LiteFold/PDB huggingface dataset:
PDB entry 9rkx: Atomic model of Cx43 gap junction channel rigid-body fitted to the in situ structure of the human Cx43 gap junction
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 14 Å
Deposited: 2025-06-15
Authors: Eshriew, E., Kumpula, E.-P., Teli, S., Huiskonen, J.T.
PDB entry 9rl1: APH(2'')-IVa with an inhibitor
Classification: ANTIBIOTIC
Source organism: Enterococcus casseliflavus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-16
Authors: Guichou, J.F., Gelin, M., Tomaszczyk, M., Kowalewski, J., Lionne, C.
PDB entry 9rl3: 13S proteasome precursor complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-06-16
Authors: Mark, E., Ramos, P.C., Nunes, M.M., Dohmen, R.J., Wendler, P.
PDB entry 9rl4: Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6
Classification: GENE REGULATION
Source organism: Aequorea victoria; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-16
Authors: Vecchia, L., Weiss, J., Cavadini, S., Kempf, G., Kater, L., Pathare, G., Thoma, N.H.
PDB entry 9rl5: a5b3 GABAAR bound to Topiramate, GABA, and Mb25 in a desensitized state in saposin nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-16
Authors: Cowgirl, J., Lindahl, E., Howard, R.J.
PDB entry 9rla: 13S+Beta1 proteasome precursor complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-06-16
Authors: Mark, E., Ramos, P.C., Nunes, M.M., Dohmen, R.J., Wendler, P.
PDB entry 9rlc: LolCDE complex with Lpp lipoprotein
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rld: LolCDE complex with Lpp lipoprotein
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rle: LolCDE complex with Pal lipoprotein
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rlf: LolCDE complex with Pal lipoprotein
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rlg: LolCDE complex with LolB lipoprotein
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rlh: LolCDE complex with del 9-15 LolB lipoprotein
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rli: LolCDEdelta(235-252) complex with Pal lipoprotein
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rlj: LolCDE with bound ATPgammaS
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rlk: LolCDE(delta 235-252) complex with Pal lipoprotein
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-06-16
Authors: Symmons, M.F., Szewczyk, P., Greene, N.P., Hardwick, S.W., Koronakis, V.
PDB entry 9rll: Sub-atomic resolution (0.95 A) XFEL structure of as-isolated copper nitrite reductase from Achromobacter cycloclastes determined by serial femtosecond rotation crystallography (SF-ROX)
Classification: OXIDOREDUCTASE
Source organism: Achromobacter cycloclastes
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2025-06-16
Authors: Rose, S.L., Antonyuk, S.V., Ferroni, F.M., Sugimoto, H., Yamashita, K., Hirata, K., Ago, H., Ueno, G., Murakami, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 9rlm: HUMAN CYCLOPHILIN D IN COMPLEX WITH INHIBITOR
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-06-17
Authors: Graedler, U.
PDB entry 9rlo: PARP15 catalytic domain in complex with OUL250
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-06-17
Authors: Alaviuhkola, J., Maksimainen, M.M., Lehtio, L.
PDB entry 9rlp: PARP15 catalytic domain in complex with OUL310
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-06-17
Authors: Alaviuhkola, J., Maksimainen, M.M., Lehtio, L.
PDB entry 9rlq: PARP15 catalytic domain in complex with OUL312
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-06-17
Authors: Alaviuhkola, J., Maksimainen, M.M., Lehtio, L.
PDB entry 9rlr: PARP15 catalytic domain in complex with OUL499
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-06-17
Authors: Alaviuhkola, J., Lehtio, L.
PDB entry 9rls: PARP10 catalytic domain in complex with OUL499
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-06-17
Authors: Alaviuhkola, J., Lehtio, L.
PDB entry 9rlt: dimerised 13S-13S+Beta5 proteasome precursor complexes
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-06-17
Authors: Mark, E., Ramos, P.C., Nunes, M.M., Dohmen, R.J., Wendler, P.
