LiteFold/PDB huggingface dataset:
PDB entry 9yrc: p97Ufd1-Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP
Classification: TRANSLOCASE
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-10-16
Authors: Li, H., Rapoport, T.
PDB entry 9yrg: Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH undocked state
Classification: CONTRACTILE PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Mus musculus; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-10-16
Authors: Somavarapu, A.K., Ge, J., Yengo, C.M., Craig, R., Padron, R.
PDB entry 9yrh: Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH undocked state
Classification: CONTRACTILE PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Mus musculus; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-10-16
Authors: Somavarapu, A.K., Craig, R., Padron, R.
PDB entry 9yri: cis-CaaD E114Q mutant with covalent intermediates of the hydration and decarboxylation of acetylenecarboxylic acid
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-10-16
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9yrj: Cis-CaaD E114Q mutant with a covalent hydroxypropionate intermediate of the hydration of acetylenecarboxylic acid
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-10-16
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9yrk: Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-B complex, dimeric form
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-10-16
Authors: Yang, Y., Liu, C., Liu, B.
PDB entry 9yrl: Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-B complex, protomer A focused refinement
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-16
Authors: Yang, Y., Liu, C., Liu, B.
PDB entry 9yrn: Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-S complex, tetrameric form
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-10-16
Authors: Yang, Y., Liu, C., Liu, B.
PDB entry 9yro: Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 (E191A) in complex with T20P14-S complex, monomeric form
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-10-16
Authors: Yang, Y., Liu, C., Liu, B.
PDB entry 9yrr: HIV-1 Protease WT (NL4-3) in Complex with LR4-44
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-10-17
Authors: Lockbaum, G.J., Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9yru: Crystal structure of Apo Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum (Orthrhombic P form)
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2025-10-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yrw: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-10-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yrx: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with Cysteine
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-10-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yry: Crystal structure of HIV-1 Protease WT (NL4-3) in Complex with NR02-73
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-10-17
Authors: Lockbaum, G.J., Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9yrz: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with AMP
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-10-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ys0: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with ADP
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-10-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ys1: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with AMP and Cysteine
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2025-10-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ys2: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with cysteinyl-AMP
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2025-10-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ysf: Crystal structure of EEPD1 EEP domain dimer with Mg(II)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-10-17
Authors: Shen, R., Arvai, A.S., Brosey, C.A., Tsutakawa, S.E., Tainer, J.A.
PDB entry 9ysq: Structure of a human NUAK1-MARK3 kinase domain chimera in complex with inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-10-19
Authors: Mao, D.Y.L., Chini, F.D., Sicheri, F.
PDB entry 9yt0: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with ADP (long soak)
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-10-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yt2: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with ATP (long soak)
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-10-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yt3: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with 5'-Sulfamoyladenosine
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2025-10-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yt5: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum in complex with GMP
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-10-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ytd: Designed antibody vAB66 targeting PAP-HLA A*02:01
Classification: DE NOVO PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-10-20
Authors: Jude, K.M., Garcia, K.C.
PDB entry 9ytf: TCR mimic antibody vAB-30 in complex with MAGE-A3 in HLA-A1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-10-20
Authors: Wang, N., Jude, K.M.
PDB entry 9ytq: Computationally Designed Tetramer of Apo-HC4 (C1 symmetry)
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.34 Å
Deposited: 2025-10-21
Authors: Eng, V.H., Narehood, S.M., Tezcan, F.A.
PDB entry 9ytu: cis-CaaD E114D mutant with a covalent intermediates of the hydration of acetylenecarboxylic acid
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2025-10-21
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9yty: Human p38 ALPHA MAPK:MW01-7-081aSRM inhibitor complex
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-10-21
Authors: Brunzelle, J.S., Shuvalova, L., Roy, S.M., Watterson, D.M.
