LiteFold/PDB huggingface dataset:
PDB entry 3vje: Crystal structure of the Y248A mutant of C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus in complex with zaragozic acid A
Classification: Transferase/Transferase inhibitor
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2011-10-14
Authors: Liu, C.I., Jeng, W.Y., Chang, W.J., Wang, A.H.J.
PDB entry 3vjf: Crystal structure of de novo 4-helix bundle protein WA20
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-10-18
Authors: Arai, R., Kimura, A., Kobayashi, N., Matsuo, K., Sato, T., Wang, A.F., Platt, J.M., Bradley, L.H., Hecht, M.H.
PDB entry 3vjh: Human PPAR GAMMA ligand binding domain in complex with JKPL35
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2011-10-20
Authors: Tomioka, D., Kuwabara, N., Hashimoto, H., Sato, M., Shimizu, T.
PDB entry 3vji: Human PPAR gamma ligand binding domain in complex with JKPL53
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2011-10-20
Authors: Tomioka, D., Kuwabara, N., Hashimoto, H., Sato, M., Shimizu, T.
PDB entry 3vjj: Crystal Structure Analysis of the P9-1
Classification: VIRAL PROTEIN
Source organism: Rice black streaked dwarf virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-10-24
Authors: Akita, F., Higashiura, A., Suzuki, M., Tsukihara, T., Nakagawa, A., Omura, T.
PDB entry 3vjk: Crystal structure of human depiptidyl peptidase IV (DPP-4) in complex with MP-513
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2011-10-24
Authors: Akahoshi, F., Kishida, H., Miyaguchi, I., Yoshida, T., Ishii, S.
PDB entry 3vjl: Crystal structure of human depiptidyl peptidase IV (DPP-4) in complex with a prolylthiazolidine inhibitor #2
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.393 Å
Deposited: 2011-10-24
Authors: Akahoshi, F., Kishida, H., Miyaguchi, I., Yoshida, T., Ishii, S.
PDB entry 3vjm: Crystal structure of human depiptidyl peptidase IV (DPP-4) in complex with a prolylthiazolidine inhibitor #1
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-10-24
Authors: Akahoshi, F., Kishida, H., Miyaguchi, I., Yoshida, T., Ishii, S.
PDB entry 3vjn: Crystal structure of the mutated EGFR kinase domain (G719S/T790M) in complex with AMPPNP.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2011-10-27
Authors: Yoshikawa, S., Kukimoto-Niino, M., Shirouzu, M., Semba, K., Yamamoto, T., Yokoyama, S.
PDB entry 3vjo: Crystal structure of the wild-type EGFR kinase domain in complex with AMPPNP.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2011-10-27
Authors: Yoshikawa, S., Kukimoto-Niino, M., Shirouzu, M., Semba, K., Yamamoto, T., Yokoyama, S.
PDB entry 3vjp: Orthorhombic Crystal Structure of Salmonella FlgA in closed form
Classification: CHAPERONE
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-10-27
Authors: Matsunami, H., Samatey, F.A., Namba, K.
PDB entry 3vjq: Recombinant thaumatin at pH 8.0 with hydrogen atoms
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2011-10-27
Authors: Masuda, T., Mikami, B., Tani, F.
PDB entry 3vjr: Crystal structure of Peptidyl-tRNA hydrolase from Escherichia coli in complex with the CCA-acceptor-T[PSI]C domain of tRNA
Classification: hydrolase/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2011-10-28
Authors: Ito, K., Murakami, R., Mochizuki, M., Qi, H., Shimizu, Y., Miura, K.I., Ueda, T., Uchiumi, T.
PDB entry 3vjs: Vitamin D receptor complex with a carborane compound
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2011-10-31
Authors: Fujii, S., Masuno, M., Kagechika, H., Nakabayashi, M., Ito, N.
PDB entry 3vjt: Vitamin D receptor complex with a carborane compound
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-10-31
Authors: Fujii, S., Masuno, M., Kagechika, H., Nakabayashi, M., Ito, N.
PDB entry 3vjz: Crystal structure of the DNA mimic protein DMP19
Classification: GENE REGULATION
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-11-01
Authors: Wang, H.-C., Ko, T.-P., Wang, A.H.-J.
PDB entry 3vk0: Crystal Structure of hypothetical transcription factor NHTF from Neisseria
Classification: DNA BINDING PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2011-11-01
Authors: Wang, H.-C., Ko, T.-P., Wu, M.-L., Wu, H.-J., Ku, S.-C., Wang, A.H.-J.
