LiteFold/PDB huggingface dataset:
PDB entry 9nu3: Uromodulin filament lattice in the kinked arrangement from human urine
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2025-03-19
Authors: Chang, A.N., Fitzpatrick, A.W.P.
PDB entry 9nu4: Structure of MurJ in complex with single gene lysis protein from phage M
Classification: TRANSPORT PROTEIN
Source organism: Enterobacteria phage M; Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-19
Authors: Li, Y.E., Clemons, W.M.
PDB entry 9nu5: Structure of MurJ in complex with single gene lysis protein from phage PP7
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12; Pseudomonas phage PP7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-03-19
Authors: Li, Y.E., Clemons, W.M.
PDB entry 9nu6: SARS-CoV-2 main protease with inhibitor
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-19
Authors: Dougan, D.R.
PDB entry 9nu8: Structure of MurJ in complex with single gene lysis protein from phage Changjiang3
Classification: TRANSPORT PROTEIN
Source organism: Changjiang levi-like virus 3; Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-19
Authors: Li, Y.E., Clemons, W.M.
PDB entry 9nu9: X-ray Crystal Structure of Fission Yeast Fsc1 protein in C2 Symmetry
Classification: CELL ADHESION
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-03-19
Authors: Azuka, C.D., Jin, X.
PDB entry 9nub: NMR solution structure of unmodified human matrix Gla protein
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-03-19
Authors: Lau, Y.S., Sharpe, S.
PDB entry 9nuc: CryoEM analysis of Phosphoglucose isomerase from P. aeruginosa reveals potential clinically relevant features
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.45 Å
Deposited: 2025-03-19
Authors: Sharma, K., Borgnia, J.M.
PDB entry 9nud: Y20S after Mg2+ (Sec18) - Class 2
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-03-19
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nue: Y20S after Mg2+ (Sec18) - Class 3
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-03-19
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nuf: Cryo-EM structure of the Nipah Virus nucleocapsid complex
Classification: VIRAL PROTEIN/RNA
Source organism: Henipavirus nipahense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-03-19
Authors: Liu, B., Yang, G.
PDB entry 9nuh: SsoPfMCM:DNA class 1a from merged particles
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nui: SsoPfMCM:DNA class 1b from merged particles
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuj: SsoPfMCM:DNA class 1c from merged particles
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuk: SsoPfMCM:DNA class 2a from merged particles
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nul: SsoPfMCM:DNA class 2b from merged particles
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9num: SsoPfMCM:DNA class 3 from merged particles
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nun: SsoPfMCM:DNA class 1a from DNA 1
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuo: SsoPfMCM:DNA class 1b from DNA 1
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nup: SsoPfMCM:DNA class 1c from DNA 1
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuq: SsoPfMCM:DNA class 2a from DNA 1
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nur: SsoPfMCM:DNA class 2b from DNA 1
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nus: SsoPfMCM:DNA class 3 from DNA 1
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Pyrococcus furiosus DSM 3638; Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nut: SsoPfMCM:DNA class 1a from DNA 2
Classification: REPLICATION
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuu: SsoPfMCM:DNA class 1b from DNA 2
Classification: REPLICATION
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuv: SsoPfMCM:DNA class 1c from DNA 2
Classification: REPLICATION
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuw: SsoPfMCM:DNA class 2a from DNA 2
Classification: REPLICATION
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nux: SsoPfMCM:DNA class 2b from DNA 2
Classification: REPLICATION
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuy: SsoPfMCM:DNA class 3 from DNA 2
Classification: REPLICATION
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-03-19
Authors: Enemark, E.J., Rasouli, S., Myasnikov, A.
PDB entry 9nuz: Y20S after Mg2+ (Sec18) - Class 4
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-03-20
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nv0: Sec18 Mg2+ class 2
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.83 Å
Deposited: 2025-03-20
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nv1: Sec18 Mg2+ class 1
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-03-20
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nv3: Hybrid model of a complex of BREX proteins BrxB and PglZ from Salmonella typhimurium
Classification: ANTIMICROBIAL PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.45 Å
Deposited: 2025-03-20
Authors: Doyle, L.A., Stoddard, B., Blower, T.R., Kaiser, B.
PDB entry 9nv4: mjHSP16.5 apo-contracted (37C)
Classification: CHAPERONE
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-03-20
Authors: Miller, A.P., Reichow, S.L.
PDB entry 9nv5: Crystal structure of phosphoglycerate mutase from Trichomonas vaginalis
Classification: ISOMERASE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-03-20
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9nv7: mjHSP16.5 apo-expanded (37C)
Classification: CHAPERONE
Source organism: Methanocaldococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2025-03-20
Authors: Miller, A.P., Reichow, S.L.
