LiteFold/PDB huggingface dataset:
PDB entry 7p43: Structure of CgGBE in complex with maltotriose
Classification: CARBOHYDRATE
Source organism: Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-07-09
Authors: Ballut, L., Conchou, L., Violot, S., Galisson, F., Aghajari, N.
PDB entry 7p44: Structure of CgGBE in P21212 space group
Classification: CARBOHYDRATE
Source organism: Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-09
Authors: Ballut, L., Conchou, L., Violot, S., Galisson, F., Aghajari, N.
PDB entry 7p45: Structure of CgGBE in P212121 space group
Classification: LYASE
Source organism: Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-07-09
Authors: Ballut, L., Conchou, L., Violot, S., Galisson, F., Aghajari, N.
PDB entry 7p46: Crystal Structure of Xanthomonas campestris Tryptophan 2,3-dioxygenase (TDO)
Classification: OXIDOREDUCTASE
Source organism: Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-07-09
Authors: Kwon, H., Basran, J., Booth, E.S., Campbell, L.P., Thackray, S.J., Moody, P.C.E., Mowat, C.G., Raven, E.L.
PDB entry 7p47: Structure of the E3 ligase Smc5/Nse2 in complex with Ubc9-SUMO thioester mimetic
Classification: LIGASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.314 Å
Deposited: 2021-07-09
Authors: Lascorz, J., Varejao, N., Reverter, D.
PDB entry 7p48: Staphylococcus aureus ribosome in complex with Sal(B)
Classification: RIBOSOMAL PROTEIN
Source organism: Staphylococcus aureus; Staphylococcus lentus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-07-09
Authors: Nicholson, D., Ranson, N.A., O'Neill, A.J.
PDB entry 7p49: HLA-E*01:03 in complex with Mtb14
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-07-10
Authors: Walters, L.C., Gillespie, G.M.
PDB entry 7p4a: Non-canonical Staphylococcus aureus pathogenicity island repression.
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.901 Å
Deposited: 2021-07-10
Authors: Miguel-Romero, L., Alqasmi, M., Bacarizo, J., Tan, J.A., Cogdell, R.J., Chen, J., Byron, O., Christie, G.E., Marina, A., Penades, J.R.
PDB entry 7p4b: HLA-E*01:03 in complex with IL9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2021-07-10
Authors: Walters, L.C., Gillespie, G.M.
PDB entry 7p4c: Crystal Structure of Agd31B, alpha-transglucosylase in Glycoside Hydrolase Family 31, in complex with noncovalent Cyclophellitol Sulfamidate probe KK131
Classification: HYDROLASE
Source organism: Cellvibrio japonicus (strain Ueda107)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2021-07-11
Authors: Wu, L., Davies, G.J.
PDB entry 7p4d: Crystal Structure of Agd31B, alpha-transglucosylase in Glycoside Hydrolase Family 31, in complex with covalent Cyclophellitol Sulfamidate probe KK130
Classification: HYDROLASE
Source organism: Cellvibrio japonicus Ueda107
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-07-11
Authors: Wu, L., Davies, G.J.
PDB entry 7p4e: Crystal structure of PPARgamma in complex with compound FL217
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-11
Authors: Ni, X., Lillich, F., Proschak, E., Chaikuad, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 7p4f: Crystal Structure of Monoamine Oxidase B in complex with inhibitor 1
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-07-11
Authors: Iacovino, L.G., Binda, C., Pisani, L.
PDB entry 7p4g: Rabbit Muscle L-lactate dehydrogenase in complex with citrate
Classification: OXIDOREDUCTASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-07-11
Authors: Iacovino, L.G., Binda, C., Hochkoeppler, A.
PDB entry 7p4h: Crystal Structure of Monoamine Oxidase B in complex with inhibitor (+)-2
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-11
Authors: Iacovino, L.G., Binda, C., Pisani, L.
PDB entry 7p4i: Structure of human ASCT1 transporter
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-07-11
Authors: Stetsenko, A., Stehantsev, P., Gati, C., Guskov, A.
PDB entry 7p4j: Crystal structure of Autotaxin and tetrahydrocannabinol
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2021-07-11
Authors: Eymery, M.C., McCarthy, A.A., Hausmann, J.
