LiteFold/PDB huggingface dataset:
PDB entry 9ims: Crystal structure of C45 isoprenyl diphosphate synthase Rv0562 variant D98R/D223R from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-07-04
Authors: Wang, Q., Yang, Y., Chen, C.-C., Guo, R.-T.
PDB entry 9imu: The complex of rice immune receptor RGA5-HMA8 with rice blast effector protein AVR-PikD
Classification: PLANT PROTEIN
Source organism: Oryza sativa; Pyricularia oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2024-07-04
Authors: Zhang, X., Liu, J.
PDB entry 9imv: Structure of the urea-treated empty bacteriophage T5 portal complex
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T5
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-07-04
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9imw: Crystal structure of N-terminal domain of human Hsp90
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.527 Å
Deposited: 2024-07-04
Authors: Huang, L.Q., Yu, F.
PDB entry 9imx: Immune complex of HEV E2s and P1-5B nanobody
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Hepatitis E virus (strain Pakistan); Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-07-04
Authors: Tingting, L., Wenhui, X., Ying, G., Shaowei, L.
PDB entry 9imy: Solution structure of MAX1A G-quadruplex DNA
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2024-07-05
Authors: Hu, X., Cao, C.
PDB entry 9imz: CODANIN-1 sequesters ASF1 by using a histone H3 mimic helix to regulate histone supply
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2024-07-05
Authors: Jeong, T.K., Frater, R.C.M., Yoon, J., Groth, A., Song, J.J.
PDB entry 9in1: Crystal Structure of C-terminal domain of nucleocapsid protein from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-07-05
Authors: Dhaka, P., Mahto, J.K., Tomar, S., Kumar, P.
PDB entry 9in6: Capsid of Vibrio cholerae phage mature VP1
Classification: VIRAL PROTEIN
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-07-05
Authors: Liu, H.R., Pang, H.
PDB entry 9in7: True-atomic resolution crystal structure of the closed state of the viral channelrhodopsin OLPVR1
Classification: MEMBRANE PROTEIN
Source organism: Organic Lake phycodnavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2024-07-05
Authors: Bukhdruker, S., Zabelskii, D., Astashkin, R., Gordeliy, V.
PDB entry 9in8: True-atomic resolution crystal structure of the open state of the viral channelrhodopsin OLPVR1
Classification: MEMBRANE PROTEIN
Source organism: Organic Lake phycodnavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2024-07-05
Authors: Bukhdruker, S., Zabelskii, D., Astashkin, R., Bourenkov, G., Gordeliy, V.
PDB entry 9in9: Structure of the viral channelrhodopsin OLPVR1 at low pH obtained by soaking
Classification: MEMBRANE PROTEIN
Source organism: Organic Lake phycodnavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2024-07-05
Authors: Bukhdruker, S., Zabelskii, D., Astashkin, R., Gordeliy, V.
PDB entry 9ina: Crystal Structure of isophthalate dioxygenase from Comamonas testosteroni KF1
Classification: OXIDOREDUCTASE
Source organism: Comamonas testosteroni KF-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2024-07-06
Authors: Mahto, J.K., Kumar, P.
PDB entry 9inc: High resolutional Crystal Structure of human H2A.Z-H2B dimer in complex with human YL1-Z domain
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-07-06
Authors: Tan, W.S., Liu, Y., Hong, J.J.
PDB entry 9ind: Integrin alpha-v beta-8 in complex with the Fab of 130H2
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-07-06
Authors: Sun, H., Zheng, Q., Gui, X.
PDB entry 9ine: Cryo-EM structure of human XPR1 in closed state in the presence of KIDINS220-1-432
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-07-06
Authors: Zuo, P., Liang, L., Yin, Y.
PDB entry 9inf: Cryo-EM structure of human XPR1 in closed state in the presence of KIDINS220-1-432 and 10 mM KH2PO4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-07-06
Authors: Yin, Y., Zuo, P., Liang, L.
PDB entry 9inh: Cryo-EM structure of human XPR1 in complex with InsP6 in outward-facing state (SPX visible)-in the presence of KIDINS220-1-432 and 10 mM KH2PO4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-07-06
Authors: Zuo, P., Liang, L., Yin, Y.
PDB entry 9ink: Crystal structure of beta-carotene-binding protein (BBP) from Schistocerca gregaria complexed with beta-carotene
Classification: LIPID BINDING PROTEIN
Source organism: Schistocerca gregaria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-07-08
Authors: Boyko, K.M., Varfolomeeva, L.A., Egorkin, N.A., Popov, V.O., Sluchanko, N.N.
PDB entry 9inl: Crystal structure of SARS-Cov-2 main protease E166R mutant in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-07-08
Authors: Zhou, X.L., Li, J.
