LiteFold/PDB huggingface dataset:
PDB entry 8ww9: Structure of ADP-Form AsfvPrimPol Dodecamer
Classification: DNA BINDING PROTEIN/DNA
Source organism: African swine fever virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2023-10-25
Authors: Shi, T.H., Guo, Y.Y., Yan, R.H.
PDB entry 8wwa: Structure of AMPPNP-Form AsfvPrimPol Hexamer
Classification: DNA BINDING PROTEIN
Source organism: African swine fever virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-10-25
Authors: Shi, T.H., Guo, Y.Y., Yan, R.H.
PDB entry 8wwb: The sigma-1 receptor from Xenopus laevis in complex with dehydroepiandrosterone sulfate by soaking (I432 form)
Classification: MEMBRANE PROTEIN
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.503 Å
Deposited: 2023-10-25
Authors: Fu, C., Sun, Z., Zhou, X.
PDB entry 8wwc: De novo design binder of HRAS -120-4
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-10-25
Authors: Wang, L., Wang, S., Liu, Y.
PDB entry 8wwd: Crystal structure of (S)-DHPS dehydrogenase HpsP from Dinoroseobacter shibae DFL 12
Classification: OXIDOREDUCTASE
Source organism: Dinoroseobacter shibae DFL 12 = DSM 16493
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-25
Authors: Liu, L., Tang, K.
PDB entry 8wwe: Crystal structure of (R)-DHPS dehydrogenase HpsN from Ruegeria pomeroyi DSS-3
Classification: OXIDOREDUCTASE
Source organism: Ruegeria pomeroyi DSS-3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-10-25
Authors: Liu, L., Tang, K.
PDB entry 8wwf: Crystal structure of (R)-DHPS dehydrogenase HpsO from Ruegeria pomeroyi DSS-3
Classification: OXIDOREDUCTASE
Source organism: Ruegeria pomeroyi DSS-3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-25
Authors: Liu, L., Tang, K.
PDB entry 8wwg: The crystal structure of Legionella pneumophila adenosylhomocysteinase Lpg2021 complex with NAD
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.921 Å
Deposited: 2023-10-25
Authors: Gao, Y.S., Xie, R., Chen, Y.N.
PDB entry 8wwh: MCHR1-Gi complex,S1 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-10-25
Authors: Gong, W., Ye, X., Liu, G.
PDB entry 8wwi: MCHR1-Gi complex,S3 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-10-25
Authors: Gong, W., Ye, X., Liu, G.
PDB entry 8wwj: MCHR1-Gi complex,S2 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-10-25
Authors: Ye, X., Gong, W., Liu, G.
PDB entry 8wwk: MCH-MCHR1-Gi complex, T1 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2023-10-25
Authors: Gong, W., Ye, X., Liu, G.
PDB entry 8wwl: MCH-MCHR1-Gi complex, T2 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-10-25
Authors: Gong, W., Ye, X., Liu, G.
PDB entry 8wwm: MCH-MCHR1-Gi complex, L2 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-10-25
Authors: Gong, W., Ye, X., Liu, G.
PDB entry 8wwn: MCH-MCHR1-Gi complex,L1 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-10-25
Authors: Gong, W., Ye, X., Liu, G.
PDB entry 8wwo: Crystal structure of the AFSV topoisomerase ATPase domain in complex with AMPPNP
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-10-26
Authors: Kuang, W., Deng, Z.
PDB entry 8wwp: PNPase mutant of Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-10-26
Authors: Wang, N., Sheng, Y.N., Liu, Y.T.
PDB entry 8wwq: geniposidic acid O-methyltransferase complexed with SAH and geniposidic acid
Classification: PLANT PROTEIN
Source organism: Gardenia jasminoides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.958 Å
Deposited: 2023-10-26
Authors: Luo, Z., Li, L., Ma, D., Zhou, H.
PDB entry 8wwr: Crystal structure of apo human dishevelled 2 (Dvl2) PDZ domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-26
Authors: Omble, A., Mahajan, S., Kulkarni, K.A.
PDB entry 8wws: Crystal structure of cis-epoxysuccinate hydrolase from Klebsiella oxytoca with L(+)-tartaric acid
Classification: HYDROLASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-10-26
Authors: Han, Y., Kong, X.D., Li, J., Xu, J.H.
