikawa, J.
PDB entry 9u5h: Crystal structure of MTAP from Aeropyrum pernix complex with MTA at 333K, Soaked in potassium phosphate pH7.0 with MTA
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-03-21
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9u5i: Crystal structure of MTAP from Aeropyrum pernix complex with MTA at 293K, Soaked in potassium phosphate pH7.0 with MTA
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2025-03-21
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9u5l: 4-alpha-glucanotransferase from Thermus thermophilus STB20
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-21
Authors: Li, Z.F., Tian, Y.X., Xiao, Y., Ban, X.F.
PDB entry 9u5n: Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q89E variant (complex with FMN)
Classification: FLUORESCENT PROTEIN
Source organism: Chloroflexus aggregans (strain MD-66 / DSM 9485)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2025-03-21
Authors: Nikolaev, A., Markeeva, E., Kovalev, K., Gushchin, I.
PDB entry 9u5p: HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-dimer conformation
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; rhinovirus B14; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-03-21
Authors: Yang, B., Wang, Q., Sun, S.W., Zhang, X.
PDB entry 9u5q: HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1
Classification: RNA BINDING PROTEIN/IMMUNE SYSTEM/RNA
Source organism: Homo sapiens; rhinovirus B14; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2025-03-21
Authors: Yang, B., Wang, Q., Sun, S.W., Zhang, X.
PDB entry 9u5r: HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation 2
Classification: RNA BINDING PROTEIN/IMMUNE SYSTEM/RNA
Source organism: Homo sapiens; rhinovirus B14; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2025-03-21
Authors: Yang, B., Wang, Q., Sun, S.W., Zhang, X.
PDB entry 9u5s: The structure of the BfpBG complex in the T4bP system
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli O127:H6 str. E2348/69
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2025-03-21
Authors: Pei, C.C., Sun, H., Yin, M.
PDB entry 9u5t: GDP-bound KRAS G12D in complex with MCB-294
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-21
Authors: Li, K.K., Guo, R.-T.
PDB entry 9u5u: The 1:1 cryo-EM structure of BAP1/ASXL1-K351Ub in complex with H2AK119Ub nucleosome
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-03-21
Authors: Ai, H.S., Liu, L.
PDB entry 9u5v: Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q89E variant (complex with LC)
Classification: FLUORESCENT PROTEIN
Source organism: Chloroflexus aggregans (strain MD-66 / DSM 9485)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.663 Å
Deposited: 2025-03-22
Authors: Nikolaev, A., Markeeva, E., Remeeva, A., Borshchevsky, V., Gushchin, I.
PDB entry 9u5w: Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Lys181Met/Trp185Tyr/His280Ala with 2-fluoro-3-phenylpropanoic acid
Classification: TRANSFERASE
Source organism: Rhodopseudomonas palustris CGA009
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08002 Å
Deposited: 2025-03-22
Authors: Huang, H.S., Zhang, Z.M.
PDB entry 9u5x: Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Lys181Met/His280Ala with 2-fluoro-3-phenylpropanoic acid
Classification: TRANSFERASE
Source organism: Rhodopseudomonas palustris CGA009
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-03-22
Authors: Huang, H.S., Zhang, Z.M.
PDB entry 9u5y: Crystal structure of cytochrome P450 mutant-T288G S289Q G290E T291I of CYP161H12 from Amycolatopsis pretoriensis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Amycolatopsis pretoriensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-03-22
Authors: Dong, L.B., Zhang, X.W., Wang, Y.X., Pan, X.M., Liu, C.H.
PDB entry 9u5z: C3 convertases zymogen C4b2 in activation state
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-22
Authors: Yang, X.K., Xiao, J.Y.
PDB entry 9u60: C3 convertases zymogen C4b2 in loading state
Classification: IMMUNOSUPPRESSANT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-22
Authors: Yang, X.K., Xiao, J.Y.
PDB entry 9u61: CP/MBL pathways C3 convertase C4b2a and C3 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-22
Authors: Yang, X.K., Xiao, J.Y.
PDB entry 9u62: AP pathways C3 convertase C3bBbP and C3 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-03-22
Authors: Yang, X.K., Xiao, J.Y.