PDB entry 9nv8: mjHSP16.5 apo 75C
Classification: CHAPERONE
Source organism: Methanocaldococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-03-20
Authors: Miller, A.P., Reichow, S.L.
PDB entry 9nv9: NSF Mg2+ class 1 heptamer
Classification: TRANSLOCASE
Source organism: Cricetulus griseus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-20
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nvc: mjHSP16.5 24mer (+lysozyme, 75C)
Classification: CHAPERONE
Source organism: Methanocaldococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-03-20
Authors: Miller, A.P., Reichow, S.L.
PDB entry 9nvd: NSF Mg2+ class 2 hexamer
Classification: TRANSLOCASE
Source organism: Cricetulus griseus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2025-03-20
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nvf: mjHSP16.5 26mer (+lysozyme, 75C)
Classification: CHAPERONE
Source organism: Methanocaldococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-03-20
Authors: Miller, A.P., Reichow, S.L.
PDB entry 9nvg: Structure of SARS-CoV-2 BA.1 spike RBD bound to COV2-3835 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-20
Authors: Ramamohan, A.R., Johnson, N.V., McLellan, J.S.
PDB entry 9nvh: NMR structure of conotoxin k-SrXIA
Classification: TOXIN
Source organism: Conus spurius
Experimental method: SOLUTION NMR
Deposited: 2025-03-20
Authors: Melchor-Meneses, C.M., del Rio-Portilla, F.
PDB entry 9nvi: mjHSP16.5 32mer (+lysozyme, 75C)
Classification: CHAPERONE
Source organism: Methanocaldococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.37 Å
Deposited: 2025-03-20
Authors: Miller, A.P., Reichow, S.L.
PDB entry 9nvj: mjHSP16.5 34mer (+lysozyme, 75C)
Classification: CHAPERONE
Source organism: Methanocaldococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.71 Å
Deposited: 2025-03-20
Authors: Miller, A.P., Reichow, S.L.
PDB entry 9nvk: mjHSP16.5 36mer (+lysozyme, 75C)
Classification: CHAPERONE
Source organism: Methanocaldococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-03-20
Authors: Miller, A.P., Reichow, S.L.
PDB entry 9nvl: ATPase Hybrid F1 with the ancestral core domains Binding Dwell
Classification: ELECTRON TRANSPORT
Source organism: Bacillus sp. PS3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2025-03-20
Authors: Stewart, A.G., Noji, H., Sobti, M., Suzuki, A.K.
PDB entry 9nvm: ATPase Hybrid F1 with the ancestral core domains Catalytic Dwell
Classification: ELECTRON TRANSPORT
Source organism: Bacillus sp. PS3; Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-03-20
Authors: Stewart, A.G., Noji, H., Sobti, M., Suzuki, A.K.
PDB entry 9nvn: Structure of Nanchung-Inactive-Calmodulin in apo state
Classification: TRANSPORT PROTEIN
Source organism: Halyomorpha halys; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-03-21
Authors: Fedor, J.G., Lee, S.-Y.
PDB entry 9nvo: Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide
Classification: TRANSPORT PROTEIN
Source organism: Halyomorpha halys; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-03-21
Authors: Fedor, J.G., Lee, S.-Y.
PDB entry 9nvp: Structure of Nanchung-Inactive-Calmodulin in complex with Nicotinamide, EDTA
Classification: TRANSPORT PROTEIN
Source organism: Halyomorpha halys; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-03-21
Authors: Fedor, J.G., Lee, S.-Y.
PDB entry 9nvq: Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen and calcium
Classification: TRANSPORT PROTEIN
Source organism: Halyomorpha halys; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-03-21
Authors: Fedor, J.G., Lee, S.-Y.
PDB entry 9nvr: Structure of Nanchung-Inactive-Calmodulin in complex with Afidopyropen, EDTA
Classification: TRANSPORT PROTEIN
Source organism: Halyomorpha halys; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-03-21
Authors: Fedor, J.G., Lee, S.-Y.
PDB entry 9nvs: Structure of a pentameric Nanchung in complex with Afidopyropen
Classification: TRANSPORT PROTEIN
Source organism: Halyomorpha halys
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-03-21
Authors: Fedor, J.G., Lee, S.-Y.
PDB entry 9nvu: Engineered OrufIscB-omegaRNA-target DNA complex
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: metagenome; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2025-03-21
Authors: Xu, P., Zhu, S., Zhang, F.
