LiteFold/PDB huggingface dataset:
PDB entry 9m6t: Crystal structure of SARS-Cov-2 main protease H163A mutant in complex with Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-03-07
Authors: Zhou, X.L., Zhang, J., Li, J.
PDB entry 9m6u: Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-03-07
Authors: Li, W.W., Zhang, J., Li, J.
PDB entry 9m6v: Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-03-07
Authors: Zhou, X.L., Zhang, J., Li, J.
PDB entry 9m6w: Hexamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-07
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9m6x: Cryo-EM structure of bacteriophage NF5 neck
Classification: VIRAL PROTEIN
Source organism: Brochothrix phage NF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-03-07
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9m6y: Crystal structure of C1 domain from surface protein SlpM of Lactobacillus brevis
Classification: STRUCTURAL PROTEIN
Source organism: Levilactobacillus brevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-08
Authors: Xue, Y., Kang, X.
PDB entry 9m6z: Carotenoid Cleavage Dioxygenase 1 variant from Osmanthus fragrans A191M E408Q
Classification: PLANT PROTEIN
Source organism: Osmanthus fragrans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-03-08
Authors: Sharma, D., Xue, B.
PDB entry 9m70: Crystal Structure of the Carboxyltransferase Subunit of Acetyl-CoA carboxylase from Chloroflexus aurantiacus
Classification: LIGASE
Source organism: Chloroflexus aurantiacus J-10-fl
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2025-03-08
Authors: Shen, J.J., Wu, W.P., Xu, X.L.
PDB entry 9m71: AcrIE10 apo structure
Classification: DNA BINDING PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-03-09
Authors: Tsui, W.T., Ma, J.B.
PDB entry 9m72: ASFV p15 in complex with Fab 4E2
Classification: VIRAL PROTEIN
Source organism: African swine fever virus (strain Badajoz 1971 Vero-adapted); Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2025-03-09
Authors: Wang, X., Yu, Q., Fu, W.
PDB entry 9m73: Crystal structure of MBP-fused BIL1/BZR1 (21-104) in complex with double-stranded DNA contaning CACATATGTG
Classification: DNA BINDING PROTEIN
Source organism: Arabidopsis thaliana; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2025-03-09
Authors: Shohei, N., Masaru, T., Takuya, M.
PDB entry 9m74: Crystal structure of MBP-fused BIL1/BZR1 (21-104) in complex with double-stranded DNA contaning CACAGCTGTG
Classification: DNA BINDING PROTEIN
Source organism: Arabidopsis thaliana; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2025-03-09
Authors: Shohei, N., Masaru, T., Takuya, M.
PDB entry 9m76: UHRF1 bound to a mononucleosome in its pre-active state, with the RING domain bound to the SRA domain.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-03-09
Authors: Naschberger, A., Baradaran, R., Sayed, A., Fischle, W.
PDB entry 9m77: The activated state of human UHRF1 bound to a mononucleosome, with the finger loop ordered and linker 4 disordered.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-03-09
Authors: Naschberger, A., Baradaran, R., Sayed, A., Fischle, W.
PDB entry 9m78: Consensus map of UCC118 Rool RNA at 2.26-angstrom resolution
Classification: RNA
Source organism: Ligilactobacillus salivarius UCC118
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2025-03-10
Authors: Zhang, S., Yi, R., An, L., Li, S., Zhang, K.
PDB entry 9m79: Focused asymmetric unit of UCC118 Rool RNA at 1.96-angstrom resolution
Classification: RNA
Source organism: Ligilactobacillus salivarius UCC118
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.96 Å
Deposited: 2025-03-10
Authors: Zhang, S., Yi, R., An, L., Li, S., Zhang, K.
PDB entry 9m7a: Crystal structure of Serine Acetyltransferase (SAT) from Planctomyces limnophilus in complex with its inhibitor (Cysteine)
Classification: TRANSFERASE
Source organism: Planctopirus limnophila DSM 3776
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-03-10
Authors: Kumar, N., Kumaran, S.
PDB entry 9m7b: Structure of flagellar hook at 3.14 angstroms resolution,conformation 2.
