LiteFold/PDB huggingface dataset:
PDB entry 2z2h: NMR Structure of the IQ-modified Dodecamer CTCG[IQ]GCGCCATC
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2007-05-22
Authors: Wang, F., Elmquist, C.E., Stover, J.S., Rizzo, C.J., Stone, M.P.
PDB entry 2z2i: Crystal structure of Peptidyl-tRNA hydrolase from Mycobacterium tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2007-05-22
Authors: Selvaraj, M., Roy, S., Singh, N.S., Sangeetha, R., Varshney, U., Vijayan, M.
PDB entry 2z2j: Crystal structure of Peptidyl-tRNA hydrolase from Mycobacterium tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2007-05-22
Authors: Selvaraj, M., Roy, S., Singh, N.S., Sangeetha, R., Varshney, U., Vijayan, M.
PDB entry 2z2k: Crystal structure of Peptidyl-tRNA hydrolase from Mycobacterium tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-05-22
Authors: Selvaraj, M., Roy, S., Singh, N.S., Sangeetha, R., Varshney, U., Vijayan, M.
PDB entry 2z2l: Penicillin-Binding Protein 2X (PBP2X) from Streptococcus pneumoniae
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2007-05-23
Authors: Yamada, M., Watanabe, T., Takeuchi, Y.
PDB entry 2z2m: Cefditoren-Acylated Penicillin-Binding Protein 2X (PBP2X) from Streptococcus pneumoniae
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2007-05-23
Authors: Yamada, M., Watanabe, T., Takeuchi, Y.
PDB entry 2z2n: Crystal Structure of selenomethionine substituted virginiamycin B lyase from Staphylococcus aureus
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2007-05-25
Authors: Korczynska, M., Berghuis, A.M.
PDB entry 2z2o: Crystal Structure of apo virginiamycin B lyase from Staphylococcus aureus
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-05-25
Authors: Korczynska, M., Berghuis, A.M.
PDB entry 2z2p: Crystal Structure of catalytically inactive H270A virginiamycin B lyase from Staphylococcus aureus with Quinupristin
Classification: LYASE/ANTIBIOTIC
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2007-05-25
Authors: Korczynska, M., Berghuis, A.M.
PDB entry 2z2r: Nucleosome assembly proteins I (NAP-1, 74-365)
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2007-05-25
Authors: Park, Y.J., Luger, K.
PDB entry 2z2s: Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR
Classification: TRANSCRIPTION
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-05-26
Authors: Darst, S.A., Campbell, E.A.
PDB entry 2z2t: Crystal structure of the complex between gp41 fragment N36 and fusion inhibitor SC34EK
Classification: VIRAL PROTEIN/INHIBITOR
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-05-28
Authors: Nakamura, S., Ohkubo, T., Kobayashi, Y.
PDB entry 2z2u: Crystal structure of archaeal TYW1
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2007-05-28
Authors: Suzuki, Y., Ishitani, R., Nureki, O.
PDB entry 2z2w: Human Wee1 kinase complexed with inhibitor PF0335770
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2007-05-29
Authors: Squire, C.J., Baker, E.N.
PDB entry 2z2x: Crystal structure of mature form of Tk-subtilisin
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-05-29
Authors: Tanaka, S., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2z2y: Crystal structure of autoprocessed form of Tk-subtilisin
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2007-05-29
Authors: Tanaka, S., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2z2z: Crystal structure of unautoprocessed form of Tk-subtilisin soaked by 10mM CaCl2
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2007-05-29
Authors: Tanaka, S., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2z30: Crystal structure of complex form between mat-Tk-subtilisin and Tk-propeptide
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2007-05-29
Authors: Tanaka, S., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2z31: Crystal structure of immune receptor complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-05-30
Authors: Feng, D., Bond, C.J., Ely, L.K., Garcia, K.C.
PDB entry 2z32: Crystal structure of Keap1 complexed with Prothymosin alpha
Classification: TRANSCRIPTION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-05-31
Authors: Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2z33: Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2007-05-31
Authors: Yamane, T., Okamura, H., Ikeguchi, M., Nishimura, Y., Kidera, A.
PDB entry 2z34: Crystal structure of SpCia1/Asf1 complex with Hip1
Classification: CHAPERONE
Source organism: Schizosaccharomyces pombe; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2007-05-31
Authors: Malay, A.D., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2z35: Crystal structure of immune receptor
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-06-01
Authors: Feng, D., Bond, C.J., Ely, L.K., Garcia, K.C.
