LiteFold/PDB huggingface dataset:
PDB entry 8qd7: Wdyg1p from W. dermatitidis catalyzes polyketide shortening in the biosynthesis of DHN-melanin
Classification: LYASE
Source organism: Exophiala dermatitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qd8: Wdyg1p in complex with 1,3-Dihydroxynaphthalene
Classification: LYASE
Source organism: Exophiala dermatitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qd9: Wdyg1p in complex with 1,3,6,8-Tetrahydroxynaphthalene
Classification: LYASE
Source organism: Exophiala dermatitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qda: Wdyg1p Ser256DHA (PMSF)
Classification: LYASE
Source organism: Exophiala dermatitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qdb: Wdyg1p Ser256DHA (PSF)
Classification: LYASE
Source organism: Exophiala dermatitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qdc: Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the covalent inhibitor GUE-3642 (compound 1 in publication)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-08-28
Authors: Strater, N., Claff, T., Sylvester, K., Mueller, C.E., Guetschow, M.
PDB entry 8qdd: Structure of mBaoJin at pH 8.5
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-08-28
Authors: Samygina, V.R., Vlaskina, A.V., Gabdulkhakov, A., Subach, O.M., Subach, F.V.
PDB entry 8qde: Crystal structure of a truncated human L-Lactate Dehydrogenase B protein in complex with NADH and oxamate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2023-08-29
Authors: Van Gysel, M., Wouters, J.
PDB entry 8qdf: Engineered LmrR with Met-89 replaced by para-boronophenylalanine
Classification: TRANSCRIPTION
Source organism: Lactococcus cremoris subsp. cremoris MG1363
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-29
Authors: Thunnissen, A.M.W.H., Rozeboom, H.J., Longwitz, L., Leveson-Gower, R.B., Roelfes, G.
PDB entry 8qdg: compound 1a bound KMT9 crystal structure
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.392 Å
Deposited: 2023-08-29
Authors: Sheng, W., Eric, M., Roland, S.
PDB entry 8qdh: Engineered LmrR carrying a cyclic boronate ester formed between Tris and p-boronophenylalanine at position 89
Classification: TRANSCRIPTION
Source organism: Lactococcus cremoris subsp. cremoris MG1363
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-08-29
Authors: Thunnissen, A.M.W.H., Rozeboom, H.J., Longwitz, L., Leveson-Gower, R.B., Roelfes, G.
PDB entry 8qdi: compound 1b bound KMT9 crystal structure
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.467 Å
Deposited: 2023-08-29
Authors: Sheng, W., Eric, M., Roland, S.
PDB entry 8qdj: Ntaya virus methyltransferase in complex wih Sinefungin
Classification: VIRAL PROTEIN
Source organism: Ntaya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-29
Authors: Krejcova, K., Boura, E., Klima, M.
PDB entry 8qdk: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with N-(furan-2-ylmethyl)-1H-benzimidazol-2-amine
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-29
Authors: Buetikofer, M., Orts, J.
PDB entry 8qdn: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with7-fluoro-N,N-dimethyl-1-benzofuran-2-carboxamide
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: Buetikofer, M., Orts, J.
PDB entry 8qdo: Crystal structure of the tegument protein UL82 (pp71) from Human Cytomegalovirus
Classification: VIRAL PROTEIN
Source organism: Human betaherpesvirus 5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-30
Authors: Bresch, I.P., Eberhage, J., Reubold, T.F., Eschenburg, S.
PDB entry 8qdp: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with N-[2-(5-fluoro-1H-indol-3-yl)ethyl]acetamide
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: Buetikofer, M., Orts, J.
PDB entry 8qdq: Vitis vinifera dimeric 13S-lipoxygenase LOXA in the closed conformation
Classification: OXIDOREDUCTASE
Source organism: Vitis vinifera
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-30
Authors: Wild, K., Sinning, I.
PDB entry 8qdr: Vitis vinifera dimeric 13S-lipoxygenase LOXA in a detergent bound open conformation
Classification: OXIDOREDUCTASE
Source organism: Vitis vinifera
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-30
Authors: Wild, K., Sinning, I.
