LiteFold/PDB huggingface dataset:
PDB entry 9vwy: Crystal structure of C270S mutant of Papain-like protease (PLpro) from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-07-17
Authors: Arya, R., Ganesh, J., Prashar, V., Kumar, M.
PDB entry 9vwz: Local refinement region of HPV45 in complex with antibody A16E6
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: human papillomavirus 45; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-07-17
Authors: Jiang, Y., Sun, H., Zheng, Q., Li, S.
PDB entry 9vx1: The cryo-EM structure of gRNA-bound SPARDA complex
Classification: CELL INVASION
Source organism: Novosphingopyxis baekryungensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-07-18
Authors: Li, Y., Jiang, Y., Zheng, Q., Li, S.
PDB entry 9vx2: Crystal structure of the apo form of HisMab-1 Fab
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-07-18
Authors: Hoshi, S., Arimori, T., Harada-Hikita, A.
PDB entry 9vx3: Crystal structure of the peptide-bound form of HisMab-1 Fv-clasp
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-07-18
Authors: Hitomi, N., Harada-Hikita, A., Arimori, T.
PDB entry 9vx6: Helical structure of gRNA-tDNA SPARDA complex
Classification: CELL INVASION
Source organism: Bacteriophage sp.; Novosphingopyxis baekryungensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2025-07-18
Authors: Li, Y., Zheng, Q., Li, S., Jiang, Y.
PDB entry 9vxg: ROS-Sensing Transcription Factor YchJ Regulates the RssB-RpoS Pathway to Protect Salmonella Against Oxidative Attack by Macrophages
Classification: DNA BINDING PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Experimental method: X-RAY DIFFRACTION
Resolution: 2.302 Å
Deposited: 2025-07-18
Authors: Yuan, X.L., Wang, W.W.
PDB entry 9vxi: Cryo-EM structure of the SPS3-FBN5 complex from Oryza sativa in complex with cobalt and geranylgeranyl S-thiodiphosphate (GGSPP)
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2025-07-18
Authors: Xiao, H., Li, M., Yang, G.-F.
PDB entry 9vxs: Crystal structure of Antifungal agent Tavaborole in complex with SME-1 class A carbapenemase
Classification: ANTIMICROBIAL PROTEIN
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-07-20
Authors: Dhankhar, K., Hazra, S.
PDB entry 9vxv: Cryo-EM Structure of Nipah Virus Polymerase in complex with ERDRP-0519
Classification: REPLICATION
Source organism: Henipavirus nipahense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-07-20
Authors: Xue, L., Gui, J., Chang, T., Pan, H., Xiong, X.
PDB entry 9vxw: Cryo-EM structure of hAQP11 in LMNG
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-07-20
Authors: Suzuki, S., Nishikawa, K., Kamegawa, A., kozai, D., Fujiyoshi, Y.
PDB entry 9vxx: Cryo-EM Structure of Measles Virus Polymerase in complex with ERDRP-0519
Classification: REPLICATION
Source organism: Measles morbillivirus; Measles virus genotype B3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2025-07-20
Authors: Xue, L., Gui, J., Chang, T., Pan, H., Xiong, X.
PDB entry 9vxy: Cryo-EM Structure of Nipah Virus Polymerase in complex with GL22
Classification: REPLICATION
Source organism: Henipavirus nipahense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-07-20
Authors: Xue, L., Gui, J., Chang, T., Pan, H., Xiong, X.
PDB entry 9vxz: Cryo-EM structure of Measles Virus L Protein bound by Phosphoprotein Tetramer
Classification: VIRAL PROTEIN
Source organism: Measles morbillivirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-07-20
Authors: Xue, L., Gui, J., Chang, T., Pan, H., Xiong, X.
PDB entry 9vy0: Cryo-EM Structure of Peste Des Petits Ruminants Virus Polymerase in complex with ERDRP-0519
Classification: VIRAL PROTEIN
Source organism: peste-des-petits-ruminants virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2025-07-20
Authors: Xue, L., Gui, J., Chang, T., Pan, H., Xiong, X.
PDB entry 9vy1: Cryo-EM structure of Peste Des Petits Ruminants Virus L Protein bound by Phosphoprotein Tetramer
Classification: VIRAL PROTEIN
Source organism: peste-des-petits-ruminants virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-07-20
Authors: Xue, L., Gui, J., Chang, T., Pan, H., Xiong, X.
PDB entry 9vyc: The crystal structure of PaiB from Bacillus stearothermophilus bound to HEM
Classification: TRANSCRIPTION
Source organism: Geobacillus kaustophilus HTA426
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42123 Å
Deposited: 2025-07-20
Authors: Zhang, Z.M., Huang, H.S.
