LiteFold/PDB huggingface dataset:
PDB entry 4yke: Crystal structure of eukaryotic Mre11 catalytic domain from Chaetomium thermophilum
Classification: HYDROLASE
Source organism: Chaetomium thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.783 Å
Deposited: 2015-03-04
Authors: Seifert, F.U., Lammens, K., Hopfner, K.-P.
PDB entry 4ykf: Crystal Structure of the Alkylhydroperoxide Reductase subunit F (AhpF) with NADH from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-03-04
Authors: Kamariah, N., Manimekalai, M.S.S., Gruber, G., Eisenhaber, F., Eisenhaber, B.
PDB entry 4ykg: Crystal Structure of the Alkylhydroperoxide Reductase subunit F (AhpF) with NAD+ from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-03-04
Authors: Kamariah, N., Manimekalai, M.S.S., Gruber, G., Eisenhaber, F., Eisenhaber, B.
PDB entry 4ykh: Thirty minutes iron loaded human H ferritin
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2015-03-04
Authors: Pozzi, C., Di Pisa, F., Mangani, S.
PDB entry 4yki: Mnemiopsis leidyi ML032222a iGluR LBD glycine complex
Classification: MEMBRANE PROTEIN
Source organism: Mnemiopsis leidyi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2015-03-04
Authors: Alberstein, R.G., Mayer, M.L.
PDB entry 4ykj: Mnemiopsis leidyi ML032222a iGluR LBD complex with Alanine
Classification: MEMBRANE PROTEIN
Source organism: Mnemiopsis leidyi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.401 Å
Deposited: 2015-03-04
Authors: Alberstein, R.G., Mayer, M.L.
PDB entry 4ykk: Mnemiopsis leidyi ML032222a iGluR LBD D-serine complex
Classification: MEMBRANE PROTEIN
Source organism: Mnemiopsis leidyi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2015-03-04
Authors: Alberstein, R.G., Mayer, M.L.
PDB entry 4ykl: Hnt3 in complex with DNA and guanosine
Classification: Hydrolase/DNA
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-03-04
Authors: Jacewicz, A., Chauleau, M., Shuman, S.
PDB entry 4ykm: Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y:A32W:F3Q mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 1.58 angstrom resolution
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2015-03-04
Authors: Nosrati, M., Geiger, J.H.
PDB entry 4ykn: Pi3K alpha lipid kinase with Active Site Inhibitor
Classification: Transferase/Transferase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-03-04
Authors: Elkins, P.A.
PDB entry 4yko: Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y:A32Y:F3Q mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 1.58 angstrom resolution
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2015-03-04
Authors: Nosrati, M., Geiger, J.
PDB entry 4ykp: Mnemiopsis leidyi ML032222a iGluR LBD serine complex
Classification: MEMBRANE PROTEIN
Source organism: Mnemiopsis leidyi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2015-03-04
Authors: Alberstein, R.G., Mayer, M.L.
PDB entry 4ykq: Heat Shock Protein 90 Bound to CS301
Classification: CHAPERONE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2015-03-04
Authors: Kang, Y.N., Stuckey, J.A.
PDB entry 4ykr: Heat Shock Protein 90 Bound to CS302
Classification: CHAPERONE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2015-03-04
Authors: Kang, Y.N., Stuckey, J.A.
PDB entry 4ykt: Heat Shock Protein 90 Bound to CS307
Classification: CHAPERONE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-03-04
Authors: Kang, Y.N., Stuckey, J.A.
PDB entry 4yku: Heat Shock Protein 90 Bound to CS311
Classification: CHAPERONE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-03-04
Authors: Kang, Y.N., Stuckey, J.A.
PDB entry 4ykw: Heat Shock Protein 90 Bound to CS312
Classification: CHAPERONE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-03-04
Authors: Kang, Y.N., Stuckey, J.A.
PDB entry 4ykx: Heat Shock Protein 90 Bound to CS318
Classification: CHAPERONE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-03-04
Authors: Kang, Y.N., Stuckey, J.A.
PDB entry 4yky: Heat Shock Protein 90 Bound to CS319
Classification: CHAPERONE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2015-03-04
Authors: Kang, Y.N., Stuckey, J.A.
PDB entry 4ykz: Heat Shock Protein 90 Bound to CS320
Classification: CHAPERONE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-03-04
Authors: Kang, Y.N., Stuckey, J.A.
PDB entry 4yl0: Crystal Structures of mPGES-1 Inhibitor Complexes
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2015-03-04
Authors: Luz, J.G., Antonysamy, S., Kuklish, S.L., Fisher, M.J.
PDB entry 4yl1: Crystal Structures of mPGES-1 Inhibitor Complexes
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2015-03-04
Authors: Luz, J.G., Antonysamy, S., Kuklish, S.L., Fisher, M.J.