PDB entry 9u64: Crystal structure of human glutaminyl cyclase in complex with Inhibitor CL21
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.266 Å
Deposited: 2025-03-22
Authors: Li, G.-B., Meng, F.-B., Chen, Y.-T.
PDB entry 9u65: Structure of HN HA at pH 7.0 (conformation2).
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-03-22
Authors: Deng, G.J., Sun, H.L., Peng, Q.
PDB entry 9u66: Structure of HN HA at pH 6.4 (conformation3).
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2025-03-22
Authors: Deng, G.J., Sun, H.L., Peng, Q.
PDB entry 9u67: Structure of HN HA at pH 6.4 (conformation4).
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-03-22
Authors: Deng, G.J., Sun, H.L., Peng, Q.
PDB entry 9u68: Structure of HN-113S HA at pH 7.0.
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2025-03-22
Authors: Deng, G.J., Sun, H.L., Peng, Q.
PDB entry 9u69: Structure of HN-113S HA at pH 6.4.
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2025-03-22
Authors: Deng, G.J., Sun, H.L., Peng, Q.
PDB entry 9u6a: Tubulin-DARPin D1 in complex with a flavone
Classification: CELL CYCLE
Source organism: Sus scrofa; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-03-22
Authors: Yan, W., Yang, J.
PDB entry 9u6d: Crystal structure of tubulin-RB3-TTL in complex with X8
Classification: CELL CYCLE
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2025-03-23
Authors: Yan, W., Yang, J.H.
PDB entry 9u6e: FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-03-23
Authors: Liu, P., Luo, D.
PDB entry 9u6f: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes, state1
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6g: Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes, state1
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Gerle, C., Shigematsu, H., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6h: Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes, state2
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6i: Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes, state3
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6j: Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, State3A
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6k: Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, State3B
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6l: Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, State3C
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.67 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6m: Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, state3D
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.64 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6n: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under no pmf condition, state1W
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6o: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under no pmf condition, state1M
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6p: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under no pmf condition, state1N
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6q: Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state1
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6r: Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state2
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6s: Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state3
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6t: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state1W
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6u: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state1M
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6v: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state1N
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6w: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3W
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6x: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3M
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6y: Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3N
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-23
Authors: Nakano, A., Kishikawa, J., Nishida, Y., Shigematsu, H., Gerle, C., Mitsuoka, M., Yokoyama, K.
PDB entry 9u6z: INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE AND RNAS WITH A SINGLE BULGE
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2025-03-23
Authors: Ichijo, R., Kawai, G.
PDB entry 9u70: INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE AND RNAS WITH A SINGLE BULGE
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2025-03-23
Authors: Ichijo, R., Kawai, G.
PDB entry 9u74: Respiratory Syncytial Virus pre-F trimer bound by neutralizing antibody PR306007
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Respiratory syncytial virus A2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.08 Å
Deposited: 2025-03-24
Authors: Zheng, Z., Zixian, S., Rui, F., Yu, G.
PDB entry 9u75: 5hmC specific restriction endonuclease Escherichia coli E. coli O157:H7 PD-T4-3
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2025-03-24
Authors: Yu, Y., Liu, R.
PDB entry 9u76: Crystal Structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix complex with 5'-Deoxy-5'-methylthioadenosine 353K 1.77 angstrom
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-03-24
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9u77: Crystal structure of Glycogen branching enzyme (VvGBE) from Vibrio vulnificus MO6-24/O
Classification: TRANSFERASE
Source organism: Vibrio vulnificus MO6-24/O
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-24
Authors: An, Y., Lee, S.J., Park, J.T., Woo, E.J.
PDB entry 9u78: Single Chain Protein of De Novo Designed Helix Bundles-4EH2 with KDPV Loop
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-24
Authors: Du, G.M., Zhang, S.-Q., Liu, L.J.
PDB entry 9u79: Crystal structure of MTAP from Aeropyrum pernix complex with MTA at 100K, Soaked in potassium phosphate pH7.0 with MTA
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2025-03-24
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9u7a: FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-03-24
Authors: Liu, P., Luo, D.