PDB entry 9nvv: Cryo-EM structure of V2 apex germline-targeting HIV Env trimer Q23-APEX-GT2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-21
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9nvw: Cryo-EM structure of rhesus antibody CH35-Apex1.08 in complex with HIV Env trimer Q23-APEX-GT2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-21
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9nvx: Cryo-EM structure of rhesus antibody CI91-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-21
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9nvy: Cryo-EM structure of rhesus antibody CH70-Apex2.01 in complex with HIV Env trimer Q23-APEX-GT2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus type 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-03-21
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9nvz: Cryo-EM structure of rhesus antibody CH70-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-21
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9nw0: Cryo-EM structure of rhesus antibody CH42-Apex1.01 in complex with HIV Env trimer Q23-APEX-GT2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-21
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9nw1: Cryo-EM structure of rhesus antibody CH42-Apex2.01 in complex with HIV Env trimer Q23-APEX-GT2
Classification: VIRAL PROTEIN/IMMUE SYSTEM
Source organism: Human immunodeficiency virus type 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-21
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9nw3: Ciliary tip central pair
Classification: PROTEIN BINDING
Source organism: Tetrahymena thermophila CU428
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-03-21
Authors: Legal, T.L., Bui, K.H.
PDB entry 9nw4: Structure of CISV1 antibody bound to PvCSP repeat peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-03-21
Authors: Hurlburt, N.K., Pancera, M.
PDB entry 9nw5: 3H4v31 anti-HLA-E-VL9 Fab
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-03-21
Authors: Wrapp, D., Hwang, J.K., Marston, D.J., Haynes, B.F., Azoitei, M.L.
PDB entry 9nw6: CA147v24 Fab bound to HLA-E-VL9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-03-21
Authors: Wrapp, D., Hwang, J.K., Marston, D.J., Haynes, B.F., Azoitei, M.L.
PDB entry 9nw7: CA117v2v8 Fab bound to HLA-E-VL9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-21
Authors: Wrapp, D., Hwang, J.K., Marston, D.J., Haynes, B.F., Azoitei, M.L.
PDB entry 9nw8: CA117v2v8 Fab bound to HLA-E-Mtb44
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-03-21
Authors: Wrapp, D., Hwang, J.K., Marston, D.J., Haynes, B.F., Azoitei, M.L.
PDB entry 9nw9: CA117v2v8 Fab bound to HLA-E-RL9HIV
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-03-21
Authors: Wrapp, D., Hwang, J.K., Marston, D.J., Haynes, B.F., Azoitei, M.L.
PDB entry 9nwa: Crystal structure of SARS-CoV-2 main protease in complex with an inhibitor TKB-277-5Cl
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-21
Authors: Bulut, H., Kuwata, N., Hayashi, H., Aoki, H., Das, D., Li, M., Wlodawer, A., Misumi, S., Tamamura, H., Mitsuya, H.
PDB entry 9nwb: Crystal structure of SARS-CoV-2 main protease in complex with an inhibitor TKB-280-5I
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-03-21
Authors: Bulut, H., Hayashi, H., Hattori, S., Li, M., Das, D., Wlodawer, A., Tamamura, H., Mitsuya, H.
PDB entry 9nwc: Crystal structure of SARS-CoV-2 main protease in complex with an inhibitor TKB-276-5Br
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-03-21
Authors: Bulut, H., Kuwata, N., Hayashi, H., Aoki, H., Hattori, S., Li, M., Das, D., Misumi, S., Wlodawer, A., Tamamura, H., Mitsuya, H.
PDB entry 9nwd: Human E3 ligase UBR4-KCMF1-calmodulin complex (N-terminal)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-22
Authors: Yang, Z., Haakonsen, D.L., Heider, M., Witus, S.R., Zelter, A., Beschauner, T., MacCoss, M.J., Rape, M.
PDB entry 9nwe: E3 ligase UBR4-KCMF1-calmodulin complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-22
Authors: Yang, Z., Rape, M.P.
PDB entry 9nwf: Structure of an inactive beta-D-glucuronate dehydratase mutant in complex with chondrosine
Classification: LYASE
Source organism: Bacteroides caccae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-03-22
Authors: Boraston, A.B., Alvarez, B., Canil, O.
PDB entry 9nwg: Crystal Structure of the Third Immunoglobulin-Like Domain of Human Muscle-Specific Kinase
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-22
Authors: Canciani, A., Palamini, M., Forneris, F.
PDB entry 9nwh: Long-wavelength SAD Crystal Structure of the Third Immunoglobulin-Like Domain of Human Muscle-Specific Kinase (MuSK)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-03-22
Authors: Canciani, A., Palamini, M., Forneris, F.
