LiteFold/PDB huggingface dataset:
PDB entry 8kb5: Cryo-EM structure of the human nucleosome containing H3.8
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26133 Å
Deposited: 2023-08-03
Authors: Hirai, H., Kujirai, T., Takizawa, Y., Kurumizaka, H.
PDB entry 8kb6: Crystal Structure of Canine TNF-alpha
Classification: CYTOKINE
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85017 Å
Deposited: 2023-08-03
Authors: Lee, C.C., Wang, A.H.-J.
PDB entry 8kb7: Crystal structure of UDP/mannose-bound AGO61/beta-1,4-N-Acetylglucosaminyltransferase 2 (POMGNT2)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-04
Authors: Satoh, T., Umezawa, F., Yagi, H., Kato, K.
PDB entry 8kb8: Structure of the WDR91 WD40 domain complexed with Rab7
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-08-04
Authors: Li, J., Ma, X.L., Banerjee, S., Dong, Z.G.
PDB entry 8kb9: Structure of the WDR91 WD40 domain
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-04
Authors: Li, J., Ma, X.L., Banerjee, S., Dong, Z.G.
PDB entry 8kbb: Structure of apo-CmTad1
Classification: VIRAL PROTEIN
Source organism: Clostridioides mangenotii LM2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbc: Structure of CmTad1 complexed with cAAA
Classification: VIRAL PROTEIN
Source organism: Clostridioides mangenotii LM2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbd: Structure of CmTad1 complexed with cAAG
Classification: VIRAL PROTEIN/RNA
Source organism: Clostridioides mangenotii LM2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbe: Structure of CbTad1 complexed with 1',3'-cADPR
Classification: VIRAL PROTEIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbf: Structure of CbTad1 complexed with 1',3'-cADPR and cA3
Classification: VIRAL PROTEIN
Source organism: Clostridium botulinum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbg: Structure of CbTad1 complexed with 2',3'-cGAMP
Classification: VIRAL PROTEIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbh: Structure of CbTad1 complexed with 2',3'-cGAMP and cA3
Classification: VIRAL PROTEIN
Source organism: Clostridium botulinum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbi: Structure of apo-AcrIIA7
Classification: VIRAL PROTEIN
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbj: Structure of HgmTad2 complexed with 1',2'-cADPR
Classification: VIRAL PROTEIN
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbk: Structure of AcrIIA7 complexed with 1',2'-cADPR and cGG
Classification: VIRAL PROTEIN
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbl: Structure of AcrIIA7 complexed with 1',3'-cADPR and cGG
Classification: VIRAL PROTEIN
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbm: Structure of AcrIIA7 complexed with cGG
Classification: VIRAL PROTEIN
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2023-08-04
Authors: Xiao, Y., Feng, Y.
PDB entry 8kbw: The crystal structure of syn-copalyl diphosphate synthase from Oryza sativa
Classification: ISOMERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2023-08-04
Authors: Ma, X.L., Xu, H.F., Jiang, T.
PDB entry 8kbx: Cryo-EM structure of human ATG2A-WIPI4 complex
Classification: LIPID TRANSPORT/MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-08-04
Authors: Wang, Y., Stjepanovic, G.
PDB entry 8kby: Cryo-EM structure of ATG2A
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-08-04
Authors: Wang, Y., Stjepanovic, G.
PDB entry 8kbz: Cryo-EM structure of human ATG9A in LMNG micelles
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2023-08-04
Authors: Yang, W., Goran, S.
PDB entry 8kc0: De novo design protein -NB8
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-05
Authors: Wang, S., Liu, Y.
PDB entry 8kc1: De novo design protein -NX5
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-05
Authors: Wang, S., Liu, Y.
PDB entry 8kc2: Cryo-EM structure of SARS-CoV-2 BA.3 RBD in complex with golden hamster ACE2 (local refinement)
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Mesocricetus auratus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-05
Authors: Niu, S., Zhao, Z.N., Chai, Y., Gao, G.F.