PDB entry 2z36: Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105)
Classification: OXIDOREDUCTASE
Source organism: Nonomuraea recticatena
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2007-06-02
Authors: Yasutake, Y., Fujii, Y., Fujii, T., Arisawa, A., Tamura, T.
PDB entry 2z37: Crystal structure of Brassica juncea chitinase catalytic module (Bjchi3)
Classification: HYDROLASE
Source organism: Brassica juncea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2007-06-02
Authors: Ubhayasekera, W., Berglund, G., Bergfors, T., Mowbray, S.L.
PDB entry 2z38: Crystal structure of chloride bound Brassica juncea chitinase catalytic module (Bjchi3)
Classification: HYDROLASE
Source organism: Brassica juncea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-06-02
Authors: Ubhayasekera, W., Bergfors, T., Mowbray, S.L.
PDB entry 2z39: Crystal structure of Brassica juncea chitinase catalytic module Glu234Ala mutant (Bjchi3-E234A)
Classification: HYDROLASE
Source organism: Brassica juncea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-06-02
Authors: Ubhayasekera, W., Bergfors, T., Mowbray, S.L.
PDB entry 2z3a: Crystal Structure of Bacillus Subtilis CodW, a non-canonical HslV-like peptidase with an impaired catalytic apparatus
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2007-06-03
Authors: Rho, S.H., Park, H.H., Kang, G.B., Lim, Y.J., Kang, M.S., Lim, B.K., Seong, I.S., Chung, C.H., Wang, J., Eom, S.H.
PDB entry 2z3b: Crystal Structure of Bacillus Subtilis CodW, a non-canonical HslV-like peptidase with an impaired catalytic apparatus
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-06-03
Authors: Rho, S.H., Park, H.H., Kang, G.B., Lim, Y.J., Kang, M.S., Lim, B.K., Seong, I.S., Chung, C.H., Wang, J., Eom, S.H.
PDB entry 2z3c: A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3C-Like peptidase
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: SARS coronavirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2007-06-04
Authors: Yin, J.
PDB entry 2z3d: A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3C-Like peptidase
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: SARS coronavirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-06-04
Authors: Yin, J.
PDB entry 2z3e: A Mechanistic view of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3C-Like peptidase
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: SARS coronavirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2007-06-04
Authors: Yin, J.
PDB entry 2z3f: Crystal structure of spCia1/Asf1 complexed with Cac2 peptide
Classification: CHAPERONE
Source organism: Schizosaccharomyces pombe; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-06-04
Authors: Malay, A.D., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2z3g: Crystal structure of blasticidin S deaminase (BSD)
Classification: HYDROLASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2007-06-04
Authors: Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
PDB entry 2z3h: Crystal structure of blasticidin S deaminase (BSD) complexed with deaminohydroxy blasticidin S
Classification: HYDROLASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2007-06-04
Authors: Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
PDB entry 2z3i: Crystal structure of blasticidin S deaminase (BSD) mutant E56Q complexed with substrate
Classification: HYDROLASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-06-04
Authors: Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
PDB entry 2z3j: Crystal structure of blasticidin S deaminase (BSD) R90K mutant
Classification: HYDROLASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-06-04
Authors: Teh, A.H., Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
PDB entry 2z3k: complex structure of LF-transferase and rAF
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2007-06-04
Authors: Watanabe, K., Toh, Y., Tomita, K.
PDB entry 2z3l: complex structure of LF-transferase and peptide A
Classification: TRANSFERASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2007-06-04
Authors: Watanabe, K., Toh, Y., Tomita, K.
PDB entry 2z3m: complex structure of LF-transferase and dAF
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-06-04
Authors: Watanabe, K., Toh, Y., Tomita, K.
PDB entry 2z3n: complex structure of LF-transferase and peptide B
Classification: TRANSFERASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-06-04
Authors: Watanabe, K., Toh, Y., Tomita, K.
PDB entry 2z3o: complex structure of LF-transferase and phenylalanine
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2007-06-04
Authors: Watanabe, K., Toh, Y., Tomita, K.
PDB entry 2z3p: complex structure of LF-transferase and leucine
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-06-04
Authors: Watanabe, K., Toh, Y., Tomita, K.
PDB entry 2z3q: Crystal structure of the IL-15/IL-15Ra complex
Classification: CYTOKINE/CYTOKINE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2007-06-05
Authors: Chirifu, M., Yamagata, Y., Davis, S.J., Ikemizu, S.
