LiteFold/PDB huggingface dataset:
PDB entry 6x67: Cryo-EM structure of piggyBac transposase strand transfer complex (STC)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Trichoplusia ni; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2020-05-27
Authors: Chen, Q., Hickman, A.B., Dyda, F.
PDB entry 6x68: Cryo-EM structure of piggyBac transposase synaptic complex with hairpin DNA (SNHP)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Trichoplusia ni; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2020-05-27
Authors: Chen, Q., Hickman, A.B., Dyda, F.
PDB entry 6x6a: Cryo-EM structure of NLRP1-DPP9 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-05-27
Authors: Hollingsworth, L.R., Sharif, H., Griswold, A.R., Fontana, P., Mintseris, J., Dagbay, K.B., Paulo, J.A., Gygi, S.P., Bachovchin, D.A., Wu, H.
PDB entry 6x6b: Structure of the sulfate-bound form of ArrX from Chrysiogenes arsenatis
Classification: SIGNALING PROTEIN
Source organism: Chrysiogenes arsenatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2020-05-27
Authors: Maher, M.J., Poddar, N.
PDB entry 6x6c: Cryo-EM structure of NLRP1-DPP9-VbP complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-05-27
Authors: Hollingsworth, L.R., Sharif, H., Griswold, A.R., Fontana, P., Mintseris, J., Dagbay, K.B., Paulo, J.A., Gygi, S.P., Bachovchin, D.A., Wu, H.
PDB entry 6x6d: Glucocorticoid Receptor DNA binding domain in complex with unmodified precursor for a modern recognition element (pre-GBS)
Classification: DNA/DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2020-05-28
Authors: Liu, X., Ortlund, E.A.
PDB entry 6x6e: Glucocorticoid Receptor DNA binding domain in complex with methylated precursor for a modern recognition element (methylated pre-GBS)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-05-28
Authors: Liu, X., Ortlund, E.A.
PDB entry 6x6f: The structure of Pf6r from the filamentous phage Pf6 of Pseudomonas aeruginosa PA01
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.735 Å
Deposited: 2020-05-28
Authors: Michie, K.A., Norrian, P., Duggin, I.G., McDougald, D., Rice, S.A.
PDB entry 6x6g: Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with droperidol
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-05-28
Authors: Punetha, A., Garneau-Tsodikova, S., Tsodikov, O.V.
PDB entry 6x6h: Structure of Shiga toxin 2 with a C-terminal peptide of ribosomal P stalk proteins
Classification: TOXIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2020-05-28
Authors: Rudolph, M.J.
PDB entry 6x6i: Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT543
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.904 Å
Deposited: 2020-05-28
Authors: Punetha, A., Garneau-Tsodikova, S., Tsodikov, O.V.
PDB entry 6x6j: Cryo-EM Structure of CagX and CagY within the Helicobacter pylori PR
Classification: PROTEIN TRANSPORT
Source organism: Helicobacter pylori (strain ATCC 700392 / 26695)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-05-28
Authors: Sheedlo, M.J., Chung, J.M., Sawhney, N., Durie, C.L., Cover, T.L., Ohi, M.D., Lacy, D.B.
PDB entry 6x6k: Cryo-EM Structure of the Helicobacter pylori dCag3 OMC
Classification: PROTEIN TRANSPORT
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-05-28
Authors: Sheedlo, M.J., Chung, J.M., Sawhney, N., Durie, C.L., Cover, T.L., Ohi, M.D., Lacy, D.B.
PDB entry 6x6l: Cryo-EM Structure of CagX and CagY within the dCag3 Helicobacter pylori PR
Classification: PROTEIN TRANSPORT
Source organism: Helicobacter pylori (strain ATCC 700392 / 26695)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-05-28
Authors: Sheedlo, M.J., Chung, J.M., Sawhney, N., Durie, C.L., Cover, T.L., Ohi, M.D., Lacy, D.B.
PDB entry 6x6m: Peptide-bound structure of Marinomonas primoryensis peptide-binding domain
Classification: PROTEIN BINDING
Source organism: Marinomonas primoryensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-05-28
Authors: Guo, S., Davies, P.L.
