LiteFold/PDB huggingface dataset:
PDB entry 8z0n: Structure and dynamics of Drk-SH2 domain and its site-specific interaction with Sev
Classification: PEPTIDE BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: SOLUTION NMR
Deposited: 2024-04-10
Authors: Sayeesh, P.M., Mayumi, I., Inomata, K., IKeya, T., Ito, Y.
PDB entry 8z0o: Cryo-EM structure of chitin synthase
Classification: TRANSFERASE
Source organism: Phytophthora sojae strain P6497
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-04-10
Authors: Zhang, X., Niu, S., Li, P., Bi, Y.
PDB entry 8z0p: Cryo-EM structure of human ELAC2
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-10
Authors: Liu, Z.M., Xue, C.Y.
PDB entry 8z0q: Cryo-EM structure of dimer HtmB2-CT
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-04-10
Authors: Sun, Y.H., Zhang, Z.Y., Mei, Q.
PDB entry 8z0r: Cryo-EM structure of tetramer HtmB2-CT
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-04-10
Authors: Sun, Y.H., Zhang, Z.Y., Mei, Q.
PDB entry 8z0s: Cryo-EM structure of trimer HtmB2-CT
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-04-10
Authors: Sun, Y.H., Zhang, Z.Y., Mei, Q.
PDB entry 8z0t: Structure of the human ige-fc bound to its high affinity receptor fc(epsilon)
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-04-10
Authors: Du, S., Deng, M.J., Xiao, J.Y.
PDB entry 8z0u: Human beta-catenin crystal structure
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-04-10
Authors: Tim, F.
PDB entry 8z0x: Crystal structure of glyoxylate reductase from Acetobacter aceti in the apo form
Classification: OXIDOREDUCTASE
Source organism: Acetobacter aceti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-04-10
Authors: Majumder, T.R., Yoshizawa, T., Inoue, M., Aono, R., Matsumura, H., Mihara, H.
PDB entry 8z0z: Cryo-EM structure of the panda P2X7 receptor in complex with JNJ-54175446
Classification: TRANSPORT PROTEIN
Source organism: Ailuropoda melanoleuca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-04-10
Authors: Sheng, D., Hattori, M.
PDB entry 8z10: Human beta-catenin crystal structure
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-04-10
Authors: Tim, F.
PDB entry 8z11: Cryo-EM structure of haptophyte photosystem I
Classification: PHOTOSYNTHESIS
Source organism: Isochrysis galbana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-04-10
Authors: He, F.Y., Zhao, L.S., Li, K., Zhang, Y.Z., Liu, L.N.
PDB entry 8z12: Crystal structure of WT DiatB
Classification: OXIDOREDUCTASE
Source organism: Streptomyces ardesiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.238 Å
Deposited: 2024-04-10
Authors: Peng, M., Wu, Q.L.
PDB entry 8z13: Crystal structure of DiatB-NADPH complex
Classification: OXIDOREDUCTASE
Source organism: Streptomyces ardesiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.505 Å
Deposited: 2024-04-10
Authors: Peng, M., Wu, Q.L.
PDB entry 8z14: The crystal structure of DiatB-6-DMAT complex
Classification: OXIDOREDUCTASE
Source organism: Streptomyces ardesiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.638 Å
Deposited: 2024-04-10
Authors: Peng, M., Wu, Q.L.
PDB entry 8z15: Crystal structure of DiatB-NADP-6-DMAIAOx complex
Classification: OXIDOREDUCTASE
Source organism: Streptomyces ardesiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.552 Å
Deposited: 2024-04-10
Authors: Peng, M., Wu, Q.L.
PDB entry 8z16: Crystal structure of DiatB mutant N57A
Classification: OXIDOREDUCTASE
Source organism: Streptomyces ardesiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.419 Å
Deposited: 2024-04-10
Authors: Peng, M., Wu, Q.L.
PDB entry 8z17: Crystal structure of DiatB mutant R360A
Classification: OXIDOREDUCTASE
Source organism: Streptomyces ardesiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-04-10
Authors: Peng, M., Wu, Q.L.
PDB entry 8z18: The tetramer complex of DSR2 and tube-forming domain of phage tail tube protein
Classification: IMMUNE SYSTEM
Source organism: Bacillus phage SPR; Bacillus subtilis subsp. natto (strain BEST195)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2024-04-10
Authors: Zheng, J., Yang, X.