PDB entry 3vk1: Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5
Classification: FLUORESCENT PROTEIN
Source organism: Montipora efflorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-11-07
Authors: Battad, J.M., Traore, D.A.K., Wilce, M., Byres, M., Rossjohn, J., Devenish, R.J., Prescott, M.
PDB entry 3vk2: Crystal Structure of L-Methionine gamma-Lyase from Pseudomonas putida C116H Mutant.
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2011-11-07
Authors: Fukumoto, M., Kudou, D., Murano, S., Shiba, T., Sato, D., Tamura, T., Harada, S., Inagaki, K.
PDB entry 3vk3: Crystal Structure of L-Methionine gamma-Lyase from Pseudomonas putida C116H Mutant Complexed with L-methionine
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-11-07
Authors: Fukumoto, M., Kudou, D., Murano, S., Shiba, T., Sato, D., Tamura, T., Harada, S., Inagaki, K.
PDB entry 3vk4: Crystal Structure of L-Methionine gamma-Lyase from Pseudomonas putida C116H Mutant complexed with L-homocysteine
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2011-11-07
Authors: Fukumoto, M., Kudou, D., Murano, S., Shiba, T., Sato, D., Tamura, T., Harada, S., Inagaki, K.
PDB entry 3vk5: Crystal structure of MoeO5 in complex with its product FPG
Classification: TRANSFERASE
Source organism: Streptomyces ghanaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2011-11-08
Authors: Ren, F., Ko, T.-P., Huang, C.-H., Guo, R.-T.
PDB entry 3vk6: Crystal structure of a phosphotyrosine binding domain
Classification: LIGASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-11-09
Authors: Sivaraman, J., Mukherjee, M.
PDB entry 3vk7: Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil
Classification: HYDROLASE/DNA
Source organism: Acanthamoeba polyphaga mimivirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-11-10
Authors: Imamura, K., Averill, A., Wallace, S.S., Doublie, S.
PDB entry 3vk8: Crystal structure of DNA-glycosylase bound to DNA containing Thymine glycol
Classification: HYDROLASE/DNA
Source organism: Acanthamoeba polyphaga mimivirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-11-10
Authors: Imamura, K., Averill, A., Wallace, S.S., Doublie, S.
PDB entry 3vk9: Crystal structure of delta-class glutathione transferase from silkmoth
Classification: TRANSFERASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2011-11-10
Authors: Kakuta, Y., Usuda, K., Higashiura, A., Suzuki, M., Nakagawa, A., Kimura, M., Yamamoto, K.
PDB entry 3vka: Crystal structure of MoeO5 soaked for 3 hours in FsPP
Classification: TRANSFERASE
Source organism: Streptomyces ghanaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2011-11-11
Authors: Ren, F., Ko, T.-P., Huang, C.-H., Guo, R.-T.
PDB entry 3vkb: Crystal structure of MoeO5 soaked with FsPP overnight
Classification: TRANSFERASE
Source organism: Streptomyces ghanaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-11-11
Authors: Ren, F., Ko, T.-P., Huang, C.-H., Guo, R.-T.
PDB entry 3vkc: Crystal structure of MoeO5 soaked with pyrophosphate
Classification: TRANSFERASE
Source organism: Streptomyces ghanaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2011-11-12
Authors: Ren, F., Ko, T.-P., Huang, C.-H., Guo, R.-T.
PDB entry 3vkd: Crystal structure of MoeO5 soaked with 3-phosphoglycerate
Classification: TRANSFERASE
Source organism: Streptomyces ghanaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2011-11-12
Authors: Ren, F., Ko, T.-P., Huang, C.-H., Guo, R.-T.
PDB entry 3vke: Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2011-11-15
Authors: Traore, D.A.K., Wilce, M.C.J., Wilce, J.A.
PDB entry 3vkf: Crystal Structure of Neurexin 1beta/Neuroligin 1 complex
Classification: CELL ADHESION
Source organism: Bos taurus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2011-11-15
Authors: Tanaka, H., Miyazaki, N., Nogi, T., Iwasaki, K., Takagi, J.
PDB entry 3vkg: X-ray structure of an MTBD truncation mutant of dynein motor domain
Classification: MOTOR PROTEIN
Source organism: Dictyostelium discoideum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2011-11-16
Authors: Kon, T., Oyama, T., Shimo-Kon, R., Suto, K., Kurisu, G.
PDB entry 3vkh: X-ray structure of a functional full-length dynein motor domain
Classification: MOTOR PROTEIN
Source organism: Dictyostelium discoideum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2011-11-16
Authors: Kon, T., Oyama, T., Shimo-Kon, R., Suto, K., Kurisu, G.