PDB entry 9inm: Crystal structure of MERS main protease in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-07-08
Authors: Wang, W.W., Zhou, X.L., Wang, Q.S., Li, J.
PDB entry 9inn: Human Pin1 (Peptidyl-prolyl cis-trans isomerase) catalytic domain complexed with a covalent inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-07-08
Authors: Wang, X.Y., Tian, M.Z., Zhou, J., Xu, B.L.
PDB entry 9ino: Human Pin1 (Peptidyl-prolyl cis-trans isomerase) catalytic domain in complex with a covalent inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-07-08
Authors: Wang, X.Y., Tian, M.Z., Zhou, J., Xu, B.L.
PDB entry 9inp: Human Pin1 (Peptidyl-prolyl cis-trans isomerase) catalytic domain in complex with a covalent inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2024-07-08
Authors: Wang, X.Y., Tian, M.Z., Zhou, J., Xu, B.L.
PDB entry 9inq: Crystal Structure of human Pin1 catalytic domain in complex with a covalent inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-07-08
Authors: Wang, X.Y., Tian, M.Z., Zhou, J., Xu, B.L.
PDB entry 9inr: Crystal structure of PIN1 in complex with inhibitor C3
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-07-08
Authors: Zhang, L.J., Zhang, L.Y.
PDB entry 9ins: MONOVALENT CATION BINDING IN CUBIC INSULIN CRYSTALS
Classification: HORMONE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 1991-10-23
Authors: Badger, J., Dodson, G.G.
PDB entry 9int: Crystal structure of the complex of the beta,kappa-carrageenase Cgbk16A from Wenyingzhuangia fucanilytica with an oligosaccharide of furcellaran
Classification: HYDROLASE
Source organism: Wenyingzhuangia fucanilytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2024-07-08
Authors: Chang, Y., Chen, F.
PDB entry 9inu: Novel PD-L1/VISTA dual inhibitor as potential immunotherapy agents
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-07-08
Authors: Cheng, Y., Xiao, Y.B.
PDB entry 9inv: Crystal structure of DAPK1 in complex with isoliquiritigenin
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2024-07-08
Authors: Yokoyama, T.
PDB entry 9inw: Crystal structure of DAPK1 in complex with compound 9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-07-08
Authors: Yokoyama, T.
PDB entry 9inx: Crystal structure of DAPK1 in complex with compound 10
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-07-08
Authors: Yokoyama, T.
PDB entry 9iny: Structure of bacteriophage T5 tail tube
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-07-08
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9inz: Hemichannel sub-structure of Cx43/GJA1 gap junction intercellular channel, treated with a 5-molar excess of carbenoxolone
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2024-07-08
Authors: Lee, C.W.
PDB entry 9io0: INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-07-08
Authors: Ichijo, R., Kawai, G.
PDB entry 9io1: INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT RESIDUES
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-07-08
Authors: Ichijo, R., Kawai, G.
PDB entry 9io2: Tilapia Piscidin-TP2-5
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-07-08
Authors: Huang, Y.P., Chang, C.F.
PDB entry 9io3: D-Amino Acid Substituted Antimicrobial Peptides Derived from Tilapia piscidin 4
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-07-08
Authors: Huang, Y.P., Chang, C.F.
PDB entry 9io5: Cryo-EM structure of G1-ATPase dimer from Mycoplasma mobile gliding machinery
Classification: HYDROLASE
Source organism: Mycoplasma mobile 163K
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-07-08
Authors: Toyonaga, T., Kato, T., Kawamoto, A., Miyata, T., Kawakami, K., Fujita, J., Hamaguchi, T., Namba, K., Miyata, M.
PDB entry 9io6: Crystal Structure of SME-1 Carbapenemase in complex with Nacubactam.
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2024-07-08
Authors: Dhankhar, K., Hazra, S.
PDB entry 9io7: Crystal Structure of SME-1 Carbapenemase in complex with Zidebactam
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-07-08
Authors: Dhankhar, K., Hazra, S.
PDB entry 9ioa: Cryo-EM structure of the tetrameric DRT9-ncRNA complex
Classification: ANTIVIRAL PROTEIN/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-07-08
Authors: Zhang, J.T., Song, X.Y., Wei, X.Y., Jia, N.
PDB entry 9iob: Cryo-EM structure of the hexameric DRT9-ncRNA complex
Classification: ANTIVIRAL PROTEIN/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-07-08
Authors: Zhang, J.T., Song, X.Y., Xia, Y.S., Liu, Y.J., Jia, N.
PDB entry 9iok: Crystal Structure of Sortase E from Thermobifida fusca
Classification: HYDROLASE
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-07-09
Authors: Sharma, V., Murmu, S., Megta, A., Roy, R.P., Krishnan, V.
PDB entry 9iol: Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-07-09
Authors: Liang, S.