PDB entry 8z1c: Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the closed conformation (form 1)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-04-11
Authors: Godsora, B.K.J., Das, P., Bhaumik, P.
PDB entry 8z1d: Cryo-EM structure of the panda P2X7 receptor in complex with PSFL1191
Classification: TRANSPORT PROTEIN
Source organism: Ailuropoda melanoleuca
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-04-11
Authors: Sheng, D., Hattori, M.
PDB entry 8z1e: A homotrimeric GPCR architecture of the human cytomegalovirus (UL78) revealed by cryo-EM
Classification: ANTIVIRAL PROTEIN
Source organism: Human cytomegalovirus (strain AD169)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-04-11
Authors: Chen, Y., Li, Y., Zhou, Q., Cong, Z., Lin, S., Yan, J., Chen, X., Yang, D., Ying, T., Wang, M.-W.
PDB entry 8z1f: Cryo-EM structure of human ELAC2-tRNA
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-04-11
Authors: Liu, Z.M., Xue, C.Y.
PDB entry 8z1g: Cryo-EM structure of human ELAC2-pre-tRNA
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-04-11
Authors: Liu, Z.M., Xue, C.Y.
PDB entry 8z1h: Crystal structure of SARS main protease in complex with PF-00835231
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-04-11
Authors: Lin, C., Zhang, J., Li, J.
PDB entry 8z1i: Crystal structure of the isomerase Art22 with ethylene glycol
Classification: ISOMERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-04-11
Authors: Guo, L., Li, P.W., Li, D.F., Chen, Y.H.
PDB entry 8z1j: SFX structure of dark adapted CraCRY
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii CC3269
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-04-11
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z1l: Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant atomoxetine in an outward-open state at resolution of 3.4 angstrom.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-11
Authors: Tan, J., Xiao, Y., Kong, F., Lei, J., Yuan, Y., Yan, C.
PDB entry 8z1m: Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the partially closed conformation (form 2)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-04-11
Authors: Godsora, B.K.J., Das, P., Bhaumik, P.
PDB entry 8z1n: Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the closed conformation (form 2)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-04-11
Authors: Godsora, B.K.J., Das, P., Bhaumik, P.
PDB entry 8z1o: Cryo-EM structure of apo Aspergillus niger glutamate dehydrogenase (AnGDH) in the closed conformation
Classification: OXIDOREDUCTASE
Source organism: Aspergillus niger
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-04-11
Authors: Godsora, B.K.J., Das, P., Bhaumik, P.
PDB entry 8z1p: Crystal structure of Saccharomyces cerevisiae isoleucyl-tRNA synthetase in complex with a mimic tRNA(Met) and isoleucine
Classification: LIGASE/RNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2024-04-11
Authors: Chen, B., Yi, F., Zhou, H.
PDB entry 8z1r: isocitrate lyase MoMcl1
Classification: LYASE
Source organism: Pyricularia oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-04-11
Authors: Liu, X.H., Zhao, W.H.
PDB entry 8z1s: Crystal structure of mouse Galectin-3 in complex with small molecule inhibitor
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-11
Authors: Amit, K., Swetha, R., Ghosh, K.
PDB entry 8z1t: Crystal structure of mouse Galectin-3 in complex with small molecule inhibitor
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-12
Authors: Amit, K., Swetha, R., Ghosh, K.
PDB entry 8z1u: Crystal structure of aminoglycoside efflux transporter MexY from Pseudomonas aeruginosa
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2024-04-12
Authors: Murakami, S., Yamashita, E., Okada, U., Aoki, M.
PDB entry 8z1v: Cryo-EM structure of Escherichia coli DppBCDF in the resting state
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-04-12
Authors: Li, P., Huang, Y.
PDB entry 8z1w: Cryo-EM structure of Escherichia coli DppBCDF complex bound to ATPgammaS
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-12
Authors: Li, P., Huang, Y.
PDB entry 8z1x: Cryo-EM structure of Escherichia coli DppBCDF complex bound to AMPPNP
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-04-12
Authors: Li, P., Huang, Y.
PDB entry 8z1y: Cryo-EM structure of Escherichia coli DppABCDF in the pre-catalytic state
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-04-12
Authors: Li, P., Huang, Y.
PDB entry 8z1z: Cryo-EM structure of Escherichia coli DppAR383D+D436RBCDF in pre-catalytic state
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-04-12
Authors: Li, P., Huang, Y.
