LiteFold/PDB huggingface dataset:
PDB entry 2dyi: Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8
Classification: RIBOSOME
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-09-14
Authors: Kawazoe, M., Takemoto, C., Kaminishi, T., Tatsuguchi, A., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dyj: Crystal structure of ribosome-binding factor A from Thermus thermophilus HB8
Classification: RIBOSOMAL PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2006-09-14
Authors: Kawazoe, M., Takemoto, C., Nakayama-Ushikoshi, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dyk: Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8
Classification: RIBOSOME
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2006-09-14
Authors: Kawazoe, M., Takemoto, C., Fusatomi, E., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dyl: Crystal structure of human mitogen-activated protein kinase kinase 7 activated mutant (S287D, T291D)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2006-09-15
Authors: Kukimoto-Niino, M., Takagi, T., Kaminishi, T., Uchikubo-Kamo, T., Terada, T., Matsuzaki, O., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dym: The crystal structure of Saccharomyces cerevisiae Atg5- Atg16(1-46) complex
Classification: PROTEIN TURNOVER/PROTEIN TURNOVER
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-09-15
Authors: Matsushita, M., Suzuki, N.N., Inagaki, F.
PDB entry 2dyn: DYNAMIN (PLECKSTRIN HOMOLOGY DOMAIN) (DYNPH)
Classification: SIGNAL TRANSDUCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1997-07-21
Authors: Timm, D.E.
PDB entry 2dyo: The crystal structure of Saccharomyces cerevisiae Atg5- Atg16(1-57) complex
Classification: PROTEIN TURNOVER/PROTEIN TURNOVER
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2006-09-15
Authors: Matsushita, M., Suzuki, N.N., Inagaki, F.
PDB entry 2dyp: Crystal Structure of LILRB2(LIR2/ILT4/CD85d) complexed with HLA-G
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-09-15
Authors: Shiroishi, M., Kuroki, K., Rasubala, L., Kohda, D., Maenaka, K.
PDB entry 2dyq: Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2006-09-16
Authors: Nishino, A., Saijo, S., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dyr: Bovine heart cytochrome C oxidase at the fully oxidized state
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-09-16
Authors: Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Kurauchi, T., Mizushima, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 2dys: Bovine heart cytochrome C oxidase modified by DCCD
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-09-16
Authors: Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Kurauchi, T., Mizushima, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 2dyt: The crystal structure of Saccharomyces cerevisiae Atg3
Classification: LIGASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-09-17
Authors: Yamada, Y., Suzuki, N.N., Inagaki, F.
PDB entry 2dyu: Helicobacter pylori formamidase AmiF contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Classification: HYDROLASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2006-09-18
Authors: Wang, W.C., Hung, C.L.
PDB entry 2dyv: Helicobacter pylori formamidase AmiF contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Classification: HYDROLASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-09-18
Authors: Wang, W.C., Hung, C.L.
PDB entry 2dyw: A Backbone binding DNA complex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2006-09-18
Authors: Komeda, S., Moulaei, T., Woods, K.K., Chikuma, M., Farrell, N.P., Williams, L.D.
PDB entry 2dyx: Structure of the complex of lactoferrin C-lobe with melibiose at 2.0 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-09-19
Authors: Mir, R., Prem kumar, R., Sinha, M., Singh, N., Sharma, S., Kaur, P., Bhushan, A., Singh, T.P.
PDB entry 2dyy: Crystal structure of putative translation initiation inhibitor PH0854 from Pyrococcus horikoshii
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-09-19
Authors: Ihsanawati, Kishishita, S., Murayama, K., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dz7: DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-09-21
Authors: Sato, Y., Mitomi, K., Sumani, T., Kondo, J., Takenaka, A.