PDB entry 9ytz: Structure of Ovine gammaherpesvirus 2 ORF73 LANA bound to importin alpha 2
Classification: VIRAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-10-22
Authors: Forwood, J.K., Nath, B.
PDB entry 9yud: Re-Refined Human Phosphodiesterase 3B complexed with GSK4394835A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-10-22
Authors: Eaton, S.A., Christianson, D.W.
PDB entry 9yup: Crystal structure of PprA S-F-S tetramer from Deinococcus radiodurans
Classification: DNA BINDING PROTEIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-10-22
Authors: Szabla, R., Junop, M.S.
PDB entry 9yuy: Structure of the Plasmodium falciparum 20S proteasome in complex with a beta5-selective covalent syringolin analogue inhibitor.
Classification: HYDROLASE
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-10-23
Authors: Yan, N.L., Gu, X., Fajtova, P., Tse, E., Melo, A., Southworth, D.R., O'Donoghue, A., Sello, J.K., Gestwicki, J.E.
PDB entry 9yuz: Structure of the human 20S proteasome in complex with a beta5-selective covalent syringolin analogue inhibitor.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-10-23
Authors: Yan, N.L., Gu, X., Fajtova, P., Tse, E., Melo, A., Southworth, D.R., O'Donoghue, A., Sello, J.K., Gestwicki, J.E.
PDB entry 9yv3: Crystal Structure of a ternary complex of Saccharomyces cerevisiae Sec14 with a small molecule inhibitor and phosphatidylcholine
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-10-23
Authors: Singh, P.K., Green, S.M., Krieger, I., Sacchettini, J., Igumenova, T.I., Bankaitis, V.A.
PDB entry 9yv4: Crystal structure of the human DCAF1 WDR domain in complex with OICR-41109
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-10-23
Authors: Kimani, S., Dong, A., Li, Y., Seitova, A., Mamai, A., Al-awar, R., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9yv5: Crystal structure of cytochrome P450 enzyme Bmp7
Classification: OXIDOREDUCTASE
Source organism: Marinomonas mediterranea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-10-23
Authors: Nolan, K., Wang, Y.
PDB entry 9yvv: Cocrystallized structure of Bmp7 in complex with 2,4-dibromophenol
Classification: OXIDOREDUCTASE
Source organism: Marinomonas mediterranea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2025-10-23
Authors: Nolan, K., Wang, Y.
PDB entry 9yw2: Complex structure of human p97 bound to Faf1 and Ufd1 (NTD focused)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-10-23
Authors: Liao, Z., Arkinson, C., Martin, A.
PDB entry 9ywi: Crystal structure of a Glyceraldehyde-3-phosphate dehydrogenase from Bordetella pertussis (monoclinic P form)
Classification: OXIDOREDUCTASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-10-24
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ywn: Protein Structure of the First Glycoside Hydrolase Family 30, Subfamily 12 Endoxylanase
Classification: HYDROLASE
Source organism: Anaerobacterium chartisolvens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.916 Å
Deposited: 2025-10-24
Authors: St John, F.J., Tan, K.
PDB entry 9yx0: Structure of the 3-methylcrotonyl-coenzyme A carboxylase from Mycobacterium smegmatis
Classification: LIGASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2025-10-26
Authors: Liang, Y., Rubinstein, J.L.
PDB entry 9yx1: Structure of the long chain acyl-CoA carboxylase complex from Mycobacterium smegmatis
Classification: LIGASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-10-26
Authors: Liang, Y., Rubinstein, J.L.
PDB entry 9yx2: Structure of the long chain acyl-CoA carboxylase complex from Mycobacterium smegmatis with ATP, bicarbonate, and propionyl-CoA
Classification: LIGASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-10-26
Authors: Liang, Y., Rubinstein, J.L.
PDB entry 9yx4: Structure of the long chain acyl-CoA carboxylase complex from Mycobacterium smegmatis with ATP, bicarbonate, arachidoyl-CoA, and propionyl-CoA
Classification: LIGASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-10-26
Authors: Liang, Y., Rubinstein, J.L.
