LiteFold/PDB huggingface dataset:
PDB entry 8frd: Mouse acidic mammalian chitinase, catalytic domain in complex with N,N'-diacetylchitobiose at pH 5.25
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-01-06
Authors: Diaz, R.E., Fraser, J.S.
PDB entry 8fre: Designed loop protein RBL4
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-06
Authors: Jude, K.M., Jiang, H., Baker, D., Garcia, K.C.
PDB entry 8frf: Homodimeric designed loop protein RBL7_C2_3
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-01-06
Authors: Jude, K.M., Jiang, H., Baker, D., Garcia, K.C.
PDB entry 8frg: Mouse acidic mammalian chitinase, catalytic domain in complex with N,N'-diacetylchitobiose at pH 5.43
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-01-06
Authors: Diaz, R.E., Fraser, J.S.
PDB entry 8frh: Apo structure of D59C mutant of a melibiose transporter
Classification: MEMBRANE PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2023-01-06
Authors: Guan, L., Hariharan, P.
PDB entry 8fri: LSD1-CoREST in complex with AW4, short soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-01-07
Authors: Caroli, J., Mattevi, A.
PDB entry 8frj: Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SGC0946
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-01-07
Authors: Kottur, J., Aggarwal, A.K.
PDB entry 8frk: Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SGC8158
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-01-07
Authors: Kottur, J., Aggarwal, A.K.
PDB entry 8frl: Acinetobacter baylyi LptB2FG bound to lipopolysaccharide and a macrocyclic peptide
Classification: LIPID TRANSPORT
Source organism: Acinetobacter baylyi ADP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-01-07
Authors: Pahil, K.S., Gilman, M.S.A., Kruse, A.C., Kahne, D.
PDB entry 8frm: Acinetobacter baylyi LptB2FG bound to lipopolysaccharide.
Classification: LIPID TRANSPORT
Source organism: Acinetobacter baylyi ADP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-01-07
Authors: Pahil, K.S., Gilman, M.S.A., Kruse, A.C., Kahne, D.
PDB entry 8frn: Acinetobacter baylyi LptB2FG bound to lipopolysaccharide and Zosurabalpin
Classification: LIPID TRANSPORT
Source organism: Acinetobacter baylyi ADP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-01-07
Authors: Pahil, K.S., Gilman, M.S.A., Kruse, A.C., Kahne, D.
PDB entry 8fro: Acinetobacter baylyi LptB2FG bound to lipopolysaccharide and a macrocyclic peptide
Classification: LIPID TRANSPORT
Source organism: Acinetobacter baylyi ADP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-01-07
Authors: Pahil, K.S., Gilman, M.S.A., Kruse, A.C., Kahne, D.
PDB entry 8frp: Acinetobacter baylyi LptB2FGC
Classification: LIPID TRANSPORT
Source organism: Acinetobacter baylyi ADP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-01-07
Authors: Pahil, K.S., Gilman, M.S.A., Kruse, A.C., Kahne, D.
PDB entry 8frq: LSD1-CoREST in complex with T14, long soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-01-08
Authors: Caroli, J., Mattevi, A.
PDB entry 8frr: Wild-type myocilin olfactomedin domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-01-08
Authors: Ma, M.T., Lieberman, R.L., Huard, D.J.E.
PDB entry 8frs: Pseudomonas phage E217 5-fold vertex (capsid and decorating proteins)
Classification: VIRUS
Source organism: Pseudomonas phage vB_PaeM_E217
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2023-01-08
Authors: Li, F., Cingolani, G., Hou, C.
PDB entry 8frt: X-ray crystal structure of the N-terminal region from HCMV US11 binding to HLA-A*02:01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human cytomegalovirus (strain AD169)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-08
Authors: Watson, G.M., Berry, R., Rossjohn, J.
PDB entry 8fru: 60S subunit of the Giardia lamblia 80S ribosome
Classification: RIBOSOME
Source organism: Giardia intestinalis assemblage A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2023-01-08
Authors: Eiler, D.R., Wimberly, B.T., Bilodeau, D.Y., Rissland, O.S., Kieft, J.S.