PDB entry 2dz9: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with biotinyl-5'-AMP, Mutation D104A
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2006-09-26
Authors: Bagautdinov, B., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dza: Crystal Structure of Dihydropteroate Synthase from Thermus thermophilus HB8 in Complex with 4-aminobenzoate
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-09-27
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzb: Crystal Structure of Dihydropteroate Synthase from Thermus thermophilus HB8 in complex with 6HMPPP
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-09-27
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzc: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii, Mutation R48A
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2006-09-27
Authors: Bagautdinov, B., Taketa, M., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzd: Crystal structure of the biotin carboxylase domain of pyruvate carboxylase
Classification: LIGASE
Source organism: Geobacillus thermodenitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-09-27
Authors: Kondo, S., Nakajima, Y., Sugio, S., Sueda, S., Islam, M.N., Kondo, H.
PDB entry 2dze: Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3
Classification: CHAPERONE
Source organism: Schizosaccharomyces pombe; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-09-28
Authors: Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzi: 2DZI/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Ubiquitin-like Protein 4A (GDX)
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-09-29
Authors: Zhao, C., Sato, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzj: 2DZJ/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Synaptic Glycoprotein SC2
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-09-29
Authors: Zhao, C., Yoneyama, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzk: Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2006-09-29
Authors: Zhao, C., Yoneyama, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzl: Solution Structure of the UBA domain in Human Protein FAM100B
Classification: Structural Genomics Unknown Function
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-09-29
Authors: Zhao, C., Sato, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzm: Solution Structure of the Ubiquitin-like Domain in Human FAS-associated factor 1 (hFAF1)
Classification: Structural Genomics Unknown Function
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-09-29
Authors: Zhao, C., Sato, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzn: Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-09-29
Authors: Yokoyama, S., Padmanabhan, B., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzo: Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-09-29
Authors: Nakamura, Y., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzp: Structure of mutant tryptophan synthase alpha-subunit (D17N) from a hyperthermophile, Pyrococcus furiosus
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-09-30
Authors: Ogasahara, K., Yamagata, Y., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzq: Solution Structure of RSGI RUH-066, a GTF2I domain in human cDNA
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-09-30
Authors: Doi-Katayama, Y., Hirota, H., Tomizawa, T., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzr: Solution Structure of RSGI RUH-067, a GTF2I domain in human cDNA
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-09-30
Authors: Doi-Katayama, Y., Hirota, H., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzs: Structure of mutant tryptophan synthase alpha-subunit (E103A) from a hyperthermophile, Pyrococcus furiosus
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-09-30
Authors: Ogasahara, K., Yamagata, Y., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzt: Structure of mutant tryptophan synthase alpha-subunit (D110A) from a hyperthermophile, Pyrococcus furiosus
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-09-30
Authors: Ogasahara, K., Yamagata, Y., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzu: Structure of mutant tryptophan synthase alpha-subunit (D110N) from a hyperthermophile, Pyrococcus furiosus
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2006-09-30
Authors: Ogasahara, K., Yamagata, Y., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzv: Structure of mutant tryptophan synthase alpha-subunit (D146A) from a hyperthermophile, Pyrococcus furiosus
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-09-30
Authors: Ogasahara, K., Yamagata, Y., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzw: Structure of mutant tryptophan synthase alpha-subunit (E244A) from a hyperthermophile, Pyrococcus furiosus
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-09-30
Authors: Ogasahara, K., Yamagata, Y., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzx: Structure of mutant tryptophan synthase alpha-subunit (E131-132A) from a hyperthermophile, Pyrococcus furiosus
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-09-30
Authors: Ogasahara, K., Yamagata, Y., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dzy: Crystal structure of N392A mutant of yeast bleomycin hydrolase
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2006-09-30
Authors: O'Farrell, P.A., Joshua-Tor, L.
PDB entry 2dzz: Crystal structure of N392V mutant of yeast bleomycin hydrolase
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2006-09-30
Authors: O'Farrell, P.A., Joshua-Tor, L.
PDB entry 2e00: Crystal structure of N392L mutant of yeast bleomycin hydrolase
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-10-01
Authors: O'Farrell, P.A., Joshua-Tor, L.
