LiteFold/PDB huggingface dataset:
PDB entry 8dss: X-ray crystal structure of Geobacillus stearothermophilus ComEA
Classification: DNA BINDING PROTEIN
Source organism: Geobacillus stearothermophilus ATCC 7953
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2022-07-22
Authors: Ahmed, I., Neiditch, M.B.
PDB entry 8dst: Cryo-EM of NBD-ffsy filaments (class 2)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-22
Authors: Wang, F., Guo, J., Xu, B., Egelman, E.H.
PDB entry 8dsu: Crystal Structure of SARS CoV-2 Mpro with Pfizer Intravenous Inhibitor PF-00835231
Classification: VIRAL PROTEIN/HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2022-07-22
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 8dsv: The structure of NicA2 in complex with N-methylmyosmine
Classification: FLAVOPROTEIN, OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-22
Authors: Wu, K., Dulchavsky, M., Li, J., Bardwell, J.C.A.
PDB entry 8dsw: Crystal structure of EGFR kinase domain, Exon20 Insertion FQEA mutant
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2022-07-23
Authors: Park, E., Eck, M.J.
PDB entry 8dsx: NMR STRUCTURE OF THE BACTERIOPHAGE LAMBDA EA22 C-TERMINAL DOMAIN
Classification: VIRAL PROTEIN
Source organism: Lambdavirus lambda
Experimental method: SOLUTION NMR
Deposited: 2022-07-23
Authors: Donaldson, L.W.
PDB entry 8dsy: PPARg bound to inverse agonist H3B-343
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2022-07-24
Authors: Larsen, N.A.
PDB entry 8dsz: PPARg bound to partial agonist H3B-487
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-24
Authors: Larsen, N.A.
PDB entry 8dt0: Scaffolding protein functional sites using deep learning
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2022-07-24
Authors: Bera, A.K., Watson, J., Baker, D.
PDB entry 8dt1: Crystal Structure of a Putative D-beta-hydroxybutyrate dehydrogenase from Burkholderia cenocepacia J2315 in complex with NAD
Classification: OXIDOREDUCTASE
Source organism: Burkholderia cenocepacia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-25
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dt2: X-ray structure of human acetylcholinesterase inhibited by paraoxon (POX-hAChE)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2022-07-25
Authors: Kovalevsky, A.Y., Gerlits, O., Radic, Z.
PDB entry 8dt3: Cryo-EM structure of spike binding to Fab of neutralizing antibody (locally refined)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-25
Authors: Sun, P.C., Fang, Y., Bai, X.C., Chen, Z.J.
PDB entry 8dt4: X-ray structure of human acetylcholinesterase ternary complex with paraoxon and oxime MMB4 (POX-hAChE-MMB4)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-25
Authors: Kovalevsky, A.Y., Gerlits, O., Radic, Z.
PDB entry 8dt5: X-ray structure of human acetylcholinesterase ternary complex with paraoxon and oxime RS170B (POX-hAChE-RS170B)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-07-25
Authors: Kovalevsky, A.Y., Gerlits, O., Radic, Z.
PDB entry 8dt6: Crystal Structure of DNA Polymerase III beta subunit from Elizabethkingia anophelis
Classification: DNA BINDING PROTEIN
Source organism: Elizabethkingia anophelis NUHP1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-07-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dt7: X-ray structure of human acetylcholinesterase in complex with oxime MMB4 (hAChE-MMB4)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.207 Å
Deposited: 2022-07-25
Authors: Kovalevsky, A.Y., Gerlits, O., Radic, Z.
PDB entry 8dt8: LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (focused refinement)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2022-07-25
Authors: Ozorowski, G., Turner, H.L., Ward, A.B.
PDB entry 8dt9: Crystal Structure of SARS CoV-2 Mpro mutant L141R with Pfizer Intravenous Inhibitor PF-00835231
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-25
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 8dta: Metal sensitive GFP (mseGFP) complexed with phenylarsine oxide.
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-07-25
Authors: Rosenbaum, J.C., Carlson, A.E.
