LiteFold/PDB huggingface dataset:
PDB entry 9lpa: The cryo-EM structure of retron Eco8 in an active state
Classification: ANTITOXIN/DNA/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-01-24
Authors: Yuan, L., Feng, Y.
PDB entry 9lpb: Terpene cyclase AriE mutant-D128A
Classification: METAL BINDING PROTEIN
Source organism: Amycolatopsis arida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-01-24
Authors: Li, F.R., Yang, Q., He, J.Y., Sun, X.R., Pan, X.M., Xu, H.M., Rudolf, J.D., Dong, L.B.
PDB entry 9lpc: Crystal structure of Escherichia coli trptophanyl-tRNA synthetase in complex with tRNA(Trp)
Classification: LIGASE/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2025-01-24
Authors: Peng, X., Chen, B., Zhou, H.
PDB entry 9lpd: Crystal structure of Escherichia coli trptophanyl-tRNA synthetase in complex with tirabrutinib
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-01-24
Authors: Peng, X., Chen, B., Xia, K., Zhou, H.
PDB entry 9lpe: ATPDF2 HDZIP domain complexed with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2025-01-24
Authors: Chen, W., Huang, H.D.
PDB entry 9lpg: Crystal structure of maize CRY-GL2 photosignaling complex
Classification: PLANT PROTEIN
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-01-24
Authors: Liu, Y., Zhang, P.
PDB entry 9lph: Neutron structure of GH1 beta-glucosidase Td2F2 ligand-free form at room temperature
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-01-24
Authors: Yano, N., Fushinobu, S.
PDB entry 9lpi: Neutron structure of GH1 beta-glucosidase Td2F2 glucose complex at room temperature
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-01-24
Authors: Yano, N., Arakawa, H., Lin, C.C., Ishiwata, A., Tanaka, K., Kusaka, K., Fushinobu, S.
PDB entry 9lpk: Structure of human PADI6-UHRF1-UBE2D3 complex
Classification: LIGASE/HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-01-25
Authors: Li, J., Deng, D.
PDB entry 9lpl: E. coli FabF mutant -C163Q
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-01-25
Authors: Chen, L., Huang, Y.
PDB entry 9lpr: STRUCTURAL BASIS FOR BROAD SPECIFICITY IN ALPHA-LYTIC PROTEASE MUTANTS
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Lysobacter enzymogenes; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1991-08-05
Authors: Bone, R., Agard, D.A.
PDB entry 9lpt: Structure of the P113 protein from Plasmodium falciparum
Classification: CELL INVASION
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-25
Authors: Dan, T., Zhudi, Y.
PDB entry 9lpu: Crystal structure of tKeima at pH 4.0
Classification: FLUORESCENT PROTEIN
Source organism: Montipora sp. 20
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-01-26
Authors: Nam, K.H.
PDB entry 9lpv: Neutron structure of GH1 beta-glucosidase Td2F2 2F-Glc complex at room temperature
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-01-26
Authors: Yano, N., Arakawa, H., Lin, C.C., Ishiwata, A., Tanaka, K., Kusaka, K., Fushinobu, S.
PDB entry 9lpw: Cryo-EM structure of rice PHS1-DPE1 complex
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-01-26
Authors: Jian, L., Junjie, Y.
PDB entry 9lpx: X-ray structure of GH1 beta-glucosidase Td2F2 2F-Glc complex at room temperature
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-01-26
Authors: Yano, N., Arakawa, H., Lin, C.C., Ishiwata, A., Tanaka, K., Kusaka, K., Fushinobu, S.
PDB entry 9lpy: X-ray structure of GH1 beta-glucosidase Td2F2 2F-Glc complex at cryogenic temperature
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2025-01-26
Authors: Yano, N., Arakawa, H., Lin, C.C., Ishiwata, A., Tanaka, K., Kusaka, K., Fushinobu, S.
PDB entry 9lpz: Cryo-EM structure of rice PHS1-DPE1 complex
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-01-26
Authors: Liu, J., Yan, J.
PDB entry 9lq0: Crystal structure of choline dehydrogenase BetA from Pseudomonas denitrificans
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp. ATCC 13867
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-01-27
Authors: Xiao, Z., Wang, M.
PDB entry 9lq1: Structure of human DNMT3A-TCL1A complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-01-27
Authors: Liu, Q.T., Li, J.H.
