LiteFold/PDB huggingface dataset:
PDB entry 8bk8: Cryo-EM structure of beta-galactosidase at 2.9 A resolution plunged 205 ms after mixing with apoferritin
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-11-08
Authors: Torino, S., Dhurandhar, M., Efremov, R.
PDB entry 8bk9: Cryo-EM structure of mouse heavy-chain apoferritin at 2.1 A plunged 5ms after mixing with b-galactosidase
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2022-11-08
Authors: Torino, S., Dhurandhar, M., Efremov, R.
PDB entry 8bka: Cryo-EM structure of mouse heavy-chain apoferritin at 2.7 A plunged 35ms after mixing with b-galactosidase
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-11-08
Authors: Torino, S., Dhurandhar, M., Efremov, R.
PDB entry 8bkb: Cryo-EM structure of mouse heavy-chain apoferritin at 2.2 A plunged 205ms after mixing with b-galactosidase
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-11-08
Authors: Torino, S., Dhurandhar, M., Efremov, R.
PDB entry 8bkd: structure of RutB
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-11-09
Authors: Rajendran, C.
PDB entry 8bke: Crystal structure of the Klebsiella phage KP34p57 capsular depolymerase
Classification: VIRAL PROTEIN
Source organism: Klebsiella phage KP34
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-11-09
Authors: Berisio, R., Squeglia, F.
PDB entry 8bkf: Structure of E. coli Class 2 L-asparaginase EcAIII, mutant M200T (crystal M200T#o)
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.221 Å
Deposited: 2022-11-09
Authors: Sciuk, A., Ruszkowski, M., Jaskolski, M., Loch, J.I.
PDB entry 8bkg: Cryo-EM structure of beta-galactosidase at 3.2 A resolution plunged 35 ms after mixing with apoferritin
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-11-09
Authors: Torino, S., Dhurandhar, M., Efremov, R.
PDB entry 8bkh: Carboxymyoglobin dark state for comparison with power titration and 23 / 101 mJ/cm2 time series
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-11-09
Authors: Barends, T., Schlichting, I.
PDB entry 8bkn: Carboxymyoglobin dark state for comparison with 5 mJ/cm2 time series
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2022-11-09
Authors: Barends, T., Schlichting, I.
PDB entry 8bky: Cryo-EM structure of a contractile injection system in Streptomyces coelicolor, the contracted sheath shell.
Classification: STRUCTURAL PROTEIN
Source organism: Streptomyces coelicolor A3(2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-11-09
Authors: Casu, B., Sallmen, J.W., Schlimpert, S., Pilhofer, M.
PDB entry 8bkz: GroEL:GroES-ATP complex under continuous turnover conditions
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2022-11-09
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8bl0: Human Sirt6 in complex with the inhibitor S6023 and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-11-09
Authors: You, W., Steegborn, C.
PDB entry 8bl1: Human Sirt6 in complex with the inhibitor S6039 and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-11-09
Authors: You, W., Steegborn, C.
PDB entry 8bl2: Structure of GroEL-ATP complex plunge frozen 200 ms after reaction initiation
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2022-11-09
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8bl3: De novo single-chain immunoglobulin dimer scIg12
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-11-09
Authors: Nadal, M., Roel-Touris, J., Marcos, E.
PDB entry 8bl4: Cryo-EM structure of a contractile injection system in Streptomyces coelicolor, the sheath-tube module in extended state.
Classification: STRUCTURAL PROTEIN
Source organism: Streptomyces coelicolor A3(2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-11-09
Authors: Casu, B., Sallmen, J.W., Schlimpert, S., Pilhofer, M.
PDB entry 8bl5: Crystal Structure of Sam0.2
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-11-09
Authors: Maksymenko, K., ElGamacy, M., Hartmann, M.D.
PDB entry 8bl6: De novo single-chain immunoglobulin dimer scIg12+EF3a
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-11-09
Authors: Nadal, M., Roel-Touris, J., Marcos, E.
PDB entry 8bl7: Structure of GroEL-nucleotide complex in ADP-like conformation plunged 13 ms after mixing with ATP
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2022-11-09
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8bl8: Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2022-11-09
Authors: Lopez-Sanchez, U., Nury, H.
PDB entry 8bl9: Crystal Structure of Sam0.7
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-11-09
Authors: Maksymenko, K., ElGamacy, M., Hartmann, M.D.