PDB entry 2e01: Crystal structure of H369A mutant of yeast bleomycin hydrolase
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2006-10-01
Authors: O'Farrell, P.A., Joshua-Tor, L.
PDB entry 2e02: Crystal structure of H369L mutant of yeast bleomycin hydrolase
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-10-01
Authors: O'Farrell, P.A., Joshua-Tor, L.
PDB entry 2e03: Crystal structure of NQ67E mutant of yeast bleomycin hydrolase
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2006-10-01
Authors: O'Farrell, P.A., Joshua-Tor, L.
PDB entry 2e07: Crystal structure of Asp79 to Glu mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-10-02
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e08: Crystal structure of Glu140 to Lys mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-10-02
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e09: Structure of mutant tryptophan synthase alpha-subunit (E74A) from a hyperthermophile, Pyrococcus furiosus
Classification: LYASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-10-02
Authors: Ogasahara, K., Yamagata, Y., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e0a: Crystal structure of human pyruvate dehydrogenase kinase 4 in complex with AMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2006-10-03
Authors: Kukimoto-Niino, M., Tokmakov, A., Terada, T., Shiromizu, I., Kawamoto, M., Matsusue, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e0c: crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain7 at 2.0 A resolution
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii str. 7
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-10-06
Authors: Kouyama, T.
PDB entry 2e0g: DnaA N-terminal domain
Classification: REPLICATION
Source organism: Escherichia coli K12
Experimental method: SOLUTION NMR
Deposited: 2006-10-07
Authors: Abe, Y., Katayama, T., Ueda, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e0h: Solution Structure of BmKalphaIT01, an alpha-insect toxin from the Venom of the Chinese Scorpion Buthus martensi Karsch
Classification: TOXIN
Source organism: Mesobuthus martensii
Experimental method: SOLUTION NMR
Deposited: 2006-10-08
Authors: Tong, X.T., Chen, X., Wu, H.M.
PDB entry 2e0i: Crystal structure of archaeal photolyase from Sulfolobus tokodaii with two FAD molecules: Implication of a novel light-harvesting cofactor
Classification: LYASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-10-10
Authors: Fujihashi, M., Numoto, N., Kobayashi, Y., Mizushima, A., Tsujimura, M., Nakamura, A., Kawarabayashi, Y., Miki, K.
PDB entry 2e0j: Mutant Human Ribonuclease 1 (R31L, R32L)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-10-10
Authors: Yamada, H., Tamada, T., Kosaka, M., Kuroki, R.
PDB entry 2e0k: Crystal structure of CbiL, a methyltransferase involved in anaerobic vitamin B12 biosynthesis
Classification: TRANSFERASE
Source organism: Chlorobaculum tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-10-10
Authors: Wada, K., Fukuyama, K.
PDB entry 2e0l: Mutant Human Ribonuclease 1 (Q28L, R31L, R32L)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-10-10
Authors: Yamada, H., Tamada, T., Kosaka, M., Kuroki, R.
PDB entry 2e0m: Mutant Human Ribonuclease 1 (T24L, Q28L, R31L, R32L)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-10-10
Authors: Yamada, H., Tamada, T., Kosaka, M., Kuroki, R.
PDB entry 2e0n: Crystal structure of CbiL in complex with S-adenosylhomocysteine, a methyltransferase involved in anaerobic vitamin B12 biosynthesis
Classification: TRANSFERASE
Source organism: Chlorobaculum tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-10-10
Authors: Wada, K., Fukuyama, K.
PDB entry 2e0o: Mutant Human Ribonuclease 1 (V52L, D53L, N56L, F59L)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-10-10
Authors: Yamada, H., Tamada, T., Kosaka, M., Kuroki, R.
PDB entry 2e0p: The crystal structure of Cel44A
Classification: HYDROLASE
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-10-11
Authors: Kitago, Y., Karita, S., Watanabe, N., Sakka, K., Tanaka, I.
