LiteFold/PDB huggingface dataset:
PDB entry 7yix: The Cryo-EM Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (ScFv) Complex.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2022-07-18
Authors: Yu, Y.T., Yao, D.Q., Zhang, Q., Rao, B., Xia, Y., Lu, Y., Qin, A., Ma, P.X., Cao, Y.
PDB entry 7yiy: Cryo-EM structure of SPT-ORMDL3 complex
Classification: TRANSFERASE/INHIBITOR COMPLEX
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-07-18
Authors: Xie, T., Liu, P., Gong, X.
PDB entry 7yiz: Crystal structure of anti-mPEG h15-2b Fab W104Y mutant
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-07-18
Authors: Chang, C.Y., Nguyen, T.M.T., Li, Y.C., Su, Y.C.
PDB entry 7yj0: Structural basis of oxepinone formation by a flavin-monooxygenase VibO
Classification: OXIDOREDUCTASE
Source organism: Boreostereum vibrans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2022-07-18
Authors: Zhang, M.F., Pan, L.F.
PDB entry 7yj1: Cryo-EM structure of SPT-ORMDL3 (ORMDL3-deltaN2) complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-19
Authors: Xie, T., Liu, P., Gong, X.
PDB entry 7yj2: Cryo-EM structure of SPT-ORMDL3 (ORMDL3-N13A) complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-19
Authors: Xie, T., Liu, P., Gong, X.
PDB entry 7yj3: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with human ACE2 (local refinement)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-07-19
Authors: Zhao, Z.N., Xie, Y.F., Qi, J.X., Gao, G.F.
PDB entry 7yj4: Cryo-EM structure of the INSL5-bound human relaxin family peptidereceptor 4 (RXFP4)-Gi complex
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2022-07-19
Authors: Chen, Y., Zhou, Q.T., Wang, J., Xu, Y.W., Wang, Y., Yan, J.H., Wang, Y.B., Zhu, Q., Zhao, F.H., Li, C.H., Chen, C.W., Cai, X.Q., Bathgate, R.A.D., Shen, C., Liu, H., Xu, H.E., Yang, D.H., Wang, M.W.
PDB entry 7yj5: Crystal structure of Stenoloma chusanum chalcone synthase 1 (ScCHS1)
Classification: TRANSFERASE
Source organism: Odontosoria chusana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.701 Å
Deposited: 2022-07-19
Authors: Li, J.X., Cheng, A.X., Zhang, P.
PDB entry 7yj6: Crystal structure of Stenoloma chusanum chalcone synthase 1 (ScCHS1) complex with CoA
Classification: TRANSFERASE
Source organism: Odontosoria chusana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.704 Å
Deposited: 2022-07-19
Authors: Li, J.X., Cheng, A.X., Zhang, P.
PDB entry 7yj7: Crystal structure of Stenoloma chusanum chalcone synthase 1 (ScCHS1) complex with Naringenin
Classification: TRANSFERASE
Source organism: Odontosoria chusana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2022-07-19
Authors: Li, J.X., Cheng, A.X., Zhang, P.
PDB entry 7yj8: Crystal structure of Stenoloma chusanum chalcone synthase 1 (ScCHS1) complex with Pinocembrin
Classification: TRANSFERASE
Source organism: Odontosoria chusana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-19
Authors: Li, J.X., Cheng, A.X., Zhang, P.
PDB entry 7yj9: Crystal structure of Stenoloma chusanum chalcone synthase 1 (ScCHS1) complex with CoA and Naringenin
Classification: TRANSFERASE
Source organism: Odontosoria chusana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.851 Å
Deposited: 2022-07-19
Authors: Li, J.X., Cheng, A.X., Zhang, P.
PDB entry 7yja: Crystal structure of Stenoloma chusanum chalcone synthase 1 (ScCHS1) complex with CoA and Pinocembrin
Classification: TRANSFERASE
Source organism: Odontosoria chusana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-07-19
Authors: Li, J.X., Cheng, A.X., Zhang, P.
PDB entry 7yjb: Crystal structure of Stenoloma chusanum chalcone synthase 1 (ScCHS1) complex with CoA and Eriodictyol
Classification: TRANSFERASE
Source organism: Odontosoria chusana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-19
Authors: Li, J.X., Cheng, A.X., Zhang, P.
PDB entry 7yjc: Crystal structure of Human HPSE1 in complex with inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-07-19
Authors: Mima, M., Fujimoto, N., Imai, Y.
PDB entry 7yjd: Crystal structure of the P450 BM3 heme domain mutant F87A in complex with N-imidazolyl-hexanoyl-L-phenylalanine and hydroxylamine
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-19
Authors: Jiang, Y., Dong, S., Feng, Y., Cong, Z.