PDB entry 2z3r: Crystal structure of the IL-15/IL-15Ra complex
Classification: CYTOKINE/CYTOKINE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-06-05
Authors: Chirifu, M., Yamagata, Y., Davis, S.J., Ikemizu, S.
PDB entry 2z3s: NMR structure of AgTx2-MTX
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2007-06-06
Authors: Pimentel, C., M'Barrek, S., Visan, V., Grissmer, S., Sabatier, J.M., Darbon, H., Fajloun, Z.
PDB entry 2z3t: Crystal Structure of Substrate Free Cytochrome P450 StaP (CYP245A1)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. TP-A0274
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-06-06
Authors: Makino, M., Sugimoto, H., Shiro, Y., Asamizu, S., Onaka, H., Nagano, S.
PDB entry 2z3u: Crystal Structure of Chromopyrrolic Acid Bound Cytochrome P450 StaP (CYP245A1)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. TP-A0274
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2007-06-06
Authors: Makino, M., Sugimoto, H., Shiro, Y., Asamizu, S., Onaka, H., Nagano, S.
PDB entry 2z3v: Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2007-06-06
Authors: Iino, H., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2z3w: Prolyl tripeptidyl aminopeptidase mutant E636A
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-06-07
Authors: Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
PDB entry 2z3x: Structure of a Protein-DNA Complex Essential for DNA Protection in Spore of Bacillus Species
Classification: DNA BINDING PROTEIN/DNA
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-06-08
Authors: Lee, K.S., Jedrzejas, M.J.
PDB entry 2z3y: Crystal structure of Lysine-specific demethylase1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2007-06-08
Authors: Mimasu, S., Sengoku, T., Umehara, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2z3z: Prolyl tripeptidyl aminopeptidase mutant E636A complexd with an inhibitor
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2007-06-09
Authors: Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
PDB entry 2z41: Crystal Structure Analysis of the Ski2-type RNA helicase
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2007-06-12
Authors: Nakashima, T., Zhang, X., Kakuta, Y., Yao, M., Tanaka, I., Kimura, M.
PDB entry 2z42: Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1
Classification: LYASE
Source organism: Sphingomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-06-12
Authors: Ogura, K., Yamasaki, M., Hashimoto, W., Mikami, B., Murata, K.
PDB entry 2z43: Structure of a twinned crystal of RadA
Classification: RECOMBINATION
Source organism: Sulfolobus solfataricus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2007-06-12
Authors: Chen, L.T., Ko, T.P., Wang, A.H.J., Wang, T.F.
PDB entry 2z44: Crystal Structure of Selenomethionine-labeled ORF134
Classification: CHAPERONE
Source organism: Synechococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-06-12
Authors: Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
PDB entry 2z45: Crystal Structure of Zn-bound ORF134
Classification: CHAPERONE
Source organism: Synechococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2007-06-12
Authors: Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
PDB entry 2z46: Crystal Structure of Native-ORF134
Classification: CHAPERONE
Source organism: Synechococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2007-06-12
Authors: Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
PDB entry 2z47: The Y66L mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-06-13
Authors: Higuchi, Y., Komori, H.
PDB entry 2z48: Crystal Structure of Hemolytic Lectin CEL-III Complexed with GalNac
Classification: TOXIN
Source organism: Cucumaria echinata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-06-13
Authors: Hatakeyama, T., Unno, H., Eto, S., Hidemura, H., Uchida, T., Kouzuma, Y.
PDB entry 2z49: Crystal Structure of Hemolytic Lectin CEL-III Complexed with methyl-alpha-D-galactopylanoside
Classification: TOXIN
Source organism: Cucumaria echinata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2007-06-13
Authors: Hatakeyama, T., Unno, H., Eto, S., Hidemura, H., Uchida, T., Kouzuma, Y.
PDB entry 2z4b: Estrogen receptor beta ligand-binding domain complexed to a benzopyran ligand
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2007-06-14
Authors: Wang, Y.
PDB entry 2z4d: NMR Structures of Yeast Proteasome Component Rpn13
Classification: NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: SOLUTION NMR
Deposited: 2007-06-15
Authors: Zhang, N., Walters, K.J.
PDB entry 2z4e: Crystal Structure of D-Dimer from Human Fibrin Complexed with Gly-His-Arg-Pro-Tyr-amide
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-06-16
Authors: Doolittle, R.F., Pandi, L.
PDB entry 2z4f: Solution structure of the Discoidin Domain of DDR2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-06-16
Authors: Ichikawa, O., Osawa, M., Nishida, N., Goshima, N., Nomura, N., Shimada, I.