PDB entry 8dtb: Focus/local refined map in C1 of signal subtracted RyR1 particles in complex with ImperaCalcin
Classification: TOXIN
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-07-25
Authors: Haji-Ghassemi, O., Van Petegm, F.
PDB entry 8dtc: Crystal Structure of Glucokinase with bound glucose from Acanthamoeba castellanii
Classification: TRANSFERASE
Source organism: Acanthamoeba castellanii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-07-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dtd: Crystal Structure of FosB from Bacillus cereus with Zinc and Phosphonoformate
Classification: TRANSFERASE
Source organism: Bacillus cereus ATCC 10987
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-07-25
Authors: Travis, S., Gilbert, N.C., Thompson, M.K.
PDB entry 8dte: Crystal Structure of a toluene tolerance periplasmic transport protein from Neisseria gonorrhoeae
Classification: TRANSPORT PROTEIN
Source organism: Neisseria gonorrhoeae NCCP11945
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dtf: Cryo-EM structure of the full length Arabidopsis SPY with complete TPRs
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-25
Authors: Kumar, S., Zhou, Y., Dillard, L., Borgnia, M.J., Bartesaghi, A., Zhou, P.
PDB entry 8dtg: Cryo-EM structure of Arabidopsis SPY alternative conformation 1
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-07-25
Authors: Kumar, S., Zhou, Y., Dillard, L., Borgnia, M.J., Bartesaghi, A., Zhou, P.
PDB entry 8dth: Cryo-EM structure of Arabidopsis SPY alternative conformation 2
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-25
Authors: Kumar, S., Zhou, Y., Dillard, L., Borgnia, M.J., Bartesaghi, A., Zhou, P.
PDB entry 8dti: Cryo-EM structure of Arabidopsis SPY in complex with GDP-fucose
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-07-25
Authors: Kumar, S., Zhou, Y., Dillard, L., Borgnia, M.J., Bartesaghi, A., Zhou, P.
PDB entry 8dtj: Human NAMPT in complex with small molecule activator ZN-43-S
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.118 Å
Deposited: 2022-07-25
Authors: Ratia, K., Xiong, R., Shen, Z., Thatcher, G.R.
PDB entry 8dtk: Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Classification: Viral Protein/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2022-07-25
Authors: May, A.J., Manne, K., Acharya, P.
PDB entry 8dtl: Cryo-EM structure of insulin receptor (IR) bound with S597 peptide
Classification: SIGNALING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.4 Å
Deposited: 2022-07-25
Authors: Park, J., Li, J., Mayer, J.P., Ball, K.A., Wu, J.Y., Hall, C., Accili, D., Stowell, M.H.B., Bai, X.C., Choi, E.
PDB entry 8dtm: Cryo-EM structure of insulin receptor (IR) bound with S597 component 2
Classification: SIGNALING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-26
Authors: Park, J., Li, J., Mayer, J.P., Ball, K.A., Wu, J.Y., Hall, C., Accili, D., Stowell, M.H.B., Bai, X.C., Choi, E.
PDB entry 8dtn: The complex of nanobody 6101 with BCL11A ZF6
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.199 Å
Deposited: 2022-07-26
Authors: Yin, M., Tenglin, K., Zhai, L., Dassama, L.M., Orkin, S.H.
PDB entry 8dto: Vaccine elicited Antibody MU89 bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2022-07-26
Authors: Stalls, V., Acharya, P.
PDB entry 8dtp: Close state of T4 bacteriophage gp41 hexamer bound with single strand DNA
Classification: REPLICATION/DNA/RNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-07-26
Authors: Feng, X., Li, H.
PDB entry 8dtq: Crystal Structure of Staphylococcus aureus pSK41 Cop
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-07-26
Authors: Walton, W.G., Eakes, T.C., Redinbo, M.R., McLaughlin, K.J.
PDB entry 8dtr: Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with neutralizing antibody COV30-14
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-26
Authors: Lee, C.C.D., Lin, T.H., Wilson, I.A.