PDB entry 7yje: Crystal structure of the P450 BM3 heme domain mutant F87G/T268V/A184V/A328V in complex with N-imidazolyl-hexanoyl-L-phenylalanine and acetate ion
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-07-20
Authors: Dong, S., Chen, J., Jiang, Y., Cong, Z., Feng, Y.
PDB entry 7yjf: Crystal structure of the P450 BM3 heme domain mutant F87A/T268P/V78I in complex with N-imidazolyl-pentanoyl-L-phenylalanine and hydroxylamine
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.515 Å
Deposited: 2022-07-20
Authors: Dong, S., Chen, J., Jiang, Y., Cong, Z., Feng, Y.
PDB entry 7yjg: Crystal structure of the P450 BM3 heme domain mutant F87A/T268V/A82C/L181M in complex with N-imidazolyl-pentanoyl-L-phenylalanine and hydroxylamine
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.684 Å
Deposited: 2022-07-20
Authors: Dong, S., Chen, J., Jiang, Y., Cong, Z., Feng, Y.
PDB entry 7yjh: Crystal structure of the P450 BM3 heme domain mutant F87V/T268I in complex with N-imidazolyl-pentanoyl-L-phenylalanine and hydroxylamine
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.792 Å
Deposited: 2022-07-20
Authors: Dong, S., Chen, J., Jiang, Y., Cong, Z., Feng, Y.
PDB entry 7yji: Crystal structure of Lpg1083 from Legionella pneumophila
Classification: APOPTOSIS
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-20
Authors: Ge, H., Gao, J., Chen, X.
PDB entry 7yjj: Human Cytosolic 10-formyltetrahydrofolate dehydrogenase and Gossypol complex
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.31 Å
Deposited: 2022-07-20
Authors: Han, C.W., Lee, H.N., Jeong, M.S., Jang, S.B.
PDB entry 7yjk: Cryo-EM structure of the dimeric atSPT-ORM1 complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-20
Authors: Xie, T., Liu, P., Gong, X.
PDB entry 7yjl: Melbournevirus major capsid protein built from 4.4A reconstruction
Classification: VIRAL PROTEIN
Source organism: Melbournevirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.42 Å
Deposited: 2022-07-20
Authors: Burton-Smith, R.N., Okamoto, K., Murata, K.
PDB entry 7yjm: Cryo-EM structure of the monomeric atSPT-ORM1 complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-20
Authors: Xie, T., Liu, P., Gong, X.
PDB entry 7yjn: Cryo-EM structure of the monomeric atSPT-ORM1 (ORM1-N17A) complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-20
Authors: Xie, T., Liu, P., Gong, X.
PDB entry 7yjo: Cryo-EM structure of the monomeric atSPT-ORM1 (LCB2a-deltaN5) complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-20
Authors: Xie, T., Liu, P., Gong, X.
PDB entry 7yjp: Crystal structure of MCR-1 treated by AuCl
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-07-20
Authors: Zhang, Q., Wang, M., Sun, H.
PDB entry 7yjq: Crystal structure of MCR-1-S treated by auranofin
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-07-20
Authors: Zhang, Q., Sun, H., Wang, M.
PDB entry 7yjr: Crystal structure of MCR-1-S treated by sodium aurothiomalate
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-07-20
Authors: Zhang, Q., Sun, H., Wang, M.
PDB entry 7yjs: Crystal structure of MCR-1-S treated by sodium aurothiosulfate
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-20
Authors: Zhang, Q., Sun, H., Wang, M.
PDB entry 7yjt: Crystal structure of MCR-1-S treated by aurothioglucose
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-20
Authors: Zhang, Q., Sun, H., Wang, M.
PDB entry 7yjw: Structure of Leptospira santarosai serovar shermani LRR protein LSS01692
Classification: MEMBRANE PROTEIN
Source organism: Leptospira santarosai serovar Shermani
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-07-20
Authors: Wu, C.T., Hsu, S.H., Yang, C.W., Sun, Y.J.
PDB entry 7yk1: Structural basis of human PRPS2 filaments
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2022-07-21
Authors: Lu, G.M., Hu, H.H., Liu, J.L.
PDB entry 7yk2: Cryo-EM structure of Apo-alpha-syn fibril
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-21
Authors: Xu, Q.H., Xia, W.C., Tao, Y.Q., Liu, C.
PDB entry 7yk3: Crystal structure of DarTG toxin-antitoxin complex from Mycobacterium tuberculosis
Classification: TOXIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-21
Authors: Deep, A., Kaur, J., Singh, L., Thakur, K.G.
PDB entry 7yk4: ox40-antibody
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-07-21
Authors: Zhou, A.
PDB entry 7yk5: Rubisco from Phaeodactylum tricornutum bound to PYCO1(452-592)
Classification: PHOTOSYNTHESIS
Source organism: Phaeodactylum tricornutum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2022-07-21
Authors: Oh, Z.G., Ang, W.S.L., Bhushan, S., Mueller-Cajar, O.