PDB entry 8wwt: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C393S
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2023-10-26
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8wwu: 1-naphthylamine GS in complex with AMP PNP
Classification: LIGASE
Source organism: Pseudomonas lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-26
Authors: Zhang, S.T., Zhou, N.Y.
PDB entry 8wwv: 1-naphthylamine GS in complex with ADP and MetSox-P
Classification: LIGASE
Source organism: Pseudomonas lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-26
Authors: Zhang, S.T., Zhou, N.Y.
PDB entry 8www: Crystal structure of the adenylation domain of SyAstC
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces yokosukanensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-10-27
Authors: Li, Z., Zhu, Z., Zhu, D., Shen, Y.
PDB entry 8wwx: Ube1L acts akin to a mitt, that mediates UbcH8 binding and orchestrates ""E1-E2"" interaction
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-10-27
Authors: Dag, C., Elgin, E.S., Lee, W., Ziarek, J.J.
PDB entry 8wwy: Crystal structure of mouse TIFA/TIFAB heterodimer
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-10-27
Authors: Nakamura, T.
PDB entry 8wwz: Crystal structure of Bacillus subtilis glyceraldehyde-3-phosphate dehydrogenase GapB
Classification: OXIDOREDUCTASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-27
Authors: Dahal, P., Pathak, D., Kwon, E., Kim, D.Y.
PDB entry 8wx0: PNPase of M.tuberculosis with its RNA substrate
Classification: TRANSFERASE/RNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-27
Authors: Wang, N., Sheng, Y.N.
PDB entry 8wx1: Cryo-EM structure of mouse SLC15A3 (outward-facing open)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2023-10-27
Authors: Kasai, S., Zhang, Z., Ohto, U., Shimizu, T.
PDB entry 8wx2: Cryo-EM structure of human SLC15A3 (dimer)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-10-27
Authors: Kasai, S., Zhang, Z., Ohto, U., Shimizu, T.
PDB entry 8wx3: Cryo-EM structure of human SLC15A4 (outward-facing open)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-10-27
Authors: Sakaniwa, K., Zhang, Z., Ohto, U., Shimizu, T.
PDB entry 8wx4: Cryo-EM structure of human SLC15A4 in complex with Lys-Leu (outward-facing open)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-10-27
Authors: Sakaniwa, K., Zhang, Z., Ohto, U., Shimizu, T.
PDB entry 8wx5: Cryo-EM structure of human SLC15A4 in complex with TASL (inward-facing open)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2023-10-27
Authors: Ohto, U., Zhang, Z., Fujimura, A., Shimizu, T.
PDB entry 8wx6: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/C393S
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2023-10-27
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8wx7: Crystal structure of SHP2 in complex with JAB-3186
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-10-27
Authors: Ma, C., Gao, P., Kang, D., Han, H., Sun, X., Zhang, W., Qian, D., Wang, Y., Long, W.
PDB entry 8wx8: De novo design protein -T09
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-27
Authors: Wang, C., Wang, S., Liu, Y.
PDB entry 8wxb: Cryo-EM structure of the alpha-carboxysome shell vertex from Prochlorococcus MED4
Classification: PHOTOSYNTHESIS
Source organism: Prochlorococcus sp. MED4
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-10-28
Authors: Jiang, Y.L., Zhou, R.Q., Zhou, C.Z., Zeng, Q.L.
PDB entry 8wxc: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A D170N/C240S/C393S
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2023-10-28
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8wxd: Crystal Structure of shaft pilin PilA from Streptococcus sanguinis
Classification: STRUCTURAL PROTEIN
Source organism: Streptococcus sanguinis SK36
Experimental method: X-RAY DIFFRACTION
Resolution: 1.995 Å
Deposited: 2023-10-28
Authors: Yadav, S., Parijat, P., Krishnan, V.
PDB entry 8wxe: Vgamma5Vdelta1 EH TCR-CD3 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-10-28
Authors: Xin, W., Huang, B., Chi, X., Xu, M., Zhang, Y., Li, X., Su, Q., Zhou, Q.
PDB entry 8wxf: PNPase of Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-10-29
Authors: Wang, N., Sheng, Y.N., Liu, Y.T.
PDB entry 8wxi: human CLC-1 D136G delayed rectification
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-10-29
Authors: Zhang, M.F.
PDB entry 8wxj: human CLC-1 D136G closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-10-29
Authors: Zhang, M.F.