PDB entry 8dts: X-ray crystal structure of AFSSFN from chaperone DNAJB8.
Classification: CHAPERONE
Experimental method: X-RAY DIFFRACTION
Resolution: 0.75 Å
Deposited: 2022-07-26
Authors: Boyer, D.R., Ryder, B., Sawaya, M.R., Joachimiak, L.A.
PDB entry 8dtt: Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with neutralizing antibody COV93-03
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-07-26
Authors: Lee, C.C.D., Lin, T.H., Wilson, I.A.
PDB entry 8dtu: The complex of nanobody 5344N74D with BCL11A ZF6.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.447 Å
Deposited: 2022-07-26
Authors: Yin, M., Tenglin, K., Zhai, L., Dassama, L.M., Orkin, S.H.
PDB entry 8dtw: The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023036
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2022-07-26
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 8dtx: Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with neutralizing antibody COV89-22
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-07-26
Authors: Lin, T.H., Lee, C.C.D., Wilson, I.A.
PDB entry 8dty: Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under closed-state conditions
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-26
Authors: Iyer, K.A., Hu, Y., Murayama, T., Samso, M.
PDB entry 8dtz: Recombinant mouse RyR2 triple phosphonull mutant S2807A/S2813A/S2030A in complex with FKBP12.6 and nanodisc under closed-state conditions
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-26
Authors: Iyer, K.A., Hu, Y., Murayama, T., Samso, M.
PDB entry 8du0: Crystal Structure of NADP bound GDP-L-fucose synthase from Brucella ovis
Classification: ISOMERASE
Source organism: Brucella ovis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-26
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8du1: Crystal Structure of NAD bound dTDP-glucose 4,6-dehydratase from Elizabethkingia anophelis
Classification: LYASE
Source organism: Elizabethkingia anophelis NUHP1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-07-26
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8du2: HnRNPA2 D290V LCD PM1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-26
Authors: Eisenberg, D.S., Lu, J., Ge, P., Boyer, D.R.
PDB entry 8du3: Crystal structure of A2AAR-StaR2-bRIL in complex with compound 21a
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-26
Authors: Shiriaeva, A., Stauch, B., Han, G.W., Cherezov, V.
PDB entry 8du4: Complex between RbBP5-WDR5 and an H2B-ubiquitinated nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2022-07-26
Authors: Niklas, H.A., Rahman, S., Worden, E.J., Wolberger, C.
PDB entry 8du5: Murine sialidase-1 (NEU1)
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-07-26
Authors: Gorelik, A., Illes, K., Nagar, B.
PDB entry 8du6: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (1'-(4-((1-ethylazetidin-3-yl)oxy)phenyl)-6'-hydroxy-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8du7: Room-temperature serial synchrotron crystallography (SSX) structure of apo PTP1B
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-07-27
Authors: Ebrahim, A., Sharma, S., Keedy, D.A.
PDB entry 8du8: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6-hydroxy-1-(4-((1-propylazetidin-3-yl)oxy)phenyl)-3,4-dihydroisoquinolin-2(1H)-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8du9: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6-hydroxy-1-(4-(2-(piperidin-1-yl)ethoxy)phenyl)-3,4-dihydroisoquinolin-2(1H)-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dua: SIV E660.CR54 SOS-2P Env Trimer with ITS92.02
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta; Simian immunodeficiency virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.32 Å
Deposited: 2022-07-27
Authors: Gorman, J., Kwong, P.D.
PDB entry 8dub: Estrogen Receptor Alpha Ligand Binding Domain in Complex with ((1'-(4-((1-ethylpyrrolidin-3-yl)methyl)phenyl)-6'-hydroxy-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8duc: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (1'-(4-(2-(1-ethylpyrrolidin-3-yl)ethoxy)phenyl)-6'-hydroxy-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dud: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6'-hydroxy-1'-(4-(2-(1-propylpyrrolidin-3-yl)ethoxy)phenyl)-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8due: Open state of T4 bacteriophage gp41 hexamer bound with single strand DNA
Classification: REPLICATION/DNA/RNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-27
Authors: Feng, X., Li, H.