PDB entry 9rlz: 15S proteasome precursor complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-06-17
Authors: Mark, E., Ramos, P.C., Nunes, M.M., Dohmen, R.J., Wendler, P.
PDB entry 9rm0: 13S+Beta5+Beta6 proteasome precursor complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-06-17
Authors: Mark, E., Ramos, P.C., Nunes, M.M., Dohmen, R.J., Wendler, P.
PDB entry 9rm1: 13S+Beta1+Beta5 proteasome precursor complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.11 Å
Deposited: 2025-06-17
Authors: Mark, E., Ramos, P.C., Nunes, M.M., Dohmen, R.J., Wendler, P.
PDB entry 9rm2: BKPyV VP1 IN COMPLEX WITH 319C07-FAB
Classification: VIRAL PROTEIN
Source organism: Betapolyomavirus hominis; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-06-17
Authors: Schmitt, S., Hillenbrand, M.
PDB entry 9rm3: Crystal structure of human CD22 Ig domains 1-3 in complex with modified sialoside 17
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.857 Å
Deposited: 2025-06-17
Authors: Ereno-Orbea, J., Sicard, T., Julien, J.-P.
PDB entry 9rm4: Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0015373
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-06-17
Authors: Ni, X., Marples, P.G., Godoy, A.S., Koekemoer, L., Aschenbrenner, J.C., Balcomb, B.H., Fairhead, M., Lithgo, R.M., Lee, A., Kenton, N., Thompson, W., Tomlinson, C.W.E., Wild, C., Winokan, M., Williams, E.P., Fearon, D., von Delft, F.
PDB entry 9rm5: Hexameric AAV2 Rep40-ssDNA (ITR) complex in presence of ATPyS
Classification: DNA BINDING PROTEIN
Source organism: adeno-associated virus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2025-06-17
Authors: Rouse, S.L., Bubeck, D., Barritt, J.D., Xu, V., Wake, M.
PDB entry 9rm6: Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0027808
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-06-17
Authors: Ni, X., Marples, P.G., Godoy, A.S., Koekemoer, L., Aschenbrenner, J.C., Balcomb, B.H., Fairhead, M., Lithgo, R.M., Lee, A., Kenton, N., Thompson, W., Tomlinson, C.W.E., Wild, C., Winokan, M., Williams, E.P., Fearon, D., von Delft, F.
PDB entry 9rm7: Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0036543
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-06-17
Authors: Ni, X., Marples, P.G., Godoy, A.S., Koekemoer, L., Aschenbrenner, J.C., Balcomb, B.H., Fairhead, M., Lithgo, R.M., Lee, A., Kenton, N., Thompson, W., Tomlinson, C.W.E., Wild, C., Winokan, M., Williams, E.P., Fearon, D., von Delft, F.
PDB entry 9rm9: Cryo-EM structure of alphaM/beta2 headpiece complex without alphaM I-domain - the consensus map from alphaM/beta2:C3d-anti-CR3-Nb headpiece complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-06-18
Authors: Fruergaard, M.U., Andersen, G.R.
PDB entry 9rma: Cryo-EM structure of alphaM I-domain:C3d-anti-CR3-Nb complex focused refinement from the alphaM/beta2:C3d-anti-CR3-Nb headpiece complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2025-06-18
Authors: Fruergaard, M.U., Andersen, G.R.
PDB entry 9rmc: Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 1
Classification: GENE REGULATION
Source organism: Aequorea victoria; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-06-18
Authors: Vecchia, L., Weiss, J., Cavadini, S., Kempf, G., Kater, L., Pathare, G., Thoma, N.H.
PDB entry 9rme: Hybrid NMR/Xray structure of SARS-CoV2 macrodomain (nsp3b) in complex with the sulfamoyl derivative of GS-441524
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: SOLUTION NMR
Deposited: 2025-06-18
Authors: Mineev, K.S., Krishnathas, R., Gande, S.L., Linhard, V., Tsika, A., Sideras-Bisdekis, C., Fourkiotis, N., Lennartz, F., Spyroulias, G., Weiss, M., Sreeramulu, S., Schwalbe, H.