PDB entry 8z20: Crystal structure analysis of thermotolerant Oscillatoria Phycocyanin
Classification: PHOTOSYNTHESIS
Source organism: Oscillatoria sp. N9DM
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-12
Authors: Patel, S.N., Sonani, R.R., Gupta, G.D., Upadhyaya, C.T., Sonavane, B.P., Singh, N.K., Kumar, V., Madamwar, D.
PDB entry 8z21: Cryo-EM structure of Escherichia coli OppBCDF in the resting state
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-04-12
Authors: Li, P., Huang, Y.
PDB entry 8z22: Crystal structure of the liprin-alpha2/RIM1 complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-04-12
Authors: Jin, G., Wei, Z.
PDB entry 8z24: SFX structure of CraCRY 10 ns after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-12
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z25: Crystal structure of mouse Galectin-3 in complex with small molecule inhibitor
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-04-12
Authors: Amit, K., Swetha, R., Ghosh, K.
PDB entry 8z26: SFX structure of CraCRY 30 ns after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-12
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z27: The structure of TGEV RBD and dog APN complex
Classification: ISOMERASE
Source organism: Canis lupus familiaris; TGEV virulent Purdue
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-04-12
Authors: Sun, J.Q., Niu, S.
PDB entry 8z28: FK506-binding protein 1B
Classification: PROTEIN BINDING
Source organism: Pyricularia oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-04-12
Authors: Liu, X.H., Zhao, W.H.
PDB entry 8z29: Crystal structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) deletion mutant (T262-A263)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-04-12
Authors: Godsora, B.K.J., Bhaumik, P.
PDB entry 8z2a: Crystal structure of Aspergillus terreus glutamate dehydrogenase (AtGDH) with sequential mutations
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-04-12
Authors: Godsora, B.K.J., Bhaumik, P.
PDB entry 8z2b: Crystal structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the partially closed conformation (form II)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-04-12
Authors: Godsora, B.K.J., Bhaumik, P.
PDB entry 8z2c: Crystal structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) with open and partially closed conformations (form I)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-04-12
Authors: Godsora, B.K.J., Bhaumik, P.
PDB entry 8z2d: SFX structure of CraCRY 100 ns after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-12
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z2e: Crystal structure of nanobody Tnb04-1 with antibody 1F11 fab and SARS-CoV-2 RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-04-12
Authors: Wang, X.Q., Zhang, L.Q., Chen, J., Dong, H.D.
PDB entry 8z2f: Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the partially closed conformation (form 1)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-04-12
Authors: Godsora, B.K.J., Das, P., Bhaumik, P.
PDB entry 8z2g: MHET bound form of PET-degrading cutinase mutant Cut190*SS_S176A
Classification: HYDROLASE
Source organism: Saccharomonospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-12
Authors: Numoto, N., Kondo, F., Bekker, G.J., Liao, Z., Yamashita, M., Iida, A., Ito, N., Kamiya, N., Oda, M.
PDB entry 8z2h: Substrate analog a010 bound form of PET-degrading cutinase mutant Cut190**SS_S176A
Classification: HYDROLASE
Source organism: Saccharomonospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-12
Authors: Numoto, N., Kondo, F., Bekker, G.J., Liao, Z., Yamashita, M., Iida, A., Ito, N., Kamiya, N., Oda, M.
PDB entry 8z2i: Substrate analog a011 bound form of PET-degrading cutinase mutant Cut190**SS_S176A
Classification: HYDROLASE
Source organism: Saccharomonospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2024-04-12
Authors: Numoto, N., Kondo, F., Bekker, G.J., Liao, Z., Yamashita, M., Iida, A., Ito, N., Kamiya, N., Oda, M.
PDB entry 8z2j: Substrate analog a012 bound form of PET-degrading cutinase mutant Cut190**SS_S176A
Classification: HYDROLASE
Source organism: Saccharomonospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-04-12
Authors: Numoto, N., Kondo, F., Bekker, G.J., Liao, Z., Yamashita, M., Iida, A., Ito, N., Kamiya, N., Oda, M.
PDB entry 8z2k: Substrate analog a013 bound form of PET-degrading cutinase mutant Cut190**SS_S176A
Classification: HYDROLASE
Source organism: Saccharomonospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-12
Authors: Numoto, N., Kondo, F., Bekker, G.J., Liao, Z., Yamashita, M., Iida, A., Ito, N., Kamiya, N., Oda, M.
