LiteFold/PDB huggingface dataset:
PDB entry 8cdb: Proulilysin E229A structure
Classification: HYDROLASE
Source organism: Methanosarcina acetivorans C2A
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2023-01-30
Authors: Rodriguez-Banqueri, A., Eckhard, U., Gomis-Ruth, F.X.
PDB entry 8cdc: Native 3CLpro from SARS-CoV-2 at 1.54 A
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-01-30
Authors: Mazzei, L., Jovanovic, A., Acton, T.B., Ciurli, S., Montelione, G.T.
PDB entry 8cdd: PfRH5-PfCyRPA-PfRIPR complex from Plasmodium falciparum bound to antibody Cy.003
Classification: CELL ADHESION
Source organism: Gallus gallus; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-01-30
Authors: Farrell, B., Higgins, M.K.
PDB entry 8cde: PfCyRPA-PfRIPR complex from Plasmodium falciparum bound to antibody Cy.003
Classification: CELL ADHESION
Source organism: Gallus gallus; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-30
Authors: Farrell, B., Higgins, M.K.
PDB entry 8cdf: Structure of glutarate hydroxylase (GlaH) from Escherichia coli at a resolution of 1.8 angstrom obtained as a contaminant during routine use of E. coli as an expression host
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-01-30
Authors: Adeyeye, A.A., Schubert, W.
PDB entry 8cdg: Crystal structure of human IL-17A cytokine in complex with macrocycle
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-01-30
Authors: Schulze, M.-S.
PDB entry 8cdj: CAND1 b-hairpin++-SCF-SKP2 CAND1 rolling SCF engaged
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-31
Authors: Baek, K., Schulman, B.A.
PDB entry 8cdk: CAND1 b-hairpin++-SCF-SKP2 CAND1 partly engaged SCF partly rocked
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-01-31
Authors: Baek, K., Schulman, B.A.
PDB entry 8cdl: 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Classification: RIBOSOME
Source organism: Escherichia coli; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2023-01-31
Authors: Milicevic, N., Jenner, L., Myasnikov, A., Yusupov, M., Yusupova, G.
PDB entry 8cdm: Plasmodium falciparum Myosin A full-length, post-rigor state complexed to the inhibitor KNX-002
Classification: MOTOR PROTEIN
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-01-31
Authors: Moussaoui, D., Robblee, J.P., Robert-Paganin, J., Auguin, D., Fisher, F., Fagnant, P.M., MacFarlane, J.E., Mueller-Dieckmann, C., Baum, J., Trybus, K.M., Houdusse, A.
PDB entry 8cdn: Crystal structure of human Brachyury in complex with a single T box binding element DNA
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-01-31
Authors: Newman, J.A., Gavard, A.E., von Delft, F., Gileadi, O., Bountra, C.
PDB entry 8cdo: PBP AccA-F144YG440Q from A. tumefaciens Bo542 in complex with agrocinopine C-like
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-01-31
Authors: Morera, S., Vigouroux, A.
PDB entry 8cdp: Cryo-EM structure of the RESC1-RESC2 complex
Classification: RNA BINDING PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-31
Authors: Dolce, L.G., Weis, F., Kowalinski, E.
PDB entry 8cdq: Plasmodium falciparum Myosin A full-length, post-rigor state complexed to the inhibitor KNX-002 and Mg.ATP-gamma-S
Classification: MOTOR PROTEIN
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-01-31
Authors: Moussaoui, D., Robblee, J.P., Robert-Paganin, J., Auguin, D., Fisher, F., Fagnant, P.M., MacFarlane, J.E., Schaletzky, J., Wehri, E., Mueller-Dieckmann, C., Baum, J., Trybus, K.M., Houdusse, A.
PDB entry 8cdr: Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Classification: RIBOSOME
Source organism: Escherichia coli; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2023-01-31
Authors: Milicevic, N., Jenner, L., Myasnikov, A., Yusupov, M., Yusupova, G.