PDB entry 9u7b: Crystal structure of Rv0042c
Classification: GENE REGULATION
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-24
Authors: Karthikeyan, S., Sharma, C., Basra, V., Seth, S.
PDB entry 9u7d: Crystal structure of SARS-CoV-2 papain-like protease (Cys111Ser) in complex with YL1004
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-03-24
Authors: Zeng, R., Deng, X.Y., Yu, J., Yang, S.Y., Lei, J.
PDB entry 9u7e: FGFR2 kinase domain with a macrocyclic compound 8g
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-03-24
Authors: Chen, X.J., Chen, Y.H.
PDB entry 9u7f: structure of human KCNQ1-KCNE1-CaM complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-24
Authors: Hou, P.P., Zhang, J., Wan, S.Y., Cheng, X.Y., Zhong, L., Hu, B.
PDB entry 9u7g: FGFR1 kinase domain with a macrocyclic compound 8g
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-03-24
Authors: Chen, X.J., Chen, Y.H.
PDB entry 9u7h: Complex structure of a glycosyltransferase
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-03-24
Authors: Yu, H.J., Zhang, M., Sun, H.H., Liu, X.T.
PDB entry 9u7i: Dimer structure of a glycosyltransferase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-24
Authors: Yu, H.J., Zhang, M., Sun, H.H., Liu, X.T.
PDB entry 9u7j: Oligomer structure of a glycosyltransferase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-24
Authors: Yu, H.J., Zhang, M., Sun, H.H., Liu, X.T.
PDB entry 9u7m: Solution NMR structure of SA-XV peptide bound to SDS micelle.
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-03-24
Authors: Biswas, K., Bhunia, A., Roy, S.
PDB entry 9u7n: Tetrameric cystathionine beta-synthase of Mycobacterium tuberculosis bound to O-Benzylhydroxylamine
Classification: LYASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.19 Å
Deposited: 2025-03-25
Authors: Polepalli, S., Roy, A., Mondal, B., Dutta, S.
PDB entry 9u7o: Tetrameric cystathionine beta-synthase of Mycobacterium tuberculosis bound to AOAA
Classification: LYASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2025-03-25
Authors: Roy, A., Polepalli, S., Mondal, B., Dutta, S.
PDB entry 9u7q: Chitinase ChiA mutant - C61A/C79A
Classification: HYDROLASE
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-25
Authors: Qipeng, C., Jinghan, Z.
PDB entry 9u7r: Substrate-free human 26S proteasome purified by midnolin, 20S proteasome, RPTs and RPN11 part
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-03-25
Authors: Zhu, C., Qin, L., Liang, L.
PDB entry 9u7s: FGFR2 kinase domain with a macrocyclic compound 8r
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-03-25
Authors: Chen, X.J., Chen, Y.H.
PDB entry 9u7t: Structure of the human DCAF8-DDB1 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-25
Authors: Shen, M., Zhang, H.
PDB entry 9u7u: 5hmC specific restriction endonuclease Escherichia coli APEC O1 PD-T4-3
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli APEC O1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.194 Å
Deposited: 2025-03-25
Authors: Yu, Y., Liu, R.
PDB entry 9u7v: The X-ray Crystallographic Structure of oligo-1,6-glucosidase from Paenibacillus sp. STB16
Classification: HYDROLASE
Source organism: Paenibacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2025-03-25
Authors: Li, Z.F., Tian, Y.X., Zhang, J.S., Ban, X.F.
PDB entry 9u7w: Crystal structure of the CYP105D18 double mutant F184A/F191A from Streptomyces laurentii
Classification: OXIDOREDUCTASE
Source organism: Streptomyces laurentii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.09 Å
Deposited: 2025-03-25
Authors: Qin, M.M., Cong, Z.Q., Wang, Q.J.
PDB entry 9u7x: Crystal structure of the CYP105D18 mutant F191A from Streptomyces laurentii
Classification: OXIDOREDUCTASE
Source organism: Streptomyces laurentii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-03-25
Authors: Qin, M.M., Cong, Z.Q., Wang, Q.J.
PDB entry 9u7y: Structure of the tip region of the intial complex in bacterial flagellar filament assembly at 3.68 angstroms resolution, conformation 3.