PDB entry 7p4k: Soluble epoxide hydrolase in complex with FL217
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-07-11
Authors: Ni, X., Kramer, J.S., Lillich, F., Proschak, E., Chaikuad, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 7p4l: Crystal structure of the trimeric ectodomain of archaeal Fusexin1 (Fsx1)
Classification: MEMBRANE PROTEIN
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-07-12
Authors: Nishio, S., Tunyasuvunakool, K., Jumper, J., De Sanctis, D., Jovine, L.
PDB entry 7p4m: Structure of the quinolinate synthase Y107F variant in an empty open form
Classification: TRANSFERASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-07-12
Authors: Volbeda, A.
PDB entry 7p4n: NMR solution structure of the C6 domain of von Willebrand Factor
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2021-07-12
Authors: Hennig, J., Chen, P.-C., Simon, B.
PDB entry 7p4o: Crystal structure of Autotaxin and 9(R)-delta6a,10a-THC
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2021-07-12
Authors: Eymery, M.C., McCarthy, A.A., Hausmann, J.
PDB entry 7p4p: Structure of the quinolinate synthase A84L variant complexed with citrate
Classification: TRANSFERASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-07-12
Authors: Volbeda, A.
PDB entry 7p4q: Structure of the quinolinate synthase S124A variant complexed with citrate
Classification: TRANSFERASE
Source organism: Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-12
Authors: Volbeda, A.
PDB entry 7p4r: Ultra High Resolution X-ray Structure of Orthorhombic Bovine Pancreatic Ribonuclease at 100K
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.85 Å
Deposited: 2021-07-12
Authors: Lisgarten, D.R., Palmer, R.A., Cooper, J.B., Naylor, C.E., Howlin, B.J., Lisgarten, J.N., Najmudin, S., Lobley, C.M.C.
PDB entry 7p4s: BROMODOMAIN OF HUMAN TAF1 (2) WITH naphthyridinone compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2021-07-13
Authors: Chung, C.
PDB entry 7p4t: Tetrameric structure of murine SapA
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2021-07-13
Authors: Shamin, M., Deane, J.E.
PDB entry 7p4u: Crystal structure of PqsR (MvfR) ligand-binding domain in complex with 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE
Classification: GENE REGULATION
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2021-07-13
Authors: Schmelz, S., Blankenfeldt, W.
PDB entry 7p4v: GlnK1 from Methanothermococcus thermolithotrophicus with dADP at a resolution of 1.94 A
Classification: SIGNALING PROTEIN
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2021-07-13
Authors: Mueller, M.-C., Wagner, T.
PDB entry 7p4w: Crystal structure of alpha-amylase from Aspergillus oryzae in space group I222
Classification: HYDROLASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2021-07-13
Authors: Bellini, D., Gorrec, F.
PDB entry 7p4x: SOLUTION NMR STRUCTURE OF PALUSTRIN-CA IN 50% TRIFLUOROETHANOL
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-13
Authors: Timmons, P.B., Hewage, C.M.
PDB entry 7p4y: GlnK2 from Methanothermococcus thermolithotrophicus in the apo state at a resolution of 2.3 A
Classification: SIGNALING PROTEIN
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-07-13
Authors: Mueller, M.-C., Wagner, T.
PDB entry 7p4z: Crystal structure of avidin from hen egg white in space group C2
Classification: ANTIMICROBIAL PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-13
Authors: Bellini, D., Gorrec, F.
PDB entry 7p50: GlnK2 from Methanothermococcus thermolithotrophicus in complex with Mg-ATP and 2-oxoglutarate at a resolution of 1.16 A
Classification: SIGNALING PROTEIN
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2021-07-13
Authors: Mueller, M.-C., Wagner, T.
PDB entry 7p51: CRYSTAL STRUCTURE OF THE SARS-COV-2 MAIN PROTEASE COMPLEXED WITH FRAGMENT F01
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.474 Å
Deposited: 2021-07-13
Authors: Hanoulle, X., Moschidi, D.