PDB entry 8bla: Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-11-09
Authors: Lopez-Sanchez, U., Nury, H.
PDB entry 8blb: Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-11-09
Authors: Lopez-Sanchez, U., Nury, H.
PDB entry 8blc: Structure of the GroEL-ATP complex plunge-frozen 50 ms after mixing with ATP
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-11-09
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8bld: Structure of the GroEL(ATP7/ADP7) complex plunged 13 ms after mixing with ATP
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2022-11-09
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8ble: Structure of GroEL-nucleotide complex in ADP-like conformation plunged 50 ms after mixing with ATP
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-11-09
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8blf: Structure of the GroEL(ATP7/ADP7) complex plunged 50 ms after mixing with ATP
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-11-09
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8blj: Crystal structure of the ligand-binding domain (LBD) of human iGluR Delta-1 (GluD1), apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2022-11-09
Authors: Heroven, C., Malinauskas, T., Aricescu, A.R.
PDB entry 8bll: Structure of RutB
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-11-09
Authors: Rajendran, C.
PDB entry 8blm: Structure of RutB
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-11-09
Authors: Rajendran, C.
PDB entry 8bln: Structure of RutB
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-11-09
Authors: Rajendran, C.
PDB entry 8blo: Human Urea Transporter UT-A (N-Terminal Domain Model)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-11-10
Authors: Chi, G., Pike, A.C.W., Maclean, E.M., Mukhopadhyay, S.M.M., Bohstedt, T., Scacioc, A., Wang, D., McKinley, G., Fernandez-Cid, A., Arrowsmith, C.H., Bountra, C., Edwards, A., Burgess-Brown, N.A., van Putte, W., Duerr, K.
PDB entry 8blp: Human Urea Transporter UT-B/UT1 in Complex with Inhibitor UTBinh-14
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-11-10
Authors: Chi, G., Dietz, L., Pike, A.C.W., Maclean, E.M., Mukhopadhyay, S.M.M., Bohstedt, T., Wang, D., Scacioc, A., McKinley, G., Arrowsmith, C.H., Edwards, A., Bountra, C., Fernandez-Cid, A., Burgess-Brown, N.A., Duerr, K.L.
PDB entry 8blq: Cryo-EM structure of the CODV-IL13-RefAb triple complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2022-11-10
Authors: Fernandez-Martinez, D., Kandiah, E.
PDB entry 8blr: G13D mutant of KRAS4b (2-169) bound to GDP with the switch-I in fully open conformation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-11-10
Authors: Moche, M., Jungholm, O., Strandback, E., Ampah-Korsah, H., Nyman, T., Orwar, O.
PDB entry 8bls: Structure of Lactobacillus salivarius (Ls) bile salt hydrolase(BSH) in complex with Glycocholate (GCA)
Classification: HYDROLASE
Source organism: Ligilactobacillus salivarius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-11-10
Authors: Karlov, D.S., Long, S.L., Zeng, X., Xu, F., Lal, K., Cao, L., Hayoun, K., Lin, J., Joyce, S.A., Tikhonova, I.G.
PDB entry 8blt: Structure of Lactobacillus salivarius (Ls) bile salt hydrolase(BSH) in complex with taurocholate (TCA)
Classification: HYDROLASE
Source organism: Ligilactobacillus salivarius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-11-10
Authors: Karlov, D.S., Long, S.L., Zeng, X., Xu, F., Lal, K., Cao, L., Hayoun, K., Lin, J., Joyce, S.A., Tikhonova, I.G.
PDB entry 8blu: The PDZ domains of human SDCBP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-11-10
Authors: Bradshaw, W.J., Katis, V.L., Daniel-Mozo, M., Bountra, C., von Delft, F., Brennan, P.E.
PDB entry 8blv: The PDZ domains of human SDCBP with a bound SDC4 C-terminal peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-11-10
Authors: Bradshaw, W.J., Katis, V.L., Daniel-Mozo, M., Bountra, C., von Delft, F., Brennan, P.E.
PDB entry 8blw: Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2022-11-10
Authors: Silale, A., Abellon-Ruiz, J., van den Berg, B.
PDB entry 8blx: Engineered Fructosyl Peptide Oxidase - X02A mutant
Classification: OXIDOREDUCTASE
Source organism: Parastagonospora nodorum SN15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-11-10
Authors: Estiri, H., Bhattacharya, S., Rodriguez-Buitrago, J.A., Parisini, E.