PDB entry 4yl2: Aerococcus viridans L-lactate oxidase Y191F mutant
Classification: OXIDOREDUCTASE
Source organism: Aerococcus viridans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-03-04
Authors: Rainer, D., Nidetzky, B., Wilson, D.K.
PDB entry 4yl3: Crystal Structures of mPGES-1 Inhibitor Complexes
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2015-03-04
Authors: Luz, J.G., Antonysamy, S., Kuklish, S.L., Fisher, M.J.
PDB entry 4yl4: 1.1 Angstrom resolution X-ray Crystallographic Structure of Psudoazurin
Classification: ELECTRON TRANSPORT
Source organism: Achromobacter cycloclastes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2015-03-05
Authors: Yamaguchi, T., Asamura, S., Takashina, A., Unno, M., Kohzuma, T.
PDB entry 4yl5: Structure of a putative phosphomethylpyrimidine kinase from Acinetobacter baumannii
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii IS-123
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-03-04
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 4yl6: Crystal structure of truncated cerebral cavernous malformation 2 C-terminal adaptor domain in complex with an internal helix of mitogen-activated protein kinase kinase kinase 3
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-03-05
Authors: Ding, J., Wang, X., Wang, D.C.
PDB entry 4yl7: Crystal structure of the indole prenyltransferase MpnD from Marinactinospora thermotolerans
Classification: TRANSFERASE
Source organism: Marinactinospora thermotolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2015-03-05
Authors: Mori, T., Morita, H., Abe, I.
PDB entry 4yl8: Crystal structure of the Crumbs/Moesin complex
Classification: PROTEIN BINDING
Source organism: Drosophila melanogaster; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-03-05
Authors: Wei, Z., Li, Y., Zhang, M.
PDB entry 4yl9: Crystal Structure of wild-type of hsp14.1 from Sulfolobus solfatataricus P2
Classification: CHAPERONE
Source organism: Sulfolobus solfataricus (strain 98/2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.353 Å
Deposited: 2015-03-05
Authors: Liu, L., Chen, J.Y., Yun, C.H.
PDB entry 4yla: Crystal structure of the indole prenyltransferase MpnD complexed with indolactam V and DMSPP
Classification: TRANSFERASE
Source organism: Marinactinospora thermotolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-03-05
Authors: Mori, T., Morita, H., Abe, I.
PDB entry 4ylb: Crystal Structure of A102D mutant of hsp14.1 from Sulfolobus solfatataricus P2
Classification: CHAPERONE
Source organism: Sulfolobus solfataricus (strain 98/2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.501 Å
Deposited: 2015-03-05
Authors: Liu, L., Chen, J.Y., Yun, C.H.
PDB entry 4ylc: Crystal Structure of Del-C4 mutant of hsp14.1 from Sulfolobus solfatataricus P2
Classification: CHAPERONE
Source organism: Sulfolobus solfataricus (strain 98/2)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2015-03-05
Authors: Liu, L., Chen, J.Y., Yun, C.H.
PDB entry 4yld: The crystal structure of Sclerotium Rolfsii lectin variant 1 (SSR1)
Classification: SUGAR BINDING PROTEIN
Source organism: Athelia rolfsii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-03-05
Authors: Kantsadi, A.L., Peppa, V.I., Leonidas, D.D.
PDB entry 4yle: Crystal structure of an ABC transpoter solute binding protein (IPR025997) from Burkholderia multivorans (Bmul_1631, Target EFI-511115) with an unknown ligand modelled as alpha-D-erythrofuranose
Classification: TRANSPORT PROTEIN
Source organism: Burkholderia multivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-03-05
Authors: Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Koss, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
PDB entry 4ylf: Insights into flavin-based electron bifurcation via the NADH-dependent reduced ferredoxin-NADP oxidoreductase structure
Classification: OXIDOREDUCTASE
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2015-03-05
Authors: Ermler, U., Thauer, R.K., Demmer, J.K., Huang, H., Wang, S., Demmer, U.
PDB entry 4ylg: Structure of an ADP ribosylation factor from Entamoeba histolytica HM-1:IMSS bound to Mg-GDP
Classification: SIGNALING PROTEIN
Source organism: Entamoeba histolytica HM-1:IMSS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-03-05
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 4ylh: Crystal structure of DpgC with bound substrate analog and Xe on oxygen diffusion pathway
Classification: HYDROLASE
Source organism: Streptomyces toyocaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2015-03-05
Authors: Li, K., Di Russo, N.V., Condurso, H.L., Roitberg, A.E., Bruner, S.D.
PDB entry 4yli: CL-K1 trimer
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2015-03-05
Authors: Wallis, R., Girija, U.V., Gingras, A.R., Moody, P.C.E., Marshall, J.E.