Classification: PROTEIN FIBRIL
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-03-10
Authors: Chen, L.X., Jiang, W.X., Cheng, X.Q., Dong, X., Xing, Q.
PDB entry 9m7c: Cryo-EM structure of bacteriophage NF5 tail tube
Classification: VIRAL PROTEIN
Source organism: Brochothrix phage NF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-03-10
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9m7d: Crystal structure of AsDMS D333N mutant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aquimarina spongiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-03-10
Authors: Fujiyama, K., Vo, N.N.Q., Takahashi, S.
PDB entry 9m7e: Crystal structure of AsDMS D333N mutant in complex with drimenyl phosphate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aquimarina spongiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.90004 Å
Deposited: 2025-03-10
Authors: Fujiyama, K., Vo, N.N.Q., Takahashi, S.
PDB entry 9m7f: Crystal structure of AsDMS D333N mutant in complex with farnesyl pyrophosphate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aquimarina spongiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.60003 Å
Deposited: 2025-03-10
Authors: Fujiyama, K., Vo, N.N.Q., Takahashi, S.
PDB entry 9m7i: Crystal structure of FtmoX1 complexes with tetrahydroisoquinoline
Classification: OXIDOREDUCTASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-10
Authors: Liang, H.R.
PDB entry 9m7k: Heptamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2025-03-10
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9m7l: Crystal structure of Pseudouridine 5'-monophosphate phosphatase from human (hHDHD1A) in the unliganded state
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2025-03-10
Authors: Seo, S., Rhee, S.
PDB entry 9m7m: Crystal structure of human pseudouridine 5'-monophosphate phosphatase (hHDHD1A) complexed with pseudouridine
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2025-03-10
Authors: Seo, S., Rhee, S.
PDB entry 9m7n: Cryo-EM structure of bacteriophage NF5 tail-associated lysin
Classification: VIRAL PROTEIN
Source organism: Brochothrix phage NF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-03-10
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9m7o: Cryo-EM structure of Ufd2/Ubc4-ub complex with K29triUb(monomeric conformation)
Classification: LIGASE
Source organism: Homo sapiens; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2025-03-10
Authors: Tong, Z.B., Liu, L.
PDB entry 9m7q: Structure of flagellar hook at 3.18 angstroms resolution,conformation 1.
Classification: PROTEIN FIBRIL
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-03-11
Authors: Chen, L.X., Jiang, W.X., Cheng, X.Q., Dong, X., Xing, Q.
PDB entry 9m7r: At S3 trimer
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2025-03-11
Authors: Zhang, S.S.
PDB entry 9m7s: At S1+2S3 trimer
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-03-11
Authors: Zhang, S.S.
PDB entry 9m7t: AcrIE10-DNA complex in Klebsiella pneumoniae
Classification: DNA BINDING PROTEIN
Source organism: Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2025-03-11
Authors: Tsui, W.T., Ma, J.B.
PDB entry 9m7u: At S1+tRNA trimer
Classification: MEMBRANE PROTEIN/RNA
Source organism: Arabidopsis thaliana; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-03-11
Authors: Zhang, S.S.
PDB entry 9m7v: Cryo-EM structure of enterovirus A71 mature virion in complex with Fab CT11F9
Classification: VIRUS
Source organism: Enterovirus A71; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-03-11
Authors: Jiang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 9m7w: At 2S1+S3-tRNA trimer
Classification: MEMBRANE PROTEIN/RNA
Source organism: Arabidopsis thaliana; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-03-11
Authors: Zhang, S.S.
PDB entry 9m7x: Cryo-EM structure of bacteriophage NF5 C1 RBP
Classification: VIRAL PROTEIN
Source organism: Brochothrix phage NF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2025-03-11
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9m7y: Cryo-EM structure of gp79-dependent RNAP promoter open complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli; Escherichia phage phiEco32; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-11
Authors: Xu, L., Feng, Y.
PDB entry 9m7z: Cryo-EM structure of gp79 bound RNAP core enzyme
Classification: TRANSCRIPTION
Source organism: Escherichia coli; Escherichia phage phiEco32
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2025-03-11
Authors: Xu, L., Feng, Y.