PDB entry 8kc3: Cryo-EM structure of human C-terminally bound ATG9A-ATG2A-WIPI4 complex
Classification: LIPID TRANSPORT/MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2023-08-05
Authors: Wang, Y., Stjepanovic, G.
PDB entry 8kc4: De novo design protein -NA05
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-06
Authors: Wang, S., Liu, Y.
PDB entry 8kc5: De novo design protein -T09
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-06
Authors: Wang, S., Liu, Y.
PDB entry 8kc6: X-ray structure of 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Lentilactobacillus kefiri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-08-06
Authors: Song, S.K., Lv, D.Q., Cheng, X.Y., Ma, Q.Q., Hu, Y.L., Su, Z.D.
PDB entry 8kc7: Rpd3S histone deacetylase complex
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-08-06
Authors: Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.
PDB entry 8kc8: De novo design protein -T11
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-08-06
Authors: Wang, S., Liu, Y.
PDB entry 8kc9: Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, bound to cyclosporin A
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; Tolypocladium inflatum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-08-06
Authors: Li, W., Peng, J., Yao, D., Rao, B., Xia, Y., Wang, Q., Li, S., Cao, M., Shen, Y., Ma, P., Liao, R., Qin, A., Zhao, J., Cao, Y.
PDB entry 8kca: Crystal structure of DDX53 helicase domain
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-08-06
Authors: Park, S., Yang, J.B., Jung, H.S., Kim, H.Y.
PDB entry 8kcb: Complex of DDM1-nucleosome(H2A) complex with DDM1 bound to SHL2
Classification: STRUCTURAL PROTEIN
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-08-07
Authors: Zhang, H., Zhang, Y.
PDB entry 8kcc: Complex of DDM1-nucleosome(H2A.W) complex with DDM1 bound to SHL2
Classification: STRUCTURAL PROTEIN
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-07
Authors: Zhang, H., Zhang, Y.
PDB entry 8kce: Structure of RvY_06210 at 1.05 angstrom resolution
Classification: HYDROLASE
Source organism: Ramazzottius varieornatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2023-08-07
Authors: Kato, S., Fukuda, Y., Inoue, T.
PDB entry 8kci: ATP-bound hMRP5 outward-open
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2023-08-07
Authors: Liu, Z.M., Huang, Y.
PDB entry 8kcj: De novo design protein -N7
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-08-07
Authors: Wang, S., Liu, Y.
PDB entry 8kck: De novo design protein -N9
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-08-07
Authors: Wang, S., Liu, Y.
PDB entry 8kcl: Crystal Structure of M- and C-Domains of the shaft pilin LrpA from Ligilactobacillus ruminis - Triclinic form
Classification: CELL ADHESION
Source organism: Ligilactobacillus ruminis ATCC 25644
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-08-08
Authors: Prajapati, A., Palva, A., von Ossowski, I., Krishnan, V.
PDB entry 8kcm: MmCPDII-DNA complex containing low-dosage, light induced repaired DNA.
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-08
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 8kcn: X-ray structure of 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase mutant
Classification: OXIDOREDUCTASE
Source organism: Lactobacillaceae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-08-08
Authors: Song, S.K., Ma, Q.Q., Lv, D.Q., Cheng, C.Y., Su, Z.D.
PDB entry 8kco: Cryo-EM structure of human gamma-secretase in complex with RO4929097
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-08
Authors: Guo, X., Li, H., Kai, U., Yan, C., Lei, J., Zhou, R., Shi, Y.
PDB entry 8kcp: Cryo-EM structure of human gamma-secretase in complex with Crenigacestat
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-08-08
Authors: Guo, X., Li, H., Kai, U., Yan, C., Lei, J., Zhou, R., Shi, Y.
PDB entry 8kcq: Solution structures of the N-terminal divergent caplonin homology (NN-CH) domains of human intraflagellar transport protein 54
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-08
Authors: Dang, W., Kuwasako, K., He, F., Takahashi, M., Tsuda, K., Nagata, T., Tanaka, A., Kobayashi, N., Kigawa, T., Guentert, P., Shirouzu, M., Yokoyama, S., Muto, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 8kcs: Cryo-EM structure of human gamma-secretase in complex with BMS906024
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-08-08
Authors: Guo, X., Li, H., Kai, U., Yan, C., Lei, J., Zhou, R., Shi, Y.