PDB entry 9rmi: Cryo-EM structure of the CorM filament in the presence of CorR from cyanobacterium Anabaena sp. PCC 7120
Classification: STRUCTURAL PROTEIN
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2025-06-18
Authors: Springstein, B.L., Javoor, M.G., Megrian, D., Hajdu, R., Hanke, D.M., Schur, F.K.M., Loose, M.
PDB entry 9rmm: Crystal structure of outer membrane SilC
Classification: MEMBRANE PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-06-18
Authors: Lithgo, R.M., Carr, S.B., Quigley, A.M., Scott, D.J.
PDB entry 9rmr: Crystal structure of RXR alpha LBD bound to a synthetic agonist FN558 and a coactivator fragment
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-06-18
Authors: Morozov, V., Nawa, F., Merk, D.
PDB entry 9rms: GluA4 in complex with TARP-2, Resting II state, structure of TMD/LBD domains
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-06-18
Authors: Vega-Gutierrez, C., Herguedas, B.
PDB entry 9rmu: SIVtal integrase in complex with RNA stem-loop (focused refinement of the filament repeat unit)
Classification: VIRAL PROTEIN
Source organism: Simian immunodeficiency virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-06-18
Authors: Singer, M.R., Cherepanov, P.
PDB entry 9rmw: GluA4 in complex with TARP-2, open state, structure of TMD/LBD domains
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-18
Authors: Vega-Gutierrez, C., Herguedas, B.
PDB entry 9rmx: CryoEM reconstruction of integrase filament at the lumen of native HIV-1 cores (box size 34.2 nm)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.63 Å
Deposited: 2025-06-19
Authors: Cherepanov, P., Singer, M.R., Hope, J., Zhang, P.
PDB entry 9rn0: Sub-atomic resolution (0.95 A) XFEL structure of nitrite-bound copper nitrite reductase from Achromobacter cycloclastes determined by serial femtosecond rotation crystallography (SF-ROX) at 100 K
Classification: OXIDOREDUCTASE
Source organism: Achromobacter cycloclastes
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2025-06-19
Authors: Rose, S.L., Antonyuk, S.V., Ferroni, F.M., Sugimoto, H., Yamashita, K., Hirata, K., Ago, H., Ueno, G., Murakami, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 9rn1: Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2
Classification: GENE REGULATION
Source organism: Aequorea victoria; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2025-06-19
Authors: Domjan, D., Weiss, J., Cavadini, S., Veccia, L., Kempf, G., Kater, L., Pathare, G., Thoma, N.H.
PDB entry 9rn2: Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2
Classification: GENE REGULATION
Source organism: Aequorea victoria; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-06-19
Authors: Vecchia, L., Weiss, J., Cavadini, S., Kempf, G., Kater, L., Pathare, G., Thoma, N.H.
PDB entry 9rn4: GluA4 in complex with TARP-2, desensitized state, structure of TMD/LBD domains
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-19
Authors: Vega-Gutierrez, C., Herguedas, B.
PDB entry 9rn6: Crystal structure of a protein mimic of SARS-CoV-2 spike's HR1 domain in complex with two nanobodies bound to different epitopes
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-06-19
Authors: Camara-Artigas, A., Conejero-Lara, F., Polo-Megias, D., Salinas-Garcia, M.C., Gavira, J.A.
PDB entry 9rn7: GluA4 in complex with TARP-2, Desensitized state, structure of TMD domain
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-19
Authors: Vega-Gutierrez, C., Herguedas, B.
PDB entry 9rn8: Crystal structure of the photosensory core module (PCM) of a cyano-phenylalanine mutant oCNF205 of the bathy phytochrome Agp2 from Agrobacterium fabrum in the Pfr state.
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-06-19
Authors: Sauthof, L., Ebrahim, M., Scheerer, P.
PDB entry 9rnh: GluA4 in complex with TARP-2, Resting II state, structure of TMD domain
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-19
Authors: Vega-Gutierrez, C., Herguedas, B.