PDB entry 8qds: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with N-(4-fluorophenyl)-2-(2-imino-1,3-thiazol-3-yl)acetamide
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: Buetikofer, M., Orts, J.
PDB entry 8qdt: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 2-fluoro-N-[(3-methyl-1H-pyrazol-4-yl)methyl]aniline
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: Buetikofer, M., Orts, J.
PDB entry 8qdu: Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: El-Khoury, R., Cabrero, C., Movilla, S., Thorpe, J.D., Roman, M., Orozco, M., Gonzalez, C., Damha, M.J.
PDB entry 8qdv: Structure of 14-3-3 zeta delta C with the bivalent tau-pS214-pS324 peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-30
Authors: van den Oetelaar, M.C.M., Brunsveld, L., Ottmann, C.
PDB entry 8qdw: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with N-methyl-1-(1-phenylpyrazol-4-yl)methanamine
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: Buetikofer, M., Orts, J.
PDB entry 8qdx: E. coli DNA gyrase bound to a DNA crossover
Classification: ISOMERASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-08-30
Authors: Vayssieres, M., Lamour, V.
PDB entry 8qdy: Crystal structure of human MAT2a bound to S-Adenosylmethionine and Compound 8
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2023-08-30
Authors: Schimpl, M.
PDB entry 8qdz: Crystal structure of human MAT2a bound to S-Adenosylmethionine and Compound 11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2023-08-30
Authors: Schimpl, M.
PDB entry 8qe0: Crystal structure of human MAT2a bound to S-Adenosylmethionine and Compound 12
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2023-08-30
Authors: Schimpl, M.
PDB entry 8qe1: Crystal structure of human MAT2a bound to S-Adenosylmethionine and Compound 15
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.095 Å
Deposited: 2023-08-30
Authors: Schimpl, M.
PDB entry 8qe2: Crystal structure of human MAT2a bound to S-Adenosylmethionine and Compound 21
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.109 Å
Deposited: 2023-08-30
Authors: Schimpl, M.
PDB entry 8qe3: Crystal structure of human MAT2a bound to S-Adenosylmethionine and Compound 31
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.089 Å
Deposited: 2023-08-30
Authors: Schimpl, M.
PDB entry 8qe4: Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: El-Khoury, R., Cabrero, C., Movilla, S., Friedland, D., Thorpe, J.D., Roman, M., Orozco, M., Gonzalez, C., Damha, M.
PDB entry 8qe5: Apo Hantaan virus polymerase in monomeric state
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-30
Authors: Durieux Trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8qe6: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethylmethanamine
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: Buetikofer, M., Orts, J.
PDB entry 8qe7: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 2-(methylsulfonylmethyl)-1H-benzimidazole
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-30
Authors: Buetikofer, M., Orts, J.
PDB entry 8qe8: Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to NMNAT1 substrate
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-08-30
Authors: Chrustowicz, J., Sherpa, D., Schulman, B.A.
PDB entry 8qe9: Complex between the 80a-Sak SSAP and the SaPI2 Stl master regulator
Classification: GENE REGULATION
Source organism: Staphylococcus aureus; Staphylococcus phage 80alpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-08-30
Authors: Debiasi-Anders, G., Mir-Sanchis, I.
PDB entry 8qea: Ultrafast structural transitions in an azobenzene photoswitch at near-atomic resolution: 96 fs structure
Classification: CELL CYCLE
Source organism: Bos taurus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-31
Authors: Weinert, T., Wranik, M., Seidel, H.-P., Church, J., Steinmetz, M.O., Schapiro, I., Standfuss, J.
PDB entry 8qeb: S. cerevisia Niemann-Pick type C protein NCR1 in GDN at pH 7.5
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-31
Authors: Frain, K.M., Dedic, E., Nel, L., Olesen, E., Stokes, D., Panyella Pedersen, B.
PDB entry 8qec: S. cerevisia Niemann-Pick type C protein NCR1 in GDN at pH 5.5
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-31
Authors: Frain, K.M., Dedic, E., Nel, L., Olesen, E., Stokes, D., Panyella Pedersen, B.
PDB entry 8qed: S. cerevisia Niemann-Pick type C protein NCR1 in LMNG at pH 5.5
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-08-31
Authors: Frain, K.M., Nel, L., Dedic, E., Olesen, E., Stokes, D., Panyella Pedersen, B.
