LiteFold/PDB huggingface dataset:
PDB entry 8u2y: Solution structure of the PHD6 finger of MLL4 bound to TET3
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-09-06
Authors: Mohid, S.A., Zandian, M., Zhang, Y., Kutateladze, T.G.
PDB entry 8u2z: TRPV1 in nanodisc bound with diC8-PIP2 in the dilated state
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-06
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8u30: TRPV1 in nanodisc bound with diC8-PIP2 in the closed state
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-06
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8u31: Crystal structure of PD-1 in complex with a Fab
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-09-07
Authors: Sun, D., Masureel, M.
PDB entry 8u32: Crystal structure of PD-1 in complex with a Fab
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-09-07
Authors: Sun, D., Masureel, M.
PDB entry 8u33: Crystal structure of KAI2 S95C mutant
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-09-07
Authors: Davies, S.F., Waters, M.T., Bond, C.S.
PDB entry 8u36: The crystal structure of the classical binding interface of Importin alpha 2 and a nuclear localisation signal sequence in Frog siadenovirus core protein VII
Classification: VIRAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-09-07
Authors: Athukorala, A., Donnelly, C.M., Forwood, J.K., Sarker, S.
PDB entry 8u37: Crystal structure of the catalytic domain of human PKC alpha (D463N, V568I, S657E) in complex with NVP-CJL037 at 2.48-A resolution
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-09-07
Authors: Romanowski, M.J., Lam, J., Visser, M.
PDB entry 8u38: Structure of a bacterial multi-ubiquitin domain protein
Classification: PROTEIN BINDING
Source organism: Methylobacterium brachiatum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2023-09-07
Authors: Ye, Q., Gong, M., Corbett, K.D.
PDB entry 8u39: Structure of Human Mitochondrial Chaperonin V72I mutant
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-07
Authors: Chen, L., Wang, J.
PDB entry 8u3a: TRPV1 in nanodisc bound with PI-Br4 bound in Conformation 1 (monomer)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-09-07
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8u3b: Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2A
Classification: transcription/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-09-07
Authors: Liu, B., Kompaniiets, D., Wang, D.
PDB entry 8u3c: TRPV1 in nanodisc bound with PI-Br4 bound in Conformation 2 (monomer)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-09-07
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8u3d: Structure of Apo Sialin at pH7.5
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-09-07
Authors: Schmiege, P., Li, X.
PDB entry 8u3e: Structure of Apo Sialin at pH5.0
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-09-07
Authors: Schmiege, P., Li, X.
PDB entry 8u3f: Structure of Apo Sialin R168K mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-09-07
Authors: Schmiege, P., Li, X.
PDB entry 8u3g: Structure of NAAG-bound Sialin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2023-09-07
Authors: Schmiege, P., Li, X.
PDB entry 8u3h: Structure of Fmoc-Leu-OH bound Sialin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-09-07
Authors: Schmiege, P., Li, X.
PDB entry 8u3j: TRPV1 in nanodisc bound with empty vanilloid binding pocket at 4C
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-07
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8u3k: DdmDE handover complex
Classification: IMMUNE SYSTEM/DNA
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-09-07
Authors: Bravo, J.P.K.
PDB entry 8u3l: TRPV1 in nanodisc bound with empty vanilloid binding pocket at 25C
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-07
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8u3m: The FARFAR-MD-NMR ensemble of an HIV-1 TAR excited state
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-09-07
Authors: Geng, A., Ganser, L., Roy, R., Shi, H., Pratihar, S., Case, D.A., Al-Hashimi, H.M.
PDB entry 8u3n: Structure of P450Blt from Micromonospora sp. MW-13
Classification: OXIDOREDUCTASE
Source organism: Micromonospora sp. MW-13
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-09-08
Authors: Hansen, M.H., Cryle, M.J., Zhao, Y.
PDB entry 8u3o: SARS-CoV-2 Main Protease A173V in complex with CDD-1819
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-09-08
Authors: Nnabuife, C., Palzkill, T.
PDB entry 8u3p: 1.79 Angstrom resolution crystal structure of KatG from Mycobacterium tuberculosis with an MYW cofactor after heat incubation for 60 minutes
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-09-08
Authors: Liu, A., Li, J., Ran, D.
PDB entry 8u3s: Structure of human TIRR in complex with VHH4 nanobody
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-08
Authors: Botuyan, M.V., Mer, G.