PDB entry 7yk6: Cryo-EM structure of the compound 4-bound human relaxin family peptide receptor 4 (RXFP4)-Gi complex
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2022-07-21
Authors: Chen, Y., Zhou, Q.T., Wang, J., Xu, Y.W., Wang, Y., Yan, J.H., Wang, Y.B., Zhu, Q., Zhao, F.H., Li, C.H., Chen, C.W., Cai, X.Q., Bathgate, R.A.D., Shen, C., Liu, H., Xu, H.E., Yang, D.H., Wang, M.W.
PDB entry 7yk7: Cryo-EM structure of the DC591053-bound human relaxin family peptide receptor 4 (RXFP4)-Gi complex
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2022-07-21
Authors: Chen, Y., Zhou, Q.T., Wang, J., Xu, Y.W., Wang, Y., Yan, J.H., Wang, Y.B., Zhu, Q., Zhao, F.H., Li, C.H., Chen, C.W., Cai, X.Q., Bathgate, R.A.D., Shen, C., Xu, H.E., Yang, D.H., Liu, H., Wang, M.W.
PDB entry 7yk8: Cryo-EM structure of dLAG3-alpha-syn fibril
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-22
Authors: Xu, Q.H., Xia, W.C., Tao, Y.Q., Liu, C.
PDB entry 7yk9: Neutron Structure of PcyA I86D Mutant Complexed with Biliverdin at Room Temperature
Classification: OXIDOREDUCTASE
Source organism: Synechocystis sp. PCC 6803
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2022-07-22
Authors: Unno, M., Igarashi, K.
PDB entry 7yka: Crystal structure of Fis1 (Mitochondrial fission 1 protein)
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-07-22
Authors: Duc, N.M., Bong, S.M., Lee, B.I.
PDB entry 7ykb: Neutron Structure of PcyA D105N Mutant Complexed with Biliverdin at Room Temperature
Classification: OXIDOREDUCTASE
Source organism: Synechocystis sp. PCC 6803 substr. Kazusa
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2022-07-22
Authors: Unno, M., Nanasawa, R.
PDB entry 7ykc: crystal structure of the Phenylalanine-regulated 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (ARO3) from Saccharomyces cerevisiae
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-07-22
Authors: Liu, H., Luo, Y.
PDB entry 7ykd: Cryo-EM structure of the human chemerin receptor 1 complex with the C-terminal nonapeptide of chemerin
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2022-07-22
Authors: Chen, G., Liao, Q., Ye, R.D., Wang, J.
PDB entry 7yke: Crystal structure of chondroitin ABC lyase I in complex with chondroitin disaccharide 4,6-sulfate
Classification: LYASE
Source organism: Proteus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-07-22
Authors: Takashima, M., Watanabe, I., Miyanaga, A., Eguchi, T.
PDB entry 7ykf: Crystal structure of MAGI2 PDZ0-GK/pEphexin4 complex
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2022-07-22
Authors: Zhang, M., Lin, L., Zhu, J.
PDB entry 7ykg: Crystal structure of MAGI2 PDZ0-GK/pSGEF complex
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2022-07-22
Authors: Zhang, M., Lin, L., Zhu, J.
PDB entry 7ykh: Crystal structure of MAGI2 PDZ0-GK domain in complex with phospho-SAPAP1 GBR2 peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-22
Authors: Zhang, M., Lin, L., Zhu, J.
PDB entry 7yki: Crystal structure of MAGI2 PDZ0-GK domain in complex with phospho-SAPAP1 GBR3 peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-22
Authors: Zhang, M., Lin, L., Zhu, J.
PDB entry 7ykj: Omicron RBDs bound with P3E6 Fab (one up and one down)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-22
Authors: Tang, B., Dang, S.
PDB entry 7ykk: Cryo-EM structure of Drg1 hexamer treated with ADP
Classification: RIBOSOMAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2022-07-22
Authors: Ma, C.Y., Wu, D.M., Chen, Q., Gao, N.
PDB entry 7ykl: Cryo-EM structure of Drg1 hexamer treated with AMPPNP
Classification: RIBOSOMAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2022-07-22
Authors: Ma, C.Y., Wu, D.M., Chen, Q., Gao, N.
PDB entry 7ykm: Structure of DciA DUF721 domain from Deinococcus radiodurans
Classification: REPLICATION
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-22
Authors: Cheng, K.
PDB entry 7ykn: Crystal structure of (6-4) photolyase from Vibrio cholerae
Classification: LYASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-23
Authors: Cakilkaya, B., Kavakli, I.H., DeMirci, H.
PDB entry 7yko: Crystal structure of a novel alpha/beta hydrolase mutant from thermomonospora curvata in complex with pentane-1,5-diol
Classification: HYDROLASE
Source organism: Thermomonospora curvata DSM 43183
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2022-07-23
Authors: Han, X., Jian, G., Bornscheuer, U.T., Wei, R., Liu, W.