PDB entry 9iom: CapE apo form
Classification: LIPID BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.648 Å
Deposited: 2024-07-09
Authors: Gao, A., Wang, J.G.
PDB entry 9ion: Cryo-EM structure of cUA bound CapE filament
Classification: LIPID BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-07-09
Authors: Gao, A., Wang, J.G.
PDB entry 9iop: Cryo-EM structure of cUA and MAFP bound CapE filament
Classification: LIPID BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-07-09
Authors: Gao, A., Wang, J.G.
PDB entry 9ioq: Crystal structure of CapE bound cUA
Classification: LIPID BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2024-07-09
Authors: Gao, A., Wang, J.G.
PDB entry 9ior: INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-07-09
Authors: Ichijo, R., Kawai, G.
PDB entry 9ios: INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-07-09
Authors: Ichijo, R., Kawai, G.
PDB entry 9iot: Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-07-09
Authors: Tanzawa, T., Minami, A., Yoshida, H., Kato, T., Ogawa, T.
PDB entry 9iou: INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-07-09
Authors: Ichijo, R., Kawai, G.
PDB entry 9iov: Gossypol bound lactate dehydrogenase A
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.98 Å
Deposited: 2024-07-09
Authors: Ha, M.S., Han, C.W., Jeong, M.S., Jang, S.B.
PDB entry 9iow: Crystal Structure of SME-1 E166A Mutant in complex with Cefaclor
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-07-09
Authors: Dhankhar, K., Hazra, S.
PDB entry 9iox: Cryo-EM structure of a TEF30-associated intermediate PSII core dimer complex, type II, from Chlamydomonas reinhardtii
Classification: PHOTOSYNTHESIS
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-07-09
Authors: Wang, Y., Wang, C., Li, A., Liu, Z.
PDB entry 9ioy: Isophthalate dioxygenase in complex with isophthalate
Classification: OXIDOREDUCTASE
Source organism: Comamonas testosteroni KF-1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-07-10
Authors: Jangid, K., Mahto, J.K., Kumar, P.
PDB entry 9ioz: Structure of the bacteriophage T5 tail tip complex
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-07-10
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9ip0: Cryo-EM structure of ClpB1 heptamer from Oryza sativa
Classification: PLANT PROTEIN
Source organism: Oryza sativa subsp. japonica
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-07-10
Authors: Jobichen, C., Saharan, K., Vasudevan, D., Sivaraman, J.
PDB entry 9ip2: Cryo-EM structure of the RNA-dependent RNA polymerase complex from Marburg virus
Classification: VIRAL PROTEIN
Source organism: Escherichia coli K-12; Marburg virus - Musoke, Kenya, 1980
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-07-10
Authors: Li, G., Du, T., Wang, J., Wu, S., Ru, H.
PDB entry 9ip3: Cryo-EM structure of the RNA-dependent RNA polymerase complex in a compact conformation from Ebola virus
Classification: VIRAL PROTEIN
Source organism: Ebola virus - Eckron (Zaire, 1976); Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-07-10
Authors: Li, G., Du, T., Wang, J., Wu, S., Ru, H.
PDB entry 9ip4: Cryo-EM structure of the RNA-dependent RNA polymerase complex from Marburg virus
Classification: VIRAL PROTEIN
Source organism: Escherichia coli K-12; Marburg virus - Musoke, Kenya, 1980
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-07-10
Authors: Li, G., Du, T., Wang, J., Wu, S., Ru, H.
PDB entry 9ip5: Hemichannel sub-structure of Cx36/GJD2 gap junction intercellular channel (FN conformation) in brain polar lipid nanodiscs, treated with a 14-fold molar excess of carbenoxolone
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-07-10
Authors: Jang, H.S.
PDB entry 9ip6: The complex of rice immune receptor RGA5-HMA8 with rice blast effector protein AVR1-CO39
Classification: PLANT PROTEIN
Source organism: Oryza sativa; Pyricularia grisea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2024-07-10
Authors: Zhang, X., Liu, J.
PDB entry 9ip7: Local refinement structure of sEGFR and 528 Fv (from HL-type bispecific diabody Ex3) complex
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-07-10
Authors: Sato, K., Uehara, S., Tsugita, A., Matsui, T., Asano, R., Makabe, K., Yokoyama, T., Tanaka, Y.
PDB entry 9ip8: Poly-alanine model for HL-type bispecific diabody Ex3 composed of 528 and OKT3 Fvs in ternary complex with sEGFR and CD3gamma-epsilon (closed conformation)
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2024-07-10
Authors: Sato, K., Uehara, S., Tsugita, A., Matsui, T., Asano, R., Makabe, K., Yokoyama, T., Tanaka, Y.
