LiteFold/PDB huggingface dataset:
PDB entry 9nd2: [1,8,10-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (1,8,10) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.61 Å
Deposited: 2025-02-17
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nd3: JAK2 pseudokinase domain in complex with diaminotriazole inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-02-17
Authors: Primi, M.C., Eck, M.J.
PDB entry 9nd4: [0,8,11-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,8,11) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.3 Å
Deposited: 2025-02-17
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nd5: JAK2 pseudokinase domain in complex with diaminotriazole covalent inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-17
Authors: Primi, M.C., Eck, M.J.
PDB entry 9nd6: [T:Ag+/Hg2+:T--(pH8-pH9.5; 50s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8 and soaked in pH 9.5 Ag/Hg for 50s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.89 Å
Deposited: 2025-02-17
Authors: Lu, B., Vecchioni, S.
PDB entry 9nd7: [T:Ag+/Hg2+:T--(pH8-pH9.5; 75s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8 and soaked in pH 9.5 for 75s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.7 Å
Deposited: 2025-02-17
Authors: Lu, B., Vecchioni, S.
PDB entry 9nd8: [T:Ag+/Hg2+:T--(pH8-pH9.5; 95s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8 and soaked in pH 9.5 Ag/Hg for 95s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.38 Å
Deposited: 2025-02-17
Authors: Lu, B., Vecchioni, S.
PDB entry 9nd9: [T:Ag+/Hg2+:T--(pH11-pH9.5; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8 and soaked in pH 9.5 Ag/Hg for 5s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.66 Å
Deposited: 2025-02-17
Authors: Lu, B., Vecchioni, S.
PDB entry 9nda: The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with amenamevir
Classification: REPLICATION, TRANSFERASE
Source organism: Herpesviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-17
Authors: Yao, Q., Yu, X.
PDB entry 9ndb: [4,7,8-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,7,8) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.07 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndc: [3,14,12-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (3,14,12) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.34 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndd: RNA scaffold attached to 8-oxoguanine riboswitch aptamer, combined core plus aptamer
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-02-18
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9nde: [4,7,9P-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,7,9) base pairs, 1 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.11 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndf: [5,8,7,P-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (5,8,7) base pairs, 1 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.01 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndh: [4,8,8,P-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,8,8) base pairs, 1 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.78 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndi: [3,8,9,P-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (3,8,9) base pairs, 1 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.39 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndj: Cryo-EM structure of the endogenous ClpP1/ClpP2 heterocomplex from Pseudomonas aeruginosa bound to the AAA+ ClpX unfoldase.
Classification: CHAPERONE
Source organism: Escherichia coli; Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-02-18
Authors: Ghanbarpour, A., Zhang, J.J., Baker, T.A., Davis, J.H., Sauer, R.T.
PDB entry 9ndk: [2,8,10,P-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (2,8,10) base pairs, 1 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.49 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndl: Crystal Structure of C2-B-alpha20
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-02-18
Authors: Bera, A.K., Wang, S., Baker, D.
PDB entry 9ndn: [0,8,11,P-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,8,11) base pairs, 2 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.41 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndo: [2,8,9,P-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (2,8,9) base pairs, 2 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.8 Å
Deposited: 2025-02-18
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ndp: Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-02-18
Authors: Zdancewicz, S., Jomaa, A.
PDB entry 9ndq: The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA and ATP-gamma-S
Classification: REPLICATION, TRANSFERASE
Source organism: Herpesviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-18
Authors: Yao, Q., Yu, X.
PDB entry 9ndr: The 1.22 Angstrom crystal structure of galactose oxidase variant with genetically incorporated F2-Tyr495
Classification: OXIDOREDUCTASE
Source organism: Fusarium austroamericanum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2025-02-18
Authors: Liu, A., Li, J., Graciano, A.
PDB entry 9nds: Miniaturized HLA A*02-TAX bound to A6c134 TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2025-02-18
Authors: Jude, K.M., Chen, X., Chaudhuri, A., White, W.L., Sgourakis, N.G., Baker, D.A., Garcia, K.C.