PDB entry 4ylj: Crystal structure of DYRK1A in complex with 10-Iodo-substituted 11H-indolo[3,2-c]quinoline-6-carboxylic acid inhibitor 5j
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2015-03-05
Authors: Chaikuad, A., Falke, H., Nowak, R., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Kunick, C., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 4ylk: Crystal structure of DYRK1A in complex with 10-Chloro-substituted 11H-indolo[3,2-c]quinolone-6-carboxylic acid inhibitor 5s
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-03-05
Authors: Chaikuad, A., Falke, H., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Kunick, C., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 4yll: Crystal structure of DYRK1AA in complex with 10-Bromo-substituted 11H-indolo[3,2-c]quinolone-6-carboxylic acid inhibitor 5t
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-03-05
Authors: Chaikuad, A., Falke, H., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Kunick, C., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 4ylm: Structure of PvcB, an Fe, alpha-ketoglutarate dependent oxygenase from an isonitrile synthetic pathway
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa (PAK)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-03-05
Authors: Zhu, J., Lippa, G.M., Gulick, A.M., Tipton, P.A.
PDB entry 4yln: E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 5.5 Å
Deposited: 2015-03-05
Authors: Zuo, Y., Steitz, T.A.
PDB entry 4ylo: E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 6 Å
Deposited: 2015-03-05
Authors: Zuo, Y., Steitz, T.A.
PDB entry 4ylp: E. coli Transcription Initiation Complex - 16-bp spacer and 5-nt RNA
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 5.5 Å
Deposited: 2015-03-05
Authors: Zuo, Y., Steitz, T.A.
PDB entry 4ylq: Crystal Structure of a FVIIa-Trypsin Chimera (FT) in Complex with Soluble Tissue Factor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-03-05
Authors: Sorensen, A.B., Svensson, L.A., Gandhi, P.S.
PDB entry 4ylr: Tubulin Glutamylase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2015-03-05
Authors: Garnham, C.P., Vemu, A., Wilson-Kubalek, E.M., Yu, I., Szyk, A., Lander, G.C., Milligan, R.A., Roll-Mecak, A.
PDB entry 4yls: Tubulin Glutamylase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-03-05
Authors: Garnham, C.P., Vemu, A., Wilson-Kubalek, E.M., Yu, I., Szyk, A., Lander, G.C., Milligan, R.A., Roll-Mecak, A.
PDB entry 4ylt: Crystal structure of beta-ketoacyl-ACP synthase III (FabH) from Yersinia pestis
Classification: TRANSFERASE
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-03-05
Authors: Nanson, J.D., Forwood, J.K.
PDB entry 4ylu: X-ray structure of MERS-CoV nsp5 protease bound with a non-covalent inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Middle East respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-03-05
Authors: Tomar, S., Mesecar, A.D.
PDB entry 4ylw: Crystal structure of human dihydroorotate dehydrogenase (DHODH) with No.33 compound
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2015-03-06
Authors: Wu, D., Ouyang, P., Lu, W., Huang, J.
PDB entry 4yly: Crystal structure of peptidyl-tRNA hydrolase from a Gram-positive bacterium, staphylococcus aureus at 2.25 angstrom resolution
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-03-06
Authors: Zhang, F., Song, Y., Li, X., Teng, M.K.
PDB entry 4ylz: Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with lacto-N-neotetraose (LNnT)
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-03-06
Authors: Bum-Erdene, K., Blanchard, H.
PDB entry 4ym0: Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with lacto-N-tetraose (LNT)
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-03-06
Authors: Bum-Erdene, K., Blanchard, H.
PDB entry 4ym1: Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with 2'-fucosyllactose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-03-06
Authors: Bum-Erdene, K., Blanchard, H.
PDB entry 4ym2: Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with lactose-3'-sulfate
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-03-06
Authors: Bum-Erdene, K., Blanchard, H.
PDB entry 4ym3: Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2015-03-06
Authors: Bum-Erdene, K., Blanchard, H.
PDB entry 4ym4: Truncated Human TIFA in complex with its Thr9 phosphorylated N-terminal peptide 1-15
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2015-03-06
Authors: Weng, J.H., Wei, T.Y.W., Hsieh, Y.C., Huang, C.C.F., Wu, P.Y.G., Chen, E.S.W., Huang, K.F., Chen, C.J., Tsai, M.D.
PDB entry 4ym5: Crystal structure of the human nucleosome containing 6-4PP (inside)
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.005 Å
Deposited: 2015-03-06
Authors: Osakabe, A., Tachiwana, H., Kagawa, W., Horikoshi, N., Matsumoto, S., Hasegawa, M., Matsumoto, N., Toga, T., Yamamoto, J., Hanaoka, F., Thoma, N.H., Sugasawa, K., Iwai, S., Kurumizaka, H.