PDB entry 9ip9: Poly-alanine model for HL-type bispecific diabody Ex3 composed of 528 and OKT3 Fvs in ternary complex with sEGFR and CD3gamma-epsilon (middle conformation)
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2024-07-10
Authors: Sato, K., Uehara, S., Tsugita, A., Matsui, T., Asano, R., Makabe, K., Yokoyama, T., Tanaka, Y.
PDB entry 9ipa: Poly-alanine model for HL-type bispecific diabody Ex3 composed of 528 and OKT3 Fvs in ternary complex with sEGFR and CD3gamma-epsilon (open conformation)
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2024-07-10
Authors: Sato, K., Uehara, S., Tsugita, A., Matsui, T., Asano, R., Makabe, K., Yokoyama, T., Tanaka, Y.
PDB entry 9ipb: Local refinement structure of sEGFR and 528 Fv (from LH-type bispecific diabody Ex3) complex
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-07-10
Authors: Sato, K., Uehara, S., Tsugita, A., Matsui, T., Asano, R., Makabe, K., Yokoyama, T., Tanaka, Y.
PDB entry 9ipc: Poly-alanine model for LH-type bispecific diabody Ex3 composed of 528 and OKT3 Fvs in ternary complex with sEGFR and CD3gamma-epsilon (closed conformation)
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-07-10
Authors: Sato, K., Uehara, S., Tsugita, A., Matsui, T., Asano, R., Makabe, K., Yokoyama, T., Tanaka, Y.
PDB entry 9ipd: Poly-alanine model for LH-type bispecific diabody Ex3 composed of 528 and OKT3 Fvs in ternary complex with sEGFR and CD3gamma-epsilon (middle conformation)
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-07-10
Authors: Sato, K., Uehara, S., Tsugita, A., Matsui, T., Asano, R., Makabe, K., Yokoyama, T., Tanaka, Y.
PDB entry 9ipe: Poly-alanine model for LH-type bispecific diabody Ex3 composed of 528 and OKT3 Fvs in ternary complex with sEGFR and CD3gamma-epsilon (open conformation)
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-07-10
Authors: Sato, K., Uehara, S., Tsugita, A., Matsui, T., Asano, R., Makabe, K., Yokoyama, T., Tanaka, Y.
PDB entry 9ipl: A tetrapyrrole binding domain variant of CoaR in closed conformation at 2.28 angstrom resolution
Classification: METAL BINDING PROTEIN
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-07-10
Authors: Liu, X.C.
PDB entry 9ipm: Hemichannel sub-structure of Cx36/GJD2 gap junction intercellular channel (FN conformation) in soybean polar lipid nanodiscs, treated with a 20-fold molar excess of carbenoxolone
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-07-11
Authors: Jang, H.S.
PDB entry 9ipn: Hemichannel sub-structure of Cx36/GJD2 gap junction intercellular channel (FN conformation) in soybean polar lipid nanodiscs, treated with a 10-fold molar excess of carbenoxolone and incubated shortly
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2024-07-11
Authors: Jang, H.S.
PDB entry 9ipo: Hemichannel sub-structure of Cx36/GJD2 gap junction intercellular channel (FN conformation) in soybean polar lipid nanodiscs, treated with a 10-fold molar excess of carbenoxolone
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2024-07-11
Authors: Jang, H.S.
PDB entry 9ipp: Crystal structure of MERS main protease in complex with carmofur
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-07-11
Authors: Guo, L., Zhou, X.L., Zeng, P., Li, W.W., Zhang, J., Li, J.
PDB entry 9ipr: Crystal structure of CTB10-M1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Cercospora sp. JNU001
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-07-11
Authors: Fu, K., Rao, Y.J.
PDB entry 9ipt: Crystal structure of a TetR family regulator AmvR from Acinetobacter baumannii with spermidine bound
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-07-11
Authors: Ma, J.M., Ge, H.H., Wang, N.
PDB entry 9ipu: cryo-EM structure of the RNF168(1-193)/UbcH5c-Ub ubiquitylation module bound to H1.0-K63-Ub3 modified chromatosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-07-11
Authors: Ai, H.S., Deng, Z.H., Liu, L.
PDB entry 9ipv: Structure of JR14a-C3aR-Gi-scFv16 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-07-11
Authors: Kim, J., Ko, S., Choi, H.-J.
PDB entry 9ipw: Crystal structure of VHL-EloB-EloC in complex with a fragment compound 7HC_5(D3)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-07-11
Authors: Lee, B.I., Kim, Y.
PDB entry 9ipy: Structure of JR14a-bound human C3aR
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-07-12
Authors: Kim, J., Ko, S., Choi, H.-J.
PDB entry 9iq3: AkaM,SnoaL-lile Protein
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. NPS-554
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-07-12
Authors: Zhang, B., Ma, X.X., Zhu, A., Ge, H.M.