PDB entry 8cds: Crystal structure of the xhNup93-Nb4i VHH antibody
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-02-01
Authors: Guttler, T., Colom, M.S., Gorlich, D.
PDB entry 8cdt: Crystal structure of the xNup93-Nb2t VHH antibody
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-02-01
Authors: Guttler, T., Colom, M.S., Gorlich, D.
PDB entry 8cdu: Rnase R bound to a 30S degradation intermediate (main state)
Classification: RIBOSOME
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-01
Authors: Paternoga, H., Dimitrova-Paternoga, L., Wilson, D.N.
PDB entry 8cdv: Rnase R bound to a 30S degradation intermediate (state II)
Classification: RIBOSOME
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.73 Å
Deposited: 2023-02-01
Authors: Paternoga, H., Dimitrova-Paternoga, L., Wilson, D.N.
PDB entry 8cdw: CRYSTAL STRUCTURE OF HUMAN HPK1 (MAP4K1) COMPLEX WITH 7-(1-methyl-1H-pyrazol-4-yl)-N-[4-(1-methylpiperidin-4-yl)phenyl]quinazolin-2-amine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.941 Å
Deposited: 2023-02-01
Authors: Musil, D., Toure, M.
PDB entry 8cdx: Human carbonic anhydrase I complexed with 4-(3-ethylureido)benzenesulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.335 Å
Deposited: 2023-02-01
Authors: Angeli, A., Ferraroni, M.
PDB entry 8cdy: N-terminal domain of human apolipoprotein E
Classification: LIPID TRANSPORT
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-02-01
Authors: Marek, M., Nemergut, M.
PDB entry 8cdz: human carbonic anhydrase I complexed with 4-(3-butylureido)benzenesulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2023-02-01
Authors: Angeli, A., Ferraroni, M.
PDB entry 8ce0: N-terminal domain of human apolipoprotein E
Classification: LIPID TRANSPORT
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-01
Authors: Marek, M., Nemergut, M.
PDB entry 8ce1: Cytochrome c maturation complex CcmABCD
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-02-01
Authors: Ilcu, L., Zhang, L., Einsle, O.
PDB entry 8ce2: X-ray structure of the adduct formed upon reaction of a B-DNA double helical dodecamer with dirhodium tetraacetate
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-02-01
Authors: Tito, G., Troisi, R., Ferraro, G., Sica, F., Merlino, A.
PDB entry 8ce3: Crystal structure of MGAT5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase V) luminal domain with a Lys329-Ile345 loop truncation, in complex with 3D fragment 2548
Classification: CARBOHYDRATE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-02-01
Authors: Gilio, A.K., Darby, J.F., Wu, L., Davies, G.J.
PDB entry 8ce4: Human alpha7 nicotinic receptor in complex with the E3 nanobody
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-02-01
Authors: Prevost, M.S., Barilone, N., Dejean de la Batie, G., Pons, S., Ayme, G., England, P., Gielen, M., Bontems, F., Pehau-Arnaudet, G., Maskos, U., Lafaye, P., Corringer, P.-J.
PDB entry 8ce5: Cytochrome c maturation complex CcmABCD, E154Q, ATP-bound
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-02-01
Authors: Ilcu, L., Zhang, L., Einsle, O.
PDB entry 8ce6: Crystal structure of human Cd11b I domain in P212121 space group
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.582 Å
Deposited: 2023-02-01
Authors: Koekemoer, L., Williams, E., Ni, X., Gao, Q., Coker, J., MacLean, E.M., Wright, N.D., Marsden, B., Von Delft, F., Schwenzer, A., Midwood, K.
PDB entry 8ce7: Type1 alpha-synuclein filament assembled in vitro by wild-type and mutant (7 residues insertion) protein
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-02-01
Authors: Yang, Y., Garringer, J.H., Shi, Y., Lovestam, S., Peak-Chew, S.Y., Zhang, X.J., Kotecha, A., Bacioglu, M., Koto, A., Takao, M., Spillantini, G.M., Ghetti, B., Vidal, R., Murzin, G.A., Scheres, H.W.S., Goedert, M.