PDB entry 4ym6: Crystal structure of the human nucleosome containing 6-4PP (outside)
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.514 Å
Deposited: 2015-03-06
Authors: Osakabe, A., Tachiwana, H., Kagawa, W., Horikoshi, N., Matsumoto, S., Hasegawa, M., Matsumoto, N., Toga, T., Yamamoto, J., Hanaoka, F., Thoma, N.H., Sugasawa, K., Iwai, S., Kurumizaka, H.
PDB entry 4ym7: RNA polymerase I structure with an alternative dimer hinge
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 5.5 Å
Deposited: 2015-03-06
Authors: Kostrewa, D., Kuhn, C.-D., Engel, C., Cramer, P.
PDB entry 4ym8: Crystal structure of hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-03-06
Authors: Sugahara, M., Nakane, T., Suzuki, M., Nango, E.
PDB entry 4ym9: Crystal structure of Porcine Pancreatic Elastase (PPE) in complex with the novel inhibitor JM102
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-03-06
Authors: Hofbauer, S., Brito, J.A., Mulchande, J., Nogly, P., Pessanha, M., Moreira, R., Archer, M.
PDB entry 4yma: Structure of the ligand-binding domain of GluA2 in complex with the antagonist CNG10109
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.895 Å
Deposited: 2015-03-06
Authors: Moller, C., Tapken, D., Kastrup, J.S., Frydenvang, K.
PDB entry 4ymb: Structure of the ligand-binding domain of GluK1 in complex with the antagonist CNG10111
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2015-03-06
Authors: Moller, C., Tapken, D., Kastrup, J.S., Frydenvang, K.
PDB entry 4ymc: Lambda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGATCCGG)2
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2015-03-06
Authors: Gurung, S.P., Hall, J.P., Cardin, C.J.
PDB entry 4ymd: CL-K1 trimer bound to man(alpha1-2)man
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2015-03-06
Authors: Wallis, R., Venkatraman Girija, U., Gingras, A.R., Moody, P.C.E., Marshall, J.E.
PDB entry 4yme: Crystal structure of a sensory box/GGDEF family protein (CC_0091) from Caulobacter crescentus CB15 at 1.40 A resolution (PSI Community Target, Shapiro)
Classification: LYASE
Source organism: Caulobacter crescentus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-03-06
Authors: Joint Center for Structural Genomics (JCSG), Shapiro, L.
PDB entry 4ymg: Crystal structure of SAM-bound Podospora anserina methyltransferase PaMTH1
Classification: TRANSFERASE
Source organism: Podospora anserina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.899 Å
Deposited: 2015-03-06
Authors: Kudlinzki, D., Linhard, V.L., Chatterjee, D., Saxena, K., Sreeramulu, S., Schwalbe, H.
PDB entry 4ymh: Crystal structure of SAH-bound Podospora anserina methyltransferase PaMTH1
Classification: TRANSFERASE
Source organism: Podospora anserina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.876 Å
Deposited: 2015-03-06
Authors: Kudlinzki, D., Linhard, V.L., Chatterjee, D., Saxena, K., Sreeramulu, S., Schwalbe, H.
PDB entry 4ymi: Crystal structure of probable nicotinate-nucleotide adenylyltransferase from Mycobacterium abcessus in complex with NADP
Classification: TRANSFERASE
Source organism: Mycobacterium abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-03-06
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 4ymj: (R)-2-Phenylpyrrolidine Substitute Imidazopyridazines: a New Class of Potent and Selective Pan-TRK Inhibitors
Classification: Transferase/Transferase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-03-06
Authors: Kreusch, A., Rucker, P., Molteni, V., Loren, J.
PDB entry 4ymk: Crystal Structure of Stearoyl-Coenzyme A Desaturase 1
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.605 Å
Deposited: 2015-03-06
Authors: Bai, Y., McCoy, J.G., Rajashankar, K.R., Zhou, M.
PDB entry 4yml: Crystal structure of Escherichia coli 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (3S,4R)-methylthio-DADMe-Immucillin-A
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2015-03-06
Authors: Cameron, S.A., Thomas, K., Almo, S.C., Schramm, V.L.
PDB entry 4ymm: Structure of human DNA polymerase beta complexed with 7BG as the template base in a 1-nucleotide gapped DNA
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.199 Å
Deposited: 2015-03-06
Authors: Lee, S., Koag, M.-C.
PDB entry 4ymn: Structure of human DNA polymerase beta complexed with N7BG in the template base paired with incoming non-hydrolyzable CTP
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.591 Å
Deposited: 2015-03-06
Authors: Lee, S., Koag, M.-C.
PDB entry 4ymo: Structure of human DNA polymerase beta complexed with N7BG in the template opposite to incoming non-hydrolyzable CTP WITH MANGANESE IN THE ACTIVE SITE
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.148 Å
Deposited: 2015-03-07
Authors: Lee, S., Koag, M.-C.
