LiteFold/PDB huggingface dataset:
PDB entry 8q8o: PA14_16140 protein: the regulator of an operon involved in the biofilm formation in PA14 P. aeruginosa
Classification: CHAPERONE
Source organism: Pseudomonas aeruginosa UCBPP-PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-18
Authors: Broutin, I., Phan, G., Girard, E.
PDB entry 8q8p: Cryo-EM structure of the magnesium channel CtMrs2 in the closed state
Classification: MEMBRANE PROTEIN
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-08-18
Authors: Gourdon, P., Li, P.
PDB entry 8q8q: Cryo-EM structure of the magnesium channel CtMrs2 in the open state
Classification: MEMBRANE PROTEIN
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-08-18
Authors: Gourdon, P., Li, P.
PDB entry 8q8r: Tau - AD-PHF
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8s: Tau - AD-THF
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8u: Tau - CTE-MIA1 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8v: Tau - CTE-MIA3
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8w: Tau - CTE-MIA4 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-08-19
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8x: Tau - CTE-MIA5 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-08-19
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8y: Tau - CTE-MIA6 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-08-19
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8z: Tau - CTE-MIA7 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-08-19
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q90: Halophilic Lrp transcription factor
Classification: TRANSCRIPTION
Source organism: Haloferax mediterranei
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-19
Authors: Garcia-Bonete, M.J., Bonete, M.-J.
PDB entry 8q91: Structure of the human 20S U5 snRNP core
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-19
Authors: Schneider, S., Galej, W.P.
PDB entry 8q92: P301S Tau Filaments from the Brains of PS19 Transgenic Mouse Line
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-08-19
Authors: Schweighauser, M., Murzin, A.G., Macdonald, J., Lavenir, I., Crowther, R.A., Scheres, S.H.W., Goedert, M.
PDB entry 8q93: Crystal structure of the SARS-COV-2 RBD with neutralizing-VHHs Re30H02 and Re21D01
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-08-19
Authors: Aksu, M., Guttler, T., Rymarenko, O., Gorlich, D.
PDB entry 8q94: Crystal structure of The SARS-COV-2 BA.2.75 RBD with neutralizing-VHHs Re32D03 and Ma3B12
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-19
Authors: Aksu, M., Guttler, T., Gorlich, D.
PDB entry 8q95: Crystal structure of the SARS-CoV-2 BA.1 RBD with neutralizing-VHHs Ma16B06 and Ma3F05
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-08-19
Authors: Aksu, M., Rymarenko, O., Guttler, T., Gorlich, D.
PDB entry 8q96: P301S Tau Filaments from the Brains of Tg2541 Transgenic Mouse Line
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2023-08-19
Authors: Schweighauser, M., Murzin, A.G., Macdonald, J., Lavenir, I., Crowther, R.A., Scheres, S.H.W., Goedert, M.
PDB entry 8q97: Tau - CTE-MIA9 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q98: Tau - CTE-MIA8 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.75 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q99: Tau - CTE-MIA10 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9a: Tau - CTE-MIA11 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9b: Tau - CTE-MIA13 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9c: Tau - CTE-MIA14 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9d: Tau - CTE-MIA15 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9e: Tau - CTE-MIA18 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9f: Tau - CTE-LIA3 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.91 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9g: Tau - CTE-LIA5 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9h: Tau - CTE-LIA4 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9i: Tau - CTE-LIA6 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9j: Tau - CTE-LIA7 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9k: Tau - CTE-LIA13 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9l: Tau - CTE-LIA14 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9m: Tau - CTE-type I (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9n: Crystal Structure of the MADS-box/MEF2 Domain of MEF2D bound to dsDNA and MITR deacetylase binding motif mutant L151V.
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-08-20
Authors: Chinellato, M., Carli, A., Perin, S., Mazzocato, Y., Biondi, B., Di Giorgio, E., Brancolini, C., Angelini, A., Cendron, L.
PDB entry 8q9o: CTE tau intermediate amyloid (LIA-17)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-20
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q9p: Crystal Structure of the MADS-box/MEF2 Domain of MEF2D bound to dsDNA and HDAC5 deacetylase binding motif
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-20
Authors: Chinellato, M., Carli, A., Perin, S., Mazzocato, Y., Biondi, B., Di Giorgio, E., Brancolini, C., Angelini, A., Cendron, L.