PDB entry 8u3y: SpG Cas9 with NGG PAM DNA target
Classification: IMMUNE SYSTEM/DNA/RNA
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-08
Authors: Bravo, J.P.K., Hibshman, G.N., Taylor, D.W.
PDB entry 8u3z: Model of TTLL6 bound to microtubule from composite map
Classification: LIGASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-08
Authors: Mahalingan, K.K., Grotjahn, D., Li, Y., Lander, G.C., Zehr, E.A., Roll-Mecak, A.
PDB entry 8u40: Crystal structure of main protease of SARS-CoV-2 complexed with inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-08
Authors: Chen, P., Arutyunova, E., Lu, J., Young, H.S., Lemieux, M.J.
PDB entry 8u41: OvsA from Halomonas utahensis, an ovoselenol-biosynthetic selenoxide synthase in complex with histidine
Classification: OXIDOREDUCTASE
Source organism: Halomonas utahensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-09-08
Authors: Ireland, K.A., Davis, K.M.
PDB entry 8u42: OvsA from Halomonas utahensis, a selenoxide synthase involved in ovoselenol biosynthesis
Classification: OXIDOREDUCTASE
Source organism: Halomonas utahensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-08
Authors: Ireland, K.A., Davis, K.M.
PDB entry 8u43: TRPV1 in nanodisc bound with PIP2-Br4
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-09-08
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8u44: CryoEM structure of A/Solomon Islands/3/2006 H1 HA in complex with 05.GC.w2.3C10-H1_SI06
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-09-08
Authors: Moore, N., Han, J., Ward, A.B., Wilson, I.A.
PDB entry 8u45: Crystal Structure Analysis of Aspergillus fumigatus alkaline protease
Classification: HYDROLASE
Source organism: Aspergillus fumigatus Af293
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-08
Authors: Fernandez, D., Diec, D.D.L., Guo, W., Russi, S.
PDB entry 8u46: Crystal structure of Bacteroides thetaiotaomicron VPI-5482 Endoglycosidase BT1285 D161A-E163A inactive version
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-09
Authors: Sastre, D.E., Sultana, N., Sundberg, E.J.
PDB entry 8u47: Crystal structure of Bacteroides thetaiotaomicron VPI-5482 Endoglycosidase BT1285
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2023-09-09
Authors: Sastre, D.E., Sultana, N., Sundberg, E.J.
PDB entry 8u48: Crystal structure of Bacteroides thetaiotamicron BT1285 D161A-E163A inactive Endoglycosidase in complex with high-mannose N-glycan (Man9GlcNAc2) substrate
Classification: CARBOHYDRATE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-09
Authors: Sastre, D.E., Sultana, N., Navarro, M.V.A.S., Sundberg, E.J.
PDB entry 8u49: The Apo Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9
Classification: HYDROLASE
Source organism: Bacillus licheniformis DSM 13 = ATCC 14580
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-10
Authors: Araujo, E.A., Polikarpov, I.
PDB entry 8u4a: Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellotriose
Classification: HYDROLASE
Source organism: Bacillus licheniformis DSM 13 = ATCC 14580
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-09-10
Authors: Araujo, E.A., Polikarpov, I.
PDB entry 8u4b: Cryo-EM structure of long form insulin receptor (IR-B) in the apo state
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-09-10
Authors: An, W., Hall, C., Li, J., Huang, A., Wu, J., Park, J., Bai, X.C., Choi, E.
PDB entry 8u4c: Cryo-EM structure of long form insulin receptor (IR-B) with four IGF2 bound, symmetric conformation.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-10
Authors: An, W., Hall, C., Li, J., Huang, A., Wu, J., Park, J., Bai, X.C., Choi, E.
PDB entry 8u4d: TRPV1 in nanodisc bound with PI-Br4, consensus structure
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-09-10
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8u4e: Cryo-EM structure of long form insulin receptor (IR-B) with three IGF2 bound, asymmetric conformation.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-09-10
Authors: An, W., Hall, C., Li, J., Huang, A., Wu, J., Park, J., Bai, X.C., Choi, E.
PDB entry 8u4f: Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellohexaose
Classification: HYDROLASE
Source organism: Bacillus licheniformis DSM 13 = ATCC 14580
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-09-10
Authors: Araujo, E.A., Polikarpov, I.