PDB entry 4ymp: Crystal structure of the Bacillus anthracis Hal NEAT domain in complex with heme
Classification: Heme-Binding Protein
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2015-03-07
Authors: Torres, R., Goulding, C.W.
PDB entry 4ymq: X-ray co-structure of nuclear receptor ROR-GAMMAT + SRC2 peptide with a benzothiadiazole dioxide inverse agonist
Classification: NUCLEAR HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-03-07
Authors: li, X.
PDB entry 4ymr: Crystal structure of the domain swapped PXB/TPR domain of mouse SNX21
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-03-07
Authors: Collins, B.C., Teasdale, R.D., Clairfeuille, T.
PDB entry 4yms: Crystal structure of an amino acid ABC transporter
Classification: PROTEIN BINDING/TRANSPORT PROTEIN
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-03-07
Authors: Ge, J., Yu, J., Yang, M.
PDB entry 4ymt: Crystal structure of an amino acid ABC transporter complex with arginines
Classification: PROTEIN BINDING/TRANSPORT PROTEIN
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.599 Å
Deposited: 2015-03-07
Authors: Ge, J., Yu, J., Yang, M.
PDB entry 4ymu: Crystal structure of an amino acid ABC transporter complex with arginines and ATPs
Classification: PROTEIN BINDING/TRANSPORT PROTEIN
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.503 Å
Deposited: 2015-03-07
Authors: Ge, J., Yu, J., Yang, M.
PDB entry 4ymv: Crystal structure of an amino acid ABC transporter with ATPs
Classification: PROTEIN BINDING/TRANSPORT PROTEIN
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Experimental method: X-RAY DIFFRACTION
Resolution: 3.003 Å
Deposited: 2015-03-07
Authors: Ge, J., Yu, J., Yang, M.
PDB entry 4ymw: Crystal structure of an amino acid ABC transporter with histidines
Classification: PROTEIN BINDING/TRANSPORT PROTEIN
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.804 Å
Deposited: 2015-03-07
Authors: Ge, J., Yu, J., Yang, M.
PDB entry 4ymx: Crystal structure of the substrate binding protein of an amino acid ABC transporter
Classification: TRANSPORT PROTEIN
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.481 Å
Deposited: 2015-03-07
Authors: Ge, J., Yu, J., Yang, M.
PDB entry 4ymy: Crystal structure of mutant nitrobindin M75A/H76L/Q96C/M148L/H158A (NB11) from Arabidopsis thaliana
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2015-03-08
Authors: Mizohata, E., Himiyama, T., Tachikawa, K., Oohora, K., Onoda, A., Hayashi, T.
PDB entry 4ymz: DHAP bound Leptospira Interrogans Triosephosphate Isomerase (LiTIM)
Classification: ISOMERASE
Source organism: Leptospira interrogans serovar Icterohaemorrhagiae str. RGA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2015-03-08
Authors: Pareek, V., Balaram, P., Murthy, M.R.N.
PDB entry 4yn0: Crystal structure of APP E2 domain in complex with DR6 CRD domain
Classification: Apoptosis/Cell Adhesion
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-03-08
Authors: Xu, K., Nikolov, D.
PDB entry 4yn1: THE ATOMIC STRUCTURE OF ANOMALA CUPREA ENTOMOPOXVIRUS (ACEPV) FUSOLIN SPINDLES
Classification: VIRAL PROTEIN
Source organism: Anomala cuprea entomopoxvirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-03-09
Authors: Chiu, E., Bunker, R.D., Metcalf, P.
PDB entry 4yn2: THE ATOMIC STRUCTURE OF WISEANA SPP ENTOMOPOXVIRUS (WSEPV) FUSOLIN SPINDLES
Classification: VIRAL PROTEIN
Source organism: unidentified entomopoxvirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2015-03-09
Authors: Chiu, E., Bunker, R.D., Metcalf, P.
PDB entry 4yn3: Crystal structure of Cucumisin complex with pro-peptide
Classification: HYDROLASE
Source organism: Cucumis melo
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2015-03-09
Authors: Murayama, K., Kato-Murayama, M., Yokoyama, S., Arima, K., Shirouzu, M.
PDB entry 4yn4: Structure of human DNA polymerase beta complexed with N7BG in the template opposite to incoming non-hydrolyzable dTTP WITH MANGANESE IN THE ACTIVE SITE
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.243 Å
Deposited: 2015-03-09
Authors: Lee, S., Koag, M.-C.
PDB entry 4yn5: Catalytic domain of Bacillus sp. JAMB-750 GH26 Endo-beta-1,4-mannanase
Classification: HYDROLASE
Source organism: Bacillus sp. JAMB750
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-03-09
Authors: Shimane, Y., Ohta, Y., Usami, R., Hatada, Y.
