LiteFold/PDB huggingface dataset:
PDB entry 8opp: Structure of human terminal uridylyltransferase 7 (hTUT7/ZCCHC6) bound with pre-let7g miRNA and UTPalphaS
Classification: RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2023-04-07
Authors: Yi, G., Ye, M., Gilbert, R.J.
PDB entry 8opq: Structure of Human Solute Carrier 26 family member A6 (SLC26A6) anion transporter in an inward-facing state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-04-07
Authors: Tippett, D.N., Breen, C., Butler, S.J., Sawicka, M., Dutzler, R.
PDB entry 8opr: Structure of the EA1 surface layer of Bacillus anthracis
Classification: STRUCTURAL PROTEIN
Source organism: Bacillus anthracis; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.811 Å
Deposited: 2023-04-07
Authors: Sogues, A., Remaut, H.
PDB entry 8ops: Human terminal uridylyltransferase 7 (TUT7/ZCCHC6) bound with pre-let7g miRNA and Lin28A - complex 1
Classification: RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2023-04-08
Authors: Yi, G., Ye, M., Gilbert, R.J.
PDB entry 8opt: Human terminal uridylyltransferase 7 (TUT7/ZCCHC6) bound with pre-let7g miRNA and Lin28A - complex 2
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2023-04-08
Authors: Yi, G., Ye, M., Gilbert, R.J.
PDB entry 8opu: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Sulfamethoxazole (Fragment-B-E1)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2023-04-10
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8opv: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Resveratrol (Fragment-B-H11)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-04-10
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8opw: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Caffeine (Fragment-B-51)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2023-04-10
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8opx: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Trehalose (Fragment-B-TRE)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-04-10
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8opy: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-B-DNQ
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-04-10
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8opz: Crystal structure of a tailspike depolymerase (APK16_gp47) from Acinetobacter phage APK16
Classification: VIRAL PROTEIN
Source organism: Acinetobacter phage APK16
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-04-10
Authors: Matyuta, I.O., Boyko, K.M., Nikolaeva, A.Y., Shneider, M.M., Timoshina, O.Y., Miroshnikov, K.A., Popov, V.O.
PDB entry 8oq0: Crystal structure of tailspike depolymerase (APK09_gp48) from Acinetobacter phage APK09
Classification: VIRAL PROTEIN
Source organism: Acinetobacter phage APK09
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-04-10
Authors: Matyuta, I.O., Boyko, K.M., Nikolaeva, A.Y., Shneider, M.M., Timoshina, O.Y., Popova, A.V., Miroshnikov, K.A., Popov, V.O.
PDB entry 8oq1: Crystal structure of tailspike depolymerase (APK14_gp49) from Acinetobacter phage vB_AbaP_APK14
Classification: VIRAL PROTEIN
Source organism: Acinetobacter phage vB_AbaP_APK14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-04-10
Authors: Matyuta, I.O., Boyko, K.M., Nikolaeva, A.Y., Shneider, M.M., Timoshina, O.Y., Miroshnikov, K.A., Popov, V.O.
PDB entry 8oq2: Binding of NADP to a formate dehydrogenase from Starkeya novella.
Classification: STRUCTURAL PROTEIN
Source organism: Starkeya novella
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-04-10
Authors: Partipilo, M., Whittaker, J.J., Pontillo, N., Guskov, A., Slotboom, D.J.
PDB entry 8oq3: Structure of methylamine treated human complement C3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-04-11
Authors: Gadeberg, T.A.F., Andersen, G.R.
PDB entry 8oq4: AApoAII amyloid fibril Morphology II (ex vivo)
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-04-11
Authors: Andreotti, G., Schmidt, M., Faendrich, M.
PDB entry 8oq5: AApoAII amyloid fibril Morphology I (ex vivo)
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-04-11
Authors: Andreotti, G., Schmidt, M., Faendrich, M.
PDB entry 8oq6: CryoEM structure of human rho1 GABAA receptor apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-04-11
Authors: Chen, F., Victor, T., John, C., Rebecca, J.H., Lindahl, E.
PDB entry 8oq7: CryoEM structure of human rho1 GABAA receptor in complex with inhibitor TPMPA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-04-11
Authors: Chen, F., Victor, T., John, C., Rebecca, J.H., Lindahl, E.