PDB entry 8ce8: Cytochrome c maturation complex CcmABCDE
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2023-02-01
Authors: Ilcu, L., Zhang, L., Einsle, O.
PDB entry 8ce9: Crystal structure of human Cd11b I domain in C121 space group
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-02-01
Authors: Koekemoer, L., Williams, E., Ni, X., Gao, Q., Coker, J., MacLean, E.M., Wright, N.D., Marsden, B., Von Delft, F., Schwenzer, A., Midwood, K.
PDB entry 8cea: Cytochrome c maturation complex CcmABCD, E154Q
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2023-02-01
Authors: Ilcu, L., Zhang, L., Einsle, O.
PDB entry 8ceb: Type2 alpha-synuclein filament assembled in vitro by wild-type and mutant (7 residues insertion) protein
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-02-01
Authors: Yang, Y., Garringer, J.H., Shi, Y., Lovestam, S., Sew, P.C., Zhang, X.J., Kotecha, A., Bacioglu, M., Koto, A., Takao, M., Spillantini, G.M., Ghetti, B., Vidal, R., Murzin, G.A., Scheres, H.W.S., Goedert, M.
PDB entry 8cec: Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Classification: RIBOSOME
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2023-02-01
Authors: Paternoga, H., Dimitrova-Paternoga, L., Wilson, D.N.
PDB entry 8ced: Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Classification: RIBOSOME
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.15 Å
Deposited: 2023-02-01
Authors: Paternoga, H., Dimitrova-Paternoga, L., Wilson, D.N.
PDB entry 8cee: Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Classification: RIBOSOME
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-02-01
Authors: Paternoga, H., Dimitrova-Paternoga, L., Wilson, D.N.
PDB entry 8cef: Asymmetric Dimerization in a Transcription Factor Superfamily is Promoted by Allosteric Interactions with DNA
Classification: HORMONE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.486 Å
Deposited: 2023-02-01
Authors: Patel, A.K.M., Shaik, T.B., McEwen, A.G., Moras, D., Klaholz, B.P., Billas, I.M.L.
PDB entry 8ceg: BAR domain protein FAM92A1 essential for mitochondrial membrane remodeling
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-02-01
Authors: Kajander, T., Fudo, S., Yan, Z., Zhao, H.
PDB entry 8ceh: Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Classification: RIBOSOME
Source organism: Escherichia coli; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.05 Å
Deposited: 2023-02-01
Authors: Milicevic, N., Jenner, L., Myasnikov, A., Yusupov, M., Yusupova, G.
PDB entry 8cei: Succinyl-CoA Reductase from Clostridium kluyveri (SucD)
Classification: OXIDOREDUCTASE
Source organism: Clostridium kluyveri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-02
Authors: Pfister, P., Diehl, C., Erb, T.J.
PDB entry 8cej: Succinyl-CoA Reductase from Clostridium kluyveri (SucD) with Mesaconyl-C1-CoA
Classification: OXIDOREDUCTASE
Source organism: Clostridium kluyveri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-02
Authors: Pfister, P., Diehl, C., Erb, T.J.
PDB entry 8cek: Succinyl-CoA Reductase from Clostridium kluyveri (SucD) with NADPH
Classification: OXIDOREDUCTASE
Source organism: Clostridium kluyveri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-02-02
Authors: Pfister, P., Diehl, C., Erb, T.J.
PDB entry 8cem: Structure of bovine native C3, re-refinement
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-02-02
Authors: Andersen, G.R., Fredslund, F.
PDB entry 8cen: Yeast RNA polymerase II transcription pre-initiation complex with core Mediator
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-02
Authors: Wang, H., Schilbach, S., Cramer, P.
PDB entry 8ceo: Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-02
Authors: Wang, H., Cramer, P.