PDB entry 9lq2: Structure of human dimeric NLRP7-TCL1A complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2025-01-27
Authors: Liu, Q.T., Li, J.H.
PDB entry 9lq3: Crystal structure of Linafexor-FXR complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-01-27
Authors: Yao, B., Li, Y.
PDB entry 9lq4: Structure of the human monomeric NLRP7-TCL1A complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2025-01-27
Authors: Liu, Q.T., Li, J.H.
PDB entry 9lq5: Cryo-EM structure of Apo type III-B CRISPR-Cas effector complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Bacteroides fragilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-01-27
Authors: Jin, X., Chen, Z., Zhao, B.
PDB entry 9lq6: Cryo-EM structure of adTR-bound type III-B CRISPR-Cas effector complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Bacteroides fragilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-01-27
Authors: Jin, X., Duan, B., Chen, Z., Zhao, B.
PDB entry 9lq7: Cryo-EM structure of NTR-bound type III-B CRISPR-Cas effector complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Bacteroides fragilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-01-28
Authors: Jin, X., Duan, B., Chen, Z., Zhao, B.
PDB entry 9lq8: Cryo-EM structure of CTR-bound type III-B CRISPR-Cas effector complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Bacteroides fragilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-01-28
Authors: Jin, X., Duan, B., Chen, Z., Zhao, B.
PDB entry 9lq9: Crysral structure of NrN
Classification: IMMUNE SYSTEM
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqa: Crystal structure of NrN E21A in complex with SAM-AMP
Classification: IMMUNE SYSTEM
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqb: Crystal structure of NrN E21A in complex with SAH-AMP
Classification: IMMUNE SYSTEM
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqc: Crystal structure of NrN D119A in complex with SAH-AMP
Classification: IMMUNE SYSTEM
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqd: Crystal structure of SAM lyase
Classification: IMMUNE SYSTEM
Source organism: Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqe: Crystal structure of SAM lyase in complex with SAH
Classification: IMMUNE SYSTEM
Source organism: Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqf: Crystal structure of SAM lyase in complex with SAH-AMP
Classification: IMMUNE SYSTEM
Source organism: Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqg: Crystal structure of SAM lyase in complex with MTA-AMP
Classification: IMMUNE SYSTEM
Source organism: Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqh: Crystal structure of SAM lyase in complex with sinefungin-AMP
Classification: IMMUNE SYSTEM
Source organism: Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-01-28
Authors: Duan, B., Zhao, B.
PDB entry 9lqj: Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica bound to C-terminal region of collagen model peptide (Pro-Hyp-Gly)10
Classification: METAL BINDING PROTEIN
Source organism: Hathewaya histolytica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-01-28
Authors: Oki, H., Kawahara, K.
PDB entry 9lqk: Crystal structure of synthetic ubiquitin variant R10 designed by ProteinMPNN
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-01-28
Authors: Lu, W.-L., Ko, T.-P., Wu, K.-P.
PDB entry 9lql: Structure of STG-hydrolyzing beta-glucosidase 1 (PSTG1) complexed with heptyl 1-thio-beta-D-glucopyranoside
Classification: HYDROLASE
Source organism: Paenibacillus relictisesami
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2025-01-28
Authors: Yanai, T., Arai, A., Takahashi, Y., Imaizumi, R., Takeshita, K., Matsuura, H., Sakai, N., Takahashi, S., Yamamoto, M., Kataoka, K., Nakayama, T., Yamashita, S.
PDB entry 9lqm: Crystal structure of synthetic ubiquitin variant R4 designed by ProteinMPNN
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-01-28
Authors: Lu, W.-L., Ko, T.-P., Wu, K.-P.
PDB entry 9lqt: Cryo-EM structure of the Apo-state APLNR homodimer
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lqu: Cryo-EM structure of the JN241-9-bound state 1a of APLNR homodimer
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lqw: Cryo-EM structure of the JN241-9-bound state 1b of APLNR homodimer
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lqx: Cryo-EM structure of the JN241-9-bound state 1c of APLNR homodimer
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lqy: Cryo-EM structure of the AMG986-bound state 2a of APLNR homodimer
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lqz: Cryo-EM structure of the AMG986-bound state 2b of APLNR homodimer
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lr1: Cryo-EM structure of the JN241-9-bound APLNR monomer-Gi complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lr2: Cryo-EM structure of the JN241-9-bound APLNR dimer-Gi complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lr3: Cryo-EM structure of the AMG986-bound APLNR monomer-Gi complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-01-28
Authors: Ji, S., Wang, W., Yang, Y., Shen, Q., Zhang, Y.