PDB entry 8q9q: Crystal Structure of the MADS-box/MEF2 Domain of MEF2D bound to dsDNA and HDAC7 deacetylase binding motif
Classification: TRANSCRIPTION
Source organism: DNA molecule; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-08-20
Authors: Chinellato, M., Carli, A., Perin, S., Mazzocato, Y., Biondi, B., Di Giorgio, E., Brancolini, C., Angelini, A., Cendron, L.
PDB entry 8q9r: Crystal structure of MADS-box/MEF2D N-terminal domain bound to dsDNA and HDAC9 deacetylase binding motif
Classification: TRANSCRIPTION
Source organism: DNA molecule; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-08-20
Authors: Chinellato, M., Carli, A., Perin, S., Mazzoccato, Y., Di Giorgio, E., Brancolini, C., Angelini, A., Cendron, L.
PDB entry 8q9s: STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA'; CSNK2A2 GENE PRODUCT) IN COMPLEX WITH THE INHIBITOR SGC-CK2-1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.352 Å
Deposited: 2023-08-21
Authors: Werner, C., Lindenblatt, D., Niefind, K.
PDB entry 8q9t: CryoEM structure of a S. Cerevisiae Ski238 complex bound to RNA
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-08-21
Authors: Keidel, A., Koegel, A., Reichelt, P., Kowalinski, E., Schaefer, I.B., Conti, E.
PDB entry 8q9u: S-methylthiourocanate hydratase, variant R450A, from Variovorax sp. RA8 in complex with NAD+
Classification: LYASE
Source organism: Variovorax sp. RA8
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-21
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8q9v: S-methylthiourocanate hydratase from Variovorax sp. RA8 in complex with NAD+ and imidazolone propionate
Classification: OXIDOREDUCTASE
Source organism: Variovorax sp. RA8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-21
Authors: Vasseur, C.M., Seebeck, F.P.
PDB entry 8q9w: Crystal structure of HsRNMT complexed with sinefungin and GMP-PnP
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-21
Authors: Petit, A.P., Fyfe, P.K.
PDB entry 8q9x: The structure of thiocyanate dehydrogenase from Pelomicrobium methylotrophicum with molecular oxygen at 1.05 A resolution
Classification: OXIDOREDUCTASE
Source organism: Pelomicrobium methylotrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2023-08-22
Authors: Varfolomeeva, L.A., Polyakov, K.M., Shipkov, N.S., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8q9y: The structure of thiocyanate dehydrogenase from Pelomicrobium methylotrophicum in complex with inhibitor thiourea at 1.10 A resolution
Classification: OXIDOREDUCTASE
Source organism: Pelomicrobium methylotrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-08-22
Authors: Varfolomeeva, L.A., Polyakov, K.M., Shipkov, N.S., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8q9z: Cryo-EM structure of Cx26 gap junction K125E mutant in bicarbonate buffer (classification on hemichannel)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-08-22
Authors: Brotherton, D.H., Cameron, A.D.
PDB entry 8qa0: Cryo-EM structure of Cx26 solubilised in LMNG - hemichannel classification - NConst conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-08-22
Authors: Brotherton, D.H., Cameron, A.D.
PDB entry 8qa1: Cryo-EM structure of Cx26 solubilised in LMNG - Hemichannel classification NFlex conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-08-22
Authors: Brotherton, D.H., Cameron, A.D.
PDB entry 8qa2: Cryo-EM structure of Cx26 solubilised in LMNG: classification on subunit A; Nconst-mon conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-08-22
Authors: Brotherton, D.H., Cameron, A.D.
PDB entry 8qa3: Cryo-EM structure of Cx26 solubilised in LMNG: classification on subunit A; NFlex conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-08-22
Authors: Brotherton, D.H., Cameron, A.D.
PDB entry 8qa4: MTHFR + SAH symmetric dis-inhibited state
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-22
Authors: Blomgren, L.K.M., Yue, W.W., Froese, D.S., McCorvie, T.J.
PDB entry 8qa5: MTHFR + SAH asymmetric dis-inhibited state
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-08-22
Authors: Blomgren, L.K.M., Yue, W.W., Froese, D.S., McCorvie, T.J.