PDB entry 8kct: Cryo-EM structure of human gamma-secretase in complex with Nirogacestat
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-08
Authors: Guo, X., Li, H., Kai, U., Yan, C., Lei, J., Zhou, R., Shi, Y.
PDB entry 8kcu: Cryo-EM structure of human gamma-secretase in complex with MK-0752
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-08-08
Authors: Guo, X., Li, H., Kai, U., Yan, C., Lei, J., Zhou, R., Shi, Y.
PDB entry 8kcv: Crystal structure of UDA01-CAAMDDFQL
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos; unidentified influenza virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-08-08
Authors: Tang, Z., Zhang, N.
PDB entry 8kcw: Cryo-EM structure of human SIDT1 bound to cholesterol
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-08-08
Authors: Hirano, Y., Ohto, U., Shimizu, T.
PDB entry 8kcx: Cryo-EM structure of human SIDT1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-08-08
Authors: Hirano, Y., Ohto, U., Shimizu, T.
PDB entry 8kcy: Structure of nucleosome complexed with two DEK molecules
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-08
Authors: Kujirai, T., Echigoya, K., Takizawa, Y., Kurumizaka, H.
PDB entry 8kcz: Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 1,4-androstadiene-3,17- dione
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-08
Authors: Hu, Y.L., Li, X., Cheng, X.Y., Song, S.K., Su, Z.D.
PDB entry 8kd0: Crystal structure of SAR11_0769 from 'Candidatus Pelagibacter ubique' HTCC1062 bound to a co-purified ligand, beta-galactopyranose
Classification: TRANSPORT PROTEIN
Source organism: Candidatus Pelagibacter ubique HTCC1062
Experimental method: X-RAY DIFFRACTION
Resolution: 1.675 Å
Deposited: 2023-08-08
Authors: Clifton, B.E., Laurino, P.
PDB entry 8kd1: Structure of nucleosome complexed with one DEK molecule
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-08
Authors: Kujirai, T., Echigoya, K., Takizawa, Y., Kurumizaka, H.
PDB entry 8kd2: Rpd3S in complex with 187bp nucleosome
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-08-09
Authors: Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.
PDB entry 8kd3: Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-09
Authors: Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.
PDB entry 8kd4: Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-08-09
Authors: Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.
PDB entry 8kd5: Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-09
Authors: Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Chang, X., Chao, W.C.H., He, J.
PDB entry 8kd6: Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-08-09
Authors: Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.
PDB entry 8kd7: Rpd3S in complex with nucleosome with H3K36MLA modification and 167bp DNA
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2023-08-09
Authors: Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Chang, X., Chao, W.C.H., He, J.
PDB entry 8kd8: N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF N-terminal domain
Classification: TRANSFERASE
Source organism: Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.581 Å
Deposited: 2023-08-09
Authors: Poonsiri, T., Demitri, N., Benini, S.
PDB entry 8kd9: Cryo-EM structure of Aquifex aeolicus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Classification: HYDROLASE-RNA COMPLEX
Source organism: Aquifex aeolicus VF5; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-08-09
Authors: Teramoto, T., Koyasu, T., Mayanagi, K., Yokogawa, T., Adachi, N., Nakamura, T., Senda, T., Kakuta, Y.
PDB entry 8kda: Cryo-EM structure of Hydrogenobacter thermophilus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Classification: HYDROLASE/RNA
Source organism: Hydrogenobacter thermophilus DSM 653; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-08-09
Authors: Teramoto, T., Adachi, N., Yokogawa, T., Koyasu, T., Mayanagi, K., Nakamura, T., Senda, T., Kakuta, Y.