PDB entry 9yx5: Structure of the long chain acyl-CoA carboxylase complex from Mycobacterium smegmatis with MSMEG_0435-MSMEG_0436 bound
Classification: LIGASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-26
Authors: Liang, Y., Rubinstein, J.L.
PDB entry 9yxd: Crystal structure of recombinant human follicle stimulating hormone in complex with an anti-FSH alpha Fab
Classification: HORMONE
Source organism: Homo sapiens; Lama glama; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2025-10-27
Authors: Joseph, J.S., Kalson, D., Bakshi, S.
PDB entry 9yxq: Cryo-EM structure of the Xenopus laevis mitotic centromere-associated kinesin (MCAK) bound to the paclitaxel-stabilized microtubule
Classification: CELL CYCLE
Source organism: Sus scrofa; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2025-10-27
Authors: Funabiki, H., Niu, Y.
PDB entry 9yxy: Crystal structure of EEPD1 EEP domain dimer at pH 5.5
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-10-27
Authors: Shen, R., Arvai, A.S., Brosey, C.A., Tsai, C., Tsutakawa, S.E., Tainer, J.A.
PDB entry 9yy0: IGHV4-34 germline-reverted antibody pre166
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2025-10-28
Authors: Langley, D.B., Christ, D.
PDB entry 9yy4: Importin a2 in complex with Lone Star virus non-structural S (NSs) NLS peptide
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-10-28
Authors: Hawker, J.E., Forwood, J.K.
PDB entry 9yy9: Macrophage Migration Inhibitory Factor 1 from Heligmosomoides polygyrus
Classification: CYTOKINE
Source organism: Heligmosomoides polygyrus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-10-28
Authors: Orkwis, J.A., Lolis, E.J.
PDB entry 9yya: Macrophage Migration Inhibitory Factor 1 from Necator Americanus
Classification: CYTOKINE
Source organism: Necator americanus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.098 Å
Deposited: 2025-10-28
Authors: Orkwis, J.A., Lolis, E.J., Manjula, R.
PDB entry 9yz4: Neisseria gonorrhoeae Transferrin Binding Protein A in complex with Transferrin Binding Protein B and transferrin (iron bound in N lobe only)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Neisseria gonorrhoeae; Neisseria meningitidis serogroup B
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.26 Å
Deposited: 2025-10-29
Authors: Dubey, S., Noinaj, N.
PDB entry 9yz5: human FicD bound with farnesyl pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2025-10-30
Authors: Peng, W., Orth, K.
PDB entry 9yza: Isoreticular co-crystal 1 of protein variant Replication Initiator Protein REPE54 (L53G, Q54G, E55G) with symmetrical expanded duplex (31mer) containing insert sequence CCCGGCCGGA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzb: Isoreticular co-crystal 1 with symmetrical expanded duplex (31mer) containing insert sequence ACGGTAATTA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.13 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzc: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CGCGCGCGCG
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzd: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CTAATTAGGC
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yze: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TGATGAGCAG
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.07 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzf: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence AATTAGGCCG
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzg: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence ATGAGTCATA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzi: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CCCGGCCGGA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzj: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CGTAATTAGG
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzk: Isoreticular co-crystal 1 with symmetrical expanded duplex (42mer) containing insert sequence ACCCTTCTATGACCTACTCCA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 5.1 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzl: Isoreticular co-crystal of Replication Initiator Protein REPE54 and asymmetrical expanded duplex (31mer) containing the cognate REPE54 sequence, and additional T-A rich sequence with 5' terminal phosphates. Two copies of Even-skipped homeodomain loaded post-crystallization
Classification: DNA BINDING PROTEIN/DNA
Source organism: Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzm: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CTAATTAGGC and loaded with Even-skipped homeodomain
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzn: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TGATGAGCAG and loaded with Even-skipped homeodomain
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzo: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TGATGAGCAG and loaded with Even-skipped homeodomain