PDB entry 2z4g: Histidinol Phosphate Phosphatase from Thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-06-17
Authors: Omi, R.
PDB entry 2z4h: Crystal structure of the Cpx pathway activator NlpE from Escherichia coli
Classification: SIGNALING PROTEIN ACTIVATOR
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2007-06-18
Authors: Hirano, Y., Hossain, M.M., Takeda, K., Tokuda, H., Miki, K.
PDB entry 2z4i: Crystal structure of the Cpx pathway activator NlpE from Escherichia coli
Classification: SIGNALING PROTEIN ACTIVATOR
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2007-06-18
Authors: Hirano, Y., Hossain, M.M., Takeda, K., Tokuda, H., Miki, K.
PDB entry 2z4j: Crystal structure of AR LBD with SHP peptide NR Box 2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2007-06-19
Authors: Jouravel, N., Fletterick, R.J.
PDB entry 2z4o: Wild Type HIV-1 Protease with potent Antiviral inhibitor GRL-98065
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-06-20
Authors: Wang, Y.F., Tie, Y., Boross, P.I., Tozser, J., Ghosh, A.K., Harrison, R.W., Weber, I.T.
PDB entry 2z4p: Crystal structure of FFRP-DM1
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2007-06-21
Authors: Yamada, M., Koike, H., Kudo, N., Suzuki, M.
PDB entry 2z4q: Crystal structure of a murine antibody FAB 528
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-06-22
Authors: Nakanishi, T., Tsumoto, K., Asano, R., Kondo, H., Kumagai, I.
PDB entry 2z4r: Crystal structure of domain III from the Thermotoga maritima replication initiation protein DnaA
Classification: DNA BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2007-06-25
Authors: Fujikawa, N., Ozaki, S., Kagawa, W., Park, S.-Y., Katayama, T., Kurumizaka, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2z4s: Crystal structure of domain III from the Thermotoga maritima replication initiation protein DnaA
Classification: DNA BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2007-06-25
Authors: Fujikawa, N., Ozaki, S., Kagawa, W., Park, S.-Y., Katayama, T., Kurumizaka, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2z4t: Crystal Structure of Vibrionaceae Photobacterium sp. JT-ISH-224 2,6-sialyltransferase in a Ternary Complex with Donor Product CMP and Accepter Substrate Lactose
Classification: TRANSFERASE
Source organism: Photobacterium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-06-25
Authors: Kakuta, Y., Okino, N., Kajiwara, H., Ichikawa, M., Takakura, Y., Ito, M., Yamamoto, T.
PDB entry 2z4u: Crystal structure of wild type PD-L4 from Phytolacca dioica leaves
Classification: HYDROLASE
Source organism: Phytolacca dioica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2007-06-26
Authors: Ruggiero, A., Berisio, R.
PDB entry 2z4v: S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and GGPP (inhibitory site)
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2007-06-26
Authors: Chen, C.K.-M., Guo, R.T., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.
PDB entry 2z4w: S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-749
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2007-06-26
Authors: Chen, C.K.-M., Guo, R.T., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.
PDB entry 2z4x: S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-252 (P21)
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-06-26
Authors: Guo, R.T., Chen, C.K.-M., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.
PDB entry 2z4y: S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-252
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-06-26
Authors: Chen, C.K.-M., Guo, R.T., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.
PDB entry 2z4z: S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-sc01
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2007-06-26
Authors: Chen, C.K.-M., Guo, R.T., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.
PDB entry 2z50: S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with BPH-28
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2007-06-26
Authors: Guo, R.T., Chen, C.K.-M., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.
PDB entry 2z51: Crystal structure of Arabidopsis CnfU involved in iron-sulfur cluster biosynthesis
Classification: METAL TRANSPORT
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2007-06-26
Authors: Yabe, T., Yamashita, E., Nakai, M.
PDB entry 2z52: S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-23
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2007-06-26
Authors: Guo, R.T., Chen, C.K.-M., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.
PDB entry 2z53: Crystal structure of the S211A mutant of the ribosome inactivating protein PDL4 from P. dioica leaves
Classification: HYDROLASE
Source organism: Phytolacca dioica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2007-06-27
Authors: Berisio, R., Ruggiero, A.