PDB entry 2e0q: Crystal structure of K53E thioredoxin from Sulfolobus tokodaii strain7
Classification: ELECTRON TRANSPORT
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2006-10-11
Authors: Ming, H., Tanokura, M.
PDB entry 2e0s: Carbohydrate recognition of C-terminal half of lactoferrin: Crystal structure of the complex of C-lobe with rhamnose at 2.15 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2006-10-11
Authors: Mir, R., Prem Kumar, R., Singh, N., Sinha, M., Sharma, S., Bhushan, A., Kaur, P., Singh, T.P.
PDB entry 2e0t: Crystal structure of catalytic domain of dual specificity phosphatase 26, MS0830 from Homo sapiens
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2006-10-13
Authors: Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Chen, L., Liu, Z.J., Wang, B.C., Shirozu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e0w: T391A precursor mutant protein of gamma-Glutamyltranspeptidase from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2006-10-16
Authors: Okada, T., Wada, K., Fukuyama, K.
PDB entry 2e0x: Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli (monoclinic form)
Classification: TRANSFERASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2006-10-16
Authors: Okada, T., Wada, K., Fukuyama, K.
PDB entry 2e0y: Crystal structure of the samarium derivative of mature gamma-glutamyltranspeptidase from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2006-10-16
Authors: Okada, T., Wada, K., Fukuyama, K.
PDB entry 2e0z: Crystal structure of virus-like particle from Pyrococcus furiosus
Classification: VIRUS LIKE PARTICLE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2006-10-16
Authors: Akita, F., Chong, K.T., Tanaka, H., Yamashita, E., Miyazaki, N., Nakaishi, Y., Namba, K., Ono, Y., Suzuki, M., Tsukihara, T., Nakagawa, A.
PDB entry 2e10: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii, Mutation R51A
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2006-10-16
Authors: Bagautdinov, B., Taketa, M., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e11: The Crystal Structure of XC1258 from Xanthomonas campestris: A CN-hydrolase Superfamily Protein with an Arsenic Adduct in the Active Site
Classification: HYDROLASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2006-10-17
Authors: Chin, K.-H., Tsai, Y.-D., Chan, N.-L., Huang, K.-F., Wang, A.H.-J., Chou, S.-H.
PDB entry 2e12: The crystal structure of XC5848 from Xanthomonas campestris adopting a novel variant of Sm-like motif
Classification: TRANSLATION
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-10-17
Authors: Chin, K.-H., Ruan, S.-K., Wang, A.H.-J., Chou, S.-H.
PDB entry 2e15: Crystal structure of Arg173 to Asn mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-10-18
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e16: Crystal structure of Glu140 to Arg mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-10-18
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e17: Crystal structure of Arg173 to Ala mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-10-18
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e18: Crystal structure of project PH0182 from Pyrococcus horikoshii OT3
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-10-18
Authors: Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e19: Solution structure of the homeobox domain from human NIL-2-A zinc finger protein, transcription factor 8
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-10-19
Authors: Ohnishi, S., Tochio, N., Koshiba, S., Harada, T., Watanabe, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e1a: crystal structure of FFRP-DM1
Classification: TRANSCRIPTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-10-19
Authors: Koike, H., Suzuki, M.
PDB entry 2e1b: Crystal structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii
Classification: LIGASE, HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-10-20
Authors: Fukunaga, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e1c: Structure of Putative HTH-type transcriptional regulator PH1519/DNA Complex
Classification: TRANSCRIPTION/DNA
Source organism: Pyrococcus horikoshii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-10-24
Authors: Koike, H., Suzuki, M.
PDB entry 2e1d: Crystal structure of mouse transaldolase
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-10-25
Authors: Kishishita, S., Murayama, K., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e1e: Crystal structure of the HRDC Domain of Human Werner Syndrome Protein, WRN
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-10-25
Authors: Kitano, K., Yoshihara, N., Hakoshima, T.