PDB entry 8wxk: Crystal Structure of UDP-Glucose 4-Epimerase (all4713) with UDP-glucose and NAD from Nostoc sp. PCC 7120
Classification: ISOMERASE
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2023-10-30
Authors: Su, J.Y.
PDB entry 8wxl: Structure of the SARS-CoV-2 BA.2.86 spike glycoprotein (closed state)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-10-30
Authors: Yajima, H., Anraku, Y., Kita, S., Kimura, K., Maenaka, K., Hashiguchi, T.
PDB entry 8wxm: Crystal structure of substrate-binding protein from Rhodothermus marinus (Dose I)
Classification: PROTEIN TRANSPORT
Source organism: Rhodothermus marinus DSM 4252
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-10-30
Authors: Nam, K.H.
PDB entry 8wxn: Crystal structure of substrate-binding protein from Rhodothermus marinus (Dose II)
Classification: PROTEIN TRANSPORT
Source organism: Rhodothermus marinus DSM 4252
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-10-30
Authors: Nam, K.H.
PDB entry 8wxo: Crystal structure of substrate-binding protein from Rhodothermus marinus (Dose III)
Classification: PROTEIN TRANSPORT
Source organism: Rhodothermus marinus DSM 4252
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-10-30
Authors: Nam, K.H.
PDB entry 8wxp: Crystal structure of substrate-binding protein from Rhodothermus marinus (Dose IV)
Classification: PROTEIN TRANSPORT
Source organism: Rhodothermus marinus DSM 4252
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-30
Authors: Nam, K.H.
PDB entry 8wxq: Structure of WDR5 in complex with WIN motif containing MBD3C
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-30
Authors: Xu, L., Yang, Y.
PDB entry 8wxr: Structure of WDR5 in complex with WIN motif containing MBD3C F47A
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-10-30
Authors: Xu, L., Yang, Y.
PDB entry 8wxs: Crystal structure of the LOTUS domain of Drosophila Tejas
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-30
Authors: Huang, Y., Zhang, Y.
PDB entry 8wxt: Structure of WDR5 in complex with WIN motif containing MBD3C R45E/V46G
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-10-30
Authors: Xu, L., Yang, Y.
PDB entry 8wxu: Structure of WDR5 in complex with WIN motif containing MBD3C C44S/R45E/V46G
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2023-10-30
Authors: Xu, L., Yang, Y.
PDB entry 8wxv: Structure of WDR5 in complex with WIN motif containing SET1B
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-10-30
Authors: Xu, L., Yang, Y.
PDB entry 8wxw: Falcilysin in complex with hemoglobin alpha chain peptide
Classification: HYDROLASE
Source organism: Plasmodium falciparum 3D7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-10-30
Authors: Lin, J.Q., Lescar, J.
PDB entry 8wxx: Structure of WDR5 in complex with WIN motif containing SET1B E1750R/G1751V
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-10-30
Authors: Xu, L., Yang, Y.
PDB entry 8wxy: Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor 23
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2023-10-30
Authors: Xu, H., Zhao, X., Shen, H., Xu, Y., Wu, X.
PDB entry 8wxz: Falcilysin in complex with hemoglobin beta chain peptide
Classification: HYDROLASE
Source organism: Plasmodium falciparum 3D7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-30
Authors: Lin, J.Q., Lescar, J.
PDB entry 8wy0: T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-30
Authors: Xin, W., Huang, B., Chi, X., Liu, Y., Xu, M., Zhang, Y., Li, X., Su, Q., Zhou, Q.
PDB entry 8wy1: The structure of cyclization domain in cyclic beta-1,2-glucan synthase from Thermoanaerobacter italicus
Classification: TRANSFERASE
Source organism: Thermoanaerobacter italicus Ab9
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2023-10-30
Authors: Tanaka, N., Saito, R., Kobayashi, K., Nakai, H., Kamo, S., Kuramochi, K., Taguchi, H., Nakajima, M., Masaike, T.
PDB entry 8wy2: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A S176V/C240S/C393S
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2023-10-30
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8wy3: Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor 21
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-10-30
Authors: Xu, H., Zhao, X., Shen, H., Xu, Y., Wu, X.
PDB entry 8wy4: GajA tetramer with ATP
Classification: DNA BINDING PROTEIN
Source organism: Bacillus cereus VD045
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-10-30
Authors: Li, J., Wang, Z., Wang, L.