PDB entry 9nwi: Pseudomonas phage Pa223 tail (C6 symmetry)
Classification: VIRUS
Source organism: Pseudomonas virus Pa223
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-03-23
Authors: Hou, C.F.D., Cingolani, G., Lokareddy, K.R.
PDB entry 9nwj: Apo WT SthK in 3:1 DOPC:POPE nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Spirochaeta thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-03-23
Authors: Schmidpeter, P.A., Newton, A.J.
PDB entry 9nwk: cAMP-bound WT SthK in 3:1 DOPC:POPE nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Spirochaeta thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-03-23
Authors: Schmidpeter, P.A., Newton, A.J.
PDB entry 9nwm: Pseudomonas phage Pa223 Portal (C12 symmetry)
Classification: VIRUS
Source organism: Pseudomonas virus Pa223
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-03-24
Authors: Hou, C.F.D., Cingolani, G., Lokareddy, K.R.
PDB entry 9nwn: Structure of minimal CRISPR polymerase bound to ApNHpp
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-03-24
Authors: Doherty, E.E., Bolling, C.B., Wilcox, X.E., Doudna, J.A.
PDB entry 9nwo: Human delta 2 receptor in the resting state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2025-03-24
Authors: Wang, H., Ahmed, F., Mondal, A.K., Twomey, E.C.
PDB entry 9nwp: Human delta 2 receptor activated by D-serine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2025-03-24
Authors: Wang, H., Ahmed, F., Kumar Mondal, A., Twomey, E.C.
PDB entry 9nwq: Human delta 2 receptor in the resting state with ATD deleted
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2025-03-24
Authors: Wang, W., Ahmed, F., Kumar Mondal, A., Twomey, E.C.
PDB entry 9nwr: Cryo-EM of Class-2 of YM1P nanotube
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-03-24
Authors: Yi, M., Zia, A., Egelman, E.H., Xu, B., Wang, F.
PDB entry 9nws: Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-03-24
Authors: Park, J., Hunkeler, M., Roy Burman, S.S., Fishcer, E.S.
PDB entry 9nwt: Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-03-24
Authors: Park, J., Hunkeler, M., Roy Burman, S.S., Fischer, E.S.
PDB entry 9nwu: Crystal structure of a high affinity VL-VH tetrabody for the erythropoietin receptor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-03-24
Authors: Singer, A.U., Bruce, H.A., Yang, N., Blazer, L.L., Adams, J.J., Sidhu, S.S.
PDB entry 9nwv: Cryo-EM of Class-3 of YM1P nanotube
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-03-24
Authors: Yi, M., Zia, A., Egelman, E.H., Xu, B., Wang, F.
PDB entry 9nww: Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state
Classification: TRANSFERASE
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2025-03-24
Authors: Zinkle, A.P., Bunuro-Batista, M., Herrera, C.M., Erramilli, S.K., Kloss, B., Ashraf, K.U., Nosol, K., Zhang, G., Cater, R.J., Marty, M.T., Kossiakoff, A.A., Trent, M.S., Nygaard, R., Stansfeld, P.J., Mancia, F.
PDB entry 9nwx: Discovery of a Small Molecule ITK and Pan-TRK Kinase Inhibitor (PF-07245303) for the Potential Topical Treatment of Atopic Dermatitis
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.348 Å
Deposited: 2025-03-24
Authors: Liu, S.
PDB entry 9nwy: Discovery of MTA-cooperative PRMT5 Inhibitors from Co-factor directed DNA-Encoded Library Screens
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-03-24
Authors: GhimireRijal, S., Mukund, S.
PDB entry 9nwz: LR4-814 peptide NMR structure
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2025-03-24
Authors: Fry, D.C., Burk, M.J.
PDB entry 9nx0: Alpha7-nicotinic acetylcholine receptor bound to conotoxin ImI
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-03-25
Authors: Stowell, M.H.B., Hibbs, R.E., Noviello, C.M., Bhattacharjee, B.
PDB entry 9nx1: Alpha7-nicotinic acetylcholine receptor bound to conotoxin ImII
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-25
Authors: Stowell, M.H.B., Hibbs, R.E., Noviello, C.M., Bhattacharjee, B.
PDB entry 9nx2: Muscle-type nicotinic acetylcholine receptor bound to conotoxin ImII
Classification: MEMBRANE PROTEIN
Source organism: Tetronarce californica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-03-25
Authors: Stowell, M.H.B., Hibbs, R.E., Noviello, C.M., Bhattacharjee, B.