PDB entry 8kdb: Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in dimeric form
Classification: VIRAL PROTEIN
Source organism: Human respirovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-08-09
Authors: Xie, J., Wang, L., Zhai, G., Wu, D., Lin, Z., Wang, M., Yan, X., Gao, L., Huang, X., Fearns, R., Chen, S.
PDB entry 8kdc: Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in monomeric form
Classification: VIRAL PROTEIN
Source organism: Human respirovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-09
Authors: Xie, J., Wang, L., Zhai, G., Wu, D., Lin, Z., Wang, M., Yan, X., Gao, L., Huang, X., Fearns, R., Chen, S.
PDB entry 8kdd: Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kde: Cryo-EM structure of an intermediate-state complex during the process of photosystem II repair
Classification: PHOTOSYNTHESIS
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-09
Authors: Li, A., Wang, Y., Liu, Z.
PDB entry 8kdf: Structure of LAT1-CD98hc in complex with JPH203, focused on TMD
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kdg: Structure of LAT1-CD98hc-Fab170 in complex with BCH, consensus map
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kdh: Structure of LAT1-CD98hc in complex with BCH, focused on TMD
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kdi: Structure of apo inward-open LAT1-CD98hc-Fab170 in nanodisc, consensus map
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kdj: Structure of apo inward-open LAT1-CD98h in nanodisc, focused on TMD
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kdk: Crystal structure of CcbF in complex with PLP
Classification: LYASE
Source organism: Streptomyces caelestis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-09
Authors: Mori, T., Lyu, S., Kadlcik, S., Abe, I.
PDB entry 8kdl: Crystal structure of LmbF in complex with PLP
Classification: LYASE
Source organism: Streptomyces lincolnensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-09
Authors: Mori, T., Lyu, S., Kadlcik, S., Abe, I.
PDB entry 8kdm: Structure of SARS-CoV Spike protein complexed with antibody PW5-5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-08-09
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kdn: Structure of LAT1-CD98hc in complex with L-Phe, focused on TMD
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kdo: Structure of LAT1-CD98hc in complex with melphalan, focused on TMD
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kdp: Structure of apo outward-open LAT1-CD98h in nanodisc, focused on TMD
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2023-08-09
Authors: Lee, Y.
PDB entry 8kdq: De novo design protein -T03
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-09
Authors: Wang, S., Liu, Y.
PDB entry 8kdr: The local refined map of SARS-CoV-2 XBB Variant Spike protein complexed with antibody PW5-535
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-10
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kds: Trimer state of SARS-CoV Spike protein complexed with antibody PW5-535
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-08-10
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kdt: The local refined map of SARS-CoV Spike protein complexed with antibody PW5-5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-08-10
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kdu: Crystal structure of trypsin with its substrate
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-10
Authors: Akbar, Z., Ahmad, M.S.
PDB entry 8kdx: Tau-S214 Phosphorylation Inhibits Fyn Kinase Interaction and Increases the Decay Time of NMDAR-mediated Current
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2023-08-10
Authors: Padavattan, S., Jos, S.
PDB entry 8kdz: DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-Adenosyl-L-homocysteine and Caffeic acid phenethyl ester
Classification: VIRAL PROTEIN
Source organism: dengue virus type 3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-08-10
Authors: Bhutkar, M., Kumar, A., Tomar, S., Kumar, P.
PDB entry 8ke0: Structure of H1.2 bound to the nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-08-11
Authors: Kujirai, T., Echigoya, K., Takizawa, Y., Kurumizaka, H.
PDB entry 8ke1: PylRS C-terminus domain mutant bound with L-3-bromophenylalanine and AMPNP
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.50082 Å
Deposited: 2023-08-11
Authors: Weng, J.H., Tsai, M.D., Wang, Y.S.
PDB entry 8ke2: PylRS C-terminus domain mutant bound with L-3-trifluoromethylphenylalanine and AMPNP
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1964 Å
Deposited: 2023-08-11
Authors: Weng, J.H., Tsai, M.D., Wang, Y.S.
PDB entry 8ke3: PylRS C-terminus domain mutant bound with D-3-trifluoromethylphenylalanine and AMPNP
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89981 Å
Deposited: 2023-08-11
Authors: Weng, J.H., Tsai, M.D., Wang, Y.S.