PDB entry 8qee: S. cerevisia Niemann-Pick type C protein NCR1 in Peptidisc at pH 7.5
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2023-08-31
Authors: Frain, K.M., Dedic, E., Nel, L., Olesen, E., Stokes, D., Panyella Pedersen, B.
PDB entry 8qef: A carbohydrate esterase family 15 (CE15) glucuronoyl esterase from Phocaeicola ATCC 8482 bound to novel ligand.
Classification: HYDROLASE
Source organism: Phocaeicola vulgatus ATCC 8482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-08-31
Authors: Banerjee, S., Poulsen, J.N., Mazurkewich, S., Seveso, A., Larsbrink, J., Lo Leggio, L.
PDB entry 8qeg: Crystal structure of the G11 protein heterotrimer bound to YM-254890 inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-31
Authors: Muehle, J., Rodrigues, M.J., Guixa-Gonzalez, R., Deupi, X., Schertler, G.F.X.
PDB entry 8qeh: Crystal structure of the G11 protein heterotrimer bound to FR900359 inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-31
Authors: Muehle, J., Rodrigues, M.J., Guixa-Gonzalez, R., Deupi, X., Schertler, G.F.X.
PDB entry 8qei: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with N-(3-chlorophenyl)-2-pyrrolidin-1-ylacetamide
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-31
Authors: Buetikofer, M., Orts, J.
PDB entry 8qej: NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 5-(1H-indol-2-yl)pyrrolidin-2-one
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-31
Authors: Buetikofer, M., Orts, J.
PDB entry 8qek: Neck and tail of phage 812 after tail contraction (composite)
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-08-31
Authors: Cienikova, Z., Siborova, M., Fuzik, T., Plevka, P.
PDB entry 8qel: PKR kinase domain- eIF2alpha in complex with compound
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.451 Å
Deposited: 2023-08-31
Authors: Nawrotek, A., Vuillard, L., Miallau, L.
PDB entry 8qem: Neck channel of phage 812 after tail contraction (C1)
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2023-08-31
Authors: Cienikova, Z., Siborova, M., Fuzik, T., Plevka, P.
PDB entry 8qen: cryo-EM structure of apo Clostridioides difficile toxin B
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-01
Authors: Kinsolving, J., Bous, J., Structural Genomics Consortium (SGC)
PDB entry 8qeo: cryo-EM structure complex of Frizzled-7 and Clostridioides difficile toxin B
Classification: TOXIN
Source organism: Clostridioides difficile; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-09-01
Authors: Kinsolving, J., Bous, J.
PDB entry 8qep: RNA polymerase II bound to Alu RNA right arm
Classification: TRANSCRIPTION
Source organism: Sus scrofa domesticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-09-01
Authors: Tluckova, K., Bernecky, C.
PDB entry 8qeq: RNA polymerase II bound to minimal Alu RNA right arm in the alternative conformation
Classification: TRANSCRIPTION
Source organism: Sus scrofa domesticus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-01
Authors: Tluckova, K., Bernecky, C.
PDB entry 8qer: Pseudomonas aeruginosa FabF C164A in complex with 4-(1H-pyrazole-3-carbonylamino)pentanoic acid
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-09-01
Authors: Yadrykhins'ky, V., Brenk, R., Georgiou, C.
PDB entry 8qes: E coli NfsB with the unnatural amino acid, p-aminoPhe at position 124
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-09-01
Authors: Day, M.A., White, S.A., Hyde, E.I.
PDB entry 8qeu: Crystal structure of ornithine transcarbamylase from Arabidopsis thaliana (AtOTC) in complex with ornithine
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-01
Authors: Nielipinski, M., Pietrzyk-Brzezinska, A., Sekula, B.
PDB entry 8qev: Crystal structure of ornithine transcarbamylase from Arabidopsis thaliana (AtOTC) in complex with carbamoyl phosphate
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-09-01
Authors: Nielipinski, M., Pietrzyk-Brzezinska, A., Sekula, B.
PDB entry 8qew: Eosinophil Derived Neurotoxin/RNase 2 in complex with Tartrate
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-09-01
Authors: Li, J., Kang, X., Prats-Ejarque, G., Boix, E.