PDB entry 9vye: Cyanopodophage Pan3 capsid
Classification: VIRUS
Source organism: Pseudanabaena phage Pan3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-21
Authors: Hou, P., Zhou, C.Z., Jiang, Y.L.
PDB entry 9vyf: Cyanopodophage Pan3 portal complex
Classification: VIRAL PROTEIN
Source organism: Pseudanabaena phage Pan3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-07-21
Authors: Hou, P., Zhou, C.Z., Jiang, Y.L.
PDB entry 9vyg: Cyanopodophage Pan3 tail complex
Classification: VIRAL PROTEIN
Source organism: Pseudanabaena phage Pan3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-07-21
Authors: Hou, P., Zhou, C.Z., Jiang, Y.L.
PDB entry 9vyh: Cyanopodophage Pan3 tailspike
Classification: VIRAL PROTEIN
Source organism: Pseudanabaena phage Pan3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-07-21
Authors: Hou, P., Zhou, C.Z., Jiang, Y.L.
PDB entry 9vyi: Cryo-EM structure of bacteriophage P1 baseplate in C1
Classification: VIRAL PROTEIN
Source organism: Escherichia phage P1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-07-21
Authors: Chen, Y., Liu, H.R.
PDB entry 9vyl: Crystal structure of BdThsB1 with NAD
Classification: IMMUNE SYSTEM
Source organism: Cytobacillus dafuensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.539 Å
Deposited: 2025-07-21
Authors: Hong, S., Choe, J.
PDB entry 9vyq: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus crystallized with sodium acetate at pH 8
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vyr: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus at pH 6
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vys: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus at pH 9
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vyt: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus crystallized with sodium citrate at pH 8.0
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vyu: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus crystallized with PEG1500 and glycerol at pH 8.0
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vyv: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus at pH 4
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vyw: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus crystallized with CaCl2 at pH 5
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vyx: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus crystallized with CaCl2 at pH 6
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vyy: Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus crystallized with CaCl2 at pH 7
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-07-21
Authors: Yadav, B., Gaikwad, S.S., Shubhangi, S., Kumar, A., Chandravanshi, K., Makde, R.D.
PDB entry 9vz0: Cryo-EM structure of the head of contracted P1
Classification: VIRAL PROTEIN
Source organism: Escherichia phage P1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-07-21
Authors: Chen, Y., Liu, H.R.
PDB entry 9vz8: Local refinement region of HPV45 in complex with antibody 10G2
Classification: VIRUS LIKE PARTICLE
Source organism: human papillomavirus 45; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2025-07-22
Authors: Jiang, Y., Sun, H., Zheng, Q., Li, S.
PDB entry 9vzi: Cyanopodophage Pan3 Needle
Classification: VIRUS
Source organism: Pseudanabaena phage Pan3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-07-22
Authors: Hou, P., Zhou, C.Z., Jiang, Y.L.
PDB entry 9vzk: Cryo-EM structure of bacteriophage P1 baseplate in C3
Classification: VIRAL PROTEIN
Source organism: Escherichia phage P1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-22
Authors: Chen, Y., Liu, H.R.
PDB entry 9vzo: Crystal structure of ShosA from E. coli KTE181
Classification: ANTITOXIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26693 Å
Deposited: 2025-07-22
Authors: Yang, R., He, L., Li, F.
PDB entry 9vzr: MG8, a PET hydrolase enzyme from the human saliva metagenome
Classification: HYDROLASE
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-07-23
Authors: Amornloetwattana, R., Meesawat, P., Robinson, C.R., Uttamapinant, C.
PDB entry 9vzw: A solution NMR model of Z-form DNA binding with ligand CBL0137
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2025-07-23
Authors: Wang, S.Y., Liu, F.F., Xu, Y.
PDB entry 9vzx: Cryo-EM structure of TasH-tigRNA-gap dsDNA complex
Classification: ANTIVIRAL PROTEIN
Source organism: Salicola phage CGphi29
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-07-23
Authors: Zhang, H., Liu, Z.
PDB entry 9w02: Cryo-EM structure of TasH-tigRNA-ssDNA complex
Classification: ANTIVIRAL PROTEIN
Source organism: Salicola phage CGphi29
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-07-23
Authors: Zhang, H., Liu, Z.
PDB entry 9w03: Cryo-EM structure of TasH-tigRNA complex
Classification: ANTIVIRAL PROTEIN
Source organism: Salicola phage CGphi29
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-07-23
Authors: Zhang, H., Liu, Z.