PDB entry 8duf: Crystal structure of Venezuelan Equine Encephalitis alphavirus (VEEV) nonstructural protein 2 (nsp2) (K741A/K767A) protease domain
Classification: VIRAL PROTEIN
Source organism: Venezuelan equine encephalitis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2022-07-27
Authors: Lountos, G.T.
PDB entry 8dug: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6'-hydroxy-1'-(4-(2-((<i>S</i>)-3-methylpyrrolidin-1-yl)ethoxy)phenyl)-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8duh: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6'-hydroxy-1'-(4-(2-((<i>R</i>)-2-methylpyrrolidin-1-yl)ethoxy)phenyl)-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dui: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (1'-(4-(2-(dimethylamino)ethoxy)phenyl)-6'-hydroxy-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8duj: Global map in C1 of RyR1 particles in complex with ImperaCalcin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-27
Authors: Haji-Ghassemi, O., Van Petegm, F.
PDB entry 8duk: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6'-hydroxy-1'-(4-(2-(methylamino)ethoxy)phenyl)-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dul: Cryo-EM Structure of Antibody SKT05 in complex with Western Equine Encephalitis Virus spike (local refinement from VLP particles)
Classification: IMMUNE SYSTEM
Source organism: Macaca fascicularis; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.17 Å
Deposited: 2022-07-27
Authors: Cerutti, G., Verardi, R., Roederer, M., Shapiro, L.
PDB entry 8dun: Cryo-EM Structure of Antibody SKW11 in complex with Western Equine Encephalitis Virus spike (local refinement from VLP particles)
Classification: IMMUNE SYSTEM
Source organism: Macaca fascicularis; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.84 Å
Deposited: 2022-07-27
Authors: Cerutti, G., Verardi, R., Roederer, M., Shapiro, L.
PDB entry 8duo: DNA-free T4 Bacteriophage gp41 hexamer
Classification: REPLICATION/DNA/RNA
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2022-07-27
Authors: Feng, X., Li, H.
PDB entry 8dur: Crystal structure of apo protein arginine N-methyltransferase 1 (PRMT1) from Naegleria fowleri
Classification: TRANSFERASE
Source organism: Naegleria fowleri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-07-27
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dus: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (1'-(4-(2-(ethylamino)ethoxy)phenyl)-6'-hydroxy-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-27
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dut: Duplex-G-quadruplex-duplex (DGD) class_1
Classification: DNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.4 Å
Deposited: 2022-07-27
Authors: Monsen, R.C., Chua, E.Y.D., Hopkins, J.B., Chaires, J.B., Trent, J.O.
PDB entry 8duw: HnRNPA2 D290V LCD PM2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-27
Authors: Eisenberg, D.S., Lu, J., Ge, P., Boyer, D.R.
PDB entry 8duy: Crystal structure of Cystathionine beta-lyase from Klebsiella pneumoniae
Classification: LYASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-27
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8duz: Protective antibody against gonococcal lipooligosaccharide bound to peptide mimetic
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-07-27
Authors: Beernink, P.T., Beernink, B.P., Rice, P.A., Ram, S.
PDB entry 8dv0: Crystal Structure of a Dephospho-CoA kinase from Rickettsia felis
Classification: TRANSFERASE
Source organism: Rickettsia felis URRWXCal2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-07-27
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dv1: SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-27
Authors: QCRG Structural Biology Consortium, Remesh, S.G., Merz, G.E., Brilot, A.F., Chio, U., Verba, K.A.
PDB entry 8dv2: SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-27
Authors: QCRG Structural Biology Consortium, Remesh, S.G., Merz, G.E., Brilot, A.F., Chio, U., Verba, K.A.
PDB entry 8dv3: Crystal structure of human CD1b presenting Phosphatidylinositol C34:1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-28
Authors: Farquhar, R., Rossjohn, J., Shahine, A.