PDB entry 8qex: Streptavidin variant with a cobalt catalyst for CH metal-catalyzed hydrogen-atom-transfer (M-HAT)
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-01
Authors: Jakob, R.P., Chen, D., Ward, T.R.
PDB entry 8qey: Structure of human Asc1/CD98hc heteromeric amino acid transporter
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-09-01
Authors: Martinez-Molledo, M., Rullo-Tubau, J., Errasti-Murugarren, E., Palacin, M., Llorca, O.
PDB entry 8qez: Crystal structure of the AMPA receptor GluA2-L504Y-N775S ligand binding domain in complex with L-glutamate and positive allosteric modulator BPAM395 at 1.55A resolution
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-09-01
Authors: Dorosz, J., Laulumaa, S., Frydenvang, K., Kastrup, J.S.
PDB entry 8qf0: Atomic structure of wormGDH
Classification: IMMUNE SYSTEM
Source organism: Heligmosomoides bakeri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-09-01
Authors: Mourao, A., Geerlof, A., Sattler, M.
PDB entry 8qf1: STRUCTURE OF THE CATALYTIC SUBUNIT OF PROTEIN KINASE CK2 (CK2ALPHA') IN COMPLEX WITH THE NON-HYDROLYZABLE GTP ANALOGUE GMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-09-01
Authors: Werner, C., Lindenblatt, D., Niefind, K.
PDB entry 8qf2: Beta-L-Arabinofurano-cyclitol Aziridines are Cysteine-directed Broad-spectrum Inhibitors and Activity-based Probes for Retaining Beta-L-arabinofuranosidases
Classification: HYDROLASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-09-02
Authors: Borlandelli, V., Offen, W.A., Moroz, O., Nin-Hill, A., McGregor, N., Binkhorst, L., Armstrong, Z., Ishiwata, A., Artola, M., Rovira, C., Davies, G.J., Overkleeft, H.
PDB entry 8qf3: 1.25-A structure of anti-Arc nanobody H11
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-09-02
Authors: Godoy Munoz, J.M., Kursula, P.
PDB entry 8qf4: Complex between N-lobe of Arc and nanobody H11
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2023-09-02
Authors: Godoy Munoz, J.M., Kursula, P.
PDB entry 8qf5: Complex between N-lobe of Arc and nanobody E5
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-02
Authors: Godoy Munoz, J.M., Kursula, P.
PDB entry 8qf6: Sulfoxide synthase from Chloracidobacterium thermophilum, EgtB type II, in complex with iron and trimethylhistidine
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-03
Authors: Vasseur, C.M., Stampfli, A.R., Seebeck, F.P.
PDB entry 8qf7: Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylbenzyl)phenylsulfonamido)methyl)phenyl)glycine
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.225 Å
Deposited: 2023-09-04
Authors: Angeli, A., Ferraroni, M.
PDB entry 8qf8: GH146 beta-L-arabinofuranosidase from Bacteroides thetaioatomicron in complex with beta-l-arabinofurano cyclophellitol aziridine
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-09-04
Authors: Borlandelli, V., Offen, W., Moroz, O.V., Nin-Hill, A., McGregor, N., Binkhorst, L., Armstrong, Z., Ishiwata, A., Artola, M., Rovira, C., Davies, G.J., Overkleeft, H.
PDB entry 8qf9: Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylphenethyl)phenylsulfonamido)methyl)phenyl)glycine
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.277 Å
Deposited: 2023-09-04
Authors: Angeli, A., Ferraroni, M.
PDB entry 8qfa: Solution structure of the extreme C-terminus of the Bordetella pertussis filamentous hemagglutinin prodomain
Classification: CELL ADHESION
Source organism: Bordetella pertussis
Experimental method: SOLUTION NMR
Deposited: 2023-09-04
Authors: Jurnecka, D., Chmelik, J., Bumba, L.
PDB entry 8qfb: Crystal structure of human MPP8 C-terminal region (residues 565-860)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2023-09-04
Authors: Prigozhin, D.M., Modis, Y.