PDB entry 9lr4: Crystal Structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix 343K
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-29
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9lr5: Crystal structure of Bacteroides thetaiotaomicron GH84 O-GlcNAcase D243N mutant
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 3.099 Å
Deposited: 2025-01-29
Authors: Ohnuma, T., Takeshita, D.
PDB entry 9lr6: Zn-Carbonic Anhydrase II complexed with 3NPA at RT
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-01-29
Authors: Kim, C.U., Kim, J.K.
PDB entry 9lr7: Crystal Structure of the Basal pilin EbpB from Enterococcus faecalis.
Classification: CELL ADHESION
Source organism: Enterococcus faecalis OG1RF
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-01-30
Authors: Sharma, V., Krishnan, V.
PDB entry 9lr9: Local reconstruction of bovine adenovirus type 3 capsid
Classification: VIRAL PROTEIN
Source organism: Bovine adenovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-01-30
Authors: Xiao, H., Liu, H.R.
PDB entry 9lra: Killer immunoglobulin receptor KIR2DL2 in complex with Pan2D Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-01-30
Authors: Nishikawa, Y.
PDB entry 9lrb: Cryo-EM structure of the histamine H1 receptor-Gs protein complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-01-30
Authors: Matsuzaki, Y., Sano, F.K., Oshima, H.S., Akasaka, H., Kobayashi, K., Tanaka, T., Itoh, Y., Shihoya, W., Kise, Y., Kusakizako, T., Nureki, O.
PDB entry 9lrc: Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Receptor focused)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-01-30
Authors: Matsuzaki, Y., Sano, F.K., Oshima, H.S., Akasaka, H., Kobayashi, K., Tanaka, T., Itoh, Y., Shihoya, W., Kise, Y., Kusakizako, T., Nureki, O.
PDB entry 9lrd: Cryo-EM structure of the histamine H1 receptor-Gi protein complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-01-30
Authors: Matsuzaki, Y., Sano, F.K., Oshima, H.S., Akasaka, H., Kobayashi, K., Tanaka, T., Itoh, Y., Shihoya, W., Kise, Y., Kusakizako, T., Nureki, O.
PDB entry 9lre: Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Overall)
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-01-30
Authors: Matsuzaki, Y., Sano, F.K., Oshima, H.S., Akasaka, H., Kobayashi, K., Tanaka, T., Itoh, Y., Shihoya, W., Kise, Y., Kusakizako, T., Nureki, O.
PDB entry 9lrf: Killer immunoglobulin receptor KIR2DL2 in complex with KIR2DL2_KIR2DL2/3 agonist 61-Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-01-31
Authors: Nishikawa, Y.
PDB entry 9lrg: Crystal Structure of Thermus thermophilus KhpB/EloR
Classification: RNA BINDING PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2025-01-31
Authors: Fukui, K., Murakawa, T., Yano, T.
PDB entry 9lrh: Killer immunoglobulin receptor KIR2DL2 in complex with KIR2DL2_KIR2DL2/3 agonist 61-scFv
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2025-01-31
Authors: Nishikawa, Y.
PDB entry 9lri: Crystal Structure of Thermus thermophilus KhpB/EloR complexed with RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: synthetic construct; Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-01-31
Authors: Fukui, K., Murakawa, T., Yano, T.
PDB entry 9lrj: Glucosyl transferase NbUGT72AY1 co-crystallized with Scopoletin and UDP2Fglucose in the presence of retinol
Classification: HYDROLASE
Source organism: Nicotiana benthamiana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2025-01-31
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 9lrk: Cryo-EM structure of apo collagenase H from Hathewaya histolytica
Classification: METAL BINDING PROTEIN
Source organism: Hathewaya histolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-01-31
Authors: Oki, H., Kawahara, K.
PDB entry 9lrm: Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)10
Classification: METAL BINDING PROTEIN
Source organism: Hathewaya histolytica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-01-31
Authors: Oki, H., Kawahara, K.
PDB entry 9lro: The crystal structure of PDE4D with T3700
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.20001 Å
Deposited: 2025-02-01
Authors: Huang, Y.-Y., Luo, H.-B.
PDB entry 9lrp: The crystal structure of PDE4D with 13c
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.10001 Å
Deposited: 2025-02-01
Authors: Huang, Y.-Y., Luo, H.-B.