PDB entry 9rnt: RIBONUCLEASE T1 WITH FREE RECOGNITION AND CATALYTIC SITE: CRYSTAL STRUCTURE ANALYSIS AT 1.5 ANGSTROMS RESOLUTION
Classification: HYDROLASE(ENDORIBONUCLEASE)
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 1991-09-25
Authors: Martinez-Oyanedel, J., Heinemann, U., Saenger, W.
PDB entry 9rnz: Atomic resolution (1.02 A) XFEL structure of nitrite-bound copper nitrite reductase from Bradyrhizobium sp. determined by serial femtosecond rotation crystallography (SF-ROX) at 100 K
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2025-06-19
Authors: Rose, S.L., Antonyuk, S.V., Ferroni, F.M., Sugimoto, H., Yamashita, K., Hirata, K., Ago, H., Ueno, G., Murakami, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 9ro1: Atomic resolution (1.00 A) XFEL structure of as-isolated copper nitrite reductase from Bradyrhizobium sp. at high pH (7.3) determined by serial femtosecond rotation crystallography (SF-ROX) at 100 K
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2025-06-19
Authors: Rose, S.L., Antonyuk, S.V., Ferroni, F.M., Sugimoto, H., Yamashita, K., Hirata, K., Ago, H., Ueno, G., Murakami, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 9ro7: Crystal structure of human CD22 Ig domains 1-3 in complex with modified sialoside 7-012
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2025-06-20
Authors: Ereno-Orbea, J., Sicard, T., Julien, J.-P.
PDB entry 9ro8: Pantoea ananatis encodes an antibacterial and anti-eukaryotic human CD38 homologue T6SS ADP-ribosyl cyclase polymorphic toxin
Classification: TOXIN
Source organism: Pantoea ananatis LMG 20103
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-06-20
Authors: Martinkus, J., Terradot, L., Jurenas, D., Cascales, E.
PDB entry 9rob: Crystal structure of human CD22 Ig domains 1-3 in complex with modified sialoside 1B
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-06-20
Authors: Ereno-Orbea, J., Sicard, T., Julien, J.-P.
PDB entry 9roc: Atomic resolution (1.05 A) XFEL structure of chemically-reduced copper nitrite reductase from Bradyrhizobium sp. determined by serial femtosecond rotation crystallography (SF-ROX) at 100 K
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2025-06-20
Authors: Rose, S.L., Antonyuk, S.V., Ferroni, F.M., Sugimoto, H., Yamashita, K., Hirata, K., Ago, H., Ueno, G., Murakami, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 9ros: Atomic resolution (1.15 A) XFEL structure of as-isolated copper nitrite reductase from Bradyrhizobium sp. at low pH (5.5) determined by serial femtosecond rotation crystallography (SF-ROX) at 100 K
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-06-22
Authors: Rose, S.L., Antonyuk, S.V., Ferroni, F.M., Sugimoto, H., Yamashita, K., Hirata, K., Ago, H., Ueno, G., Murakami, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 9rp0: Ensemble refined structure of CotB2 in complex with 2-fluoro-3,7,18-dolabellatriene
Classification: HYDROLASE
Source organism: Streptomyces melanosporofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-06-23
Authors: Helmer, C.P.O., Loll, B.
PDB entry 9rp1: Ensemble refined structure of CotB2 in complex with alendronate
Classification: HYDROLASE
Source organism: Streptomyces melanosporofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-06-23
Authors: Helmer, C.P.O., Loll, B.
PDB entry 9rp2: Ensemble refined structure of CotB2 F107A in complex with alendronate
Classification: HYDROLASE
Source organism: Streptomyces melanosporofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-06-23
Authors: Helmer, C.P.O., Loll, B.
PDB entry 9rp3: Structure of Avast type 5 activator (Gp316, JADA jumbophage protein)
Classification: UNKNOWN FUNCTION
Source organism: Pseudomonas phage vB_PA32_GUMS
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-06-23
Authors: Pacesa, M., Muralidharan, A., Brouns, S.J.J.