PDB entry 7p52: GlnK1 from Methanocaldococcus jannaschii with Mg-ATP and 2-oxoglutarate at a resolution of 1.2 A
Classification: SIGNALING PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 1.20002 Å
Deposited: 2021-07-13
Authors: Mueller, M.-C., Wagner, T.
PDB entry 7p53: Crystal Structure of Human gamma-D-crystallin mutant C110M at 1.57 Angstroms resolution
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2021-07-14
Authors: Strofaldi, A., Khan, A.R., McManus, J.
PDB entry 7p54: Cryo-EM structure of human TTYH2 in GDN
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-14
Authors: Sukalskaia, A., Straub, M.S., Sawicka, M., Deneka, D., Dutzler, R.
PDB entry 7p55: NMR structure of human ACE2 21-42 fragment in HFIP/water 50/50 v/v
Classification: ANTIVIRAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-14
Authors: Santoro, A., Buonocore, M., Grimaldi, M., D'Ursi, A.M.
PDB entry 7p56: Variant Surface Glycoprotein 2 (VSG2, MiTat1.2, VSG221) Bound to Calcium
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.735 Å
Deposited: 2021-07-14
Authors: Gkeka, A., Aresta-Branco, F., Stebbins, C.E., Papavasiliou, F.N.
PDB entry 7p57: VSG2 mutant structure lacking the calcium binding pocket
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.961 Å
Deposited: 2021-07-14
Authors: Gkeka, A., Aresta-Branco, F., Stebbins, C.E., Papavasiliou, F.N.
PDB entry 7p58: Pyrazole Carboxylic Acid Inhibitors of KEAP1:NRF2 interaction
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.886 Å
Deposited: 2021-07-14
Authors: Davies, T.G.
PDB entry 7p59: Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) with two O-linked post-translational modifications
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2021-07-14
Authors: Gkeka, A., Arest-Branco, F., Stebbins, C.E., Papavasiliou, F.N.
PDB entry 7p5a: Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 317 to alanine), single O-linked glycosylated at Ser319
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-07-14
Authors: Gkeka, A., Aresta-Branco, F., Stebbins, C.E., Papavasiliou, F.N.
PDB entry 7p5b: Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 319 to alanine), single O-linked glycosylated at Ser317
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2021-07-14
Authors: Gkeka, A., Aresta-Branco, F., Stebbins, C.E., Papavasiliou, F.N.
PDB entry 7p5c: Cryo-EM structure of human TTYH3 in Ca2+ and GDN
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-14
Authors: Sukalskaia, A., Straub, M.S., Sawicka, M., Deneka, D., Dutzler, R.
PDB entry 7p5d: Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 317 and 319 to alanine)
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2021-07-14
Authors: Gkeka, A., Aresta-Branco, F., Stebbins, C.E., Papavasiliou, F.N.
PDB entry 7p5e: Pyrazole Carboxylic Acid Inhibitors of KEAP1:NRF2 interaction
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.874 Å
Deposited: 2021-07-14
Authors: Davies, T.G., Cleasby, A.
PDB entry 7p5f: Pyrazole Carboxylic Acid Inhibitors of KEAP1:NRF2 interaction
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-07-14
Authors: Davies, T.G.
PDB entry 7p5g: NMR structure of a peptide deriving from SARS-CoV-2 S RBD 482-506 fragment in HFIP/H2O
Classification: ANTIVIRAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-14
Authors: Santoro, A., Buonocore, M., Grimaldi, M., D'Ursi, A.M.
PDB entry 7p5h: TmHydABC- D2 map
Classification: OXIDOREDUCTASE
Source organism: Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2021-07-14
Authors: Furlan, C., Chongdar, N., Gupta, P., Lubitz, W., Ogata, H., Blaza, J.N., Birrell, J.A.
PDB entry 7p5i: Pyrazole Carboxylic Acid Inhibitors of KEAP1:NRF2 interaction
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2021-07-14
Authors: Davies, T.G., Cleasby, A.
PDB entry 7p5j: Cryo-EM structure of human TTYH1 in GDN
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-07-14
Authors: Sukalskaia, A., Straub, M.S., Sawicka, M., Deneka, D., Dutzler, R.