PDB entry 9m80: cryo-EM structure of maltose and glucose bound rice PHS1(R709A)-DPE1(D391A) complex
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-03-11
Authors: Liu, J., Yan, J.
PDB entry 9m82: Crystal Structure of Human IDH1 in Complex with Kinsenoside
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2025-03-11
Authors: Ouyang, S., Zhao, Y.
PDB entry 9m84: Cryo-EM structure of Streptomyces coelicolor sigma factor shbA transcription initiation complex with shbA promoter
Classification: DNA BINDING PROTEIN
Source organism: Streptomyces coelicolor A3(2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2025-03-11
Authors: Liu, G., Zheng, J.
PDB entry 9m85: Crystal Structure of R121K Mutant HisB from Mycobacterium tuberculosis
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-03-11
Authors: Singla, M., Goyal, S., Kumar, V., Kumar, V., Kar, D., Aneja, S., Pal, R.K., Biswal, B.k.
PDB entry 9m86: Crystal structure of SpMETTL16 kinase associated 1 domain in complex with U6 snRNA internal stem loop
Classification: TRANSFERASE/RNA
Source organism: Schizosaccharomyces pombe; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.795 Å
Deposited: 2025-03-11
Authors: Ju, J., Tomita, K.
PDB entry 9m87: Mo1033, Conopressin from Conus monile
Classification: TOXIN
Source organism: Conus monile
Experimental method: SOLUTION NMR
Deposited: 2025-03-11
Authors: Dhurjad, P., Sonti, R.
PDB entry 9m88: PGS fused GPR3 dimer with antagonist AF64394
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Pyrococcus abyssi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-11
Authors: Geng, C., Jun, X.
PDB entry 9m8h: Crystal structure of wild-type PETase
Classification: HYDROLASE
Source organism: Piscinibacter sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-03-11
Authors: Chek, M.F., Yoshida, S., Hakoshima, T.
PDB entry 9m8i: Crystal structure of BHEF-bound PETase (S160A)
Classification: HYDROLASE
Source organism: Piscinibacter sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2025-03-12
Authors: Chek, M.F., Yoshida, S., Hakoshima, T.
PDB entry 9m8k: cryo-EM structure of human TAS2R4 with oligopeptide
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-12
Authors: Tan, M., Wu, J.
PDB entry 9m8l: cryo-EM structure of human TAS2R4
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-12
Authors: Tan, M., Wu, J.
PDB entry 9m8m: Structure of photosynthetic LH1-RC complex the Halophilic Nonsulfur Purple Bacterium, Rhodothalassium salexigens
Classification: PHOTOSYNTHESIS
Source organism: Rhodothalassium salexigens DSM 2132
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-03-12
Authors: Tani, K., Kanno, R., Inami, M., Ooya, T., Matsushita, R., Minamino, A., Takenaka, S., Takaichi, S., Purba, E.R., Hall, M., Mochizuki, T., Yu, L.-J., Mizoguchi, A., Humbel, B.M., Madigan, M.T., Kimura, Y., Wang-Otomo, Z.-Y.
PDB entry 9m8n: Cryo-EM structure of the human TRPA1 ion channel in complex with crotalphine.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2025-03-12
Authors: Kang, M.M., Zhang, Y.M., Ding, X.F., Wang, L.J., Sun, W.Y., Jiang, H., Chen, D., Xu, J.F., Pang, X.Y.
PDB entry 9m8o: Cryo-EM structure of bacteriophage NF5 baseplate
Classification: VIRAL PROTEIN
Source organism: Brochothrix phage NF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2025-03-12
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9m8p: GPR3 dimer with antagonist AF64394
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2025-03-12
Authors: Geng, C., Jun, X.
PDB entry 9m8q: CasRx-crRNA-target RNA ternary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ruminococcus sp. XPD3002
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-03-12
Authors: Chen, X.Y., Huang, H.D.