PDB entry 8bly: Structure of the GroEL-ATP complex plunge-frozen 13 ms after mixing with ATP
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-11-10
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8blz: Engineered Fructosyl Peptide Oxidase - D02 mutant
Classification: OXIDOREDUCTASE
Source organism: Parastagonospora nodorum SN15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-11-10
Authors: Estiri, H., Bhattacharya, S., Rodriguez-Buitrago, J.A., Parisini, E.
PDB entry 8bm0: Structure of GroEL:GroES-ATP complex plunge frozen 200 ms after reaction initiation
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-11-10
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8bm1: Structure of GroEL:GroES-ATP complex under continuous turnover conditions
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-11-10
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8bm2: Crystal structure of JAK2 JH1 in complex with gandotinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-11-10
Authors: Miao, Y., Haikarainen, T.
PDB entry 8bm3: H207A mutant of E. coli PgpB, a PAP2 type phosphatidyl glycerol phosphate and C55-PP phosphatase, in complex with farnesyl pyrophosphate
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-11-10
Authors: Delbrassine, F., El Ghachi, M., Lambion, A., Herman, R., Kerff, F.
PDB entry 8bm4: Hairpin adopted by modified oligonucleotide A32_mod found in the promoter of AUTS2 gene.
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-11-10
Authors: Novotny, A.
PDB entry 8bm5: Ternary structure of 14-3-3s, ERRg phosphopeptide and dual-reactive compound 7
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-11-10
Authors: Somsen, B.A., Ottmann, C.
PDB entry 8bm6: Hairpin adopted by oligonucleotide A36 found in the promoter of AUTS2 gene
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-11-10
Authors: Novotny, A.
PDB entry 8bm7: Hairpin adopted by oligonucleotide A38 found in the promoter of AUTS2 gene.
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-11-10
Authors: Novotny, A.
PDB entry 8bm8: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2022-11-10
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8bmd: Structure of GroEL-ATP complex under continuous turnover conditions
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-11-10
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8bmo: Structure of GroEL:GroES complex exhibiting ADP-conformation in trans ring obtained under the continuous turnover conditions
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-11-10
Authors: Dhurandhar, M., Torino, S., Efremov, R.
PDB entry 8bmp: Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to ATP and ADP
Classification: MEMBRANE PROTEIN
Source organism: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-11-10
Authors: Thangaratnarajah, C., Rheinberger, J., Paulino, C., Slotboom, D.J.
PDB entry 8bmq: Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to AMP-PNP
Classification: MEMBRANE PROTEIN
Source organism: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-11-10
Authors: Thangaratnarajah, C., Rheinberger, J., Paulino, C., Slotboom, D.J.
PDB entry 8bmr: Cryo-EM structure of the wild-type solitary ECF module in MSP2N2 lipid nanodiscs in the ATPase open and nucleotide-free conformation
Classification: MEMBRANE PROTEIN
Source organism: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-11-10
Authors: Thangaratnarajah, C., Rheinberger, J., Paulino, C., Slotboom, D.J.
PDB entry 8bms: Cryo-EM structure of the mutant solitary ECF module 2EQ in MSP2N2 lipid nanodiscs in the ATPase closed and ATP-bound conformation
Classification: MEMBRANE PROTEIN
Source organism: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-11-10
Authors: Thangaratnarajah, C., Rheinberger, J., Paulino, C., Slotboom, D.J.
PDB entry 8bmt: Structure of GroEL:GroES-ATP complex plunge frozen 200 ms after reaction initiation
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-11-10
Authors: Dhurandhar, M., Efremov, R., Torino, S.
PDB entry 8bmu: Engineered Fructosyl Peptide Oxidase - X04 mutant
Classification: OXIDOREDUCTASE
Source organism: Parastagonospora nodorum SN15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-11-11
Authors: Estiri, H., Bhattacharya, S., Rodriguez-Buitrago, J.A., Parisini, E.
PDB entry 8bmv: Ligand binding domain of the P. Putida receptor McpH in complex with Uric acid
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas putida KT2440
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-11-11
Authors: Gavira, J.A., Krell, T., Fernandez, M., Martinez-Rodriguez, S.
PDB entry 8bmw: SsoCsm
Classification: RNA BINDING PROTEIN
Source organism: Saccharolobus solfataricus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-11-11
Authors: Spagnolo, L., White, M.F.