PDB entry 7p5k: Pyrazole Carboxylic Acid Inhibitors of KEAP1:NRF2 interaction
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2021-07-14
Authors: Davies, T.G.
PDB entry 7p5l: Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.1 - apo form
Classification: TRANSFERASE
Source organism: Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2021-07-14
Authors: Silva, A., Nunes-Costa, D., Barbosa Pereira, P.J., Macedo-Ribeiro, S.
PDB entry 7p5m: Cryo-EM structure of human TTYH2 in lipid nanodiscs
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2021-07-14
Authors: Sukalskaia, A., Straub, M.S., Sawicka, M., Deneka, D., Dutzler, R.
PDB entry 7p5n: Pyrazole Carboxylic Acid Inhibitors of KEAP1:NRF2 interaction
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2021-07-14
Authors: Davies, T.G.
PDB entry 7p5o: Crystal structure of Aspergillus fumigatus phosphoglucomutase in complex with the reaction intermediate
Classification: ISOMERASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2021-07-14
Authors: Raimi, O.G., Yan, K., van Aalten, D.M.F.
PDB entry 7p5p: Pyrazole Carboxylic Acid Inhibitors of KEAP1:NRF2 interaction
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-07-14
Authors: Davies, T.G.
PDB entry 7p5q: NMR structure of a peptide deriving from SARS-CoV-2 Lineage B.1.1.7 S RBD 482-506 fragment in HFIP/H2O
Classification: ANTIVIRAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-14
Authors: Santoro, A., Buonocore, M., Grimaldi, M., D'Ursi, A.M.
PDB entry 7p5r: Racemic protein crystal structure of lacticin Q from Lactococcus lactis
Classification: ANTIMICROBIAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.96 Å
Deposited: 2021-07-14
Authors: Lander, A.J., Li, X., Baumann, P., Rizkallah, P., Luk, L.Y.P., Jin, Y.
PDB entry 7p5s: NMR structure of a peptide deriving from SARS-CoV-2 Lineages P.1 and B.1.351 S RBD 482-506 fragment in HFIP/H2O
Classification: ANTIVIRAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-14
Authors: Santoro, A., Buonocore, M., Grimaldi, M., D'Ursi, A.M.
PDB entry 7p5t: Structure of CYP142 from Mycobacterium tuberculosis in complex with inhibitor MEK216
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2021-07-14
Authors: Snee, M., Kavanagh, M., Tunnicliffe, R., McLean, K., Levy, C., Munro, A.
PDB entry 7p5u: Neuropilin-b1 in a complex with a VEGFB-derived peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-07-14
Authors: Fotinou, C., Rhana, R., Yelland, T.
PDB entry 7p5v: Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2021-07-15
Authors: Deneka, D., Rutz, S., Sawicka, M.
PDB entry 7p5w: Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-07-15
Authors: Deneka, D., Rutz, S., Sawicka, M.
PDB entry 7p5x: Mycobacterial RNAP with transcriptional activator PafBC
Classification: TRANSCRIPTION
Source organism: Mycolicibacterium smegmatis MC2 155; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-15
Authors: Mueller, A.U., Kummer, E., Schilling, C.M., Ban, N., Weber-Ban, E.
PDB entry 7p5y: Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb3
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2021-07-15
Authors: Deneka, D., Rutz, S., Sawicka, M.
PDB entry 7p5z: Structure of a DNA-loaded MCM double hexamer engaged with the Dbf4-dependent kinase
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-15
Authors: Greiwe, J.F., Miller, T.C.R., Martino, F., Costa, A.
PDB entry 7p60: Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb4 at 1:0.5 ratio
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-07-15
Authors: Deneka, D., Rutz, S., Sawicka, M.