PDB entry 8qfc: UFL1 E3 ligase bound 60S ribosome
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-04
Authors: Makhlouf, L., Zeqiraj, E., Kulathu, Y.
PDB entry 8qfd: UFL1 E3 ligase bound 60S ribosome
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-09-04
Authors: Makhlouf, L., Kulathu, Y., Zeqiraj, E.
PDB entry 8qfe: Cryogenic crystal structure of the Photoactivated Adenylate Cyclase OaPAC
Classification: LYASE
Source organism: Oscillatoria acuminata PCC 6304
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-04
Authors: Chretien, A., Nagel, M.F., Botha, S., de Wijn, R., Brings, L., Doerner, K., Han, H., Koliyadu, J., Letrun, R., Round, A., Sato, T., Schmidt, C., Secareanu, R., von Stetten, D., Vakili, M., Wrona, A., Bean, R., Mancuso, A., Schulz, J., Pearson, A., Kottke, T., Lorenzen, K., Schubert, R.
PDB entry 8qff: Cryogenic crystal structure of the Photoactivated Adenylate Cyclase OaPAC with ATP bound
Classification: LYASE
Source organism: Oscillatoria acuminata PCC 6304
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-11
Authors: Chretien, A., Nagel, M.F., Botha, S., de Wijn, R., Brings, L., Doerner, K., Han, H., C.P.Koliyadu, J., Letrun, R., Round, A., Sato, T., Schmidt, C., Secareanu, R., von Stetten, D., Vakili, M., Wrona, A., Bean, R., Mancuso, A., Schulz, J., R.Pearson, A., Kottke, T., Lorenzen, K., Schubert, R.
PDB entry 8qfg: Cryogenic crystal structure of the Photoactivated Adenylate Cyclase OaPAC after 5 seconds of blue light illumination
Classification: LYASE
Source organism: Oscillatoria acuminata PCC 6304
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-04
Authors: Chretien, A., Nagel, M.F., Botha, S., de Wijn, R., Brings, L., Doerner, K., Han, H., C.P.Koliyadu, J., Letrun, R., Round, A., Sato, T., Schmidt, C., Secareanu, R., von Stetten, D., Vakili, M., Wrona, A., Bean, R., Mancuso, A., Schulz, J., R.Pearson, A., Kottke, T., Lorenzen, K., Schubert, R.
PDB entry 8qfh: Room temperature crystal structure of the Photoactivated Adenylate Cyclase OaPAC with ATP bound
Classification: LYASE
Source organism: Oscillatoria acuminata PCC 6304
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-04
Authors: Chretien, A., Nagel, M.F., Botha, S., de Wijn, R., Brings, L., Doerner, K., Han, H., C.P.Koliyadu, J., Letrun, R., Round, A., Sato, T., Schmidt, C., Secareanu, R., von Stetten, D., Vakili, M., Wrona, A., Bean, R., Mancuso, A., Schulz, J., R.Pearson, A., Kottke, T., Lorenzen, K., Schubert, R.
PDB entry 8qfi: Room temperature crystal structure of the Photoactivated Adenylate Cyclase OaPAC after blue light excitation at 1.8 us delay
Classification: LYASE
Source organism: Oscillatoria acuminata PCC 6304
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-04
Authors: Chretien, A., Nagel, M.F., Botha, S., de Wijn, R., Brings, L., Doerner, K., Han, H., C.P.Koliyadu, J., Letrun, R., Sato, T., Round, A., Schmidt, C., Secareanu, R., von Stetten, D., Vakili, M., Wrona, A., Bean, R., Mancuso, A., Schulz, J., R.Pearson, A., Kottke, T., Lorenzen, K., Schubert, R.
PDB entry 8qfj: Room temperature crystal structure of the Photoactivated Adenylate Cyclase OaPAC after blue light excitation at 2.3 us delay
Classification: LYASE
Source organism: Oscillatoria acuminata PCC 6304
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-04
Authors: Chretien, A., Nagel, M.F., Botha, S., de Wijn, R., Brings, L., Doerner, K., Han, H., C.P.Koliyadu, J., Letrun, R., Round, A., Sato, T., Schmidt, C., Secareanu, R., von Stetten, D., Vakili, M., Wrona, A., Bean, R., Mancuso, A., Schulz, J., R.Pearson, A., Kottke, T., Lorenzen, K., Schubert, R.