PDB entry 8u4i: Structure of the HER4/NRG1b Homodimer Extracellular Domain
Classification: MEMBRANE PROTEIN, TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2023-09-10
Authors: Trenker, R., Diwanji, D., Bingham, T., Verba, K.A., Jura, N.
PDB entry 8u4j: Structure of the HER4/BTC Homodimer Extracellular Domain
Classification: MEMBRANE PROTEIN, TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-10
Authors: Trenker, R., Diwanji, D., Bingham, T., Verba, K.A., Jura, N.
PDB entry 8u4k: Structure of the HER2/HER4/BTC Heterodimer Extracellular Domain
Classification: MEMBRANE PROTEIN, TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.27 Å
Deposited: 2023-09-10
Authors: Trenker, R., Diwanji, D., Bingham, T., Verba, K.A., Jura, N.
PDB entry 8u4l: Structure of the HER2/HER4/NRG1b Heterodimer Extracellular Domain
Classification: MEMBRANE PROTEIN, TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-09-10
Authors: Trenker, R., Diwanji, D., Bingham, T., Verba, K.A., Jura, N.
PDB entry 8u4n: Structure of Apo CXCR4/Gi complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2023-09-11
Authors: Saotome, K., McGoldrick, L.L., Franklin, M.C.
PDB entry 8u4o: Structure of CXCL12-bound CXCR4/Gi complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-09-11
Authors: Saotome, K., McGoldrick, L.L., Franklin, M.C.
PDB entry 8u4p: Structure of AMD3100-bound CXCR4/Gi complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-09-11
Authors: Saotome, K., McGoldrick, L.L., Franklin, M.C.
PDB entry 8u4q: Structure of REGN7663 Fab-bound CXCR4/Gi complex
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-09-11
Authors: Saotome, K., McGoldrick, L.L., Franklin, M.C.
PDB entry 8u4r: Structure of REGN7663-Fab bound CXCR4
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-11
Authors: Saotome, K., McGoldrick, L.L., Franklin, M.C.
PDB entry 8u4s: Structure of trimeric CXCR4 in complex with REGN7663 Fab
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-09-11
Authors: Saotome, K., McGoldrick, L.L., Franklin, M.C.
PDB entry 8u4t: Structure of tetrameric CXCR4 in complex with REGN7663 Fab
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2023-09-11
Authors: Saotome, K., McGoldrick, L.L., Franklin, M.C.
PDB entry 8u4u: Crystal structure of 53BP1 tandem Tudor domain homodimer engineered with two disulfide bridges
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.79 Å
Deposited: 2023-09-11
Authors: Cui, G., Botuyan, M.V., Thompson, J.R., Mer, G.
PDB entry 8u4v: Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-1, and Nanobody
Classification: MEMBRANE PROTEIN
Source organism: Clostridium perfringens; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-09-11
Authors: Vecchio, A.J.
PDB entry 8u4w: The crystal structure of a helical domain deleted PARP1 in complex with isoindolinone based inhibitor.
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2023-09-11
Authors: Marcotte, D.J.
PDB entry 8u4x: Cryo-EM structure of PsBphP in Pr state
Classification: PLANT PROTEIN
Source organism: Pseudomonas syringae pv. tomato str. DC3000
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-09-11
Authors: Basore, K., Burgie, E.S., Vierstra, D.
PDB entry 8u4y: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) L50F Mutant
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-09-11
Authors: Kohaal, N., Lewandowski, E.M., Wang, J., Chen, Y.
PDB entry 8u4z: Klebsiella pneumoniae encapsulin-associated DyP peroxidase
Classification: OXIDOREDUCTASE
Source organism: Klebsiella pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2023-09-11
Authors: Andreas, M.P., Jones, J.A., Giessen, T.W.
PDB entry 8u50: Klebsiella pneumoniae DyP peroxidase-loaded encapsulin shell
Classification: VIRUS LIKE PARTICLE
Source organism: Klebsiella pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2023-09-11
Authors: Andreas, M.P., Jones, J.A., Giessen, T.W.
PDB entry 8u51: Klebsiella pneumoniae SUMO-loaded encapsulin shell
Classification: VIRUS LIKE PARTICLE
Source organism: Klebsiella pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2023-09-11
Authors: Andreas, M.P., Jones, J.A., Giessen, T.W.