PDB entry 7p61: Complex I from E. coli, DDM-purified, with NADH, Resting state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-15
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p62: Complex I from E. coli, DDM-purified, Apo, Resting state
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-15
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p63: Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 6, Closed state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-15
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p64: Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 6, Open state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2021-07-15
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p65: Progressive supranuclear palsy tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p66: Globular glial tauopathy type 1 tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p67: Globular glial tauopathy type 2 tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p68: Globular glial tauopathy type 3 tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p69: Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 6, Resting state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-15
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p6a: Limbic-predominant neuronal inclusion body 4R tauopathy type 1a tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p6b: Limbic-predominant neuronal inclusion body 4R tauopathy type 1b tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p6c: Limbic-predominant neuronal inclusion body 4R tauopathy type 2 tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p6d: Argyrophilic grain disease type 1 tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p6e: Argyrophilic grain disease type 2 tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-15
Authors: Shi, Y., Zhang, W., Yang, Y., Murzin, A.G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H.J., Vidal, R., Hallinan, G.I., Lashley, T., Saito, Y., Murayama, S., Yoshida, M., Tanaka, H., Kakita, A., Ikeuchi, T., Robinson, A.C., Mann, D.M.A., Kovacs, G.G., Revesz, T., Ghetti, B., Hasegawa, M., Goedert, M., Scheres, S.H.W.
PDB entry 7p6f: 1.93 A resolution X-ray crystal structure of the transcriptional regulator SrnR from Streptomyces griseus
Classification: DNA BINDING PROTEIN
Source organism: Streptomyces griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-07-16
Authors: Mazzei, L., Ciurli, S.
PDB entry 7p6g: Crystal structure of the endoglucanase RBcel1 E135Q
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2021-07-16
Authors: Collet, L., Dutoit, R.
PDB entry 7p6h: Crystal structure of the endoglucanase RBcel1 E135Q in complex with cellotriose
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2021-07-16
Authors: Collet, L., Dutoit, R.
PDB entry 7p6i: Crystal structure of the endoglucanase RBcel1 Y201F
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2021-07-16
Authors: Collet, L., Dutoit, R.
PDB entry 7p6j: Crystal structure of glycosyl-enzyme intermediate of RBcel1 Y201F
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-07-16
Authors: Collet, L., Dutoit, R.
PDB entry 7p6k: Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb5
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-07-16
Authors: Deneka, D., Rutz, S., Sawicka, M.
PDB entry 7p6l: Heme domain of CYP505A30, a fungal hydroxylase from Myceliophthora thermophila, bound to dodecanoic acid
Classification: OXIDOREDUCTASE
Source organism: Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2021-07-16
Authors: Opperman, D.J., Aschenbrenner, J.C., Tolmie, C., Ebrecht, A.C.
PDB entry 7p6m: Hydrogenated refolded hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.89 Å
Deposited: 2021-07-16
Authors: Ramos, J., Laux, V., Haertlein, M., Forsyth, V.T., Mossou, E., Larsen, S., Langkilde, A.E.
PDB entry 7p6n: ROCK2 IN COMPLEX WITH COMPOUND 12
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-16
Authors: Maillard, M.C.
PDB entry 7p6o: ROCK2 IN COMPLEX WITH COMPOUND 8
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2021-07-16
Authors: Maillard, M.C.
PDB entry 7p6p: ROCK2 IN COMPLEX WITH COMPOUND 17
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2021-07-16
Authors: Maillard, M.C.
PDB entry 7p6q: ROCK2 IN COMPLEX WITH COMPOUND 21
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2021-07-16
Authors: Maillard, M.C.
PDB entry 7p6r: Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form I)
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-17
Authors: Stsiapanava, A., Tunyasuvunakool, K., Jumper, J., de Sanctis, D., Jovine, L.
PDB entry 7p6s: Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form II)
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2021-07-17
Authors: Stsiapanava, A., Tunyasuvunakool, K., Jumper, J., de Sanctis, D., Jovine, L.
PDB entry 7p6t: Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form III)
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-07-17
Authors: Stsiapanava, A., Tunyasuvunakool, K., Jumper, J., de Sanctis, D., Jovine, L.
PDB entry 7p6u: Lon protease from Thermus Thermophilus
Classification: CELL CYCLE
Source organism: Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-07-18
Authors: Coscia, F., Lowe, J.
PDB entry 7p6v: N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH compound 3ag
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2021-07-18
Authors: Chung, C.
PDB entry 7p6w: N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH compound 3bg
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2021-07-18
Authors: Chung, C.