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzp: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TGATGAGCAG and loaded with ultrabithorax homeodomain
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.67 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzq: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TGATGAGCAG and loaded with Engrailed homeodomain enhanced Green fluorescent protein fusion
Classification: DNA BINDING PROTEIN/DNA
Source organism: Aequorea victoria; Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.75 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzr: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TAATTAGGCCG and loaded with ultrabithorax homeodomain
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.39 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzs: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TAATTAGGCCG and loaded with Even-skipped homeodomain
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzt: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TAATTAGGCCG and loaded with Antennapedia homeodomain
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster; Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzu: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence ATGAGTCATA and loaded with mutated Bzip region of GCN4 transcription factor
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2025-10-30
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9yzv: Joint Xray/Neutron structure of human DJ-1 at room temperature
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-10-30
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9yzw: Joint Xray/Neutron structure of Escherichia coli YajL at room temperature
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-10-30
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9yzy: ctSAGA Focused on HAT Bromodomain region
Classification: TRANSCRIPTION
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-10-30
Authors: Mattoo, R.U.H., Chen, D.H., Bushnell, D.A., Tamir, S., Kornberg, R.D.
PDB entry 9yzz: Crystal structure of Trastuzumab Fab conjugated to Linker-Payload
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2025-10-30
Authors: Jaime-Garza, M., Noland, C.L., Gabelli, S.B.
PDB entry 9z04: Structure of human lymphoid-specific helicase HELLS in its auto-inhibitory state
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-10-31
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9z05: Structure of human lymphoid-specific helicase HELLS in its auto-inhibitory state (D3)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-10-31
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9z06: Structure of human lymphoid-specific helicase HELLS in its auto-inhibitory state
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2025-10-31
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9z08: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing separate insert strand with sequence GACGGTAATT
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.22 Å
Deposited: 2025-10-31
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9z0c: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 7
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-10-31
Authors: Taylor, A.J.
PDB entry 9z0d: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 41
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-10-31
Authors: Taylor, A.J.
PDB entry 9z0e: Structure of disulfide-crosslinked S. cerevisiae Hrd1 dimer bound to one copy of Hrd3 in MSP1D1 nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-10-31
Authors: Pisa, R., Rapoport, T.A.
PDB entry 9z0f: Crystal structure of Trastuzumab Fc conjugated to Linker-Payload
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2025-10-31
Authors: Jaime-Garza, M., Noland, C.L., Gabelli, S.B.
PDB entry 9z0m: Human CD300c extracellular domain pH 7.5
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-11-02
Authors: Tennant, L., Littler, D.R., Rossjohn, J.
PDB entry 9z0w: Crystal structure of Neisseria gonorrhoeae penicillin-binding protein 2 from strain FA19 containing six resistance mutations
Classification: HYDROLASE
Source organism: Neisseria gonorrhoeae FA19
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-11-03
Authors: Singh, A., Bala, S., Davies, C.
PDB entry 9z0x: Crystal structure of Neisseria gonorrhoeae penicillin-binding protein 2 from strain FA19 containing seven resistance mutations
Classification: HYDROLASE
Source organism: Neisseria gonorrhoeae FA19
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-11-03
Authors: Singh, A., Bala, S., Davies, C.
PDB entry 9z0y: Crystal structure of Neisseria gonorrhoeae penicillin-binding protein 2 from strain FA19 containing seven resistance mutations and three epistatic mutations
Classification: HYDROLASE
Source organism: Neisseria gonorrhoeae FA19
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2025-11-03
Authors: Singh, A., Bala, S., Davies, C.