PDB entry 6x6n: NMR structure of the putative GTPase-Activating (GAP) domain of VopE
Classification: TOXIN
Source organism: Vibrio cholerae
Experimental method: SOLUTION NMR, SOLUTION SCATTERING
Deposited: 2020-05-28
Authors: Smith, K.P., Lee, W., Tonelli, M.
PDB entry 6x6o: Crystal structure of T4 protein Spackle as determined by native SAD phasing
Classification: VIRAL PROTEIN
Source organism: Escherichia virus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2020-05-28
Authors: Shi, K., Kurniawan, F., Banerjee, S., Moeller, N.H., Aihara, H.
PDB entry 6x6p: Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2020-05-28
Authors: Herrera, N.G., Morano, N.C., Celikgil, A., Georgiev, G.I., Malonis, R., Lee, J.H., Tong, K., Vergnolle, O., Massimi, A., Yen, L.Y., Noble, A.J., Kopylov, M., Bonanno, J.B., Garrett-Thompson, S.C., Hayes, D.B., Brenowitz, M., Garforth, S.J., Eng, E.T., Lai, J.R., Almo, S.C.
PDB entry 6x6q: Peptide-bound structure of Marinomonas primoryensis peptide-binding domain
Classification: PROTEIN BINDING
Source organism: Marinomonas primoryensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2020-05-28
Authors: Guo, S., Davies, P.L.
PDB entry 6x6r: Crystal structure of C.difficile ribosyltransferase CDTa in complex with pCl-phenylthioDADMeImmA
Classification: TOXIN, TRANSFERASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2020-05-29
Authors: Pozharski, E.
PDB entry 6x6s: Cryo-EM Structure of the Helicobacter pylori OMC
Classification: PROTEIN TRANSPORT
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-05-29
Authors: Sheedlo, M.J., Chung, J.M., Sawhney, N., Durie, C.L., Cover, T.L., Ohi, M.D., Lacy, D.B.
PDB entry 6x6t: Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-05-29
Authors: Molodtsov, V., Ebright, R.H., Wang, C., Su, M.
PDB entry 6x6u: WOR5 from Pyrococcus furiosus, taurine-bound
Classification: CYTOSOLIC PROTEIN
Source organism: Pyrococcus furiosus COM1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.944 Å
Deposited: 2020-05-29
Authors: Lanzilotta, W.N., Mathew, L.G.
PDB entry 6x6v: Crystal structure of inactive enzymatic binary toxin component from Clostridium difficile in complex with NADPH
Classification: TOXIN, TRANSFERASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2020-05-29
Authors: Pozharski, E.
PDB entry 6x6w: Crystal structure of inactive enzymatic binary toxin component from Clostridium difficile
Classification: TOXIN, TRANSFERASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2020-05-29
Authors: Pozharski, E.
PDB entry 6x6x: Crystal structure of enzymatic binary toxin component from Clostridium difficile in complex with
Classification: TOXIN, TRANSFERASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2020-05-29
Authors: Pozharski, E.
PDB entry 6x6y: Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT1264
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-05-29
Authors: Punetha, A., Garneau-Tsodikova, S., Tsodikov, O.V.
PDB entry 6x6z: Rev1 Ternary Complex with dCTP and Ca2+
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x70: Rev1-DNA Binary Complex
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x71: Rev1 Mg2+-facilitated Intermediate complex with reactant dCTP and product dCMP
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x72: Rev1 Mg2+-facilitated Product Complex with two monophosphates
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x73: Rev1 Mg2+-facilitated Product Complex with one monophosphate
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x74: Rev1 Mg2+-facilitated Product Complex with no monophosphates
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x75: Rev1 Mn2+-facilitated Product Complex with second dCTP bound
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x76: Rev1 L325G Mn2+-facilitated Product Complex with second dCTP bound
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x77: Rev1 R518A Ternary Complex with dCTP and Ca2+
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2020-05-29
Authors: Weaver, T.M., Freudenthal, B.D.
PDB entry 6x78: Vaccine-elicited mouse FP-targeting neutralizing antibody vFP48.03 in complex with HIV fusion peptide (residue 512-519)
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.359 Å
Deposited: 2020-05-29
Authors: Xu, K., Kwong, P.D.