PDB entry 8wy5: Structure of Gabija GajA in complex with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Bacillus cereus VD045; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-10-30
Authors: Li, J., Wang, Z., Wang, L.
PDB entry 8wy7: Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor 22
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2023-10-30
Authors: Xu, H., Zhao, X., Shen, H., Xu, Y., Wu, X.
PDB entry 8wy8: Cryo-EM structure of DSR2 apo complex
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-30
Authors: Zhang, J.T., Jia, N., Liu, X.Y.
PDB entry 8wy9: Cryo-EM structure of DSR2 apo (partial) complex
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-10-30
Authors: Zhang, J.T., Jia, N., Liu, X.Y.
PDB entry 8wya: Cryo-EM structure of DSR2-tube complex
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus phage SPBc2; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-10-30
Authors: Zhang, J.T., Jia, N., Liu, X.Y.
PDB entry 8wyb: Cryo-EM structure of DSR2 (H171A)-tube-NAD+ complex
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus phage SPR; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-10-30
Authors: Zhang, J.T., Jia, N., Liu, X.Y.
PDB entry 8wyc: Cryo-EM structure of DSR2 (H171A)-tube-NAD+ (partial) complex
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus phage SPR; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-30
Authors: Zhang, J.T., Jia, N., Liu, X.Y.
PDB entry 8wyd: Cryo-EM structure of DSR2-DSAD1 complex
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus phage SPBc2; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2023-10-30
Authors: Zhang, J.T., Jia, N., Liu, X.Y.
PDB entry 8wye: Cryo-EM structure of DSR2-DSAD1 (partial) complex
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus phage SPBc2; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2023-10-30
Authors: Zhang, J.T., Jia, N., Liu, X.Y.
PDB entry 8wyf: Cryo-EM structure of DSR2-DSAD1-NAD+ (partial) complex
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus phage SPBc2; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-10-30
Authors: Zhang, J.T., Jia, N., Liu, X.Y.
PDB entry 8wyg: Crystal Structure of the second bromodomain of human BRD2 in complex with the inhibitor 22
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2023-10-30
Authors: Xu, H., Zhao, X., Shen, H., Xu, Y., Wu, X.
PDB entry 8wyh: The global map of Omicron Subvariants Spike with ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-31
Authors: Yan, R.H., Wang, A.J., Yang, H.N.
PDB entry 8wyi: T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-10-31
Authors: Xin, W., Huang, B., Chi, X., Liu, Y., Xu, M., Zhang, Y., Li, X., Su, Q., Zhou, Q.
PDB entry 8wyj: The global map of Omicron Subvariants Spike with two antibodies
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-31
Authors: Yan, R.H., Wang, A.J., Yang, H.N.
PDB entry 8wyp: High Resolution Crystal Structure of Brd4 BD-1 in Complex with a Novel Inhibitor Precursor
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-10-31
Authors: Liu, B., Ma, X.
PDB entry 8wyr: Cryo-EM structure of human CD5L bound to IgM-Fc/J
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-10-31
Authors: Wang, Y.X., Su, C., Xiao, J.Y.
PDB entry 8wys: Local map of human CD5L bound to IgM-Fc/J
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-10-31
Authors: Wang, Y.X., Su, C., Xiao, J.Y.
PDB entry 8wyt: Partially closed Falcilysin bound to MK-4815, from MK-4815-treated dataset
Classification: HYDROLASE
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-31
Authors: Lin, J.Q., Yan, X.F., Lescar, J.
PDB entry 8wyu: Open Falcilysin, from MK-4815-treated dataset
Classification: HYDROLASE
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-31
Authors: Lin, J.Q., Yan, X.F., Lescar, J.
PDB entry 8wyv: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A D170N/S176V/C240S/C393S
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2023-10-31
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8wyw: Crystal structure of spleen tyrosine kinase (SYK) in complex with SKI-O-592 (free form of SKI-O-703, cevidoplenib)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-31
Authors: Bong, S.M., Lee, B.I.
PDB entry 8wyx: Partially closed falcilysin, from free falcilysin dataset
Classification: HYDROLASE
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-31
Authors: Lin, J.Q., Yan, X.F., Lescar, J.
PDB entry 8wyy: Open falcilysin, from free falcilysin dataset
Classification: HYDROLASE
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-31
Authors: Lin, J.Q., Yan, X.F., Lescar, J.