PDB entry 2e1f: Crystal structure of the HRDC Domain of Human Werner Syndrome Protein, WRN
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-10-25
Authors: Kitano, K., Yoshihara, N., Hakoshima, T.
PDB entry 2e1h: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3, K111G mutation
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-10-25
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e1m: Crystal Structure of L-Glutamate Oxidase from Streptomyces sp. X-119-6
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-10-26
Authors: Sasaki, C., Kashima, A., Sakaguchi, C., Mizuno, H., Arima, J., Kusakabe, H., Tamura, T., Sugio, S., Inagaki, K.
PDB entry 2e1n: Crystal structure of the Cyanobacterium circadian clock modifier Pex
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Synechococcus elongatus PCC 7942
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-10-26
Authors: Arita, K., Shimizu, T.
PDB entry 2e1o: Solution structure of RSGI RUH-028, a homeobox domain from human cDNA
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-10-27
Authors: Nakamura, A., Ohnishi, S., Abe, T., Nameki, N., Tochio, N., Koshiba, S., Kigawa, T., Yokoyama, S., Kawaii, S., Hirota, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e1p: Crystal structure of pro-Tk-subtilisin
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-10-27
Authors: Tanaka, S., Saito, K., Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2e1q: Crystal Structure of Human Xanthine Oxidoreductase mutant, Glu803Val
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-10-27
Authors: Yamaguchi, Y., Matsumura, T., Ichida, K., Okamoto, K., Nishino, T.
PDB entry 2e1r: Structure of eEF2 in complex with a sordarin derivative
Classification: TRANSLATION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2006-10-27
Authors: Soe, R., Mosley, R.T., Andersen, G.R.
PDB entry 2e1s: Crystal structure of the complex of C-terminal half of bovine lactoferrin and arabinose at 2.7 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-10-27
Authors: Mir, R., Prem Kumar, R., Singh, N., Sinha, M., Sharma, S., Kaur, P., Singh, T.P.
PDB entry 2e1t: Crystal structure of Dendranthema morifolium DmAT complexed with malonyl-CoA
Classification: TRANSFERASE
Source organism: Chrysanthemum x morifolium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-10-28
Authors: Unno, H., Ichimaida, F., Kusunoki, M., Nakayama, T.
PDB entry 2e1u: Crystal structure of Dendranthema morifolium DmAT
Classification: TRANSFERASE
Source organism: Chrysanthemum x morifolium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-10-28
Authors: Unno, H., Ichimaida, F., Kusunoki, M., Nakayama, T.
PDB entry 2e1v: Crystal structure of Dendranthema morifolium DmAT, seleno-methionine derivative
Classification: TRANSFERASE
Source organism: Chrysanthemum x morifolium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-10-28
Authors: Unno, H., Ichimaida, F., Kusunoki, M., Nakayama, T.
PDB entry 2e1w: Crystal structure of adenosine deaminase complexed with potent inhibitors
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-10-30
Authors: Kinoshita, T.
PDB entry 2e1x: NMR structure of the HIV-2 nucleocapsid protein
Classification: VIRAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-11-03
Authors: Matsui, T., Kodera, Y., Miyauchi, E., Tanaka, H., Endoh, H., Komatsu, H., Tanaka, T., Kohno, T., Maeda, T.
PDB entry 2e1y: Crystal structure of propionate kinase (TdcD) from Salmonella typhimurium
Classification: TRANSFERASE
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-11-04
Authors: Simanshu, D.K., Savithri, H.S., Murthy, M.R.N.
PDB entry 2e1z: Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with diadenosine tetraphosphate (Ap4A) obtained after co-crystallization with ATP
Classification: TRANSFERASE
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2006-11-04
Authors: Simanshu, D.K., Savithri, H.S., Murthy, M.R.N.
PDB entry 2e20: Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with diadenosine tetraphosphate (Ap4A)
Classification: TRANSFERASE
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-04
Authors: Simanshu, D.K., Savithri, H.S., Murthy, M.R.N.