PDB entry 8qa6: MTHFR + SAM inhibited state
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-08-22
Authors: Blomgren, L.K.M., Yue, W.W., Froese, D.S., McCorvie, T.J.
PDB entry 8qa7: Crystal structure of HDAC6 catalytic domain 2 from zebrafish in complex with buffer component.
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-08-22
Authors: Sandmark, J., Ek, M.
PDB entry 8qa8: Crystal structure of the C-terminally truncated transcriptional repressor protein KorB from the RK2 plasmid complexed with CTP-gamma-S
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-22
Authors: McLean, T.C., Mundy, J.E.A., Lawson, D.M., Le, T.B.K.
PDB entry 8qa9: Crystal structure of the RK2 plasmid encoded co-complex of the C-terminally truncated transcriptional repressor protein KorB complexed with the partner repressor protein KorA bound to OA-DNA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-22
Authors: McLean, T.C., Mundy, J.E.A., Lawson, D.M., Le, T.B.K.
PDB entry 8qaa: X-ray crystal structure of a de novo designed antiparallel coiled-coil 6-helix bundle with 4 heptad repeats, antiparallel 6-helix bundle-ALIA
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-08-22
Authors: Albanese, K.I., Petrenas, R., Woolfson, D.N.
PDB entry 8qab: X-ray crystal structure of a de novo designed antiparallel coiled-coil hexameric alpha-helical barrel with 4 heptad repeats, apCCHex
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-22
Authors: Naudin, E.N., Albanese, K.I., Petrenas, R., Woolfson, D.N.
PDB entry 8qac: X-ray crystal structure of a de novo designed antiparallel coiled-coil 8-helix bundle with 4 heptad repeats, antiparallel 8-helix bundle-GLIA
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-22
Authors: Albanese, K.I., Dawson, W.M., Petrenas, R., Woolfson, D.N.
PDB entry 8qad: X-ray crystal structure of a de novo designed single-chain antiparallel 6-helix coiled-coil alpha-helical barrel, sc-apCC-6-LLIA
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-08-22
Authors: Albanese, K.I., Petrenas, R., Woolfson, D.N.
PDB entry 8qae: X-ray crystal structure of a de novo designed single-chain antiparallel 6-helix alpha-helical barrel, sc-apCC-6-SLLA
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-22
Authors: Albanese, K.I., Petrenas, R., Woolfson, D.N.
PDB entry 8qaf: X-ray crystal structure of a de novo designed single-chain antiparallel 8-helix coiled-coil alpha-helical barrel, sc-apCC-8
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-22
Authors: Albanese, K.I., Petrenas, R., Woolfson, D.N.
PDB entry 8qag: X-ray crystal structure of a de novo designed single-chain parallel coiled-coil alpha-helical barrel with 6 inner helices, sc-CC-6-95
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-22
Authors: Petrenas, R., Albanese, K.I., Woolfson, D.N.
PDB entry 8qah: X-ray crystal structure of a de novo designed single-chain parallel coiled-coil alpha-helical barrel with 8 inner helices, sc-CC-8-58
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-08-22
Authors: Petrenas, R., Albanese, K.I., Woolfson, D.N.
PDB entry 8qai: X-ray crystal structure of a de novo designed single-chain parallel coiled-coil alpha-helical barrel with 7 inner helices, sc-CC-7-LI
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-22
Authors: Petrenas, R., Albanese, K.I., Woolfson, D.N.
PDB entry 8qaj: NMR solution structure of C-terminal domain of CDNF
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-08-22
Authors: Tossavainen, H., Permi, P.
PDB entry 8qak: Dispersin from Terribacillus saccharophilus DispTs3
Classification: HYDROLASE
Source organism: Terribacillus saccharophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-08-22
Authors: Males, A., Moroz, O.V., Blagova, E., Munch, A., Hansen, G.H., Johansen, A.H., Ostergaard, L.H., Segura, D.R., Eddenden, A., Due, A.V., Gudmand, M., Salomon, J., Sorensen, S.R., Cairo, J.L.F., Pache, R.A., Vejborg, R.M., Davies, G.J., Wilson, K.S.