PDB entry 9rp6: Crystal structure of covalent PDE6delta adduct modified by compound 13b
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-06-23
Authors: Zhang, R., Waldmann, H., Gasper, R.
PDB entry 9rp7: Crystal structure of covalent PDE6delta adduct modified by Deltafluorine (22a)
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-06-23
Authors: Binici, A., Waldmann, H., Gasper, R.
PDB entry 9rp9: Crystal structure of mouse pVHL-ElonginB-ElonginC complex
Classification: LIGASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-06-24
Authors: Blat, A., Biterova, E., Cukier, C.
PDB entry 9rpb: a5b3 GABAAR bound to GABA, and Mb25 in a desensitized state in saposin nanodiscs, topiramate-free
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-24
Authors: Cowgill, J., Lindahl, E., Howard, R.J.
PDB entry 9rpd: D. melanogaster Augmin TII N-clamp (GST-fusion) bound to a microtubule, well-defined subset of particles
Classification: CELL CYCLE
Source organism: Aequorea victoria; Drosophila melanogaster; Schistosoma japonicum; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2025-06-24
Authors: Wuertz, M., Vermeulen, B.J.A., Tonon, G., Pfeffer, S.
PDB entry 9rpk: Apo structure of Arabidopsis thaliana nicotinate mononucleotide adenylyltransferase
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-06-25
Authors: Sorci, L., Cianci, M., Fortunato, C., Gasparrini, M., Raffaelli, N.
PDB entry 9rpl: Lactobacillus acidophilus SlpA self assembly domains I-II (aa 49-308)
Classification: STRUCTURAL PROTEIN
Source organism: Lactobacillus acidophilus NCFM
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-06-25
Authors: Grininger, C., Pavkov-Keller, T.
PDB entry 9rpm: Structure of Arabidopsis thaliana nicotinate mononucleotide adenylyltransferase in complex with nicotinate mononucleotide (NaMN)
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2025-06-25
Authors: Sorci, L., Cianci, M., Fortunato, C., Gasparrini, M., Raffaelli, N.
PDB entry 9rpo: Crystal structure of DNPH1 bound by compound 3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.019 Å
Deposited: 2025-06-25
Authors: Collie, G.W.
PDB entry 9rpr: Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Shigella flexneri
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-06-25
Authors: Dunbar, E., Basle, A., van den Berg, B.
PDB entry 9rps: Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Escherichia phage Rtp; Shigella flexneri
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-06-25
Authors: Dunbar, E., Basle, A., van den Berg, B.
PDB entry 9rpt: Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Classification: MEMBRANE PROTEIN
Source organism: Escherichia phage Oekolampad; Shigella flexneri
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-06-25
Authors: Dunbar, E., Basle, A., van den Berg, B.
PDB entry 9rpv: Structure of the ZAK-bound human disome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2025-06-25
Authors: Niu, S., Beckmann, R.
PDB entry 9rpw: Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Classification: MEMBRANE PROTEIN
Source organism: Escherichia phage Oekolampad; Shigella flexneri
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-06-25
Authors: Dunbar, E., Basle, A., van den Berg, B.
PDB entry 9rpx: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry B06
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rpy: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry B07
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rpz: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry B10
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq0: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry C06
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq1: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry C08
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq2: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry C09
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq3: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry C10
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq4: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry D06
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq5: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry D07
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq6: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry E09
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq7: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry F02
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq8: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry F04
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rq9: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry F08
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqa: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry F09
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqb: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry F10
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqc: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry G02
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqd: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry G03
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqe: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry G11
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqf: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry H06
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqg: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry H07
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqh: Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry H12
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-06-25
Authors: Guenther, S., Galchenkova, M., Fischer, P., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Rodrigues, A.C., Senst, J., Meents, A.
PDB entry 9rqi: Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia phage Oekolampad; Shigella flexneri
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-06-25
Authors: Dunbar, E., Basle, A., van den Berg, B.