PDB entry 4yn6: Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs)
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2015-03-09
Authors: Tawani, A., Kumar, A.
PDB entry 4yn7: Non-oxidized YfiR
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-03-09
Authors: Yang, X., Jiang, T.
PDB entry 4yn8: Crystal Structure of Response Regulator ChrA in Heme-Sensing Two Component System
Classification: DNA BINDING PROTEIN
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-03-09
Authors: Doi, A., Nakamura, H., Shiro, Y., Sugimoto, H.
PDB entry 4yn9: YfiR mutant-C110S
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2015-03-09
Authors: Xu, M., Jiang, T.
PDB entry 4yna: Oxidized YfiR
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-03-09
Authors: Xu, M., Jiang, T.
PDB entry 4ynb: Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with pyrazinylthio-DADMe-Immucillin-A
Classification: Hydrolase/inhibitor
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-03-09
Authors: Cameron, S.A., Wang, S., Almo, S.C., Schramm, V.L.
PDB entry 4ync: OYE1 W116A COMPLEXED WITH (Z)-METHYL-3-CYANO-3-PHENYLACRYLATE IN A NON PRODUCTIVE BINDING MODE
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces pastorianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.498 Å
Deposited: 2015-03-09
Authors: Santangelo, S., Brenna, E., Stewart, J.D., Powell III, R.W.
PDB entry 4ynd: The Discovery of A-893, A New Cell-Active Benzoxazinone Inhibitor of Lysine Methyltransferase SMYD2
Classification: Transferase/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2015-03-09
Authors: Sweis, R.F., Wang, Z., Algire, M., Arrowsmith, C.H., Brown, P.J., Chiang, G.C., Guo, J., Jakob, C.G., Kennedy, S., Li, F., Soni, N.B., Vedadi, M., Pappano, W.N.
PDB entry 4yne: (R)-2-Phenylpyrrolidine Substitute Imidazopyridazines: a New Class of Potent and Selective Pan-TRK Inhibitors
Classification: Transferase/Transferase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.0229 Å
Deposited: 2015-03-09
Authors: Kreusch, A., Rucker, P., Molteni, V., Loren, J.
PDB entry 4yng: Twinned pyruvate kinase from E. coli in the T-state
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2015-03-10
Authors: Donovan, K.A., Dobson, R.C.J.
PDB entry 4ynh: Structure of the C. elegans SAS-5 Implico dimerization domain
Classification: STRUCTURAL PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2015-03-10
Authors: Rogala, K.B., Vakonakis, I., Hatzopoulos, G.N.
PDB entry 4yni: Iron free succinate bound rat cysteine dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.404 Å
Deposited: 2015-03-10
Authors: Fellner, M., Tchesnokov, E.P., Jameson, G.N.L., Wilbanks, S.M.
PDB entry 4ynk: Crystal structure of vitamin D receptor ligand binding domain complexed with a 19-norvitamin D compound
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-03-10
Authors: Watarai, Y., Ikura, T., Ito, N.
PDB entry 4ynl: Crystal structure of the hood domain of Anabaena HetR in complex with the hexapeptide ERGSGR derived from PatS
Classification: TRANSCRIPTION
Source organism: Nostoc sp. PCC 7120; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-03-10
Authors: Hu, H.X., Jiang, Y.L., Zhao, M.X., Zhang, C.C., Chen, Y., Zhou, C.Z.
PDB entry 4ynm: ASH1L wild-type SET domain in complex with S-adenosyl methionine (SAM)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2015-03-10
Authors: Rogawski, D.S., Ndoj, J., Cho, H.-J., Maillard, I., Grembecka, J., Cierpicki, T.
PDB entry 4ynn: Structure of Legionella pneumophila DegQ (S190A variant)
Classification: HYDROLASE
Source organism: Escherichia coli; Legionella pneumophila subsp. pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-03-10
Authors: Wrase, R., Hilgenfeld, R., Hansen, G.
PDB entry 4yno: Crystal structure of MAPK13 at INACTIVE FORM
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-03-10
Authors: Miller, C.A., Brett, T.J.
PDB entry 4ynp: ASH1L SET domain S2259M mutant in complex with S-adenosyl methionine (SAM)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-03-10
Authors: Rogawski, D.S., Ndoj, J., Cho, H.-J., Maillard, I., Grembecka, J., Cierpicki, T.
PDB entry 4ynq: TREX1-dsDNA complex
Classification: Hydrolase/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-03-10
Authors: Fye, J.M., Harvey, S., Perrino, F.W., Hollis, T.
PDB entry 4ynr: DosS GAFA Domain Reduced CO Bound Crystal Structure
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2015-03-10
Authors: Madrona, Y.