PDB entry 8qal: Crystal Structure of the first bromodomain of BRD4 in complex with acetyl-pyrrole derivative compound 83
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-08-23
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8qam: vaccinia virus Uracil DNA glycosidase mutant I197K-V200E-L204K
Classification: HYDROLASE
Source organism: Vaccinia virus Copenhagen
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-08-23
Authors: Tarbouriech, N., Burmeister, W.P.
PDB entry 8qan: Crystal Structure of the first bromodomain of BRD4 in complex with acetyl-pyrrole derivative compound 79
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-08-23
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8qao: Crystal structure of TP901-1 CI-NTD89 repressor N-terminal domain
Classification: DNA BINDING PROTEIN
Source organism: Lactococcus phage TP901-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2023-08-23
Authors: Huang, Z., Hamad, G.M., Lo Leggio, L., Varming, A.K.
PDB entry 8qap: Crystal Structure of the first bromodomain of BRD4 in complex with acetyl-pyrrole derivative compound 2
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-23
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8qaq: Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. Conformation 1 of omphalotin A in apolar solvents.
Classification: UNKNOWN FUNCTION
Source organism: Omphalotus olearius
Experimental method: SOLUTION NMR
Deposited: 2023-08-23
Authors: Ruedisser, S.H., Matabaro, E., Sonderegger, L., Guentert, P., Kuenzler, M., Gossert, A.D.
PDB entry 8qar: Crystal Structure of the first bromodomain of BRD4 in complex with acetyl-pyrrole derivative compound 98
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-08-23
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8qas: Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. NMR structure of Omphalotin A in methanol / water indoleOut conformation.
Classification: UNKNOWN FUNCTION
Source organism: Omphalotus olearius
Experimental method: SOLUTION NMR
Deposited: 2023-08-23
Authors: Ruedisser, S.H., Matabaro, E., Sonderegger, L., Guentert, P., Kuenzler, M., Gossert, A.D.
PDB entry 8qat: Cryo-EM structure of Fts-Hook3-FHIP1B at 3.2 A resolution.
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-23
Authors: Abid Ali, F., Carter, A.P.
PDB entry 8qau: Outer kinetochore Ndc80-Dam1 alpha/beta-tubulin complex
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2023-08-23
Authors: Muir, K.W., Barford, D.
PDB entry 8qav: Medicago truncatula HISN5 (IGPD) in complex with MN and IG2
Classification: LYASE
Source organism: Medicago truncatula
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.23 Å
Deposited: 2023-08-23
Authors: Witek, W., Ruszkowski, M.
PDB entry 8qaw: Medicago truncatula HISN5 (IGPD) in complex with MN, IMD, EDO, FMT, GOL and TRS
Classification: LYASE
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-08-23
Authors: Witek, W., Ruszkowski, M.
PDB entry 8qax: Medicago truncatula HISN5 (IGPD) in complex with MN, FMT, GOL and TRS
Classification: LYASE
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-08-23
Authors: Witek, W., Ruszkowski, M.
PDB entry 8qay: Medicago truncatula HISN5 (IGPD) in complex with MN, FMT, ACT, CIT, EDO, SO4
Classification: LYASE
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-23
Authors: Witek, W., Ruszkowski, M.
PDB entry 8qaz: Crystal Structure of BRPF1 bromodomain in complex with acetyl-pyrrole derivative compound 3
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-23
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8qb0: Crystal Structure of BRPF1 bromodomain in complex with acetyl-pyrrole derivative compound 2
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-08-23
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8qb1: C-terminal domain of mirolase from Tannerella forsythia
Classification: PROTEIN TRANSPORT
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2023-08-23
Authors: Gomis-Ruth, F.X., Rodriguez-Banqueri, A., Mizgalska, D., Veillard, F., Goulas, T., Eckhard, U., Potempa, J.
PDB entry 8qb2: Crystal Structure of BRPF1 bromodomain in complex with acetyl-pyrrole derivative compound 79
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-08-24
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8qb3: ADDobody zinc containing condition
Classification: VIRAL PROTEIN
Source organism: Human adenovirus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-08-24
Authors: Buzas, D., Toelzer, C., Berger, I., Schaffitzel, C.