PDB entry 9ndt: The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA and ATP-gamma-S
Classification: REPLICATION, TRANSFERASE
Source organism: Herpesviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-18
Authors: Yao, Q., Yu, X.
PDB entry 9ndu: Crystal Structure of Ferric Human ADO C18S/C239S Variant in Complex with Hydralazine at 1.98 Angstrom Resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-02-18
Authors: Liu, A., Li, J., Duan, R.
PDB entry 9ndv: Scaffold attached to quinine-I aptamer (Tonic) local refinement of aptamer
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-02-18
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9ndw: Scaffold attached to quinine-I aptamer (Tonic) local refinement of core
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2025-02-18
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9ndx: Scaffold attached to quinine-I aptamer (Tonic) refinement of aptamer and core
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-02-18
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9ndy: Composite baseplate asymmetric unit of JohannRWettstein (Bas63)
Classification: VIRAL PROTEIN
Source organism: Escherichia phage JohannRWettstein
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-02-18
Authors: Hodgkinson-Bean, J.
PDB entry 9ndz: The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Classification: REPLICATION, TRANSFERASE
Source organism: Herpesviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-19
Authors: Yao, Q., Yu, X.
PDB entry 9ne0: The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Classification: REPLICATION, TRANSFERASE/INHIBITOR
Source organism: Herpesviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-19
Authors: Yao, Q., Yu, X.
PDB entry 9ne1: Crystal structure of a bacterial DOT1L methyl-transferase in complex with S-adenosyl homocysteine
Classification: TRANSFERASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-02-19
Authors: Mondino, S., Dalla Rizza, J., Larrieux, N., Buschiazzo, A.
PDB entry 9ne2: cryoEM structure of the human OGA-L Catalytic Dimer
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2025-02-19
Authors: Nyenhuis, S.B., Steenackers, A., Hinshaw, J.E., Hanover, J.A.
PDB entry 9ne3: [1,8,10,P-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (1,8,10) base pairs, 1 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.89 Å
Deposited: 2025-02-19
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ne4: cryoEM structure of the A-chain of the human OGA-L Catalytic Dimer
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-02-19
Authors: Nyenhuis, S.B., Steenackers, A., Hinshaw, J.E., Hanover, J.A.
PDB entry 9ne5: cryoEM structure of the B-chain of the human OGA-L Catalytic Dimer
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-02-19
Authors: Nyenhuis, S.B., Steenackers, A., Hinshaw, J.E., Hanover, J.A.
PDB entry 9ne6: Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the mismatch-editing state
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-02-19
Authors: Wang, F., He, Q., Li, H.
PDB entry 9ne7: Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the Pol-backtracking state
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2025-02-19
Authors: Wang, F., He, Q., Li, H.
PDB entry 9ne8: Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the mismatch-locking state
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-19
Authors: Wang, F., He, Q., Li, H.
PDB entry 9ne9: Human polymerase epsilon bound to PCNA and DNA with a pre-existing mismatch in the blocked conformation I
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2025-02-19
Authors: Wang, F., He, Q., Li, H.
PDB entry 9nea: Human polymerase epsilon bound to PCNA and DNA with a pre-existing mismatch in the blocked conformation II
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2025-02-19
Authors: Wang, F., He, Q., Li, H.
PDB entry 9neb: The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with Pritelivir
Classification: REPLICATION, TRANSFERASE/INHIBITOR
Source organism: Herpesviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-19
Authors: Yao, Q., Yu, X.
PDB entry 9nec: AcA-EI-shaker with free peptide conformation A
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-19
Authors: Tan, X., Swartz, K.J.
PDB entry 9ned: AcA-EI-shaker with free peptide conformation B
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-19
Authors: Tan, X., Swartz, K.J.
PDB entry 9nee: The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with Pritelivir
Classification: REPLICATION, TRANSFERASE/INHIBITOR
Source organism: Herpesviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-19
Authors: Yao, Q., Yu, X.