Classification: PROTEIN FIBRIL
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2025-03-25
Authors: Chen, L.X., Jiang, W.X., Cheng, X.Q., Dong, X., Xing, Q.
PDB entry 9u7z: 5hmC specific restriction endonuclease Escherichia coli APEC O1 PD-T4-3 in complex with 5-Hydroxymethyl-dCTP
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli APEC O1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.153 Å
Deposited: 2025-03-25
Authors: Yu, Y., Liu, R.
PDB entry 9u80: Cryo-EM structure of conivaptan-bound human vasopressin V2 receptor complex with Fab
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-03-25
Authors: Jiang, Y., You, C.Z., Zhang, T.W., Xu, Y.W., Tan, Y.X.
PDB entry 9u81: Cryo-EM structure of tolvaptan-bound human vasopressin V2 receptor complex with Fab
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-03-25
Authors: Jiang, Y., You, C.Z., Zhang, T.W., Xu, Y.W., Tan, Y.X.
PDB entry 9u82: Cryo-EM structure of Leminorella grimontii GatC in the presence of D-xylose
Classification: TRANSPORT PROTEIN
Source organism: Leminorella grimontii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-03-25
Authors: Takahashi, Y.S., Kohga, H., Shigematsu, H., Miyazaki, R., Tsukazaki, T.
PDB entry 9u83: Structure of AA(GGGTT)3GGGAA G-quadruplex in the presence of sodium ions
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2025-03-25
Authors: Negi, D., Sannapureddi, R.K.R., Sathyamoorthy, B.
PDB entry 9u84: Cryo-EM structure of Leminorella grimontii GatC in the absence of D-xylose
Classification: TRANSPORT PROTEIN
Source organism: Leminorella grimontii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-03-25
Authors: Takahashi, Y.S., Kohaga, H., Shigematsu, H., Miyazaki, R., Tsukazaki, T.
PDB entry 9u89: Structure of AA(GGGTT)3GGGAA G-quadruplex in the presence of potassium ions
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2025-03-26
Authors: Negi, D., Sannapureddi, R.K.R., Sathyamoorthy, B.
PDB entry 9u8b: Structure of THIK1 complexed with C101248
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-03-26
Authors: Dai, Z., Yin, Y.X.
PDB entry 9u8c: Crystal structure of EGFR exon20 insertion mutant in complex with enozertinib (ORIC-114)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-03-26
Authors: Kim, H., Park, Y., Cho, H.
PDB entry 9u8d: 5hmC specific restriction endonuclease Escherichia coli O157:H7 PD-T4-3 in complex with 5-Hydroxymethyl-dCTP
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.002 Å
Deposited: 2025-03-26
Authors: Yu, Y., Liu, R.
PDB entry 9u8e: Crystal structure of Leminorella grimontii GatC in the presence of D-xylose
Classification: TRANSPORT PROTEIN
Source organism: Leminorella grimontii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2025-03-26
Authors: Takahashi, Y.S., Kohga, H., Yamamoto, K., Takahashi, J.F., Tanaka, Y., Ichikawa, M., Miyazaki, R., Tsukazaki, T.
PDB entry 9u8g: Crystal structure of TMPRSS2 in complex with nanobody77_10
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-26
Authors: Duan, Y., Zhao, Z., Liu, X., Wang, H., Yang, H.
PDB entry 9u8h: Crystal structure of Leminorella grimontii GatC in the absence of D-xylose
Classification: TRANSPORT PROTEIN
Source organism: Leminorella grimontii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å
Deposited: 2025-03-26
Authors: Takahashi, Y.S., Kohga, H., Yamamoto, K., Takahashi, J.F., Tanaka, Y., Ichikawa, M., Miyazaki, R., Tsukazaki, T.
PDB entry 9u8k: Structure of ASC-PYD filament from condensates
Classification: IMMUNE SYSTEM
Source organism: human gammaherpesvirus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-03-26
Authors: Gao, P., Li, Q.J., Li, Z.L.