PDB entry 8qfk: Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylbenzyl)methylsulfonamido)methyl)phenyl)glycine
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2023-09-04
Authors: Angeli, A., Ferraroni, M.
PDB entry 8qfl: Ergothioneine dioxygenase from Thermocatellispora tengchongensis in complex with iron
Classification: OXIDOREDUCTASE
Source organism: Thermocatellispora tengchongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-09-04
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8qfm: Ergothioneine dioxygenase from Thermocatellispora tengchongensis in complex with manganese
Classification: OXIDOREDUCTASE
Source organism: Thermocatellispora tengchongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-04
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8qfn: Ergothioneine dioxygenase from Thermocatellispora tengchongensis in complex with manganese and in presence of catalase aerobic
Classification: OXIDOREDUCTASE
Source organism: Thermocatellispora tengchongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-09-04
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8qfo: Ergothioneine dioxygenase, variant Y149F, from Thermocatellispora tengchongensis in complex with manganese
Classification: OXIDOREDUCTASE
Source organism: Thermocatellispora tengchongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-09-04
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8qfp: Ergothioneine dioxygenase from Thermocatellispora tengchongensis in complex with manganese and in presence of catalase anaerobic
Classification: OXIDOREDUCTASE
Source organism: Thermocatellispora tengchongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-04
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8qfq: Ergothioneine dioxygenase, variant H147A, from Thermocatellispora tengchongensis in complex with manganese
Classification: OXIDOREDUCTASE
Source organism: Thermocatellispora tengchongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-04
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8qfr: Ergothioneine dioxygenase from Thermocatellispora tengchongensis in complex with nickel and substrate (anaerobic)
Classification: OXIDOREDUCTASE
Source organism: Thermocatellispora tengchongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-04
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8qfs: Cryo-EM structure of SidH from Legionella pneumophila
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-09-04
Authors: Sharma, R., Weis, F., Bhogaraju, S.
PDB entry 8qft: X-ray structure of non-toxic non-hemagglutinin (NTNH) protein from botulinum neurotoxin serotype X
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-09-04
Authors: Skerlova, J., Masuyer, G., Stenmark, P.
PDB entry 8qfu: Diels-Alderase AbyU mutant - Y76F
Classification: LIGASE
Source organism: Micromonospora maris AB-18-032
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-09-05
Authors: Tiwari, K., Burton, N.M., Yang, S., Race, P.R.
PDB entry 8qfv: 305A Vipp1 helical tubes in the presence of EPL
Classification: LIPID BINDING PROTEIN
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2023-09-05
Authors: Junglas, B., Sachse, C.
PDB entry 8qfw: Murine pyridoxal phosphatase in complex with 7,8-dihydroxyflavone
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-05
Authors: Schindelin, H., Gohla, A.
PDB entry 8qfx: Human Angiotensin-1 converting enzyme N-domain in complex with the lactotripeptide IPP
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-09-05
Authors: Gregory, K.S., Acharya, K.R., Cozier, G.E.
PDB entry 8qfy: Crystal structure of high affinity TCR in complex with pHLA harbouring bacterial peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-09-05
Authors: Pengelly, R.J., Robinson, R.A.
PDB entry 8qfz: TSLP-Bicycle complex
Classification: HORMONE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-09-05
Authors: Petersen, J.
PDB entry 8qg0: Archaeoglobus fulgidus AfAgo complex with AfAgo-N protein (fAfAgo) bound with 17 nt RNA guide and 17 nt DNA target
Classification: DNA BINDING PROTEIN
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-09-05
Authors: Manakova, E.N., Zaremba, M., Pocevicuite, R., Golovinas, E., Zagorskaite, E., Silanskas, A.
PDB entry 8qg1: Crystal structure of oxidized respiratory Complex I subunits NuoEF from Aquifex aeolicus bound to ADP-ribose
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-05
Authors: Wohlwend, D., Friedrich, T.