PDB entry 9nef: Cryo-EM of NBD-L4pY filament at 5mM concentration
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-19
Authors: Zia, A., Guo, J., Xu, B., Wang, F.
PDB entry 9neg: AcA-EI-shaker Class C
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-02-19
Authors: Tan, X., Swartz, K.J.
PDB entry 9neh: The 1.48 Angstrom crystal structure of galactose oxidase variant with genetically incorporated Cl2-Tyr495
Classification: OXIDOREDUCTASE
Source organism: Fusarium austroamericanum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-02-19
Authors: Liu, A., Li, J., Graciano, A.
PDB entry 9nei: GT-Shaker Class A
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-02-19
Authors: Tan, X., Swartz, K.J.
PDB entry 9nej: AZD-3 bound EFPA transporter of Mycobacterium tuberculosis
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-19
Authors: Khandelwal, N.K., Gupta, M., Stroud, R.M.
PDB entry 9nek: Capsid structure of the Syngnathus scovelli chapparvovirus virus-like particle
Classification: VIRUS LIKE PARTICLE
Source organism: Syngnathus scovelli chapparvovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-02-19
Authors: Penzes, J.J., Kaelber, J.T.
PDB entry 9nel: The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with amenamevir
Classification: REPLICATION, TRANSFERASE/INHIBITOR
Source organism: Herpesviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-19
Authors: Yao, Q., Yu, X.
PDB entry 9nem: Structure of Unc119-Farnesylated peptide complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2025-02-20
Authors: Srivastava, D., Sebag, J.A., Artemyev, N.O.
PDB entry 9nen: Cryo-EM structure of human Ro60
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-20
Authors: Nam, H., Deme, J.C., Lea, S.M., Wolin, S.L.
PDB entry 9neo: TEAD2 YAP binding domain (YBD)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2025-02-20
Authors: Lee, C.C.
PDB entry 9nep: Cryo-EM structure of Ro60/minimal misfolded pre-5S rRNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-02-20
Authors: Nam, H., Deme, J.C., Lea, S.M., Wolin, S.L.
PDB entry 9neq: Cryo-EM of NBD-L4pY nanofibers at 1.25mM concentration
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-20
Authors: Zia, A., Guo, J., Xu, B., Wang, F.
PDB entry 9nes: C-terminal mVenues tagged Shaker TM domain in C4 symmetry
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-02-20
Authors: Tan, X., Swartz, K.J.
PDB entry 9net: Cryo-EM of NBD-L4pY filament at 0.4 mM concentration
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-20
Authors: Zia, A., Guo, J., Xu, B., Wang, F.
PDB entry 9neu: C-terminal mVenues tagged Shaker T1 domain in C4 symmetry
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-02-20
Authors: Tan, X., Swartz, K.J.
PDB entry 9nev: Acanthamoeba Polyphaga Mimivirus L230
Classification: VIRAL PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-20
Authors: Chen, T., Buhlheller, C., Guo, H.
PDB entry 9new: [1,8,11-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (1,8,11) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.91 Å
Deposited: 2025-02-20
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nex: [2,8,10-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (2,8,10) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.76 Å
Deposited: 2025-02-20
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nez: Structure of the Pyrococcus furiosus SHI complex
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2025-02-20
Authors: Xiao, X., Li, H.
PDB entry 9nf0: Structure of the NADPH-bound Pyrococcus furiosus SHI complex
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-02-20
Authors: Xiao, X., Li, H.
PDB entry 9nf1: cis-CaaD E114D mutant
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-20
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nf2: KRAS G12D Mutant KRAS 1-169 at 298 K bound to MRTX-1133 and GMPPNP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-20
Authors: Xu, M., Deck, S.L., Milano, S.K., Aplin, C., Cerione, R.A.