PDB entry 7ykp: Crystal structure of a novel alpha/beta hydrolase from thermomonospora curvata with glycerol
Classification: HYDROLASE
Source organism: Thermomonospora curvata DSM 43183
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2022-07-23
Authors: Han, X., Jian, G., Bornscheuer, U.T., Wei, R., Liu, W.
PDB entry 7ykq: Crystal structure of a novel alpha/beta hydrolase mutant from thermomonospora curvata in apo form
Classification: HYDROLASE
Source organism: Thermomonospora curvata DSM 43183
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2022-07-23
Authors: Han, X., Jian, G., Bornscheuer, U.T., Wei, R., Liu, W.
PDB entry 7ykr: Structure of TRPA1 in Drosophila melanogaster in a state with 17 ankyrin repeats determined
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-23
Authors: Sun, L., Liu, X., Yang, Z., Wang, X.
PDB entry 7yks: Structure of TRPA1 in Drosophila melanogaster in a state with 5 ankyrin repeats determined
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-23
Authors: Sun, L., Liu, X., Yang, Z., Wang, X.
PDB entry 7ykt: Cryo-EM structure of Drg1 hexamer in helical state treated with ADP/AMPPNP/benzo-diazaborine
Classification: RIBOSOMAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2022-07-23
Authors: Ma, C.Y., Wu, D.M., Chen, Q., Gao, N.
PDB entry 7ykv: The structure of archaeal nuclease RecJ2 from Methanocaldococcus jannaschii
Classification: DNA BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-07-24
Authors: Wang, W.W., Liu, X.P.
PDB entry 7ykw: Structure of hIAPP fibril at 3.6 Angstroms resolution
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-25
Authors: Li, D., Zhang, X., Wang, Y., Zhu, P.
PDB entry 7ykz: Cryo-EM structure of Drg1 hexamer in the planar state treated with ADP/AMPPNP/Diazaborine
Classification: RIBOSOMAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-07-25
Authors: Ma, C.Y., Wu, D.M., Chen, Q., Gao, N.
PDB entry 7yl0: Structure of hIAPP-TF-type2
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-25
Authors: Li, D., Zhang, X., Wang, Y., Zhu, P.
PDB entry 7yl1: Crystal structure of JNK3 in complex with a fragment molecule
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2022-07-25
Authors: Ahn, H.-C., Duong, M.T.H.
PDB entry 7yl2: Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor Y07004
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2022-07-25
Authors: Huang, Y., Wei, A., Dong, R., Xu, H., Zhang, C., Chen, Z., Li, J., Wu, X., Zhang, Y., Xu, Y.
PDB entry 7yl3: Structure of hIAPP-TF-type1
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-25
Authors: Li, D., Zhang, X., Wang, Y., Zhu, P.
PDB entry 7yl4: Cell surface protein YwfG protein (apo form)
Classification: CELL ADHESION
Source organism: Lactococcus lactis subsp. lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-25
Authors: Tsuchiya, W., Fujimoto, Z., Suzuki, C.
PDB entry 7yl5: Cell surface protein YwfG protein complexed with mannose
Classification: CELL ADHESION
Source organism: Lactococcus lactis subsp. lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-07-25
Authors: Tsuchiya, W., Fujimoto, Z., Suzuki, C.
PDB entry 7yl6: Cell surface protein YwfG protein complexed with alpha-1,2-mannobiose
Classification: CELL ADHESION
Source organism: Lactococcus lactis subsp. lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2022-07-25
Authors: Tsuchiya, W., Fujimoto, Z., Suzuki, C.
PDB entry 7yl7: Structure of hIAPP-TF-type3
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-25
Authors: Li, D., Zhang, X.
PDB entry 7yl8: Neutron structure of Bacillus thermoproteolyticus Ferredoxin at room temperature
Classification: ELECTRON TRANSPORT
Source organism: Bacillus thermoproteolyticus
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2022-07-25
Authors: Unno, M., Wada, K., Kobayashi, K.
PDB entry 7yl9: Cryo-EM structure of complete transmembrane channel E289A mutant Vibrio cholerae Cytolysin
Classification: TOXIN
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2022-07-25
Authors: Mondal, A.K., Sengupta, N., Singh, M., Biswas, R., Lata, K., Lahiri, I., Dutta, S., Chattopadhyay, K.
PDB entry 7yla: Cryo-EM structure of 50S-HflX complex
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2022-07-25
Authors: Damu, W., Ning, G.
PDB entry 7ylb: Two monobodies recognizing the conserved epitopes of SARS-CoV-2 N antigen applicable to the broad COVID-19 diagnosis
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2022-07-26
Authors: Hu, M., Du, Y., Sun, R., Hao, Q.
PDB entry 7yld: Two monobodies recognizing the conserved epitopes of SARS-CoV-2 N antigen applicable to the broad COVID-19 diagnosis
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-26
Authors: Hu, M., Du, Y., Sun, R., Hao, Q.