PDB entry 3vki: Monoclinic Crystal Structure of Salmonella FlgA in closed form
Classification: CHAPERONE
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2011-11-16
Authors: Matsunami, H., Samatey, F.A., Namba, K.
PDB entry 3vkj: Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase, octameric form
Classification: ISOMERASE
Source organism: Sulfolobus shibatae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-11-17
Authors: Nakatani, H., Goda, S., Unno, H., Nagai, T., Yoshimura, T., Hemmi, H.
PDB entry 3vkk: Crystal Structure Of The Covalent Intermediate Of Human Cytosolic Beta-Glucosidase-mannose complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-11-17
Authors: Noguchi, J., Hayashi, Y., Okino, N., Ito, M., Kimura, M., Kakuta, Y.
PDB entry 3vkl: Protease-resistant mutant form of human Galectin-8 in complex with two lactose molecules
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2011-11-18
Authors: Kamitori, S., Yoshida, H.
PDB entry 3vkm: Protease-resistant mutant form of Human Galectin-8 in complex with sialyllactose and lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2011-11-18
Authors: Yoshida, H., Yamashita, S., Teraoka, M., Nakakita, S., Nishi, N., Kamitori, S.
PDB entry 3vkn: Galectin-8 N-terminal domain in free form
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2011-11-18
Authors: Kamitori, S., Yoshida, H.
PDB entry 3vko: Galectin-8 N-terminal domain in complex with sialyllactosamine
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2011-11-18
Authors: Kamitori, S., Yoshida, H.
PDB entry 3vkp: Assimilatory nitrite reductase (Nii3) - NO2 complex from tobbaco leaf analysed with low X-ray dose
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2011-11-20
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vkq: Assimilatory nitrite reductase (Nii3) - NO2 complex from tobbaco leaf analysed with middle X-ray dose
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2011-11-20
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vkr: Assimilatory nitrite reductase (Nii3) - NO2 complex from tobbaco leaf analysed with high X-ray dose
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2011-11-20
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vks: Assimilatory nitrite reductase (Nii3) - NO complex from tobbaco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2011-11-20
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vkt: Assimilatory nitrite reductase (Nii3) - NH2OH complex from tobbaco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2011-11-20
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vkw: Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus
Classification: TRANSFERASE
Source organism: Tomato mosaic virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-11-22
Authors: Nishikiori, M., Sugiyama, S., Xiang, H., Niiyama, M., Ishibashi, K., Inoue, T., Ishikawa, M., Matsumura, H., Katoh, E.
PDB entry 3vkx: Structure of PCNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-11-26
Authors: Hashimoto, H., Hishiki, A., Shimizu, T., Sato, M., Punchihewa, C., Connelly, M., Actis, M., Waddell, B., Pagala, V., Fujii, N.
PDB entry 3vkz: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at atmospheric pressure
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2011-11-28
Authors: Nagae, T., Watanabe, N.
PDB entry 3vl1: Crystal structure of yeast Rpn14
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2011-11-28
Authors: Kim, S., Nishide, A., Saeki, Y., Takagi, K., Tanaka, K., Kato, K., Mizushima, T.
PDB entry 3vl2: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 160 MPa
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2011-11-29
Authors: Nagae, T., Watanabe, N.
PDB entry 3vl3: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 340 MPa
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-11-29
Authors: Nagae, T., Watanabe, N.
PDB entry 3vl4: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 410 MPa
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2011-11-29
Authors: Nagae, T., Watanabe, N.
PDB entry 3vl6: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 580 MPa
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2011-11-29
Authors: Nagae, T., Watanabe, N.
PDB entry 3vl7: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 650 MPa
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-11-29
Authors: Nagae, T., Watanabe, N.
PDB entry 3vl8: Crystal structure of XEG
Classification: HYDROLASE
Source organism: Aspergillus aculeatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-11-30
Authors: Yoshizawa, T., Shimizu, T., Hirano, H., Sato, M., Hashimoto, H.
PDB entry 3vl9: Crystal structure of xeg-xyloglucan
Classification: HYDROLASE
Source organism: Aspergillus aculeatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2011-11-30
Authors: Yoshizawa, T., Shimizu, T., Hirano, H., Sato, M., Hashimoto, H.
PDB entry 3vla: Crystal structure of edgp
Classification: PLANT PROTEIN
Source organism: Daucus carota
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2011-11-30
Authors: Yoshizawa, T., Shimizu, T., Hirano, H., Sato, M., Hashimoto, H.
PDB entry 3vlb: Crystal structure of xeg-edgp
Classification: PLANT PROTEIN/HYDROLASE
Source organism: Aspergillus aculeatus; Daucus carota
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-11-30
Authors: Yoshizawa, T., Shimizu, T., Hirano, H., Sato, M., Hashimoto, H.