PDB entry 8dv4: Crystal structure of the BC8B TCR-CD1b-PI complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-07-28
Authors: Farquhar, R., Rossjohn, J., Shahine, A.
PDB entry 8dv5: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6'-hydroxy-1'-(4-((1-pentylpyrrolidin-3-yl)methoxy)phenyl)-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-07-28
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dv6: Zika virus envelope protein structure in complex with a potent Human mAb
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Zika virus ZIKV/Human/Cambodia/FSS13025/2010
Experimental method: X-RAY DIFFRACTION
Resolution: 3.38 Å
Deposited: 2022-07-28
Authors: Cameron, A., Puhl, A.C., deSilva, A.M., Premkumar, L.
PDB entry 8dv7: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6'-hydroxy-1'-(4-(2-(1-propylpyrrolidin-3-yl)ethyl)phenyl)-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2022-07-28
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dv8: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (6'-hydroxy-1'-(4-((2-(1-propylpyrrolidin-3-yl)ethyl)thio)phenyl)-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-28
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dvb: Estrogen Receptor Alpha Ligand Binding Domain in Complex with (1'-(4-((1-butylpyrrolidin-3-yl)methoxy)phenyl)-6'-hydroxy-1',4'-dihydro-2'<i>H</i>-spiro[cyclopropane-1,3'-isoquinolin]-2'-yl)(phenyl)methanone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-07-28
Authors: Hancock, G.R., Young, K.S., Hosfield, D.J., Joiner, C., Sullivan, E.A., Yildz, Y., Laine, M., Greene, G.L., Fanning, S.W.
PDB entry 8dvc: Receptor ShHTL5 from Striga hermonthica in complex with strigolactone agonist GR24
Classification: SIGNALING PROTEIN
Source organism: Striga hermonthica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.638 Å
Deposited: 2022-07-28
Authors: Arellano-Saab, A., Skarina, T., Yim, V., Savchenko, A., Stogios, P.J., McCourt, P.
PDB entry 8dvd: Cryo-EM structure of SIVmac239 SOS-2P Env trimer in complex with human bNAb PGT145
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Simian immunodeficiency virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2022-07-28
Authors: Gorman, J., Kwong, P.D.
PDB entry 8dve: RyR1 in presence of IpCa-T26E phosphomimetic and activating ligands
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2022-07-28
Authors: Haji-Ghassemi, O., Van Petegm, F.
PDB entry 8dvf: T4 Bacteriophage primosome with single strand DNA, state 1
Classification: REPLICATION/DNA/RNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-28
Authors: Feng, X., Li, H.
PDB entry 8dvg: Structure of KRAS WT(7-16)-HLA-A*03:01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.594 Å
Deposited: 2022-07-28
Authors: Wright, K.M., Miller, M., Gabelli, S.B.
PDB entry 8dvh: Crystal structure of ATP-dependent Lon protease from Bacillus subtillis (BsLonBA)
Classification: HYDROLASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-29
Authors: Sekula, B., Li, M., Gustchina, A., Wlodawer, A.
PDB entry 8dvi: T4 bacteriophage primosome with single strand DNA, State 2
Classification: REPLICATION/DNA/RNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-29
Authors: Feng, X., Li, H.
PDB entry 8dvl: Crystal structure of LRP6 E3E4 in complex with disulfide constrained peptide E3.18
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-29
Authors: Thakur, A.K., Liau, N.P.D., Sudhamsu, J., Hannoush, R.N.
PDB entry 8dvm: Crystal structure of LRP6 E3E4 in complex with disulfide constrained peptide E3.6
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-29
Authors: Thakur, A.K., Liau, N.P.D., Sudhamsu, J., Hannoush, R.N.
PDB entry 8dvn: Crystal structure of LRP6 E3E4 in complex with disulfide constrained peptide E3.10
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2022-07-29
Authors: Thakur, A.K., Liau, N.P.D., Sudhamsu, J., Hannoush, R.N.