PDB entry 8z2l: Crystal structure of trehalose synthase mutant N253E from Deinococcus radiodurans
Classification: ISOMERASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2024-04-12
Authors: Ye, L.C., Chen, S.C.
PDB entry 8z2m: Crystal structure of 5-phosphomethyl-2'-deoxyuridine (5-PmdU) glycinyltransferase gp46/PUGT from Pseudomonads phage PaMx11
Classification: TRANSFERASE
Source organism: Pseudomonas phage PaMx11
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-13
Authors: Wen, Y., Guo, W.T., Wu, B.X.
PDB entry 8z2n: Crystal structure of 5-phosphomethyl-2'-deoxyuridine (5-PmdU) glycinyltransferase gp46/PUGT from Pseudomonads phage PaMx11 in complex with dsDNA
Classification: TRANSFERASE/DNA
Source organism: Pseudomonas phage PaMx11; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-04-13
Authors: Wen, Y., Guo, W.T., Wu, B.X.
PDB entry 8z2o: Crystal structure of 5-N-alpha-glycinylthymidine (N-alpha-GlyT) FAD-dependent lyase gp47/NGTO from Pseudomonads phage PaMx11
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas phage PaMx11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-04-13
Authors: Wen, Y., Guo, W.T., Wu, B.X.
PDB entry 8z2q: Crystal structure of trehalose synthase mutant N253Q from Deinococcus radiodurans
Classification: ISOMERASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2024-04-13
Authors: Ye, L.C., Chen, S.C.
PDB entry 8z2r: Crystal structure of trehalose synthase mutant N253T from Deinococcus radiodurans
Classification: ISOMERASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2024-04-13
Authors: Ye, L.C., Chen, S.C.
PDB entry 8z2s: Crystal structure of trehalose synthase mutant R148A from Deinococcus radiodurans
Classification: ISOMERASE
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-04-13
Authors: Ye, L.C., Chen, S.C.
PDB entry 8z2t: Crystal structure of trehalose synthase from Deinococcus radiodurans complexed with validoxylamine A (VAA)
Classification: ISOMERASE
Source organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2024-04-13
Authors: Ye, L.C., Chen, S.C.
PDB entry 8z2u: Crystal structure of trehalose synthase mutamt E324D from Deinococcus radiodurans complexed with validoxylamine A (VAA)
Classification: ISOMERASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-04-13
Authors: Ye, L.C., Chen, S.C.
PDB entry 8z2v: Crystal structure of Sonic hedgehog in complex with antibody 5E1 mutant H-R102A with metals
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-04-13
Authors: Caaveiro, J.M.M., Kaneda, I., Tsumoto, K.
PDB entry 8z2w: Crystal structure of apo- exo-beta-(1,3)-glucanase from Aspergillus oryzae (AoBgl)
Classification: HYDROLASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-04-13
Authors: Banerjee, B., Kamale, C.K., Suryawanshi, A.B., Bhaumik, P.
PDB entry 8z2x: Crystal structure of exo-beta-(1,3)-glucanase from Aspergillus oryzae (AoBgl) as a complex with cellobiose
Classification: HYDROLASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-04-13
Authors: Banerjee, B., Kamale, C.K., Suryawanshi, A.B., Bhaumik, P.
PDB entry 8z2y: High-resolution crystal structure of exo-beta-(1,3)-glucanase from Aspergillus oryzae (AoBgl) as a complex with glucose
Classification: HYDROLASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-04-13
Authors: Banerjee, B., Kamale, C.K., Suryawanshi, A.B., Bhaumik, P.
PDB entry 8z2z: PRMT1-Tetramer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-04-14
Authors: EswarKumar, N., Wang, C.H., Ho, M.C.
PDB entry 8z30: Crystal structure of HOIP PUB domain in complex with tolfenamic acid complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-04-14
Authors: Zhong, F., Ruan, K.
PDB entry 8z31: Crystal Structure of HIF-PHD2 in complex with compound 1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2024-04-14
Authors: Ito, S., Baba, D., Fukuda, T., Tanaka, N.
PDB entry 8z32: Crystal Structure of HIF-PHD2 in complex with compound 3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-14
Authors: Ito, S., Baba, D., Fukuda, T., Tanaka, N.