PDB entry 9lrq: Indole monooxygenase from Acinetobacter baumannii
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-01
Authors: Suksomjaisaman, K., Sirikantaramas, S., Sucharitakul, J., Wangkanont, K.
PDB entry 9lrr: Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-G141A mutant from Vibrio cholerae with bound korormicin A
Classification: MEMBRANE PROTEIN
Source organism: Vibrio cholerae O395
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-02-01
Authors: Ishikawa-Fukuda, M., Kishikawa, J., Kato, T., Murai, M.
PDB entry 9lrs: The structure of MRGPRX4 with PSB-18061
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-02-01
Authors: Cao, C., Roth, B.L.
PDB entry 9lrv: Cryo-EM structure of Fission yeast centromeric nucleosome Class 1
Classification: NUCLEAR PROTEIN/DNA
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-02-01
Authors: Xiong, Y., Zang, J.
PDB entry 9lrw: Cryo-EM structure of Fission yeast centromeric nucleosome Class 2
Classification: NUCLEAR PROTEIN/DNA
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-02-01
Authors: Xiong, Y., Zang, J.
PDB entry 9lry: Straight and symmetrical filament of the spirochete periplasmic flagella of Leptospira biflexa
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-02-02
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9lrz: Core filament of the spirochete periplasmic flagella of Leptospira biflexa
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-02-02
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9ls0: Straight and symmetrical filament of the spirochete periplasmic flagella of Leptospira biflexa deleted fcpB strain
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-02-02
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9ls1: core filament of the spirochete periplasmic flagella of Leptospira biflexa deleted fcpB strain
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-02-02
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9ls3: S-ECD of SARS-CoV-2 Delta variant in complex with Fab854
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-02
Authors: Li, Y.N., Yan, R.H., Ju, B., Zhang, Z.
PDB entry 9ls5: Entamoeba histolytica Cyclophilin 18 (apo)
Classification: ISOMERASE
Source organism: Entamoeba histolytica HM-1:IMSS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-02-03
Authors: Gandhi, S., Vasudevan, D.
PDB entry 9ls6: Solution structure of holo Acyl carrier protein 1 (ApeE) of aryl polyene biosynthesis from Acinetobacter baumannii
Classification: BIOSYNTHETIC PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: SOLUTION NMR
Deposited: 2025-02-03
Authors: Yoo, S., Lee, C., Choi, S., Kim, Y.
PDB entry 9ls7: The crystal structure of human RyR3 Repeat12 domain complex with RI-2 and AMP-PCP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2025-02-04
Authors: Hadiatullah, H., Lin, L., Yuchi, Z.
PDB entry 9ls8: Crystal structure of peptidyl-tRNA hydrolase from Enterococcus faecium at 1.22 A
Classification: HYDROLASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2025-02-04
Authors: Pandey, R., Zohib, M., Arora, A.
PDB entry 9lsa: Crystal structure of mRFP1 with a grafted calcium-binding sequence and one bound calcium ion in a calcium-containing solution
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-02-04
Authors: Uehara, R., Kamiya, Y., Maeda, S., Okamoto, K., Toya, S., Chiba, R., Amesaka, H., Takano, K., Matsumura, H., Tanaka, S.-i.
PDB entry 9lsc: Crystal structure of mRFP1 with a grafted calcium-binding sequence and two bound calcium ions in a calcium-free solution
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2025-02-04
Authors: Uehara, R., Kamiya, Y., Maeda, S., Okamoto, K., Toya, S., Chiba, R., Amesaka, H., Takano, K., Matsumura, H., Tanaka, S.-i.
PDB entry 9lsd: Crystal structure of a polyketide cyclase FasU from Streptomyces kanamyceticus
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces kanamyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-02-04
Authors: Luo, S., Zhu, C.
PDB entry 9lsf: Crystal structure of mRFP1 with a grafted calcium-binding sequence and one bound calcium ion in a calcium-free solution
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-02-04
Authors: Uehara, R., Kamiya, Y., Maeda, S., Okamoto, K., Toya, S., Chiba, R., Amesaka, H., Takano, K., Matsumura, H., Tanaka, S.-i.
PDB entry 9lsh: Cryo-EM structure of the wild-type diabody complex (CitS-diabody #1-TLR3)
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Klebsiella pneumoniae; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-04
Authors: Kim, S., Kim, J.W., Park, J.G., Lee, S.S., Choi, S.H., Lee, J.-O., Jin, M.S.