PDB entry 9m8s: Cryo-EM structure of the human TRPA1 ion channel in ligand-free state.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-12
Authors: Kang, M.M., Zhang, Y.M., Ding, X.F., Wang, L.J., Sun, W.Y., Jiang, H., Chen, D., Xu, J.F., Pang, X.Y.
PDB entry 9m8t: Crystal structure of the ribokinase RBK1 in complex with ADP from Saccharomyces cerevisiae
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2025-03-12
Authors: Yang, X.Y., Liu, X.H.
PDB entry 9m8u: Cryo-EM structure of human SIDT1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2025-03-12
Authors: Liao, L., Sun, L.
PDB entry 9m8v: dimer-GPR3-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-03-13
Authors: Geng, C., Jun, X.
PDB entry 9m8w: NMR structure of ProteinMPNN-desighed ubiquitin variant R4 at pH 3 with 8 M urea
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: SOLUTION NMR
Deposited: 2025-03-13
Authors: Wu, K.-P., Chen, L.-Y., Chuang, W.-C.
PDB entry 9m8x: NMR structure of ProteinMPNN-desighed ubiquitin variant R4 at pH 6.3 with 8 M urea
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: SOLUTION NMR
Deposited: 2025-03-13
Authors: Wu, K.-P., Chen, L.-Y., Chuang, W.-C.
PDB entry 9m8y: Cryo-EM structure of human OAT1 in complex with cefazolin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-03-13
Authors: Zhang, W., Zhang, Y.
PDB entry 9m8z: The complex structure of Plpro and Frag7
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m90: The complex structure of Plpro and Frag13
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m91: The complex structure of Plpro and Frag29
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m92: The complex structure of Plpro and Frag33
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m93: The complex structure of Plpro and Frag44
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m94: The complex structure of Plpro and Frag102
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m95: The complex structure of Plpro and Frag124
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m96: The complex structure of Plpro and Frag164
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m97: The complex structure of Plpro and Frag170
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m98: Structural Basis of Pausing During Transcription Initiation in Mycobacterium tuberculosis
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2025-03-13
Authors: Zheng, L.T.
PDB entry 9m99: The complex structure of Plpro and Frag200
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m9a: The complex structure of Plpro and Frag209
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m9b: The complex structure of Plpro and Frag299
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m9c: The complex structure of Plpro and Frag368
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m9d: Structural Basis of Pausing During Transcription Initiation in Mycobacterium tuberculosis
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-03-13
Authors: Zheng, L.T.
PDB entry 9m9e: Structural Basis of Pausing During Transcription Initiation in Mycobacterium tuberculosis
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-03-13
Authors: Zheng, L.T.
PDB entry 9m9f: Structure of flagellar hook at 3.50 angstroms resolution,conformation 3.
Classification: PROTEIN FIBRIL
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-03-13
Authors: Chen, L.X., Jiang, W.X., Cheng, X.Q., Dong, X., Xing, Q.
PDB entry 9m9g: NMR structure of ProteinMPNN-designed ubiquitin variant R10
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: SOLUTION NMR
Deposited: 2025-03-13
Authors: Wu, K.-P., Chen, L.-Y., Chuang, W.-C.
PDB entry 9m9h: NMR structure of ProteinMPNN-designed ubiquitin variant R4
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: SOLUTION NMR
Deposited: 2025-03-13
Authors: Wu, K.-P., Chen, L.-Y., Chuang, W.-C.
PDB entry 9m9j: The complex structure of Plpro and Frag443
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m9k: The complex structure of Plpro and Frag464
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m9l: The complex structure of Plpro and Frag712
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-03-13
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9m9m: Structure of human THIK1-apo
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2025-03-13
Authors: Dai, Z., Yin, Y.X.
PDB entry 9m9n: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) Mutant del23.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-13
Authors: Shin, S.C., Seo, J.J., Yoon, J.M.
PDB entry 9m9p: Glycogen phosphorylase dimer from E. coli
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-03-13
Authors: Takai, M., Fukuda, Y., Inoue, T.
PDB entry 9m9q: The structure of THIK1 complexed with halothane
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-03-13
Authors: Dai, Z., Yin, Y.X.