PDB entry 9nf3: cis-CaaD E114D mutant with a covalent ethylene intermediate of the hydration and decarboxylation of cis-3-chloroacrylic acid
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-20
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nf4: Cg10062 E114N mutant apo
Classification: HYDROLASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2025-02-20
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nf6: Cg10062 E114N mutant with a covalent hydroxypropionate and acrylate intermediate of the hydration of acetylenecarboxylic acid
Classification: HYDROLASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2025-02-20
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nf7: cryo-EM structure of Serendipita indica sulfate transporter SiSulT in sulphate bound state
Classification: MEMBRANE PROTEIN
Source organism: Serendipita indica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2025-02-21
Authors: Khandelwal, N.K., Kumar, P., Gupta, M., Finer-Moore, J., Stroud, R.M.
PDB entry 9nf8: Cryo-EM structure of Ro60/La/truncated misfolded human pre-5S rRNA complex with Fab, composite map
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-21
Authors: Nam, H., Deme, J.C., Lea, S.M., Wolin, S.L.
PDB entry 9nf9: cis-CaaD E114N mutant apo
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nfa: Cryo-EM structure of Ro60/La/minimal misfolded pre-5S rRNA complex with Fab, composite map
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-02-21
Authors: Nam, H., Deme, J.C., Lea, S.M., Wolin, S.L.
PDB entry 9nfb: Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*02
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-02-21
Authors: Maso, L.
PDB entry 9nfc: Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A*03
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-02-21
Authors: Maso, L.
PDB entry 9nfd: cis-CaaD E114N mutant with acetylenecarboxylic acid substrate and hydration product malonic semialdehyde
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nfe: Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Classification: HYDROLASE
Source organism: metagenome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-02-21
Authors: Martins, M.P., Santos, C.R., Dolce, L.G., Murakami, M.T.
PDB entry 9nff: Native cis-CaaD with acetylenecarboxylic acid substrate
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nfg: [4,8,8-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,8,8) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.77 Å
Deposited: 2025-02-21
Authors: Abi Rizk, J., Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nfh: Native cis-CaaD
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nfi: Tuna P-glycoprotein Apo Conformation 1
Classification: TRANSPORT PROTEIN
Source organism: Thunnus albacares
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2025-02-21
Authors: Young, M.A., Rees, S.D., Nicklisch, S.C.T., Stowell, M., Hamdoun, A., Chang, G., Center for Structures of Membrane Proteins (CSMP)
PDB entry 9nfj: Tuna P-glycoprotein Apo Conformation 2
Classification: TRANSPORT PROTEIN
Source organism: Thunnus albacares
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2025-02-21
Authors: Young, M.A., Rees, S.D., Nicklisch, S.C.T., Stowell, M., Hamdoun, A., Chang, G.
PDB entry 9nfk: Tuna P-glycoprotein Apo Conformation 3
Classification: TRANSPORT PROTEIN
Source organism: Thunnus albacares
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2025-02-21
Authors: Young, M.A., Rees, S.D., Nicklisch, S.C.T., Stowell, M., Hamdoun, A., Chang, G.
PDB entry 9nfl: Tuna P-glycoprotein Apo Conformation 4
Classification: TRANSPORT PROTEIN
Source organism: Thunnus albacares
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2025-02-21
Authors: Young, M.A., Rees, S.D., Nicklisch, S.C.T., Stowell, M., Hamdoun, A., Chang, G.
PDB entry 9nfm: Tuna P-glycoprotein bound to DDT
Classification: TRANSPORT PROTEIN
Source organism: Thunnus albacares
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2025-02-21
Authors: Young, M.A., Rees, S.D., Nicklisch, S.C.T., Stowell, M., Hamdoun, A., Chang, G.
PDB entry 9nfn: Nanotube of Y5 - (5 protomer)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2025-02-21
Authors: Das, A., Conticello, V.
PDB entry 9nfo: [6,7,7-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (6,7,7) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.03 Å
Deposited: 2025-02-21
Authors: Abi Rizk, J., Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nfp: Structure of SARS-CoV-2 NSP14 bound to N-((4-cyclopropylthiazol-2-yl)methyl)-1H-pyrazole-3-carboxamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-21
Authors: Coker, J.A., Sun, R., Polzer, P.M., Jung, J., Stauffer, S.R.