PDB entry 8frv: LSD1-CoREST in complex with T17, short soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-01-09
Authors: Caroli, J., Mattevi, A.
PDB entry 8frw: Full-length mouse 5-HT3A receptor in complex with ALB148471, pre-activated
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-01-09
Authors: Felt, K.C., Chakrapani, S.
PDB entry 8frx: Full-length mouse 5-HT3A receptor in complex with SMP100, pre-activated
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-09
Authors: Felt, K.C., Chakrapani, S.
PDB entry 8fry: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-09
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8frz: Full-length mouse 5-HT3A receptor in complex with serotonin, pre-activated
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-01-09
Authors: Felt, K.C., Chakrapani, S.
PDB entry 8fs0: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-09
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fs1: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11a (YD905)
Classification: TRANSFERASE/DNA/INHIBITOR
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-01-09
Authors: Zhou, J., Horton, J.R., Cheng, X.
PDB entry 8fs2: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11b (YD907)
Classification: TRANSFERASE/DNA/INHIBITOR
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-01-09
Authors: Zhou, J., Horton, J.R., Cheng, X.
PDB entry 8fs3: Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 1 (open 9-1-1 and shoulder bound DNA only)
Classification: CELL CYCLE/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-01-09
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 8fs4: Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 2 (open 9-1-1 ring and flexibly bound chamber DNA)
Classification: CELL CYCLE/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-01-09
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 8fs5: Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 3 (open 9-1-1 and stably bound chamber DNA)
Classification: CELL CYCLE/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-01-09
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 8fs6: Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 4 (partially closed 9-1-1 and stably bound chamber DNA)
Classification: CELL CYCLE/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-09
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 8fs7: Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 5 (closed 9-1-1 and stably bound chamber DNA)
Classification: CELL CYCLE/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-01-09
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 8fs8: Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 5-nt gapped DNA (9-1-1 encircling fully bound DNA)
Classification: CELL CYCLE/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-01-09
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 8fs9: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-09
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsa: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-09
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsb: Full-length mouse 5-HT3A receptor in complex with serotonin, open-like
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-01-09
Authors: Felt, K.C., Chakrapani, S.
PDB entry 8fsc: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-09
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsd: P130R mutant of soybean SHMT8 in complex with PLP-glycine and formylTHF
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-01-09
Authors: Beamer, L.J., Korasick, D.A.
PDB entry 8fse: Crystal structure of integrin beta-2 tail bound to the FERM-folded talin head domain
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-09
Authors: Wu, J., Gao, T.
PDB entry 8fsf: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-09
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsg: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-09
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsh: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-09
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsi: The structure of a crystallizable variant of E. coli pyruvate formate-lyase activating enzyme bound to SAM
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-01-10
Authors: Moody, J.D., Galambas, A., Lawrence, C.M., Broderick, J.B.
PDB entry 8fsj: Cryo-EM structure of engineered hepatitis C virus E1E2 ectodomain in complex with antibodies AR4A, HEPC74, and IGH520
Classification: VIRAL PROTEIN
Source organism: Hepacivirus C; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2023-01-10
Authors: Metcalf, M.C., Ofek, G.
PDB entry 8fsk: LSD1-CoREST in complex with T18, short soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2023-01-10
Authors: Caroli, J., Mattevi, A.
PDB entry 8fsl: Human Mesothelin bound to a neutralizing VH domain antibody
Classification: ANTITUMOR PROTEIN
Source organism: Escherichia coli; Insect expression vector pBlueBacmsGCA1His
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-01-10
Authors: Calero, G.
PDB entry 8fsm: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-10
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsn: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-10
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fso: Crystal structure of integrin beta-6 tail bound to the FERM-folded talin head domain
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-01-10
Authors: Wu, J., Gao, T.
PDB entry 8fsp: Full-length mouse 5-HT3A receptor in complex with SMP100, open-like
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2023-01-10
Authors: Felt, K.C., Chakrapani, S.
PDB entry 8fsq: Complex Structure of YejA with Microcin C7
Classification: PEPTIDE BINDING PROTEIN/ANTIBIOTIC
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-01-11
Authors: Nair, S.K., Dong, S.-H.