PDB entry 9w04: Cryo-EM structure of TasH-tigRNA-dsDNA complex
Classification: ANTIVIRAL PROTEIN
Source organism: Salicola phage CGphi29
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2025-07-23
Authors: Zhang, H., Liu, Z.
PDB entry 9w0p: CryoEM structure of T2R14 in complex with chlorhexidine and heterotrimeric G protein complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-07-24
Authors: Tan, Q., Yu, Y., Han, X., Zhao, Q., Wu, B.
PDB entry 9w0q: Cryo-EM structure of T2R14 in complex with tangeretin and heterotrimeric G protein
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-24
Authors: Tan, Q., Yu, Y., Han, X., Zhao, Q., Wu, B.
PDB entry 9w0r: Cryo-EM structure of apo-T2R46 in complex with heterotrimeric G protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-07-24
Authors: Tan, Q., Yu, Y., Han, X., Zhao, Q., Wu, B.
PDB entry 9w0s: CryoEM structure of T2R46 in complex with Arteminisin and heterotrimeric G protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-07-24
Authors: Tan, Q., Yu, Y., Han, X., Zhao, Q., Wu, B.
PDB entry 9w0t: CryoEM structure of the T2R46 in complex with Denatomium benozate and heterotrimeric G protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-07-24
Authors: Tan, Q., Yu, Y., Han, X., Zhao, Q., Wu, B.
PDB entry 9w0u: CryoEM structure of the T2R46 in complex with tangeretin and heterotrimeric G protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-07-24
Authors: Tan, Q., Yu, Y., Han, X., Zhao, Q., Wu, B.
PDB entry 9w0w: CryoEM structure of the T2R46 in complex with strychine and heterotrimeric G protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-24
Authors: Tan, Q., Yu, Y., Han, X., Zhao, Q., Wu, B.
PDB entry 9w0x: Cryo-EM structure of a Fungal XPR1
Classification: TRANSPORT PROTEIN
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-07-24
Authors: Shen, H.Z., Yang, H., Wang, Y.C.
PDB entry 9w11: Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with beta-zearalenol
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-07-25
Authors: Peng, R.M., Min, J., Li, K.K.
PDB entry 9w12: Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with ZOL-P
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-07-25
Authors: Peng, R.M., Min, J., Li, K.K.
PDB entry 9w13: Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with ZEN-P
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-07-25
Authors: Peng, R.M., Min, J., Li, K.K.
PDB entry 9w14: Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2025-07-25
Authors: Sun, H., Jiang, Y., Li, S., Zheng, Q.
PDB entry 9w15: 3-Hydroxybutyryl-CoA dehydrogenase with NAD and acetoacetyl CoA
Classification: OXIDOREDUCTASE
Source organism: Faecalibacterium prausnitzii L2-6
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2025-07-25
Authors: Shin, B.M.
PDB entry 9w16: 3-hydroxybutyryl-CoA dehydrogenase with NAD
Classification: OXIDOREDUCTASE
Source organism: Faecalibacterium prausnitzii L2-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2025-07-25
Authors: Shin, B.M.
PDB entry 9w17: 3-Hydroxybutyryl-CoA dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Faecalibacterium prausnitzii L2-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2025-07-25
Authors: Shin, B.M.
PDB entry 9w1b: Cryo-EM structure of a Fungal XPR1 with InsP6
Classification: TRANSPORT PROTEIN
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-07-25
Authors: Shen, H.Z., Yang, H., Wang, Y.C.
PDB entry 9w1c: LH2 complex from Ectothiorhodospira haloalkaliphila with inhibited carotenoid biosynthesis
Classification: PHOTOSYNTHESIS
Source organism: Ectothiorhodospira haloalkaliphila ATCC 51935
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.92 Å
Deposited: 2025-07-25
Authors: Burtseva, A.D., Baymukhametov, T.N., Popov, V.O., Ashikhmin, A.A., Boyko, K.M.
PDB entry 9w1k: Crystal structure of Aedes aegypti Dopachrome Conversion Enzyme.
Classification: ISOMERASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-07-25
Authors: Guo, Y., Zhang, L., Guo, D., Deng, J., Li, J., Han, Q.
PDB entry 9w1l: NMR Structure of the 5BSL3.2 Apical Stem-Loop RNA from HCV
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2025-07-26
Authors: Kumar, A., Penumutchu, S., Deshmukh, M.V., Jain, N.
PDB entry 9w1n: Human SLC37A4 antiparallel dimer
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-26
Authors: Zhou, D., Zhang, Z.
PDB entry 9w1o: Phosphate-bound human SLC37A4 antiparallel dimer
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-26
Authors: Zhou, D., Zhang, Z.