PDB entry 6x79: Prefusion SARS-CoV-2 S ectodomain trimer covalently stabilized in the closed conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-05-29
Authors: McCallum, M., Walls, A.C., Corti, D., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6x7a: Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT572
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2020-05-29
Authors: Punetha, A., Garneau-Tsodikova, S., Tsodikov, O.V.
PDB entry 6x7b: BRD4 Bromodomain 1 in complex with multi-action inhibitor SRX3212P
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.951 Å
Deposited: 2020-05-29
Authors: Vann, K.R., Kutateladze, T.G.
PDB entry 6x7c: BRD4 Bromodomain 1 in complex with multi-action inhibitor SRX3212
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-05-29
Authors: Vann, K.R., Kutateladze, T.G.
PDB entry 6x7d: BRD4 Bromodomain 1 in complex with multi-action inhibitor SF2523P
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-05-29
Authors: Vann, K.R., Kutateladze, T.G.
PDB entry 6x7e: Co-bound structure of an engineered protein trimer, TriCyt3, with delta isomerism at the hexahistidine coordination site
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9987 Å
Deposited: 2020-05-29
Authors: Tezcan, F.A., Kakkis, A.
PDB entry 6x7f: Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Classification: RIBOSOME, TRANSCRIPTION/TRANSLATION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-05-29
Authors: Molodtsov, V., Ebright, R.H., Wang, C., Su, M.
PDB entry 6x7h: Cyanovirin-N Mutation I34Y with Dimannose bound
Classification: ANTIVIRAL PROTEIN
Source organism: Nostoc ellipsosporum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2020-05-30
Authors: Fromme, R., Sharma, P., Ghirlanda, G.
PDB entry 6x7i: Structure of the C-terminal domain of BCL-XL in membrane
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR, SOLID-STATE NMR
Deposited: 2020-05-30
Authors: Yao, Y., Tian, Y., Marassi, F.M.
PDB entry 6x7j: fucose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2020-05-30
Authors: Guo, S., Davies, P.L.
PDB entry 6x7k: Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Classification: RIBOSOME,TRANSCRIPTION/TRANSLATION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-05-30
Authors: Molodtsov, V., Ebright, R.H., Wang, C., Su, M.
PDB entry 6x7l: LnmK in complex with 2-nitronate-propionyl-CoA
Classification: transferase/transferase inhibitor
Source organism: Streptomyces atroolivaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2020-05-30
Authors: Stunkard, L.M., Kick, B.J., Lohman, J.R.
PDB entry 6x7m: LnmK in complex with 2-nitronate-propionyl-oxa(dethia)-CoA
Classification: transferase/transferase inhibitor
Source organism: Streptomyces atroolivaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2020-05-30
Authors: Stunkard, L.M., Kick, B.J., Lohman, J.R.
PDB entry 6x7n: LnmK in complex with 2-nitronate-propionyl-amino(dethia)-CoA
Classification: transferase/transferase inhibitor
Source organism: Streptomyces atroolivaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2020-05-30
Authors: Stunkard, L.M., Kick, B.J., Lohman, J.R.
PDB entry 6x7o: LnmK in complex with 2-sulfonate-propionyl-CoA
Classification: transferase/transferase inhibitor
Source organism: Streptomyces atroolivaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-05-30
Authors: Stunkard, L.M., Kick, B.J., Lohman, J.R.
PDB entry 6x7p: LnmK in complex with 2-sulfonate-propionyl-oxa(dethia)-CoA
Classification: transferase/transferase inhibitor
Source organism: Streptomyces atroolivaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-05-30
Authors: Stunkard, L.M., Kick, B.J., Lohman, J.R.
PDB entry 6x7q: Chloramphenicol acetyltransferase type III in complex with chloramphenicol and acetyl-oxa(dethia)-CoA
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2020-05-30
Authors: Benjamin, A.B., Stunkard, L.M., Ling, J., Nice, J.N., Lohman, J.R.
PDB entry 6x7r: E. coli beta-ketoacyl-[acyl carrier protein] synthase III (FabH) in complex with oxa(dethia)-coenzyme A
Classification: TRANSFERASE
Source organism: Escherichia coli str. K-12 substr. DH10B
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-05-30
Authors: Benjamin, A.B., Stunkard, L.M., Ling, J., Nice, J.N., Lohman, J.R.