PDB entry 8fsr: Complex Structure of YejA with fMccA
Classification: TRANSPORT PROTEIN/ANTIBIOTIC
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-01-11
Authors: Nair, S.K., Dong, S.-H.
PDB entry 8fss: Complex Structure of YejA-S481A with Microcin C7
Classification: PEPTIDE BINDING PROTEIN/ANTIBIOTIC
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-11
Authors: Nair, S.K., Dong, S.-H.
PDB entry 8fst: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsu: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsv: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsw: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsx: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsy: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fsz: Full-length mouse 5-HT3A receptor in complex with ALB148471, open-like
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2023-01-11
Authors: Felt, K.C., Chakrapani, S.
PDB entry 8ft0: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8ft1: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8ft2: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8ft3: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8ft4: Multicrystal structure of Na+, leucine-bound LeuT determined at 5 keV
Classification: TRANSPORT PROTEIN
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2023-01-11
Authors: Karasawa, A., Liu, H., Quick, M., Hendrickson, A.H., Liu, Q.
PDB entry 8ft5: Crystal structure of LeuT soaked with Crown-5
Classification: TRANSPORT PROTEIN
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2023-01-11
Authors: Karasawa, A., Liu, H., Quick, M., Hendrickson, A.H., Liu, Q.
PDB entry 8ft6: The von Willebrand factor A domain of human capillary morphogenesis gene II, flexibly fused to the 1TEL crystallization chaperone, Ala-Ala linker variant, SUMO tag-free preparation.
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-01-11
Authors: Gajjar, P.L., Litchfield, C.M., Callahan, M., Redd, N., Doukov, T., Moody, J.D.
PDB entry 8ft7: Crystal structure of SAH bound protein arginine N-methyltransferase 1 (PRMT1) from Naegleria fowleri
Classification: TRANSFERASE
Source organism: Naegleria fowleri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-01-11
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8ft8: The von Willebrand factor A domain of human capillary morphogenesis gene II, flexibly fused to the 1TEL crystallization chaperone, Thr-Val linker variant, SUMO tag-free preparation
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Gajjar, P.L., Litchfield, C.M., Callahan, M., Redd, N., Doukov, T., Moody, J.D.
PDB entry 8ft9: Crystal structure of a new antigen receptor variable domain from nurse sharks
Classification: ANTITOXIN
Source organism: Ginglymostoma cirratum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-01-11
Authors: Yerabham, A.S.K., Hsieh, C.M., Fu, Y., Bou-Nader, C., Cachau, R., Zhang, J., Ho, M.
PDB entry 8fta: Crystal Structure of the second bromodomain of human Polybromo-1 (PB1) in complex with compound 16
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-01-11
Authors: Nunez, R., Smith, B.C.
PDB entry 8ftb: Crystal structure of integrin beta-2 tail bound to the FERM-folded talin head domain with a K306Q mutation
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-01-11
Authors: Wu, J., Gao, T.
PDB entry 8ftc: Crystal structure of main protease of SARS-CoV-2 complexed with inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-11
Authors: Chen, P., Khan, M.B., Lu, J., Arutyunova, E., Young, H.S., Lemieux, M.J.
PDB entry 8ftd: Structure of Escherichia coli CedA in complex with transcription initiation complex
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-01-11
Authors: Liu, M., Vassyliev, N., Nudler, E.
PDB entry 8fte: CryoEM strucutre of 22-mer RBM2 of the Salmonella MS-ring
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-01-12
Authors: Singh, P.S., Nakagawa, T., Cecchini, G., Iverson, T.M.
PDB entry 8ftf: CryoEM strucutre of 33-mer RBM3 of the Salmonella MS-ring
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-12
Authors: Singh, P.S., Nakagawa, T., Cecchini, G., Iverson, T.M.
PDB entry 8ftg: Biophysical and Structural Characterization of an Anti-Caffeine VHH Antibody
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2023-01-12
Authors: Horn, J.R., Smith, C.A., Sonneson, G.J., Walter, R.