PDB entry 9lsi: Cryo-EM structure of the S82C-S82C diabody complex (CitS-diabody #2-TLR3)
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Klebsiella pneumoniae; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-04
Authors: Kim, S., Kim, J.W., Park, J.G., Lee, S.S., Choi, S.H., Lee, J.-O., Jin, M.S.
PDB entry 9lsj: Cryo-EM structure of the G15C-R66C and T83C-T83C diabody complex (CitS-diabody #7-TLR3)
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Klebsiella pneumoniae; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-04
Authors: Kim, S., Kim, J.W., Park, J.G., Lee, S.S., Choi, S.H., Lee, J.-O., Jin, M.S.
PDB entry 9lsk: Cryo-EM structure of the Klebsiella pneumoniae CitS (citrate-bound occluded state)
Classification: MEMBRANE PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-04
Authors: Kim, S., Kim, J.W., Park, J.G., Lee, S.S., Choi, S.H., Lee, J.-O., Jin, M.S.
PDB entry 9lsl: The crystal structure of PDE5A with L1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-02-04
Authors: Wu, D., Huang, Y.-Y., Luo, H.-B.
PDB entry 9lsm: The crystal structure of PDE5A with L9
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-02-04
Authors: Wu, D., Huang, Y.-Y., Luo, H.-B.
PDB entry 9lsn: hAGO2-MID in complex with a chemical modified uridine monophosphate
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-02-04
Authors: Yao, Y.Q., Ma, J.B.
PDB entry 9lso: hAGO2-MID in complex with a chemical modified uridine monophosphate
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-02-04
Authors: Yao, Y.Q., Ma, J.B.
PDB entry 9lss: The crystal structure of PDE5 with 1934
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.50007 Å
Deposited: 2025-02-04
Authors: Wu, D., Huang, Y.-Y., Luo, H.-B.
PDB entry 9lsw: Crystal structure of the calcium-free mRFP1 with a grafted calcium-binding sequence
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2025-02-05
Authors: Uehara, R., Kamiya, Y., Maeda, S., Okamoto, K., Toya, S., Chiba, R., Amesaka, H., Takano, K., Matsumura, H., Tanaka, S.-i.
PDB entry 9lsy: Structure of the gdTCR-Fab complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-02-05
Authors: Bai, Y., Zhu, Y., Huang, Z.
PDB entry 9lsz: Inward-open Structure of human B0AT1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-02-05
Authors: Imazu, T., Miyaguchi, I., Hiraizumi, M.
PDB entry 9lt3: Integrin alpha-v beta-3 in complex with Trimucrin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Protobothrops mucrosquamatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-02-05
Authors: Wang, Y.T., Chuang, W.J.
PDB entry 9lt4: Cryo-EM structure of light harvesting complex 2 from Ery. sanguineus
Classification: PHOTOSYNTHESIS
Source organism: Erythrobacter sanguineus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-02-05
Authors: Yue, X.-Y., Wang, G.-L., Yu, L.-J.
PDB entry 9lt5: Crystal structure of dehydrogenase/isomerase FabX from Helicobacter pylori in complex with inhibitor 1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-05
Authors: Zhang, L., Zhang, L.
PDB entry 9lt6: Crystal structure of dehydrogenase/isomerase FabX from Helicobacter pylori in complex with inhibitor 21
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-05
Authors: Zhang, L., Zhang, L.
PDB entry 9lt7: Crystal structure of dehydrogenase/isomerase FabX from Helicobacter pylori in complex with inhibitor 11
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-06
Authors: zhang, L., Zhang, L.
PDB entry 9lt8: Crystal structure of dehydrogenase/isomerase FabX from Helicobacter pylori in complex with inhibitor 35
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-05
Authors: Zhang, L., Zhang, L.
PDB entry 9lt9: Crystal structure of Gle1 from Debaryomyces hansenii
Classification: RNA BINDING PROTEIN
Source organism: Debaryomyces hansenii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-05
Authors: Jang, M.J., Chang, J.H.
PDB entry 9lta: Crystal Structure of Compound SKLB-D18 with MAPK7 (ERK5)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-02-05
Authors: Xiao, H., Sun, Q.