PDB entry 9nfq: Crystal structure of CRBN-DDB1 and MRT-3486 in complex with NEK7
Classification: DNA Binding Protein/Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2025-02-21
Authors: Quan, C., Petzold, G., Bunker, R.D., Wiedmer, L., Gainza, P., Tsai, J.H.C.
PDB entry 9nfr: Crystal structure of CRBN-DDB1 and MRT-23227 in complex with VAV1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2025-02-21
Authors: Trenh, P., Bunker, R.D., Lucas, X., Gainza, P., Tsai, J.H.C.
PDB entry 9nfs: Structure of J-PKAc chimera in complex with Aplithianine j1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-02-21
Authors: Martinez Fiesco, J.A., Zhang, P.
PDB entry 9nfu: CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Classification: DE NOVO PROTEIN
Source organism: Clostridioides difficile; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-21
Authors: Weidle, C., Borst, A.J.
PDB entry 9ng2: Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 4
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.61 Å
Deposited: 2025-02-21
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9ng4: cis-CaaD Y103F mutant apo
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9ng5: cis-CaaD Y103F mutant soaked with acetylencarboxylic acid
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9ng7: cis-CaaD H28A mutant
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9ng8: cis-CaaD T34A mutant apo
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9ng9: cis-CaaD T34A mutant soaked with acetylenecarboxylic acid
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nga: cis-CaaD T34A mutant soaked with cis-3-chloroacrylic acid
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9ngb: truncated cis-CaaD
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-02-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9ngc: ELIC5 with propylamine facing ECD outwards in liposomes with 2:1:1 POPC:POPE:POPG
Classification: MEMBRANE PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-21
Authors: Dalal, V., Cheng, W.W.L.
PDB entry 9ngd: cis-CaaD/Cg10062 chimera
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-02-22
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9nge: The ubiquitin-associated domain of human thirty-eight negative kinase-1 rigidly fused to a double trigger variant of the 1TEL crystallization chaperone
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-02-22
Authors: Averett, J.C., Bradford, M.J., Averett, B.J., Hansen, D., Doukov, T., Moody, J.D.
PDB entry 9ngf: ELIC facing ECD outwards in liposomes with 2:1:1 POPC:POPE:POPG
Classification: MEMBRANE PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-22
Authors: Dalal, V., Cheng, W.W.L.
PDB entry 9ngg: ELIC facing ECD inwards in liposomes with 2:1:1 POPC:POPE:POPG
Classification: MEMBRANE PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-22
Authors: Dalal, V., Cheng, W.W.L.
PDB entry 9ngh: Cg10062 E114N mutant with acetylenecarboxylic acid
Classification: HYDROLASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2025-02-22
Authors: Silva, K., Nayebi, G.H., Geiger, J.H., Draths, K.
PDB entry 9ngi: ELIC5 with propylamine facing ECD inwards in liposomes with 2:1:1 POPC:POPE:POPG
Classification: MEMBRANE PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-02-22
Authors: Dalal, V., Cheng, W.W.L.
PDB entry 9ngj: CryoEM structure of human ABCD3 bound to Phytanoyl-CoA
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-02-22
Authors: Gupta, M., Khandelwal, N.K., Stroud, R.M.
PDB entry 9ngk: Nanotube of Y5 - (4 protofilament)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-02-22
Authors: Das, A., Conticello, V.P.
PDB entry 9ngl: cis-CaaD E114Q
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-22
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9ngm: CryoEM structure of human ABCD3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2025-02-22
Authors: Gupta, M., Khandelwal, N.K., Stroud, R.M.
PDB entry 9ngo: CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED noncleavable H2A* SUBSTRATE PRE-MRNA (FOCUS MAP)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-02-22
Authors: Desotell, A., Tong, L.
PDB entry 9ngp: EGFR wildtype in complex with BI-4732
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-22
Authors: Damghani, T., Heppner, D.E.