PDB entry 9u8l: Crystal structure of KRAS-G12D/Y96S mutant in complex with MRTX-1133
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u8m: Drosophila melanogaster Nicotinamidase in Complex with Inhibitor CN2
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.758 Å
Deposited: 2025-03-26
Authors: Li, G.-B., Chen, Y.-T.
PDB entry 9u8n: Crystal structure of cupin-domain containing protein (AzcA) forming triazine (6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid) moiety from Streptomyces mobaraensis in complex with manganese and imidazole
Classification: OXIDOREDUCTASE
Source organism: Streptomyces mobaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-03-26
Authors: Nakashima, Y., Tsunoda, T., Ogasawara, Y., Dairi, T., Morita, H.
PDB entry 9u8o: Crystal structure of cupin-domain containing protein (AzcA) forming triazine (6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid) moiety from Streptomyces mobaraensis in complex with manganese and 2,5,6-triaminopyrimidin-4(3H)-one.
Classification: OXIDOREDUCTASE
Source organism: Streptomyces mobaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2025-03-26
Authors: Nakashima, Y., Tsunoda, T., Ogasawara, Y., Dairi, T., Morita, H.
PDB entry 9u8p: Crystal structure of cupin-domain containing protein (AzcA) forming triazine (6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid) moiety from Streptomyces mobaraensis in complex with manganese and 6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid.
Classification: OXIDOREDUCTASE
Source organism: Streptomyces mobaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2025-03-26
Authors: Nakashima, Y., Tsunoda, T., Ogasawara, Y., Dairi, T., Morita, H.
PDB entry 9u8q: Crystal structure of thiamine pyrophosphate (TPP)-dependent alpha-imino acid decarboxylase (AzcB and AzcC) from Streptomyces mobaraensis in complex with TPP.
Classification: LYASE
Source organism: Streptomyces mobaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-03-26
Authors: Nakashima, Y., Tsunoda, T., Ogasawara, Y., Dairi, T., Morita, H.
PDB entry 9u8r: Crystal structure of thiamine pyrophosphate (TPP)-dependent alpha-imino acid decarboxylase (AzcB and AzcC) from Streptomyces mobaraensis in complex with TTPP and 6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid.
Classification: LYASE
Source organism: Streptomyces mobaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2025-03-26
Authors: Nakashima, Y., Tsunoda, T., Ogasawara, Y., Dairi, T., Morita, H.
PDB entry 9u8s: Crystal structure of thiamine pyrophosphate (TPP)-dependent alpha-imino acid decarboxylase (AzcB and AzcC) from Streptomyces mobaraensis in complex with TPP and 5-azacytosine.
Classification: LYASE
Source organism: Streptomyces mobaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2025-03-26
Authors: Nakashima, Y., Tsunoda, T., Ogasawara, Y., Dairi, T., Morita, H.
PDB entry 9u8t: Crystal structure of KRAS-G12D/R68M mutant in complex with MRTX-1133
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u8u: Crystal structure of KRAS-G12D/Q61H mutant in complex with MRTX-1133
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u8v: Crystal structure of KRAS-G12D/Y96S mutant in complex with GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u8w: Crystal structure of KRAS-G12D/Q99L mutant in complex with GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u8x: Crystal structure of KRAS-G12D/R68M mutant in complex with GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u8y: Crystal structure of KRAS-G12D/G13D mutant in complex with GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u8z: Crystal structure of KRAS-G12D/Q61H mutant in complex with GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u90: Crystal structure of KRAS-G12D/E62K mutant in complex with GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-03-26
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u91: Complex of compound 31r and EGFR Del19/T790M/C797S/V948R
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-03-26
Authors: Yun, C.H., Yan, X.E., Hao, J., Zhang, Y.D.
PDB entry 9u92: Cryo-EM structure of Tetrahymena DNA methyltransferase complex MTA1c
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-03-26
Authors: Xu, Q., Shi, Z.B.
PDB entry 9u93: Cryo-EM structure of Fusobacterium nucleatum CbpF in complex with human CEACAM5
Classification: CELL ADHESION
Source organism: Fusobacterium nucleatum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-03-27
Authors: Li, L.J., Shen, F., Zhao, X., Gao, G.F.