PDB entry 9ltb: Crystal structure of Altererythrobacter sp. S1-5 Tryptophan halogenase putative
Classification: TRANSFERASE
Source organism: Altererythrobacter sp. S1-5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2025-02-05
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 9ltf: Crystal structure of mSTING-TTB
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-02-06
Authors: Zhang, C.G., Hou, Y.F., Liu, P.Y., Fan, S.L.
PDB entry 9lth: Crystal structure of transcriptional regulator (NrpR) from Streptococcus salivarius K12
Classification: TRANSCRIPTION
Source organism: Streptococcus salivarius K12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-02-06
Authors: Do, H., Nguyen, D.l., Kumaraswami, M.
PDB entry 9lti: Cryo-EM structure of LH1-RC from Ery. sanguineus
Classification: PHOTOSYNTHESIS
Source organism: Erythrobacter sanguineus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2025-02-06
Authors: Yue, X.-Y., Wang, G.-L., Yu, L.-J.
PDB entry 9ltj: Cryo-EM structure of DDB1-DDA1-DET1 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-02-06
Authors: Su, M.-Y., Wang, S., Teng, F.
PDB entry 9ltk: Crystal structur of Lpg1618(R215F) from Legionella pneumophila
Classification: HYDROLASE
Source organism: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-06
Authors: Liu, T., Gao, J., Ge, H.
PDB entry 9ltl: Cryo-EM structure of DDB1-DDA1-DET1 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-02-06
Authors: Su, M.-Y., Wang, S., Teng, F.
PDB entry 9lto: Cryo-EM structure of DDB1-DDA1-DET1-Ube2e2 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-02-06
Authors: Su, M.-Y., Wang, S., Teng, F.
PDB entry 9ltp: Crystal structure of human RAB43 in GDP-AlF3 transition state complex with USP6NL TBC domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2025-02-06
Authors: Wang, J., Yan, W.P.
PDB entry 9ltq: Crystal structure of human RAB43 in complex with GppNHp
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-06
Authors: Wang, J., Yan, W.P.
PDB entry 9ltr: Cryo-EM structure of dimeric DDB1-DDA1-DET1-Ube2e2-COP1 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-02-06
Authors: Su, M.-Y., Wang, S., Teng, F.
PDB entry 9lts: Cryo-EM structure of the Dinoroseobacter shibae RC-LH1 supercomplex
Classification: PHOTOSYNTHESIS
Source organism: Dinoroseobacter shibae DFL 12 = DSM 16493
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-02-06
Authors: Liu, Z.K., Wang, P., Liu, L.N.
PDB entry 9ltu: Cryo-EM structure of the Dinoroseobacter shibae RC-LH1 supercomplex with incomplete LH1 ring(State 1)
Classification: PHOTOSYNTHESIS
Source organism: Dinoroseobacter shibae DFL 12 = DSM 16493
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2025-02-06
Authors: Liu, Z.K., Wang, P., Liu, L.N.
PDB entry 9ltv: Cryo-EM structure of the Dinoroseobacter shibae RC-LH1 supercomplex with incomplete LH1 ring(State 2)
Classification: PHOTOSYNTHESIS
Source organism: Dinoroseobacter shibae DFL 12 = DSM 16493
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-02-06
Authors: Liu, Z.K., Wang, P., Liu, L.N.
PDB entry 9ltw: protein structure of DDB1-DDA1-DET1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-02-06
Authors: Su, M.-Y., Wang, S., Teng, F.
PDB entry 9ltx: Crystal structure of a polyketide decarboxylase Abx(+)O from Actinomycetes sp. MA7150
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomycetota bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-02-06
Authors: Luo, S., Zhu, C., Jiang, K., Qu, X.
PDB entry 9lty: Crystal Structure of C-terminal stable fragment of the Shaft pilin EbpC from Enterococcus faecalis
Classification: CELL ADHESION
Source organism: Enterococcus faecalis OG1RF
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-07
Authors: Sharma, V., Krishnan, V.
PDB entry 9ltz: protein structure of DDB1-DDA1-DET1-Ube2e2 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-02-07
Authors: Su, M.-Y., Wang, S., Teng, F.
PDB entry 9lu0: Crystal Structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix 333K
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-02-07
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9lu1: protein structure of DDB1-DDA1-DET1-Ube2e2 bound to COP1 dimer
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2025-02-07
Authors: Su, M.-Y., Wang, S., Teng, F.