PDB entry 8wz0: SARS-CoV-2 3CLpro bound to covalent inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-11-01
Authors: Peng, J., Sun, D., Ding, X.
PDB entry 8wz2: Structure of 26RFa-pyroglutamylated RFamide peptide receptor complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-11-01
Authors: Jin, S., Li, X., Xu, Y., Guo, S., Wu, C., Zhang, H., Yuan, Q., Xu, H.E., Xie, X., Jiang, Y.
PDB entry 8wz3: Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nAb 5B11
Classification: VIRAL PROTEIN
Source organism: Human respiratory syncytial virus A2; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-11-01
Authors: Liu, L., Sun, H., Sun, Y., Zheng, Q., Li, S., Zheng, Z., Xia, N.
PDB entry 8wz4: Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nAb 5B11 (localized refinement)
Classification: VIRAL PROTEIN
Source organism: Human respiratory syncytial virus A2; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-11-01
Authors: Liu, L., Sun, H., Sun, Y., Zheng, Q., Li, S., Zheng, Z., Xia, N.
PDB entry 8wz5: Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 sc9-10 strain: B18537) in complex with humanized nAb 5B11
Classification: VIRAL PROTEIN
Source organism: Human respiratory syncytial virus B; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2023-11-01
Authors: Liu, L., Sun, H., Sun, Y., Zheng, Q., Li, S., Zheng, Z., Xia, N.
PDB entry 8wz6: The crystal structure of Legionella pneumophila adenosylhomocysteinase Lpg2021 in ternary complex with NAD and DZNep
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-11-01
Authors: Gao, Y.S., Xie, R., Chen, Y.N., Ma, J.M., Ge, H.H.
PDB entry 8wz7: The crystal structure of Legionella pneumophila adenosylhomocysteinase Lpg2021(I255A,T287A) in ternary complex with NAD and adenosine
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.922 Å
Deposited: 2023-11-01
Authors: Gao, Y.S., Xie, R., Chen, Y.N., Ma, J.M., Ge, H.H.
PDB entry 8wz8: The crystal structure of Legionella pneumophila adenosylhomocysteinase Lpg2021(T67A,Q69A) complex with NAD
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.583 Å
Deposited: 2023-11-01
Authors: Gao, Y.S., Xie, R., Chen, Y.N., Ma, J.M., Ge, H.H.
PDB entry 8wz9: The crystal structure of Legionella pneumophila adenosylhomocysteinase Lpg2021 in ternary complex with NAD and adenine
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.649 Å
Deposited: 2023-11-01
Authors: Gao, Y.S., Xie, R., Chen, Y.N., Ma, J.M., Ge, H.H.
PDB entry 8wza: Cryo-EM structure of human pannexin 3 in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-11-01
Authors: Hang, Z., Huawei, Z., Daping, W.
PDB entry 8wzb: RS head-neck monomer
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-11-01
Authors: Meng, X., Cong, Y.
PDB entry 8wzc: NYN domain of human KHNYN complex with RNA
Classification: HYDROLASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.925 Å
Deposited: 2023-11-01
Authors: Hong, S., Choe, J.
PDB entry 8wzd: The Crystal Structure of PKCi from Biortus
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-11-01
Authors: Wang, F., Cheng, W., Lv, Z., Ju, C., Ni, C.
PDB entry 8wze: Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 sc9-10 strain: B18537) in complex with humanized nAb 5B11 (localized refinement)
Classification: VIRAL PROTEIN
Source organism: Human respiratory syncytial virus B; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-11-02
Authors: Liu, L., Sun, H., Sun, Y., Zheng, Q., Li, S., Zheng, Z., Xia, N.
PDB entry 8wzf: Dark state SFX structure of hen egg white lysozyme microcrystals immobilized with a Mn carbonyl complex at RT.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-01
Authors: Maity, B., Shoji, M., Luo, F., Nakane, T., Abe, S., Owada, S., Kang, J., Tono, K., Tanaka, R., Thuc, T.T., Kojima, M., Hishikawa, Y., Tanaka, J., Tian, J., Noya, H., Nakasuji, Y., Asanuma, A., Yao, X., Iwata, S., Shigeta, Y., Nango, E., Ueno, T.