PDB entry 9w1p: G6P-bound human SLC37A4 lateral dimer
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-26
Authors: Zhou, D., Zhang, Z.
PDB entry 9w1q: Human SLC37A4 lateral dimer
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-26
Authors: Zhou, D., Zhang, Z.
PDB entry 9w1r: S-4048-bound human SLC37A4 monomer
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-26
Authors: Zhou, D., Zhang, Z.
PDB entry 9w1x: DENV2 non-structural protein 1 (NS1) Loose Tetramer Conformation 2
Classification: VIRAL PROTEIN
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w1y: DENV2 non-structural protein 1 (NS1) with C-terminal mVenus Conformation 2
Classification: VIRAL PROTEIN
Source organism: Aequorea victoria; dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w1z: DENV2 non-structural protein 1 (NS1) Stable Tetramer Conformation 2
Classification: VIRAL PROTEIN
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w20: DENV2 non-structural protein 1 (NS1) Stable Tetramer Conformation 1
Classification: VIRAL PROTEIN
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w21: DENV2 non-structural protein 1 (NS1) Loose Tetramer Conformation 1
Classification: VIRAL PROTEIN
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w22: DENV2 non-structural protein 1 (NS1) Dimer
Classification: VIRAL PROTEIN
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w23: DENV2 non-structural protein 1 (NS1) Stable Tetramer complexed with Heparin
Classification: VIRAL PROTEIN
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w24: DENV2 non-structural protein 1 (NS1) with C-terminal mVenus fusion
Classification: VIRAL PROTEIN
Source organism: Aequorea victoria; dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w25: DENV2 non-structural protein 1 (NS1) with C-terminal mVenus Conformation 1
Classification: VIRAL PROTEIN
Source organism: Aequorea victoria; dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2025-07-26
Authors: Zhou, Q.F., Lok, S.M.
PDB entry 9w26: Cryo-EM structure of TasH-tigRNA (5G)-dsDNA complex
Classification: ANTIVIRAL PROTEIN
Source organism: Salicola phage CGphi29
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-07-26
Authors: Zhang, H., Liu, Z.
PDB entry 9w2c: Crystal structure of Aedes aegypti Dopachrome Conversion Enzyme with L-Dopamine.
Classification: ISOMERASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 3.39 Å
Deposited: 2025-07-27
Authors: Guo, Y., Zhang, L., Guo, D., Li, J., Deng, J., Han, Q.
PDB entry 9w2f: Cryo-EM structure of DDB1-CRBN in complex with dHuR-2 and HuR
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-27
Authors: Dou, H., Zhu, Y.
PDB entry 9w2k: Structural basis of substrate promiscuity in the archaeal RNA-splicing endonuclease from Candidatus Micrarchaeum acidiphilum (ARMAN-2)
Classification: SPLICING/RNA
Source organism: Candidatus Micrarchaeum acidiphilum ARMAN-2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.798 Å
Deposited: 2025-07-28
Authors: Hirata, A.
PDB entry 9w2m: Cryo-EM structure of the Cytoplasmic lattice(CPL) from mouse oocyte
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-07-28
Authors: Liu, S.X., Xue, J.C., Zhang, Y., Liu, Y.S., Gao, H.S., Shen, E.Z.
PDB entry 9w2p: ShosT_apo from E. coli KTE181
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli KTE181
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-07-28
Authors: Yang, R., He, L., Li, F.
PDB entry 9w2q: ShosT with PRPP from Escherichia coli KTE181
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli KTE181
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2025-07-28
Authors: Yang, R., He, L., Li, F.
PDB entry 9w2r: Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1)
Classification: MOTOR PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-28
Authors: Nakano, A., Masuya, T., Akisada, S., Ishikawa-Fukuda, M., Mitsuoka, K., Miyoshi, H., Murai, M., Yokoyama, K.
PDB entry 9w2s: Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2)
Classification: MOTOR PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-07-28
Authors: Nakano, A., Masuya, T., Akisada, S., Ishikawa-Fukuda, M., Mitsuoka, K., Miyoshi, H., Murai, M., Yokoyama, K.
PDB entry 9w2t: Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
Classification: MOTOR PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-07-28
Authors: Nakano, A., Masuya, T., Akisada, S., Ishikawa-Fukuda, M., Mitsuoka, K., Miyoshi, H., Murai, M., Yokoyama, K.
PDB entry 9w2u: Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-07-28
Authors: Nakano, A., Masuya, T., Akisada, S., Ishikawa-Fukuda, M., Mitsuoka, K., Miyoshi, H., Murai, M., Yokoyama, K.