PDB entry 8fth: Chaetomium thermophilum SETX - NPPC internal deletion
Classification: TRANSCRIPTION
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-01-12
Authors: Williams, R.S., Appel, C.D.
PDB entry 8fti: Cryo-EM structure of the Cas13bt3-crRNA-target RNA ternary complex in activated state
Classification: RNA BINDING PROTEIN/RNA
Source organism: Planctomycetota bacterium; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-01-12
Authors: Gao, Y., Deng, X.
PDB entry 8ftj: Crystal structure of human NEIL1 (P2G (242K) C(delta)100) glycosylase bound to DNA duplex containing urea
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-01-12
Authors: Tomar, R., Sharma, P., Harp, J.M., Egli, M., Stone, M.P.
PDB entry 8ftk: Chaetomium thermophilum SETX (Full-length)
Classification: TRANSCRIPTION
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.56 Å
Deposited: 2023-01-12
Authors: Williams, R.S., Appel, C.D.
PDB entry 8ftl: Crystal structure of the SARS-CoV-2 (COVID-19) main protease (Mpro) in complex with inhibitor Jun89-3-C1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-01-12
Authors: Lewandowski, E.M., Butler, S.G., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8ftm: Setx-ssRNA-ADP-SO4 complex
Classification: TRANSCRIPTION/RNA
Source organism: Chaetomium thermophilum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2023-01-12
Authors: Williams, R.S., Appel, C.D.
PDB entry 8ftn: E. coli ArnA dehydrogenase domain mutant - N492A
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-01-12
Authors: Sousa, M.C., Mitchell, M.E.
PDB entry 8fto: E. coli 70S ribosome with an improved MS2 tag inserted in H98
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.85 Å
Deposited: 2023-01-12
Authors: Nissley, A.J., Cate, J.H.D.
PDB entry 8ftp: FphH, Staphylococcus aureus fluorophosphonate-binding serine hydrolases H, apo form
Classification: HYDROLASE
Source organism: Staphylococcus aureus USA300-CA-263
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-01-12
Authors: Fellner, M.
PDB entry 8ftq: Crystal structure of hRpn13 Pru domain in complex with Ubiquitin and XL44
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-01-13
Authors: Walters, K.J., Lu, X., Chandravanshi, M.
PDB entry 8ftr: SgvM methyltransferase with MTA and alpha-ketoleucine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces griseoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2023-01-13
Authors: Kuzelka, K., Nair, S.K.
PDB entry 8fts: SgvM methyltransferase with SAH and alpha-ketoleucine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces griseoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-13
Authors: Kuzelka, K., Nair, S.K.
PDB entry 8ftt: Crystal structure of a glycosylase specific nanobody
Classification: PROTEIN BINDING
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-01-13
Authors: Thompson, M.K., Prakash, A.
PDB entry 8ftu: Crystal structure of the SNARE Use1 bound to Dsl1 complex subunits Sec39 and Dsl1, Revised Use1 structure
Classification: TRANSPORT PROTEIN
Source organism: Kluyveromyces lactis NRRL Y-1140
Experimental method: X-RAY DIFFRACTION
Resolution: 5.73 Å
Deposited: 2023-01-13
Authors: Travis, S.M., Jeffrey, P.D., Hughson, F.M.
PDB entry 8ftv: SgvM methyltransferase triple variant (M144V/F329V/T331A) with SAH and 2-oxo-4-phenylbutanoic acid
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces griseoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2023-01-13
Authors: Kuzelka, K., Nair, S.K.
PDB entry 8ftw: FliT-FliJ fusion complex
Classification: CHAPERONE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: SOLUTION NMR
Deposited: 2023-01-13
Authors: Rossi, P., Kalodimos, C.G.
PDB entry 8ftx: FlgN-FliJ fusion complex
Classification: CHAPERONE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: SOLUTION NMR
Deposited: 2023-01-13
Authors: Rossi, P., Kalodimos, C.G.
PDB entry 8fty: Crystal structure of the carotenoid isomerooxygenase, NinaB
Classification: OXIDOREDUCTASE
Source organism: Trichoplusia ni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-01-14
Authors: Kiser, P.D., Solano, Y.J.