PDB entry 7p6x: Cryo-Em structure of the hexameric RUVBL1-RUVBL2 in complex with ZNHIT2
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-07-18
Authors: Llorca, O., Serna, M., Fernandez-Leiro, R.
PDB entry 7p6y: N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH compound 5ef
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.881 Å
Deposited: 2021-07-18
Authors: Chung, C.
PDB entry 7p6z: Mycoplasma pneumoniae 70S ribosome in untreated cells
Classification: RIBOSOME
Source organism: Mycoplasma pneumoniae M129
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-07-18
Authors: Xue, L., Lenz, S., Rappsilber, J., Mahamid, J.
PDB entry 7p70: The PDZ-domain of SNTB1 complexed with the PDZ-binding motif of HPV35-E6
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-19
Authors: Gogl, G., Cousido-Siah, A., Trave, G.
PDB entry 7p71: The PDZ domain of MAGI1_2 complexed with the PDZ-binding motif of HPV35-E6
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-07-19
Authors: Gogl, G., Cousido-Siah, A., Trave, G.
PDB entry 7p72: The PDZ domain of SNX27 complexed with the PDZ-binding motif of MERS-E
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-07-19
Authors: Gogl, G., Cousido-Siah, A., Trave, G.
PDB entry 7p73: The PDZ domain of SYNJ2BP complexed with the PDZ-binding motif of HTLV1-TAX1
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-07-19
Authors: Gogl, G., Cousido-Siah, A., Trave, G.
PDB entry 7p74: The PDZ domain of SYNJ2BP complexed with the phosphorylated PDZ-binding motif of RSK1
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-19
Authors: Gogl, G., Cousido-Siah, A., Trave, G.
PDB entry 7p75: Re-engineered 2-deoxy-D-ribose-5-phosphate aldolase catalysing asymmetric Michael addition reactions in substrate-free state
Classification: LYASE
Source organism: Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2021-07-19
Authors: Thunnissen, A.M.W.H., Rozeboom, H.J., Kunzendorf, A., Poelarends, G.J.
PDB entry 7p76: Re-engineered 2-deoxy-D-ribose-5-phosphate aldolase catalysing asymmetric Michael addition reactions, Schiff base complex with cinnamaldehyde
Classification: LYASE
Source organism: Escherichia coli 909945-2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-19
Authors: Thunnissen, A.M.W.H., Rozeboom, H.J., Kunzendorf, A., Poelarends, G.J.
PDB entry 7p77: SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 3up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2021-07-19
Authors: Walter, J.D., Hutter, C.A.J., Garaeva, A.A., Scherer, M., Zimmermann, I., Wyss, M., Rheinberger, J., Ruedin, Y., Earp, J.C., Egloff, P., Sorgenfrei, M., Huerlimann, L.M., Gonda, I., Meier, G., Remm, S., Thavarasah, S., Zimmer, G., Slotboom, D.J., Paulino, C., Plattet, P., Seeger, M.A.
PDB entry 7p78: SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 1up/1up-out/1down conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2021-07-19
Authors: Walter, J.D., Hutter, C.A.J., Garaeva, A.A., Scherer, M., Zimmermann, I., Wyss, M., Rheinberger, J., Ruedin, Y., Earp, J.C., Egloff, P., Sorgenfrei, M., Huerlimann, L.M., Gonda, I., Meier, G., Remm, S., Thavarasah, S., Zimmer, G., Slotboom, D.J., Paulino, C., Plattet, P., Seeger, M.A.
PDB entry 7p79: SARS-CoV-2 spike protein in complex with sybodyb#15 in a 1up/1up-out/1down conformation.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-07-19
Authors: Walter, J.D., Hutter, C.A.J., Garaeva, A.A., Scherer, M., Zimmermann, I., Wyss, M., Rheinberger, J., Ruedin, Y., Earp, J.C., Egloff, P., Sorgenfrei, M., Huerlimann, L.M., Gonda, I., Meier, G., Remm, S., Thavarasah, S., Zimmer, G., Slotboom, D.J., Paulino, C., Plattet, P., Seeger, M.A.