PDB entry 6x7t: Allose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-05-30
Authors: Guo, S., Davies, P.L.
PDB entry 6x7u: Crystal Structure of the Human Nudix Hydrolase Nudt16 in complex with FAD
Classification: Hydrolase, RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-05-30
Authors: Hamilton, K., Tong, L.
PDB entry 6x7v: Crystal Structure of the Human Nudix Hydrolase Nudt16
Classification: Hydrolase, RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-05-30
Authors: Hamilton, K., Tong, L.
PDB entry 6x7w: Vaccine-elicited mouse FP-targeting neutralizing antibody vFP49.02 in complex with HIV fusion peptide (residue 512-519)
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-05-30
Authors: Xu, K., Kwong, P.D.
PDB entry 6x7x: mannose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-05-31
Authors: Guo, S., Davies, P.L.
PDB entry 6x7y: N-acetyl-glucosamine-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-05-31
Authors: Guo, S., Davies, P.L.
PDB entry 6x7z: Inositol-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-06-01
Authors: Guo, S., Davies, P.L.
PDB entry 6x80: Structure of the Campylobacter jejuni G508A Flagellar Filament
Classification: STRUCTURAL PROTEIN
Source organism: Campylobacter jejuni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-06-01
Authors: Kreutzberger, M.A.B., Wang, F., Egelman, E.H.
PDB entry 6x81: Crystal Structure of TNFalpha with isoquinoline compound 2
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2020-06-01
Authors: Longenecker, K.L., Stoll, V.S.
PDB entry 6x82: Crystal Structure of TNFalpha with isoquinoline compound 4
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-06-01
Authors: Longenecker, K.L., Stoll, V.S.
PDB entry 6x83: Crystal Structure of TNFalpha with fragment compound 6
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2020-06-01
Authors: Longenecker, K.L., Stoll, V.S.
PDB entry 6x84: Sn-glycerol-3-phosphate binding periplasmic protein UgpB from Escherichia coli - W169S, W172S
Classification: CHAPERONE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2020-06-01
Authors: Wu, K., Zyla, D., Bardwell, J.C.A.
PDB entry 6x85: Crystal Structure of TNFalpha with indolinone compound 9
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2020-06-01
Authors: Longenecker, K.L., Stoll, V.S.
PDB entry 6x86: Crystal Structure of TNFalpha with indolinone compound 11
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2020-06-01
Authors: Longenecker, K.L., Stoll, V.S.
PDB entry 6x87: CryoEM structure of the Plasmodium berghei circumsporozoite protein in complex with inhibitory mouse antibody 3D11.
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Plasmodium berghei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-06-01
Authors: Kucharska, I., Thai, E., Rubinstein, J., Julien, J.P.
PDB entry 6x88: PDE6 chicken GAF domain
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19974 Å
Deposited: 2020-06-01
Authors: Ke, H.
PDB entry 6x89: Vigna radiata mitochondrial complex I*
Classification: MEMBRANE PROTEIN
Source organism: Vigna radiata
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-06-01
Authors: Letts, J.A., Maldonado, M., Padavannil, A., Zhou, L., Guo, F.
PDB entry 6x8a: Sucrose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.06 Å
Deposited: 2020-06-01
Authors: Guo, S., Davies, P.L.
PDB entry 6x8b: Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J6 immobile Holliday junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.899 Å
Deposited: 2020-06-01
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 6x8c: Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J1 immobile Holliday junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.098 Å
Deposited: 2020-06-01
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 6x8d: Arabinose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-06-01
Authors: Guo, S., Davies, P.L.
PDB entry 6x8e: Crystal structure of JAK2 with Compound 11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-06-01
Authors: Vajdos, F.F., Knafels, J.D.
PDB entry 6x8f: Crystal structure of TYK2 with Compound 11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-06-01
Authors: Vajdos, F.F., Knafels, J.D.
PDB entry 6x8g: Crystal structure of TYK2 with Compound 22
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2020-06-01
Authors: Vajdos, F.F., Knafels, J.D.