PDB entry 8fu2: Crystal structure of T151G CAO1 in complex with piceatannol
Classification: OXIDOREDUCTASE/SUBSTRATE
Source organism: Neurospora crassa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-16
Authors: Kiser, P.D.
PDB entry 8fu3: Structure Of Respiratory Syncytial Virus Polymerase with Novel Non-Nucleoside Inhibitor
Classification: VIRAL PROTEIN
Source organism: Human respiratory syncytial virus A2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-01-16
Authors: Yu, X., Abeywickrema, P., Bonneux, B., Behera, I., Jacoby, E., Fung, A., Adhikary, S., Bhaumik, A., Carbajo, R.J., Bruyn, S.D., Miller, R., Patrick, A., Pham, Q., Piassek, M., Verheyen, N., Shareef, A., Sutto-Ortiz, P., Ysebaert, N., Vlijmen, H.V., Jonckers, T.H.M., Herschke, F., McLellan, J.S., Decroly, E., Fearns, R., Grosse, S., Roymans, D., Sharma, S., Rigaux, P., Jin, Z.
PDB entry 8fu4: HCMV US11 peptide binding to HLA-A*02:01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-16
Authors: Watson, G.M., Berry, R., Littler, D.R., Rossjohn, J.
PDB entry 8fu5: Crystal structure of Fe-CAO1 in complex with piceatannol
Classification: OXIDOREDUCTASE/SUBSTRATE
Source organism: Neurospora crassa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-01-16
Authors: Kiser, P.D.
PDB entry 8fu6: GCGR-Gs complex in the presence of RAMP2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-16
Authors: Krishna Kumar, K., O'Brien, E.S., Wang, H., Montabana, E., Kobilka, B.K.
PDB entry 8fu7: Structure of Covid Spike variant deltaN135 in fully closed form
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-01-16
Authors: Yu, X., Juraszek, J., Rutten, L., Bakkers, M.J.G., Blokland, S., Van den Broek, N.J.F., Verwilligen, A.Y.W., Abeywickrema, P., Vingerhoets, J., Neefs, J., Bakhash, S.A.M., Roychoudhury, P., Greninger, A., Sharma, S., Langedijk, J.P.M.
PDB entry 8fu8: Structure of Covid Spike variant deltaN135 with one erect RBD
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-01-16
Authors: Yu, X., Juraszek, J., Rutten, L., Bakkers, M.J.G., Blokland, S., Van den Broek, N.J.F., Verwilligen, A.Y.W., Abeywickrema, P., Vingerhoets, J., Neefs, J., Bakhash, S.A.M., Roychoudhury, P., Greninger, A., Sharma, S., Langedijk, J.P.M.
PDB entry 8fu9: Structure of Covid Spike variant deltaN25 with one erect RBD
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-01-16
Authors: Yu, X., Juraszek, J., Rutten, L., Bakkers, M.J.G., Blokland, S., Van den Broek, N.J.F., Verwilligen, A.Y.W., Abeywickrema, P., Vingerhoets, J., Neefs, J., Bakhash, S.A.M., Roychoudhury, P., Greninger, A., Sharma, S., Langedijk, J.P.M.
PDB entry 8fua: Crystal structure of mouse Importin alpha in complex with Hendra virus matrix protein NLS1
Classification: TRANSPORT PROTEIN
Source organism: Hendra virus horse/Australia/Hendra/1994; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-17
Authors: Donnelly, C.M., Basler, C.F., Scott, C., Forwood, J.K.
PDB entry 8fub: Crystal structure of human Importin alpha 3 in complex with Hendra virus matrix protein NLS1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-01-17
Authors: Donnelly, C.M., Basler, C.F., Scott, C., Forwood, J.K.
PDB entry 8fuc: Crystal structure of mouse Importin alpha in complex with Hendra virus matrix protein minor site NLS2
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli BL21(DE3); Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-01-17
Authors: Donnelly, C.M., Basler, C.F., Scott, C., Forwood, J.K.
PDB entry 8fud: Crystal structure of Vps29 in complex with Chaetomium thermophilum Vps5 (71 to 80)
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-01-17
Authors: Chen, K.-E., Collins, B.