PDB entry 8bmx: Bacteroides thetaiotaomicron B12 TonB dependent transporter in complex with a surface lipoprotein
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 3.72 Å
Deposited: 2022-11-11
Authors: Abellon-Ruiz, J., Jana, K., Silale, A., Basle, A., Kleinekathofer, U., van den Berg, B.
PDB entry 8bmy: Bacteroides thetaiotaomicron surface lipoprotein bound to cyanocobalamin
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-11-11
Authors: Abellon-Ruiz, J., Jana, K., Silale, A., Basle, A., Kleinekathofer, U., van den Berg, B.
PDB entry 8bmz: Bacteroides thetaiotaomicron surface lipoprotein BT1954 bound to adenosylcobalamin
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-11-11
Authors: Abellon-Ruiz, J., Jana, K., Silale, A., Basle, A., Kleinekathofer, U., van den Berg, B.
PDB entry 8bn0: Bacteroides thetaiotaomicron surface protein BT1954 bound to
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2022-11-11
Authors: Abellon-Ruiz, J., Jana, K., Silale, A., Basle, A., Kleinekathofer, U., van den Berg, B.
PDB entry 8bn1: The structures of Ace2 in complex with bicyclic peptide inhibitor
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2022-11-11
Authors: Brear, P., Lulla, A., Harman, M., Dods, R., Chen, L., Bezerra, G., Demydchuk, Y., Stanway, S., Hyvonen, M.
PDB entry 8bn2: Crystal structure of the ligand-binding domain (LBD) of human iGluR Delta-1 (GluD1) in complex with D-Serine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-11-11
Authors: Heroven, C., Malinauskas, T., Aricescu, A.R.
PDB entry 8bn3: Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-11-12
Authors: Dimitrova-Paternoga, L., Paternoga, H., Wilson, D.N.
PDB entry 8bn5: Crystal structure of the ligand-binding domain (LBD) of human iGluR Delta-1 (GluD1) in complex with GABA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-11-12
Authors: Heroven, C., Malinauskas, T., Aricescu, A.R.
PDB entry 8bn6: Pseudomonas aeruginosa DNA gyrase B 24kDa ATPase subdomain complexed with EBL3021
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-11-12
Authors: Durcik, M., Zega, A., Zidar, N., Ilas, J., Tomasic, T., Masic, L.P., Mundy, J.E.A., Stevenson, C.E.M., Burton, N., Lawson, D.M., Maxwell, A., Kikelj, D.
PDB entry 8bn7: CjCel5C endo-glucanase
Classification: HYDROLASE
Source organism: Cellvibrio japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.182 Å
Deposited: 2022-11-13
Authors: McGregor, N.G.S., Davies, G.J.
PDB entry 8bn8: METTL3-METTL14 heterodimer bound to the SAM competitive small molecule inhibitor STM3006
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.213 Å
Deposited: 2022-11-13
Authors: Pilka, E.S., Thomas, B., Blackaby, W., Hardick, D., Feeney, K., Ridgill, M., Rotty, B., Rausch, O.
PDB entry 8bna: BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1986-08-29
Authors: Pjura, P.E., Grzeskowiak, K., Dickerson, R.E.
PDB entry 8bnb: Crystal structure of Trichoplax Scribble PDZ2 domain
Classification: PROTEIN BINDING
Source organism: Trichoplax sp. H2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2022-11-14
Authors: Maddumage, J.C., Kvansakul, M.
PDB entry 8bnq: Crystal structure of the FnIII-tandem A84-A86 from the A-band of titin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-11-14
Authors: Zacharchenko, T., Fleming, J.R., Mayans, O.
PDB entry 8bnr: Escherichia coli anaerobic fatty acid beta oxidation trifunctional enzyme (anEcTFE) octameric complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.3 Å
Deposited: 2022-11-14
Authors: Sah-Teli, S.K., Pinkas, M., Novacek, J., Venkatesan, R.
PDB entry 8bns: Crystal structure of Pif1 from Sulfurihydrogenibium sp in complex with ADP
Classification: HYDROLASE
Source organism: Sulfurihydrogenibium sp. YO3AOP1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2022-11-14
Authors: Rety, S., Chen, W.F., Xi, X.G.
PDB entry 8bnt: The DH domain of ARHGEF2 bound to RhoA
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-11-25
Authors: Bradshaw, W.J., Katis, V.L., Grosjean, H., Bountra, C., von Delft, F., Brennan, P.E.