PDB entry 9nx3: Crystal structure of GP232 tail fiber recognition domain from mycobacteriophage Bxz-1
Classification: VIRAL PROTEIN
Source organism: Bixzunavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-03-25
Authors: Di, D., Tsai, J.H., Krieger, I.V., Sacchettini, J.C.
PDB entry 9nx4: Crystal Structure of a P. Aeruginosa Gyrase Chimera In Complex with 20mer DNA and Ciprofloxacin
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-03-25
Authors: Pedersen, L.C., Doetsch, P.W., Garcia-Villada, L., Degtyareva, N., Perera, U.L.
PDB entry 9nx5: Crystal Structure of a P. Aeruginosa Gyrase
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-03-25
Authors: Pedersen, L.C., Doetsch, P.W., Garcia-Villada, L., Degtyareva, N., Perera, U.L.
PDB entry 9nx6: Human GAR transformylase in complex with GAR substrate and AGF302 inhibitor
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2025-03-25
Authors: Wong-Roushar, J., Dann III, C.E.
PDB entry 9nxc: Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-03-25
Authors: Qian, R., Jing, W., Vinay, I., Shanwen, Z., Jeehae, S., William, G.L., Luis, M.R.H., Jong, H.S., Young, A.G., IIya, L., Kirill, M., Baron, C., Huan, B.
PDB entry 9nxe: Crystal Structure of Calcineurin Clinical Variant E282K
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2025-03-25
Authors: Parikh, T., Shirakawa, K.T., Page, R., Peti, W.
PDB entry 9nxf: Crystal structure of CN:Tak1 complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2025-03-25
Authors: Shirakawa, K.T., Parikh, T., Page, R., Peti, W.
PDB entry 9nxg: An alpha-l-arabinofuranosidase (AtAbf43C) from Acetivibrio thermocellus DSM1313
Classification: HYDROLASE
Source organism: Acetivibrio thermocellus DSM 1313
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-03-25
Authors: Galindo, J.L., Jeffrey, P.D., Conway, J.M.
PDB entry 9nxh: An alpha-l-arabinofuranosidase (AtAbf43C) from Acetivibrio thermocellus DSM1313 bound to arabinofuranose
Classification: HYDROLASE
Source organism: Acetivibrio thermocellus DSM 1313
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-25
Authors: Galindo, J.L., Jeffrey, P.D., Conway, J.M.
PDB entry 9nxi: CBM42 domain of alpha-l-arabinofuranosidase (AtAbf43C) from Acetivibrio thermocellus DSM1313
Classification: HYDROLASE
Source organism: Acetivibrio thermocellus DSM 1313
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-25
Authors: Galindo, J.L., Jeffrey, P.D., Conway, J.M.
PDB entry 9nxj: The GH43 domain of an alpha-l-arabinofuranosidase (AtAbf43C_GH43) from Acetivibrio thermocellus DSM1313
Classification: HYDROLASE
Source organism: Acetivibrio thermocellus DSM 1313
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2025-03-25
Authors: Galindo, J.L., Jeffrey, P.D., Conway, J.M.
PDB entry 9nxk: Pseudomonas phage Pa223 tail fiber
Classification: VIRUS
Source organism: Pseudomonas virus Pa223
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-25
Authors: Hou, C.F.D., Cingolani, G., Lokareddy, K.R.
PDB entry 9nxl: Crystal structure of steroid aldehyde dehydrogenase (Sad) from Caldimonas tepidiphilia
Classification: OXIDOREDUCTASE
Source organism: Caldimonas tepidiphila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-25
Authors: Rolfe, N., Myskiw, D., Patton, M.T., Forrester, T.J.B., Kimber, M.S., Seah, S.Y.K.
PDB entry 9nxm: Crystal structure of Arabidopsis thaliana NUDT11 E90Q/E94Q mutant
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2025-03-25
Authors: Chu, H.F., Liang, T.
PDB entry 9nxn: Crystal structure of CN:RII alpha
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-25
Authors: Shirakawa, K.T., Parikh, T., Page, R., Peti, W.
PDB entry 9nxo: Pseudomonas phage Pa223 periplasmic tunnel (pre-ejection, dodecameric assembly)
Classification: VIRUS
Source organism: Pseudomonas virus Pa223
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-25
Authors: Hou, C.F.D., Cingolani, G., Lokareddy, K.R.
PDB entry 9nxp: Pseudomonas phage Pa223 tail needle
Classification: VIRUS
Source organism: Pseudomonas virus Pa223
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2025-03-25
Authors: Hou, C.F.D., Cingolani, G., Lokareddy, K.R.