PDB entry 2z54: The Influence of I47A Mutation on Reduced Susceptibility to the Protease Inhibitor Lopinavir
Classification: HYDROLASE
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2007-06-28
Authors: Brynda, J., Klara, S., Kozisek, M., Lepsik, M., Machala, L., Konvalinka, J.
PDB entry 2z55: Bacterioruberin in the trimeric structure of archaerhodopsin-2
Classification: TRANSPORT PROTEIN
Source organism: Halobacterium sp. AUS-2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-06-28
Authors: Kouyama, T., Yoshimura, K.
PDB entry 2z56: Crystal structure of G56S-propeptide:S324A-subtilisin complex
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-06-29
Authors: Pulido, M.A., Tanaka, S., Sringiew, C., You, D.J., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2z57: Crystal structure of G56E-propeptide:S324A-subtilisin complex
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-06-29
Authors: Pulido, M.A., Tanaka, S., Sringiew, C., You, D.J., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2z58: Crystal structure of G56W-propeptide:S324A-subtilisin complex
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2007-06-29
Authors: Pulido, M.A., Tanaka, S., Sringiew, C., You, D.J., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2z59: Complex Structures of Mouse Rpn13 (22-130aa) and ubiquitin
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2007-07-01
Authors: Chen, X., Schreiner, P., Groll, M., Walters, K.J.
PDB entry 2z5b: Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2007-07-03
Authors: Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
PDB entry 2z5c: Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly
Classification: CHAPERONE/HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2007-07-03
Authors: Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
PDB entry 2z5d: Human ubiquitin-conjugating enzyme E2 H
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-07-06
Authors: Bochkarev, A., Cui, H., Walker, J.R., Newman, E.M., Mackenzie, F., Battaile, K.P., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)
PDB entry 2z5e: Crystal Structure of Proteasome Assembling Chaperone 3
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-07-06
Authors: Okamoto, K., Kurimoto, E., Sakata, E., Suzuki, A., Yamane, T., Hirano, Y., Murata, S., Tanaka, K., Kato, K.
PDB entry 2z5f: Human sulfotransferase Sult1b1 in complex with PAP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-07-07
Authors: Dombrovski, L., Pegasova, T., Wu, H., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Sundstrom, M., Plotnikov, A.N., Bochkarev, A., Structural Genomics Consortium (SGC)
PDB entry 2z5g: Crystal structure of T1 lipase F16L mutant
Classification: HYDROLASE
Source organism: Geobacillus zalihae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-07-08
Authors: Matsumura, H., Yamamoto, T., Inoue, T., Kai, Y.
PDB entry 2z5h: Crystal structure of the head-to-tail junction of tropomyosin complexed with a fragment of TnT
Classification: CONTRACTILE PROTEIN
Source organism: Gallus gallus; Oryctolagus cuniculus; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2007-07-12
Authors: Murakami, K., Nozawa, K., Tomii, K., Kudou, N., Igarashi, N., Shirakihara, Y., Wakatsuki, S., Stewart, M., Yasunaga, T., Wakabayashi, T.
PDB entry 2z5i: Crystal structure of the head-to-tail junction of tropomyosin
Classification: CONTRACTILE PROTEIN
Source organism: Oryctolagus cuniculus; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-07-12
Authors: Murakami, K., Nozawa, K., Tomii, K., Kudou, N., Igarashi, N., Shirakihara, Y., Wakatsuki, S., Stewart, M., Yasunaga, T., Wakabayashi, T.
PDB entry 2z5j: Free Transportin 1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2007-07-13
Authors: Imasaki, T., Shimizu, T., Hashimoto, H., Hidaka, Y., Yamada, M., Sato, M.
PDB entry 2z5k: Complex of Transportin 1 with TAP NLS
Classification: TRANSPORT PROTEIN/RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2007-07-14
Authors: Imasaki, T., Shimizu, T., Hashimoto, H., Hidaka, Y., Yamada, M., Kose, S., Imamoto, N., Sato, M.
PDB entry 2z5l: The first ketoreductase of the tylosin PKS
Classification: TRANSFERASE
Source organism: Streptomyces fradiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2007-07-14
Authors: Keatinge-Clay, A.T., Stroud, R.M.
PDB entry 2z5m: Complex of Transportin 1 with TAP NLS, crystal form 2
Classification: TRANSPORT PROTEIN/RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2007-07-14
Authors: Imasaki, T., Shimizu, T., Hashimoto, H., Hidaka, Y., Kose, S., Imamoto, N., Yamada, M., Sato, M.