PDB entry 8wzg: SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 10 ns after photoexcitation at RT.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-01
Authors: Maity, B., Shoji, M., Luo, F., Nakane, T., Abe, S., Owada, S., Kang, J., Tono, K., Tanaka, R., Thuc, T.T., Kojima, M., Hishikawa, Y., Tanaka, J., Tian, J., Noya, H., Nakasuji, Y., Asanuma, A., Yao, X., Iwata, S., Shigeta, Y., Nango, E., Ueno, T.
PDB entry 8wzh: Human erythrocyte catalase with SLS as additive during cryo-EM grid preparation
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-11-01
Authors: Yadav, S., Vinothkumar, K.R.
PDB entry 8wzi: One RBD up state of Spike glycoprotein, SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-01
Authors: Yadav, S., Vinothkumar, K.R.
PDB entry 8wzj: Human erythrocyte catalase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-01
Authors: Yadav, S., Vinothkumar, K.R.
PDB entry 8wzk: Human erythrocyte catalase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-11-01
Authors: Yadav, S., Vinothkumar, K.R.
PDB entry 8wzl: Arabidopsis thaliana Histone deacetylase 7 (HDA7)
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-11-02
Authors: Saharan, K., Vasudevan, D.
PDB entry 8wzm: Human erythrocyte catalase with CTAB as additive during EM sample preparation
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-02
Authors: Yadav, S., Vinothkumar, K.R.
PDB entry 8wzn: ParkinK211N in complex with phospho NEDD8
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-02
Authors: Lenka, D.R., Kumar, A.
PDB entry 8wzo: Parkin in complex with phospho NEDD8
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-11-02
Authors: Lenka, D.R., Kumar, A.
PDB entry 8wzp: Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with CCF0058981
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-11-02
Authors: Jiang, H.H., Zou, X.F., Zhou, X.L., Zhang, J., Li, J.
PDB entry 8wzq: Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with CCF0058981
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-11-02
Authors: Zou, X.F., Jiang, H.H., Zhou, X.L., Zhang, J., Li, J.
PDB entry 8wzr: SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 100 ns after photoexcitation at RT.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-02
Authors: Maity, B., Shoji, M., Luo, F., Nakane, T., Abe, S., Owada, S., Kang, J., Tono, K., Tanaka, R., Thuc, T.T., Kojima, M., Hishikawa, Y., Tanaka, J., Tian, J., Noya, H., Nakasuji, Y., Asanuma, A., Yao, X., Iwata, S., Shigeta, Y., Nango, E., Ueno, T.
PDB entry 8wzs: Crystal structure of SRCRD11 of human DMBT1 from needle-shape crystal
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-11-02
Authors: Zhang, C., Lu, P., Nagata, K.
PDB entry 8wzt: SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation at RT.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-02
Authors: Maity, B., Shoji, M., Luo, F., Nakane, T., Abe, S., Owada, S., Kang, J., Tono, K., Tanaka, R., Thuc, T.T., Kojima, M., Hishikawa, Y., Tanaka, J., Tian, J., Noya, H., Nakasuji, Y., Asanuma, A., Yao, X., Iwata, S., Shigeta, Y., Nango, E., Ueno, T.
PDB entry 8wzu: 4-hydroxybutyryl-CoA Synthetase (ADP-forming) from Nitrosopumilus maritimus.
Classification: LIGASE
Source organism: Nitrosopumilus maritimus SCM1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-11-02
Authors: Johnson, J., Demirci, H.
PDB entry 8wzv: SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation with 40 microJoules laser intensity at RT.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-02
Authors: Maity, B., Shoji, M., Luo, F., Nakane, T., Abe, S., Owada, S., Kang, J., Tono, K., Tanaka, R., Thuc, T.T., Kojima, M., Hishikawa, Y., Tanaka, J., Tian, J., Noya, H., Nakasuji, Y., Asanuma, A., Yao, X., Iwata, S., Shigeta, Y., Nango, E., Ueno, T.
PDB entry 8wzw: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/C393S/D394N
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.96 Å
Deposited: 2023-11-02
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8wzx: Cryo-EM structure of the hamster prion 23-144 fibril at pH 3.7
Classification: PROTEIN FIBRIL
Source organism: Mesocricetus auratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-11-02
Authors: Lee, C.-H., Saw, J.-E., Chen, E., Wang, C.-H., Chen, R.
PDB entry 8wzy: A novel amidohydrolase
Classification: HYDROLASE
Source organism: Klebsiella sp. PCX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-11-02
Authors: Feng, R., Ma, D.