PDB entry 9z1a: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CCGCGCAGGC
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.102 Å
Deposited: 2025-11-03
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9z1b: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CCGCGCAGGC, crystal soaked in alternate solvent prior to diffraction
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.88 Å
Deposited: 2025-11-03
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9z1c: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CTAATTAGGC, crystal soaked in alternate solvent prior to diffraction
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2025-11-03
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9z1d: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence GCTTGATGAG, crystal soaked in alternate solvent prior to diffraction
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2025-11-03
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9z1l: Structure of KIT V654A mutant with Compound 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.543 Å
Deposited: 2025-11-04
Authors: Kim, J.L.
PDB entry 9z1p: Backbone Modification in the GCN4 Leucine Zipper: Prototype
Classification: TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-11-04
Authors: Page, G.E., Lin, Y., Horne, W.S.
PDB entry 9z1q: Backbone Modification in the GCN4 Leucine Zipper: Calpha-methyl-Glu at position 11
Classification: TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-11-04
Authors: Page, G.E., Lin, Y., Horne, W.S.
PDB entry 9z1r: Backbone Modification in the GCN4 Leucine Zipper: beta3-Glu at position 20
Classification: TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-11-04
Authors: Page, G.E., Lin, Y., Horne, W.S.
PDB entry 9z1s: Backbone Modification in the GCN4 Leucine Zipper: beta3-Ala at position 24
Classification: TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-11-04
Authors: Page, G.E., Lin, Y., Horne, W.S.
PDB entry 9z1t: Backbone Modification in the GCN4 Leucine Zipper: Aib at position 24
Classification: TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-11-04
Authors: Page, G.E., Lin, Y., Horne, W.S.
PDB entry 9z1u: Backbone Modification in the GCN4 Leucine Zipper: beta3-Lys at position 28
Classification: TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-11-04
Authors: Page, G.E., Lin, Y., Horne, W.S.
PDB entry 9z1v: Backbone Modification in the GCN4 Leucine Zipper: Calpha-methyl-Lys at position 28
Classification: TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-11-04
Authors: Page, G.E., Lin, Y., Horne, W.S.
PDB entry 9z28: KHK Bound to Compound 7
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-11-04
Authors: Ferrao, R.D.
PDB entry 9z29: KHK Bound to Compound 9
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-11-04
Authors: Ferrao, R.D.
PDB entry 9z2a: KHK Bound to Compound 12
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-11-04
Authors: Ferrao, R.D.
PDB entry 9z2b: KHK Bound to Compound 18
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-11-04
Authors: Ferrao, R.D.
PDB entry 9z2c: KHK Bound to GS-1291269
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-11-04
Authors: Ferrao, R.D.
PDB entry 9z2d: Mitochondrial Creatine Kinase in complex with ADP, creatine, and uncompetitive inhibitor uci
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-11-04
Authors: Demir, M., Zhao, J., Sergienko, E.
PDB entry 9z2f: Mitochondrial Creatine Kinase in complex with ADP and uncompetitive inhibitor uci
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-11-05
Authors: Demir, M., Zhao, J., Sergienko, E.
PDB entry 9z2h: Crystal structure of A10 Fab in complex with the EGFR peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-11-05
Authors: Zhan, J., Maslanka, C., Xia, D.
PDB entry 9z2i: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in its Apo form at Room Temperature
Classification: HYDROLASE
Source organism: Alphaproteobacteria bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-11-05
Authors: Capra, N., Meilleur, F.
PDB entry 9z2l: The ubiquitin-associated domain of human thirty-eight negative kinase-1 rigidly fused to the 1TEL crystallization chaperone
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-11-05
Authors: Wilson, E.W., Bradford, M.J., Averett, J.C., Averett, B.J., Anderson, E., Anderson, A., Doukov, T., Moody, J.D.
PDB entry 9z2m: Ca2+-bound MthK WT in lipid nanodiscs composed of 14:1PC (75%) and POPG (25%)
Classification: TRANSPORT PROTEIN
Source organism: Methanothermobacter thermautotrophicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-11-05
Authors: Yoo, H., Nimigean, C.M.