PDB entry 8oq8: CryoEM structure of human rho1 GABAA receptor in complex with pore blocker picrotoxin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-04-11
Authors: Chen, F., Victor, T., John, C., Rebecca, J.H., Lindahl, E.
PDB entry 8oq9: Crystal structure of the titin domain Fn3-56
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-04-11
Authors: Rees, M., Gautel, M.
PDB entry 8oqa: CryoEM structure of human rho1 GABAA receptor in complex with GABA and picrotoxin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-04-11
Authors: Chen, F., Victor, T., John, C., Rebecca, J.H., Lindahl, E.
PDB entry 8oqc: Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (1 h soaking)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-04-12
Authors: Loreto, D., Merlino, A., Maity, B., Ueno, T.
PDB entry 8oqd: Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (1 h soaking)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-04-12
Authors: Loreto, D., Merlino, A., Maity, B., Ueno, T.
PDB entry 8oqe: Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (6 h soaking)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-04-12
Authors: Loreto, D., Merlino, A., Maity, B., Ueno, T.
PDB entry 8oqf: Cross-linked crystal of Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (low temperature data collection)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-04-12
Authors: Loreto, D., Merlino, A., Maity, B., Ueno, T.
PDB entry 8oqg: Cross-linked crystal of dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (high temperature data collection)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Loreto, D., Merlino, A., Maity, B., Ueno, T.
PDB entry 8oqh: Structure of the cytosolic domain of lysosome-associated TMEM55B
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-04-12
Authors: Waschbusch, D., Khan, A.R.
PDB entry 8oqi: Cryo-EM structure of the wild-type alpha-synuclein fibril.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-04-12
Authors: Pesch, V., Reithofer, S., Ma, L., Flores-Fernandez, J.M., Oezduezenciler, P., Busch, Y., Lien, Y., Rudtke, O., Frieg, B., Schroeder, G.F., Wille, H., Tamgueney, G.
PDB entry 8oqj: Peripheral subunit binding domain of the E. coli Dihydrolipoamide Acetyltransferase (E2) of the pyruvate dehydrogenase complex
Classification: PROTEIN BINDING
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-04-12
Authors: Meinhold, S., Zdanowicz, R., Glockshuber, R.
PDB entry 8oqk: Crystal structure of Tannerella forsythia sugar kinase K1058
Classification: TRANSFERASE
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-04-12
Authors: Gogler, K., Fink, P., Stasiak, A.C., Stehle, T., Zocher, G.
PDB entry 8oql: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-1
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqm: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-10
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqn: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-53
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqo: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-49
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqp: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-76
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqq: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-79
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqr: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-80
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqs: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-83
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqt: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-91
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqu: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-92
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqv: Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-109
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-04-12
Authors: Dalwani, S., Wierenga, R.K., Venkatesan, R.
PDB entry 8oqw: Crystal structure of Tannerella forsythia MurNAc kinase MurK
Classification: TRANSFERASE
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-04-12
Authors: Gogler, K., Fink, P., Stasiak, A.C., Stehle, T., Zocher, G.
PDB entry 8oqx: Crystal structure of Tannerella forsythia MurNAc kinase MurK with a phosphate analogue
Classification: TRANSFERASE
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-04-12
Authors: Gogler, K., Fink, P., Stasiak, A.C., Stehle, T., Zocher, G.
PDB entry 8oqy: Structure of apo form of human gamma-secretase PSEN1 APH-1B isoform reconstituted into lipid nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-12
Authors: Odorcic, I., Chavez Gutierrez, L., Efremov, R.G.
PDB entry 8oqz: Structure of human gamma-secretase PSEN1 APH-1B isoform reconstituted into lipid nanodisc in complex with Ab46
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-12
Authors: Odorcic, I., Chavez Gutierrez, L., Efremov, R.G.
PDB entry 8or0: CAND1-CUL1-RBX1-SKP1-SKP2-CKS1-CDK2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-04-12
Authors: Shaaban, M., Clapperton, J.A., Ding, S., Maeots, M.E., Enchev, R.I.
PDB entry 8or1: Co-crystal strucutre of PD-L1 with low molecular weight inhibitor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-04-12
Authors: Zhang, H., Zhou, S., Wu, C., Zhu, M., Yu, Q., Wang, X., Awadasseid, A., Plewka, J., Magiera-Mularz, K., Wu, Y., Zhang, W.