PDB entry 9m9r: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) Mutant del23 in Complex with Nirmatrelvir
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-03-13
Authors: Shin, S.C., Seo, J.J., Yoon, J.M.
PDB entry 9m9v: Cryo-EM structure of human OAT1 in complex with adefovir
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-03-13
Authors: Zhang, W., Zhang, Y.
PDB entry 9m9w: The structure of THIK1-R92S
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-03-13
Authors: Dai, Z., Yin, Y.X.
PDB entry 9m9x: The structure of THIK1 complexed with AA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-03-13
Authors: Dai, Z., Yin, Y.X.
PDB entry 9m9y: Cryo-EM structure of human OAT4 in apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-03-13
Authors: Zhang, W., Zhang, Y.
PDB entry 9m9z: Crystal structure of MctB from Mycobacterium tuberculosis at 2.3 Angstroms resolution
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis CDC1551
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2025-03-13
Authors: Sun, D.M., Chen, L., Wu, M.H., Zang, J.Y., Tian, C.L.
PDB entry 9ma0: Cryo-EM structure of EBV gp350 D123 in complex with neutralizing antibody 4A11
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human herpesvirus 4 strain B95-8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2025-03-13
Authors: Ma, H.Y., Sun, C.
PDB entry 9ma1: Crystal structure of MctB from Mycobacterium tuberculosis at 3.25 Angstroms resolution
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis CDC1551
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2025-03-13
Authors: Sun, D.M., Chen, L., Wu, M.H., Zang, J.Y., Tian, C.L.
PDB entry 9ma3: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) Mutant del23T45I in Complex with Nirmatrelvir (C2 space group)
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-03-14
Authors: Shin, S.C., Seo, J.J., Yoon, J.M.
PDB entry 9ma4: Crystal structure of MTAP from Aeropyrum pernix complex with MTA at 343K, Soaked in potassium phosphate pH7.0 with MTA
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2025-03-14
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9ma5: CryoEM structure of a transmembrane protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-03-14
Authors: Ning, Y., Ge, J., Yu, J.
PDB entry 9ma6: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) Mutant del23T45I in Complex with Nirmatrelvir (P21 space group)
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2025-03-14
Authors: Shin, S.C., Seo, J.J., Yoon, J.M.
PDB entry 9ma7: Cryo-EM structure of EBV gp350 D123 in complex with neutralizing antibody 1A12 and 1H5 and non-neutralizing antibody 2E9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; human gammaherpesvirus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-03-14
Authors: Ma, H.Y., Sun, C.
PDB entry 9ma8: Glycogen phosphorylase from Segatella copri bound to glycogen-chain A and E
Classification: STRUCTURAL PROTEIN
Source organism: Segatella copri
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2025-03-14
Authors: Shobu, K., Fukuda, Y., Inoue, T.
PDB entry 9ma9: The complex structure of Plpro and Frag762
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-03-14
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9maa: The complex structure of Plpro and Frag794
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-03-14
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9mab: The complex structure of Plpro and Frag747
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2025-03-14
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9mac: The complex structure of Plpro and Frag746
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-03-14
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9mad: Crystal structure of MTAP from Aeropyrum pernix complex with MTA at 323K, Soaked in potassium phosphate pH7.0 with MTA
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-03-14
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9mae: CryoEM structure of a transmembrane protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-03-14
Authors: Ning, Y., Ge, J., Yu, J.
PDB entry 9maf: The crystal structure of Plpro and Frag 550
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-03-14
Authors: Xiao, Q.J., Wu, T.T., Zhuo, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9mag: CryoEM structure of a transmembrane protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-03-14
Authors: Ning, Y., Ge, J., Yu, J.
PDB entry 9mah: PPARG-Spermine analogs
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-14
Authors: Lu, L.
PDB entry 9mai: CryoEM structure of a transmembrane protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2025-03-14
Authors: Ning, Y., Ge, J., Yu, J.