PDB entry 9iq4: Crystal structure of African swine fever virus methyltransferase EP424R in complex with S-Adenosylhomocysteine
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-07-12
Authors: Wang, Z.X., Guo, F.L., Liu, Y.
PDB entry 9iq5: CatM, SnoaL-like protein
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptantibioticus cattleyicolor (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2024-07-12
Authors: Zhang, B., Zhu, A., Ma, X.X., Ge, H.M.
PDB entry 9iq7: SacM-homologous of AkaM
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharothrix syringae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-07-12
Authors: Zhang, B., Ge, H.M.
PDB entry 9iq8: Ankyrin-like protein, AnkB
Classification: SIGNALING PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-07-12
Authors: Sung, J.H., Park, H.H.
PDB entry 9iqa: structure of the oleate hydratase V206L-mutant from Staphylococcus aureus
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-07-12
Authors: Xue, S., Feng, T.
PDB entry 9iqb: Crystal structure of beta-glucosidase from Acetivibrio thermocellus
Classification: HYDROLASE
Source organism: Acetivibrio thermocellus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-07-12
Authors: Kamale, C., Bhaumik, P.
PDB entry 9iqc: Monooxygenase dependent on riboflavin with dCMP and FAD
Classification: HYDROLASE
Source organism: Phage #D
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-07-12
Authors: Yu, H., Lianrong, W.
PDB entry 9iqd: Apo-MicM,homologous of AkaM, SnoaL-like protein
Classification: BIOSYNTHETIC PROTEIN
Source organism: Micromonospora sp. HM134
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-07-12
Authors: Zhang, B., Ge, H.M.
PDB entry 9iqe: Cryo-EM structure of MsRv1273c/72c from Mycobacterium smegmatis in the ADP-bound IFasym-3 (peptidisc) state (ATP 37degrees C treated)
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-07-12
Authors: Lan, Y., Li, J.
PDB entry 9iqf: Cryo-EM structure of MsRv1273c/72c from Mycobacterium smegmatis in the ADP-bound IFasym-3 (peptidisc) state (ADP 4degrees C treated)
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2024-07-12
Authors: Lan, Y., Li, J.
PDB entry 9iqg: Cryo-EM structure of MsRv1273c/72c from Mycobacterium smegmatis in the ATP|ADP+Vi-bound Occ (Vi) state
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-07-12
Authors: Lan, Y., Yu, J., Li, J.
PDB entry 9iqh: Crystal structure of sulfhydrylase
Classification: LYASE
Source organism: Acidithiobacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-07-12
Authors: Li, X.J., Chen, L.X., Lin, J.Q.
PDB entry 9iqi: Structure of oleate hydratase mutant - V135A/L212V from Staphylococcus aureus in the complex with FAD
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2024-07-12
Authors: Xue, S., Feng, T.
PDB entry 9iqj: Structure of oleate hydratase mutant L151V from Staphylococcus aureus in the complex with linoleic acid
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-07-12
Authors: Xue, S., Feng, T.
PDB entry 9iqk: SacM in complex with LC3
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharothrix syringae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-07-12
Authors: Zhang, B., Ge, H.M.
PDB entry 9iql: SacM in complex with L6S
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharothrix syringae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-07-12
Authors: Zhang, B., Ge, H.M.
PDB entry 9iqm: CatM-L6S, a SnoaL-like protein in complex with substrate mimic L6S
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptantibioticus cattleyicolor (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-07-12
Authors: Zhang, B., Ge, H.M.
PDB entry 9iqn: CatM-W86A-L6R, a SnoaL-like protein in complex with substrate mimic L6R
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptantibioticus cattleyicolor (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-07-12
Authors: Zhang, B., Ge, H.M.
PDB entry 9iqo: Cryo-EM structure of the Rubisco from thermophilic purple bacterial Rubisco
Classification: PLANT PROTEIN
Source organism: Thermochromatium tepidum ATCC 43061
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.55 Å
Deposited: 2024-07-13
Authors: Chang, S.H., Chen, J.H.
PDB entry 9iqp: Crystal structure of the Wuhan SARS-CoV-2 Spike RBD (319-541) complexed with 1p1B10 nanobody
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Camelus bactrianus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-07-13
Authors: Sluchanko, N.N., Matyuta, I.O., Dronova, E.A., Favorskaya, I.A., Esmagambetov, I.B., Shcheblyakov, D.V., Logunov, D.Y., Gintsburg, A.L., Popov, V.O., Boyko, K.M.
PDB entry 9iqq: Crystal structure of PKM2 in complex with a natural activator
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-07-13
Authors: Chen, T.J., Wang, W.C.
PDB entry 9iqr: Cryo-EM structure of MT3-alpha2AAR
Classification: MEMBRANE PROTEIN
Source organism: Dendroaspis angusticeps; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-07-13
Authors: Zhong, Y.X., Tao, H.H., Tao, Y.Y.