PDB entry 8ke4: PylRS C-terminus domain mutant bound with D-3-bromophenylalanine and AMPNP
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75051 Å
Deposited: 2023-08-11
Authors: Weng, J.H., Tsai, M.D., Wang, Y.S.
PDB entry 8ke5: PylRS C-terminus domain mutant bound with D-3-chlorophenylalanine and AMPNP
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.90007 Å
Deposited: 2023-08-11
Authors: Weng, J.H., Tsai, M.D., Wang, Y.S.
PDB entry 8ke6: PylRS C-terminus domain mutant bound with L-3-chlorophenylalanine and AMPNP
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89571 Å
Deposited: 2023-08-11
Authors: Weng, J.H., Tsai, M.D., Wang, Y.S.
PDB entry 8ke7: Crystal structure of DNA binding and cleavage core of human topoisomerase 2-beta in a DNA binding-competent conformation
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-11
Authors: Chan, N.L., Liu, K.T., Chen, S.F.
PDB entry 8ke8: Crystal structure of TetR-type transcriptional factor NalC from P. aeruginosa
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-08-11
Authors: Lee, J.Y., Jeong, K.H., Ko, J.H., Son, S.B.
PDB entry 8ke9: The CBD domain of cyanophage A-1(L) short tail fiber
Classification: VIRAL PROTEIN
Source organism: unclassified Caudoviricetes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2023-08-11
Authors: Yu, R.C., Li, Q., Zhou, C.Z.
PDB entry 8kea: Cyanophage A-1(L) baseplate-initiators
Classification: VIRAL PROTEIN
Source organism: unclassified Caudoviricetes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-08-11
Authors: Yu, R.C., Li, Q., Zhou, C.Z.
PDB entry 8keb: Crystal structure of 2'-dG-III riboswitch with 2'-dG
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-11
Authors: Liao, W., Huang, L.
PDB entry 8kec: Cyanophage A-1(L) tail fiber
Classification: VIRAL PROTEIN
Source organism: unclassified Caudoviricetes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-08-11
Authors: Yu, R.C., Li, Q., Zhou, C.Z.
PDB entry 8ked: Crystal structure of 2'-dG-III riboswitch with guanine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-08-11
Authors: Liao, W., Huang, L.
PDB entry 8kee: Cyanophage A-1(L) sheath-tube
Classification: VIRAL PROTEIN
Source organism: unclassified Caudoviricetes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-08-11
Authors: Yu, R.C., Li, Q., Zhou, C.Z.
PDB entry 8kef: Cyanophage A-1(L) neck/gp7-terminator
Classification: VIRAL PROTEIN
Source organism: unclassified Caudoviricetes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-08-11
Authors: Yu, R.C., Li, Q., Zhou, C.Z.
PDB entry 8keg: Cyanophage A-1(L) neck/gp5-neck fiber
Classification: VIRAL PROTEIN
Source organism: unclassified Caudoviricetes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2023-08-11
Authors: Yu, R.C., Li, Q., Zhou, C.Z.
PDB entry 8keh: State 2 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-08-11
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kei: Cryo-EM structure of NADPH oxidase 2 in complex with p22phox and EROS
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2023-08-11
Authors: Liang, S.Y., Liu, A.J., Liu, Y.Z., Ye, R.D.
PDB entry 8kej: Monomer state of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2023-08-11
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kek: Monomer state of SARS-CoV Spike protein complexed with antibody PW5-535
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2023-08-11
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kel: Structure of DexA reveal the novel Mechanism of DNA catalysis
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli 0.1197
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2023-08-12
Authors: Liu, Y.H., Ma, B., Kang, Y., Liu, B., Li, Y.
PDB entry 8kem: PKS domains-fused AmpC EC2
Classification: PROTEIN BINDING
Source organism: Bacillus amyloliquefaciens; Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76998 Å
Deposited: 2023-08-12
Authors: Son, S.Y., Bae, D.W., Cha, S.S.