PDB entry 8cep: Kasugamycin bound to the 30S body
Classification: RIBOSOME
Source organism: Escherichia coli BW25113; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2023-02-02
Authors: Paternoga, H., Beckert, B., Wilson, D.N.
PDB entry 8ceq: Crystal structure of monkeypox virus methyltransferase VP39 in complex with inhibitor TO427
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-02
Authors: Klima, M., Silhan, J., Boura, E.
PDB entry 8cer: Crystal structure of monkeypox virus methyltransferase VP39 in complex with inhibitor TO494
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-02-02
Authors: Klima, M., Silhan, J., Boura, E.
PDB entry 8ces: Crystal structure of monkeypox virus methyltransferase VP39 in complex with inhibitor TO500
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-02
Authors: Klima, M., Silhan, J., Boura, E.
PDB entry 8cet: Crystal structure of monkeypox virus methyltransferase VP39 in complex with inhibitor TO507
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-02
Authors: Klima, M., Silhan, J., Boura, E.
PDB entry 8ceu: Retapamulin and Capreomycin bound to the 50S subunit
Classification: RIBOSOME
Source organism: Escherichia coli BW25113; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.83 Å
Deposited: 2023-02-02
Authors: Paternoga, H., Beckert, B., Wilson, D.N.
PDB entry 8cev: Crystal structure of monkeypox virus methyltransferase VP39 in complex with inhibitor TO1119
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-02-02
Authors: Klima, M., Silhan, J., Boura, E.
PDB entry 8cew: Crystal structure of human DNA cross-link repair 1A in complex with N-hydroxyimide inhibitor H1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-02-02
Authors: Newman, J.A., Yosaatmadja, Y., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.
PDB entry 8cex: Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH11227.
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-02-02
Authors: Kosenina, S., Scaletti, E.R., Stenmark, P.
PDB entry 8cey: Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH11233.
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-02-02
Authors: Kosenina, S., Scaletti, E.R., Stenmark, P.
PDB entry 8cez: HK97 Portal Protein In situ (prohead II)
Classification: VIRAL PROTEIN
Source organism: Hendrixvirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-02-02
Authors: Hawkins, D.E.D.P., Antson, A.A.
PDB entry 8cf0: Crystal structure of human DNA cross-link repair 1A in complex with quinoxalinedione inhibitor H2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-02-02
Authors: Newman, J.A., Yosaatmadja, Y., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.
PDB entry 8cf1: Tetracycline bound to the 30S head
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.82 Å
Deposited: 2023-02-02
Authors: Paternoga, H., Crowe-McAuliffe, C., Beckert, B., Wilson, D.N.
PDB entry 8cf2: Solution structure of the RNA helix formed by the 5'-end of U1 snRNA and an A-1 bulged 5'-splice site in complex with SMN-CY
Classification: SPLICING
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2023-02-02
Authors: Malard, F., Marquevielle, J., Campagne, S.
PDB entry 8cf3: Crystal structure of S. aureus BlaR1 sensor domain in complex with cefepime
Classification: SIGNALING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2023-02-02
Authors: Miguel-Ruano, V., Hermoso, J.A.
PDB entry 8cf4: SH3 domain solved by the exact solid-state method from the Bruker Dynamics Center using the combined correction method with PDB 2NUZ
Classification: PEPTIDE BINDING PROTEIN
Source organism: Gallus gallus
Experimental method: SOLID-STATE NMR
Deposited: 2023-02-02
Authors: Soeldner, B.
PDB entry 8cf5: Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Classification: RIBOSOME
Source organism: Escherichia coli; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2023-02-02
Authors: Milicevic, N., Jenner, L., Myasnikov, A., Yusupov, M., Yusupova, G.
PDB entry 8cf6: Dimethylated RSL-R5 in complex with cucurbit[7]uril, F432 cage assembly
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2023-02-02
Authors: Ramberg, K., Crowley, P.B.