PDB entry 8qb4: Crystal structure of apo-GltTk obtained with in meso crystallization (H32 space group)
Classification: MEMBRANE PROTEIN
Source organism: Thermococcus kodakarensis KOD1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-24
Authors: Marin, E., Guskov, A., Borshchevskiy, V., Kovalev, K.
PDB entry 8qb5: Crystal structure of apo-GltTk obtained with in meso crystallization (P6322 space group)
Classification: MEMBRANE PROTEIN
Source organism: Thermococcus kodakarensis KOD1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-08-24
Authors: Marin, E., Guskov, A., Borshchevskiy, V., Kovalev, K.
PDB entry 8qb6: Dispersin from Terribacillus saccharophilus DispTs2
Classification: HYDROLASE
Source organism: Terribacillus saccharophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-08-24
Authors: Males, A., Moroz, O.V., Blagova, E., Munch, A., Hansen, G.H., Johansen, A.H., Ostergaard, L.H., Segura, D.R., Eddenden, A., Due, A.V., Gudmand, M., Salomon, J., Sorensen, S.R., Cairo, J.L.F., Pache, R.A., Vejborg, R.M., Davies, G.J., Wilson, K.S.
PDB entry 8qb7: Pil1 in native eisosome lattice bound to plasma membrane microdomain
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-24
Authors: Kefauver, J.M., Zou, L., Loewith, R.J., Desfosses, A.
PDB entry 8qb8: Lsp1 in native eisosome lattice bound to plasma membrane microdomain
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-24
Authors: Kefauver, J.M., Zou, L., Loewith, R.J., Desfosses, A.
PDB entry 8qb9: Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture -PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol 30:20:20:30)
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-08-24
Authors: Kefauver, J.M., Zou, L., Desfosses, A., Loewith, R.J.
PDB entry 8qba: Sperm whale myoblogin mutant H64V V68A in complex with glycine ethyl ester
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2023-08-24
Authors: Tinzl, M., Mittl, P.R.E., Hilvert, D.
PDB entry 8qbb: Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/-sterol (DOPC, DOPE, DOPS, PI(4,5)P2 50:20:20:10)
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2023-08-24
Authors: Kefauver, J.M., Zou, L., Desfosses, A., Loewith, R.J.
PDB entry 8qbc: Reactive amide intermediate in sperm whale myoglobin mutant H64V V68A
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-08-24
Authors: Tinzl, M., Mittl, P.R.E., Hilvert, D.
PDB entry 8qbd: Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol, PI(4,5)P2 35:20:20:15:10)
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2023-08-24
Authors: Kefauver, J.M., Zou, L., Desfosses, A., Loewith, R.J.
PDB entry 8qbe: Compact state - Pil1 in native eisosome lattice bound to plasma membrane microdomain
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-08-24
Authors: Kefauver, J.M., Zou, L., Desfosses, A., Loewith, R.J.
PDB entry 8qbf: Compact state - Pil1 dimer with lipid headgroups fitted in native eisosome lattice bound to plasma membrane microdomain
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-08-24
Authors: Kefauver, J.M., Zou, L., Desfosses, A., Loewith, R.J.
PDB entry 8qbg: Stretched state - Pil1 in native eisosome lattice bound to plasma membrane microdomain
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2023-08-24
Authors: Kefauver, J.M., Zou, L., Desfosses, A., Loewith, R.J.
PDB entry 8qbh: AntI in complex with 1-Naphthol
Classification: LYASE
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-08-24
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qbi: AntI in closed state
Classification: LYASE
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-08-24
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qbj: Structure of mBaoJin at pH 4.6
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-24
Authors: Samygina, V.R., Vlaskina, A.V., Gabdulkhakov, A., Subach, O.M., Subach, F.V.
PDB entry 8qbk: Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-08-24
Authors: Carabias del Rey, A., Montoya, G.
PDB entry 8qbl: Retron-Eco1 filament with inactive effector (E106A, 2 segments)
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-08-24
Authors: Carabias del Rey, A., Montoya, G.
PDB entry 8qbm: Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2023-08-24
Authors: Carabias del Rey, A., Montoya, G.
PDB entry 8qbn: Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to YPEL5
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-24
Authors: Chrustowicz, J., Sherpa, D., Schulman, B.A.
PDB entry 8qbp: Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. NMR structure of Omphalotin A in methanol / water indoleOut conformation.