PDB entry 2e21: Crystal structure of TilS in a complex with AMPPNP from Aquifex aeolicus.
Classification: LIGASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-11-06
Authors: Kuratani, M., Yoshikawa, Y., Sekine, S., Ishii, T., Shibata, R., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e22: Crystal structure of xanthan lyase in complex with mannose
Classification: LYASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-07
Authors: Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 2e24: crystal structure of a mutant (R612A) of xanthan lyase
Classification: LYASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2006-11-07
Authors: Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 2e25: The Crystal Structure of the T109S mutant of E. coli Dihydroorotase complexed with an inhibitor 5-fluoroorotate
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-11-08
Authors: Lee, M., Maher, M.J., Guss, J.M.
PDB entry 2e26: Crystal structure of two repeat fragment of reelin
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-08
Authors: Yasui, N., Nogi, T., Kitao, T., Takagi, J.
PDB entry 2e27: Crystal structure of Fv fragment of anti-ciguatoxin antibody complexed with ABC-ring of ciguatoxin
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-11-08
Authors: Yokota, A., Tanaka, Y., Tsumoto, K.
PDB entry 2e28: Crystal structure analysis of pyruvate kinase from Bacillus stearothermophilus
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-09
Authors: Suzuki, K.
PDB entry 2e29: Solution structure of the GUCT domain from human ATP-dependent RNA helicase DDX50, DEAD box protein 50
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-11-10
Authors: Ohnishi, S., Paakkonen, K., Guntert, P., Sato, M., Koshiba, S., Harada, T., Watanabe, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e2a: ASP81LEU ENZYME IIA FROM THE LACTOSE SPECIFIC PTS FROM LACTOCOCCUS LACTIS
Classification: TRANSFERASE
Source organism: Lactococcus lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1999-05-14
Authors: Sliz, P., Koch, B., Hengstenberg, W., Pai, E.F.
PDB entry 2e2b: Crystal structure of the c-Abl kinase domain in complex with INNO-406
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-11-10
Authors: Horio, T., Hamasaki, T., Wakayama, T., Takagaki, K., Ohgi, T.
PDB entry 2e2c: E2-C, AN UBIQUITIN CONJUGATING ENZYME REQUIRED FOR THE DESTRUCTION OF MITOTIC CYCLINS
Classification: UBIQUITIN CONJUGATION
Source organism: Spisula solidissima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1999-01-19
Authors: Jiang, F., Basavappa, R.
PDB entry 2e2d: Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-11
Authors: Maskos, K., Lang, R., Tschesche, H., Bode, W.
PDB entry 2e2e: TPR domain of NrfG mediates the complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia Coli O157:H7
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2006-11-11
Authors: Han, D., Kim, K., Oh, J., Park, J., Kim, Y.
PDB entry 2e2f: Solution structure of DSP
Classification: ANTIFUNGAL PROTEIN
Source organism: Gastrophysa atrocyanea
Experimental method: SOLUTION NMR
Deposited: 2006-11-12
Authors: Kouno, T., Mizuguchi, M., Suzuki, K., Kawano, K.
PDB entry 2e2g: Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (pre-oxidation form)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-13
Authors: Nakamura, T., Yamamoto, T., Abe, M., Matsumura, H., Hagihara, Y., Goto, T., Yamaguchi, T., Inoue, T.
PDB entry 2e2h: RNA polymerase II elongation complex at 5 mM Mg2+ with GTP
Classification: TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.95 Å
Deposited: 2006-11-14
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2e2i: RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP
Classification: TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2006-11-14
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2e2j: RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP
Classification: TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2006-11-14
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2e2k: Helicobacter pylori formamidase AmiF contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Classification: HYDROLASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-14
Authors: Wang, W.C., Hung, C.L.
PDB entry 2e2l: Helicobacter pylori formamidase AmiF contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Classification: HYDROLASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2006-11-14
Authors: Wang, W.C., Hung, C.L.