PDB entry 8cf7: Dimethylated RSL-R5 in complex with cucurbit[7]uril, C121 sheet assembly
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2023-02-02
Authors: Ramberg, K., Crowley, P.B.
PDB entry 8cf8: Eravacycline bound to the 30S head
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-02-03
Authors: Paternoga, H., Koller, T.O., Beckert, B., Wilson, D.N.
PDB entry 8cf9: Crystal structure of the human PXR ligand-binding domain in complex with sclareol
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-03
Authors: Carivenc, C., Derosa, Q., Grimaldi, M., Boulahtouf, A., Balaguer, P., Bourguet, W.
PDB entry 8cfa: HK97 Prohead II as part of a DNA packaging complex
Classification: VIRAL PROTEIN
Source organism: Hendrixvirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-02-03
Authors: Hawkins, D.E.D.P., Antson, A.A.
PDB entry 8cfb: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment D02
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfc: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment A01
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfd: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment A07
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfe: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment B03
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cff: Crystal structure of arsenite oxidase from Alcaligenes faecalis (Af Aio) bound to arsenite
Classification: OXIDOREDUCTASE
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-02-03
Authors: Engrola, F., Correia, M.A.S., Romao, M.J., Santos-Silva, T.
PDB entry 8cfg: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment C04
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfh: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment C08
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfi: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment D07
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfj: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment D10
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfk: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment E06
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfl: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment E07
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfm: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment E08
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfn: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment F03
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfo: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment F04
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfp: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment F09
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfq: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment F11
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfr: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment G03
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfs: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment G11
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cft: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment G12
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfu: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment H02
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfv: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment H04
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfw: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment H05
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfx: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment H06
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfy: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment H08
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cfz: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment H09
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cg0: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment H11
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cg1: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment H12
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cg2: Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with F2X-Entry library fragment B07
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-02-03
Authors: Malecki, P.H., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 8cg3: Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 1)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2023-02-03
Authors: Arseni, D., Ryskeldi-Falcon, B.
PDB entry 8cg4: The organise full-length structure of the fungal non-reducing polyketide synthase (NR-PKS) PksA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus parasiticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-02-03
Authors: Munoz-Hernandez, H., Maier, T.
PDB entry 8cg5: The ACP crosslinked to the KS of the cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1 (SAT-KS:ACP-MAT)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Cercospora nicotianae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-02-03
Authors: Munoz-Hernandez, H., Tittes, Y.U., Maier, T.
PDB entry 8cg6: The ACP crosslinked to the SAT of the cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1 (ACP:SAT-KS-MAT)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Cercospora nicotianae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-03
Authors: Munoz-Hernandez, H., Tittes, Y.U., Maier, T.
PDB entry 8cg7: Structure of p53 cancer mutant Y220C with arylation at Cys182 and Cys277
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-02-03
Authors: Balourdas, D.I., Pichon, M.M., Baud, M.G.J., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 8cg8: Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Classification: RIBOSOME
Source organism: Escherichia coli; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-02-03
Authors: Milicevic, N., Jenner, L., Myasnikov, A., Yusupov, M., Yusupova, G.
PDB entry 8cg9: Crystal structure of human DNA cross-link repair 1A in complex with a cyclic N-hydroxyurea inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-02-03
Authors: Newman, J.A., Yosaatmadja, Y., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.
PDB entry 8cga: Structure of Mycobacterium tuberculosis dUTPase delta 133A-137S mutant
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-02-03
Authors: Toth, Z.S., Benedek, A., Leveles, I., Vertessy, B.G.
PDB entry 8cgb: Monkeypox virus VP39 in complex with SAH
Classification: TRANSFERASE
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2023-02-03
Authors: Silhan, J., Klima, M., Skvara, P., Boura, E.