PDB entry 8u52: Co-crystal structure of human transthyretin conjugated to the stilbene substructure derived from reaction with the fluorogenic covalent kinetic stabilizer A2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-11
Authors: Yan, N.L., Nugroho, K., Kline, G.M., Basanta, B., Lander, G.C., Wilson, I.A., Kelly, J.W.
PDB entry 8u53: Mechanically activated ion channel OSCA3.1 in nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-09-12
Authors: Jojoa-Cruz, S., Lee, W.H., Ward, A.B.
PDB entry 8u54: The mTORC1 cholesterol sensor LYCHOS (GPR155)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-09-12
Authors: Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 8u55: Crystal structure of Enterococcus faecium EnGen25 Penicillin-binding protein 5 (PBP5)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Enterococcus faecium EnGen0025
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-12
Authors: Pemberton, O.A., Shamoo, Y.
PDB entry 8u56: The mTORC1 cholesterol sensor LYCHOS (GPR155)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-09-12
Authors: Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 8u57: PPARg LBD in complex with perfluorooctanoic acid (PFOA)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-12
Authors: Pederick, J.L., Frkic, R.L., McDougal, D.P., Bruning, J.B.
PDB entry 8u58: The mTORC1 cholesterol sensor LYCHOS (GPR155) with tryptophan
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2023-09-12
Authors: Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 8u59: EcDsbA soaked with N-(2-fluorophenyl)-5-methylisoxazole-3-carboxamide and N-(4-(thiophen-3-yl)benzyl)cyclohexanamine
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-09-12
Authors: Wang, G., Heras, B.
PDB entry 8u5a: Improving protein expression, stability, and function with ProteinMPNN
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-12
Authors: Kalvet, I., Bera, A.K., Baker, D.
PDB entry 8u5b: Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain and sFab COP-1
Classification: MEMBRANE PROTEIN
Source organism: Clostridium perfringens; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-09-12
Authors: Vecchio, A.J.
PDB entry 8u5c: The mTORC1 cholesterol sensor LYCHOS (GPR155) with cholesterol
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-09-12
Authors: Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 8u5d: Crystal Structure of C-terminal domain of Clostridium perfringens Enterotoxin in Space Group P 41 21 2
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-09-12
Authors: Kapoor, S., Vecchio, A.J.
PDB entry 8u5e: Crystal Structure of C-terminal domain of Clostridium perfringens Enterotoxin in Space Group P 21 21 21
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-12
Authors: Kapoor, S., Vecchio, A.J.
PDB entry 8u5f: Crystal Structure of Trypsinized Clostridium perfringens Enterotoxin
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-09-12
Authors: Kapoor, S., Ogbu, C.P., Vecchio, A.J.
PDB entry 8u5g: Crystal structure of the co-expressed SDS22:PP1:I3 complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-09-12
Authors: Choy, M.S., Peti, W., Page, R.
PDB entry 8u5h: Cryo-EM structure of human DNMT3A UDR bound to H2AK119ub1-modified nucleosome
Classification: STRUCTURAL PROTEIN/TRANSFERASE/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-09-12
Authors: Chen, X., Song, J.
PDB entry 8u5i: Crystal Structure of human IDO1 bound to Compound 23
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-09-12
Authors: Steinbacher, S., Lammens, A., Harris, S.F.
PDB entry 8u5j: Structure of Mango III variant aptamer bound to T01-07M-B
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-12
Authors: Passalacqua, L.F.M., Ferre-D'Amare, A.R.
PDB entry 8u5k: Structure of Mango II aptamer bound to T01-6A
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-09-12
Authors: Passalacqua, L.F.M., Ferre-D'Amare, A.R.
PDB entry 8u5l: MAU868, a novel human-derived monoclonal neutralizing antibody targeting BK virus VP1
Classification: Viral Protein/Immune System
Source organism: Betapolyomavirus hominis; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-09-12
Authors: Knapp, M.S., Ornelas, E.
PDB entry 8u5m: Structure of Sts-1 HP domain with rebamipide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-09-12
Authors: Azia, F., Dey, R., French, J.B.