PDB entry 7yle: RnDmpX in complex with DMSP
Classification: TRANSPORT PROTEIN
Source organism: Roseovarius nubinhibens ISM
Experimental method: X-RAY DIFFRACTION
Resolution: 2.052 Å
Deposited: 2022-07-26
Authors: Li, C.Y.
PDB entry 7ylf: Crystal structure of the chicken Toll-like receptor 15 TIR domain (2-mercaptoethanol adduct)
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-26
Authors: Ko, K.Y., Song, W.S., Yoon, S.I.
PDB entry 7ylg: Crystal structure of the chicken Toll-like receptor 15 TIR domain (glutathione adduct)
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-26
Authors: Ko, K.Y., Song, W.S., Yoon, S.I.
PDB entry 7ylk: Myoglobin containing Ir complex
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-07-26
Authors: Lee, J.H., Song, W.J.
PDB entry 7yll: Crystal structure of TTEDbh
Classification: TRANSFERASE
Source organism: Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.60001 Å
Deposited: 2022-07-26
Authors: Yan, X., Tian, L., Gao, H.
PDB entry 7ylm: Cryo-EM structure of 8-subunit Smc5/6 hinge region
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.17 Å
Deposited: 2022-07-26
Authors: Qian, L., Jun, Z., Xiang, Z., Wang, Z., Tong, C., Duo, J., Zhenguo, C., Wang, L.
PDB entry 7ylo: Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation
Classification: OXIDOREDUCTASE
Source organism: Limosilactobacillus fermentum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2022-07-26
Authors: Cheng, J., Luo, Y., Zhu, J., Tan, R., Wang, N., Lebedev, A.A.
PDB entry 7ylq: Crystal structure of Microcystinase C from Sphingomonas sp. ACM-3962 at 2.6 A resolution
Classification: HYDROLASE
Source organism: Sphingomonas sp. ACM-3962
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2022-07-26
Authors: Guo, X., Li, Z., Ding, W., Yin, P., Feng, L.
PDB entry 7ylr: Structure of a bacteria protein
Classification: METAL BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2022-07-26
Authors: Zhang, H., Ma, Y.J., Yu, G.M., Li, X.Z.
PDB entry 7yls: Structure of a bacteria protein complex
Classification: METAL BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-26
Authors: Zhang, H., Ma, Y.J., Yu, G.M., Li, X.Z.
PDB entry 7ylt: Structure of a bacteria protein
Classification: METAL BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-07-26
Authors: Zhang, H., Ma, Y.J., Yu, G.M., Li, X.Z.
PDB entry 7ylu: yeast TRiC-plp2-substrate complex at S1 TRiC-NPP state
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.55 Å
Deposited: 2022-07-27
Authors: Han, W.Y.
PDB entry 7ylv: yeast TRiC-plp2-substrate complex at S2 ATP binding state
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2022-07-27
Authors: Han, W.Y.
PDB entry 7ylw: yeast TRiC-plp2-tubulin complex at S3 closed TRiC state
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2022-07-27
Authors: Han, W.Y.
PDB entry 7ylx: yeast TRiC-plp2-actin complex at S4 closed TRiC state
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-27
Authors: Han, W.Y.
PDB entry 7yly: yeast TRiC-plp2 complex at S5 closed TRiC state
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2022-07-27
Authors: Han, W.Y.
PDB entry 7ylz: Unliganded form of hydroxyamidotransferase TsnB9
Classification: LIGASE
Source organism: Streptomyces sp. RM72
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2022-07-27
Authors: Nagata, R., Nishiyama, M., Kuzuyama, T.
PDB entry 7ym0: Lysoplasmalogen-specific phospholipase D (LyPls-PLD) with Ca2+
Classification: HYDROLASE
Source organism: Thermocrispum sp. RD004668
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2022-07-27
Authors: Yasutake, Y., Sakasegawa, S., Sugimori, D., Murayama, K.
PDB entry 7ym1: Structure of SsbA protein in complex with the anticancer drug 5-fluorouracil
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus subsp. aureus ED98
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2022-07-27
Authors: Huang, Y.H., Yang, P.C., Chiang, W.Y., Lin, E.S., Huang, C.Y.
PDB entry 7ym5: Crystal structure of the Salmonella effector SseK1
Classification: TOXIN
Source organism: Salmonella enterica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2022-07-27
Authors: Kim, U.J., Park, J.B., Yoo, Y., Cho, H.S.
PDB entry 7ym7: Crystal structure of the Salmonella effector SseK1 F187A mutant
Classification: TOXIN
Source organism: Salmonella enterica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-27
Authors: Kim, U.J., Park, J.B., Yoo, Y., Cho, H.S.
PDB entry 7ym8: Cryo-EM structure of Nb29-alpha1AAR-miniGsq complex bound to oxymetazoline
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2022-07-27
Authors: Toyoda, Y., Zhu, A., Yan, C., Kobilka, B.K., Liu, X.