PDB entry 9maj: The complex structure of Plpro and Frag642
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-03-14
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9mal: The complex structure of Plpro and Frag642
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-03-14
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9mam: The complex structure of Plpro and Frag676
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-03-14
Authors: Xiao, Q.J., Wu, T.T., Zhou, Z.H., Li, X.Y., Qin, W.M.
PDB entry 9man: Structure of Norrin in complex with human Tspan12 large extracellular loop (Tspan12 LEL)
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli O157:H7; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2025-03-14
Authors: Xue, L., Wang, Z., Xu, W.
PDB entry 9map: Crystal structure of GAGWLP and PD-L1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-03-14
Authors: Yang, P., Chen, M.R., Xiao, Y.B.
PDB entry 9maq: Glycogen phosphorylase from D. longicatena
Classification: STRUCTURAL PROTEIN
Source organism: Dorea longicatena DSM 13814
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2025-03-14
Authors: Takai, M., Fukuda, Y., Inoue, T.
PDB entry 9mar: Serine Beta Lactamase OXA-48 in Complex with Dual MBL/SBL Inhibitor 19
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.374 Å
Deposited: 2025-03-14
Authors: Li, G.-B., Yang, Z.-B., Wei, S.-Q.
PDB entry 9mas: Metal Beta Lactamase VIM-2 in Complex with Dual MBL/SBL Inhibitor 3
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.757 Å
Deposited: 2025-03-14
Authors: Li, G.-B., Yang, Z.-B., Wei, S.-Q.
PDB entry 9mat: TopBP1 BRCT 7-8 Domain
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-03-14
Authors: Chen, W., Wang, L., Ruan, K.
PDB entry 9mau: Cryo-EM structure of human OAT1 in the apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-03-14
Authors: Zhang, W., Zhang, Y.
PDB entry 9mav: Cryo-EM structure of Dengue virus serotype2 US/BID-V594/2006 strain bound with J9 fab.
Classification: VIRUS
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2025-03-14
Authors: Roy, A., Prasad, V.M.
PDB entry 9maw: Crystal structure of TOPBP1BRCT7-8 domain in complex with 1-Adamantaneacetic acid
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-03-14
Authors: Chen, W., Wang, L., Ruan, K.
PDB entry 9maz: Helical Reconstruction of DENV2 US/BID-V594/2006 tubular particles bound with J9 fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 38.5 Å
Deposited: 2025-03-14
Authors: Roy, A., Prasad, V.M.
PDB entry 9mb0: Cryo-EM structure of Dengue virus serotype2 THSTI/TRC/01 strain bound with J9 fab
Classification: VIRUS
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.21 Å
Deposited: 2025-03-14
Authors: Roy, A., Prasad, V.M.
PDB entry 9mb1: Helical Reconstruction of DENV2 THSTI/TRC/01 tubular particles bound with J9 fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 14.41 Å
Deposited: 2025-03-14
Authors: Roy, A., Prasad, V.M.
PDB entry 9mb3: Crystal structure of YTHDC1 in complex with YL-5092
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-15
Authors: Zhang, H., Yang, S.
PDB entry 9mb4: Metal Beta Lactamase NDM-1 in Complex with Dual MBL/SBL Inhibitor 14
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.441 Å
Deposited: 2025-03-15
Authors: Li, G.-B., Yang, Z.-B., Wei, S.-Q.
PDB entry 9mb5: Structure of HN HA at pH 7.0 (conformation1).
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-03-15
Authors: Sun, H.L., Peng, Q., Deng, G.J.
PDB entry 9mb6: Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-03-15
Authors: Omura, S.N., Nakagawa, R., Yamashita, K., Nishimasu, H., Nureki, O.
PDB entry 9mb7: Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-03-15
Authors: Omura, S.N., Nakagawa, R., Yamashita, K., Nishimasu, H., Nureki, O.
PDB entry 9mb8: the complex of D14 and RGSV P3
Classification: PLANT PROTEIN
Source organism: Oryza sativa Japonica Group; Tenuivirus oryzabrevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2025-03-15
Authors: Huang, Y.C.
PDB entry 9mb9: Cryo-EM structure of Gi-bound GPCR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-03-15
Authors: Zhao, J., Zhao, C., Sun, H., Shao, Z.H.