PDB entry 8bnu: Escherichia coli anaerobic fatty acid beta oxidation trifunctional enzyme (anEcTFE) tetrameric complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2022-11-14
Authors: Sah-Teli, S.K., Pinkas, M., Novacek, J., Venkatesan, R.
PDB entry 8bnv: Crystal structure of Pif1 from Deferribacter desulfuricans in apo from
Classification: HYDROLASE
Source organism: Deferribacter desulfuricans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2022-11-14
Authors: Rety, S., Chen, W.F., Xi, X.G.
PDB entry 8bnw: X-ray structure of the CeuE Homologue from Parageobacillus thermoglucosidasius - apo form
Classification: METAL TRANSPORT
Source organism: Parageobacillus thermoglucosidasius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.133 Å
Deposited: 2022-11-14
Authors: Blagova, E.V., Bennett, M., Booth, R., Dodson, E.J., Duhme-KLair, A.-K., Wilson, K.S.
PDB entry 8bnx: Crystal structure of Pif1 from Deferribacter desulfuricans in complex with AMPPNP
Classification: HYDROLASE
Source organism: Deferribacter desulfuricans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2022-11-14
Authors: Rety, S., Chen, W.F., Xi, X.G.
PDB entry 8bny: Structure of the tetramerization domain of pLS20 conjugation repressor Rco
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.429 Å
Deposited: 2022-11-14
Authors: Bernardo, N., Crespo, I., Meijer, W.J.J., Boer, D.R.
PDB entry 8bnz: BAM-EspP complex structure with BamA-G431C/EspP-N1293C mutations in nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12; Escherichia coli O157:H7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-11-14
Authors: Shen, C., Chang, S., Luo, Q., Zhang, Z., Xie, T., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhou, R., Zhang, X., Tang, X., Dong, H.
PDB entry 8bo0: Solution structure of Lqq4 toxin from Leiurus quinquestriatus quinquestriatus
Classification: TOXIN
Source organism: Leiurus quinquestriatus quinquestriatus
Experimental method: SOLUTION NMR
Deposited: 2022-11-14
Authors: Mineev, K.S., Motov, V.V., Vassilevski, A.A., Chernykh, M.A., Kuzmenkov, A.I.
PDB entry 8bo1: ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, bound to Latrunculin-B-ATP-Mg-actin, and 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE and 2 Mg ions
Classification: TOXIN
Source organism: Oryctolagus cuniculus; Vibrio nigripulchritudo
Experimental method: X-RAY DIFFRACTION
Resolution: 2.501 Å
Deposited: 2022-11-14
Authors: Teixeira-Nunes, M., Renault, L., Retailleau, P.
PDB entry 8bo2: BAM-EspP complex structure with BamA-S425C/EspP-S1299C mutations in nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-11-14
Authors: Shen, C., Chang, S., Luo, Q., Zhang, Z., Xie, T., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhou, R., Zhang, X., Tang, X., Dong, H.
PDB entry 8bo3: COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR Asundexian
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.841 Å
Deposited: 2022-11-14
Authors: Schaefer, M., Roehrig, S., Ackerstaff, J., Nunez, E.J., Gericke, K.M., Meier, K., Tersteegen, A., Stampfuss, J., Ellerbrock, P., Meibom, D., Lang, D., Heitmeier, S., Hillisch, A.
PDB entry 8bo4: COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 1
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-11-14
Authors: Schaefer, M., Roehrig, S., Ackerstaff, J., Nunez, E.J., Gericke, K.M., Meier, K., Tersteegen, A., Stampfuss, J., Ellerbrock, P., Meibom, M., Lang, D., Heitmeier, S., Hillisch, A.
PDB entry 8bo5: COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 3
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-11-14
Authors: Schaefer, M., Roehrig, S., Ackerstaff, J., Nunez, E.J., Gericke, K.M., Meier, K., Tersteegen, A., Stampfuss, J., Ellerbrock, P., Meibom, D., Lang, D., Heitmeier, S., Hillisch, A.
PDB entry 8bo6: COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 2
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2022-11-14
Authors: Schaefer, M., Roehrig, S., Ackerstaff, J., Nunez, E.J., Gericke, K.M., Meier, K., Tersteegen, A., Stampfuss, J., Ellerbrock, P., Meibom, D., Lang, D., Heitmeier, S., Hillisch, A.