PDB entry 8u5n: The mTORC1 cholesterol sensor LYCHOS (GPR155) - monomer with auxin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-12
Authors: Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 8u5o: The structure of the catalytic domain of NanI sialdase in complex with Neu5Gc
Classification: HYDROLASE
Source organism: Clostridium perfringens ATCC 13124
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-12
Authors: Medley, B.J., Low, K.E., Garber, J.M., Gray, T.E., Liu, L., Klassen, L., Fordwour, O.B., Inglis, G.D., Boons, G.J., Zandberg, W.F., Abbott, W.D., Boraston, A.B.
PDB entry 8u5p: Structure of Mango II aptamer bound to T01-6A-B
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-09-12
Authors: Passalacqua, L.F.M., Ferre-D'Amare, A.R.
PDB entry 8u5q: The mTORC1 cholesterol sensor LYCHOS (GPR155) - dimer with auxin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-09-12
Authors: Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 8u5r: Structure of Mango II variant aptamer bound to T01-6A
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-09-12
Authors: Passalacqua, L.F.M., Ferre-D'Amare, A.R.
PDB entry 8u5t: Structure of Mango II variant aptamer bound to T01-6A-B
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-12
Authors: Passalacqua, L.F.M., Ferre-D'Amare, A.R.
PDB entry 8u5v: The mTORC1 cholesterol sensor LYCHOS (GPR155) - auxin bound, closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-09-13
Authors: Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 8u5w: De novo designed pentameric helical bundle protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-09-13
Authors: Bick, M.J., Xu, C., Sankaran, B., Baker, D.
PDB entry 8u5x: The mTORC1 cholesterol sensor LYCHOS (GPR155) - auxin bound, open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-09-13
Authors: Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 8u5y: human RADX trimer bound to ssDNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-09-13
Authors: Balakrishnan, S., Chazin, W.J.
PDB entry 8u5z: Structure of Mango II variant aptamer bound to T01-7M-B
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-09-13
Authors: Passalacqua, L.F.M., Ferre-D'Amare, A.R.
PDB entry 8u60: Structure of Mango II variant2 aptamer bound to T01-6A
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-09-13
Authors: Passalacqua, L.F.M., Ferre-D'Amare, A.R.
PDB entry 8u61: Human RADX tetramer bound to ssDNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-09-13
Authors: Balakrishnan, S., Chazin, W.J.
PDB entry 8u62: Cryo-EM structure of PsBphP in Pfr state, Dimer of Dimers FL
Classification: PLANT PROTEIN
Source organism: Pseudomonas syringae pv. tomato str. DC3000
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-13
Authors: Basore, K., Burgie, E.S., Vierstra, D.
PDB entry 8u63: Cryo-EM structure of PsBphP in Pfr state, Dimer of Dimers PSM only
Classification: PLANT PROTEIN
Source organism: Pseudomonas syringae pv. tomato str. DC3000
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-09-13
Authors: Basore, K., Burgie, E.S., Vierstra, D.
PDB entry 8u64: Cryo-EM structure of PsBphP in Pfr state, medial PSM only
Classification: PLANT PROTEIN
Source organism: Pseudomonas syringae pv. tomato str. DC3000
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-09-13
Authors: Basore, K., Burgie, E.S., Vierstra, D.
PDB entry 8u65: Cryo-EM structure of PsBphP in Pfr state, splayed PSM only
Classification: PLANT PROTEIN
Source organism: Pseudomonas syringae pv. tomato str. DC3000
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-09-13
Authors: Basore, K., Burgie, E.S., Vierstra, D.
PDB entry 8u66: Firmicutes Rubisco
Classification: LYASE
Source organism: Bacillota
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Deposited: 2023-09-13
Authors: Kaeser, B.P., Liu, A.K., Shih, P.M.