PDB entry 8fuf: Crystal structure of human O-GlcNAc transferase (OGT) in complex with an exosite-binding peptide (ZNF831) and UDP-GlcNAc
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.69 Å
Deposited: 2023-01-17
Authors: Xie, J., Jiang, J.
PDB entry 8fug: Alzheimer's disease paired-helical filament in complex with PET tracer GTP-1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-17
Authors: Merz, G.E., Tse, E., Southworth, D.R.
PDB entry 8fuh: Rubrerythrin from B. pseudomallei: apo form
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.852 Å
Deposited: 2023-01-17
Authors: Monteiro, D.C.F., Snell, M.E., Budziszewski, G.R., Bowman, S.E.J.
PDB entry 8fui: HIV-1 wild type protease with GRL-02519A, with N-(2,5-dimethylphenyl)-4-(pyridin-3-yl)pyrimidin-2-amine as P2-P3 group
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-01-17
Authors: Wang, Y.-F., Wong-Sam, A.E., Ghosh, A.K., Weber, I.T.
PDB entry 8fuj: HIV-1 wild type protease with GRL-03419A, with N-(2,5-dimethylphenyl)-4-(pyridin-3-yl)pyrimidin-2-amine as P2-P3 group and 3,5-difluorophenylmethyl as the P1 group
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2023-01-17
Authors: Wang, Y.-F., Agniswamy, J., Ghosh, A.K., Weber, I.T.
PDB entry 8fuk: V. cholerae TniQ-Cascade complex with Type III-B crRNA
Classification: ANTIVIRAL PROTEIN/RNA
Source organism: metagenome; Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-01-17
Authors: Chou, C.W., Finkelstein, I.J., Hu, K.
PDB entry 8ful: Heterologous AibH1H2 purified from Lysogeny broth
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus wratislaviensis NBRC 100605
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-01-17
Authors: Powell, M.M., Rittle, J.
PDB entry 8fum: AibH1H2 metalated with Fe in the presence of Tris
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus wratislaviensis NBRC 100605
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-01-17
Authors: Powell, M.M., Rittle, J.
PDB entry 8fun: Enzymatically Active, Mn/Fe Metallated Form of AibH1H2
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus wratislaviensis NBRC 100605
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2023-01-17
Authors: Powell, M.M., Rittle, J.
PDB entry 8fuo: Fe-bound AibH1H2
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus wratislaviensis NBRC 100605
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-01-17
Authors: Powell, M.M., Rittle, J.
PDB entry 8fup: Bromodomain of CBP liganded with BMS-536924 and CCS-1477
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-01-18
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fuq: Crystal structure of rabies virus (strain CVS-11) P3 dimerization domain
Classification: VIRAL PROTEIN
Source organism: Lyssavirus rabies
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-18
Authors: Donnelly, C.M., Cross, E.M., Forwood, J.K.
PDB entry 8fur: Crystal structure of human IDO1 with compound 11
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.285 Å
Deposited: 2023-01-18
Authors: Critton, D.A., Lewis, H.A.
PDB entry 8fut: Crystal structure of Xenopus laevis arrestin 1 - P3121 crystal form
Classification: SIGNALING PROTEIN
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-01-18
Authors: Salom, D., Barnes, C.L., Calvert, P.D., Kiser, P.D.
PDB entry 8fuu: Crystal structure of Xenopus laevis arrestin 1 - P3221 crystal form
Classification: SIGNALING PROTEIN
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-01-18
Authors: Salom, D., Barnes, C.L., Calvert, P.D., Kiser, P.D.
PDB entry 8fuv: Pseudomonas phage E217 extended sheath and tail tube
Classification: VIRUS
Source organism: Pseudomonas phage vB_PaeM_E217
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-18
Authors: Li, F., Cingolani, G., Hou, C.
PDB entry 8fuw: KpsC D160N Kdo adduct
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-18
Authors: Kimber, M.S., Doyle, L., Whitfield, C.
PDB entry 8fux: KpsC D160C ternary complex
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-01-18
Authors: Kimber, M.S., Doyle, L., Whitfield, C.