PDB entry 2e2m: Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (sulfinic acid form)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-11-14
Authors: Nakamura, T., Yamamoto, T., Abe, M., Matsumura, H., Hagihara, Y., Goto, T., Yamaguchi, T., Inoue, T.
PDB entry 2e2n: Crystal structure of Sulfolobus tokodaii hexokinase in the apo form
Classification: TRANSFERASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-11-15
Authors: Nishimasu, H., Fushinobu, S., Shoun, H., Wakagi, T.
PDB entry 2e2o: Crystal structure of Sulfolobus tokodaii hexokinase in complex with glucose
Classification: TRANSFERASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-11-15
Authors: Nishimasu, H., Fushinobu, S., Shoun, H., Wakagi, T.
PDB entry 2e2p: Crystal structure of Sulfolobus tokodaii hexokinase in complex with ADP
Classification: TRANSFERASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-15
Authors: Nishimasu, H., Fushinobu, S., Shoun, H., Wakagi, T.
PDB entry 2e2q: Crystal structure of Sulfolobus tokodaii hexokinase in complex with xylose, Mg2+, and ADP
Classification: TRANSFERASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-15
Authors: Nishimasu, H., Fushinobu, S., Shoun, H., Wakagi, T.
PDB entry 2e2r: Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol A
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-11-16
Authors: Matsushima, A., Kakuta, Y., Teramoto, T., Koshiba, T., Kimura, M., Shimohigashi, Y.
PDB entry 2e2s: Solution structure of agelenin, an insecticidal peptide from the venom of Agelena opulenta
Classification: TOXIN
Source organism: Allagelena opulenta
Experimental method: SOLUTION NMR
Deposited: 2006-11-17
Authors: Yamaji, N.
PDB entry 2e2t: Substrate Schiff-base analogue of copper amine oxidase from Arthrobacter globiformis formed with phenylhydrazine
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2006-11-17
Authors: Murakawa, T., Okajima, T., Taki, M., Yamamoto, Y., Kuroda, S., Hayashi, H., Tanizawa, K.
PDB entry 2e2u: Substrate Schiff-base analogue of copper amine oxidase from Arthrobacter globiformis formed with 4-hydroxybenzylhydrazine
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2006-11-17
Authors: Murakawa, T., Okajima, T., Taki, M., Yamamoto, Y., Hayashi, H., Tanizawa, K.
PDB entry 2e2v: Substrate Schiff-base analogue of copper amine oxidase from Arthrobacter globiformis formed with benzylhydrazine
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-17
Authors: Murakawa, T., Okajima, T., Taki, M., Yamamoto, Y., Kuroda, S., Hayashi, H., Tanizawa, K.
PDB entry 2e2w: Solution structure of the first BRCT domain of human DNA ligase IV
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-11-17
Authors: Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e2x: Sec14 Homology Module of Neurofibromin in complex with phosphatitylethanolamine
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-18
Authors: D'Angelo, I., Welti, S., Scheffzek, K.
PDB entry 2e2y: Crystal Structure of F43W/H64D/V68I Myoglobin
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-11-18
Authors: Ohki, T., Ueno, T., Hikage, T., Suzuki, A., Yamane, T., Watanabe, Y.
PDB entry 2e2z: Solution NMR structure of yeast Tim15, co-chaperone of mitochondrial Hsp70
Classification: PROTEIN TRANSPORT, CHAPERONE REGULATOR
Source organism: Saccharomyces cerevisiae
Experimental method: SOLUTION NMR
Deposited: 2006-11-19
Authors: Momose, T., Ohshima, C., Maeda, M., Endo, T.
PDB entry 2e30: Solution structure of the cytoplasmic region of Na+/H+ exchanger 1 complexed with essential cofactor calcineurin B homologous protein 1
Classification: METAL BINDING PROTEIN/TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-11-19
Authors: Mishima, M., Wakabayashi, S., Kojima, C.