PDB entry 2z5n: Complex of Transportin 1 with hnRNP D NLS
Classification: TRANSPORT PROTEIN/RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2007-07-14
Authors: Imasaki, T., Shimizu, T., Hashimoto, H., Hidaka, Y., Kose, S., Imamoto, N., Yamada, M., Sato, M.
PDB entry 2z5o: Complex of Transportin 1 with JKTBP NLS
Classification: TRANSPORT PROTEIN/RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2007-07-14
Authors: Imasaki, T., Shimizu, T., Hashimoto, H., Hidaka, Y., Kose, S., Imamoto, N., Yamada, M., Sato, M.
PDB entry 2z5p: Apo-Fr with low content of Pd ions
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2007-07-16
Authors: Ueno, T., Hirata, K., Abe, M., Suzuki, M., Abe, S., Shimizu, N., Yamamoto, M., Takata, M., Watanabe, Y.
PDB entry 2z5q: Apo-Fr with intermediate content of Pd ion
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-07-16
Authors: Ueno, T., Hirata, K., Abe, M., Suzuki, M., Abe, S., Shimizu, N., Yamamoto, M., Takata, M., Watanabe, Y.
PDB entry 2z5r: Apo-Fr with high content of Pd ions
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-07-16
Authors: Ueno, T., Hirata, K., Abe, M., Suzuki, M., Abe, S., Shimizu, N., Yamamoto, M., Takata, M., Watanabe, Y.
PDB entry 2z5s: Molecular basis for the inhibition of p53 by Mdmx
Classification: CELL CYCLE
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-07-17
Authors: Popowicz, G.M., Czarna, A., Rothweiler, U., Szwagierczak, A., Holak, T.A.
PDB entry 2z5t: Molecular basis for the inhibition of p53 by Mdmx
Classification: CELL CYCLE
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-07-17
Authors: Popowicz, G.M., Czarna, A., Rothweiler, U., Szwagierczak, A., Holak, T.A.
PDB entry 2z5u: Crystal structure of Lysine-specific histone demethylase 1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2007-07-17
Authors: Mimasu, S., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2z5v: Solution structure of the TIR domain of human MyD88
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-07-19
Authors: Ohnishi, H., Tochio, H., Hiroaki, H., Kondo, N., Kato, Z., Shirakawa, M.
PDB entry 2z5w: tBclA, a recombinant spore surface protein from Bacillus anthracis
Classification: STRUCTURAL PROTEIN
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2007-07-20
Authors: Streltsov, V.A.
PDB entry 2z5x: Crystal Structure of Human Monoamine Oxidase A with Harmine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-07-20
Authors: Son, S.Y., Ma, J., Yoshimura, M., Tsukihara, T.
PDB entry 2z5y: Crystal Structure of Human Monoamine Oxidase A (G110A) with Harmine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2007-07-20
Authors: Son, S.Y., Ma, J., Yoshimura, M., Tsukihara, T.
PDB entry 2z5z: Crystal structure of the complex of buffalo Lactoperoxidase with fluoride ion at 3.5A resolution
Classification: OXIDOREDUCTASE
Source organism: Bubalus bubalis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2007-07-20
Authors: Sheikh, I.A., Jain, R., Singh, N., Sharma, S., Bhushan, A., Kaur, P., Srinivasan, A., Singh, T.P.
PDB entry 2z60: Crystal Structure of the T315I Mutant of Abl kinase bound with PPY-A
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2007-07-21
Authors: Zhou, T., Dalgarno, D., Zhu, X.
PDB entry 2z61: Crystal structure of MJ0684 from Methanococcus jannaschii reveals its similarity in the active site to kynurenine aminotransferases
Classification: TRANSFERASE
Source organism: Methanococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-07-21
Authors: Yang, J.K.
PDB entry 2z62: Crystal structure of the TV3 hybrid of human TLR4 and hagfish VLRB.61
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-07-22
Authors: Lee, J.-O., Kim, H.M., Park, B.S.
PDB entry 2z63: Crystal structure of the TV8 hybrid of human TLR4 and hagfish VLRB.61
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-07-22
Authors: Kim, H.M., Park, B.S., Lee, J.-O.
PDB entry 2z64: Crystal structure of mouse TLR4 and mouse MD-2 complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2007-07-22
Authors: Lee, J.-O., Kim, H.M., Park, B.S.
PDB entry 2z65: Crystal structure of the human TLR4 TV3 hybrid-MD-2-Eritoran complex
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-07-22
Authors: Lee, J.-O., Kim, H.M., Park, B.S.