PDB entry 9lu2: Crystal structure of Pseudoalteromonas sp. L11-2 tryptophan halogenase putative
Classification: TRANSFERASE
Source organism: Pseudoalteromonas
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2025-02-07
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 9lu3: LN1F9 Fab bound to Nipah Virus attachment (G) glycoprotein head domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Henipavirus nipahense; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-02-07
Authors: Deng, Z., Kuang, W.
PDB entry 9lu4: Structure of bacteriophage T4 neck protein gp13 and gp14 assembled in vitro in C6 symmetry
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-02-07
Authors: Han, L., Mao, Q., Sun, L.
PDB entry 9lu5: Structure of bacteriophage T4 neck protein gp13 and gp14 and Hfq assembled in vitro in C6 symmetry
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-02-07
Authors: Han, L., Mao, Q., Sun, L.
PDB entry 9lu6: Structure of bacteriophage T4 protal-neck protein gp20-gp13-gp14-Hfq assembled in vitro in C6 symmetry
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-02-07
Authors: Han, L., Mao, Q., Sun, L.
PDB entry 9lu7: Structure of bacteriophage T4 protal-neck mismatch complex gp20-gp14-gp13 assembled in vitro in C6 symmetry
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-02-07
Authors: Han, L., Mao, Q., Sun, L.
PDB entry 9lu8: Structure of yeast 1,3-beta-glucan synthase FKS2
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-02-08
Authors: Xiang, W., Jialu, L.
PDB entry 9lu9: The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 1
Classification: MOTOR PROTEIN
Source organism: Escherichia coli; Paenibacillus sp. TCA20
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-08
Authors: Onoe, S., Nishikino, T., Kinoshita, M., Kishikawa, J., Kato, T.
PDB entry 9lub: The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 2
Classification: MOTOR PROTEIN
Source organism: Escherichia coli; Paenibacillus sp. TCA20
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-08
Authors: Onoe, S., Nishikino, T., Kinoshita, M., Kishikawa, J., Kato, T.
PDB entry 9luc: The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 3
Classification: MOTOR PROTEIN
Source organism: Paenibacillus sp. TCA20
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-08
Authors: Onoe, S., Nishikino, T., Kinoshita, M., Kishikawa, J., Kato, T.
PDB entry 9lud: Crystal structure of 9-mer peptide from H5N1 avian influenza virus in complex with B4 DUCK MHC I (UAA*76)
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.501 Å
Deposited: 2025-02-08
Authors: Gao, F., Li, Y.L., Dai, M.M., Liao, M.
PDB entry 9lue: Cryo-EM structure of the Nipah G head domain in complex with three Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Henipavirus nipahense; Mesocricetus auratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-02-08
Authors: Wang, Y., Deng, Z., Zhao, H.
PDB entry 9luf: Crystal structure of SARS-Cov-2 main protease S144A mutant in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-02-08
Authors: Zhou, X.L., Li, J.
PDB entry 9lug: Crystal structure of SARS-Cov-2 main protease E166V mutant in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-02-08
Authors: Zhou, X.L., Li, J.
PDB entry 9luk: Crystal structure of Switchbody based on anti-osteocalcin antibody KTM219 Fab
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-02-08
Authors: Yazaki, S., Yasuda, T., Kitaguchi, T., Ueda, H., Arai, R.
PDB entry 9lul: Local refinement of stacked like DDB1-DDA1-DET1-Ube2e2-COP1 complex (layer 1)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.99 Å
Deposited: 2025-02-09
Authors: Su, M.-Y., Wang, S., Teng, F.
PDB entry 9lum: Cryo-EM structure of Arabidopsis thaliana RGA in complex with GID1A
Classification: HORMONE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-02-09
Authors: Islam, S., Park, K., Kwon, E., Kim, D.Y.
PDB entry 9lun: Cryo-EM structure of Arabidopsis thaliana RGA in complex with GID1A, SLY1, and ASK2 (consensus map)
Classification: HORMONE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-09
Authors: Islam, S., Park, K., Kwon, E., Kim, D.Y.
PDB entry 9luo: Cryo-EM structure of Arabidopsis thaliana RGA in complex with GID1A, SLY1, and ASK2 (focused map)
Classification: HORMONE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-02-09
Authors: Islam, S., Park, K., Kwon, E., Kim, D.Y.