PDB entry 8cgc: Structure of CSF1R in complex with a pyrollopyrimidine (compound 23)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.925 Å
Deposited: 2023-02-03
Authors: Aarhus, T.I., Bjornstad, F., Wolowczyk, C., Larsen, K.U., Rognstad, L., Leithaug, T., Unger, A., Habenberger, P., Wolff, A., Bjorkoy, G., Pridans, C., Eickhoff, J., Klebl, B., Hoff, B.H., Sundby, E.
PDB entry 8cgd: Clindamycin bound to the 50S subunit
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.98 Å
Deposited: 2023-02-03
Authors: Paternoga, H., Koller, T.O., Beckert, B., Wilson, D.N.
PDB entry 8cge: The crystal structure of a cobalt-bound scFv reveals a Tetrameric polyHistidine motif (TetrHis)
Classification: METAL BINDING PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-03
Authors: Healey, R.D., Hoh, F., Granier, S., Leyrat, C.
PDB entry 8cgf: Interleukin-4 (wild type) pH 2.4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-02-04
Authors: Vaz, D.C., Rodrigues, J.R., Loureiro-Ferreira, N., Mueller, T., Sebald, W., Redfield, C., Brito, R.M.M.
PDB entry 8cgg: Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 2)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-02-04
Authors: Arseni, D., Ryskeldi-Falcon, B.
PDB entry 8cgh: Structure of TDP-43 amyloid filament from type A FTLD-TDP (variant 3)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-02-04
Authors: Arseni, D., Ryskeldi-Falcon, B.
PDB entry 8cgi: Pentacycline TP038 bound to the 30S head
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.89 Å
Deposited: 2023-02-04
Authors: Paternoga, H., Crowe-McAuliffe, C., Novacek, J., Wilson, D.N.
PDB entry 8cgj: Streptomycin bound to the 30S body
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.79 Å
Deposited: 2023-02-05
Authors: Paternoga, H., Crowe-McAuliffe, C., Beckert, B., Wilson, D.N.
PDB entry 8cgk: Lincomycin and Avilamycin bound to the 50S subunit
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.64 Å
Deposited: 2023-02-05
Authors: Paternoga, H., Crowe-McAuliffe, C., Beckert, B., Wilson, D.N.
PDB entry 8cgl: Cryo-EM structure of RNase J from Helicobacter pylori
Classification: RNA BINDING PROTEIN
Source organism: Helicobacter pylori B128
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-02-05
Authors: Lulla, A., Luisi, B.F.
PDB entry 8cgm: Structure of the lipoprotein transporter LolA from Porphyromonas gingivalis
Classification: PROTEIN TRANSPORT
Source organism: Porphyromonas gingivalis ATCC 33277
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-02-06
Authors: Persson, K., Jaiman, D., Nagampalli, R.
PDB entry 8cgn: Non-rotated 80S S. cerevisiae ribosome with ligands
Classification: RIBOSOME
Source organism: Escherichia coli; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2023-02-06
Authors: Milicevic, N., Jenner, L., Myasnikov, A., Yusupov, M., Yusupova, G.
PDB entry 8cgo: Structure of human butyrylcholinesterase in complex with N-{[2-(benzyloxy)-3-methoxyphenyl]methyl}-N-[3-(2-fluorophenyl)propyl]cyclobutanamine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-02-06
Authors: Brazzolotto, X., Pidany, F., Korabecny, J., Cahlikova, L., Nachon, F.
PDB entry 8cgp: Insulin regulated aminopeptidase (IRAP) in complex with an allosteric aryl sulfonamide inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-02-06
Authors: Mpakali, A., Stratikos, E., Giastas, P.
PDB entry 8cgq: Crystal structure of UGT708A6 with UDP
Classification: TRANSFERASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2023-02-06
Authors: Fredslund, F., Bidart, G.N., Welner, D.H.
PDB entry 8cgr: Apramycin bound to the 30S body
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.12 Å
Deposited: 2023-02-06
Authors: Paternoga, H., Koller, T.O., Beckert, B., Wilson, D.N.