PDB entry 8ken: Structure of DexA reveal the novel mechanism of DNA catalysis
Classification: DNA BINDING PROTEIN
Source organism: Escherichia phage EcSzw_1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-08-12
Authors: Liu, Y.H., Ma, B., Kang, Y., Liu, B., Li, Y.
PDB entry 8keo: Structure of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-08-13
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kep: The local refined map of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-08-13
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8keq: State 1 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-08-13
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8ker: Structure of SARS-CoV-2 XBB Variant Spike protein complexed with broadly neutralizing antibody PW5-535
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-08-13
Authors: Sun, L., Mao, Q., Wang, Y.
PDB entry 8kes: Cryo-EM structure of HRD1-SEL1LX3-XTP3B complex in C1 symmetry
Classification: ALLERGEN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-08-13
Authors: Qian, H.W., He, J.J.
PDB entry 8ket: Cryo-EM structure of HRD1-SEL1LFL-XTP3B complex
Classification: ALLERGEN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-13
Authors: Qian, H.W., He, J.J.
PDB entry 8keu: Crystal Structures of Endo-beta-1,4-xylanase II mutant T2CT28C
Classification: HYDROLASE
Source organism: Trichoderma reesei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-08-13
Authors: Li, Z.
PDB entry 8kev: Cryo-EM structure of HRD1-SEL1L-XTP3B (state D1) complex
Classification: ALLERGEN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-08-13
Authors: Qian, H.W., He, J.J.
PDB entry 8kew: The cryo-EM structure of type1 amyloid beta 42 fibril.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-13
Authors: Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.
PDB entry 8kex: CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P, local
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-14
Authors: Yang, J., Fan, J.P., Lei, X.G.
PDB entry 8kf1: The cryo-EM structure of AV-45 bound type1 amyloid beta 42 fibril.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-15
Authors: Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.
PDB entry 8kf3: The cryo-EM structure of type3 amyloid beta 42 fibril.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-08-15
Authors: Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.
PDB entry 8kf4: The cryo-EM structure of type1 amyloid beta 42 fibril in AD2 patient.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-08-15
Authors: Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.
PDB entry 8kf5: The cryo-EM structure of type1 amyloid beta 42 fibril in AD3.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-15
Authors: Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.
PDB entry 8kf6: The cryo-EM structure of AV-45 bound type3 amyloid beta 42 fibril.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-08-15
Authors: Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.
PDB entry 8kf9: Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET in 50 mM K+ solution
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-08-15
Authors: Zhang, Y.P., Lan, W.X., Yin, S.W., Liu, Z.J., Xue, H.J., Cao, C.Y.
PDB entry 8kfa: Cryo-EM structure of HSV-1 gB with D48 Fab complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human herpesvirus 1 (strain KOS)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-08-15
Authors: Yang, J., Sun, C., Fang, X., Zeng, M., Liu, Z.
PDB entry 8kfd: Ferritin drug carrier(FDC) for encapsulated platinum (IV) prodrug for esophageal squamous cell carcinoma targeted therapy
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-15
Authors: Chen, X.
PDB entry 8kfh: Crystal structure of sperm whale myoglobin reconstituted with manganese porphycene
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-08-15
Authors: Mizohata, E., Oohora, K., Hayashi, T.
PDB entry 8kfi: Crystal structure of sperm whale myoglobin (F43A/H64I mutant) reconstituted with manganese porphycene
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2023-08-15
Authors: Mizohata, E., Oohora, K., Hayashi, T.
PDB entry 8kfj: Crystal structure of sperm whale myoglobin (F46L/H64A mutant) reconstituted with manganese porphycene
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-15
Authors: Mizohata, E., Oohora, K., Hayashi, T.
PDB entry 8kfk: Crystal Structure of Imine Reductase from Paenibacillus mucilaginosus
Classification: OXIDOREDUCTASE
Source organism: Paenibacillus mucilaginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-15
Authors: Wu, K.