PDB entry 9z2s: Structure of KIT V654A mutant with Compound 11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-11-05
Authors: Kim, J.L.
PDB entry 9z2v: Ca2+-bound MthK WT in lipid nanodiscs composed of 22:1PC (75%) and POPG (25%)
Classification: TRANSPORT PROTEIN
Source organism: Methanothermobacter thermautotrophicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-11-05
Authors: Yoo, H., Nimigean, C.M.
PDB entry 9z2x: Crystal structure of Glutamate-tRNA synthetase GluRS from Chlamydia pneumoniae (Orthorhombic C form)
Classification: LIGASE
Source organism: Chlamydia pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-11-05
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9z2y: Crystal structure of Glutamate-tRNA synthetase GluRS from Chlamydia pneumoniae in complex with ATP
Classification: LIGASE
Source organism: Chlamydia pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-11-05
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9z2z: Crystal structure of Glutamate-tRNA synthetase GluRS from Chlamydia pneumoniae in complex with O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE
Classification: LIGASE
Source organism: Chlamydia pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-11-05
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9z30: Solution NMR Structure of the PACS1 Furin binding region (FBR)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-11-05
Authors: Byeon, I.L., Krzysiak, T.C., Gronenborn, A.M.
PDB entry 9z32: The structure of short splice variant (Q9UBL9-2) of human P2X2 receptor channel in lipid nanodiscs with Mg-ATP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-11-05
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9z3b: Structure C-terminal human Mesothelin Peptide bound to MSLNB703 Fab
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-11-06
Authors: Shaffer, P.L., Ember, S.
PDB entry 9z3q: Cryo-EM structure of KSHV glycoprotein gHgL in complex with MLKH3 and MLKH10 FABs
Classification: IMMUNE SYSTEM
Source organism: Human gammaherpesvirus 8; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-11-07
Authors: Lang, K., Aldridge, N., Pancera, M.
PDB entry 9z44: Isoreticular co-crystal 1 with symmetrical expanded duplex (31mer) containing insert sequence CCCGGCCGGA and loaded with C-clamp domain
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 7.2 Å
Deposited: 2025-11-08
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9z4d: Crystal structure of Cysteinyl-tRNA synthetase (CysRS) from Plasmodium falciparum (Hexagonal P form)
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2025-11-10
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9z4e: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CATGAGTCAT and loaded with mutated Bzip region of GCN4 transcription factor
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.63 Å
Deposited: 2025-11-10
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9z4w: Cryo-EM structure of rabbit major vault protein complex
Classification: STRUCTURAL PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-11-11
Authors: Li, H., Clarke, O.B.
PDB entry 9z4x: MENIN IN COMPLEX WITH JNJ-75276617 (Bleximenib)
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2025-11-11
Authors: Shaffer, P.L.
PDB entry 9z55: Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence CATGAGTCAT
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.94 Å
Deposited: 2025-11-11
Authors: Shields, E.T., Slaughter, C.K., Magna, E.N., Snow, C.D.
PDB entry 9z5n: Cryo-EM structure of rabbit vault cap
Classification: STRUCTURAL PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2025-11-12
Authors: Li, H., Clarke, O.B.
PDB entry 9z5q: HECT domain of NEDD4-2 complex with a targeted nanobody, nb.C11
Classification: LIGASE
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-11-12
Authors: Afriyie, E., Clarke, O.B.
PDB entry 9z5t: Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin-resistant strain H041 in complex with boronate inhibitor VNRX-14079
Classification: LIGASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-11-12
Authors: Bala, S., Stratton, C.M., Davies, C.
PDB entry 9z5y: Crystal structure of Bothrops pirajai myotoxin I PrTX-I complexed with inhibitor AZD2716
Classification: TOXIN
Source organism: Bothrops pirajai
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-11-13
Authors: Salvador, G.H.M., Fontes, M.R.M.