PDB entry 9lup: Cryo-EM structure of Arabidopsis thaliana RGA in complex with GID1A, SLY1, and ASK2 (composite map)
Classification: HORMONE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-09
Authors: Islam, S., Park, K., Kwon, E., Kim, D.Y.
PDB entry 9luq: Crystal structure of Pseudoalteromonas sp.L11 Tryptophan halogenase
Classification: TRANSFERASE
Source organism: Pseudoalteromonas
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-02-09
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 9lus: Structure of human G9a SET-domain in complex with FLAV27 inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-02-10
Authors: Singh, R.K., Dai, S.
PDB entry 9lut: PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha
Classification: PHOTOSYNTHESIS
Source organism: Marchantia polymorpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.94 Å
Deposited: 2025-02-10
Authors: Tsai, P.-C., La Rocca, R., Shen, J.-R., Akita, F.
PDB entry 9luu: PSI-4 LHCI dimer supercomplex from M. polymorpha
Classification: PHOTOSYNTHESIS
Source organism: Marchantia polymorpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2025-02-10
Authors: Tsai, P.-C., La Rocca, R., Shen, J.-R., Akita, F.
PDB entry 9luv: Cryo-EM analysis of TLR7 in complex with mGrUrC
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-10
Authors: Zhang, Z., Ohto, U., Shimizu, T.
PDB entry 9luw: Enhancing Monodispersity and Thermal Stability of Human H-Ferritin for Improved Applications in Nanocarrier Systems
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-10
Authors: Gu, C.K., Wang, S.J.
PDB entry 9lux: Single-chain Fv antibody of G2 fused with antigen peptide from chicken prion protein
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-10
Authors: Hanazono, Y., Yabuno, S., Hayashi, T., Numoto, N., Ito, N., Oda, M.
PDB entry 9luy: Single-chain Fv antibody of G2 fused with antigen peptide from chicken chromosome 6 C10orf76 homolog
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-02-10
Authors: Hanazono, Y., Yabuno, S., Hayashi, T., Numoto, N., Ito, N., Oda, M.
PDB entry 9luz: Carotenoid Cleavage Dioxygenase 1 from Osmanthus fragrans
Classification: PLANT PROTEIN
Source organism: Osmanthus fragrans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-10
Authors: Sharma, D., Xue, B.
PDB entry 9lv1: Crystal structure of H1 Haemagglutinin HN/18 from Influenza A virus
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-11
Authors: Deng, G., Wei, X., Sun, H.
PDB entry 9lv2: Crystal structure of H1 Haemagglutinin HN/18-HA2-L113S from Influenza A virus
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-02-11
Authors: Deng, G., Wei, X., Sun, H.
PDB entry 9lv3: Crystal structure of mutant H1 Haemagglutinin HN/18-HA FPP from Influenza A virus
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-02-11
Authors: Deng, G., Wei, X., Sun, H.
PDB entry 9lv4: Cryo-EM Structure of Human Tie2/minibinder tw1102_4 helices Complex
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-02-11
Authors: Fu, Y., Kim, H.M.
PDB entry 9lv9: Octamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-02-11
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9lva: IAA-bound AUX1
Classification: PROTEIN TRANSPORT
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-02-12
Authors: Wang, C.C., Jing, D., Kong, F., Huang, G.X.Y., Shi, Y.G.
PDB entry 9lvb: IAA-free AUX1
Classification: PROTEIN TRANSPORT/IMMUNE SYSTEM
Source organism: Arabidopsis thaliana; Escherichia coli; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2025-02-12
Authors: Jing, D., Kong, F., Wang, C.C., Shi, Y.G., Huang, G.X.Y.
PDB entry 9lvc: Temperature induces a shift from the dihexamer to the hexamer form of insulin
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-12
Authors: Ayan, E., Kepceoglu, A.
PDB entry 9lvd: Temperature induces a shift from the dihexamer to the hexamer form of insulin (200K)
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-02-12
Authors: Ayan, E., Kepceoglu, A.
PDB entry 9lve: Temperature induces a shift from the dihexamer to the hexamer form of insulin (300K)
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2025-02-12
Authors: Ayan, E., Kepceoglu, A.
PDB entry 9lvg: Crystal structure of the mouse RIP3 kinase domain in complexed with Robinetin
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-02-12
Authors: Xie, H., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9lvh: Crystal structure of the mouse RIP3 kinase domain in complexed with Tricetin
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-02-12
Authors: Xie, H., Su, H.X., Li, M.J., Xu, Y.C.