PDB entry 8or2: CAND1-CUL1-RBX1-DCNL1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-12
Authors: Shaaban, M., Clapperton, J.A., Ding, S., Maeots, M.E., Enchev, R.I.
PDB entry 8or3: CAND1-CUL1-RBX1-SKP1-SKP2-DCNL1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-04-13
Authors: Shaaban, M., Clapperton, J.A., Ding, S., Maeots, M.E., Enchev, R.I.
PDB entry 8or4: Partially dissociated CAND1-CUL1-RBX1-SKP1-SKP2-CKS1-CDK2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-04-13
Authors: Shaaban, M., Clapperton, J.A., Ding, S., Maeots, M.E., Enchev, R.I.
PDB entry 8or5: Solution NMR structure of Notch1 TMD
Classification: MEMBRANE PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-04-13
Authors: Guschtschin-Schmidt, N., Muhle-Goll, C.
PDB entry 8or6: Crystal structure of Drosophila melanogaster alpha-amylase
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-04-13
Authors: Aghajari, N., Haser, R.
PDB entry 8or7: Structure of a far-red induced allophycocyanin from Chroococcidiopsis thermalis sp. PCC 7203
Classification: PHOTOSYNTHESIS
Source organism: Chroococcidiopsis thermalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-04-13
Authors: Zhou, L.J., Hoeppner, A., Wang, Y.Q., Zhao, K.H.
PDB entry 8or8: Solution structure of the 8-17 DNAzyme in presence of Zn2+
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-04-13
Authors: Andralojc, W., Gdaniec, Z.
PDB entry 8or9: Human holo aromatic L-amino acid decarboxylase (AADC) native structure at physiological pH
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-04-13
Authors: Bisello, G., Perduca, M., Bertoldi, M.
PDB entry 8ora: Human holo aromatic L-amino acid decarboxylase (AADC) external aldimine with L-Dopa methylester
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-04-13
Authors: Bisello, G., Perduca, M., Bertoldi, M.
PDB entry 8orb: 24-meric catalytic domain of dihydrolipoamide acetyltransferase (E2) of the E. coli pyruvate dehydrogenase complex.
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-04-13
Authors: Zdanowicz, R., Meinhold, S., Glockshuber, R.
PDB entry 8orc: Mus Musculus Acetylcholinesterase in complex with AL237
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-04-13
Authors: Ekstrom, F.E., Linusson, A.
PDB entry 8ord: Cryo-EM map of zebrafish cardiac F-actin
Classification: CONTRACTILE PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-04-13
Authors: Bradshaw, M., Squire, J.M., Morris, E., Atkinson, G., Richardson, B., Lees, J., Paul, D.M.
PDB entry 8ore: Cryo-EM structure of SH-SY5Y seeded with filaments from Alzheimer's Disease
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-04-13
Authors: Lovestam, S., Scheres, S.H.W., Goedert, M.
PDB entry 8orf: Cryo-EM structure of SH-SY5Y seeded with filaments from corticobasal degeneration extracts
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-04-13
Authors: Lovestam, S., Scheres, S.H.W., Goedert, M.
PDB entry 8org: Cryo-EM structure of SH-SY5Y seeded with filaments from corticobasal degeneration extracts (Type II)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-04-13
Authors: Lovestam, S., Scheres, S.H.W., Goedert, M.
PDB entry 8orh: Knockout of GMC-oxidoreductase genes reveals that functional redundancy preserves mimivirus essential functions
Classification: STRUCTURAL PROTEIN
Source organism: Mimivirus reunion
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-04-14
Authors: Alempic, J.M., Bisio, H., Villalta, A., Santini, S., Lartigue, A., Schmitt, A., Bugnot, C., Notaro, A., Belmudes, L., Adrait, A., Poirot, O., Ptchelkine, D., De Castro, C., Coute, Y., Abergel, C.
PDB entry 8ori: Crystal structure of Rhizobium etli L-asparaginase ReAIV (orthorhombic)
Classification: HYDROLASE
Source organism: Rhizobium etli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-04-14
Authors: Loch, J.I., Worsztynowicz, P., Sliwiak, J., Imiolczyk, B., Grzechowiak, M., Gilski, M., Jaskolski, M.