PDB entry 9nxs: Crystal structure of the post-reactive state of porcine OAS1 in complex with dsRNA and products 25A2 and PPi bound to the catalytic center.
Classification: TRANSFERASE/RNA
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-26
Authors: Kats, P., Zhou, X., Wiebe, J., Zeymer, O., Baruch, P., Taft, M.H., Reinke, P.Y.A., Guenther, S., Meents, A., Hartmann, R., Manstein, D.J., Fedorov, R.
PDB entry 9nxt: Crystal Structure of Glutathione S-Transferase Per a 23 (sigma class)
Classification: TRANSFERASE
Source organism: Periplaneta americana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-03-26
Authors: Zong, G., Pedersen, L.C., Mueller, G.A.
PDB entry 9nxu: Crystal Structure of Glutathione S-Transferase Per a 5 (delta class)
Classification: TRANSFERASE
Source organism: Periplaneta americana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-03-26
Authors: Zong, G., Pedersen, L.C., Mueller, G.A.
PDB entry 9nxv: Crystal Structure of Glutathione S-Transferase Bla g 5 (sigma class)
Classification: TRANSFERASE
Source organism: Blattella germanica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-03-26
Authors: Zong, G., Pedersen, L.C., Mueller, G.A.
PDB entry 9nxw: Crystal Structure of Glutathione S-Transferase Bla g 24 (delta class)
Classification: TRANSFERASE
Source organism: Blattella germanica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2025-03-26
Authors: Zong, G., Pedersen, L.C., Mueller, G.A.
PDB entry 9nxx: LmuA_conformation 1
Classification: DNA BINDING PROTEIN
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-03-26
Authors: Chakravarti, A., Zhang, Z.
PDB entry 9nxy: Cryo-EM structure of SARS-CoV-2 spike S2' trimer
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-03-26
Authors: Shi, W., Jonaid, G., Chen, B.
PDB entry 9nxz: Cryo-EM of Class-1 of YM1P nanotube
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-03-26
Authors: Yi, M., Zia, A., Egelman, E.H., Xu, B., Wang, F.
PDB entry 9ny0: Cryo-EM of Class-4 of YM1P nanotube
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-03-26
Authors: Yi, M., Zia, A., Egelman, E.H., Xu, B., Wang, F.
PDB entry 9ny1: LmuA_conformation 2_assymetric
Classification: DNA BINDING PROTEIN
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-26
Authors: Chakravarti, A., Zhang, Z.
PDB entry 9ny2: Pseudomonas phage Pa223 capsid
Classification: VIRUS
Source organism: Pseudomonas virus Pa223
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-03-26
Authors: Hou, C.F.D., Cingolani, G., Lokareddy, K.R.
PDB entry 9ny3: LR4-488 peptide NMR structure
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2025-03-26
Authors: Fry, D.C., Burk, M.J.
PDB entry 9ny4: USP21 bound to H2AK119ub nucleosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-03-26
Authors: Rahman, S., Wolberger, C.
PDB entry 9ny5: LmuABC_apo
Classification: DNA BINDING PROTEIN
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-03-26
Authors: Chakravarti, A., Zhang, Z.
PDB entry 9ny6: Pseudomonas phage Pa223 capsid spike
Classification: VIRUS
Source organism: Pseudomonas virus Pa223
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-26
Authors: Hou, C.F.D., Lokareddy, K.R., Cingolani, G.
PDB entry 9ny7: Crystal structure of the ribose operon repressor, RbsR, bound to ribose
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-03-26
Authors: Wells, M.L., Lu, C., Sultanov, D., Weber, K.C., Gong, Z., Glasgow, A.
PDB entry 9ny8: Crystal structure of the ribose operon repressor, RbsR, bound to ribose operon
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-26
Authors: Wells, M.L., Lu, C., Sultanov, D., Weber, K.C., Gong, Z., Glasgow, A.
PDB entry 9ny9: Crystal structure of the post-reactive state of porcine OAS1 in complex with dsRNA, catalytic center bound PPi, and dissociated 25A2.
Classification: TRANSFERASE/RNA
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2025-03-27
Authors: Kats, P., Zhou, X., Wiebe, J., Zeymer, O., Baruch, P., Taft, M.H., Reinke, P.Y.A., Guenther, S., Meents, A., Hartmann, R., Manstein, D.J., Fedorov, R.
PDB entry 9nyb: Crystal structure of the pre-reactive state of porcine OAS1 in complex with dsRNA, two ApCpp substrate analogs, three catalytic Mn2+ ions.