PDB entry 4ynt: Crystal structure of Aspergillus flavus FAD glucose dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Aspergillus flavus NRRL3357
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2015-03-11
Authors: Yoshida, H., Sakai, G., Kojima, K., Kamitori, S., Sode, K.
PDB entry 4ynu: Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone
Classification: OXIDOREDUCTASE
Source organism: Aspergillus flavus NRRL3357
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2015-03-11
Authors: Yoshida, H., Sakai, G., Kojima, K., Kamitori, S., Sode, K.
PDB entry 4ynv: Assembly Chaperone of RpL4 (Acl4) (Residues 28-338)
Classification: CHAPERONE
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2015-03-11
Authors: Huber, F.M., Hoelz, A.
PDB entry 4ynw: Assembly Chaperone of RpL4 (Acl4) (Residues 1-338)
Classification: CHAPERONE
Source organism: Chaetomium thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2015-03-11
Authors: Huber, F.M., Hoelz, A.
PDB entry 4ynx: Structure of YdiE from E. coli
Classification: UNKNOWN FUNCTION
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-03-11
Authors: Tame, J.R.H., Nishimura, K., Zhang, K.Y.J.
PDB entry 4yny: Crystal structure of monoclonal anti-human podoplanin antibody NZ-1
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.584 Å
Deposited: 2015-03-11
Authors: Fujii, Y., Kitago, Y., Arimori, T., Takagi, J.
PDB entry 4ynz: Structure of the N-terminal domain of SAD
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-03-11
Authors: Wu, J.X., Wang, J., Chen, L., Wang, Z.X., Wu, J.W.
PDB entry 4yo0: Crystal structure of monoclonal anti-human podoplanin antibody NZ-1 with bound PA peptide
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2015-03-11
Authors: Fujii, Y., Kitago, Y., Arimori, T., Takagi, J.
PDB entry 4yo1: Structure of Legionella pneumophila DegQ (delta PDZ2 variant)
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-03-11
Authors: Wrase, R., Hilgenfeld, R., Hansen, G.
PDB entry 4yo2: Structure of E2F8, an atypical member of E2F family of transcription factors
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.073 Å
Deposited: 2015-03-11
Authors: Morgunova, E., Yin, Y., Jolma, A., Dave, K., Schmierer, B., Popov, A., Eremina, N., Nilsson, L., Taipale, J.
PDB entry 4yo3: Enteroaggregative Escherichia Coli TssA N-terminal fragment
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli 042
Experimental method: X-RAY DIFFRACTION
Resolution: 3.37 Å
Deposited: 2015-03-11
Authors: Durand, E., Zoued, A., Spinelli, S., Douzi, B., Brunet, Y.R., Bebeacua, C., Legrand, P., Journet, L., Mignot, T., Cambillau, C., Cascales, E.
PDB entry 4yo4: Crystal Structure of DAPK1 catalytic domain in complex with the hinge binding fragment phthalazine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-03-11
Authors: Grum-Tokars, V.L., Roy, S.M., Minasov, G., Anderson, W.F., Watterson, D.M.
PDB entry 4yo5: EAEC T6SS TssA-Cterminus
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli 042
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2015-03-11
Authors: Durand, E., Zoued, A., Spinelli, S., Douzi, B., Brunet, Y.R., Bebeacua, C., Legrand, P., Journet, L., Mignot, T., Cambillau, C., Cascales, E.
PDB entry 4yo6: Irak4-inhibitor co-structure
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2015-03-11
Authors: Fischmann, T.O.
PDB entry 4yo7: Crystal Structure of an ABC transporter solute binding protein (IPR025997) from Bacillus halodurans C-125 (BH2323, TARGET EFI-511484) with bound myo-inositol
Classification: SOLUTE BINDING PROTEIN
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-03-11
Authors: Yadava, U., Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Koss, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
PDB entry 4yo8: Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)(hexyl)amino)methanol
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-03-11
Authors: Cameron, S.A., Wang, S., Almo, S.C., Schramm, V.L.
PDB entry 4yo9: HKU4 3CLpro unbound structure
Classification: HYDROLASE
Source organism: Bat coronavirus HKU4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-03-11
Authors: St John, S.E., Mesecar, A.
PDB entry 4yoa: Crsystal structure HIV-1 Protease MDR769 L33F Complexed with darunavir
Classification: Hydrolase/Hydrolase inhibitor
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.697 Å
Deposited: 2015-03-11
Authors: Kuiper, B.D., Keusch, B., Dewdney, T.G., Chordia, P., Brunzelle, J.S., Ross, K., Kovari, I.A., MacArthur, R., Salimnia, H., Kovari, L.C.
PDB entry 4yob: Crystal Structure of Apo HIV-1 Protease MDR769 L33F
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.504 Å
Deposited: 2015-03-11
Authors: Kuiper, B.D., Keusch, B., Dewdney, T.G., Chordia, P., Ross, K., Brunzelle, J.S., Kovari, I.A., MacArthur, R., Salimnia, H., Kovari, L.C.