PDB entry 7p7a: SARS-CoV-2 spike protein in complex with sybody#68 in a 2up/1flexible conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.76 Å
Deposited: 2021-07-19
Authors: Walter, J.D., Hutter, C.A.J., Garaeva, A.A., Scherer, M., Zimmermann, I., Wyss, M., Rheinberger, J., Ruedin, Y., Earp, J.C., Egloff, P., Sorgenfrei, M., Huerlimann, L.M., Gonda, I., Meier, G., Remm, S., Thavarasah, S., Zimmer, G., Slotboom, D.J., Paulino, C., Plattet, P., Seeger, M.A.
PDB entry 7p7b: SARS-CoV-2 spike protein in complex with sybody no68 in a 1up/2down conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2021-07-19
Authors: Walter, J.D., Hutter, C.A.J., Garaeva, A.A., Scherer, M., Zimmermann, I., Wyss, M., Rheinberger, J., Ruedin, Y., Earp, J.C., Egloff, P., Sorgenfrei, M., Huerlimann, L.M., Gonda, I., Meier, G., Remm, S., Thavarasah, S., Zimmer, G., Slotboom, D.J., Paulino, C., Plattet, P., Seeger, M.A.
PDB entry 7p7c: Complex I from E. coli, DDM/LMNG-purified, Apo, Open state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2021-07-19
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p7d: Rabbit muscle Glycogen Phosphorylase T state
Classification: TRANSFERASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-07-19
Authors: Stravodimos, G.A., Leonidas, D.D.
PDB entry 7p7e: Complex I from E. coli, DDM/LMNG-purified, Apo, Resting state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-07-19
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p7f: Crystal structure of phosphorylated pT220 Casein Kinase I delta (CK1d), conformation 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2021-07-19
Authors: Chaikuad, A., Zhubi, R., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 7p7g: Crystal structure of phosphorylated pT220 Casein Kinase I delta (CK1d), conformation 2 and 3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-07-19
Authors: Chaikuad, A., Zhubi, R., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 7p7h: Crystal structure of Casein Kinase I delta (CK1d) with alphaG-in conformation
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-19
Authors: Chaikuad, A., Zhubi, R., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 7p7i: Native structure of N-acetylglucosamine kinase from Plesiomonas shigelloides
Classification: SUGAR BINDING PROTEIN
Source organism: Plesiomonas shigelloides 302-73; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-07-19
Authors: Roy, S., Isupov, M.N., Harmer, N.J., Ames, J.R.
PDB entry 7p7j: Complex I from E. coli, DDM/LMNG-purified, with DQ, Open state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-07-19
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p7k: Complex I from E. coli, DDM/LMNG-purified, with DQ, Resting state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-19
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p7l: Complex I from E. coli, DDM/LMNG-purified, with NADH and FMN, Open state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-19
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p7m: Complex I from E. coli, DDM/LMNG-purified, inhibited by Piericidin A, Open state
Classification: PROTON TRANSPORT
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-19
Authors: Kravchuk, V., Kampjut, D., Sazanov, L.
PDB entry 7p7n: X-RAY CRYSTAL STRUCTURE OF SPOROSARCINA PASTEURII UREASE INHIBITED BY THE GOLD(I)-PHOSPHINE COMPOUND Au(PEt3)I DETERMINED AT 1.80 ANGSTROMS
Classification: HYDROLASE
Source organism: Sporosarcina pasteurii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-20
Authors: Mazzei, L., Ciurli, S.
PDB entry 7p7o: X-RAY CRYSTAL STRUCTURE OF SPOROSARCINA PASTEURII UREASE INHIBITED BY THE GOLD(I)-DIPHOSPHINE COMPOUND Au(PEt3)2Cl DETERMINED AT 1.87 ANGSTROMS
Classification: HYDROLASE
Source organism: Sporosarcina pasteurii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2021-07-20
Authors: Mazzei, L., Ciurli, S., Cianci, M., Messori, L., Massai, L.
PDB entry 7p7p: Crystal structure of ERAP2 aminopeptidase in complex with phosphinic pseudotripeptide((1R)-1-Amino-3-phenylpropyl){(2S)-3-[((2S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino]-2-{[3-(2-hydroxyphenyl)-isoxazol-5-yl]methyl}-3-oxopropyl}phosphinic acid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-20
Authors: Giastas, P., Stratikos, E., Mpakali, A.