PDB entry 8orj: Cryo-EM structure of human tRNA ligase RTCB in complex with human PYROXD1.
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-14
Authors: Loeff, L., Kroupova, A., Asanovic, I., Boneberg, F., Pfleiderer, M.M., Ferdigg, A., Ackle, F., Martinez, J., Jinek, M.
PDB entry 8ork: cyclic 2,3-diphosphoglycerate synthetase from the hyperthermophilic archaeon Methanothermus fervidus
Classification: LIGASE
Source organism: Methanothermus fervidus DSM 2088
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-04-14
Authors: De Rose, S.A., Isupov, M.
PDB entry 8orl: Crystal structure of the S23226G missense variant of titin domain Fn3-56
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-04-14
Authors: Rees, M., Gautel, M.
PDB entry 8orm: Cryo-EM structure of CAK-THZ1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2023-04-14
Authors: Cushing, V.I., Koh, A.F., Feng, J., Jurgaityte, K., Bahl, A.K., Ali, S., Kotecha, A., Greber, B.J.
PDB entry 8orn: Crystal structure of Xanthomonas campestris pv. campestris LolA-LolB complex
Classification: LIPID BINDING PROTEIN
Source organism: Xanthomonas campestris pv. campestris str. B100
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-04-14
Authors: Furlanetto, V., Divne, C.
PDB entry 8oro: CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- OXOQUINALDINE 2,4-DIOXYGENASE (HOD) S101A VARIANT COMPLEXED WITH 2-METHYL-QUINOLIN-4(1H)-ONE UNDER HYPEROXYC CONDITIONS
Classification: OXIDOREDUCTASE
Source organism: Paenarthrobacter nitroguajacolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-04-15
Authors: Bui, S., Steiner, R.A.
PDB entry 8orp: Crystal structure of Drosophila melanogaster alpha-amylase in complex with the inhibitor acarbose
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-04-16
Authors: Aghajari, N., Haser, R.
PDB entry 8orq: Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase open clamp conformation
Classification: TRANSCRIPTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-17
Authors: Tarau, D.M., Reichelt, R., Heiss, F.B., Pilsl, M., Hausner, W., Engel, C., Grohmann, D.
PDB entry 8orr: Outer membrane protein assembly factor BamB from Klebsiella pneumoniae
Classification: PROTEIN BINDING
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-04-17
Authors: Song, H., Bolla, J.R.
PDB entry 8ors: Knockout of GMC-oxidoreductase genes reveals that functional redundancy preserves mimivirus essential functions
Classification: STRUCTURAL PROTEIN
Source organism: Mimivirus reunion
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-04-17
Authors: Alempic, J.M., Bisio, H., Villalta, A., Santini, S., Lartigue, A., Schmitt, A., Bugnot, C., Notaro, A., Belmudes, L., Adrait, A., Poirot, O., Ptchelkine, D., De Castro, C., Coute, Y., Abergel, C.
PDB entry 8oru: cyclic 2,3-diphosphoglycerate synthetase from the hyperthermophilic archaeon Methanothermus fervidus bound to 2,3-diphosphoglycerate and ADP.
Classification: LIGASE
Source organism: Methanothermus fervidus DSM 2088
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-04-17
Authors: De Rose, S.A., Isupov, M.
PDB entry 8orv: Crystal structure of monkeypox virus poxin in complex with the STING agonist MD1203
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-04-17
Authors: Duchoslav, V., Klima, M., Boura, E.
PDB entry 8orw: Crystal structure of human STING in complex with the agonist MD1203
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-04-17
Authors: Klima, M., Boura, E.
PDB entry 8orx: Structure of the murine LYVE-1 (lymphatic vessel endothelial receptor-1) hyaluronan binding domain in an unliganded state
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-04-17
Authors: Ni, T., Banerji, S., Jackson, D.J., Gilbert, R.J.C.
PDB entry 8ory: Solution NMR structure of Notch1 L1740-1743 TMD
Classification: MEMBRANE PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-04-17
Authors: Guschtschin-Schmidt, N., Muhle-Goll, C.
PDB entry 8orz: Solution NMR structure of Notch1 G1740-1743 TMD
Classification: MEMBRANE PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-04-17
Authors: Guschtschin-Schmidt, N., Muhle-Goll, C.