PDB entry 8u69: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-chloro-5-(4-chloro-2-(2-(5-chloro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)benzonitrile (JLJ334), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-09-13
Authors: Hollander, K., Carter, Z., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6a: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (JLJ729), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2023-09-13
Authors: Hollander, K., Carter, Z., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6b: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(4-chloro-3-(3-chloro-5-cyanophenoxy)phenethyl)acrylamide (JLJ731), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-09-13
Authors: Hollander, K., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6c: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 2-chloro-N-(4-chloro-3-(3-chloro-5-cyanophenoxy)phenethyl)acetamide (JLJ732), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-09-13
Authors: Hollander, K., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6d: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(4-chloro-3-(3-chloro-5-cyanophenoxy)phenoxy)ethyl)-N-methylacrylamide (JLJ736), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN/Inhibitor
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-09-13
Authors: Hollander, K., Carter, Z., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6e: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(4-chloro-3-(3-chloro-5-cyanophenoxy)phenethyl)-N-methylacrylamide (JLJ738), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6f: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(5-chloro-2-(3-chloro-5-cyanophenoxy)phenoxy)ethyl)-N-methylacrylamide (JLJ742), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-09-13
Authors: Prucha, G., Carter, Z., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6g: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-(2-(2-(3-acryloyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)ethoxy)-4-chlorophenoxy)-5-chlorobenzonitrile (JLJ744), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2023-09-13
Authors: Prucha, G., Carter, Z., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6h: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-(2-(2-(3-acryloyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)ethoxy)-4-chlorophenoxy)-5-chlorobenzonitrile (JLJ744), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1 BH10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-09-13
Authors: Prucha, G., Carter, Z., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6i: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(2-((2-cyanoindolizin-8-yl)oxy)phenoxy)ethyl)-N-methylacrylamide (JLJ745), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6j: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(5-chloro-2-((2-cyanoindolizin-8-yl)oxy)phenoxy)ethyl)-N-methylacrylamide (JLJ746), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6k: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(2-((6-cyanonaphthalen-1-yl)oxy)phenoxy)ethyl)-N-methylacrylamide (JLJ747), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6l: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(5-chloro-2-((6-cyanonaphthalen-1-yl)oxy)phenoxy)ethyl)-N-methylacrylamide (JLJ748), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.486 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6m: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with N-(2-(2-((6-chloro-2-cyanoindolizin-8-yl)oxy)phenoxy)ethyl)-N-methylacrylamide (JLJ751), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6n: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-(2-((6-cyanonaphthalen-1-yl)oxy)phenoxy)-N,N-dimethylpropanamide (JLJ752), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1 BH10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6o: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with5-(2-(3-oxo-3-(pyrrolidin-1-yl)propoxy)phenoxy)-2-naphthonitrile (JLJ753), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6p: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-(2-((2-cyanoindolizin-8-yl)oxy)phenoxy)-N,N-dimethylpropanamide (JLJ754), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6q: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 8-(2-(3-oxo-3-(pyrrolidin-1-yl)propoxy)phenoxy)indolizine-2-carbonitrile (JLJ755), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6r: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-(2-((2-cyanoindolizin-8-yl)oxy)phenoxy)-N-(2,2-difluoroethyl)propanamide (JLJ756), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6s: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 8-(2-(3-morpholino-3-oxopropoxy)phenoxy)indolizine-2-carbonitrile (JLJ757), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6t: Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 5-(2-(2-(3-acryloyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)ethoxy)phenoxy)-2-naphthonitrile (JLJ758), a non-nucleoside inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-09-13
Authors: Prucha, G., Henry, S., Jorgensen, W.L., Anderson, K.S.
PDB entry 8u6x: ATP-dependent DNA ligase Lig E from Neisseria gonorrhoeae
Classification: LIGASE/DNA
Source organism: Neisseria gonorrhoeae MS11; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-09-14
Authors: Williamson, A., Pan, J.
PDB entry 8u6y: Preholo-Proteasome from Beta 3 D205 deletion
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-14
Authors: Walsh Jr., R.M., Rawson, S., Velez, B., Blickling, M., Razi, A., Hanna, J.
PDB entry 8u6z: SLC9C1 at pH 8 in presence of K+
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-09-14
Authors: Chowdhury, S., Pal, K.
PDB entry 8u70: Crystal structure of malaria transmission-blocking anti-Pfs48/45 antibody RUPA-58.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2023-09-14
Authors: Hailemariam, S., Ivanochko, D., Julien, J.P.
PDB entry 8u71: Structure of sea urchin SLC9C1 at pH 8 in Na+
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-09-14
Authors: Chowdhury, S., Pal, K.
PDB entry 8u72: Cryo-EM structure of the SPARTA oligomer with guide RNA and target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-09-14
Authors: Malik, R., Kottur, J., Aggarwal, A.K.
PDB entry 8u73: R399A sea urchin SLC9C1 pH 8 in Na+
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-14
Authors: Chowdhury, S., Pal, K.