PDB entry 8wzz: Short-chain dehydrogenase/reductase16 (SDR16) from Antrodia camphorata
Classification: OXIDOREDUCTASE
Source organism: Taiwanofungus camphoratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-02
Authors: Zhang, Y.Q., Zhang, M., Ye, M.
PDB entry 8x00: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/C393S/D394C
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-11-02
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8x01: Structure of the Mumps Virus L Protein (state2) Bound by Phosphoprotein Tetramer
Classification: VIRAL PROTEIN
Source organism: Mumps orthorubulavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-11-02
Authors: Li, T.H., Shen, Q.T.
PDB entry 8x02: E2 core of 2-oxoglutarate dehydrogenase complex
Classification: TRANSFERASE
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-03
Authors: Zhang, S.S., Zhang, Y.T.
PDB entry 8x03: Structure of mitochondrial soluble protein
Classification: TRANSFERASE
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2023-11-03
Authors: Zhang, S.S., Chen, M.F.
PDB entry 8x04: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/C393S/D394A
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2023-11-03
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8x05: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/C393S soaked in cellotriose
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2023-11-03
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8x06: Cryo-EM structure of the IR/IGF-I complex, conformation 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2023-11-03
Authors: Xi, Z.
PDB entry 8x09: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/C393S soaked in methyl-cellobiosyl-4-deoxy-4-thio-beta-D-cellobioside
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-11-04
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8x0a: Crystal Structure of MftR from mycobacterium tuberculosis
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-11-04
Authors: Peng, F., Ke, Z.H., Li, Y.
PDB entry 8x0b: Human FL Metabotropic glutamate receptor 5, mGlu5-5M with Quisqualate and VU0424465
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-04
Authors: Vinothkumar, K.R., Lebon, G., Cannone, G.
PDB entry 8x0c: Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate and VU0424465, conformer 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-04
Authors: Vinothkumar, K.R., Lebon, G., Cannone, G.
PDB entry 8x0d: Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate and VU0424465, conformer 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-04
Authors: Lebon, G., Cannone, G., Vinothkumar, K.R.
PDB entry 8x0e: Human FL Metabotropic glutamate receptor 5, mGlu5-5M with agonist and PAM, W785A mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-11-04
Authors: Vinothkumar, K.R., Lebon, G., Cannone, G.
PDB entry 8x0f: Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate and PAM VU29
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-04
Authors: Vinothkumar, K.R., Lebon, G., Cannone, G.
PDB entry 8x0g: Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate, Acc conformation (purified with PAM VU0409551 but not modelled)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-04
Authors: Vinothkumar, K.R., Lebon, G., Cannone, G.
PDB entry 8x0h: Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate, Rcc conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-11-04
Authors: Vinothkumar, K.R., Lebon, G., Cannone, G.
PDB entry 8x0i: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/C393S soaked in cellobioimidazole
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2023-11-04
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8x0j: old yellow enzymes-Q102A/Y169F/R215A/R308A
Classification: OXIDOREDUCTASE
Source organism: Geobacillus kaustophilus HTA426
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-11-04
Authors: Lei, W., Wei, S.
PDB entry 8x0k: Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR(2-fold)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Semliki Forest virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-04
Authors: Gao, F.G., Liu, S.
PDB entry 8x0l: Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR(3-fold)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Semliki Forest virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-04
Authors: Gao, F.G., Liu, S.
PDB entry 8x0m: Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR(5-fold)
Classification: VIRAL PROTEIN
Source organism: Semliki Forest virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-04
Authors: Gao, F.G., Liu, S.
PDB entry 8x0n: The molecular mechanism of hnRNPA1 recognize TERRA RNA.
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-11-05
Authors: Xu, Z.Y., Liu, Y., Li, F.
PDB entry 8x0o: Crystal structure of Tyrosine decarboxylase H203F mutant in complex with the cofactor PLP and Tyrosine
Classification: LYASE
Source organism: Papaver somniferum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-11-05
Authors: Wang, H., Yu, J., Yao, M.
PDB entry 8x0p: Crystal structure of Tyrosine decarboxylase in complex with the cofactor PLP and inhibitor carbidopa
Classification: LYASE
Source organism: Papaver somniferum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-11-05
Authors: Wang, H., Yu, J., Yao, M.