PDB entry 3vlc: Crystal structure of S. cerevisiae Get3 in the semi open conformation in complex with Get1 cytosolic domain at 4.5 angstrom resolution
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2011-11-30
Authors: Kubota, K., Yamagata, A., Fukai, S.
PDB entry 3vld: Crystal structure of yeast proteasome interacting protein
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2011-12-01
Authors: Takagi, K., Kim, S., Kato, K., Tanaka, K., Saeki, Y., Mizushima, T.
PDB entry 3vle: Crystal structure of yeast proteasome interacting protein
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2011-12-01
Authors: Takagi, K., Kim, S., Kato, K., Tanaka, K., Saeki, Y., Mizushima, T.
PDB entry 3vlf: Crystal structure of yeast proteasome interacting protein
Classification: CHAPERONE/PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2011-12-01
Authors: Takagi, K., Kim, S., Kato, K., Tanaka, K., Saeki, Y., Mizushima, T.
PDB entry 3vlg: Crystal structure of the W150A mutant LOX-1 CTLD showing impaired OxLDL binding
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2011-12-01
Authors: Nakano, S., Sugihara, M., Yamada, R., Katayanagi, K., Tate, S.
PDB entry 3vlh: Crystal Structure Analysis of the Arg409Leu Variants of KatG from HALOARCULA MARISMORTUI
Classification: OXIDOREDUCTASE
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2011-12-01
Authors: Sato, T., Higuchi, W., Yoshimatsu, K., Fujiwara, T.
PDB entry 3vli: Crystal Structure Analysis of the Cyanide Arg409Leu Variant KatG from HALOARCULA MARISMORTUI
Classification: OXIDOREDUCTASE
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-12-01
Authors: Sato, T., Higuchi, W., Yoshimatsu, K., Fujiwara, T.
PDB entry 3vlj: Crystal Structure Analysis of the Cyanide Arg409Leu Variant Complexes with o-Dianisidine in KatG from HALOARCULA MARISMORTUI
Classification: OXIDOREDUCTASE
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-12-01
Authors: Sato, T., Higuchi, W., Yoshimatsu, K., Fujiwara, T.
PDB entry 3vlk: Crystal Structure Analysis of the Ser305Ala variant of KatG from Haloarcula marismortui
Classification: OXIDOREDUCTASE
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-12-01
Authors: Sato, T., Higuchi, W., Yoshimatsu, K., Fujiwara, T.
PDB entry 3vll: Crystal Structure Analysis of the Ser305Ala variant of KatG from HALOARCULA MARISMORTUI Complexes with Inhibitor SHA
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-12-01
Authors: Sato, T., Higuchi, W., Yoshimatsu, K., Fujiwara, T.
PDB entry 3vlm: Crystal Structure Analysis of the Met244Ala Variant of KatG from Haloarcula marismortui
Classification: OXIDOREDUCTASE
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2011-12-01
Authors: Sato, T., Ten-i, T., Higuchi, W., Yoshimatsu, K., Fujiwara, T.
PDB entry 3vln: Human Glutathione Transferase O1-1 C32S Mutant in Complex with Ascorbic Acid
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-12-02
Authors: Brock, J., Board, P.G., Oakley, A.J.
PDB entry 3vlu: Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate
Classification: SUGAR BINDING PROTEIN
Source organism: Sphingomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2011-12-05
Authors: Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3vlv: Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate
Classification: SUGAR BINDING PROTEIN
Source organism: Sphingomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2011-12-05
Authors: Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3vlw: Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Sphingomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-12-05
Authors: Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3vlx: Assimilatory nitrite reductase (Nii3) - N226K mutant - ligand free form from tobacco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2011-12-05
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vly: Assimilatory nitrite reductase (Nii3) - N226K mutant - SO3 partial complex from tobacco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2011-12-05
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vlz: Assimilatory nitrite reductase (Nii3) - N226K mutant - SO3 full complex from tobacco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2011-12-05
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vm0: Assimilatory nitrite reductase (Nii3) - N226K mutant - NO2 complex from tobacco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.695 Å
Deposited: 2011-12-05
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vm1: assimilatory nitrite reductase (Nii3) - N226K mutant - HCO3 complex from tobacco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2011-12-05
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3vm4: Cytochrome P450SP alpha (CYP152B1) in complex with (R)-ibuprophen
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2011-12-08
Authors: Fujishiro, T., Shoji, O., Nagano, S., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 3vm5: Recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris
Classification: HYDROLASE
Source organism: Oryzias latipes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2011-12-08
Authors: Mizutani, K., Toyoda, M., Mikami, B.