PDB entry 9iqs: Cryo-EM structure of MT3-Muscarinic acetylcholine receptor 4
Classification: MEMBRANE PROTEIN
Source organism: Dendroaspis angusticeps; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-07-13
Authors: Zhong, Y.X., Tao, H.H., Tao, Y.Y.
PDB entry 9iqt: structure of niacin-HCA2-Gi
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-07-13
Authors: Liu, Y., Zhou, Z.
PDB entry 9iqu: phage HY126 dCMP hydroxylase-AfhB with sustrate dCMP
Classification: HYDROLASE
Source organism: Phage #D
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-07-13
Authors: Yu, H., Lianrong, W.
PDB entry 9iqv: Cryo-EM structure of MT3-alpha1AAR
Classification: MEMBRANE PROTEIN
Source organism: Dendroaspis angusticeps; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-07-13
Authors: Zhong, Y.X., Tao, H.H., Tao, Y.Y.
PDB entry 9iqw: phage HY126 encoded D-arabinose 1,5-diphosphate phosphatase AfhF
Classification: VIRAL PROTEIN
Source organism: Phage #D
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-07-13
Authors: Yu, H., Lianrong, W.
PDB entry 9iqx: Cryo-EM structure of the human TRPV4-RhoA in complex with AH001
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-07-13
Authors: Yuan, Z., Ruan, S.S., Li, S.L.
PDB entry 9iqy: Cryo-EM structure of human TRPV4 intracellular domain in complex with GTPase RhoA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-07-13
Authors: Yuan, Z., Ruan, S.S., Li, S.L.
PDB entry 9iqz: phage HY126 glycosyltransferase
Classification: TRANSFERASE
Source organism: Phage #D
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-07-13
Authors: Yu, H.
PDB entry 9ir0: phage HY126 glycosyltransferase with UDP
Classification: TRANSFERASE
Source organism: Phage #D
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2024-07-13
Authors: Yu, H., Lianrong, W.
PDB entry 9ir1: Crystal structure of CTB10-M40BpA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Cercospora sp. JNU001
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-07-13
Authors: Fu, K., Rao, Y.J.
PDB entry 9ir2: phage HY126 hydroxylase AfhB with cofactor FMN and substrate dCMP
Classification: HYDROLASE
Source organism: Phage #D
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2024-07-13
Authors: Yu, H., Lianrong, W.
PDB entry 9ir3: Cryo-EM structure of Nipah virus L-P polymerase complex
Classification: TRANSCRIPTION
Source organism: Nipah virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-07-13
Authors: Shi, Y., Peng, Q.
PDB entry 9ir4: Cryo-EM structure of Nipah virus L-P (H1165Y) polymerase complex
Classification: TRANSCRIPTION
Source organism: Nipah virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-07-14
Authors: Shi, Y., Peng, Q.
PDB entry 9ir5: Crystal structure of apo-form UDP-N-acetylmuramic Acid L-alanine ligase (MurC) from Roseburia faecis
Classification: LIGASE
Source organism: Roseburia faecis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-07-14
Authors: Wang, Y.X., Du, Y.H.
PDB entry 9ir6: Crystal structure of UDP-N-acetylmuramic Acid L-alanine ligase (MurC) from Roseburia faecis in complex with UNAM
Classification: LIGASE
Source organism: Roseburia faecis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-07-14
Authors: Wang, Y.X., Du, Y.H.
PDB entry 9ir8: CCoV-HuPn-2018 3CL protease (3CLpro) in complex with compound 6
Classification: VIRAL PROTEIN
Source organism: Canine coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-07-15
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9ir9: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 6
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-07-15
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9ira: IBV 3CL protease (3CLpro) in complex with compound 6
Classification: VIRAL PROTEIN
Source organism: Avian infectious bronchitis virus (strain Beaudette)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-07-15
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9irb: CryoEM structure of hSLC15A4+Fab107
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-07-15
Authors: Zhu, Y.L., Zhang, Q.X., Gao, P.
PDB entry 9irc: CyroEM structure of hSLC15A4+TASL+Fab235
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2024-07-15
Authors: Zhu, Y.L., Zhang, Q.X., Gao, P.
PDB entry 9ird: Cryo-EM structure of BTN2A1-BTN3A1-BTN3A2 mutant (BTN3A1 H381R, BTN2A1 R477A/T510A) in complex with Vgamma9-Vdelta2 TCR (G115 genotype)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-07-15
Authors: Xin, W., Huang, B., Su, Q., Zhou, Q.
PDB entry 9ire: CRYSTAL STRUCTURE OF Bacillus cereus FERRIC UPTAKE REGULATOR
Classification: METAL BINDING PROTEIN
Source organism: Bacillus cereus VD154
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-07-15
Authors: Gabdulkhakov, A.G., Tishchenko, T.V., Kostareva, O.S.