PDB entry 8fuy: Glucose-6-phosphate 1-dehydrogenase (G6PDH) from Crithidia fasciculata (citrate bound)
Classification: OXIDOREDUCTASE
Source organism: Crithidia fasciculata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-01-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8fuz: Human IMPDH2 mutant - L245P, treated with GTP, ATP, IMP, and NAD+; filament assembly interface reconstruction
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-01-18
Authors: O'Neill, A.G., Kollman, J.M.
PDB entry 8fv0: SpeG spermidine N-acetyltransferase from Staphylococcus aureus in complex with spermine
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-01-18
Authors: Tsimbalyuk, S., Forwood, J.K.
PDB entry 8fv1: SpeG spermidine N-acetyltransferase from Staphylococcus aureus in complex with spermine
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-01-18
Authors: Tsimbalyuk, S., Forwood, J.K.
PDB entry 8fv2: Bromodomain of CBP liganded with CCS-1477
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-01-18
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fv3: EGFR(T790M/V948R) in complex with compound 1 (LN4503)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-01-18
Authors: Ogboo, B.C., Heppner, D.E.
PDB entry 8fv4: EGFR(T790M/V948R) in complex with compound 2 (LN5993)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-18
Authors: Ogboo, B.C., Beyett, T.S., Eck, M.J., Heppner, D.E.
PDB entry 8fv5: Representation of 16-mer phiPA3 PhuN Lattice, p2
Classification: VIRAL PROTEIN
Source organism: Escherichia coli (strain K12); Pseudomonas phage PhiPA3
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.21 Å
Deposited: 2023-01-18
Authors: Nieweglowska, E.S., Brilot, A.F., Mendez-Moran, M., Kokontis, C., Baek, M., Li, J., Cheng, Y., Baker, D., Bondy-Denomy, J., Agard, D.A.
PDB entry 8fv6: E coli. CTP synthase in complex with dF-dCTP
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fv7: E coli. CTP synthase in complex with dF-dCTP + ATP
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fv8: E coli. CTP synthase in complex with dF-dCTP + ADP
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fv9: E coli. CTP synthase in complex with F-dCTP
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.991 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fva: E coli. CTP synthase in complex with F-araCTP
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fvb: E coli. CTP synthase in complex with CTP
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fvc: E coli. CTP synthase in complex with dF-dCTP (potassium malonate + 5 mM MgCl2)
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.281 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fvd: E coli. CTP synthase in complex with dF-dCTP (potassium malonate + 100 mM MgCl2)
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fve: E coli. CTP synthase in complex with CTP (potassium malonate + 100 mM MgCl2)
Classification: CYTOSOLIC PROTEIN, LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-01-18
Authors: Holyoak, T., McLeod, M.J., Tran, N.
PDB entry 8fvf: Bromodomain of EP300 liganded with CCS-1477
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-01-18
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fvg: Pseudomonas phage E217 contracted sheath
Classification: VIRUS
Source organism: Pseudomonas phage vB_PaeM_E217
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-18
Authors: Li, F., Cingolani, G., Hou, C.
PDB entry 8fvh: Pseudomonas phage E217 neck (portal, head-to-tail connector, collar and gateway proteins)
Classification: VIRUS
Source organism: Pseudomonas phage vB_PaeM_E217
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-18
Authors: Li, F., Cingolani, G., Hou, C.
PDB entry 8fvi: Human APOBEC3H bound to HIV-1 Vif in complex with CBF-beta, ELOB, ELOC, and CUL5
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli; Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2023-01-19
Authors: Ito, F., Alvarez-Cabrera, A.L., Zhou, Z.H., Chen, X.S.
PDB entry 8fvj: Dimeric form of HIV-1 Vif in complex with human CBF-beta, ELOB, ELOC, and CUL5
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2023-01-19
Authors: Ito, F., Alvarez-Cabrera, A.L., Zhou, Z.H., Chen, X.S.
PDB entry 8fvk: First bromodomain of BRD4 liganded with CCS-1477
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-01-19
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fvl: PCSK9 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.961 Å
Deposited: 2023-01-19
Authors: Xu, M., Chopra, R.