PDB entry 8qg2: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qg3: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qg4: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qg5: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qg6: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.142 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qg7: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qg8: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qg9: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qga: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgb: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgc: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qge: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgf: CRYSTAL STRUCTURE OF AS-ISOLATED M148L MUTANT OF THREE-DOMAIN HEME-CU NITRITE REDUCTASE FROM RALSTONIA PICKETTII
Classification: OXIDOREDUCTASE
Source organism: Ralstonia pickettii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-09-05
Authors: Petchyam, N., Antonyuk, S., Hasnain, S.S.
PDB entry 8qgg: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgh: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgi: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgj: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgk: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgl: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgm: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgn: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgo: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-09-05
Authors: Gelin, M., Labesse, G., Lionne, C.
PDB entry 8qgr: Stopper protein of phage 812 in closed conformation
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-05
Authors: Cienikova, Z., Popelarova, B., Plevka, P.
PDB entry 8qgt: 5'vRNA-bound Hantaan virus polymerase in monomeric intermediate state
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-05
Authors: Durieux Trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8qgu: Apo Hantaan virus polymerase in dimeric state
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-09-05
Authors: Durieux Trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8qgv: Human Carbonic Anhydrase I in complex with 4-(5-acetyl-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidin-4-yl)benzenesulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-09-05
Authors: Angeli, A., Ferraroni, M.
PDB entry 8qgw: Crystal structure of oxidized respiratory Complex I subunits NuoEF from Aquifex aeolicus bound to oxidized 3-acetylpyridine adenine dinucleotide
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-09-06
Authors: Wohlwend, D., Friedrich, T.
PDB entry 8qgx: Complex between human neutrophil elastase with nanobody NbE201
Classification: HYDROLASE
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-06
Authors: Morales-Yanez, F., Redeghieri, P., Moray, J., Dumoulin, M., Kerff, F.
PDB entry 8qgy: Cryo-EM structure of C-terminally truncated Apoptosis signal-regulating kinase 1 (ASK1)
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2023-09-06
Authors: Kosek, D., Honzejkova, K., Obsilova, V., Obsil, T.
PDB entry 8qgz: NbE201 a nanobody binding human neutrophil elastase
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-06
Authors: Redeghieri, P., Morales-Yanez, F., Moray, J., Dumoulin, M., Kerff, F.
PDB entry 8qh0: Crystal structure of the SARS-CoV-2 RBD with the antibody Cv2.3194
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-09-06
Authors: Fernandez, I., Rey, F.A.
PDB entry 8qh1: Crystal structure of the SARS-CoV-2 RBD from the Omicron BA4 variant with the antibody Cv2.3194
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-09-06
Authors: Fernandez, I., Rey, F.A.
PDB entry 8qh2: Crystal structure of chimeric UAP1L1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-09-06
Authors: Chen, X., Yan, K., Bartual, S., van Aalten, D.
PDB entry 8qh3: 5'vRNA-bound Hantaan virus polymerase in monomeric active state
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-09-06
Authors: Durieux Trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8qh4: Crystal structure of reduced respiratory Complex I subunits NuoEF from Aquifex aeolicus bound to oxidized 3-acetylpyridine adenine dinucleotide
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-09-06
Authors: Wohlwend, D., Friedrich, T.
PDB entry 8qh5: CryoEM structure of UVSSA(VHS)-CSA-DDB1-DDA1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-06
Authors: Lee, S.-H., Sixma, T.K.
PDB entry 8qh6: Crystal structure of IpgC in complex with a follow-up compound based on J20
Classification: CHAPERONE
Source organism: Shigella flexneri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-06
Authors: Wallbaum, J.E., Heine, A., Reuter, K.
PDB entry 8qh7: Crystal structure of respiratory Complex I subunits NuoEF from Aquifex aeolicus bound to reduced 3-acetylpyridine adenine dinucleotide (without reducing agent)
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-06
Authors: Wohlwend, D., Friedrich, T.
PDB entry 8qh8: Human Carbonic Anhydrase II in complex with Lasamide (2,4-Dichloro 5-sulfamoyl benzoic acid)
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2023-09-06
Authors: Baroni, C., Ferraroni, M., Carta, F.
PDB entry 8qh9: X-ray structure of Danio rerio histone deacetylase 6 (HDAC6) CD2 in complex with a S-29b
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-09-07
Authors: Barinka, C., Motlova, L.