PDB entry 7ym9: Crystal structure of a PET hydrolase from Cryptosporangium aurantiacum
Classification: HYDROLASE
Source organism: Cryptosporangium aurantiacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2022-07-28
Authors: Hong, H., Ki, D., Kim, K.-J.
PDB entry 7ymb: Structure of Alcohol dehydrogenase from Candida glabrata(CgADH)complexed with NADPH
Classification: OXIDOREDUCTASE
Source organism: [Candida] glabrata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-28
Authors: Sun, Z.W., Liu, Y.F., Xu, G.C., Ni, Y.
PDB entry 7ymd: Cryo-EM structure of Nse1/3/4
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.176 Å
Deposited: 2022-07-28
Authors: Qian, L., Jun, Z., Zhenguo, C., Wang, L.
PDB entry 7yme: Crystal structure of a PET hydrolase M9 variant from Cryptosporangium aurantiacum
Classification: HYDROLASE
Source organism: Cryptosporangium aurantiacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-28
Authors: Ki, D., Hong, H., Kim, K.-J.
PDB entry 7ymf: Crystal Structure of DDX3X449_450ET>DP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-07-28
Authors: Xiong, J.
PDB entry 7ymg: Crystal structure of BRD4 bromodomain 1 (BD1) in complex with 2-({3-ethyl-[1,2,4]triazolo[4,3-b]pyridazin-6-yl}amino)-3-(1H-indol-3-yl)propan-1-ol
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-07-28
Authors: Kim, J.H., Lee, B.I.
PDB entry 7ymh: Cryo-EM structure of Nb29-alpha1AAR-miniGsq complex bound to noradrenaline
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-07-28
Authors: Toyoda, Y., Zhu, A., Yan, C., Kobilka, B.K., Liu, X.
PDB entry 7ymi: PSII-Pcb Dimer of Acaryochloris Marina
Classification: PHOTOSYNTHESIS
Source organism: Acaryochloris marina MBIC11017
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-28
Authors: Shen, L.L., Gao, Y.Z., Wang, W.D., Zhang, X., Shen, J.R., Wang, P.Y., Han, G.Y.
PDB entry 7ymj: Cryo-EM structure of alpha1AAR-Nb6 complex bound to tamsulosin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2022-07-28
Authors: Toyoda, Y., Zhu, A., Yan, C., Kobilka, B.K., Liu, X.
PDB entry 7ymk: Estrogen Receptor Alpha Ligand Binding Domain C381S C417S Y537S Mutant in Complex with an Covalent Selective Estrogen Receptor Degrader 29c and GRIP Peptide
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-07-28
Authors: Min, J., Hu, H.B., Yang, Y., Dong, C.E., Zhou, H.B., Chen, C.-C., Guo, R.-T.
PDB entry 7yml: Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter capsulatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-07-28
Authors: Tani, K., Kanno, R., Ji, X.-C., Satoh, I., Kobayashi, Y., Nagashima, K.V.P., Hall, M., Yu, L.-J., Kimura, Y., Mizoguchi, A., Humbel, B.M., Madigan, M.T., Wang-Otomo, Z.-Y.
PDB entry 7ymm: PSII-Pcb Tetramer of Acaryochloris Marina
Classification: PHOTOSYNTHESIS
Source organism: Acaryochloris marina MBIC11017
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-28
Authors: Shen, L.L., Gao, Y.Z., Wang, W.D., Zhang, X., Shen, J.R., Wang, P.Y., Han, G.Y.
PDB entry 7ymn: Cryo-EM structure of in vitro PHF fibril
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2022-07-28
Authors: Li, X., Liu, C.
PDB entry 7ymo: Crystal structure of the recombination mediator protein RecO from Campylobacter jejuni
Classification: RECOMBINATION
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-29
Authors: Lee, S., Oh, H.B., Yoon, S.I.
PDB entry 7ymp: Crystal structure of lysoplasmalogen specific phospholipase D
Classification: HYDROLASE
Source organism: Thermocrispum sp. RD004668
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2022-07-29
Authors: Murayama, K., Kato-Murayama, M., Sugimori, D., Shirouzu, M., Hamana, H.
PDB entry 7ymq: Crystal structure of lysoplasmalogen specific phopholipase D, F211L mutant
Classification: HYDROLASE
Source organism: Thermocrispum sp. RD004668
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-07-29
Authors: Murayama, K., Kato-Murayama, M., Sugimori, D., Shirouzu, M., Hamana, H.
PDB entry 7ymr: Complex structure of lysoplasmalogen specific phopholipase D, F211L mutant with LPC
Classification: HYDROLASE
Source organism: Thermocrispum sp. RD004668
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2022-07-29
Authors: Murayama, K., Kato-Murayama, M., Sugimori, D., Shirouzu, M., Hamana, H.