PDB entry 6x8h: Caspase-8 in complex with AOMK inhibitor, Ac-DW3-KE, forms tetrahedral adduct
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2020-06-01
Authors: Solania, A., Xu, J.H., Wolan, D.W.
PDB entry 6x8i: Caspase-3 in complex with ketomethylene inhibitor reveals tetrahedral adduct
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-06-01
Authors: Solania, A., Xu, J.H., Wolan, D.W.
PDB entry 6x8j: Caspase-7 in complex with ketomethylene inhibitor reveals tetrahedral adduct
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.604 Å
Deposited: 2020-06-01
Authors: Solania, A., Xu, J.H., Wolan, D.W.
PDB entry 6x8k: Caspase-3 in complex with elongated ketomethylene inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2020-06-01
Authors: Solania, A., Xu, J.H., Wolan, D.W.
PDB entry 6x8l: Caspase-7 in complex with elongated ketomethylene inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-06-01
Authors: Solania, A., Xu, J.H., Wolan, D.W.
PDB entry 6x8m: CryoEM structure of the holo-SrpI encapsulin complex from Synechococcus elongatus PCC 7942
Classification: VIRUS LIKE PARTICLE
Source organism: Synechococcus elongatus (strain PCC 7942 / FACHB-805)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2020-06-01
Authors: LaFrance, B.J., Nichols, R.J., Phillips, N.R., Oltrogge, L.M., Valentin-Alvarado, L.E., Bischoff, A.J., Savage, D.F., Nogales, E.
PDB entry 6x8n: Crystal Structure of H49A ABLE mutant
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-06-01
Authors: Polizzi, N.F.
PDB entry 6x8o: BimBH3 peptide tetramer
Classification: APOPTOSIS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2020-06-01
Authors: Robin, A.Y., Westphal, D., Uson, I., Czabotar, P.E.
PDB entry 6x8p: Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein NPND peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2020-06-01
Authors: Thai, E., Julien, J.P.
PDB entry 6x8q: Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein PAPP peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-06-01
Authors: Thai, E., Julien, J.P.
PDB entry 6x8r: Pharmacological characterisation and NMR structure of the novel mu-conotoxin SxIIIC, a potent irreversible NaV channel inhibitor
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2020-06-01
Authors: Schroeder, C.I., McMahon, K.L.
PDB entry 6x8s: Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein NAND peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-06-01
Authors: Thai, E., Julien, J.P.
PDB entry 6x8t: CryoEM structure of the apo-SrpI encapasulin complex from Synechococcus elongatus PCC 7942
Classification: VIRUS LIKE PARTICLE
Source organism: Synechococcus elongatus (strain PCC 7942 / FACHB-805)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-06-01
Authors: LaFrance, B.J., Nichols, R.J., Phillips, N.R., Oltrogge, L.M., Valentin-Alvarado, L.E., Bischoff, A.J., Savage, D.F., Nogales, E.
PDB entry 6x8u: Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein Mixed peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-06-01
Authors: Thai, E., Julien, J.P.
PDB entry 6x8w: Structure of ArrX Y138A mutant protein bound to sulfate from Chrysiogenes arsenatis
Classification: SIGNALING PROTEIN
Source organism: Chrysiogenes arsenatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.972 Å
Deposited: 2020-06-02
Authors: Maher, M.J., Poddar, N.
PDB entry 6x8x: Cu-bound structure of an engineered metal-dependent protein trimer, TriCyt1
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.505 Å
Deposited: 2020-06-02
Authors: Tezcan, F.A., Kakkis, A.
PDB entry 6x8y: Ribose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-06-02
Authors: Guo, S., Davies, P.L.
PDB entry 6x8z: Crystal structure of N-truncated human B12 chaperone CblD(C262S)-thiolato-cob(III)alamin complex (108-296)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-06-02
Authors: Mascarenhas, R., Li, Z., Koutmos, M., Banerjee, R.
PDB entry 6x90: Structure of the guanine nucleotide exchange factor Sec12 bound to the small GTPase Sar1
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2020-06-02
Authors: Joiner, A.M.N., Fromme, J.C.
PDB entry 6x91: Crystal structure of MBP-fused human APOBEC1
Classification: HYDROLASE
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2020-06-02
Authors: Wolfe, A.D., Li, S.-X., Chen, X.S.