PDB entry 4yoc: Crystal Structure of human DNMT1 and USP7/HAUSP complex
Classification: TRANSFERASE/HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.916 Å
Deposited: 2015-03-11
Authors: Cheng, J., Yang, H., Fang, J., Gong, R., Wang, P., Li, Z., Xu, Y.
PDB entry 4yod: Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae ATCC 43185 at 1.90 A resolution
Classification: OXIDOREDUCTASE
Source organism: Bacteroides caccae ATCC 43185
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-03-11
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4yoe: Structure of UP1 bound to RNA 5'-AGU-3'
Classification: RNA Binding Protein/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2015-03-11
Authors: Meagher, J.L., Stuckey, J.A.
PDB entry 4yof: DosS GAFA Domain Reduced Nitric Oxide Bound Crystal Structure
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-03-11
Authors: Madrona, Y.
PDB entry 4yog: HKU4-3CLpro bound to non-covalent inhibitor 3B
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Bat coronavirus HKU4
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-03-11
Authors: St John, S.E., Mesecar, A.
PDB entry 4yoi: Structure of HKU4 3CLpro bound to non-covalent inhibitor 1A
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Bat coronavirus HKU4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2015-03-11
Authors: St John, S.E., Mesecar, A.
PDB entry 4yoj: HKU4 3CLpro bound to non-covalent inhibitor 2A
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Bat coronavirus HKU4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-03-11
Authors: St John, S.E., Mesecar, A.
PDB entry 4yok: Crystal structure of a DUF3823 family protein (PARMER_04126) from Parabacteroides merdae ATCC 43184 at 1.80 A resolution
Classification: UNKNOWN FUNCTION
Source organism: Parabacteroides merdae ATCC 43184
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-03-11
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4yol: Human fibroblast growth factor-1 C16S/A66C/C117A/P134A
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2015-03-11
Authors: Xia, X., Blaber, M.
PDB entry 4yom: Structure of SAD kinase
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2015-03-12
Authors: Wu, J.X., Wang, J., Chen, L., Wang, Z.X., Wu, J.W.
PDB entry 4yon: P-Rex1:Rac1 complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2015-03-11
Authors: Lucato, C.M., Whisstock, J.C., Ellisdon, A.M.
PDB entry 4yoo: p107 pocket domain in complex with LIN52 P29A peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-03-12
Authors: Guiley, K.Z., Liban, T.J., Felthousen, J.G., Ramanan, P., Tripathi, S., Litovchick, L., Rubin, S.M.
PDB entry 4yop: CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-03-12
Authors: Sugahara, M., Nakane, T., Suzuki, M., Nango, E.
PDB entry 4yoq: Crystal Structure of MutY bound to its anti-substrate
Classification: Hydrolase/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2015-03-11
Authors: Wang, L., Lee, S., Verdine, G.L.
PDB entry 4yor: Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 1.52A resolution.
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2015-03-12
Authors: Miyazono, K., Tsutsumi, K., Tanokura, M.
PDB entry 4yos: p107 pocket domain complexed with LIN52 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Myotis davidii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-03-12
Authors: Guiley, K.Z., Liban, T.J., Felthousen, J.G., Ramanan, P., Tripathi, S., Litovchick, L., Rubin, S.M.
PDB entry 4yot: Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 2.15A resolution
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2015-03-12
Authors: Miyazono, K., Tsutsumi, K., Tanokura, M.
PDB entry 4you: Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 2.20A resolution.
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-03-12
Authors: Miyazono, K., Tsutsumi, K., Tanokura, M.
PDB entry 4yov: Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dA
Classification: HYDROLASE/DNA
Source organism: Pyrococcus horikoshii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-03-12
Authors: Miyazono, K., Ito, T., Tanokura, M.
PDB entry 4yow: Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dC
Classification: HYDROLASE/DNA
Source organism: Pyrococcus horikoshii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-03-12
Authors: Miyazono, K., Ito, T., Tanokura, M.
PDB entry 4yox: Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT
Classification: HYDROLASE/DNA
Source organism: Pyrococcus horikoshii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-03-12
Authors: Miyazono, K., Ito, T., Tanokura, M.
PDB entry 4yoy: Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT and Mg2+ ion
Classification: HYDROLASE/DNA
Source organism: Pyrococcus horikoshii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2015-03-12
Authors: Miyazono, K., Ito, T., Tanokura, M.
PDB entry 4yoz: p107 pocket domain in complex with HPV E7 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Human papillomavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.245 Å
Deposited: 2015-03-12
Authors: Liban, T.J., Guiley, K.Z., Felthousen, J.G., Ramanan, P., Litovchick, L., Rubin, S.M.