PDB entry 9ngq: ELIC state 1 with propylamine facing ECD outwards in liposomes with 2:1:1 POPC:POPE:POPG
Classification: MEMBRANE PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-22
Authors: Dalal, V., Cheng, W.W.L.
PDB entry 9ngr: ELIC state 2 with propylamine facing ECD outwards in liposomes with 2:1:1 POPC:POPE:POPG
Classification: MEMBRANE PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-22
Authors: Dalal, V., Cheng, W.W.L.
PDB entry 9ngs: ELIC with propylamine facing ECD inwards in liposomes with 2:1:1 POPC:POPE:POPG
Classification: MEMBRANE PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-02-22
Authors: Dalal, V., Cheng, W.W.L.
PDB entry 9ngt: Crystal structure of CRBN-DDB1 and FPFT-2216 in complex with mTOR
Classification: DNA Binding Protein/Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2025-02-22
Authors: Petzold, G., Trenh, P., Bunker, R.D., Tsai, J.H.C.
PDB entry 9ngu: In situ cryo-EM structure of outer membrane cap (OMC) of the Legionella Dot/Icm T4SS machine
Classification: PROTEIN TRANSPORT
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-02-22
Authors: Yue, J., Jun, L.
PDB entry 9ngv: In situ cryo-EM structure of periplasmic ring (PR) of the Legionella Dot/Icm T4SS machine.
Classification: PROTEIN TRANSPORT
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-02-22
Authors: Yue, J., Jun, L.
PDB entry 9ngw: In-situ cryo-EM structure of Dome of the Legionella Dot/Icm machine
Classification: PROTEIN TRANSPORT
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-02-22
Authors: Yue, J., Liu, J.
PDB entry 9ngx: Structure of the 5'SL-bound La Domain of the Human La-related Protein 6
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-02-22
Authors: Gordon, B.H., Silvers, R.
PDB entry 9ngy: In situ cryo-EM structure of protochannel (DotA-IcmX) of the Legionella Dot/Icm T4SS machine
Classification: PROTEIN TRANSPORT
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2025-02-22
Authors: Yue, J., Liu, J.
PDB entry 9ngz: Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in Apo state
Classification: MEMBRANE PROTEIN
Source organism: Serendipita indica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-02-23
Authors: Khandelwal, N.K., Kumar, P., Gupta, M., Finer-Moore, J., Stroud, R.M.
PDB entry 9nh0: In situ cryo-EM structure of PR and DotA-IcmX of the Legionella Dot/Icm T4SS machine at C1 symmetry
Classification: PROTEIN TRANSPORT
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.63 Å
Deposited: 2025-02-23
Authors: Yue, J., Liu, J.
PDB entry 9nh1: In situ cryo-EM structure of porin I of the Legionella Dot/Icm T4SS machine
Classification: PROTEIN TRANSPORT
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2025-02-23
Authors: Yue, J., Liu, J.
PDB entry 9nh2: In situ cryo-EM structure of porin III of the Legionella Dot/Icm T4SS machine
Classification: PROTEIN TRANSPORT
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2025-02-23
Authors: Yue, J., Liu, J.
PDB entry 9nh3: Helicobacter pylori strain SS1 KatA
Classification: OXIDOREDUCTASE
Source organism: Helicobacter pylori SS1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-02-23
Authors: Baylink, A.
PDB entry 9nh4: ELIC with propylamine in spNW25 nanodiscs with 2:1:1 POPC:POPE:POPG
Classification: MEMBRANE PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-02-23
Authors: Dalal, V., Cheng, W.W.L.
PDB entry 9nh5: CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED noncleavable H2A* SUBSTRATE PRE-MRNA (core region)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; Trichoplusia ni; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-02-24
Authors: Desotell, A., Tong, L.
PDB entry 9nh6: CRYO-EM STRUCTURE OF HUMAN U7 SNRNP WITH METHYLATED noncleavable H2A* SUBSTRATE PRE-MRNA (COMPOSITE MAP)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; Trichoplusia ni; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-02-24
Authors: Desotell, A., Tong, L.