PDB entry 9rqk: COXSACKIE B3 2C PROTEIN IN COMPLEX WITH COMPOUND 53
Classification: VIRAL PROTEIN
Source organism: Coxsackievirus B3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.722 Å
Deposited: 2025-06-26
Authors: Barral, K., Coutard, B., Attoumani Madi, S.
PDB entry 9rqq: Tankyrase 2 in complex with an inhibitor
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-06-26
Authors: Bosetti, C., Lehtio, L.
PDB entry 9rqt: Heptameric AAV2 Rep40-dsDNA (ITR) complex in presence of ATPgS
Classification: DNA BINDING PROTEIN
Source organism: adeno-associated virus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-06-26
Authors: Rouse, S.L., Bubeck, D., Barritt, J.D., Xu, V., Wake, M.
PDB entry 9rrp: Tankyrase 2 in complex with an inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-06-27
Authors: Bosetti, C., Lehtio, L.
PDB entry 9rrs: AAV8 capsid in complex with Rep40 and ADP
Classification: VIRUS
Source organism: adeno-associated virus 2; adeno-associated virus 8
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.88 Å
Deposited: 2025-06-28
Authors: Rouse, S.L., Bubeck, D., Barritt, J.D., Xu, V., Wake, M.
PDB entry 9rry: Crystal structure of the human METTL3-METTL14 in complex with compound 1 (AD-79)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-06-30
Authors: Bedi, R.K., Dolbois, A., Caflisch, A.
PDB entry 9rrz: Sesterterpene Synthase from Kitasatospora viridis (apo)
Classification: LYASE
Source organism: Kitasatospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-06-30
Authors: Li, H., Troycke, P., Yin, Z., Groll, M., Dickschat, J.S.
PDB entry 9rs0: Crystal structure of the human METTL3-METTL14 in complex with compound 2 (T148)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-30
Authors: Bedi, R.K., Caflisch, A.
PDB entry 9rs1: Crystal structure of the human METTL3-METTL14 in complex with compound 2 (T148)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-06-30
Authors: Bedi, R.K., Caflisch, A.
PDB entry 9rs2: Sesterterpene Synthase from Kitasatospora viridis in complex with the surrogate GFSPP
Classification: LYASE
Source organism: Kitasatospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-30
Authors: Li, H., Troycke, P., Yin, Z., Groll, M., Dickschat, J.S.
PDB entry 9rs3: Crystal structure of the human METTL3-METTL14 in complex with compound 3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-06-30
Authors: Bedi, R.K., Caflisch, A.
PDB entry 9rs4: Sesterterpene Synthase from Kitasatospora viridis (V57L-Variant, apo)
Classification: LYASE
Source organism: Kitasatospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-06-30
Authors: Li, H., Troycke, P., Yin, Z., Groll, M., Dickschat, J.S.
PDB entry 9rs5: Sesterterpene Synthase from Kitasatospora viridis (I303Y-Variant, apo)
Classification: LYASE
Source organism: Kitasatospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-06-30
Authors: Li, H., Troycke, P., Yin, Z., Groll, M., Dickschat, J.S.
PDB entry 9rs6: Structure of the Ypt7 GEF complex Mon1-Ccz1 from Chaetomium Thermophilum
Classification: CYTOSOLIC PROTEIN
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-30
Authors: Wilmes, S., Schaefer, J., Moeller, A., Kuemmel, D.
PDB entry 9rs7: Ypt7 in complex with its GEF Mon1-Ccz1
Classification: CYTOSOLIC PROTEIN
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-30
Authors: Wilmes, S., Schaefer, J., Moeller, A., Kuemmel, D.
PDB entry 9rs8: human Fuzzy-Inturned
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-06-30
Authors: Wilmes, S., Schaefer, J., Januliene, D., Moeller, A., Kuemmel, D.
PDB entry 9rs9: Rab23 in complex with Fuzzy-Inturned
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-30
Authors: Wilmes, S., Schaefer, J., Januliene, D., Moeller, A., Kuemmel, D.
PDB entry 9rsa: CRYSTAL STRUCTURE OF TWO COVALENT NUCLEOSIDE DERIVATIVES OF RIBONUCLEASE A
Classification: HYDROLASE (PHOSPHORIC DIESTER)
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1989-08-28
Authors: Nachman, J., Wlodawer, A.