PDB entry 3vm6: Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate
Classification: ISOMERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2011-12-08
Authors: Nakamura, A., Fujihashi, M., Aono, R., Sato, T., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
PDB entry 3vm7: Structure of an Alpha-Amylase from Malbranchea cinnamomea
Classification: HYDROLASE
Source organism: Malbranchea cinnamomea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2011-12-09
Authors: Zhou, P., Hu, S.Q., Zhou, Y., Han, P., Yang, S.Q., Jiang, Z.Q.
PDB entry 3vm8: Crystal structure of the human APOBEC3C having HIV-1 Vif-binding interface
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-12-09
Authors: Kitamura, S., Suzuki, A., Watanabe, N., Iwatani, Y.
PDB entry 3vm9: Dimeric horse myoglobin
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2011-12-09
Authors: Nagao, S., Osuka, H., Yamada, T., Uni, T., Shomura, Y., Imai, K., Higuchi, Y., Hirota, S.
PDB entry 3vma: Crystal Structure of the Full-Length Transglycosylase PBP1b from Escherichia coli
Classification: TRANSFERASE, HYDROLASE/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.161 Å
Deposited: 2011-12-09
Authors: Huang, C.Y., Sung, M.T., Lai, Y.T., Chou, L.Y., Shih, H.W., Cheng, W.C., Wong, C.H., Ma, C.
PDB entry 3vmf: Archaeal protein
Classification: TRANSLATION
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2011-12-12
Authors: Kobayashi, K., Saito, K., Ishitani, R., Ito, K., Nureki, O.
PDB entry 3vmg: Reduced carbazole-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Janthinobacterium; Pseudomonas resinovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2011-12-12
Authors: Ashikawa, Y., Nojiri, H.
PDB entry 3vmh: Oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Janthinobacterium; Pseudomonas resinovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2011-12-12
Authors: Ashikawa, Y., Nojiri, H.
PDB entry 3vmi: Carbazole- and oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Janthinobacterium; Pseudomonas resinovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-12-12
Authors: Ashikawa, Y., Nojiri, H.
PDB entry 3vmj: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2011-12-13
Authors: Nagae, T., Watanabe, N.
PDB entry 3vmk: 3-isopropylmalate dehydrogenase from Shewanella benthica DB21 MT-2
Classification: OXIDOREDUCTASE
Source organism: Shewanella benthica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2011-12-13
Authors: Nagae, T., Watanabe, N.
PDB entry 3vml: Chimera 3-isopropylmalate dehydrogenase between Shewanella oneidensis MR-1 (O) and Shewanella benthica DB21 MT-2 (M) from N-terminal: 20% O middle 70% M residual 10% O
Classification: OXIDOREDUCTASE
Source organism: Shewanella benthica; Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2011-12-13
Authors: Nagae, T., Watanabe, N.
PDB entry 3vmm: Crystal structure of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis
Classification: LIGASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2011-12-14
Authors: Shomura, Y., Higuchi, Y.
PDB entry 3vmn: Crystal structure of dextranase from Streptococcus mutans
Classification: HYDROLASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2011-12-14
Authors: Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.
PDB entry 3vmo: Crystal structure of dextranase from Streptococcus mutans in complex with isomaltotriose
Classification: HYDROLASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-12-14
Authors: Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.
PDB entry 3vmp: Crystal structure of dextranase from Streptococcus mutans in complex with 4,5-epoxypentyl alpha-D-glucopyranoside
Classification: HYDROLASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2011-12-14
Authors: Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.
PDB entry 3vmq: Crystal structure of Staphylococcus aureus membrane-bound transglycosylase: Apoenzyme
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.518 Å
Deposited: 2011-12-15
Authors: Huang, C.Y., Shih, H.W., Lin, L.Y., Tien, Y.W., Cheng, T.J.R., Cheng, W.C., Wong, C.H., Ma, C.
PDB entry 3vmr: Crystal structure of Staphylococcus aureus membrane-bound transglycosylase in complex with moenomycin
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.688 Å
Deposited: 2011-12-15
Authors: Huang, C.Y., Shih, H.W., Lin, L.Y., Tien, Y.W., Cheng, T.J.R., Cheng, W.C., Wong, C.H., Ma, C.
PDB entry 3vms: Crystal structure of Staphylococcus aureus membrane-bound transglycosylase in complex with NBD-Lipid II
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.202 Å
Deposited: 2011-12-15
Authors: Huang, C.Y., Shih, H.W., Lin, L.Y., Tien, Y.W., Cheng, T.J.R., Cheng, W.C., Wong, C.H., Ma, C.