PDB entry 9nh7: CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1.
Classification: DE NOVO PROTEIN
Source organism: Influenza A virus (strain A/USA:Iowa/1943 H1N1); synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-02-24
Authors: Borst, A.J., Weidle, C.
PDB entry 9nh8: CHD1-nucleosome complex (anchored state)
Classification: nuclear protein/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-24
Authors: James, A.M., Farnung, L.
PDB entry 9nh9: Crystal Structure of N-oxygenase HrmI with the diferric cofactor and the N(6)-hydroxy-L-lysine product bound
Classification: OXIDOREDUCTASE
Source organism: Streptomyces griseoflavus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-02-24
Authors: Skirboll, S.S., Phan, H.N., Swartz, P.D., Makris, T.M.
PDB entry 9nha: Structure of SARS-CoV-2 NSP14 bound to N-((4-isopropylthiazol-2-yl)methyl)-1H-pyrazole-3-carboxamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-24
Authors: Coker, J.A., Sun, R., Polzer, P.M., Jung, J., Stauffer, S.R.
PDB entry 9nhb: Cryo-EM structure of SIWI-piRNA-target(25-nt)-GTSF1 complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bombyx mori; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-02-24
Authors: Sarkar, S., Gebert, L.F.R., MacRae, I.J.
PDB entry 9nhc: Cryo-EM structure of SIWI-piRNA-target(49-nt)-GTSF1-Maelstrom complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bombyx mori; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-24
Authors: Sarkar, S., Gebert, L.F.R., MacRae, I.J.
PDB entry 9nhd: Cryo-EM structure of SIWI-piRNA-target(49-nt)-GTSF1-Maelstrom complex (conformation 2)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bombyx mori; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-02-24
Authors: Sarkar, S., Gebert, L.F.R., MacRae, I.J.
PDB entry 9nhe: Cryo-EM structure of SIWI-piRNA-target(49-nt)-Maelstrom complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bombyx mori; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-02-24
Authors: Sarkar, S., Gebert, L.F.R., MacRae, I.J.
PDB entry 9nhf: The structure of a family 168 glycoside hydrolase from the marine bacterium Muricauda eckloniae.
Classification: HYDROLASE
Source organism: Flagellimonas eckloniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-24
Authors: Knudson-Goerner, E.J., Boraston, A.B.
PDB entry 9nhg: E.coli DsbA in complex with N-(2-aminophenyl)-5-methylisoxazole-3-carboxamide
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-02-24
Authors: Wang, G., Heras, B.
PDB entry 9nhh: AMC016 v4.2 in complex with pAb Base-A isolated from animal RQk18 at week 43
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-24
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nhi: AMC016 v4.2 in complex with Base-C pAb isolated from animal RQk18 at week 43
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-24
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nhj: AMC016 v4.2 in complex with FP-A pAb from animal RQk18 at week 43
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-02-24
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nhk: BG505-CH505 Env glycoprotein in complex with NHP pAb Base-4 isolated from animal RUu18 at week 14
Classification: STRUCTURAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-02-24
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nhl: BG505-CH505 Env glycoprotein in complex with NHP pAb FP-1 isolated from animal RUu18 at week 14
Classification: STRUCTURAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-02-24
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nhm: BG505-CH505 Env glycoprotein in complex with NHP pAb V1V2V3-1 isolated from animal RUu18 at week 14
Classification: STRUCTURAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-02-24
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nhn: BG505-CH505 Env glycoprotein in complex with NHP pAb V1V2V3-2 isolated from animal RUu18 at week 14
Classification: STRUCTURAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-02-24
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nho: BG505-CH505 Env glycoprotein in complex with NHP pAb V1V2V3-5 isolated from animal RUu18 at week 14
Classification: STRUCTURAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-24
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nhq: The cryo-EM structure of NmTbpA and NmTbpB in a complex
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis serogroup B
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-02-25
Authors: Dubey, S.D., Noinaj, N.