PDB entry 8z33: Crystal Structure of HIF-PHD2 in complex with compound 4
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-14
Authors: Ito, S., Baba, D., Fukuda, T., Tanaka, N.
PDB entry 8z35: Crystal Structure of HIF-PHD2 in complex with compound 7 (DS44470011)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-14
Authors: Ito, S., Baba, D., Fukuda, T., Tanaka, N.
PDB entry 8z36: Crystal structure of HOIP PUB domain in complex with sertraline complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2024-04-14
Authors: Zhong, F., Ruan, K.
PDB entry 8z37: Crystal structure of human STING ligand binding domain.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-04-14
Authors: Sun, P.K., Li, X.J.
PDB entry 8z38: FK506 binding protein 1B (including FK506)
Classification: PROTEIN BINDING
Source organism: Pyricularia oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-04-14
Authors: Liu, X.H., Zhao, W.H.
PDB entry 8z39: Crystal structure of Sonic hedgehog in complex with antibody 5E1 mutant L-T56A with metals
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-14
Authors: Caaveiro, J.M.M., Kaneda, I., Tsumoto, K.
PDB entry 8z3a: Crystal structure of Sonic hedgehog in complex with antibody 5E1 without metals
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-04-15
Authors: Caaveiro, J.M.M., Kaneda, I., Tsumoto, K.
PDB entry 8z3b: Crystal structure of GSTd2
Classification: TRANSFERASE
Source organism: Plutella xylostella
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-04-15
Authors: Mo, X., Yao, Y.
PDB entry 8z3d: SFX structure of CraCRY 1 us after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-15
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z3f: Complex structure of CIB2 and TMC1 CR1
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-04-15
Authors: Wu, S., Lin, L., Lu, Q.
PDB entry 8z3g: SFX structure of CraCRY 3 us after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-15
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z3h: Benzbromarone interferes with the interaction between Hsp90 and Aha1 by interacting with both of them
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-04-15
Authors: Shi, L., Zhong, Y., Tang, J., Xu, Z., Zhang, N.
PDB entry 8z3i: Crystal Structure of Protein Glutaminase FBPG(Flavobacterium sp.316)
Classification: HYDROLASE
Source organism: Flavobacterium sp. 316
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-04-15
Authors: Long, Y.T., Lan, D.M., Wang, Y.H.
PDB entry 8z3j: Benzbromarone interferes with the interaction between Hsp90 and Aha1 by interacting with both of them
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-04-15
Authors: Shi, L., Zhong, Y., Tang, J., Xu, Z., Zhang, N.
PDB entry 8z3k: The structure of type III CRISPR-associated deaminase in complex 2cA6-2ATP
Classification: IMMUNE SYSTEM
Source organism: Limisphaera ngatamarikiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-04-15
Authors: Chen, M.R., Li, Z.X., Xiao, Y.B.
PDB entry 8z3l: SFX structure of CraCRY 10 us after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-15
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z3m: Cryo-EM structure of the hGPR4-Gq complex in pH6.5
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-04-15
Authors: Zhong, Y.N., Guo, L.L., Yang, F., Sun, J.P.
PDB entry 8z3o: Cryo-EM structure of the receptor of hGPR68-Gs complex in pH6.0
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-15
Authors: Zhong, Y.N., Guo, L.L.
PDB entry 8z3p: The structure of type III CRISPR-associated deaminase in complex cA6 and ATP, fully activated
Classification: IMMUNE SYSTEM
Source organism: Limisphaera ngatamarikiensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-15
Authors: Chen, M.R., Li, Z.X., Xiao, Y.B.
PDB entry 8z3q: Cryo-EM structure of the hGPR4-Gs complex in pH7.6
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-04-15
Authors: Zhong, Y.N., Guo, L.L., Yang, F., Sun, J.P.
PDB entry 8z3r: The structure of type III CRISPR-associated deaminase in complex cA4
Classification: IMMUNE SYSTEM
Source organism: Limisphaera ngatamarikiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2024-04-16
Authors: Chen, M.R., Li, Z.X., Xiao, Y.B.
PDB entry 8z3s: Activation mechanism and novel binding site of the BKCa channel activator CTIBD
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-04-16
Authors: Lee, N., Kim, S., Jo, H., Lee, N.Y., Jin, M.S., Park, C.S.
PDB entry 8z3t: Structure of P-98/N44
Classification: VIRAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-04-16
Authors: Liu, N., Qin, B.