PDB entry 8fvm: PCSK9 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.852 Å
Deposited: 2023-01-19
Authors: Xu, M., Chopra, R.
PDB entry 8fvn: PCSK9 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2023-01-19
Authors: Xu, M., Chopra, R.
PDB entry 8fvo: PCSK9 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.652 Å
Deposited: 2023-01-19
Authors: Xu, M., Chopra, R.
PDB entry 8fvp: PCSK9 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.602 Å
Deposited: 2023-01-19
Authors: Xu, M., Chopra, R.
PDB entry 8fvq: PCSK9 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2023-01-19
Authors: Xu, M., Chopra, R.
PDB entry 8fvr: CryoEM structure of E.coli transcription elongation complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2023-01-19
Authors: Duan, W., Serganov, A.
PDB entry 8fvs: Bromodomain of CBP liganded with CCS1477int
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-01-19
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fvt: Multi-state design of two-state switchable hinge proteins
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2023-01-19
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 8fvu: Cryo-EM structure of human Needle/NAIP/NLRC4 (R288A)
Classification: IMMUNE SYSTEM
Source organism: Bacillus anthracis; Burkholderia; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-01-19
Authors: Matico, R.E., Yu, X., Miller, R., Somani, S., Ricketts, M.D., Kumar, N., Steele, R.A., Medley, Q., Berger, S., Faustin, B., Sharma, S.
PDB entry 8fvv: Rubrerythrin from B. pseudomallei: iron-bound
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-01-19
Authors: Monteiro, D.C.F., Snell, M.E., Budziszewski, G.R., Bowman, S.E.J.
PDB entry 8fvw: CryoEM structure of E.coli transcription elongation complex bound to ppGpp
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-01-19
Authors: Duan, W., Serganov, A.
PDB entry 8fvx: Histone from Bdellovibrio bacteriovorus
Classification: DNA BINDING PROTEIN
Source organism: Bdellovibrio bacteriovorus HD100
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-19
Authors: Laursen, S.P., Luger, K.
PDB entry 8fvy: 40S subunit of the Giardia lamblia 80S ribosome
Classification: RIBOSOME
Source organism: Giardia intestinalis assemblage A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-01-20
Authors: Eiler, D.R., Wimberly, B.T., Bilodeau, D.Y., Rissland, O.S., Kieft, J.S.
PDB entry 8fvz: PiPT Y150A
Classification: TRANSPORT PROTEIN
Source organism: Serendipita indica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-01-20
Authors: Gupta, M., Finer-Moore, J., Stroud, R.M.
PDB entry 8fw0: MtrR from Neisseria gonorrhoeae bound to beta-Estradiol
Classification: TRANSCRIPTION
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2023-01-20
Authors: Hooks, G.H., Brennan, R.G.
PDB entry 8fw1: Gluconobacter Ene-Reductase (GluER) mutant - PagER
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-01-20
Authors: Dahagam, S., Page, C., Patterson, M.G., Hyster, T.K.
PDB entry 8fw2: Cryo-EM structure of full-length human NLRC4 inflammasome with C11 symmetry
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-01-20
Authors: Matico, R.E., Yu, X., Miller, R., Somani, S., Ricketts, M.D., Kumar, N., Steele, R.A., Medley, Q., Berger, S., Faustin, B., Sharma, S.
PDB entry 8fw3: MtrR from Neisseria gonorrhoeae bound to Testosterone
Classification: TRANSCRIPTION
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2023-01-20
Authors: Hooks, G.H., Brennan, R.G.
PDB entry 8fw4: Crystal structure of the adenosylcobalamin riboswitch holo conformation in absence of ligand
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.3 Å
Deposited: 2023-01-20
Authors: Stagno, J.R., Wang, Y.-X.
PDB entry 8fw5: Chimeric HsGATOR1-SpGtr-SpLam complex
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-01-20
Authors: Tettoni, S.D., Egri, S.B., Doxsey, D.D., Ouch, C., Chang, J., Song, K., Xu, C., Shen, K.