PDB entry 7yms: Cryo-EM structure of Coxsackievirus A16 in complex with a neutralizing antibody 9B5
Classification: VIRUS
Source organism: Coxsackievirus A16
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-29
Authors: Cong, Y., Liu, C.X.
PDB entry 7ymt: Cryo-EM structure of MERS-CoV spike protein, Two RBD-up conformation 2
Classification: VIRAL PROTEIN
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.55 Å
Deposited: 2022-07-29
Authors: Hsu, S.T.D., Chang, N.E., Weng, Z.W., Yang, T.J., Draczkowski, P.
PDB entry 7ymu: Structure of Alcohol dehydrogenase from [Candida] glabrata
Classification: OXIDOREDUCTASE
Source organism: [Candida] glabrata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-29
Authors: Sun, Z.W., Liu, Y.F., Xu, G.C., Ni, Y.
PDB entry 7ymv: Cryo-EM structure of MERS-CoV spike protein, Two RBD-up conformation 1
Classification: VIRAL PROTEIN
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.74 Å
Deposited: 2022-07-29
Authors: Hsu, S.T.D., Chang, N.E., Weng, Z.W., Yang, T.J., Draczkowski, P.
PDB entry 7ymw: Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 4
Classification: VIRAL PROTEIN
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.05 Å
Deposited: 2022-07-29
Authors: Hsu, S.T.D., Chang, N.E., Weng, Z.W., Yang, T.J., Draczkowski, P.
PDB entry 7ymx: Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 2
Classification: VIRAL PROTEIN
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.44 Å
Deposited: 2022-07-29
Authors: Hsu, S.T.D., Chang, N.E., Weng, Z.W., Yang, T.J., Draczkowski, P.
PDB entry 7ymy: Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 1
Classification: VIRAL PROTEIN
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.96 Å
Deposited: 2022-07-29
Authors: Hsu, S.T.D., Chang, N.E., Weng, Z.W., Yang, T.J., Draczkowski, P.
PDB entry 7ymz: Cryo-EM structure of MERS-CoV spike protein, intermediate conformation
Classification: VIRAL PROTEIN
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.39 Å
Deposited: 2022-07-29
Authors: Hsu, S.T.D., Chang, N.E., Weng, Z.W., Yang, T.J., Draczkowski, P.
PDB entry 7yn0: Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation
Classification: VIRAL PROTEIN
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-07-29
Authors: Hsu, S.T.D., Chang, N.E., Weng, Z.W., Yang, T.J., Draczkowski, P.
PDB entry 7yn1: Crystal structure of selenomethionine labeled CcbD
Classification: LYASE
Source organism: Streptomyces caelestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-29
Authors: Mori, T., Kadlcik, S., Abe, I.
PDB entry 7yn2: Crystal structure of CcbD with methylthiolincosamide
Classification: LYASE
Source organism: Streptomyces caelestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-07-29
Authors: Mori, T., Lyu, S., Abe, I.
PDB entry 7yn3: Crystal structure of CcbD complex with CcbZ carrier protein domain
Classification: LYASE
Source organism: Streptomyces caelestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-29
Authors: Mori, T., Lyu, S., Abe, I.
PDB entry 7yn9: Cryo-EM structure of Cas7-11-crRNA binary complex
Classification: RNA BINDING PROTEIN
Source organism: Desulfonema ishimotonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2022-07-30
Authors: Huo, Y., Dong, Q., Zhao, H., Jiang, T.
PDB entry 7yna: Cryo-EM structure of Cas7-11-crRNA bound to target RNA-1
Classification: RNA BINDING PROTEIN
Source organism: Desulfonema ishimotonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2022-07-30
Authors: Huo, Y., Dong, Q., Zhao, H., Jiang, T.
PDB entry 7ynb: Cryo-EM structure of Cas7-11-crRNA bound to target RNA-2
Classification: RNA BINDING PROTEIN
Source organism: Desulfonema ishimotonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2022-07-30
Authors: Huo, Y., Dong, Q., Zhao, H., Jiang, T.
PDB entry 7ync: Cryo-EM structure of Cas7-11-crRNA bound to target RNA-3
Classification: RNA BINDING PROTEIN
Source organism: Desulfonema ishimotonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-07-30
Authors: Huo, Y., Dong, Q., Zhao, H., Jiang, T.
PDB entry 7ynd: Cryo-EM structure of Cas7-11-crRNA-Csx29 ternary complex
Classification: RNA BINDING PROTEIN
Source organism: Desulfonema ishimotonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2022-07-30
Authors: Huo, Y., Dong, Q., Zhao, H., Jiang, T.
PDB entry 7yne: Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
Classification: CONTRACTILE PROTEIN
Source organism: Gallus gallus; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-07-30
Authors: Takeda, S.