PDB entry 8kfl: Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET in 100 mM Na+
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-08-15
Authors: Zhang, Y.P., Lan, W.X., Yin, S.W., Liu, Z.J., Xue, H.J., Cao, C.Y.
PDB entry 8kfo: Crystal structure of BSA in complex with B3
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2023-08-16
Authors: Chen, X., Ge, Y.H., Yang, H., Fang, B., Li, L.
PDB entry 8kfp: Solution structure of Drosophila melanogaster R2D2 dsRBD1
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: SOLUTION NMR
Deposited: 2023-08-16
Authors: Aute, R., Deshmukh, M.V.
PDB entry 8kfq: The crystal structure of EGFR(T797M/L858R) with small molecule inhibitor B6
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2023-08-16
Authors: Wu, C., Ouyang, L.
PDB entry 8kfr: Crystal structure of ZmMOC1/nicked Holliday junction/Ca2+ complex
Classification: HYDROLASE
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-16
Authors: Zhang, D., Luo, Z., Lin, Z.
PDB entry 8kfs: Crystal structure of ZmMOC1/nicked Holliday junction complex at ground state
Classification: HYDROLASE
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-08-16
Authors: Zhang, D., Luo, Z., Lin, Z.
PDB entry 8kft: Crystal structure of ZmMOC1 in complex with a nicked Holliday junction soaked in Mn2+ for 15 seconds
Classification: HYDROLASE
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-08-16
Authors: Zhang, D., Luo, Z., Lin, Z.
PDB entry 8kfu: Crystal structure of ZmMOC1 in complex with a nicked Holliday junction soaked in Mn2+ for 180 seconds
Classification: HYDROLASE
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-16
Authors: Zhang, D., Luo, Z., Lin, Z.
PDB entry 8kfv: Crystal structure of ZmMOC1 K229A in complex with a nicked Holliday junction soaked in Mn2+ for 180 seconds
Classification: HYDROLASE
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2023-08-16
Authors: Zhang, D., Luo, Z., Lin, Z.
PDB entry 8kfw: Crystal structure of ZmMOC1 K229A in complex with a nicked Holliday junction soaked in Mn2+ for 600 seconds
Classification: DNA BINDING PROTEIN
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-16
Authors: Zhang, D., Luo, Z., Lin, Z.
PDB entry 8kfx: Gi bound CCR8 complex with nonpeptide agonist LMD-009
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-08-16
Authors: Jiang, S., Lin, X., Wu, L.J., Xu, F.
PDB entry 8kfy: Gi bound CCR8 complex with nonpeptide agonist ZK 756326
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-08-16
Authors: Jiang, S., Lin, X., Wu, L.J., Xu, F.
PDB entry 8kfz: Gi bound CCR8 in ligand free state
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-16
Authors: Jiang, S., Lin, X., Wu, L.J., Xu, F.
PDB entry 8kg1: Crystal structure of the cargo cysteine desulfurase from Mycobacterium smegmatis
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-17
Authors: Liu, X., Tang, Y., Liu, Y., Ma, M., Gao, Y.
PDB entry 8kg2: Crystal structure of p97-N/D1 hexamer in complex with FAF1-UBX domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-08-17
Authors: Kang, W.
PDB entry 8kg3: Structure of THOUSAND-GRAIN WEIGHT 6 (TGW6)
Classification: HYDROLASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-08-17
Authors: Akabane, T., Suzuki, N., Matsumura, H., Yoshizawa, T., Tsuchiya, W., Katoh, E., Hirotsu, N.
PDB entry 8kg4: Crystal Structure of M- and C-Domains of the shaft pilin LrpA from Ligilactobacillus ruminis - orthorhombic form
Classification: CELL ADHESION
Source organism: Ligilactobacillus ruminis ATCC 25644
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-08-17
Authors: Prajapati, A., Palva, A., von Ossowski, I., Krishnan, V.
PDB entry 8kg5: Prefusion RSV F Bound to Lonafarnib and D25 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Enterobacteria phage T4; Homo sapiens; Human respiratory syncytial virus A (strain A2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-08-17
Authors: Yang, Q., Xue, B., Liu, F., Peng, W., Chen, X.