PDB entry 8bo7: COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 34
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2022-11-14
Authors: Schaefer, M., Roehrig, S., Ackerstaff, J., Nunez, E.J., Gericke, K.M., Meier, K., Tersteegen, A., Stampfuss, J., Ellerbrock, P., Meibom, D., Lang, D., Heitmeier, S., Hillisch, A.
PDB entry 8bo8: X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with an inhibitor P17
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-11-15
Authors: Motlova, L., Barinka, C., Benesova, M.
PDB entry 8bo9: NanoLuc-D9R/H57A/K89R mutant complexed with azacoelenterazine bound in intra-barrel catalytic site
Classification: LUMINESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-11-15
Authors: Marek, M., Janin, L.Y.
PDB entry 8bob: Structural basis for negative regulation of the maltose system
Classification: TRANSCRIPTION
Source organism: Escherichia coli; Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2022-11-15
Authors: Chai, J., Wu, Y.
PDB entry 8boc: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 19
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-11-15
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8bod: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 20
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-11-15
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8boe: Human Carbonic Anhydrase I in complex with (S)-4-(3-(1-(6-nitropyridin-2-yl)pyrrolidin-3-yl)thioureido)benzenesulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-11-15
Authors: Angeli, A., Ferraroni, M.
PDB entry 8bof: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 12
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-11-15
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8bog: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-11-15
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8boh: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 8
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2022-11-15
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8boi: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-11-15
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8boj: Crystal structure of Trichoplax Scribble PDZ1 domain
Classification: PROTEIN BINDING
Source organism: Trichoplax sp. H2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-11-15
Authors: Maddumage, J.C., Kvansakul, M.
PDB entry 8bok: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-11-15
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8bol: X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with an inhibitor P18
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-11-15
Authors: Motlova, L., Barinka, C., Benesova, M.
PDB entry 8bom: Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 14
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2022-11-15
Authors: Linhard, V., Witt, K., Gande, S., Wollenhaupt, J., Lennartz, F., Weiss, M.S., Schwalbe, H.
PDB entry 8bon: Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Tequatrovirus T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-11-15
Authors: Hurdiss, D.L.
PDB entry 8boo: Spatials structure of amyloidogenic SEM1(45-67) peptide
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-11-15
Authors: Blokhin, D.S., Osetrina, D.A.
PDB entry 8bop: LSD1-CoREST in complex with AW4, long soaking
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2022-11-15
Authors: Caroli, J., Mattevi, A.
PDB entry 8boq: A. vinelandii Fe-nitrogenase FeFe protein
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: X-RAY DIFFRACTION
Resolution: 1.547 Å
Deposited: 2022-11-15
Authors: Trncik, C., Detemple, F., Einsle, O.
PDB entry 8bor: Photosensory module from DrBphP without PHY tongue
Classification: TRANSFERASE
Source organism: Deinococcus radiodurans R1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-11-15
Authors: Kurttila, M., Takala, H., Ihalainen, J.A.
PDB entry 8bos: Transition state analogue complex of small G protein and its GAP effector
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-11-15
Authors: Baumann, P., Jin, Y.
PDB entry 8bot: Cryo-EM structure of NHEJ supercomplex(trimer)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.76 Å
Deposited: 2022-11-15
Authors: Hardwick, S.W., Chaplin, A.K.
PDB entry 8bou: Crystal structure of Blautia producta GH94
Classification: HYDROLASE
Source organism: Blautia producta ATCC 27340 = DSM 2950
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2022-11-15
Authors: Levy, C.W.
PDB entry 8bov: X-ray structure of the adduct formed upon reaction of the five-coordinate Pt(II) complex, 1-Me,Me, with HEWL at pH 7.5
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2022-11-15
Authors: Ferraro, G., Tito, G., Merlino, A.
PDB entry 8bow: X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with an inhibitor 617
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-11-15
Authors: Motlova, L., Barinka, C., Benesova, M.
PDB entry 8box: LSD1-CoREST in complex with AW4 and SNAG peptide
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2022-11-15
Authors: Caroli, J., Mattevi, A.
PDB entry 8boy: X-ray structure of the adduct formed upon reaction of the five-coordinate Pt(II) complex, 1-Me,Me, with HEWL at pH 4.0
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2022-11-15
Authors: Ferraro, G., Tito, G., Merlino, A.