PDB entry 8dvo: The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023044
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2022-07-29
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 8dvp: Glycosylase MutY variant N146S in complex with DNA containing d(8-oxo-G) paired with substrate purine
Classification: HYDROLASE/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-07-29
Authors: Demir, M., Russelburg, L.P., Horvath, M.P., David, S.S.
PDB entry 8dvq: CA domain of VanSA histidine kinase
Classification: SIGNALING PROTEIN
Source organism: Enterococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-07-29
Authors: Loll, P.J.
PDB entry 8dvr: Cryo-EM structure of RIG-I bound to the end of p3SLR30 (+AMPPNP)
Classification: Hydrolase/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-29
Authors: Wang, W., Pyle, A.M.
PDB entry 8dvs: Cryo-EM structure of RIG-I bound to the end of OHSLR30 (+ATP)
Classification: Hydrolase/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-29
Authors: Wang, W., Pyle, A.M.
PDB entry 8dvu: Cryo-EM structure of RIG-I bound to the internal sites of OHSLR30 (+ATP)
Classification: Hydrolase/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-29
Authors: Wang, W., Pyle, A.M.
PDB entry 8dvv: Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2022-07-29
Authors: Iyer, K.A., Hu, Y., Murayama, T., Samso, M.
PDB entry 8dvw: Structure of the Campylobacter concisus glycosyltransferase PglA R203Q
Classification: MEMBRANE PROTEIN
Source organism: Campylobacter concisus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-07-30
Authors: Vuksanovic, N., Clasman, J.R., Bernstein, H.M., Imperiali, B., Allen, K.N.
PDB entry 8dvx: Structure of acetylated Pig somatic Cytochrome c (Aly39) at 1.5A
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-30
Authors: Edwards, B.F.P., Huettemann, M., Vaishnav, A., Brunzelle, J., Morse, P., Wan, J.
PDB entry 8dvy: DNA glycosylase MutY variant N146S in complex with DNA containing d(8-oxo-G) paired with an enzyme-generated abasic site product (AP) and crystalized with calcium acetate
Classification: HYDROLASE/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2022-07-30
Authors: Demir, M., Russelburg, L.P., Horvath, M.P., David, S.S.
PDB entry 8dvz: Structure of the Campylobacter concisus glycosyltransferase PglA R282V variant
Classification: MEMBRANE PROTEIN
Source organism: Campylobacter concisus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2022-07-30
Authors: Vuksanovic, N., Clasman, J.R., Bernstein, H.M., Imperiali, B., Allen, K.N.
PDB entry 8dw0: Glycosylase MutY variant N146S in complex with DNA containing d(8-oxo-G) paired with an enzyme-generated abasic site (AP) product and crystallized with sodium acetate
Classification: HYDROLASE/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2022-07-30
Authors: Demir, M., Russelburg, L.P., Horvath, M.P., David, S.S.
PDB entry 8dw1: Crystal structure of a host-guest complex with 5'-CTTAGTTATAACTAAG-3'
Classification: DNA BINDING PROTEIN/DNA
Source organism: Moloney murine leukemia virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.849 Å
Deposited: 2022-07-30
Authors: Georgiadis, M.M.
PDB entry 8dw2: Cryo-EM structure of SARS-CoV-2 RBD in complex with anti-SARS-CoV-2 DARPin,SR22, and two antibody Fabs, S309 and CR3022
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.11 Å
Deposited: 2022-07-30
Authors: Kwon, Y.D., Gorman, J., Kwong, P.D.
PDB entry 8dw3: Cryo-EM structure of SARS-CoV-2 RBD in complex with anti-SARS-CoV-2 DARPin,SR16m, and two antibody Fabs, S309 and CR3022
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.26 Å
Deposited: 2022-07-30
Authors: Kwon, Y.D., Gorman, J., Kwong, P.D.
PDB entry 8dw4: Glycosylase MutY variant N146S in complex with DNA containing d(8-oxo-G) paired with an abasic site product (AP) generated by the enzyme in crystals by removal of calcium
Classification: HYDROLASE/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2022-07-31
Authors: Demir, M., Russelburg, L.P., Horvath, M.P., David, S.S.