PDB entry 9nhr: Crystal structure of structure of WT BfrB from Pseudomonas aeruginosa in complex with a protein-protein interaction inhibitor KM-5-25
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-02-25
Authors: Lovell, S., Seibold, S., Battaile, K.P., Yao, H., Rivera, M.
PDB entry 9nhs: Cryo-EM structure of SIWI-piRNA-target(39-nt)-GTSF1-Maelstrom-Spindle-E complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bombyx mori; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-02-25
Authors: Sarkar, S., Gebert, L.F.R., MacRae, I.J.
PDB entry 9nht: Crystal structure of structure of WT BfrB from Pseudomonas aeruginosa in complex with a protein-protein interaction inhibitor KM-5-35
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-25
Authors: Lovell, S., Seibold, S., Battaile, K.P., Yao, H., Rivera, M.
PDB entry 9nhu: Structure of SARS-CoV-2 NSP14 bound to 5-(((cyclopropylmethyl)amino)methyl)-N-((4-cyclopropylthiazol-2-yl)methyl)-1H-pyrazole-3-carboxamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-25
Authors: Coker, J.A., Sun, R., Polzer, P.M., Jung, J., Stauffer, S.R.
PDB entry 9nhw: Oritinib in complex with WT EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2025-02-25
Authors: Damghani, T., Lin, K.S., Heppner, D.E.
PDB entry 9nhz: Cryo-EM structure of an MgtA tetramer in E2-P and E1-like states
Classification: TRANSPORT PROTEIN
Source organism: Lactococcus lactis subsp. lactis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2025-02-25
Authors: Khan, M.B., Primeau, J.O., Basu, P.C., Morth, J.P., Lemieux, M.J., Young, H.S.
PDB entry 9ni0: L54A Mutant of E. coli Dihydrofolate Reductase Complexed with Nicotinamide Adenine Dinucleotide Phosphate (oxidized form)
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2025-02-25
Authors: Fried, S.D.E., Boxer, S.G.
PDB entry 9ni9: BG505-CH505 Env glycoprotein in complex with NHP pAb Base-1 isolated from animal RUu18 at week 14
Classification: STRUCTURAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-25
Authors: Pratap, P.P., Ozorowski, G., Ward, A.B.
PDB entry 9nia: Crystal structure of Vibrio cholerae CqsR bound to ethanolamine
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-02-25
Authors: Guarnaccia, A.M., Capodagli, G.C., Neiditch, M.B.
PDB entry 9nib: Black sea bass polyomavirus LTA NLS bound to improtin alpha 2
Classification: PROTEIN TRANSPORT
Source organism: Black sea bass polyomavirus 1; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-25
Authors: Hoad, M., Forwood, J.K., Alvisi, G.
PDB entry 9nic: E.coli DsbA in complex with N-(2-amino-3-fluorophenyl)-5-methylisoxazole-3-carboxamide
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-02-26
Authors: Wang, G., Heras, B.
PDB entry 9nig: PB TCR in complex with HLA-DR4 presenting citrullinated Tenascin C peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.20008 Å
Deposited: 2025-02-26
Authors: Dao, H.T., Loh, T.J., Lim, J.J., Rossjohn, J.
PDB entry 9nih: Crystal structure of HLA-DR4 presenting citrullinated Tenascin C peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-26
Authors: Dao, H.T., Loh, T.J., Lim, J.J., Rossjohn, J.
PDB entry 9nii: Crystal structure of citrullinated Tenascin-C restricted PB TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-02-26
Authors: Dao, H.T., Loh, T.J., Lim, J.J., Rossjohn, J.
PDB entry 9nij: Structure of the acyltransferase domain of NcdE, a multi-domain NRPS protein from nocardichelin biosynthesis
Classification: TRANSFERASE
Source organism: Nocardia carnea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2025-02-26
Authors: Fisk, M.B., Gulick, A.M.