PDB entry 3vmt: Crystal structure of Staphylococcus aureus membrane-bound transglycosylase in complex with a Lipid II analog
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.299 Å
Deposited: 2011-12-15
Authors: Huang, C.Y., Shih, H.W., Lin, L.Y., Tien, Y.W., Cheng, T.J.R., Cheng, W.C., Wong, C.H., Ma, C.
PDB entry 3vmv: Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165
Classification: LYASE
Source organism: Bacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2011-12-16
Authors: Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y.
PDB entry 3vmw: Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate
Classification: LYASE
Source organism: Bacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-12-17
Authors: Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y.
PDB entry 3vmx: Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2011-12-19
Authors: Fujiwara, Y., Takeshita, K., Kobayashi, M., Okamura, Y., Nakagawa, A.
PDB entry 3vmy: Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (REDUCTION/DTT)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2011-12-19
Authors: Fujiwara, Y., Takeshita, K., Kobayashi, M., Okamura, Y., Nakagawa, A.
PDB entry 3vmz: Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (oxidation/H2O2)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2011-12-19
Authors: Fujiwara, Y., Takeshita, K., Kobayashi, M., Okamura, Y., Nakagawa, A.
PDB entry 3vn0: Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (mutation/C245S)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2011-12-19
Authors: Fujiwara, Y., Takeshita, K., Kobayashi, M., Okamura, Y., Nakagawa, A.
PDB entry 3vn2: Crystal Structure of PPARgamma complexed with Telmisartan
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2011-12-21
Authors: Amano, Y.
PDB entry 3vn3: Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix
Classification: ANTIFREEZE PROTEIN
Source organism: Typhula ishikariensis
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2011-12-21
Authors: Kondo, H., Xiao, N., Hanada, Y., Sugimoto, H., Hoshino, T., Garnham, C.P., Davies, P.L., Tsuda, S.
PDB entry 3vn4: Crystal structure of the exosite-containing fragment of human ADAMTS13 (P475S mutant)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2011-12-21
Authors: Nakayama, D., Akiyama, M., Takeda, S., Kokame, K., Takagi, J., Miyata, T.
PDB entry 3vn5: Crystal structure of Aquifex aeolicus RNase H3
Classification: HYDROLASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2011-12-22
Authors: Jongruja, N., You, D.J., Eiko, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3vn9: Rifined Crystal structure of non-phosphorylated MAP2K6 in a putative auto-inhibition state
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-01-05
Authors: Kinoshita, T., Matsuzaka, H., Nakai, R., Kirii, Y., Yokota, K., Tada, T., Matsumoto, T.
PDB entry 3vna: Structural insights into small RNA sorting and mRNA binding by Arabidopsis Ago Mid domains
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-01-11
Authors: Yuan, Y.A., Zha, X.
PDB entry 3vnb: Structural insights into small RNA sorting and mRNA binding by Arabidopsis Ago domains
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-01-11
Authors: Yuan, Y.A., Zha, X.
PDB entry 3vnc: Crystal Structure of TIP-alpha N25 from Helicobacter Pylori in its natural dimeric form
Classification: DNA BINDING PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-01-11
Authors: Gao, M., Li, D., Hu, Y., Zou, Q., Wang, D.-C.
PDB entry 3vnd: Crystal structure of tryptophan synthase alpha-subunit from the psychrophile Shewanella frigidimarina K14-2
Classification: LYASE
Source organism: Shewanella frigidimarina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-01-12
Authors: Mitsuya, D., Tanaka, S., Matsumura, H., Takano, K., Urano, N., Ishida, M.
PDB entry 3vne: Structure of the ebolavirus protein VP24 from Sudan
Classification: VIRAL PROTEIN
Source organism: Sudan ebolavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-01-12
Authors: Zhang, A.P.P.
PDB entry 3vnf: Structure of the ebolavirus protein VP24 from Sudan
Classification: VIRAL PROTEIN
Source organism: Sudan ebolavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-01-12
Authors: Zhang, A.P.P.
PDB entry 3vng: Crystal Structure of Keap1 in Complex with Synthetic Small Molecular based on a co-crystallization
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-01-12
Authors: Kunishima, N., Tanaka, T., Satoh, M., Saburi, H.
PDB entry 3vnh: Crystal Structure of Keap1 Soaked with Synthetic Small Molecular
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-01-12
Authors: Kunishima, N., Tanaka, T., Satoh, M., Saburi, H.