PDB entry 8boz: structure of the Adherent-Invasive Escherichia coli Tle3/Tli3 T6SS effector/immunity complex
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2022-11-15
Authors: Cambillau, C., Roussel, A.
PDB entry 8bp0: Crystal structure of BHMeHis1.8, an engineered enzyme for the Morita-Baylis-Hillman reaction
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.621 Å
Deposited: 2022-11-15
Authors: Hardy, F.J.
PDB entry 8bp1: Crystal structure of BHMeHis1.0, an engineered enzyme for the Morita-Baylis-Hillman reaction
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-11-15
Authors: Hardy, F.J.
PDB entry 8bp2: 2.8A STRUCTURE OF ZOLIFLODACIN WITH S.AUREUS DNA GYRASE AND DNA
Classification: ISOMERASE
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-11-15
Authors: Bax, B.D., Morgan, H., Warren, A.J.
PDB entry 8bp4: Crystal structure of Trichoplax Scribble PDZ2 domain in complex with Trichoplax Vangl peptide
Classification: PROTEIN BINDING
Source organism: Trichoplax sp. H2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2022-11-16
Authors: Maddumage, J.C., Kvansakul, M.
PDB entry 8bp5: Crystal structure of Trichoplax Dlg PDZ1 domain
Classification: PROTEIN BINDING
Source organism: Trichoplax sp. H2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2022-11-16
Authors: Maddumage, J.C., Kvansakul, M.
PDB entry 8bp6: Structure of MHC-class I related molecule MR1 with bound M3Ade.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-11-16
Authors: Berloffa, G., Jakob, R.P., Maier, T.
PDB entry 8bp7: Citrate-bound hexamer of Synechococcus elongatus citrate synthase
Classification: TRANSFERASE
Source organism: Synechococcus elongatus PCC 7942 = FACHB-805
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2022-11-16
Authors: Mais, C.-N., Sendker, F., Bange, G.
PDB entry 8bp8: SPA of Trypsin untreated Rotavirus TLP spike
Classification: VIRAL PROTEIN
Source organism: Rotavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-11-16
Authors: Shah, P.N.M., Stuart, D.I.
PDB entry 8bp9: Structure of E. coli Class 2 L-asparaginase EcAIII, mutant M200W (crystal M200W#2)
Classification: HYDROLASE
Source organism: Escherichia coli; Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-11-16
Authors: Sciuk, A., Jaskolski, M., Loch, J.I.
PDB entry 8bpa: Cryo-EM structure of the human SIN3B histone deacetylase complex at 3.7 Angstrom
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-11-16
Authors: Wan, M.S.M., Muhammad, R., Koliopolous, M.G., Alfieri, C.
PDB entry 8bpb: Cryo-EM structure of the human SIN3B histone deacetylase core complex at 2.8 Angstrom
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-11-16
Authors: Wan, M.S.M., Muhammad, R., Koliopolous, M.G., Alfieri, C.
PDB entry 8bpc: Cryo-EM structure of the human SIN3B histone deacetylase core complex with SAHA at 2.8 Angstrom
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-11-16
Authors: Wan, M.S.M., Muhammad, R., Koliopolous, M.G., Alfieri, C.
PDB entry 8bpd: Structural and Functional Characterization of the Novel Endo-alpha(1,4)-Fucoidanase Mef1 from the Marine Bacterium Muricauda eckloniae
Classification: HYDROLASE
Source organism: Muricauda eckloniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-11-16
Authors: Mikkelsen, M.D., Meyer, A.S., Morth, J.P.
PDB entry 8bpe: 8:1 binding of FcMR on IgM pentameric core
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2022-11-16
Authors: Chen, Q., Rosenthal, P., Tolar, P.
PDB entry 8bpf: FcMR binding at subunit Fcu1 of IgM pentamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-11-16
Authors: Chen, Q., Rosenthal, P., Tolar, P.
PDB entry 8bpg: FcMR binding at subunit Fcu3 of IgM pentamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-11-16
Authors: Chen, Q., Rosenthal, P., Tolar, P.
PDB entry 8bph: X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 3)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.07 Å
Deposited: 2022-11-16
Authors: Teran, A., Merlino, A., Ferraro, G.
PDB entry 8bpi: Human Gamma-D crystallin R36S mutant after UV illumination
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-11-16
Authors: Yorke, B.A., Hill, J.A.
PDB entry 8bpj: X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 1)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2023-01-17
Authors: Teran, A., Merlino, A., Ferraro, G.