Classification: UNKNOWN FUNCTION
Source organism: Omphalotus olearius
Experimental method: SOLUTION NMR
Deposited: 2023-08-25
Authors: Ruedisser, S.H., Matabaro, E., Sonderegger, L., Guentert, P., Kuenzler, M., Gossert, A.D.
PDB entry 8qbq: Crystal structure of the outer membrane decaheme cytochrome MtrC (A430Boc-Lys)
Classification: ELECTRON TRANSPORT
Source organism: Shewanella oneidensis MR-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-08-25
Authors: Nash, B.W., Lockwood, C.J., Whiting, K., Butt, J.N., Clarke, T.A., Edwards, M.J.
PDB entry 8qbr: Cryo-EM structure of Vipp1 helical filament with lattice 1 (Vipp1_L1)
Classification: LIPID BINDING PROTEIN
Source organism: Nostoc punctiforme
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2023-08-25
Authors: Naskar, S., Low, H.H.
PDB entry 8qbs: Cryo-EM structure of Vipp1-F197K/L200K helical filament with lattice 1 (Vipp1-F197K/L200K_L1)
Classification: LIPID BINDING PROTEIN
Source organism: Nostoc punctiforme
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-08-25
Authors: Naskar, S., Low, H.H.
PDB entry 8qbt: E. coli ApdP-stalled ribosomal complex
Classification: RIBOSOME
Source organism: Escherichia coli BW25113; Sinorhizobium medicae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-08-25
Authors: Morici, M., Wilson, D.N.
PDB entry 8qbu: STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA'; CSNK2A2 GENE PRODUCT) IN COMPLEX WITH THE INHIBITOR CX-4945 AND THE ALPHA-D-POCKET LIGAND 3,4-DICHLORO PHENETHYLAMINE (DPA)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.09 Å
Deposited: 2023-08-25
Authors: Werner, C., Niefind, K.
PDB entry 8qbv: Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 2 (Vipp1-deltaH6_L2)
Classification: LIPID BINDING PROTEIN
Source organism: Nostoc punctiforme
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2023-08-25
Authors: Naskar, S., Low, H.H.
PDB entry 8qbw: Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 3 (Vipp1-deltaH6_L3)
Classification: LIPID BINDING PROTEIN
Source organism: Nostoc punctiforme
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-08-25
Authors: Naskar, S., Low, H.H.
PDB entry 8qbx: Chimeric Adenovirus-derived dodecamer
Classification: VIRUS LIKE PARTICLE
Source organism: Human adenovirus sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-08-25
Authors: Buzas, D., Borucu, U., Bufton, J., Kapadalakere, S.Y., Toelzer, C.
PDB entry 8qby: Respiratory complex I from Paracoccus denitrificans in MSP2N2 nanodiscs
Classification: OXIDOREDUCTASE
Source organism: Paracoccus denitrificans PD1222
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-08-25
Authors: Ivanov, B.S., Bridges, H.R., Hirst, J.
PDB entry 8qbz: Crystal structure of the outer membrane decaheme cytochrome MtrC (E344Boc-Lys)
Classification: ELECTRON TRANSPORT
Source organism: Shewanella oneidensis MR-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-25
Authors: Edwards, M.J., Lockwood, C.J., Whiting, K., Nash, B.W., Butt, J.N., Clarke, T.A.
PDB entry 8qc0: Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT ribosylated
Classification: TRANSFERASE
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-08-25
Authors: Tang, P., Harding, C.J., Czekster, C.M.
PDB entry 8qc1: Respiratory complex I from Paracoccus denitrificans in MSP2N2 nanodiscs (ND4 & ND5 focus refinement)
Classification: OXIDOREDUCTASE
Source organism: Paracoccus denitrificans PD1222
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-08-25
Authors: Ivanov, B.S., Bridges, H.R., Hirst, J.
PDB entry 8qc2: Crystal structure of NAD-dependent glycoside hydrolase from Flavobacterium sp. (strain K172) in complex with co-factor NAD+ and sulfoquinovose (SQ)
Classification: HYDROLASE
Source organism: Paenarthrobacter ureafaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-25
Authors: Pickles, I.B., Sharma, M., Davies, G.J.