Classification: TRANSFERASE/RNA
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-27
Authors: Kats, P., Zhou, X., Wiebe, J., Zeymer, O., Baruch, P., Taft, M.H., Reinke, P.Y.A., Guenther, S., Meents, A., Hartmann, R., Manstein, D.J., Fedorov, R.
PDB entry 9nyc: Cryo-EM structure of the glycosyltransferase GtrB in the substrate-bound state
Classification: MEMBRANE PROTEIN
Source organism: Synechocystis sp. PCC 6803 substr. Kazusa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-03-27
Authors: Morgan, R.T., Motta, S., Gil-Iturbe, E., Bhattacharjee, B., di Muccio, G., Romagnoli, A., Anwar, M.T., Mishra, B., Ashraf, K., Bang, I., di Marino, D., Lowary, T.L., Quick, M., Petrou, V.I., Stowell, M.H.B., Nygaard, R., Mancia, F.
PDB entry 9nyd: Cryo-EM structure of the glycosyltransferase GtrB in the pre-catalysis and product-bound state
Classification: MEMBRANE PROTEIN
Source organism: Synechocystis sp. PCC 6803 substr. Kazusa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-03-27
Authors: Morgan, R.T., Motta, S., Gil-Iturbe, E., di Muccio, G., Bhattacharjee, B., Romagnoli, A., Anwar, M.T., Mishra, B., Ashraf, K., Bang, I., di Marino, D., Lowary, T.L., Quick, M., Petrou, V.I., Stowell, M.H.B., Nygaard, R., Mancia, F.
PDB entry 9nye: Cryo-EM structure of the glycosyltransferase GtrB in the apo state (octamer volume)
Classification: MEMBRANE PROTEIN
Source organism: Synechocystis sp. PCC 6803 substr. Kazusa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-03-27
Authors: Morgan, R.T., Motta, S., Gil-Iturbe, E., di Muccio, G., Bhattacharjee, B., Romagnoli, A., Anwar, M.T., Mishra, B., Ashraf, K., Bang, I., di Marino, D., Lowary, T.L., Quick, M., Petrou, V.I., Stowell, M.H.B., Nygaard, R., Mancia, F.
PDB entry 9nyf: Cryo-EM structure of the glycosyltransferase GtrB (tetramer volume)
Classification: MEMBRANE PROTEIN
Source organism: Synechocystis sp. PCC 6803 substr. Kazusa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-03-27
Authors: Morgan, R.T., Motta, S., Gil-Iturbe, E., di Muccio, G., Bhattacharjee, B., Romagnoli, A., Anwar, M.T., Mishra, B., Ashraf, K., Bang, I., di Marino, D., Lowary, T.L., Quick, M., Petrou, V.I., Stowell, M.H.B., Nygaard, R., Mancia, F.
PDB entry 9nyg: LmuABC-DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-03-27
Authors: Chakravarti, A., Zhang, Z.
PDB entry 9nyi: Structure of HalA in complex with oligodeoxyadenylate
Classification: ANTIVIRAL PROTEIN
Source organism: Rhodobacteraceae bacterium QY30; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.98 Å
Deposited: 2025-03-27
Authors: Tan, J.M.J., Melamed, S., Cofsky, J.C., Syangtan, D., Hobbs, S.J., Del Marmol, J., Jost, M., Kruse, A.C., Sorek, S., Kranzusch, P.J.
PDB entry 9nyk: Cryo-EM structure of the glycosyltransferase GtrB in the pre-intermediate state
Classification: MEMBRANE PROTEIN
Source organism: Synechocystis sp. PCC 6803 substr. Kazusa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-03-27
Authors: Morgan, R.T., Motta, S., Gil-Iturbe, E., di Muccio, G., Bhattacharjee, B., Romagnoli, A., Anwar, M.T., Mishra, B., Ashraf, K., Bang, I., di Marino, D., Lowary, T.L., Quick, M., Petrou, V.I., Stowell, M.H.B., Nygaard, R., Mancia, F.
PDB entry 9nym: Crystal structure of an MKP5 allosteric loop mutant, N448A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-27
Authors: Manjula, R., Bennett, A.M., Lolis, E.
PDB entry 9nyn: Conformational flexibility in HLA-B8: peptide tuning structural and dynamical changes
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-03-27
Authors: Li, L., Bouvier, M.
PDB entry 9nyo: Clostridium acetobutylicum alcohol dehydrogenase bound to NADP+, disordered nicotinamide
Classification: OXIDOREDUCTASE
Source organism: Clostridium acetobutylicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-28
Authors: Madzelan, P., Wilson, M.A.
PDB entry 9nyp: Cryo-EM structure of NVL bound the the MM927 inhibitor
Classification: TRANSLOCASE
Source organism: Homo sapiens; unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-03-28
Authors: Cruz, V.E., Erzberger, J.P.