PDB entry 9rsc: Ternary complex of an improved charged molecular glue degrader ZZ2-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2025-07-01
Authors: Chrustowicz, J., Schulman, B.A.
PDB entry 9rsd: Ternary complex of a charged molecular glue degrader ZZ1-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-07-01
Authors: Chrustowicz, J., Schulman, B.A.
PDB entry 9rsj: Cryo-EM structure of MATE transporter NorM-VC in complex with doxorubicin
Classification: TRANSPORT PROTEIN
Source organism: Lama glama; synthetic construct; Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-07-01
Authors: Romane, K., Hsieh, P.Y., Kowal, J., Locher, K.P., van Veen, H.W.
PDB entry 9rsm: NetF 9mer pre-pore structure on 2N2 nanodiscs.
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Deposited: 2025-07-01
Authors: Iacovache, I., Wang, C., Zuber, B.
PDB entry 9rsp: Cryogenic crystal structure of the perdeuterated TTR mutant V30M at pH5.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-07-01
Authors: Sagot, J., Fisher, S.Z., Forsyth, T.V.
PDB entry 9rsr: Cryogenic crystal structure of the TTR mutant V30M at pH5.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-07-01
Authors: Sagot, J., Fisher, Z.F., Forsyth, T.V.
PDB entry 9rsu: NetF pore structure
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-07-01
Authors: Wang, C., Iacovache, I., Zuber, B.
PDB entry 9rsv: Complex of rice blast (Magnaporthe oryzae) effector protein AVR-Pia with the HMA domain of OsHPP09 from rice (Oryza sativa)
Classification: PLANT PROTEIN
Source organism: Oryza sativa; Pyricularia oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-07-01
Authors: Maidment, J.H.R., Bocquet, A., Gelin, M., De Guillen, K., Cesari, S.
PDB entry 9rsw: Crystal structure of the human METTL3-METTL14 in complex with compound 4
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2025-07-01
Authors: Bedi, R.K., Caflisch, A.
PDB entry 9rsx: Structure of RACK1 bound to the C-terminus of SERBP1 and the RIH region of ZAK
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-07-01
Authors: Niu, S., Beckmann, R.
PDB entry 9rt2: NetF - ANTXR2 structure (C4)
Classification: TOXIN
Source organism: Clostridium perfringens; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-07-01
Authors: Wang, C., Iacovache, I., Zuber, B.
PDB entry 9rt4: NetF - ANTXR2 local refinement focused
Classification: TOXIN
Source organism: Clostridium perfringens; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-07-02
Authors: Wang, C., Iacovache, I., Zuber, B.
PDB entry 9rt6: Structure of synthetic C-terminal biotinylated schistosomin with the point mutation D88E from Biomphalaria glabrata in P21 space group
Classification: TOXIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.897 Å
Deposited: 2025-07-02
Authors: Morera, S., Vigouroux, A.
PDB entry 9rti: Structure of WRN in complex with ATPgS and covalent ligand Compound 7
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.197 Å
Deposited: 2025-07-02
Authors: Fletcher, C.T., Rucktooa, P.
PDB entry 9rtj: Hydrid structure of the helix bundle domain of pRN1 primase in complex with DNA, ATP and dGTP
Classification: REPLICATION
Source organism: Saccharolobus islandicus; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR, SOLID-STATE NMR
Deposited: 2025-07-02
Authors: Wu, P., Damberger, F.F., Zehnder, J., Schroder, N., Lipps, G., Wiegand, T., Allain, F.H.-T.
PDB entry 9rtl: X-ray structure of the CTR107-N138A mutant bound to a tetramethylrhodamine ligand
Classification: UNKNOWN FUNCTION
Source organism: Chlorobaculum tepidum TLS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-07-02
Authors: Tarnawski, M., Kompa, J., Johnsson, K.