PDB entry 8cgs: Crystal structure of arsenite oxidase from Alcaligenes faecalis (Af Aio) bound to antimony oxyanion
Classification: OXIDOREDUCTASE
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-02-06
Authors: Engrola, F., Correia, M.A.S., Romao, M.J., Santos-Silva, T.
PDB entry 8cgt: STRUCTURE OF CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED WITH A THIO-MALTOHEXAOSE
Classification: TRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1998-09-27
Authors: Schmidt, A.K., Schulz, G.E.
PDB entry 8cgu: Gentamicin bound to the 30S body
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.89 Å
Deposited: 2023-02-06
Authors: Paternoga, H., Crowe-McAuliffe, C., Novacek, J., Wilson, D.N.
PDB entry 8cgv: Tiamulin bound to the 50S subunit
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.66 Å
Deposited: 2023-02-06
Authors: Paternoga, H., Crowe-McAuliffe, C., Novacek, J., Wilson, D.N.
PDB entry 8cgw: Insulin-regulated aminopeptidase (IRAP) in complex with an allosteric benzopyran-based inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.03 Å
Deposited: 2023-02-06
Authors: Mpakali, A., Stratikos, E., Giastas, P.
PDB entry 8cgx: structure of HEX-1 from N. crassa crystallized in cellulo, diffracted at 100K and resolved using XDS
Classification: STRUCTURAL PROTEIN
Source organism: Neurospora crassa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-02-06
Authors: Boger, J., Schoenherr, R., Lahey-Rudolph, J.M., Harms, M., Kaiser, J., Nachtschatt, S., Wobbe, M., Koenig, P., Bourenkov, G., Schneider, T., Redecke, L.
PDB entry 8cgy: Trypanosoma brucei IMP dehydrogenase (ori) crystallized in High Five cells reveals native ligands ATP, GDP and phosphate. Diffraction data collection at 100 K in cellulo; XDS processing
Classification: TRANSFERASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-02-06
Authors: Boger, J., Schoenherr, R., Lahey-Rudolph, J.M., Harms, M., Kaiser, J., Nachtschatt, S., Wobbe, M., Duden, R., Bourenkov, G., Schneider, T., Redecke, L.
PDB entry 8cgz: tubulin-AB8939 complex
Classification: CELL CYCLE
Source organism: Ovis aries; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.527 Å
Deposited: 2023-02-06
Authors: Varela, P.F., Gigant, B.
PDB entry 8ch0: Crystal structure of an 8-repeat consensus TPR superhelix with Gadolinium.
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-06
Authors: Liutkus, M., Rojas, A.L., Cortajarena, A.L.
PDB entry 8ch1: PBP AccA from A. vitis S4 in complex with Agrocinopine A
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium vitis S4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.496 Å
Deposited: 2023-02-06
Authors: Morera, S., Vigouroux, A.
PDB entry 8ch2: PBP AccA from A. vitis S4 in complex with L-arabinose-2-phosphate (A2P)
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium vitis S4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.404 Å
Deposited: 2023-02-06
Authors: Morera, S., Deicsics, G., Vigouroux, A.
PDB entry 8ch3: PBP AccA from A. vitis S4 in complex with Agrocinopine C-like
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium vitis S4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.398 Å
Deposited: 2023-02-06
Authors: Morera, S., Vigouroux, A.
PDB entry 8ch4: Crystal structure of the ring cleaving dioxygenase 5-nitrosalicylate 1,2-dioxygenase from Bradyrhizobium sp.
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. JS329
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-07
Authors: Ferraroni, M., Stolz, A., Eppinger, E.
PDB entry 8ch5: Cryo-EM structure of the fd bacteriophage capsid major coat protein pVIII
Classification: VIRUS
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-07
Authors: Boehning, J., Bharat, T.A.M.
PDB entry 8ch6: Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).
Classification: SPLICING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2023-02-07
Authors: Cretu, C., Schmitzova, J., Pena, V.