PDB entry 9irf: Cryo-EM Structure of csy1-4 with crRNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Pectobacterium atrosepticum SCRI1043
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-07-15
Authors: Gao, X., Cui, S., Zhu, H., Zhu, K., Shang, K.
PDB entry 9irg: Cryo-EM Structure of RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Pectobacterium atrosepticum SCRI1043; Thiocystis violascens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.59 Å
Deposited: 2024-07-16
Authors: Gao, X., Cui, S., Zhu, H., Zhu, K., Shang, K.
PDB entry 9iri: Cryo-EM Structure of D-RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Pectobacterium atrosepticum SCRI1043; Thiocystis violascens DSM 198
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-07-16
Authors: Gao, X., Cui, S., Zhu, H., Zhu, K., Shang, K.
PDB entry 9irj: X-ray structure of PSmOrange3 (trigonal form)
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-07-16
Authors: Samygina, V.R., Subach, O.M., Vlaskina, A.V., Nikolaeva, A.Y., Subach, F.V.
PDB entry 9irk: Cryo-EM structure of PhyB(Y276H,1-908)-PIF6beta complex
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-07-16
Authors: Jia, H.L., Guan, Z.Y., Ding, J.Y., Wang, X.Y., Ma, L., Yin, P.
PDB entry 9irl: Crystal structure analysis of LW-Srci-2o in complex with c-Src.
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.031 Å
Deposited: 2024-07-16
Authors: Xu, D., Huiming, Z., Hongchan, H.
PDB entry 9irm: Structure of ClpP from Staphylococcus aureus in complex with ZG283
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2024-07-16
Authors: Wei, B.Y., Wang, P.Y., Zhang, T., Yang, C.-G.
PDB entry 9iro: Crystal structure of SeUGI and SAUDG
Classification: DNA BINDING PROTEIN/INHIBITOR
Source organism: Staphylococcus aureus; Staphylococcus epidermidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-07-16
Authors: Wang, H.C., Ko, T.P.
PDB entry 9irp: Structure of ClpP from Staphylococcus aureus in complex with ZG297
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2024-07-16
Authors: Wei, B.Y., Wang, P.Y., Zhang, T., Yang, C.-G.
PDB entry 9irq: Alginate lyase (Microbulbifer sp. ALW1)
Classification: HYDROLASE
Source organism: Microbulbifer sp. (strain ALW1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-07-16
Authors: Zhu, Y.B.
PDB entry 9irs: Cryo-EM structure of the TCR-OKT3 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-07-16
Authors: Li, X., Zhu, Y., Huang, Z.
PDB entry 9iru: Cryo-em structure of TCR-4B1 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-07-16
Authors: Li, X., Zhu, Y., Huang, Z.
PDB entry 9irv: MultiBody Refinement of dimeric DARPin and its bound GFP on a symmetric scaffold
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aequorea victoria; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-07-16
Authors: Lu, X., Yan, M., Zhang, H.M., Hao, Q.
PDB entry 9irw: Structure of human URAT1 bound with urate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-07-16
Authors: Guo, W.J., Wei, M., Chen, L.
PDB entry 9irx: Structure of human URAT1 bound with benzbromarone
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-07-16
Authors: Guo, W.J., Wei, M., Chen, L.
PDB entry 9iry: Structure of human URAT1 bound with verinurad
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-07-16
Authors: Guo, W.J., Wei, M., Chen, L.
PDB entry 9irz: Crystal structure of YhaJ DNA-binding domain
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-07-16
Authors: Kim, M., Kang, R., Ryu, S.E.
PDB entry 9is0: Ultra-high temperature sterilization-treated beta-conglycinin
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 3.23 Å
Deposited: 2024-07-16
Authors: Zhang, T., Li, J.Y.
PDB entry 9is1: Pasteurization-treated beta-conglycinin
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-07-16
Authors: Zhang, T., Li, J.Y.
PDB entry 9is2: Unheat-treated beta-conglycinin
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2024-07-16
Authors: Zhang, T., Li, J.Y.
PDB entry 9is4: Cryo-EM structure of a TEF30-associated intermediate C2S-type PSII-LHCII supercomplex from Chlamydomonas reinhardtii
Classification: PHOTOSYNTHESIS
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-07-16
Authors: Wang, Y., Wang, C., Li, A., Liu, Z.
PDB entry 9is6: CryoEM structure of Plant-Complex-C-5b
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-07-17
Authors: Wang, J.Z., Zhao, J., Li, X.H., Xu, B.