PDB entry 8os0: Solution NMR structure of Notch3 WT TMD
Classification: MEMBRANE PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-04-17
Authors: Guschtschin-Schmidt, N., Muhle-Goll, C.
PDB entry 8os1: X-ray structure of the Peroxisomal Targeting Signal 1 (PTS1) of Trypanosoma Cruzi PEX5 in complex with the PTS1 peptide
Classification: TRANSPORT PROTEIN
Source organism: Trypanosoma cruzi; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-04-17
Authors: Napolitano, V., Blat, A., Popowicz, G.M., Dubin, G.
PDB entry 8os2: Structure of the human LYVE-1 (lymphatic vessel endothelial receptor-1) hyaluronan binding domain in an unliganded state
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-04-17
Authors: Ni, T., Banerji, S., Jackson, D.J., Gilbert, R.J.C.
PDB entry 8os3: Crystal structure of the titin domain Fn3-11
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-04-17
Authors: Nikoopour, R., Rees, M., Gautel, M.
PDB entry 8os5: Crystal structure of the Factor XII heavy chain reveals an interlocking dimer with a FnII to kringle domain interaction
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-04-18
Authors: Li, C., Saleem, M., Kaira, B.G., Brown, A., Wilson, C., Philippou, H., Emsley, J.
PDB entry 8os6: Structure of a GFRA1/GDNF LICAM complex
Classification: CELL ADHESION
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2023-04-18
Authors: Houghton, F.M., Adams, S.E., Briggs, D.C., McDonald, N.Q.
PDB entry 8os9: Structure of Homo sapiens 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (DNPH1)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-18
Authors: Devi, S., da Silva, R.G.
PDB entry 8osb: TWIST1-TCF4-ALX4 complex on specific DNA
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-04-18
Authors: Morgunova, E., Kim, S., Popov, A., Wysocka, J., Taipale, J.
PDB entry 8osc: Structure of Homo sapiens 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 (DNPH1) bound to deoxyuridine 5'- monophosphate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-04-18
Authors: Devi, S., da Silva, R.G.
PDB entry 8osd: Crystal structure of the titin domain Fn3-49
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-18
Authors: Nikoopour, R., Rees, M., Gautel, M.
PDB entry 8ose: C. perfringens chitinase CP4_3455 in complex with inhibitor bisdionin C
Classification: HYDROLASE
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-04-18
Authors: Bloch, Y., Savvides, S.N.
PDB entry 8osf: AAA+ motor subunit ChlI of magnesium chelatase, hexamer conformation A
Classification: PHOTOSYNTHESIS
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-04-18
Authors: Shvarev, D., Moeller, A.
PDB entry 8osg: AAA+ motor subunit ChlI of magnesium chelatase, hexamer conformation B
Classification: PHOTOSYNTHESIS
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-04-18
Authors: Shvarev, D., Moeller, A.
PDB entry 8osh: AAA+ motor subunit ChlI of magnesium chelatase, pentamer spring-washer-like conformation
Classification: PHOTOSYNTHESIS
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2023-04-18
Authors: Shvarev, D., Moeller, A.
PDB entry 8osi: Genetically encoded green ratiometric calcium indicator FNCaMP in calcium-bound state
Classification: FLUORESCENT PROTEIN
Source organism: Aspergillus niger; Branchiostoma lanceolatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2023-04-19
Authors: Varfolomeeva, L.A., Boyko, K.M., Nikolaeva, A.Y., Subach, O.M., Subach, F.V.
PDB entry 8osj: Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)
Classification: GENE REGULATION
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å
Deposited: 2023-04-19
Authors: Michael, A.K., Stoos, L., Kempf, G., Cavadini, S., Thoma, N.H.
PDB entry 8osk: Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)
Classification: GENE REGULATION
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-04-19
Authors: Stoos, L., Michael, A.K., Kempf, G., Cavadini, S., Thoma, N.H.
PDB entry 8osl: Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)
Classification: GENE REGULATION
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2023-04-19
Authors: Michael, A.K., Stoos, L., Kempf, G., Cavadini, S., Thoma, N.
PDB entry 8osm: GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESSURE
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-04-19
Authors: Colloc'h, N., Girard, E., Prange, T., Kalbitzer, H.R.