PDB entry 9nyq: Crystal structure of CDK2/CyclinE1 in complex with Cpd 3
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-03-28
Authors: Collier, P., Zheng, X., Ford, M., Weiss, M., Aversa, R., Chen, D., Li, K., Growney, J.D., Yang, A., Sathappa, M., Breitkopf, S.B., Enerson, B., Sawant, R., Su, L., Howarth, L., Liang, T., Paul, A., Sharma, K., Williams, J., Kwiatkowski, N.P.
PDB entry 9nyr: Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-03-28
Authors: Collier, P., Zheng, X., Ford, M., Weiss, M., Aversa, R., Chen, D., Li, K., Growney, J.D., Yang, A., Sathappa, M., Breitkopf, S.B., Enerson, B., Sawant, R., Su, L., Howarth, L., Liang, T., Paul, A., Sharma, K., Williams, J., Kwiatkowski, N.P.
PDB entry 9nys: Human DNA Ligase 1 E346A/E592A/K845N triple mutant with 3'-A:T nick
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2025-03-28
Authors: KanalElamparithi, B., Caglayan, M.
PDB entry 9nyt: Crystal structure of Human p38 alpha MAPK in Complex with MW01-32-154JS
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-03-28
Authors: Brunzelle, J.S., Shuvalova, L., Roy, S.M., Watterson, D.M.
PDB entry 9nyu: Crystal structure of KwaB dimer
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2025-03-28
Authors: Zhiying, Z., Dinshaw, J.P.
PDB entry 9nyx: Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State
Classification: ISOMERASE/IMMUNE SYSTEM
Source organism: Bos taurus; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-29
Authors: Huang, W., Salom-Arbona, D., Suder, D., Taylor, D.J., Palczewski, K.
PDB entry 9nyy: Nucleic acid bound human SLFN14, State 1
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2025-03-29
Authors: Van Riper, J., Martinez-Claros, A.O., Wang, L., Schneiderman, H., Maheshwari, S., Pillon, M.C.
PDB entry 9nyz: Crystal structure of DCKA/glutamate-bound GluN1/GluN2A agonist binding domains with UCM-101
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2025-03-30
Authors: Lotti, J.S., Syrenne, J.T., Yates-Hansen, C.K., McClelland, L.J., Hansen, K.B.
PDB entry 9nz1: Adeno-associated virus serotype 11 basic regions in complex with importin alpha 2
Classification: TRANSPORT PROTEIN
Source organism: Adeno-associated virus 11; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-03-31
Authors: Hoad, M., Forwood, J.K.
PDB entry 9nz3: SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens; SARS-CoV-2 pseudovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-03-31
Authors: Mann, M.K., Abeywickrema, P.
PDB entry 9nz4: SARS-CoV M protein dimer in complex with FAb B
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-03-31
Authors: Mann, M.K., Abeywickrema, P.
PDB entry 9nz5: MERSmut-CoV M protein dimer in complex with FAb B
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens; Middle East respiratory syndrome-related coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-03-31
Authors: Mann, M.K., Abeywickrema, P.
PDB entry 9nz6: Oxidoreductase isolated from Xanthomonas citri pv. citri A306
Classification: OXIDOREDUCTASE
Source organism: Xanthomonas citri pv. citri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2025-03-31
Authors: Santos, L.S., Torres, S.C., Balan, A.
PDB entry 9nz7: Crystal structure of human DYNLL1-S64A/S88A mutant dimer
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-03-31
Authors: Syed, A., Arvai, A.S., Chowdhury, D., Tainer, J.A.
PDB entry 9nz8: Crystal structure of human OGG1 in a DNA-free state
Classification: HYDROLASE, LYASE/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-03-31
Authors: Syed, A., Arvai, A.S., Tainer, J.A.
PDB entry 9nz9: Crystal structure of product-bound human OGG1(WT)
Classification: HYDROLASE, LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-31
Authors: Syed, A., Arvai, A.S., Tainer, J.A.
PDB entry 9nza: Crystal structure of human OGG1 (WT) in a product bound state in the presence of the agonist F01
Classification: HYDROLASE, LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-31
Authors: Syed, A., Arvai, A.S., Tainer, J.A.
PDB entry 9nzb: Crystal Structure of acyl-CoA lyase subunit beta from Pseudomonas aeruginosa PAO1
Classification: LYASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-03-31
Authors: Minasov, G., Shukla, S., Shuvalova, L., Brunzelle, J.S., Warwzak, Z., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)