PDB entry 9is7: Paracandidimonas lactea CP group II intron 2S state
Classification: RNA
Source organism: Paracandidimonas lactea
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-07-17
Authors: Wang, L., Xie, J.H., Zhang, C., Zou, J., Huang, Z., Shang, S., Chen, X., Yang, Y., Liu, J., Dong, H., Huang, D., Su, Z.
PDB entry 9is8: Cryo-EM structure of AKT1-AtKC1(G315D)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-07-17
Authors: Dongliang, L., Zijie, Z., Yannan, Q., Yuyue, T., Huaizong, S.
PDB entry 9is9: human MTHFD2 in complex with LY374571
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-07-17
Authors: Lee, L.C., Wu, S.Y.
PDB entry 9isa: Dimeric amylosucrase from Deinococcus geothermalis
Classification: CARBOHYDRATE
Source organism: Deinococcus geothermalis (strain DSM 11300 / CIP 105573 / AG-3a)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-07-17
Authors: Kim, D.S., Park, J.H., Seo, D.
PDB entry 9isb: Ligand bound AGD of enzyme
Classification: TRANSFERASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2024-07-17
Authors: Park, J.B., Roh, S.H.
PDB entry 9isc: Human MTHFD2 in complex with compound 16a
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2024-07-17
Authors: Lee, L.C., Wu, S.Y.
PDB entry 9isd: Crystal structure of human secretory glutaminyl cyclase in complex with the inhibitor N-(1H-benzo[d]imidazol-5-yl)-1-phenylmethanesulfonamide (compound 5)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.367 Å
Deposited: 2024-07-17
Authors: Li, G.-B., Yu, J.-L., Zhou, C., Ning, X.-L., Mou, J., Wu, J.-W., Meng, F.-B.
PDB entry 9ise: Human MTHFD1 in complex with LY374571
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-07-17
Authors: Lee, L.C., Wu, S.Y.
PDB entry 9isf: Crystal structure of nanobody 14 in complex with HSV-2 gD
Classification: ANTIVIRAL PROTEIN
Source organism: Human alphaherpesvirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.72 Å
Deposited: 2024-07-17
Authors: Hu, J., Jin, T.C.
PDB entry 9isg: Structure of rat TRPV1 in complex with PSFL426-S5
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-07-17
Authors: Chen, X., Yu, Y.
PDB entry 9ish: Crystal structure of nanobody 32 in complex with HSV-2 gD
Classification: ANTIVIRAL PROTEIN
Source organism: Human alphaherpesvirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2024-07-17
Authors: Hu, J., Jin, T.C.
PDB entry 9isi: Structure of human C3aR in apo state
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-07-17
Authors: Kim, J., Ko, S., Choi, H.-J.
PDB entry 9isj: Crystal structure of Klebsiella pneumoniae ZapA
Classification: CELL CYCLE
Source organism: Klebsiella pneumoniae (strain 342)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-07-18
Authors: Fujita, J., Hibino, K., Kagoshima, G., Kamimura, N., Kato, Y., Uehara, R., Namba, K., Uchihashi, T., Matsumura, H.
PDB entry 9isk: Cryo-EM structure of KpFtsZ-ZapA complex
Classification: CELL CYCLE
Source organism: Klebsiella pneumoniae 342; Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-07-18
Authors: Fujita, J., Hibino, K., Kagoshima, G., Kamimura, N., Kato, Y., Uehara, R., Namba, K., Uchihashi, T., Matsumura, H.
PDB entry 9isl: Human MTHFD1 in complex with compound 16e
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2024-07-18
Authors: Lee, L.C., Wu, S.Y.
PDB entry 9ism: Cryo-EM structure of MxaF/MxaJ complex
Classification: PROTEIN BINDING
Source organism: Methylorubrum extorquens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-07-18
Authors: Sun, J.Q., Gao, F.
PDB entry 9isn: Cryo-EM structure of Streptomyces coelicolor sigma factor shbA transcription initiation complex
Classification: GENE REGULATION/DNA
Source organism: Streptomyces coelicolor A3(2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-07-18
Authors: Liu, G., Zheng, J.
PDB entry 9iso: Cryo-EM structure of MxaF/MxaJ/PQQ complex
Classification: PROTEIN BINDING
Source organism: Methylorubrum extorquens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-07-18
Authors: Sun, J.Q., Gao, F.
PDB entry 9isp: DUF2436 domain which is frequently found in virulence proteins from Porphyromonas gingivalis
Classification: UNKNOWN FUNCTION
Source organism: Porphyromonas gingivalis W83
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-07-18
Authors: Kim, B., Hwang, J., Do, H., Lee, J.H.
PDB entry 9isq: Apo-state E.coli PatZ
Classification: TRANSFERASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2024-07-18
Authors: Park, J.B., Roh, S.H.
PDB entry 9isr: Human MTHFD1 in complex with compound 16g
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-07-18
Authors: Lee, L.C., Wu, S.Y.