PDB entry 8osn: GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT AMBIENT PRESSURE
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-04-19
Authors: Colloc'h, N., Prange, T., Girard, E., Kalbitzer, H.R.
PDB entry 8oso: GTPase HRAS in complex with Zn-cyclen under 500 MPa pressure
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-04-19
Authors: Colloc'h, N., Prange, T., Girard, E., Kalbitzer, H.R.
PDB entry 8osp: GCN5-related N-Acetyltransferase from Lactobacillus curiae
Classification: TRANSFERASE
Source organism: Lactobacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-04-19
Authors: Fleming, J.R., Mayans, O.
PDB entry 8osq: Why does the herpes simplex 1 virus-encoded UL49.5 protein fail to inhibit the TAP-dependent antigen presentation?
Classification: VIRAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-04-19
Authors: Zhukov, I., Krupa, P., Karska, N., Rodziewicz-Motowidlo, S., Lipinska, A.D.
PDB entry 8ost: Structure of human terminal uridylyltransferase 4 (TUT4, ZCCHC11) in complex with pre-let7g miRNA and Lin28A
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2023-04-20
Authors: Gilbert, R.J., Yi, G., Ye, M.
PDB entry 8osv: Structural and functional studies of geldanamycin amide synthase ShGdmF
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces hygroscopicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-04-20
Authors: Ewert, W., Zeilinger, C., Kirschning, A., Preller, M.
PDB entry 8osw: Crystal structure of Rhizobium etli L-asparaginase ReAIV (R4mC-1)
Classification: HYDROLASE
Source organism: Rhizobium etli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-04-20
Authors: Loch, J.I., Worsztynowicz, P., Sliwiak, J., Imiolczyk, B., Grzechowiak, M., Gilski, M., Jaskolski, M.
PDB entry 8osx: SARS-CoV-2 nsp10-16 methyltransferase in complex with ATP
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-04-20
Authors: Kremling, V., Sprenger, J., Oberthuer, D.
PDB entry 8osy: Trimeric catalytic domain of the E. coli Dihydrolipoamide Acetyltransferase (E2) of the pyruvate dehydrogenase complex
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-04-20
Authors: Meinhold, S., Zdanowicz, R., Glockshuber, R.
PDB entry 8osz: Structural and functional studies of geldanamycin amide synthase ShGdmF
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces hygroscopicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2023-04-20
Authors: Ewert, W., Zeilinger, C., Kirschning, A., Preller, M.
PDB entry 8ot0: SARS-CoV-2 nsp10-16 methyltransferase in complex with MTA and glycine
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-04-20
Authors: Kremling, V., Sprenger, J., Oberthuer, D., Falke, S.
PDB entry 8ot1: unseeded Abeta(1-40) amyloid fibril (morphology i)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-04-20
Authors: Pfeiffer, P.B., Schmidt, M., Faendrich, M.
PDB entry 8ot2: Structural and functional studies of geldanamycin amide synthase ShGdmF
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces hygroscopicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-04-20
Authors: Ewert, W., Zeilinger, C., Kirschning, A., Preller, M.
PDB entry 8ot3: unseeded Abeta(1-40) amyloid fibril (morphology ii)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-04-20
Authors: Pfeiffer, P.B., Schmidt, M., Faendrich, M.
PDB entry 8ot4: seeded Abeta(1-40) amyloid fibril (morphology I)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-04-20
Authors: Pfeiffer, P.B., Schmidt, M., Faendrich, M.
PDB entry 8ot5: Crystal structure of the titin domain Fn3-85
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-04-20
Authors: Nikoopour, R., Rees, M., Gautel, M.
PDB entry 8ot6: CTE typeI tau filament from Guam ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8ot7: Crystal structure of an 8-repeat consensus TPR superhelix with Barium
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-04-20
Authors: Liutkus, M., Rojas, A.L., Cortajarena, A.L.
PDB entry 8ot8: Alditol oxidase from Actinomycetota bacterium in complex with D-xylulose
Classification: FLAVOPROTEIN
Source organism: Actinomycetota bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-04-20
Authors: Rotilio, L., Mattevi, A.
PDB entry 8ot9: CTE typeIII tau filament from Guam ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8ota: High resolution crystal structure of a Leaf-branch compost cutinase quadruple variant
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-04-20
Authors: Gavalda, S., Cioci, G., Marty, A., Duquesne, S.