PDB entry 9rtm: X-ray structure of the rhodamine-binding protein tag (Rho-tag) bound to a tetramethylrhodamine ligand
Classification: UNKNOWN FUNCTION
Source organism: Chlorobaculum tepidum TLS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-02
Authors: Tarnawski, M., Kompa, J., Johnsson, K.
PDB entry 9rtn: State 2 MAP 2 SPT6 with SETD2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2025-07-03
Authors: Walshe, J.L., Ochmann, M., Dienemann, C., Cramer, P.
PDB entry 9rto: Room temperature crystal structure of the perdeuterated TTR mutant V30M at pH5.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-07-03
Authors: Sagot, J., Fisher, S.Z., Forsyth, T.V.
PDB entry 9rtt: Activated Elongation Complex with IWS1 and ELOF1
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2025-07-03
Authors: Walshe, J.L., Cramer, P.
PDB entry 9rtu: Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)
Classification: RIBOSOME
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-07-03
Authors: Ghosh Dastidar, N., Freyer, N., Petrychenko, V., Schwarzer, A.C., Peng, B.Z., Samatova, E., Kothe, C., Schmidt, M., Peske, F., Politi, A., Urlaub, H., Fischer, N., Rodnina, M.V., Wohlgemuth, I.
PDB entry 9rtv: Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)
Classification: RIBOSOME
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-07-03
Authors: Ghosh Dastidar, N., Freyer, N., Petrychenko, V., Schwarzer, A.C., Peng, B.Z., Samatova, E., Kothe, C., Schmidt, M., Peske, F., Politi, A., Urlaub, H., Fischer, N., Rodnina, M.V., Wohlgemuth, I.
PDB entry 9ru5: Cryo-EM structure of TCRpub/pMHC
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-07-03
Authors: Akil, C., Zhu, Y., Hardenbrook, N., Zhang, P.
PDB entry 9rub: CRYSTAL STRUCTURE OF ACTIVATED RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE COMPLEXED WITH ITS SUBSTRATE, RIBULOSE-1,5-BISPHOSPHATE
Classification: LYASE(CARBON-CARBON)
Source organism: Rhodospirillum rubrum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 1990-11-28
Authors: Lundqvist, T., Schneider, G.
PDB entry 9rup: Cryo-EM structure of TCRpub/pMHC dimer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.11 Å
Deposited: 2025-07-04
Authors: Akil, C., Zhu, Y., Hardenbrook, N., Zhang, P.
PDB entry 9rur: Structure of WRN in complex with ATPgS and covalent ligand Compound 4d
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.296 Å
Deposited: 2025-07-04
Authors: Fletcher, C.T., Rucktooa, P.
PDB entry 9rus: Structure of WRN in complex with ATPgS and Compound 3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.193 Å
Deposited: 2025-07-04
Authors: Fletcher, C.T., Rucktooa, P.
PDB entry 9ruv: X-ray structure of the adduct formed upon reaction of dirhodium-tetraacetate with lysozyme at body temperature
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2025-07-05
Authors: Tito, G., Ferraro, G., Merlino, A.
PDB entry 9ruw: Nicotine Glucoside Synthase (BBL) in complex with FAD
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2025-07-05
Authors: Schwabe, B.T.W., Lichman, B.R., Grogan, G.
PDB entry 9rv5: Crystal structure of SPSB2 SPRY domain in complex with linear TAT peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-07-07
Authors: Lenz, C., Knapp, S., Kraemer, A., Structural Genomics Consortium (SGC)
PDB entry 9rv6: 5 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-07-07
Authors: Mason, T.J., Carrillo, M., Beale, J.H., Padeste, C.
PDB entry 9rve: Structure of human 1918 influenza A polymerase heterotrimer in complex with 1918 NEP.
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Brevig Mission/1/1918(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-07-08
Authors: Rep, A., Wang, F., Chen, K., Carrique, L., Grimes, J.M., Fodor, E.
PDB entry 9rvg: Chorismate mutase
Classification: ISOMERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.109 Å
Deposited: 2025-07-08
Authors: Khatanbaatar, T., Cordara, G., Krengel, U.