PDB entry 8kg6: Yeast replisome in state I
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-08-17
Authors: Dang, S., Zhai, Y., Feng, J., Yu, D., Xu, Z.
PDB entry 8kg8: Yeast replisome in state II
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å
Deposited: 2023-08-17
Authors: Dang, S., Zhai, Y., Feng, J., Yu, D., Xu, Z.
PDB entry 8kg9: Yeast replisome in state III
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.52 Å
Deposited: 2023-08-17
Authors: Dang, S., Zhai, Y., Feng, J., Yu, D., Xu, Z.
PDB entry 8kga: SlNDPS1-AtcPT4 Chimera
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana; Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.182 Å
Deposited: 2023-08-18
Authors: Suenaga-Hiromori, M., Ishii, T., Imaizumi, R., Takeshita, K., Yanai, T., Matsuura, H., Sakai, N., Yamaguchi, H., Yanbe, F., Waki, T., Tozawa, Y., Miyagi-Inoue, Y., Yamamoto, M., Kataoka, K., Nakayama, T., Yamashita, S., Takahashi, S.
PDB entry 8kgb: SlNDPS1-AtcPT4 Chimera complexed with GSPP, Mg2+, and IPP
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana; Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-08-18
Authors: Suenaga-Hiromori, M., Ishii, T., Imaizumi, R., Takeshita, K., Yanai, T., Matsuura, H., Sakai, N., Yamaguchi, H., Yanbe, F., Waki, T., Tozawa, Y., Miyagi-Inoue, Y., Yamamoto, M., Kataoka, K., Nakayama, T., Yamashita, S., Takahashi, S.
PDB entry 8kgc: Cryo-EM structure of human NADK tetramer
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-08-18
Authors: Zhang, P., Hu, M., Liu, Z.
PDB entry 8kge: Dimeric tail tube protein gpVs of bacteriophage lambda
Classification: VIRAL PROTEIN
Source organism: Escherichia phage lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-08-18
Authors: Wang, J.W.
PDB entry 8kgf: Structure of AmCas12a with crRNA
Classification: DNA BINDING PROTEIN/RNA
Source organism: Anaeroglobus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-18
Authors: Feng, Y., Zhang, X., Shi, J., Ma, P., Tang, J., Huang, X.
PDB entry 8kgg: LPS-bound P2Y10 in complex with G13
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-08-19
Authors: He, Y., Yin, Y.
PDB entry 8kgi: Molecular mechanism of prostaglandin transporter SLCO2A1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-19
Authors: Li, Y.H., Qu, Q.H., Zhu, Z.N., Chao, Y.L., Zhou, Z.X.
PDB entry 8kgk: Cryo-EM structure of the GPR61-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-08-19
Authors: Nie, Y., Qiu, Z., Zheng, S.
PDB entry 8kgl: Structure of African swine fever virus topoisomerase II
Classification: VIRAL PROTEIN
Source organism: African swine fever virus LIS57
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-08-19
Authors: Cong, J., Xin, Y., Li, X., Chen, Y.
PDB entry 8kgm: Structure of African swine fever virus topoisomerase II in complex with dsDNA
Classification: VIRAL PROTEIN/DNA
Source organism: African swine fever virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2023-08-19
Authors: Cong, J., Xin, Y., Li, X., Chen, Y.
PDB entry 8kgn: Structure of African swine fever virus topoisomerase II in complex with dsDNA
Classification: VIRAL PROTEIN/DNA
Source organism: African swine fever virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2023-08-19
Authors: Cong, J., Xin, Y., Li, X., Chen, Y.
PDB entry 8kgo: Structure of African swine fever virus topoisomerase II in complex with dsDNA
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-19
Authors: Chen, Y., Xin, Y., Li, X., Cong, J.
PDB entry 8kgp: Structure of African swine fever virus topoisomerase II in complex with dsDNA
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-19
Authors: Cong, J., Xin, Y., Li, X., Chen, Y.