PDB entry 8x0q: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/C393S/D394C cocrystallized with cellotriose
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2023-11-05
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8x0r: solution structure of Cry j 7
Classification: STRUCTURAL PROTEIN
Source organism: Cryptomeria japonica
Experimental method: SOLUTION NMR
Deposited: 2023-11-05
Authors: Zheng, J., Aizawa, T., Kumeta, H.
PDB entry 8x0s: Crystal structure of r(G4C2)2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.956 Å
Deposited: 2023-11-05
Authors: Geng, Y., Liu, C., Cai, Q., Zhu, G.
PDB entry 8x0t: Frizzled8 CRD in complex with pF8_AC3 Fab
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-11-06
Authors: Li, N., Ge, Q.
PDB entry 8x0u: Crystal structure of cupin-like fold protein StrC from Stachybotrys sp.g12
Classification: BIOSYNTHETIC PROTEIN
Source organism: Stachybotrys sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-11-06
Authors: Wang, H., Wang, W.G.
PDB entry 8x0v: Crystal structure of cupin-like fold protein StrC in complex with substrate analogue from Stachybotrys sp.g12
Classification: BIOSYNTHETIC PROTEIN
Source organism: Stachybotrys sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-11-06
Authors: Wang, H., Wang, W.G.
PDB entry 8x0w: Overall structure of the LAT1-4F2hc bound with Leu
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-06
Authors: Yan, R.H., Li, Y.N., Shi, T.H.
PDB entry 8x0x: Crystal structure of JE-5C in complex with SARS-CoV-2 RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2023-11-06
Authors: Mohapatra, A., Chen, X.
PDB entry 8x0y: Crystal structure of JM-1A in complex with SARS-CoV-2 RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-11-06
Authors: Mohapatra, A., Chen, X.
PDB entry 8x0z: Crystal structure of A101C/A120C mutant of FfIBP
Classification: ANTIFREEZE PROTEIN
Source organism: Flavobacterium frigoris PS1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-06
Authors: Nam, Y., Do, H.
PDB entry 8x15: Structure of nucleosome-bound SRCAP-C in the apo state
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-06
Authors: Yu, J., Wang, Q., Yu, Z., Li, W., Wang, L., Xu, Y.
PDB entry 8x16: Cryo-EM structure of adenosine receptor A3AR bound to CF101
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-11-06
Authors: Cai, H., Xu, Y., Xu, H.E.
PDB entry 8x17: Cryo-EM structure of adenosine receptor A3AR bound to CF102
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-11-06
Authors: Cai, H., Xu, Y., Xu, H.E.
PDB entry 8x18: Xanthomonas campestris pv. campestris OpgD mutant-D379N with beta-1,2-glucan
Classification: TRANSFERASE
Source organism: Xanthomonas campestris pv. campestris str. ATCC 33913
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-11-06
Authors: Motouchi, S., Nakajima, M.
PDB entry 8x19: Structure of nucleosome-bound SRCAP-C in the ADP-BeFx-bound state
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-06
Authors: Yu, J., Wang, Q., Yu, Z., Li, W., Wang, L., Xu, Y.
PDB entry 8x1a: Crystal structure of periplasmic G6P binding protein VcA0625
Classification: SUGAR BINDING PROTEIN
Source organism: Vibrio cholerae O395
Experimental method: X-RAY DIFFRACTION
Resolution: 1.604 Å
Deposited: 2023-11-06
Authors: Dasgupta, J., Saha, I.
PDB entry 8x1b: Cryo-EM structure of FpGalactosaminidase from Flavonifractor plautii in apo state
Classification: HYDROLASE
Source organism: Flavonifractor plautii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-11-06
Authors: Wu, G., Han, P., Su, C., Zhou, M., Luo, K.
PDB entry 8x1c: Structure of nucleosome-bound SRCAP-C in the ADP-bound state
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-06
Authors: Yu, J., Wang, Q., Yu, Z., Li, W., Wang, L., Xu, Y.
PDB entry 8x1d: Crystal structure of GH11 from Thermoanaerobacterium saccharolyticum (pH8.5)
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-07
Authors: Nam, K.H.
PDB entry 8x1f: Crystal structure of an omega-transaminase mutant from Aspergillus terreus with in complex with PLP
Classification: TRANSLOCASE
Source organism: Aspergillus terreus (strain NIH 2624 / FGSC A1156)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-11-07
Authors: Hu, D., Lu, Z.Y., Xu, D.Z., He, Y.C.