PDB entry 9z6b: Crystal structure of SARS-CoV-2 PLpro in complex with compound 10
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-11-14
Authors: Pemberton, O.A., Ng, T.I.
PDB entry 9z6c: Crystal structure of SARS-CoV-2 PLpro in complex with compound 14
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-11-14
Authors: Pemberton, O.A., Ng, T.I.
PDB entry 9z6r: Crystal Structure of CBS domain containing protein from Burkholderia phymatum
Classification: UNKNOWN FUNCTION
Source organism: Paraburkholderia phymatum STM815
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-11-14
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9z6u: The structure of TMD with 2 TARPs and 2 CNIHs from all native AMPA receptor subtypes
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-11-14
Authors: Park, J., Gouaux, E.
PDB entry 9z6v: The structure of TMD with 3 TARPs and 1 CNIH from all native AMPA receptor subtypes
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-11-14
Authors: Park, J., Gouaux, E.
PDB entry 9z6w: The structure of TMD with 4 TARPs from all native AMPA receptor subtypes
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-11-14
Authors: Park, J., Gouaux, E.
PDB entry 9z6y: Structure of the elongating EcDRT3 reverse transcriptase in complex with its non-coding RNA
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-11-14
Authors: Deng, P., Gao, A.
PDB entry 9z6z: Structure of the resting EcDRT3 reverse transcriptase in complex with its non-coding RNA
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-11-14
Authors: Deng, P., Gao, A.
PDB entry 9z70: Crystal structure of shorter construct of SHP2 unbound N-SH2 domain (Y66 in blocking conformation)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-11-14
Authors: Padua, R.A.P., Sullivan, C., Glaser, A., Ojoawo, A., Kern, D.
PDB entry 9z74: X-ray structure of SARS-CoV-2 main protease V186G covalently bound to inhibitor Nirmatrelvir at 1.81 A
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-11-16
Authors: Beechboard, S.N., Ghosh, A.K., Mesecar, A.D., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9z75: Crystal Structure of Wild-type Mouse Gamma(S)-Crystallin
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-11-16
Authors: Keyes, A., De-la-Torre, P., Paschalis, E., Indzhykulian, A.
PDB entry 9z7p: Stable open sheep connexin-46 in amphipol at low pH
Classification: MEMBRANE PROTEIN
Source organism: Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-11-17
Authors: Jarodsky, J.M., Myers, J.B., Reichow, S.L.
PDB entry 9z7u: Human Stomatin - C8 Symmetry
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2025-11-17
Authors: Vallese, F., Clarke, O.B.
PDB entry 9z7w: Stable open sheep connexin-50 in amphipol at low pH
Classification: MEMBRANE PROTEIN
Source organism: Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-11-17
Authors: Jarodsky, J.M., Myers, J.B., Reichow, S.L.
PDB entry 9z80: SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-11-18
Authors: Park, S., Ward, A.B.
PDB entry 9z81: Stable open state sheep connexin-46 in DMPC nanodiscs at neutral pH
Classification: MEMBRANE PROTEIN
Source organism: Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2025-11-18
Authors: Jarodsky, J.M., Myers, J.B., Reichow, S.L.
PDB entry 9z82: Stable open state sheep connexin-50 in DMPC nanodiscs at neutral pH
Classification: MEMBRANE PROTEIN
Source organism: Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2025-11-18
Authors: Jarodsky, J.M., Myers, J.B., Reichow, S.L.
PDB entry 9z8f: Destabilized open state sheep connexin-46 in DMPC nanodiscs at neutral pH
Classification: MEMBRANE PROTEIN
Source organism: Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-11-18
Authors: Jarodsky, J.M., Myers, J.B., Reichow, S.L.
PDB entry 9z8k: Crystal Structure of serine/threonine-protein kinase (AEK1) from Trypanosoma brucei
Classification: TRANSFERASE
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-11-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)