PDB entry 8z3w: Cryo-EM structure of SARS-CoV-2 D614G S with one ACE2 receptor binding (RB1) in prefusion conformation
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-04-16
Authors: Liu, Z., Xing, L.
PDB entry 8z3x: SFX structure of CraCRY 30 us after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-16
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z3y: Cryo-EM structure of of hGPR4-Gs complex in pH6.8
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-04-16
Authors: Zhong, Y.N., Guo, L.L.
PDB entry 8z40: The structure of type III CRISPR-associated deaminase apo form
Classification: IMMUNE SYSTEM
Source organism: Limisphaera ngatamarikiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-04-16
Authors: Chen, M.R., Li, Z.X., Xiao, Y.B.
PDB entry 8z41: SFX structure of CraCRY 100 us after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-16
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z43: Beta-galactosidase from Bacteroides xylanisolvens (E350G, ligand-free)
Classification: HYDROLASE
Source organism: Bacteroides xylanisolvens XB1A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-04-16
Authors: Nakajima, M., Motouchi, S., Kobayashi, K.
PDB entry 8z44: SFX structure of CraCRY 300 ns after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-16
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z45: SFX structure of CraCRY 300 us after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-16
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z46: SARS-CoV-2 3CL protease (3CL pro) in complex with a novel inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-04-16
Authors: Zhao, W.F., Xiong, L.W., Xu, Y.C.
PDB entry 8z47: Beta-galactosidase from Bacteroides xylanisolvens (ligand-free)
Classification: HYDROLASE
Source organism: Bacteroides xylanisolvens XB1A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2024-04-16
Authors: Nakajima, M., Motouchi, S., Kobayashi, K.
PDB entry 8z48: Beta-galactosidase from Bacteroides xylanisolvens (complex with methyl beta-galactopyranose)
Classification: HYDROLASE
Source organism: Bacteroides xylanisolvens XB1A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-04-16
Authors: Nakajima, M., Motouchi, S., Kobayashi, K.
PDB entry 8z49: Solution Structure of DRB7.2 M, the dsRBD region of DRB7.2
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2024-04-17
Authors: Deshmukh, M.V., Paturi, S., Patra, D.
PDB entry 8z4a: Solution Structure of DRB4 C-terminal domain, DRB4D3
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2024-04-17
Authors: Deshmukh, M.V., Paturi, S., Patra, D.
PDB entry 8z4b: Crystal structure of LysB22-AspB28 insulin analog at ambient structure
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-17
Authors: Ayan, E., Demirci, H.
PDB entry 8z4c: The Fab fragment of anti-Fibrin monoclonal antibody 59D8
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2024-04-17
Authors: Zhang, J., Sun, C.
PDB entry 8z4d: Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 34-fold symmetry applied
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-04-17
Authors: Takekawa, N., Nishikino, T., Kishikawa, J., Hirose, M., Kato, T., Imada, K., Homma, M.
PDB entry 8z4e: Structure of human 18_14D scFv and 1G01 scFv in complex with influenza virus neuraminidase from A/Yunan/DQ001/2016 (H5N6)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-17
Authors: Wang, M., Peng, Q., Gao, Y., Shi, Y.
PDB entry 8z4f: Pseudomurein Endoisopeptidases PeiP
Classification: LYASE
Source organism: Methanobacterium phage psiM2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-04-17
Authors: Guo, L., Bai, L.
PDB entry 8z4g: Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 35-fold symmetry applied
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-04-17
Authors: Takekawa, N., Nishikino, T., Kishikawa, J., Hirose, M., Kato, T., Imada, K., Homma, M.
PDB entry 8z4h: Pseudomurein Endoisopeptidase PeiR
Classification: HYDROLASE
Source organism: Methanobrevibacter ruminantium M1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-17
Authors: Guo, L.Z., Wang, S.X., Bai, L.p.
PDB entry 8z4i: crystal structure of Cdn1 in complex with cA3
Classification: RNA BINDING PROTEIN/RNA
Source organism: Psychrobacter lutiphocae DSM 21542; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-04-17
Authors: Zhang, W.
PDB entry 8z4j: Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at substrate-engaged state II
Classification: ANTIVIRAL PROTEIN
Source organism: metagenome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-04-17
Authors: Zhang, H., Deng, Z., Li, X.