PDB entry 3vni: Crystal structures of D-Psicose 3-epimerase from Clostridium cellulolyticum H10 and its complex with ketohexose sugars
Classification: ISOMERASE
Source organism: Clostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2012-01-16
Authors: Chan, H.C., Zhu, Y., Hu, Y., Ko, T.P., Huang, C.H., Ren, F., Chen, C.C., Guo, R.T., Sun, Y.
PDB entry 3vnj: Crystal structures of D-Psicose 3-epimerase with D-psicose from Clostridium cellulolyticum H10
Classification: ISOMERASE
Source organism: Clostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2012-01-16
Authors: Chan, H.C., Zhu, Y., Hu, Y., Ko, T.P., Huang, C.H., Ren, F., Chen, C.C., Guo, R.T., Sun, Y.
PDB entry 3vnk: Crystal structures of D-Psicose 3-epimerase with D-fructose from Clostridium cellulolyticum H10
Classification: ISOMERASE
Source organism: Clostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2012-01-16
Authors: Chan, H.C., Zhu, Y., Hu, Y., Ko, T.P., Huang, C.H., Ren, F., Chen, C.C., Guo, R.T., Sun, Y.
PDB entry 3vnl: Crystal structures of D-Psicose 3-epimerase with D-tagatose from Clostridium cellulolyticum H10
Classification: ISOMERASE
Source organism: Clostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2012-01-16
Authors: Chan, H.C., Zhu, Y., Hu, Y., Ko, T.P., Huang, C.H., Ren, F., Chen, C.C., Guo, R.T., Sun, Y.
PDB entry 3vnm: Crystal structures of D-Psicose 3-epimerase with D-sorbose from Clostridium cellulolyticum H10
Classification: ISOMERASE
Source organism: Clostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2012-01-17
Authors: Chan, H.C., Zhu, Y., Hu, Y., Ko, T.P., Huang, C.H., Ren, F., Chen, C.C., Guo, R.T., Sun, Y.
PDB entry 3vnn: Crystal Structure of a sub-domain of the nucleotidyltransferase (adenylation) domain of human DNA ligase IV
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.903 Å
Deposited: 2012-01-17
Authors: Ochi, T., Wu, Q., Chirgadze, D.Y., Grossmann, J.G., Bolanos-Garcia, V.M., Blundell, T.L.
PDB entry 3vno: Cytochrome P450SP alpha (CYP152B1) mutant R241E
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2012-01-17
Authors: Fujishiro, T., Shoji, O., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 3vnp: Crystal structure of hypothetical protein (GK2848) from Geobacillus Kaustophilus
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-01-17
Authors: Karthe, P.P., Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3vnq: Co-crystal structure of NRPS adenylation protein CytC1 with ATP from streptomyces
Classification: LIGASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-01-17
Authors: Okumura, H., Ueki, M., Shiro, Y., Osada, H.
PDB entry 3vnr: Co-crystal structure of NRPS adenylation protein CytC1 with aminobutyric acid and AMP from streptomyces
Classification: LIGASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2012-01-17
Authors: Okumura, H., Ueki, M., Shiro, Y., Osada, H.
PDB entry 3vns: Co-crystal structure of NRPS adenylation protein CytC1 with D-valine and AMP from streptomyces
Classification: LIGASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2012-01-17
Authors: Okumura, H., Ueki, M., Shiro, Y., Osada, H.
PDB entry 3vnt: Crystal Structure of the Kinase domain of Human VEGFR2 with a [1,3]thiazolo[5,4-b]pyridine derivative
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2012-01-17
Authors: Oki, H.
PDB entry 3vnu: Complex structure of viral RNA polymerase I
Classification: TRANSLATION, TRANSFERASE/RNA
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2012-01-18
Authors: Takeshita, D., Tomita, K.
PDB entry 3vnv: Complex structure of viral RNA polymerase II
Classification: TRANSLATION, TRANSFERASE/RNA
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.604 Å
Deposited: 2012-01-18
Authors: Takeshita, D., Tomita, K.
PDB entry 3vnw: Crystal structure of cytochrome c552 from Thermus thermophilus at pH 5.44
Classification: ELECTRON TRANSPORT
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2012-01-18
Authors: Yamada, S., Bouley-Ford, N.D., Keller, G.E., Winkler, J.R., Gray, H.B.
PDB entry 3vnx: Crystal structure of ferritin from multicellular green algae, Ulva pertusa.
Classification: OXIDOREDUCTASE
Source organism: Ulva pertusa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-01-18
Authors: Masuda, T., Morimoto, S.I., Mikami, B., Toyohara, H.