PDB entry 8otb: Clostridium perfringens chitinase CP4_3455
Classification: HYDROLASE
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-04-20
Authors: Bloch, Y., Savvides, S.N.
PDB entry 8otc: CTE typeII tau filament from Guam ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8otd: TMEM106B Fold1-s filament from Guam ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8ote: TMEM106B Fold I-d filament from Guam ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8otf: Ab typeII filament from Guam ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8otg: CTE typeI tau filament from Kii ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8oth: TypeII tau filament from Kii ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8oti: CTE typeIII tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-04-20
Authors: Tetter, S., Qi, C., Ryskeldi-Falcon, B., Scheres, S.H.W., Goedert, M.
PDB entry 8otj: PHF tau filament from Kii ALS/PDC
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-20
Authors: Qi, C., Yang, S., Scheres, S.H.W., Goedert, M.
PDB entry 8otk: Structure of ClpC Q11P N-terminal Domain
Classification: CHAPERONE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-04-21
Authors: Evans, N.J., Isaacson, R.L., Camp, A.H.
PDB entry 8otl: structure of InhA from Mycobacterium tuberculosis in complex with 5-(((4-(2-hydroxyphenoxy)benzyl)(octyl)amino)methyl)-2-phenoxyphenol
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.108 Å
Deposited: 2023-04-21
Authors: Tamhaev, R., Maveyraud, L., Chebaiki, M., Lherbet, C., Mourey, L.
PDB entry 8otm: structure of InhA from mycobacterium tuberculosis in complex with N-((1-(3-hydroxy-4-phenoxybenzyl)-1H-1,2,3-triazol-4-yl)methyl)-2-oxo-2H-chromene-3-carboxamide
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-21
Authors: Chebaiki, M., Maveyraud, L., Tamhaev, R., Lherbet, C., Mourey, L.
PDB entry 8otn: structure of InhA from mycobacterium tuberculosis in complex with inhibitor 7-((1-(3-Hydroxy-4-phenoxybenzyl)-1H-1,2,3-triazol-4-yl)methoxy)-4-methyl-2H-chromen-2-one
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.962 Å
Deposited: 2023-04-21
Authors: Chebaiki, M., Maveyraud, L., Tamhaev, R., Lherbet, C., Mourey, L.
PDB entry 8oto: SARS-CoV-2 nsp10-16 methyltransferase in complex with AMP
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-04-21
Authors: Kremling, V., Sprenger, J., Oberthuer, D.
PDB entry 8otp: Crystal structure of human carbonic anhydrase II with 1-cyclopropyl-6-fluoro-4-oxo-7-(4-(4-sulfamoylbenzoyl)piperazin-1-yl)-1,4-dihydroquinoline-3-carboxylic acid
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-04-21
Authors: Angeli, A., Ferraroni, M.
PDB entry 8otq: Cryo-EM structure of Strongylocentrotus purpuratus sperm-specific Na+/H+ exchanger SLC9C1 in GDN
Classification: TRANSPORT PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-04-21
Authors: Yeo, H., Mehta, V., Gulati, A., Drew, D.
PDB entry 8otr: SARS-CoV-2 nsp10-16 methyltransferase in complex with SAM analog BDH 33959089
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-04-21
Authors: Kremling, V., Sprenger, J., Oberthuer, D.
PDB entry 8ots: OCT4 and MYC-MAX co-bound to a nucleosome
Classification: TRANSCRIPTION
Source organism: Aequorea victoria; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-21
Authors: Michael, A.K., Stoos, L., Kempf, G., Cavadini, S., Thoma, N.
PDB entry 8ott: MYC-MAX bound to a nucleosome at SHL+5.8
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-21
Authors: Stoos, L., Michael, A.K., Kempf, G., Kater, L., Cavadini, S., Thoma, N.
PDB entry 8otu: The crystal structure of PET44, a PETase enzyme from Alkalilimnicola ehrlichii
Classification: HYDROLASE
Source organism: Alkalilimnicola ehrlichii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-04-21
Authors: Costanzi, E., Applegate, V., Smits, S.H.J.