PDB entry 9mba: Cryo-EM structure of complex of transducer-bound GPCR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-03-15
Authors: Zhao, J., Zhao, C., Sun, H., Shao, Z.H.
PDB entry 9mbb: Cryo-EM structure of antagonist-bound GPCR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-03-15
Authors: Zhao, J., Zhao, C., Sun, H., Shao, Z.H.
PDB entry 9mbc: Cryo-EM structure of agonist-bound GPCR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-03-15
Authors: Zhao, J., Zhao, C., Sun, H., Shao, Z.H.
PDB entry 9mbd: Cryo-EM structure of Apo-GPCR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-03-15
Authors: Zhao, J., Zhao, C., Sun, H., Shao, Z.H.
PDB entry 9mbe: Neutron crystal structure of human MTH1(G2K/C87A/C104S mutant) in complex with 8-oxo-dGTP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-03-17
Authors: Fujimiya, K., Hirata, K., Ostermann, A., Schrader, T.E., Hiromoto, T., Arimori, T., Hirano, Y., Tamada, T., Nakamura, T.
PDB entry 9mbf: Neutron crystal structure of human MTH1(G2K/C87A/C104S mutant) in complex with 2-oxo-dATP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-03-17
Authors: Fujimiya, K., Hirano, Y., Kusaka, K., Tamada, T., Nakamura, T.
PDB entry 9mbg: 8-Oxo-dGTP hydrolysis in human MTH1(G2K mutant) crystal using Mn2+: the ES complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-03-17
Authors: Hirata, K., Nakamura, T.
PDB entry 9mbh: 8-Oxo-dGTP hydrolysis in human MTH1(G2K mutant) crystal using Mn2+: the ES-3M complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2025-03-17
Authors: Hirata, K., Nakamura, T.
PDB entry 9mbi: 8-Oxo-dGTP hydrolysis in human MTH1(G2K mutant) crystal using Mn2+: the ES/EP-3M complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.09 Å
Deposited: 2025-03-17
Authors: Hirata, K., Nakamura, T.
PDB entry 9mbj: 8-Oxo-dGTP hydrolysis in human MTH1(G2K mutant) crystal using Mn2+: the EP-M complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-03-17
Authors: Hirata, K., Nakamura, T.
PDB entry 9mbk: 2-Oxo-dATP hydrolysis in human MTH1(G2K mutant) crystal using Mn2+: the ES complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2025-03-17
Authors: Hirata, K., Nakamura, T.
PDB entry 9mbl: 2-Oxo-dATP hydrolysis in human MTH1(G2K mutant) crystal using Mn2+: the ES-2M complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-03-17
Authors: Hirata, K., Nakamura, T.
PDB entry 9mbm: 2-Oxo-dATP hydrolysis in human MTH1(G2K mutant) crystal using Mn2+: the ES/EP-3M complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-03-17
Authors: Hirata, K., Nakamura, T.
PDB entry 9mbn: 2-Oxo-dATP hydrolysis in human MTH1(G2K mutant) crystal using Mn2+: the EP-M complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-03-17
Authors: Hirata, K., Nakamura, T.
PDB entry 9mbo: Focused refinement of RPN1 and the C-terminal helix of midnolin in the substrate-engaged human 26S proteasome
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-03-17
Authors: Zhu, C., Qin, L., Liang, L.
PDB entry 9mbp: Substrate-engaged human 26S proteasome bound to midnolin with RPT1 at top of spiral staircase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-03-17
Authors: Zhu, C., Qin, L., Liang, L.
PDB entry 9mbq: Substrate-engaged human 26S proteasome bound to midnolin with RPT5 at top of spiral staircase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-03-17
Authors: Zhu, C., Qin, L., Liang, L.
PDB entry 9mbv: Crystal structure of SARS main protease complex with CCF0058981
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-03-17
Authors: Zeng, P., Li, J.
PDB entry 9mbw: double-stranded DNA with an diacridine-derives
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-03-17
Authors: Lee, H.C., Hou, M.H.