PDB entry 8qc3: Crystal structure of oxidoreductive sulfoquinovosidase from Arthrobacter sp. U41 (ArSqgA)in complex with co-factor NAD+
Classification: HYDROLASE
Source organism: Arthrobacter sp. U41
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-08-25
Authors: Sharma, M., Davies, G.J.
PDB entry 8qc4: M. tuberculosis salicylate synthase MbtI in complex with 5-(3-carboxyphenyl)furan-2-carboxylic acid
Classification: LYASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.578 Å
Deposited: 2023-08-25
Authors: Mori, M., Villa, S., Meneghetti, F., Bellinzoni, M.
PDB entry 8qc5: crystal structure of NAD-dependent glycoside hydrolase from Arthrobacter sp. U41 in complex with NAD+ cofactor and citrate
Classification: HYDROLASE
Source organism: Arthrobacter sp. U41
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-08-25
Authors: Sharma, M., Davies, G.J.
PDB entry 8qc6: Crystal Structure of NAD-dependent glycoside hydrolase from Arthrobacter sp. U41 in complex with NAD+ and sulfoquinovose (SQ)
Classification: HYDROLASE
Source organism: Arthrobacter sp. U41
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-08-25
Authors: Sharma, M., Davies, G.J.
PDB entry 8qc7: New monoclinic EcIspE
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-08-25
Authors: Hamid, R.
PDB entry 8qc8: Crystal structure of NAD-dependent glycoside hydrolase from Flavobacterium sp. (strain K172) in complex with co-factor NAD+
Classification: HYDROLASE
Source organism: Paenarthrobacter ureafaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-08-25
Authors: Pickles, I.B., Sharma, M., Davies, G.J.
PDB entry 8qc9: Crystal structure of the outer membrane decaheme cytochrome MtrC (A293Boc-Lys)
Classification: ELECTRON TRANSPORT
Source organism: Shewanella oneidensis MR-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-25
Authors: Nash, B.W., Lockwood, C.J., Edwards, M.J., Whiting, K., Butt, J.N., Clarke, T.A.
PDB entry 8qca: CryoEM structure of a S. Cerevisiae Ski2387 complex in the closed state bound to RNA
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-08-25
Authors: Keidel, A., Koegel, A., Reichelt, P., Kowalinski, E., Schaefer, I.B., Conti, E.
PDB entry 8qcb: CryoEM structure of a S. Cerevisiae Ski2387 complex in the open state
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-25
Authors: Keidel, A., Koegel, A., Reichelt, P., Kowalinski, E., Schaefer, I.B., Conti, E.
PDB entry 8qcc: E.coli IspE in complex with a ligand (1)
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-25
Authors: Hamid, R.
PDB entry 8qcd: STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA'; CSNK2A2 GENE PRODUCT) IN COMPLEX WITH THE INHIBITOR 4,5,6,7-TETRABROMOBENZOTRIAZOLE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2023-08-25
Authors: Werner, C., Niefind, K.
PDB entry 8qce: Dispersin from Lactiplantibacillus paraplantarum DispLp
Classification: HYDROLASE
Source organism: Lactiplantibacillus paraplantarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2023-08-25
Authors: Males, A., Moroz, O.V., Blagova, E., Munch, A., Hansen, G.H., Johansen, A.H., Ostergaard, L.H., Segura, D.R., Eddenden, A., Due, A.V., Gudmand, M., Salomon, J., Sorensen, S.R., Cairo, J.L.F., Pache, R.A., Vejborg, R.M., Davies, G.J., Wilson, K.S.
PDB entry 8qcf: yeast cytoplasmic exosome-Ski2 complex degrading a RNA substrate
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2023-08-25
Authors: Keidel, A., Koegel, A., Reichelt, P., Kowalinski, E., Schaefer, I.B., Conti, E.
PDB entry 8qcg: STRUCTURE OF THE CATALYTIC SUBUNIT OF PROTEIN KINASE CK2 (CK2ALPHA') IN COMPLEX WITH THE NON-HYDROLYZABLE ATP ANALOGUE AMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2023-08-25
Authors: Werner, C., Lindenblatt, D., Niefind, K.
PDB entry 8qch: Human Adenosine deaminase-like protein in complex with compound AT8001
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.442 Å
Deposited: 2023-08-26
Authors: Zimberger, C., canard, B., Ferron, F.