PDB entry 8dw5: Complex of Human Transthyretin with 3',5'-Dichlorophenylanthranilic Acid
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-07-31
Authors: Truong, J.Q., Holdsworth, B., Holien, J.K.
PDB entry 8dw6: T4 bacteriophage primosome with single-strand DNA, State 3
Classification: REPLICATION/DNA/RNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-31
Authors: Feng, X., Li, H.
PDB entry 8dw7: DNA glycosylase MutY variant N146S in complex with DNA containing the transition state analog 1N paired with d(8-oxo-G)
Classification: HYDROLASE/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2022-07-31
Authors: Demir, M., Russelburg, L.P., Horvath, M.P., David, S.S.
PDB entry 8dw8: Host-guest structure of BLMA2 partially bound to 5'-ATTAGTTATAACTAAT-3'
Classification: DNA BINDING PROTEIN/DNA
Source organism: Moloney murine leukemia virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2022-07-31
Authors: Georgiadis, M.M.
PDB entry 8dw9: Crystal structure of neutralizing antibody D29 Fab in complex with SARS-CoV-2 spike receptor binding domain (RBD)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2022-08-01
Authors: Reddem, E.R., Shapiro, L.
PDB entry 8dwa: Crystal structure of neutralizing antibody P1D9 Fab in complex with SARS-CoV-2 spike receptor binding domain (RBD)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-08-01
Authors: Reddem, E.R., Shapiro, L.
PDB entry 8dwb: Neuraminidase from influenza virus A/Moscow/10/1999(H3N2) in complex with sialic acid
Classification: VIRAL PROTEIN, Hydrolase
Source organism: Influenza A virus (A/Moscow/10/1999(H3N2))
Experimental method: X-RAY DIFFRACTION
Resolution: 1.602 Å
Deposited: 2022-08-01
Authors: Lei, R., Hernandez Garcia, A.
PDB entry 8dwc: CryoEM structure of Gq-coupled MRGPRX1 with peptide agonist BAM8-22
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2022-08-01
Authors: Liu, Y., Cao, C., Fay, J.F., Roth, B.L.
PDB entry 8dwd: Adenine glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with an AP site generated by the enzyme acting on purine
Classification: HYDROLASE/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2022-08-01
Authors: Russelburg, L.P., Demir, M., David, S.S., Horvath, M.P.
PDB entry 8dwe: Adenine glycosylase MutY variant E43Q in complex with DNA containing d(8-oxo-G) paired with substrate purine
Classification: HYDROLASE/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-08-01
Authors: Russelburg, L.P., Demir, M., David, S.S., Horvath, M.P.
PDB entry 8dwf: Glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with substrate adenine
Classification: HYDROLASE/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-08-01
Authors: Russelburg, L.P., Demir, M., David, S.S., Horvath, M.P.
PDB entry 8dwg: CryoEM structure of Gq-coupled MRGPRX1 with peptide ligand BAM8-22 and positive allosteric modulator ML382
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2022-08-01
Authors: Liu, Y., Cao, C., Fay, J.F., Roth, B.L.
PDB entry 8dwh: CryoEM structure of Gq-coupled MRGPRX1 with ligand Compound-16
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-08-01
Authors: Liu, Y., Cao, C., Fay, J.F., Roth, B.L.
PDB entry 8dwi: Molecular Mechanism of Sialic Acid Transport Mediated by Sialin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-01
Authors: Hu, W., Zheng, H.
PDB entry 8dwj: Primase of mutant bacteriophage T4 primosome with single strand DNA/RNA primer hybrid in primer exiting state
Classification: REPLICATION/DNA/RNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-08-01
Authors: Feng, X., Li, H.
PDB entry 8dwk: Inhibitor-3:PP1 reconstituted complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-01
Authors: Choy, M.S., Srivastava, G., Page, R., Peti, W.