PDB entry 8z4k: SFX structure of CraCRY 1 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-17
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z4l: Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at substrate-engaged state I
Classification: ANTIVIRAL PROTEIN
Source organism: metagenome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2024-04-17
Authors: Zhang, H., Deng, Z., Li, X.
PDB entry 8z4m: SFX structure of CraCRY 7 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-17
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z4n: Pseudomurein Endoisopeptidase PeiR-C90A
Classification: HYDROLASE
Source organism: Methanobrevibacter ruminantium M1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.769 Å
Deposited: 2024-04-17
Authors: Guo, L.Z., Wang, S.X., Bai, L.p.
PDB entry 8z4o: MERS-CoV post-fusion S ectodomain trimer
Classification: VIRAL PROTEIN
Source organism: Betacoronavirus England 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2024-04-17
Authors: Wang, X., Wang, Z.
PDB entry 8z4p: SFX structure of CraCRY 33 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-04-17
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z4q: The crystal structure of a Hydroquinone Dioxygenase PaD
Classification: OXIDOREDUCTASE
Source organism: Aspergillus westerdijkiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-04-17
Authors: Liu, Z.W., Huang, J.-W., Wang, Y.X., Chen, C.-C., Guo, R.-T.
PDB entry 8z4r: The crystal structure of a Hydroquinone Dioxygenase PaD with substrate
Classification: OXIDOREDUCTASE
Source organism: Aspergillus westerdijkiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2024-04-17
Authors: Liu, Z.W., Huang, J.-W., Wang, Y.X., Chen, C.-C., Guo, R.-T.
PDB entry 8z4s: The crystal structure of a Hydroquinone Dioxygenase PaD with nonnatural substrate S6
Classification: OXIDOREDUCTASE
Source organism: Aspergillus westerdijkiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-04-17
Authors: Liu, Z.W., Huang, J.-W., Wang, Y.X., Chen, C.-C., Guo, R.-T.
PDB entry 8z4t: MERS-CoV S ectodomain trimer in complex with receptor DPP4-750E
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2024-04-17
Authors: Wang, X., Wang, Z.
PDB entry 8z4u: SFX structure of CraCRY 66 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-17
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z4v: LH2 complex from Ectothiorhodospira haloalkaliphila at near-atomic resolution
Classification: PHOTOSYNTHESIS
Source organism: Ectothiorhodospira haloalkaliphila ATCC 51935
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.7 Å
Deposited: 2024-04-17
Authors: Burtseva, A.D., Baymukhametov, T.N., Popov, V.O., Ashikhmin, A.A., Boyko, K.M.
PDB entry 8z4w: Crystal structures of SARS-CoV-2 papain-like protease in complex with covalent inhibitors
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-04-17
Authors: Hu, H.C., Xu, Y.C.
PDB entry 8z4x: Cryo-EM structure of SARS-CoV-2 D614G S with two ACE2 receptors binding (RB2) in prefusion conformation
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-17
Authors: Liu, Z., Xing, L.
PDB entry 8z50: Crystal structure of the ASF1-H3T-H4 complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-04-18
Authors: Xu, L.
PDB entry 8z51: Hen Egg-White Lysozyme (HEWL) complexed with Emetine
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-04-18
Authors: Roy, A., Khanppnavar, B., Dolui, S., Datta, S., Maiti, N.C.
PDB entry 8z52: Hen Egg-White Lysozyme (HEWL) complexed with Theophylline
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-04-18
Authors: Roy, A., Khanppnavar, B., Dolui, S., Datta, S., Maiti, N.C.
PDB entry 8z53: Arabidopsis Dwarf14 (AtD14) co-crystallized in the presence of Zaxinone
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-04-18
Authors: Arold, S.T., Shahul Hameed, U.F.
PDB entry 8z54: Crystal structure of human SIRT5 in complex with succinylated Prx1 fragment
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-04-18
Authors: Yokoyama, T., Takayama, Y.
PDB entry 8z55: Crystal structure of human SIRT5 in complex with succPrx1 and ADP ribose
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-04-18
Authors: Yokoyama, T., Takayama, Y.
PDB entry 8z56: Crystal structure of human Q140L-SIRT5 in complex with succinylated Prx1 fragment
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.806 Å
Deposited: 2024-04-18
Authors: Yokoyama, T., Takayama, Y.
PDB entry 8z57: Crystal structure of human Q140L-SIRT5 in complex with succinylated Prx1 fragment and ADP ribose
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-04-18
Authors: Yokoyama, T., Takayama, Y.