PDB entry 2e31: Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
Classification: LIGASE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-20
Authors: Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
PDB entry 2e32: Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
Classification: LIGASE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2006-11-20
Authors: Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
PDB entry 2e33: Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
Classification: LIGASE/HYDROLASE
Source organism: Bos taurus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-11-20
Authors: Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
PDB entry 2e34: L11 structure with RDC and RG refinement
Classification: RNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: SOLUTION NMR
Deposited: 2006-11-20
Authors: Lee, D., Walsh, J.D., Yu, P., Markus, M.A., Choli-Papadopoulous, T., Schwieters, C.D., Krueger, S., Draper, D.E., Wang, Y.X.
PDB entry 2e35: the minimized average structure of L11 with rg refinement
Classification: RNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: SOLUTION NMR
Deposited: 2006-11-20
Authors: Lee, D., Walsh, J.D., Yu, P., Markus, M.A., Choli-Papadopoulous, T., Schwieters, C.D., Krueger, S., Draper, D.E., Wang, Y.X.
PDB entry 2e36: L11 with SANS refinement
Classification: RNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: SOLUTION NMR
Deposited: 2006-11-20
Authors: Lee, D., Walsh, J.D., Yu, P., Markus, M.A., Choli-Papadopoulous, T., Schwieters, C.D., Krueger, S., Draper, D.E., Wang, Y.X.
PDB entry 2e37: Structure of TT0471 protein from Thermus thermophilus
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-11-21
Authors: Lokanath, N.K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e39: Crystal structure of the CN-bound form of Arthromyces ramosus peroxidase at 1.3 Angstroms resolution
Classification: OXIDOREDUCTASE
Source organism: 'Arthromyces ramosus'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2006-11-22
Authors: Fukuyama, K., Okada, T.
PDB entry 2e3a: Crystal structure of the NO-bound form of Arthromyces ramosus peroxidase at 1.3 Angstroms resolution
Classification: OXIDOREDUCTASE
Source organism: 'Arthromyces ramosus'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2006-11-22
Authors: Fukuyama, K., Okada, T.
PDB entry 2e3b: Crystal structure of the HA-bound form of Arthromyces ramosus peroxidase at 1.3 Angstroms resolution
Classification: OXIDOREDUCTASE
Source organism: 'Arthromyces ramosus'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2006-11-22
Authors: Fukuyama, K., Okada, T.
PDB entry 2e3c: Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2006-11-22
Authors: Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e3d: Crystal structure of E. coli glucose-1-phosphate uridylyltransferase
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2006-11-22
Authors: Thoden, J.B., Holden, H.M.
PDB entry 2e3e: NMR structure of DEF-BBB, a mutant of anopheles defensin DEF-AAA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Anopheles gambiae
Experimental method: SOLUTION NMR
Deposited: 2006-11-22
Authors: Landon, C., Barbault, F., Vovelle, F.
PDB entry 2e3f: NMR structure of DEF-BAT, a mutant of anopheles defensin DEF-AAA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Anopheles gambiae
Experimental method: SOLUTION NMR
Deposited: 2006-11-22
Authors: Landon, C., Barbault, F., Vovelle, F.
PDB entry 2e3g: NMR structure of DEF-DAA, a mutant of anopheles defensin DEF-AAA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Anopheles gambiae
Experimental method: SOLUTION NMR
Deposited: 2006-11-22
Authors: Landon, C., Barbault, F., Vovelle, F.
PDB entry 2e3h: Crystal structure of the CLIP-170 CAP-Gly domain 2
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2006-11-26
Authors: Maesaki, R., Hakoshima, T.
PDB entry 2e3i: Crystal structure of the CLIP-170 CAP-Gly domain 1
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-26
Authors: Maesaki, R., Hakoshima, T.
PDB entry 2e3j: The crystal structure of epoxide hydrolase B (Rv1938) from mycobacterium tuberculosis at 2.1 angstrom
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-11-27
Authors: Biswal, B.K., Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)