PDB entry 9mbx: Cryo-EM structure of alpha-hemolysin heptameric pre-pore state III in the presence of RBC
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-03-17
Authors: Chatterjee, A., Roy, A., Dutta, S.
PDB entry 9mc0: The co-crystal structure of DYRK2 with AF-4
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2025-03-17
Authors: Shen, H.T., Xiao, Y.B.
PDB entry 9mc1: Trans-acting enoylreductase PhiaB involved in the phialotideA biosynthesis pathway
Classification: OXIDOREDUCTASE
Source organism: Pseudophialophora
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-03-17
Authors: Takekawa, Y., Takino, J., Sato, S., Yabuno, N., Oikawa, H., Ose, T., Minami, A.
PDB entry 9mc2: Cryo-EM structure of dopaminated Tau fibril
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2025-03-17
Authors: Liu, Z., Li, X., Liu, C.
PDB entry 9mc4: Cryo-EM structure of Human UBA1-UBE2O-Ub -Transthiolation state 4
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-03-17
Authors: Chen, P.-T., Wu, K.-P.
PDB entry 9mc5: Cryo-EM structure of Human UBA1-UBE2O-Ub -Transthiolation state 3
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-03-17
Authors: Chen, P.-T., Wu, K.-P.
PDB entry 9mc6: Cryo-EM structure of Human UBA1-UBE2O-Ub -Transthiolation state 2
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-03-17
Authors: Chen, P.-T., Wu, K.-P.
PDB entry 9mc7: Cryo-EM structure of Human UBA1-UBE2O-Ub -Recruitment state 4
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-03-17
Authors: Chen, P.-T., Wu, K.-P.
PDB entry 9mc8: Cryo-EM structure of human OAT1 in complex with PAH
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-03-17
Authors: Zhang, W., Zhang, Y.
PDB entry 9mc9: Cryo-EM structure of Human UBA1-UBE2O-Ub -Transthiolation state 1
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-03-17
Authors: Chen, P.-T., Wu, K.-P.
PDB entry 9mcb: Cryo-EM structure of Human UBA1-UBE2O-Ub -Recruitment state 1
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2025-03-17
Authors: Chen, P.-T., Wu, K.-P.
PDB entry 9mcc: Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a (rVCP) from Trachydiscus minutus at 2.4 angstrom
Classification: PHOTOSYNTHESIS
Source organism: Trachydiscus minutus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2025-03-17
Authors: Seki, S., Litvin, R., Bina, D., Tanaka, H., Miyata, T., Namba, K., Kurisu, G., Polivka, T., Fujii, R.
PDB entry 9mcd: Crystal structure of homodimeric Alba from Oryza sativa
Classification: GENE REGULATION
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-03-17
Authors: Das, A., Raghav, S., Jain, D.
PDB entry 9mci: Crystal structure of SARS-Cov-2 main protease G15S mutant in complex with Leritrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-03-17
Authors: Li, W.W., Li, J.
PDB entry 9mcj: Crystal structure of SARS-Cov-2 main protease G15S mutant in complex with Leritrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-03-17
Authors: Li, W.W., Li, J.
PDB entry 9mcl: Crystal structure of SARS-Cov-2 main protease K90R mutant in complex with Leritrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-17
Authors: Li, W.W., Li, J.
PDB entry 9mco: Crystal structure of SARS-Cov-2 main protease E166N mutant in complex with Leritrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-03-17
Authors: Li, W.W., Li, J.
PDB entry 9mcr: Plant chloroplast dicarboxylate transporter AtDiT1
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2025-03-17
Authors: Yang, Z., Zhang, P.
PDB entry 9mcs: Plant chloroplast dicarboxylate transporter AtDiT1 bound with OAA
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2025-03-17
Authors: Yang, Z., Zhang, P.
PDB entry 9mct: Plant chloroplast dicarboxylate transporter AtDiT1 bound with 2-OG
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-03-17
Authors: Yang, Z., Zhang, P.
PDB entry 9mcu: Plant chloroplast dicarboxylate transporter AtDiT2.1
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-03-17
Authors: Yang, Z., Zhang, P.