PDB entry 7ynf: CCA-bound alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-07-30
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7yng: CR-bound alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-30
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7ynh: Catalytic intermediate of copper amine oxidase determined by serial femtosecond X-ray crystallography using a single-flow liquid jet system
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-07-31
Authors: Murakawa, T., Okajima, T.
PDB entry 7yni: Structure of human SGLT1-MAP17 complex bound with substrate 4D4FDG in the occluded conformation
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2022-07-31
Authors: Chen, L., Niu, Y., Cui, W.
PDB entry 7ynj: Structure of human SGLT2-MAP17 complex bound with substrate AMG in the occluded conformation
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2022-07-31
Authors: Chen, L., Niu, Y., Cui, W.
PDB entry 7ynk: Structure of human SGLT2-MAP17 complex in the apo state in the inward-facing conformation
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-07-31
Authors: Chen, L., Niu, Y.
PDB entry 7ynl: EB-bound alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7ynm: ThT-bound alpha-synuclein fibrils conformation 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7ynn: ThT-bound alpha-synuclein fibrils conformation 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7yno: PiB-bound alpha-synuclein fibrils conformation 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7ynp: BF227-bound alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7ynq: PiB-bound alpha-synuclein fibrils conformation 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7ynr: C05-03-bound alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7yns: SIL5-bound alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7ynt: pFTAA-bound alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-31
Authors: Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 7ynu: Crystal structure of Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2022-08-01
Authors: Hosaka, T., Shirouzu, M.
PDB entry 7ynv: Crystal structure of photolysed Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-08-01
Authors: Hosaka, T., Shirouzu, M.
PDB entry 7ynw: Crystal structure of O-(2-nitrobenzyl)-L-tyrosine-tRNA sythetase in complex with O-(2-nitrobenzyl)-L-tyrosine
Classification: TRANSCRIPTION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2022-08-01
Authors: Hosaka, T., Shirouzu, M.
PDB entry 7ynx: Crystal structure of Pirh2 bound to poly-Ala peptide
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-01
Authors: Dong, C., Yan, X., Li, Y.
PDB entry 7yny: Crystal structure of baculovirus LEF-3 from Helicoverpa armigera nucleopolyhedrovirus
Classification: DNA BINDING PROTEIN
Source organism: Helicoverpa armigera nucleopolyhedrovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2022-08-01
Authors: Yin, J., Li, Z., Cao, S.
PDB entry 7ynz: Cryo-EM structure of human Slo1-LRRC26 complex with C1 symmetry
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-01
Authors: Yamanouchi, D., Nureki, O.
PDB entry 7yo0: Cryo-EM structure of human Slo1-LRRC26 complex with Symmetry Expansion
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-01
Authors: Yamanouchi, D., Nureki, O.
PDB entry 7yo1: Cryo-EM structure of RCK1 mutated human Slo1-LRRC26 complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-01
Authors: Yamanouchi, D., Nureki, O.
PDB entry 7yo2: Cryo-EM structure of RCK1-RCK2 mutated human Slo1 apo
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-08-01
Authors: Yamanouchi, D., Nureki, O.
PDB entry 7yo3: Cryo-EM structure of human Slo1-LRRC26 complex with C4 symmetry
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-08-01
Authors: Yamanouchi, D., Nureki, O.
PDB entry 7yo4: Cryo-EM structure of RCK1-RCK2 mutated human Slo1-LRRC26 complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-08-01
Authors: Yamanouchi, D., Nureki, O.
PDB entry 7yo5: Cryo-EM structure of RCK1 mutated human Slo1 apo
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-08-01
Authors: Yamanouchi, D., Nureki, O.
PDB entry 7yo6: Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose for 1.5min
Classification: HYDROLASE
Source organism: Lentinula edodes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2022-08-01
Authors: Yang, L.Y.
PDB entry 7yo7: Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose, 5 seconds
Classification: HYDROLASE
Source organism: Lentinula edodes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-08-01
Authors: Yang, L.Y.
PDB entry 7yo8: Crystal structure of fission yeast Hfl1 LIR fused to human GABARAPL2
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.805 Å
Deposited: 2022-08-01
Authors: Yamasaki, A., Noda, N.N.
PDB entry 7yo9: Crystal structure of fusion protein of human TP53INP2 LIR and human GABARAP
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-08-01
Authors: Yamasaki, A., Noda, N.N.
PDB entry 7yoa: High-resolution crystal structure of the mouse alpha-defensin cryptdin 14
Classification: ANTIBIOTIC
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2022-08-01
Authors: Yang, Y., Lu, W.
PDB entry 7yob: Crystal structure of Aldehyde dehydrogenase 1A1 from mouse
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-08-01
Authors: Zhang, X.Y., Ouyang, Z.Q.
PDB entry 7yoc: Crystal structure of Fhb7
Classification: TRANSFERASE
Source organism: Thinopyrum elongatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2022-08-01
Authors: Yang, J., Liang, K., Xiao, J.Y., Lei, X.G.