PDB entry 8bpl: Aspartate transcarbamoylase mutant (N2045C, R2238C) from Chaetomium thermophilum CAD-like bound to carbamoyl phosphate
Classification: TRANSFERASE
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-11-16
Authors: del Cano-Ochoa, F., Ramon-Maiques, S.
PDB entry 8bpm: Crystal structure of Trichoplax Dlg PDZ3 domain
Classification: PROTEIN BINDING
Source organism: Trichoplax sp. H2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-11-17
Authors: Maddumage, J.C., Kvansakul, M.
PDB entry 8bpn: The structure of thiocyanate dehydrogenase mutant form with Phe 436 replaced by Gln from Thioalkalivibrio paradoxus
Classification: OXIDOREDUCTASE
Source organism: Thioalkalivibrio paradoxus ARh 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-01-09
Authors: Varfolomeeva, L.A., Solovieva, A.Y., Shipkov, N.S., Kulikova, O.G., Dergousova, N.I., Rakitina, T.V., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8bpo: Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-11-17
Authors: Hopfler, M., Absmeier, E., Passmore, L.A., Hegde, R.S.
PDB entry 8bpp: crystal structure of N-ethylmaleimide reductase (nemA) from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-11-17
Authors: Pfister, P., Tinzl, M., Erb, T.
PDB entry 8bpq: crystal structure of N-ethylmaleimide reductase with mutation Y187F (nemA Y187F) from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-11-17
Authors: Pfister, P., Tinzl, M., Erb, T.
PDB entry 8bpr: Complex of RecF-RecO-RecR-DNA from Thermus thermophilus (low resolution reconstruction).
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2022-11-17
Authors: Nirwal, S., Czarnocki-Cieciura, M., Chaudhary, A., Zajko, W., Skowronek, K., Chamera, S., Figiel, M., Nowotny, M.
PDB entry 8bps: Aspartate transcarbamoylase mutant (N2045C, R2238C) from Chaetomium thermophilum CAD-like in apo form
Classification: TRANSFERASE
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2022-11-25
Authors: del Cano-Ochoa, F., Ramon-Maiques, S.
PDB entry 8bpt: Crystal structure of the second bromodomain of BRD5 from Leishmania donovani
Classification: TRANSCRIPTION
Source organism: Leishmania donovani BPK282A1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-11-17
Authors: Wilkinson, A.J., Dodson, E.J., Jones, N.G., Borgia, J.
PDB entry 8bpu: X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 2)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-11-17
Authors: Teran, A., Merlino, A., Ferraro, G.
PDB entry 8bpv: Crystal structure of JAK2 JH1 in complex with pacritinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-11-18
Authors: Miao, Y., Haikarainen, T.
PDB entry 8bpw: Crystal structure of JAK2 JH1 in complex with lestaurtinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-11-18
Authors: Miao, Y., Haikarainen, T.
PDB entry 8bpx: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete composition)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.09 Å
Deposited: 2022-11-18
Authors: Klusch, N., Kuehlbrandt, W.
PDB entry 8bpy: X-RAY STRUCTURE OF PDE9A IN COMPLEX WITH Inhibitor 13A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-11-18
Authors: Steuber, H.
PDB entry 8bpz: Crystal structure of YopR
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-11-18
Authors: Gallego del Sol, F., Marina, A.
PDB entry 8bq1: Herpes simplex virus type 1 protease
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain 17
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2022-11-18
Authors: Pachota, M., Grzywa, R., Plewka, J., Wilk, P., Mackereth, C., Czarna, A., Sienczyk, M., Pyrc, K.
PDB entry 8bq2: CryoEM structure of the pre-synaptic RAD51 nucleoprotein filament in the presence of ATP and Ca2+
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-11-18
Authors: Appleby, R., Bollschweiler, D., Pellegrini, L.
PDB entry 8bq3: Crystal structure of human R13 mutant of the c-Src SH3 domain in complex with VSL12-peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2022-11-18
Authors: Varejao, N., Navarro, S., Ventura, S., Reverter, D.
PDB entry 8bq4: Crystal Structure of Phosphatidylinositol 5-Phosphate 4-Kinase (PI5P4K2C) bound to an inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-11-18
Authors: Ogg, D.J., Howard, T.D.
PDB entry 8bq5: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation 1 composition)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2022-11-18
Authors: Klusch, N., Kuehlbrandt, W.