PDB entry 8otv: Crystal structure of NUDT14 complexed with novel compound
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-04-21
Authors: Balikci, E., Feyerherm, C., Bradshaw, W., Seupel, R., Brennan, P.E., Bountra, C., von Delft, F., Huber, K., Structural Genomics Consortium (SGC)
PDB entry 8otw: Cryo-EM structure of Strongylocentrotus purpuratus SLC9C1 in presence of cAMP
Classification: TRANSPORT PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-04-21
Authors: Yeo, H., Mehta, V., Gulati, A., Drew, D.
PDB entry 8otx: Cryo-EM structure of Strongylocentrotus purpuratus sperm-specific Na+/H+ exchanger SLC9C1 in nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-04-21
Authors: Yeo, H., Mehta, V., Gulati, A., Drew, D.
PDB entry 8oty: Crystal structure of the titin domain Fn3-90
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-04-21
Authors: Nikoopour, R., Rees, M., Gautel, M.
PDB entry 8otz: 48-nm repeat of the native axonemal doublet microtubule from bovine sperm
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-04-21
Authors: Leung, M.R., Zeng, J., Zhang, R., Zeev-Ben-Mordehai, T.
PDB entry 8ou0: bovine sperm endpiece singlet microtubules (one tubulin dimer and associated microtubule inner proteins)
Classification: CYTOSOLIC PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-04-21
Authors: Leung, M.R., Zeev-Ben-Mordehai, T.
PDB entry 8ou1: Crystal structure of the SPOC domain of mouse SPOCD1
Classification: GENE REGULATION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-21
Authors: Heep, M., Cook, A.G., O'Carroll, D.
PDB entry 8ou2: Crystal structure of the bromodomain of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to a potent inhibitor
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-21
Authors: Balikci, E., Ni, X., Bountra, C., von Delft, F., Huber, K.
PDB entry 8ou3: Cereblon isoform 4 in complex with novel Benzamide-Type Cereblon Binder 8d
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-04-21
Authors: Heim, C., Bischof, L., Maiwald, S., Hartmann, M.D.
PDB entry 8ou4: Cereblon isoform 4 in complex with novel Benzamide-Type Cereblon Binder 11a
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-04-21
Authors: Heim, C., Bischof, L., Hartmann, M.D.
PDB entry 8ou5: Cereblon isoform 4 in complex with novel Benzamide-Type Cereblon Binder 11b
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-21
Authors: Heim, C., Bischof, L., Hartmann, M.D.
PDB entry 8ou6: Cereblon isoform 4 in complex with novel Benzamide-Type Cereblon Binder 11c
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense MSR-1 v2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-04-21
Authors: Heim, C., Bischof, L., Hartmann, M.D.
PDB entry 8ou7: Cereblon isoform 4 in complex with novel Benzamide-Type Cereblon Binder 11d
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-22
Authors: Heim, C., Bischof, L., Hartmann, M.D.
PDB entry 8ou8: Crystal structure of E. coli threonyl tRNA synthetase in complex with a TM84 analogue
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli IAI1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-04-22
Authors: Rodriguez Buitrago, J.A., Parisini, E., Aigars, J.
PDB entry 8ou9: Cereblon isoform 4 in complex with novel Benzamide-Type Cereblon Binder 11e
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-04-22
Authors: Heim, C., Bischof, L., Hartmann, M.D.
PDB entry 8oua: Cereblon isoform 4 in complex with novel Benzamide-Type Cereblon Binder 11f
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-04-22
Authors: Heim, C., Bischof, L., Hartmann, M.D.
PDB entry 8oub: The crystal structure of human carbonic anhydrase II with 1-cyclopropyl-6-fluoro-4-oxo-7-(4-((4-sulfamoylbenzyl)carbamoyl)piperazin-1-yl)-1,4-dihydroquinoline-3-carboxylic acid
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.178 Å
Deposited: 2023-04-22
Authors: Angeli, A., Ferraroni, M.
PDB entry 8ouc: Escherichia coli DPS
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-04-22
Authors: Kovalenko, V.V., Loiko, N.G., Tereshkina, K.B., Tereshkin, E.V., Chulichkov, A.L., Popov, A.N., Krupyanskii, Y.F.
PDB entry 8oud: Structure of the human neutral amino acid transporter ASCT2 in complex with nanobody 469
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2023-04-22
Authors: Canul-Tec, J., Reyes, N.