PDB entry 8qhc: Cryo-EM structure of SidH from Legionella pneumophila in complex with LubX
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli 'BL21-Gold(DE3)pLysS AG'; Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-07
Authors: Sharma, R., Adams, M., Bhogaraju, S.
PDB entry 8qhd: Hantaan virus polymerase in hexameric state
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-07
Authors: Durieux Trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8qhe: Crystal structure IR-09
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus lentulus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-09-07
Authors: Levy, C.W.
PDB entry 8qhf: Corynebacterium glutamicum mycoloyltransferase C acyl-enzyme intermediate
Classification: TRANSFERASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-09-08
Authors: Li de la Sierra-Gallay, I., Lesur, E.
PDB entry 8qhg: Human Carbonic Anhydrase IX mimic in complex with Lasamide (2,4-Dichloro 5-sulfamoyl benzoic acid)
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-09-08
Authors: Baroni, C., Ferraroni, M., Carta, F.
PDB entry 8qhh: NMR solution structure of the green kiwi fruit allergen Act d 8.0101
Classification: ALLERGEN
Source organism: Actinidia deliciosa
Experimental method: SOLUTION NMR
Deposited: 2023-09-08
Authors: Zeindl, R., Tollinger, M.
PDB entry 8qhi: NMR solution structure of the golden kiwi fruit allergen Act c 8.0101
Classification: ALLERGEN
Source organism: Actinidia deliciosa
Experimental method: SOLUTION NMR
Deposited: 2023-09-08
Authors: Zeindl, R., Tollinger, M.
PDB entry 8qhj: Human Carbonic Anhydrase XII mimic in complex with Lasamide (2,4-Dichloro-5-sulfamoyl benzoic acid)
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-09-08
Authors: Baroni, C., Ferraroni, M., Carta, F.
PDB entry 8qhk: Crystal structure of reduced respiratory Complex I subunits NuoEF from Aquifex aeolicus bound to reduced 3-acetylpyridine adenine dinucleotide
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-09-08
Authors: Wohlwend, D., Friedrich, T., Bucka, S.
PDB entry 8qhl: Human Angiotensin-1 converting enzyme N-domain in complex with the lactotripeptide VPP
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-08
Authors: Gregory, K.S., Cozier, G.E., Acharya, K.R.
PDB entry 8qhm: DNA mimic Foldamer with sticky ends
Classification: UNKNOWN FUNCTION
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-09-08
Authors: Deepak, D., Loos, M., Huc, I.
PDB entry 8qhn: Streptococcus pyogenes GapN in complex with NADPH and erythrose-4-phosphate
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-09-08
Authors: Wirsing, R., Schindelin, H.
PDB entry 8qho: Human Carbonic Anhydrase II in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-09-08
Authors: Angeli, A., Ferraroni, M.
PDB entry 8qhp: Cysteine tRNA ligase homodimer
Classification: LIGASE
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-08
Authors: Pacesa, M., Correia, B.E., Levy, E.D.
PDB entry 8qhq: Crystal structure of human DNPH1 bound to hmdUMP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-09-09
Authors: Rzechorzek, N.J., West, S.C.
PDB entry 8qhr: Crystal structure of the human DNPH1 glycosyl-enzyme intermediate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-09-09
Authors: Rzechorzek, N.J., West, S.C.
PDB entry 8qhs: Cryo-EM structure of the monocin tail-tube, MttP.
Classification: TOXIN
Source organism: Listeria monocytogenes 10403S
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-09-10
Authors: Nadejda, S., Lichtenstein, R., Schlussel, S., Azulay, G., Borovok, I., Holdengraber, V., Elad, N., Wolf, S.G., Zalk, R., Zarivach, R., Frank, G.A., Herskovits, A.A.
PDB entry 8qhu: CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : LM32Cs1C1 snoRNA overexpression
Classification: RIBOSOME
Source organism: Leishmania major strain Friedlin
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2023-09-10
Authors: Rajan, K.S., Yonath, A., Bashan, A.
PDB entry 8qhv: 275A Vipp1 helical tubes in the presence of EPL
Classification: LIPID BINDING PROTEIN
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2023-09-11
Authors: Junglas, B., Sachse, C.