PDB entry 9u94: Cryo-EM structure of Fusobacterium nucleatum CbpF in complex with human CEACAM1
Classification: CELL ADHESION
Source organism: Fusobacterium nucleatum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Deposited: 2025-03-27
Authors: Li, L.J., Shen, F., Zhao, X., Gao, G.F.
PDB entry 9u95: Crystal structure of KRAS-G12D/Q99L mutant in complex with MRTX-1133
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-27
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u96: SARS-CoV2 Main protease(Mpro) complexed with TAB1 peptide
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.43 Å
Deposited: 2025-03-27
Authors: Fu, X.
PDB entry 9u97: Crystal structure of KRAS-G12D/G13D mutant in complex with MRTX-1133
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-03-27
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u98: Glycoside hydrolase family 1 beta-glucosidase (E318G mutant) from Streptomyces griseus (sophorose complex)
Classification: HYDROLASE
Source organism: Streptomyces griseus subsp. griseus NBRC 13350
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-03-27
Authors: Kumakura, H., Motouchi, S., Nakai, H., Nakajima, M.
PDB entry 9u99: Crystal structure of KRAS-G12D/E62K mutant in complex with MRTX-1133
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-27
Authors: Zhang, X.L., Zhang, X.Y., Zhang, Y.Z., Xu, C., Liu, L., Bai, F.
PDB entry 9u9b: HBsAg in complex with HBC34 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Hepatitis B virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-03-27
Authors: Chen, L., He, X.
PDB entry 9u9c: Crystal structure of NDM-1 in complex with hydrolyzed amoxicillin
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-03-27
Authors: Shi, X., Zhang, Q., Liu, W.
PDB entry 9u9d: Bipartite Genetically Encoded Biosensor sG-GECO1
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria; Gallus gallus; Rattus norvegicus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-27
Authors: Wen, Y., Campbell, R.E.
PDB entry 9u9e: Cryo-EM structure of hemimethylated DNA-bound Tetrahymena DNA methyltransferase complex MTA1c
Classification: DNA BINDING PROTEIN/DNA
Source organism: synthetic construct; Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-03-27
Authors: Xu, Q., Shi, Z.B.
PDB entry 9u9f: Cryo-EM structure of Oryza sativa phosphate transporter SPDT
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa subsp. indica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-03-27
Authors: Fang, S., Zhang, X., Zhang, P.
PDB entry 9u9g: Crystal structure of antitoxin HipB from Pseudomonas fluorescens 2P24
Classification: ANTITOXIN
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-03-27
Authors: Song, Y.J., Zhang, S.P., Bao, R., He, Y.X.
PDB entry 9u9h: Surface Tubular Element of Vaccinia Virus
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Tian Tan)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-03-28
Authors: Yu, F., Jin, G., Liu, Y., Sun, Z., Lou, Z.
PDB entry 9u9i: M4-CTD-undocked AP-4 core in apo form
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-03-28
Authors: Wang, Y.H., Li, W.
PDB entry 9u9j: M4-CTD-docked AP-4 core in apo form
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-03-28
Authors: Wang, Y.H., Li, W.
PDB entry 9u9k: Cryo-EM structure of hemi-methylated DNA-bound Tetrahymena DNA methyltransferase complex MTA1c (MTA9-B)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Tetrahymena thermophila SB210; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-03-28
Authors: Xu, Q., Shi, Z.B.
PDB entry 9u9l: Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Trp185Tyr/His280Ala with 2-fluoro-3-phenylpropanoic acid
Classification: TRANSFERASE
Source organism: Rhodopseudomonas palustris CGA009
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46689 Å
Deposited: 2025-03-28
Authors: Huang, H.S., Zhang, Z.M.
PDB entry 9u9m: 2,2'-bipyridine linked DNA oligomer (CGCGAAT[BrU]CGCG) in the presence of Ni2+ ion
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-03-28
Authors: Atugi, T., Kanazawa, H., Sugiyama, Y., Fujiwara, S., Ono, A., Kondo, J.
PDB entry 9u9n: Solution structure of the Human Prostate stem cell antigen (PSCA), water-soluble domain
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-03-28
Authors: Kocharovskaya, M.V., Paramonov, A.S., Lyukmanova, E.N., Shenkarev, Z.O.