PDB entry 7p7q: E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
Classification: RIBOSOME
Source organism: Enterococcus faecalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2021-07-20
Authors: Crowe-McAuliffe, C., Wilson, D.N.
PDB entry 7p7r: PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Classification: RIBOSOME
Source organism: Enterococcus faecalis (strain ATCC 700802 / V583); Enterococcus faecalis V583
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-07-20
Authors: Crowe-McAuliffe, C., Wilson, D.N.
PDB entry 7p7s: PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
Classification: RIBOSOME
Source organism: Enterococcus faecalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-20
Authors: Crowe-McAuliffe, C., Wilson, D.N.
PDB entry 7p7t: PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
Classification: RIBOSOME
Source organism: Enterococcus faecalis; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-07-20
Authors: Crowe-McAuliffe, C., Wilson, D.N.
PDB entry 7p7u: E. faecalis 70S ribosome with P-tRNA, state IV
Classification: RIBOSOME
Source organism: Enterococcus faecalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-20
Authors: Crowe-McAuliffe, C., Wilson, D.N.
PDB entry 7p7w: N-acetylglucosamine kinase from Plesiomonas shigelloides compexed with alpha-N-acetylglucosamine and ADP
Classification: SUGAR BINDING PROTEIN
Source organism: Plesiomonas shigelloides 302-73; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2021-07-20
Authors: Roy, S., Isupov, M.N., Harmer, N.J., Ames, J.R.
PDB entry 7p7x: Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis (holo form).
Classification: TRANSFERASE
Source organism: Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-20
Authors: Boyko, K.M., Nikolaeva, A.Y., Bakunova, A.K., Rakitina, T.V., Bezsudnova, E.Y., Popov, V.O.
PDB entry 7p7y: X-ray structure of Lactobacillus kefir alcohol dehydrogenase mutant Q126K
Classification: OXIDOREDUCTASE
Source organism: Lactobacillus kefiri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2021-07-21
Authors: Bischoff, D., Walla, B., Janowski, R., Niessing, D., Weuster-Botz, D.
PDB entry 7p80: Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compressed state)
Classification: HYDROLASE
Source organism: Bacillus subtilis (strain 168); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2021-07-21
Authors: Lee, B.-G., Kim, L., Kim, M.K., Kwon, D.H., Song, H.K.
PDB entry 7p81: Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state)
Classification: HYDROLASE
Source organism: Bacillus subtilis (strain 168); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2021-07-21
Authors: Lee, B.-G., Kim, L., Kim, M.K., Kwon, D.H., Song, H.K.
PDB entry 7p82: Crystal structure of apo form L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.042 Å
Deposited: 2021-07-21
Authors: Herrmann, E., Peters, A., Cornelissen, N.V., Rentmeister, A., Kuemmel, D.
PDB entry 7p83: Crystal structure of Apo form of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.218 Å
Deposited: 2021-07-21
Authors: Herrmann, E., Peters, A., Cornelissen, N.V., Rentmeister, A., Kuemmel, D.
PDB entry 7p84: Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii in complex with ONB-SAM (2-nitro benzyme S-adenosyl-methionine)
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.054 Å
Deposited: 2021-07-21
Authors: Herrmann, E., Peters, A., Cornelissen, N.V., Rentmeister, A., Kuemmel, D.
PDB entry 7p85: Engineered phosphotriesterase BdPTE 10-2-C3(C59V/C227V) in complex with ethyl-4-methylbenzylphosphonate
Classification: HYDROLASE
Source organism: Brevundimonas diminuta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2021-07-21
Authors: Eichinger, A., Skerra, A.
PDB entry 7p87: Crystal structure of YTHDC1 with compound YLI_DC1_001
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2021-07-21
Authors: Bedi, R.K., Li, Y., Dolbois, A., Caflisch, A.
PDB entry 7p88: Crystal structure of YTHDC1 with compound YLI_DC1_002
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-07-21
Authors: Bedi, R.K., Li, Y., Dolbois, A., Caflisch, A.