PDB entry 2z66: Crystal structure of the VT3 hybrid of human TLR4 and hagfish VLRB.61
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-07-22
Authors: Lee, J.-O., Kim, H.M., Park, B.S.
PDB entry 2z67: Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) selenium transferase (SepSecS)
Classification: TRANSFERASE
Source organism: Methanococcus maripaludis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-07-23
Authors: Araiso, Y., Ishitani, R., Pailouer, S., Oshikane, H., Domae, N., Soll, D., Nureki, O.
PDB entry 2z68: Crystal Structure Of An Artificial Metalloprotein: Cr[N-salicylidene-4-amino-3-hydroxyhydrocinnamic acid]/Wild Type Heme oxygenase
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2007-07-24
Authors: Yokoi, N., Unno, M., Ueno, T., Ikeda-Saito, M., Watanabe, Y.
PDB entry 2z69: Crystal Structure of the sensor domain of the transcriptional regulator DNR from Pseudomonas aeruginosa
Classification: TRANSCRIPTION REGULATOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-07-24
Authors: Giardina, G., Johnson, K.A., Di Matteo, A.
PDB entry 2z6a: S-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine Methylation
Classification: TRANSFERASE/DNA
Source organism: Haemophilus parahaemolyticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2007-07-25
Authors: Shieh, F.K.
PDB entry 2z6b: Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin
Classification: HYDROLASE/STRUCTURAL PROTEIN
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2007-07-28
Authors: Koshiyama, T., Yokoi, N., Ueno, T., Kanamaru, S., Nagano, S., Shiro, Y., Arisaka, F., Watanabe, Y.
PDB entry 2z6c: Crystal structure of LOV1 domain of phototropin1 from Arabidopsis thaliana
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-07-29
Authors: Nakasako, M., Matsuoka, D., Tokutomi, S.
PDB entry 2z6d: Crystal structure of LOV1 domain of phototropin2 from Arabidopsis thaliana
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-07-29
Authors: Nakasako, M., Matsuoka, D., Tokutomi, S.
PDB entry 2z6e: Crystal Structure of Human DAAM1 FH2
Classification: PROTEIN FIBRIL REGULATOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2007-07-31
Authors: Yamashita, M., Higashi, T., Sato, Y., Shirakawa, R., Kita, T., Horiuchi, H., Fukai, S., Nureki, O.
PDB entry 2z6f: Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme
Classification: HEME BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-07-31
Authors: Tanaka, Y., Suenaga, A., Tsumoto, K.
PDB entry 2z6g: Crystal Structure of a Full-Length Zebrafish Beta-Catenin
Classification: CELL ADHESION
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2007-08-01
Authors: Xing, Y., Takemaru, K., Liu, J., Zheng, J., Moon, R., Xu, W.
PDB entry 2z6h: Crystal Structure of Beta-Catenin Armadillo Repeat Region and Its C-Terminal domain
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-08-01
Authors: Xing, Y., Takemaru, K., Liu, J., Zheng, J., Moon, R., Xu, W.
PDB entry 2z6i: Crystal Structure of S. pneumoniae Enoyl-Acyl Carrier Protein Reductase (FabK)
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-08-01
Authors: Saito, J., Yamada, M., Watanabe, T., Takeuchi, Y.
PDB entry 2z6j: Crystal Structure of S. pneumoniae Enoyl-Acyl Carrier Protein Reductase (FabK) in Complex with an Inhibitor
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-08-01
Authors: Saito, J., Yamada, M., Watanabe, T., Takeuchi, Y.
PDB entry 2z6k: Crystal structure of full-length human RPA14/32 heterodimer
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2007-08-03
Authors: Deng, X., Habel, J.E., Kabaleeswaran, V., Borgstahl, G.E.
PDB entry 2z6m: Crystal structure of Human Ferritin H8 as biotemplate for noble metal nanoparticle synthesis
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2007-08-04
Authors: Di Costanzo, L., Christianson, D.W.
PDB entry 2z6n: Crystal Structure of Carbonmonoxy Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea
Classification: TRANSPORT PROTEIN
Source organism: Dipsochelys dussumieri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2007-08-04
Authors: Kuwada, T., Hasegawa, T., Sato, I., Ishikawa, K., Shishikura, F.
PDB entry 2z6o: Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-08-06
Authors: Mizushima , T., Tatsumi, K., Ozaki, Y., Kawakami, T., Suzuki, A., Ogasahara, K., Komatsu, M., Kominami, E., Tanaka, K., Yamane, T.