PDB entry 6x93: Interleukin-10 signaling complex with IL-10RA and IL-10RB
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-06-02
Authors: Saxton, R.A., Tsutsumi, N., Gati, C., Garcia, K.C.
PDB entry 6x94: An orthogonal seryl-tRNA synthetase/tRNA pair for noncanonical amino acid mutagenesis in Escherichia coli
Classification: LIGASE
Source organism: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-06-02
Authors: Zambaldo, C., Koh, M., Nasertorabi, F., Han, G.W., Chatterjee, A., Stevens, R.C., Schultz, P.G.
PDB entry 6x95: 2-deoxy-glucose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2020-06-02
Authors: Guo, S., Davies, P.L.
PDB entry 6x96: Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 10A fragment antigen binding variable domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-06-02
Authors: Ozorowski, G., Cottrell, C.A., Ward, A.B.
PDB entry 6x97: Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 11A fragment antigen binding variable domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2020-06-02
Authors: Ozorowski, G., Cottrell, C.A., Ward, A.B.
PDB entry 6x98: Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 11B fragment antigen binding variable domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2020-06-02
Authors: Ozorowski, G., Cottrell, C.A., Ward, A.B.
PDB entry 6x99: Structure of proline utilization A with D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti (strain SM11)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2020-06-02
Authors: Tanner, J.J., Campbell, A.C.
PDB entry 6x9a: Structure of proline utilization A with trans-4-hydroxy-D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti (strain SM11)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2020-06-02
Authors: Tanner, J.J., Campbell, A.C.
PDB entry 6x9b: Structure of proline utilization A with cis-4-hydroxy-D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti (strain SM11)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2020-06-02
Authors: Tanner, J.J., Campbell, A.C.
PDB entry 6x9c: Structure of proline utilization A with L-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti (strain SM11)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2020-06-02
Authors: Tanner, J.J., Campbell, A.C.
PDB entry 6x9d: Structure of proline utilization A with trans-4-hydroxy-L-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti (strain SM11)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2020-06-02
Authors: Tanner, J.J., Campbell, A.C.
PDB entry 6x9f: Pseudomonas aeruginosa MurC with AZ8074
Classification: LIGASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-06-02
Authors: Horanyi, P.S., Mayclin, S.J., Durand-Reville, T.F., Lorimer, D.D., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6x9g: Structure of the malonate-bound form of ArrX from Chrysiogenes arsenatis
Classification: SIGNALING PROTEIN
Source organism: Chrysiogenes arsenatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2020-06-02
Authors: Maher, M.J., Poddar, N.
PDB entry 6x9h: Molecular mechanism and structural basis of small-molecule modulation of acid-sensing ion channel 1 (ASIC1)
Classification: TRANSPORT PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2020-06-02
Authors: Liu, Y., Ma, J., DesJarlais, R.L., Hagan, R., Rech, J., Lin, D., Liu, C., Miller, R., Schoellerman, J., Luo, J., Letavic, M., Grasberger, B., Maher, M.
PDB entry 6x9i: Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-06-02
Authors: Pathuri, S., Horton, J.R., Cheng, X.
PDB entry 6x9j: Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Inhibitor GSK3830052
Classification: TRANSFERASE/TRANSFERASE INHIBITOR/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2020-06-02
Authors: Pathuri, S., Horton, J.R., Cheng, X.
PDB entry 6x9k: Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Inhibitor GSK3685032A
Classification: TRANSFERASE/TRANSFERASE INHIBITOR/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2020-06-02
Authors: Pathuri, S., Horton, J.R., Cheng, X.
PDB entry 6x9l: Crystal Structure of Aldehyde Dehydrogenase C (AldC) mutant (C291A) from Pseudomonas syringae in complexed with NAD+ and Octanal
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2020-06-03
Authors: Lee, S.G., Jez, J.M.
PDB entry 6x9m: 3-O-methyl-glucose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-06-03
Authors: Guo, S., Davies, P.L.