PDB entry 3vny: Crystal structure of beta-glucuronidase from Acidobacterium capsulatum
Classification: HYDROLASE
Source organism: Acidobacterium capsulatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-01-18
Authors: Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Kaneko, S.
PDB entry 3vnz: Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with D-glucuronic acid
Classification: HYDROLASE
Source organism: Acidobacterium capsulatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-01-18
Authors: Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Kaneko, S.
PDB entry 3vo0: Crystal structure of beta-glucuronidase from Acidobacterium capsulatum covalent-bonded with 2-deoxy-2-fluoro-D-glucuronic acid
Classification: HYDROLASE
Source organism: Acidobacterium capsulatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-01-18
Authors: Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Jongkees, S., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Withers, S., Kaneko, S.
PDB entry 3vo1: Crystal structure of Zea mays leaf ferredoxin-NADP+ reductase II
Classification: OXIDOREDUCTASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-01-18
Authors: Muraki, N., Hase, T., Kurisu, G.
PDB entry 3vo2: Crystal structure of Zea mays leaf ferredoxin-NADP+ reductase III
Classification: OXIDOREDUCTASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2012-01-18
Authors: Muraki, N., Hase, T., Kurisu, G.
PDB entry 3vo3: Crystal Structure of the Kinase domain of Human VEGFR2 with imidazo[1,2-b]pyridazine derivative
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2012-01-19
Authors: Oki, H., Okada, K.
PDB entry 3vo8: Staphylococcus aureus FtsZ GDP-form
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.255 Å
Deposited: 2012-01-20
Authors: Matsui, T., Mogi, N., Yao, M., Tanaka, I.
PDB entry 3vo9: Staphylococcus aureus FtsZ apo-form (SeMet)
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.706 Å
Deposited: 2012-01-20
Authors: Matsui, T., Yamane, J., Mogi, N., Yao, M., Tanaka, I.
PDB entry 3voa: Staphylococcus aureus FtsZ 12-316 GDP-form
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2012-01-20
Authors: Yamane, J., Matsui, T., Mogi, N., Yao, M., Tanaka, I.
PDB entry 3vob: Staphylococcus aureus FtsZ with PC190723
Classification: CELL CYCLE/INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.703 Å
Deposited: 2012-01-20
Authors: Yamane, J., Matsui, T., Mogi, N., Yamaguchi, H., Takemoto, H., Yao, M., Tanaka, I.
PDB entry 3voc: Crystal structure of the catalytic domain of beta-amylase from paenibacillus polymyxa
Classification: HYDROLASE
Source organism: Paenibacillus polymyxa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2012-01-21
Authors: Nishimura, S., Fujioka, T., Nakaniwa, T., Tada, T.
PDB entry 3vod: Crystal Structure of mutant MarR C80S from E.coli
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-01-21
Authors: Lou, H., Zhu, R., Hao, Z.
PDB entry 3voe: Crystal Structure of wild type MarR (apo form) from E.coli
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-01-21
Authors: Lou, H., Zhu, R., Hao, Z.
PDB entry 3vof: Cellobiohydrolase mutant, CcCel6C D102A, in the closed form
Classification: HYDROLASE
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-01-23
Authors: Tamura, M., Miyazaki, T., Tanaka, Y., Yoshida, M., Nishikawa, A., Tonozuka, T.
PDB entry 3vog: Catalytic domain of the cellobiohydrolase, CcCel6A, from Coprinopsis cinerea
Classification: HYDROLASE
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2012-01-24
Authors: Tamura, M., Miyazaki, T., Tanaka, Y., Yoshida, M., Nishikawa, A., Tonozuka, T.
PDB entry 3voh: CcCel6A catalytic domain complexed with cellobiose
Classification: HYDROLASE
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-01-24
Authors: Tamura, M., Miyazaki, T., Tanaka, Y., Yoshida, M., Nishikawa, A., Tonozuka, T.
PDB entry 3voi: CcCel6A catalytic domain complexed with p-nitrophenyl beta-D-cellotrioside
Classification: HYDROLASE
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-01-24
Authors: Tamura, M., Miyazaki, T., Tanaka, Y., Yoshida, M., Nishikawa, A., Tonozuka, T.
PDB entry 3voj: CcCel6A catalytic domain mutant D164A
Classification: HYDROLASE
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2012-01-24
Authors: Tamura, M., Miyazaki, T., Tanaka, Y., Yoshida, M., Nishikawa, A., Tonozuka, T.
PDB entry 3vok: X-ray Crystal Structure of Wild Type HrtR in the Apo Form with the Target DNA.
Classification: TRANSCRIPTION/DNA
Source organism: Lactococcus lactis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-01-27
Authors: Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.