PDB entry 2z6p: Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-08-06
Authors: Mizushima , T., Tatsumi, K., Ozaki, Y., Kawakami, T., Suzuki, A., Ogasahara, K., Komatsu, M., Kominami, E., Tanaka, K., Yamane, T.
PDB entry 2z6q: Ternary structure of Arg165Ala M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy
Classification: TRANSFERASE/DNA
Source organism: Haemophilus parahaemolyticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2007-08-08
Authors: Shieh, F.K.
PDB entry 2z6r: Crystal structure of Lys49 to Arg mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2007-08-08
Authors: Mizutani, H., Matsuura, Y., Krishna Swamy, B.S., Simanshu, D.K., Murthy, M.R.N., Kunishima, N.
PDB entry 2z6s: Crystal structure of the oxy myoglobin free from X-ray-induced photoreduction
Classification: OXYGEN BINDING
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2007-08-08
Authors: Unno, M., Kusama, S., Chen, H., Shaik, S., Ikeda-Saito, M.
PDB entry 2z6t: Crystal structure of the ferric peroxo myoglobin
Classification: OXYGEN BINDING
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2007-08-08
Authors: Unno, M., Kusama, S., Chen, H., Shaik, S., Ikeda-Saito, M.
PDB entry 2z6u: Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy
Classification: TRANSFERASE/DNA
Source organism: Haemophilus parahaemolyticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2007-08-09
Authors: Shieh, F.K.
PDB entry 2z6v: Crystal structure of sulfotransferase STF9 from Mycobacterium avium
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium avium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2007-08-09
Authors: Hassain, M.M., Moriizumi, Y., Tanaka, S., Kimura, M., Kakuta, Y.
PDB entry 2z6w: Crystal structure of human cyclophilin D in complex with cyclosporin A
Classification: ISOMERASE/IMMUNOSUPPRESSANT
Source organism: HOMO SAPIENS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 0.96 Å
Deposited: 2007-08-09
Authors: Kajitani, K., Fujihashi, M., Kobayashi, Y., Shimizu, S., Tsujimoto, Y., Miki, K.
PDB entry 2z6x: Crystal structure of 22G, the wild-type protein of the photoswitchable GFP-like protein Dronpa
Classification: FLUORESCENT PROTEIN
Source organism: Pectiniidae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-08-09
Authors: Kikuchi, A., Jeyakanthan, J., Taka, J., Shiro, Y., Mizuno, H., Miyawaki, A.
PDB entry 2z6y: Crystal structure of a photoswitchable GFP-like protein Dronpa in the bright-state
Classification: FLUORESCENT PROTEIN
Source organism: Echinophyllia sp. SC22
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-08-09
Authors: Kikuchi, A., Jeyakanthan, J., Taka, J., Shiro, Y., Mizuno, H., Miyawaki, A.
PDB entry 2z6z: Crystal structure of a photoswitchable GFP-like protein Dronpa in the bright-state
Classification: FLUORESCENT PROTEIN
Source organism: Echinophyllia sp. SC22
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-08-09
Authors: Kikuchi, A., Jeyakanthan, J., Taka, J., Shiro, Y., Mizuno, H., Miyawaki, A.
PDB entry 2z70: E.coli RNase 1 in complex with d(CGCGATCGCG)
Classification: HYDROLASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-08-09
Authors: Martinez-Rodriguez, S., Loris, R., Messens, J.
PDB entry 2z71: Structure of truncated mutant CYS1GLY of penicillin V acylase from bacillus sphaericus co-crystallized with penicillin V
Classification: HYDROLASE
Source organism: Bacillus sphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2007-08-10
Authors: Pathak, M.C., Brannigan, J., Dodson, G.G., Suresh, C.G.
PDB entry 2z72: New Structure Of Cold-Active Protein Tyrosine Phosphatase At 1.1 Angstrom
Classification: HYDROLASE
Source organism: Shewanella sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2007-08-10
Authors: Tsuruta, H., Mikami, B., Yamamoto, C., Yamagata, H.
PDB entry 2z73: Crystal structure of squid rhodopsin
Classification: MEMBRANE PROTEIN
Source organism: Todarodes pacificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-08-13
Authors: Murakami, M., Kouyama, T.
PDB entry 2z74: T. tengcongensis glmS ribozyme bound to glucose-6-phosphate
Classification: DNA, RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-08-15
Authors: Klein, D.J., Wilkinson, S.R., Been, M.D., Ferre-D'Amare, A.R.