PDB entry 6x9n: Pseudomonas aeruginosa MurC with AZ5595
Classification: LIGASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-06-03
Authors: Horanyi, P.S., Mayclin, S.J., Durand-Reville, T.F., Lorimer, D.D., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6x9o: High resolution cryoEM structure of huntingtin in complex with HAP40
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2020-06-03
Authors: Harding, R.J., Deme, J.C., Lea, S.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)
PDB entry 6x9p: 2-deoxyribose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-06-03
Authors: Guo, S., Davies, P.L.
PDB entry 6x9q: Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Classification: RIBOSOME,TRANSCRIPTION/TRANSLATION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2020-06-03
Authors: Molodtsov, V., Ebright, R.H., Wang, C., Su, M.
PDB entry 6x9r: HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293F cells in complex with RM20A3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-06-03
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 6x9s: HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in stable CHO cells in complex with RM20A3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-06-03
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 6x9t: HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with RM20A3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-06-03
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 6x9u: HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and partially deglycosylated by endoglycosidase H, in complex with RM20A3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-06-03
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 6x9v: HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and deglycosylated by endoglycosidase H, in complex with RM20A3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-06-03
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 6x9x: Crystal structure of Fab fragment of Anti-HCV E2 antibody (HC84.26)
Classification: ANTIVIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-06-03
Authors: Shahid, S., Mariuzza, R.A.
PDB entry 6x9y: The crystal structure of a Beta-lactamase from Escherichia coli CFT073
Classification: HYDROLASE
Source organism: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-06-03
Authors: Tan, K., Wu, R., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6x9z: De novo design of transmembrane beta-barrels
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-06-03
Authors: Bera, A.K., Vorobieva, A.A., Kang, A.S., Baker, D.
PDB entry 6xa0: Crystal structure of C-As lyase with mutation K105R with Ni(II)
Classification: OXIDOREDUCTASE
Source organism: Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NBRC 15933 / NCIMB 10081 / Henssen B9)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-06-03
Authors: Venkadesh, S., Yoshinaga, M., Kandavelu, P., Sankaran, B., Rosen, B.P.
PDB entry 6xa1: Structure of a drug-like compound stalled human translation termination complex
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-06-03
Authors: Li, W., Cate, J.
PDB entry 6xa2: Structure of the tirandamycin C-bound P450 monooxygenase TamI
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. 307-9
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2020-06-03
Authors: Newmister, S.A., Srivastava, K.R., Espinoza, R.V., Haatveit, K.C., Khatri, Y., Martini, R.M., Garcia-Borras, M., Podust, L.M., Houk, K.N., Sherman, D.H.
PDB entry 6xa3: Structure of the ligand free P450 monooxygenase TamI
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. 307-9
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2020-06-03
Authors: Newmister, S.A., Srivastava, K.R., Espinoza, R.V., Haatveit, K.C., Khatri, Y., Martini, R.M., Garcia-Borras, M., Podust, L.M., Houk, K.N., Sherman, D.H.
PDB entry 6xa4: Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW241
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-06-03
Authors: Sacco, M., Ma, C., Wang, J., Chen, Y.
PDB entry 6xa5: Trehalose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2020-06-03
Authors: Guo, S., Davies, P.L.
PDB entry 6xa6: Crystal Structure of Human Scribble PDZ3:Vangl2 Complex
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-06-04
Authors: How, J.Y., Kvansakul, M.
PDB entry 6xa7: Crystal Structure of Human Scribble PDZ2:Vangl2 complex
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-06-04
Authors: How, J.Y., Kvansakul, M.
PDB entry 6xa8: Crystal Structure of Human Scribble PDZ1:Vangl2 complex
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-06-04
Authors: How, J.Y., Kvansakul, M.
PDB entry 6xa9: SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide
Classification: HYDROLASE/SUBSTRATE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-06-04
Authors: Klemm, T., Calleja, D.J., Richardson, L.W., Lechtenberg, B.C., Komander, D.
PDB entry 6xaa: SARS CoV-2 PLpro in complex with ubiquitin propargylamide
Classification: HYDROLASE/SUBSTRATE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-06-04
Authors: Klemm, T., Calleja, D.J., Richardson, L.W., Lechtenberg, B.C., Komander, D.