PDB entry 9w2v: Cryo-EM structure of complex I on the bovine heart submitochondrial particles, closed
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-07-28
Authors: Nakano, A., Masuya, T., Akisada, S., Ishikawa-Fukuda, M., Mitsuoka, K., Miyoshi, H., Murai, M., Yokoyama, K.
PDB entry 9w2x: Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-1
Classification: MOTOR PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-07-28
Authors: Nakano, A., Masuya, T., Akisada, S., Ishikawa-Fukuda, M., Mitsuoka, K., Miyoshi, H., Murai, M., Yokoyama, K.
PDB entry 9w2y: Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-2
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-07-28
Authors: Nakano, A., Masuya, T., Akisada, S., Ishikawa-Fukuda, M., Mitsuoka, K., Miyoshi, H., Murai, M., Yokoyama, K.
PDB entry 9w2z: Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-A
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-07-28
Authors: Nakano, A., Masuya, T., Akisada, S., Ishikawa-Fukuda, M., Mitsuoka, K., Miyoshi, H., Murai, M., Yokoyama, K.
PDB entry 9w32: antagonist 1-bound inactive SSTR5 structure
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-07-28
Authors: Li, Y., Xing, Z., Zhao, L., Xu, H.E.
PDB entry 9w33: S5A1-bound inactive SSTR5 structure
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-07-28
Authors: Li, Y., Xing, Z., Zhao, L., Xu, H.E.
PDB entry 9w39: Structure of human 26S proteasome complexed with midnolin, 19S proteasome with Ubl bound
Classification: HYDROLASE
Source organism: Escherichia coli K-12; Homo sapiens; Purpureocillium lilacinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-07-29
Authors: Zhu, C., Qin, L., Liang, L.
PDB entry 9w3a: Crystal structure of PfiAT toxin-antitoxin complex
Classification: TOXIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-29
Authors: Wang, X.X., Chen, R.
PDB entry 9w3d: Cryo-EM structure of E. coli RNA polymerase in complex with EP1
Classification: TRANSCRIPTION
Source organism: Escherichia coli; Escherichia phage phiSUSP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-07-29
Authors: Yuan, L., Feng, Y.
PDB entry 9w3e: Cryo-EM structure of E. coli RNA polymerase in complex with PP1
Classification: TRANSCRIPTION
Source organism: Escherichia coli; Pseudomonas phage vB_PaeM_PAO1_Ab17
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-07-29
Authors: Yuan, L., Feng, Y.
PDB entry 9w3g: Cryo-EM structure of E. coli RNA polymerase in complex with VP1
Classification: TRANSCRIPTION
Source organism: Escherichia coli; Escherichia coli (strain K12); Vibrio phage vB_VpaP_M3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-07-29
Authors: Yuan, L., Feng, Y.
PDB entry 9w3i: Cryo-EM structure of Oryza sativa phosphate transporter SPDT in apo-state
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Indica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-07-29
Authors: Fang, S., Zhang, X., Zhang, P.
PDB entry 9w3u: Structure of Csm6 from Actinomyces procaprae
Classification: IMMUNE SYSTEM
Source organism: Actinomyces procaprae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-07-30
Authors: Lin, Z., Gao, H., Shi, R., Yang, M., Liu, Y.
PDB entry 9w3v: Structure of Csm6 from Actinomyces procaprae in complex with cyclic hexa-adenylate
Classification: IMMUNE SYSTEM/RNA
Source organism: Actinomyces procaprae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-07-30
Authors: Lin, Z., Gao, H., Shi, R., Yang, M., Liu, Y.
PDB entry 9w3w: Structure of Csm6 from Actinomyces procaprae in complex with cyclic penta-adenylate
Classification: IMMUNE SYSTEM/RNA
Source organism: Actinomyces procaprae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-07-30
Authors: Lin, Z., Gao, H., Shi, R., Yang, M., Liu, Y.
PDB entry 9w3z: Cryo-EM structure of the 4:4 Lac1-Lip1 complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-07-30
Authors: Xie, T., Gong, X.
PDB entry 9w44: Structure of hemagglutinin from Asiatic toad influenza-like virus complexed with avian receptor analog LSTa
Classification: VIRAL PROTEIN
Source organism: Wuhan asiatic toad influenza virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2025-07-30
Authors: Zhang, D., Xie, Y.F.
PDB entry 9w45: The structure of odorant-bound mouse class II odorant receptor-miniGs complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-30
Authors: Choi, C.W., Gil, M.S., Choi, H.-J.
PDB entry 9w47: Structure of protein O-glucosyltransferase 2 with UDP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-07-31
Authors: Xia, Y.Y., Zhang, M., Yu, H.J.