PDB entry 8ch7: RDC-refined Interleukin-4 (wild type) pH 5.6
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-02-07
Authors: Vaz, D.C., Rodrigues, J.R., Loureiro-Ferreira, N., Mueller, T., Sebald, W., Redfield, C., Brito, R.M.M.
PDB entry 8ch8: Crystal structure of the human PXR ligand-binding domain in complex with liranaftate
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-02-07
Authors: Carivenc, C., Derosa, Q., Grimaldi, M., Boulahtouf, A., Balaguer, P., Bourguet, W.
PDB entry 8ch9: Crystal structure of arsenite oxidase from Alcaligenes faecalis (Af Aio) bound to arsenic oxyanion
Classification: OXIDOREDUCTASE
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-02-07
Authors: Engrola, F., Correia, M.A.S., Romao, M.J., Santos-Silva, T.
PDB entry 8cha: Fc gamma RIIa 27W/131H variant ectodomain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-02-07
Authors: Foy, E.G., Thomsen, M., Goldman, A., Robinson, J.I.
PDB entry 8chb: Inward-facing conformation of the ABC transporter BmrA C436S/A582C cross-linked mutant
Classification: MEMBRANE PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-02-07
Authors: Di Cesare, M., Kaplan, E., Hanssen, E., Valimehr, S., Orelle, C., Jault, J.M.
PDB entry 8chc: PBP AccA from A. vitis S4 in complex with Agrocinopine D-like
Classification: TRANSPORT PROTEIN
Source organism: Allorhizobium ampelinum S4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.679 Å
Deposited: 2023-02-07
Authors: Morera, S., Vigouroux, A., Deicsics, G.
PDB entry 8chd: NtUGT1 in two conformations
Classification: TRANSFERASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-02-07
Authors: Fredslund, F., Teze, D., Adams, P.D., Welner, D.H.
PDB entry 8che: TLT-1 binding Fab of the bispecific antibody HMB-001 in complex with the TLT-1 stalk peptide
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-02-07
Authors: Johansson, E., Schluckebier, G.
PDB entry 8chf: cryo-EM Structure of Craf:14-3-3:Mek1
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Spodoptera frugiperda
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.25 Å
Deposited: 2023-02-07
Authors: Dedden, D., Ulrich, G.
PDB entry 8chg: SH3 domain solved by the exact solid-state method from the Bruker Dynamics Center using the correction for dipolar truncation with PDB 2NUZ
Classification: PEPTIDE BINDING PROTEIN
Source organism: Gallus gallus
Experimental method: SOLID-STATE NMR
Deposited: 2023-02-08
Authors: Soeldner, B.
PDB entry 8chh: SH3 domain solved by the exact solid-state method from the Bruker Dynamics Center using the correction method for spin-diffusion with PDB 2NUZ as reference
Classification: PEPTIDE BINDING PROTEIN
Source organism: Gallus gallus
Experimental method: SOLID-STATE NMR
Deposited: 2023-02-08
Authors: Soeldner, B.
PDB entry 8chi: Human FKBP12 in complex with (1S,5S,6R)-10-((S)-3,5-dichloro-N-methylphenylsulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-02-08
Authors: Meyners, C., Purder, P.L., Hausch, F.
PDB entry 8chj: Human FKBP12 in complex with (1S,5S,6R)-10-((R)-(3,5-dichlorophenyl)sulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.697 Å
Deposited: 2023-02-08
Authors: Meyners, C., Purder, P.L., Hausch, F.
PDB entry 8chk: Human FKBP12 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-02-08
Authors: Meyners, C., Purder, P.L., Hausch, F.
PDB entry 8chl: Human FKBP12 in complex with (1S,5S,6R)-9-((3,5-dichlorophenyl)sulfonyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,9-diazabicyclo[4.2.1]nonan-2-one
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-02-08
Authors: Meyners, C., Purder, P.L., Hausch, F.
PDB entry 8chm: Human FKBP12 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfinyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2023-02-08
Authors: Meyners, C., Purder, P.L., Hausch, F.