PDB entry 8dwl: Inhibitor-3:PP1 coexpressed complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-01
Authors: Choy, M.S., Srivastava, G., Page, R., Peti, W.
PDB entry 8dwm: Host-guest complex of bleomycin A2 fully bound to CTTAGTTATAACTAAG
Classification: DNA BINDING PROTEIN/DNA
Source organism: Moloney murine leukemia virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2022-08-01
Authors: Georgiadis, M.M.
PDB entry 8dwn: Crystal structure of bis-phosphorylated insulin receptor kinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-08-01
Authors: Hubbard, S.R.
PDB entry 8dwo: Cryo-EM Structure of Eastern Equine Encephalitis Virus in complex with SKE26 Fab
Classification: VIRUS LIKE PARTICLE
Source organism: Eastern equine encephalitis virus; Macaca fascicularis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-01
Authors: Pletnev, S., Verardi, R., Roedeger, M., Kwong, P.
PDB entry 8dwq: Solution Structure of the H3 protein
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2022-08-01
Authors: Kelly, M.J.
PDB entry 8dwr: Crystal structure of the L333V variant of catalase-peroxidase from Mycobacterium tuberculosis
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-01
Authors: Diaz-Vilchis, A., Uribe-Vazquez, B., Avila-Linares, A., Rudino-Pinera, E., Soberon, X.
PDB entry 8dws: Full-length E47K SPOP
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2022-08-02
Authors: Cuneo, M.J., Mittag, T., O'Flynn, B., Lo, Y.H.
PDB entry 8dwt: SPOP W22R Form 2
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å
Deposited: 2022-08-02
Authors: Cuneo, M.J., Mittag, T., O'Flynn, B., Lo, Y.H.
PDB entry 8dwu: SPOP W22R Form 1
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-02
Authors: Cuneo, M.J., Mittag, T., O'Flynn, B.
PDB entry 8dwv: Full-length wild type SPOP
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-02
Authors: Cuneo, M.J., Mittag, T., O'Flynn, B., Lo, Y.H.
PDB entry 8dww: Chikungunya VLP in complex with neutralizing Fab 506.A08 (asymmetric unit)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Chikungunya virus strain Senegal 37997; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-08-02
Authors: Adams, L.J., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8dwx: Chikungunya VLP in complex with neutralizing Fab 506.C01 (asymmetric unit)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Chikungunya virus strain Senegal 37997; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2022-08-02
Authors: Adams, L.J., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8dwy: Chikungunya VLP in complex with neutralizing Fab CHK-265 (asymmetric unit)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Chikungunya virus strain Senegal 37997; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-08-02
Authors: Adams, L.J., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8dwz: CA domain of VanSA histidine kinase, 7 keV data
Classification: SIGNALING PROTEIN
Source organism: Enterococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2022-08-02
Authors: Loll, P.J.
PDB entry 8dx0: VanSC CA domain
Classification: SIGNALING PROTEIN
Source organism: Enterococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-08-02
Authors: Loll, P.J.
PDB entry 8dx1: [C:Hg2+/Ag+:C--pH 7 MOPS] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution in MOPS
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.79 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dx2: HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-amino-3-bromopyridine at multiple sites
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dx3: HIV-1 reverse transcriptase/rilpivirine with bound fragment 3-bromobenzylamine in the thumb subdomain
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus 1; Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dx4: Clostridioides difficile R20291 minor pilin - PilW fused with Maltose Binding Protein
Classification: DNA BINDING PROTEIN
Source organism: Clostridioides difficile R20291; Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.487 Å
Deposited: 2022-08-02
Authors: Ronish, L.A., Piepenbrink, K.
PDB entry 8dx5: [C:Hg2+/Ag+:C--pH 5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.9 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dx6: [C:Hg2+/Ag+:C--pH 5.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.34 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dx7: [C:Hg2+/Ag+:C--pH 6] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.92 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dx8: HIV-1 reverse transcriptase/rilpivirine with bound fragment 2-chloro-6-fluorophenethylamine at the 415 site
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.