PDB entry 9w49: Cryo-EM structure of human kappa opioid receptor -G protein signaling complex bound with U-50488H
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-07-31
Authors: Suno-Ikeda, C., Takai, T., Hirose, M., Inoue, A., Sugita, Y., Kato, T., Kobayashi, T., Suno, R.
PDB entry 9w4b: Crystal structure of beta-glucosidase CaBGL
Classification: HYDROLASE
Source organism: Caldicellulosiruptor sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2025-07-31
Authors: You, C., Feng, Y.G.
PDB entry 9w4f: Crystal structure of beta-glucosidase CaBGL mutant E163Q in complex with glucose
Classification: HYDROLASE
Source organism: Caldicellulosiruptor sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2025-07-31
Authors: You, C., Feng, Y.G.
PDB entry 9w4j: Cryo-EM structure of CpcL-PBS3
Classification: PHOTOSYNTHESIS
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-07-31
Authors: Mao, Z.Y., Li, Z.H., Han, G.Y.
PDB entry 9w4m: ratTRPV1 bound with antagonist AMG517
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-07-31
Authors: Gao, Y.H., Li, Z.X.
PDB entry 9w4n: Structure of rat TRPV1 in complex with SB-366791
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-07-31
Authors: Chen, X., Yu, Y.
PDB entry 9w4r: Cryo-EM structure of hTUT4_mini:hLin28A:pre-let-7g miRNA_UUU, conformation 1
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2025-08-01
Authors: Han, X., Yamashita, S., Tomita, K.
PDB entry 9w4s: Cryo-EM structure of hTUT4_mini:hLin28A:pre-let-7g miRNA_UUU, conformation 2
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2025-08-01
Authors: Han, X., Yamashita, S., Tomita, K.
PDB entry 9w4t: ratTRPV1 bound with antagonist AMG9810
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-08-01
Authors: Gao, Y.H., Li, Z.X.
PDB entry 9w4u: ASFV E146L
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-01
Authors: Yong, W., DongDong, D.
PDB entry 9w4v: Structure of transcription factor in complex with D-allo-Ile
Classification: TRANSCRIPTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-08-01
Authors: Sakuraba, H., Ohshima, T., Yoneda, K.
PDB entry 9w4w: Structure of transcription factor in complex with L-Ile
Classification: TRANSCRIPTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-08-01
Authors: Sakuraba, H., Ohshima, T., Yoneda, K.
PDB entry 9w4x: N-terminal half domain of EPC3
Classification: VIRAL PROTEIN
Source organism: Colletotrichum orbiculare
Experimental method: SOLUTION NMR
Deposited: 2025-08-01
Authors: Xu, Z., Ohki, S.
PDB entry 9w54: Structure of L-glutamate oxidase in complex with L-glutamate
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. X-119-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2025-08-01
Authors: Ueda, Y., Takekawa, N., Nakayama, N., Inagaki, K., Imada, K.
PDB entry 9w55: Structure of L-glutamate oxidase E617Q mutant
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. X-119-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-08-01
Authors: Ueda, Y., Takekawa, N., Yano, Y., Inagaki, K., Imada, K.
PDB entry 9w56: Structure of L-glutamate oxidase E617Q mutant in complex with L-glutamate
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. X-119-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-08-01
Authors: Ueda, Y., Takekawa, N., Yano, Y., Inagaki, K., Imada, K.
PDB entry 9w57: Structure of L-glutamate oxidase E617F mutant
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. X-119-6
Experimental method: X-RAY DIFFRACTION
Resolution: 3.27 Å
Deposited: 2025-08-01
Authors: Ueda, Y., Takekawa, N., Nakayama, N., Inagaki, K., Imada, K.
PDB entry 9w58: Structure of L-glutamate oxidase E617K mutant
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. X-119-6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-08-01
Authors: Ueda, Y., Takekawa, N., Nakayama, N., Inagaki, K., Imada, K.
PDB entry 9w59: The structure of dUTPase from Methanosarcina mazei
Classification: HYDROLASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-08-01
Authors: Chen, S.C., Hsu, C.H.
PDB entry 9w5a: The structure of dUTPase in complex with dUTP from Methanosarcina mazei
Classification: HYDROLASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2025-08-01
Authors: Chen, S.C., Hsu, C.H.
PDB entry 9w5c: Complex structure of MAGI3 WW1 and IQSEC3 PPxY motif
Classification: PROTEIN BINDING
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-08-01
Authors: Wang, J., Lin, L., Zhu, J.