PDB entry 6xab: Structure of the acetate-bound form of ArrX from Chrysiogenes arsenatis
Classification: SIGNALING PROTEIN
Source organism: Chrysiogenes arsenatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.781 Å
Deposited: 2020-06-04
Authors: Maher, M.J., Poddar, N.
PDB entry 6xac: Galactose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Classification: SUGAR BINDING PROTEIN
Source organism: Marinomonas primoryensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2020-06-04
Authors: Guo, S., Davies, P.L.
PDB entry 6xad: Structure of the formate-bound form of ArrX from Chrysiogenes arsenatis
Classification: SIGNALING PROTEIN
Source organism: Chrysiogenes arsenatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.893 Å
Deposited: 2020-06-04
Authors: Maher, M.J., Poddar, N.
PDB entry 6xae: SUBSTITUTED BENZYLOXYTRICYCLIC COMPOUNDS AS RETINOIC ACID-RELATED ORPHAN RECEPTOR GAMMA T AGONISTS
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.257 Å
Deposited: 2020-06-04
Authors: Sack, J.S.
PDB entry 6xaf: 1.9A crystal structure of the GTPase domain of Parkinson's disease-associated protein LRRK2 carrying R1398H
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.968 Å
Deposited: 2020-06-04
Authors: Hoang, Q.Q., Liao, J., Huang, X., Park, Y., Wu, C.X.
PDB entry 6xag: Apo BRAF dimer bound to 14-3-3
Classification: SIGNALING PROTEIN/Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2020-06-04
Authors: Liau, N.P.D., Hymowitz, S.G., Sudhamsu, J.
PDB entry 6xah: Structure of a Stable Interstrand DNA Crosslink Involving an dA Amino Group and an Abasic Site
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2020-06-04
Authors: Kellum Jr., A.H., Qiu, D., Voehler, M.W., Martin, W.J., Gates, K.S., Stone, M.P.
PDB entry 6xai: Crystal structure of NzeB in complex with cyclo-(L-Trp-L-Pro)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. NRRL F-5053
Experimental method: X-RAY DIFFRACTION
Resolution: 1.489 Å
Deposited: 2020-06-04
Authors: Shende, V.V., Khatri, Y., Newmister, S.A., Sanders, J.N., Lindovska, P., Yu, F., Doyon, T.J., Kim, J., Movassaghi, M., Houk, K.N., Sherman, D.H.
PDB entry 6xaj: Crystal structure of NzeB
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. NRRL F-5053
Experimental method: X-RAY DIFFRACTION
Resolution: 1.498 Å
Deposited: 2020-06-04
Authors: Shende, V.V., Khatri, Y., Newmister, S.A., Sanders, J.N., Lindovska, P., Yu, F., Doyon, T.J., Kim, J., Movassaghi, M., Houk, K.N., Sherman, D.H.
PDB entry 6xak: Crystal structure of NzeB in complex with cyclo-(L-Trp-L-Pro) and cyclo-(L-Trp-L-Trp)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. NRRL F-5053
Experimental method: X-RAY DIFFRACTION
Resolution: 1.479 Å
Deposited: 2020-06-04
Authors: Shende, V.V., Khatri, Y., Newmister, S.A., Sanders, J.N., Lindovska, P., Yu, F., Doyon, T.J., Kim, J., Movassaghi, M., Houk, K.N., Sherman, D.H.
PDB entry 6xal: Crystal structure of NzeB in complex with cyclo-(L-Trp-L-Val)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. NRRL F-5053
Experimental method: X-RAY DIFFRACTION
Resolution: 1.349 Å
Deposited: 2020-06-04
Authors: Shende, V.V., Khatri, Y., Newmister, S.A., Sanders, J.N., Lindovska, P., Yu, F., Doyon, T.J., Kim, J., Movassaghi, M., Houk, K.N., Sherman, D.H.
PDB entry 6xam: Crystal structure of NzeB in complex with cyclo-(L-Trp-L-homoalanine)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. NRRL F-5053
Experimental method: X-RAY DIFFRACTION
Resolution: 1.481 Å
Deposited: 2020-06-04
Authors: Shende, V.V., Khatri, Y., Newmister, S.A., Sanders, J.N., Lindovska, P., Yu, F., Doyon, T.J., Kim, J., Movassaghi, M., Houk, K.N., Sherman, D.H.