PDB entry 8qci: FCGBP D10 Assembly Segment
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-27
Authors: Yeshaya, N., Fass, D.
PDB entry 8qcj: Crystal structure of mycothiol disulfide reductase Mtr from Rhodococcus erythropolis
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus erythropolis PR4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-08-27
Authors: Gutierrez-Fernandez, J., Hammerstad, M., Hersleth, H.-P.
PDB entry 8qck: Crystal structure of mycothiol disulfide reductase Mtr from Mycobacterium smegmatis
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 4.7 Å
Deposited: 2023-08-27
Authors: Gutierrez-Fernandez, J., Hammerstad, M., Hersleth, H.-P.
PDB entry 8qcl: A carbohydrate esterase family 15 (CE15) glucuronoyl esterase from Phocaeicola vulgatus ATCC 8482
Classification: HYDROLASE
Source organism: Phocaeicola vulgatus ATCC 8482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-08-27
Authors: Banerjee, S., Poulsen, J.N., Mazurkewich, S., Seveso, A., Larsbrink, J., Lo Leggio, L.
PDB entry 8qcm: ABCG2 in complex with MZ82 and 5D3 Fab
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2023-08-27
Authors: Yu, Q., Kowal, J., Ni, D., Stahlberg, H., Tajkhorshid, E., Altmann, K.H., Locher, K.P.
PDB entry 8qcn: E.coli IspE in complex with a ligand (2)
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-08-27
Authors: Hamid, R.
PDB entry 8qco: E.coli IspE in complex with a ligand (3)
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-08-28
Authors: Hamid, R.
PDB entry 8qcp: Tau - AD-LIA8 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-08-28
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8qcq: B. subtilis ApdA-stalled ribosomal complex
Classification: RIBOSOME
Source organism: Amycolatopsis japonica; Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-08-28
Authors: Morici, M., Wilson, D.N.
PDB entry 8qcr: Tau - CTE-MIA12 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-08-28
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8qcs: Cryo-EM structure of the inward-facing FLVCR1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-28
Authors: Weng, T.-H., Wu, D., Safarian, S.
PDB entry 8qct: Cryo-EM structure of the inward-facing choline-bound FLVCR1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-28
Authors: Weng, T.-H., Wu, D., Safarian, S.
PDB entry 8qcu: Lysozyme covalently bound to fac-[Re(CO)3-imidazole] complex, incubated for 38 weeks.
Classification: ANTIMICROBIAL PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-08-28
Authors: Jacobs, F.J.F., Brink, A., Helliwell, J.R.
PDB entry 8qcw: The crystal structure of the truncated form of Lotus japonicus kinase 1
Classification: TRANSFERASE
Source organism: Lotus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-08-28
Authors: Leonidas, D.D., Solovou, T.
PDB entry 8qcx: Cryo-EM structure of the inward-facing FLVCR2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-28
Authors: Weng, T.-H., Wu, D., Safarian, S.
PDB entry 8qcy: Cryo-EM structure of the outward-facing FLVCR2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-28
Authors: Weng, T.-H., Wu, D., Safarian, S.
PDB entry 8qcz: Cryo-EM structure of the outward-facing heme-bound FLVCR2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-28
Authors: Weng, T.-H., Wu, D., Safarian, S.
PDB entry 8qd0: Cryo-EM structure of the inward-facing choline-bound FLVCR2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-28
Authors: Weng, T.-H., Wu, D., Safarian, S.
PDB entry 8qd1: Ayg1p from A. fumigatus catalyzes polyketide shortening in the biosynthesis of DHN-melanin
Classification: LYASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qd2: Ayg1p in complex with 1,3-Dihydroxynaphthalene
Classification: LYASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qd3: Ayg1p in complex with 1,3,6,8-Tetrahydroxynaphthalene
Classification: LYASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qd4: Ayg1p active site converted to tetrahedral sulfonate ester
Classification: LYASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qd5: AntI Ser245DHA (PSF)
Classification: LYASE
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.
PDB entry 8qd6: AntI Ser245DHA (PMSF)
Classification: LYASE
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-28
Authors: Schmalhofer, M., Vagstad, A.L., Zhou, Q., Bode, H.B., Groll, M.