PDB entry 9w5i: AGO maturation complex (AMC): AGO2-miRNA duplex in complex with Hsp90 beta and co-chaperone p23
Classification: CHAPERONE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2025-08-01
Authors: Lee, H., Jeong, M.-S., Lee, Y.-Y., Lee, J.-H., Lee, D., Kim, V.N., Roh, S.-H.
PDB entry 9w5w: Crystal structure of Namat in complex with NAD
Classification: VIRAL PROTEIN
Source organism: Bacillus phage SPbetaL1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-08-02
Authors: Bao, H., Xu, L.
PDB entry 9w5x: Crystal structure of Namat in complex with nicotinamide
Classification: VIRAL PROTEIN
Source organism: Bacillus phage SPbetaL1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-08-02
Authors: Bao, H., Xu, L.
PDB entry 9w60: Butyryl CoA dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Faecalibacterium prausnitzii L2-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-08-03
Authors: Park, S.H., Bang, K.H., Seo, M.J., Hwang, K.Y.
PDB entry 9w61: Butyryl CoA dehydrogenase with FAD
Classification: OXIDOREDUCTASE
Source organism: Faecalibacterium prausnitzii L2-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2025-08-03
Authors: Park, S.H., Bang, K.H., Seo, M.J., Hwang, K.Y.
PDB entry 9w69: Crystal structure of ASFV EP424R
Classification: TRANSFERASE
Source organism: African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2025-08-03
Authors: Wang, Z.X., Guo, F.L., Liu, Y.
PDB entry 9w6v: Crystal structure of 11betaHSD1 in complex with compound 1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-08-05
Authors: Takahashi, M.
PDB entry 9w6w: 5-CT-bound serotonin 5A (5-HT5A) receptor-Gi protein complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-08-05
Authors: Zhang, X., Xie, L., Chen, P., Yu, J., Tian, X., Wei, J., Shao, Z., Yan, W., Xu, Z.
PDB entry 9w6y: Crystal structure of L-galactose dehydrogenase from Luteolibacter sp. strain LG18 in complex with L-galactose and NADP+
Classification: OXIDOREDUCTASE
Source organism: Luteolibacter sp. LG18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-08-05
Authors: Koubara, K., Takenoya, M., Suzuki, M., Ito, S., Sasaki, Y., Nakamura, A., Yajima, S.
PDB entry 9w74: Cryo-EM structure of the close-packed di-hexasome (CPDH)
Classification: GENE REGULATION
Source organism: Escherichia coli; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.94 Å
Deposited: 2025-08-05
Authors: Ho, C.-H., Takizawa, Y., Kurumizaka, H.
PDB entry 9w75: sarbecovirus Rc-o319 S-trimer in a locked-1 conformation
Classification: VIRAL PROTEIN
Source organism: Sarbecovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Deposited: 2025-08-05
Authors: Wang, J., Li, Z.X., Li, Z.M., Yuan, H., Xiong, X.
PDB entry 9w76: sarbecovirus Rc-o319 S-trimer in a locked-2 conformation
Classification: VIRAL PROTEIN
Source organism: Sarbecovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-08-05
Authors: Wang, J., Li, Z.X., Li, Z.M., Huang, Y., Xiong, X.
PDB entry 9w77: Rhinolophus cornutus Bat ACE2 Dimer in Complex with Two Rc-o319 Sarbecovirus Spike RBDs.
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Rhinolophus cornutus; Sarbecovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-08-05
Authors: Wang, J., Xiong, X., Li, Z.X., Li, Z.M., Hang, Y.
PDB entry 9w78: Rhinolophus cornutus Bat ACE2 Dimer in Complex with Two Rc-o319 Sarbecovirus Spike RBDs.
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Rhinolophus cornutus; Sarbecovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-08-05
Authors: Wang, J., Li, Z.X., Li, Z.M., Hang, Y., Xiong, X.
PDB entry 9w7a: Crystal structure of L-galactose dehydrogenase from Luteolibacter sp. strain LG18 in complex with L-glucose and NADP+
Classification: OXIDOREDUCTASE
Source organism: Luteolibacter sp. LG18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-08-06
Authors: Koubara, K., Takenoya, M., Suzuki, M., Ito, S., Sasaki, Y., Nakamura, A., Yajima, S.
PDB entry 9w7f: Crystal structure of African swine fever virus methyltransferase EP424R in complex with S-adenosylmethionine
Classification: TRANSFERASE
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-08-06
Authors: Wang, Z.X., Guo, F.L., Liu, Y., Peng, G.Q.
PDB entry 9w7g: Crystal structure of African swine fever virus methyltransferase EP424R in complex with sinefungin
Classification: TRANSFERASE
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2025-08-06
Authors: Wang, Z.X., Guo, F.L., Liu, Y.
PDB entry 9w7k: Cryo-EM structure of CpcL-PBS2
Classification: PHOTOSYNTHESIS
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-08-06
Authors: Mao, Z.Y., Li, Z.H., Han, G.Y.
PDB entry 9w7n: Crystal Structure of Vaborbactam in complex with SME-1 class A Carbapenemase
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-06
Authors: Dhankhar, K., Hazra, S.
PDB entry 9w7o: Crystal Structure of Taniborbactam in complex with SME-1 class A Carbapenemase
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-08-06
Authors: Dhankhar, K., Hazra, S.
PDB entry 9w7p: Crystal Structure of Ledaborbactam in complex with SME-1 class A Carbapenemase
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-08-06
Authors: Dhankhar, K., Hazra, S.
PDB entry 9w7q: SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class A
Classification: IMMUNE SYSTEM
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2025-08-06
Authors: Zheng, R., Ma, L.J.
PDB entry 9w7s: Crystal Structure of NFIB Bound to TGGCA-Containing DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-08-06
Authors: Zhu, C., Wang, Y., Qin, C., Song, H.
PDB entry 9w7t: SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class B
Classification: IMMUNE SYSTEM
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2025-08-06
Authors: Zheng, R., Ma, L.J.
PDB entry 9w7u: SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class C
Classification: IMMUNE SYSTEM
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-08-06
Authors: Zheng, R., Ma, L.J.
PDB entry 9w7v: SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class D
Classification: IMMUNE SYSTEM
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2025-08-07
Authors: Zheng, R., Ma, L.J.
PDB entry 9w7w: Crystal Structure of NFIB Bound to a Palindromic DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2025-08-07
Authors: Zhu, C., Wang, Y., Qin, C., Song, H.
PDB entry 9w8g: Crystal structure of Staphylococcus aureus cysteine-free ScdA with bound iron, determined by molecular replacement and Fe anomalous signal
Classification: METAL BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-08-07
Authors: Yang, W.K.
PDB entry 9w8h: Isomerase Structure at 140K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-07
Authors: Guven, O., DeMirci, H.
PDB entry 9w8i: Isomerase at 160K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-07
Authors: Guven, O., DeMirci, H.
PDB entry 9w8k: Isomerase at 180K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-07
Authors: Guven, O., DeMirci, H.
PDB entry 9w8l: Isomerase at 200K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-07
Authors: Guven, O., DeMirci, H.
PDB entry 9w8m: Isomerase at 240K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-07
Authors: Guven, O., DeMirci, H.
PDB entry 9w8n: Isomerase at 290K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-07
Authors: Guven, O., DeMirci, H.
PDB entry 9w8o: Isomerase at 285K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-07
Authors: Guven, O., DeMirci, H.
PDB entry 9w8p: Isomerase at 260K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-07
Authors: Guven, O., DeMirci, H.
PDB entry 9w90: DDB1-DDA1-DET1-Ube2e2-COP1-c-Jun-STK40 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-08-08
Authors: Su, M.Y.
PDB entry 9w96: Crystal structure of BioZ C115S from Agrobacterium tumefaciens in complex with galutaryl-CoA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-08-09
Authors: Zhang, L., Zhang, L.
PDB entry 9w9d: SuperFi Cas9 - 22nt sgRNA - DNA ternary complex
Classification: IMMUNE SYSTEM
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-08-09
Authors: Zheng, R., Ma, L.J.
PDB entry 9w9h: Cryo-EM structure of the mouse kinesin-2 tail in complex with KAP3 adaptor
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-08-10
Authors: Jiang, X., Danev, R., Yanagisawa, H., Kikkawa, M.
PDB entry 9w9i: Cryo-EM structure of the kinesin-2 tail domain in complex with KAP3 and APC
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-08-10
Authors: Jiang, X., Danev, R., Yanagisawa, H., Kikkawa, M.
PDB entry 9wa5: Crystal structure of an inactive form of NS2B-NS3 Protease
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-08-11
Authors: Ngo, K.H., Liew, C.W., Luo, D., Kang, C.B.
PDB entry 9wa7: Crystal Structure of Human NFIX in Complex with TGGCA(N3)TGCCA Palindromic DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2025-08-11
Authors: Zhu, C., Chen, X., Qin, C., Song, H.
PDB entry 9wa9: SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class B
Classification: IMMUNE SYSTEM
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2025-08-11
Authors: Zheng, R., Ma, L.J.
PDB entry 9waa: SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class C
Classification: IMMUNE SYSTEM
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.17 Å
Deposited: 2025-08-11
Authors: Zheng, R., Ma, L.J.