PDB entry 8u75: R399A mutant of sea urchin SLC9C1 at pH 6 in Na+ - Compressed state
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-14
Authors: Chowdhury, S., Pal, K.
PDB entry 8u77: Crystal structure of Taf14 in complex with Yng1
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-09-14
Authors: Nguyen, M.C., Wei, P.C., Zhang, G.Y., Kutateladze, T.G.
PDB entry 8u78: Structure of a N-Me-D-Gln4,Lys10-teixobactin analogue
Classification: ANTIBIOTIC
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-14
Authors: Nowick, J.S., Yang, H., Kreutzer, A.G.
PDB entry 8u79: Crystal Structure of Substrate Binding Protein of Thermus thermophilus TAXI-TRAP protein with L-glutamate
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2023-09-14
Authors: Antony, I.R., Currie, M., Dobson, R.
PDB entry 8u7b: Crystal structure of Apo form of Short Prokaryotic Argonaute TIR-APAZ (SPARTA) heterodimer
Classification: RNA BINDING PROTEIN
Source organism: Thermoflavifilum thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2023-09-15
Authors: Kottur, J., Aggarwal, A.K.
PDB entry 8u7c: Engineered NEMO minimal IKK-binding domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2023-09-15
Authors: Kennedy, A.E., Pellegrini, M.
PDB entry 8u7d: R399A mutant of sea urchin SLC9C1 at pH 6 in Na+ - Relaxed state
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-15
Authors: Chowdhury, S., Pal, K.
PDB entry 8u7e: Structure of Sts-1 HP domain with rebamipide derivative
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2023-09-15
Authors: Aziz, F., Dey, R., French, J.B.
PDB entry 8u7f: Crystal structure of CIB_12 beta-galactosidase from Cuniculiplasma divulgatum
Classification: HYDROLASE
Source organism: Cuniculiplasma divulgatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-09-15
Authors: Stogios, P.J., Skarina, T., Di Leo, R., Yakunin, A., Golyshin, P., Savchenko, A.
PDB entry 8u7g: Crystal structure of CIB_13 beta-galactosidase from Cuniculiplasma divulgatum
Classification: HYDROLASE
Source organism: Cuniculiplasma divulgatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2023-09-15
Authors: Stogios, P.J.
PDB entry 8u7h: Cryo-EM structure of LRRK2 bound to type I inhibitor GNE-7915
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-09-15
Authors: Zhu, H., Sun, J.
PDB entry 8u7i: Structure of the phage immune evasion protein Gad1 bound to the Gabija GajAB complex
Classification: VIRAL PROTEIN
Source organism: Bacillus cereus VD045; Bacillus phage phi3T
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-09-15
Authors: Antine, S.P., Johnson, A.G., Mooney, S.E., Mayer, M.L., Kranzusch, P.J.
PDB entry 8u7j: Crystal Structure of Staphylococcus aureus PLP synthase complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2023-09-15
Authors: Barra, A.L.C., Brognaro, H., Betzel, C., Nascimento, A.S.
PDB entry 8u7k: WT sea urchin SLC9C1 with 5mM cAMP at pH 6 in Na+ - Grip (G) conformation
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-09-15
Authors: Chowdhury, S., Pal, K.
PDB entry 8u7l: Cryo-EM structure of LRRK2 bound to type II inhibitor GZD824
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-15
Authors: Zhu, H., Sun, J.
PDB entry 8u7m: Human retinal variant phosphomimetic IMPDH1(595)-S477D free octamer bound by GTP, ATP, IMP, and NAD+
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-15
Authors: Calise, S.J., Kollman, J.M.
PDB entry 8u7o: WT sea urchin SLC9C1 with 5mM cAMP at pH 6 in Na+ - Grip and Twist (GnT) conformation
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-09-15
Authors: Chowdhury, S., Pal, K.
PDB entry 8u7p: WT sea urchin SLC9C1 with 5mM cAMP at pH 6 in Na+ - Grip and Twist Like (GnTL) conformation
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-09-15
Authors: Chowdhury, S., Pal, K.
PDB entry 8u7q: Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, octamer-centered
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-15
Authors: Calise, S.J., Kollman, J.M.
PDB entry 8u7r: WT sea urchin SLC9C1 at pH 6 in presence of K+
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-15
Authors: Chowdhury, S., Pal, K.
PDB entry 8u7s: SLC9C1 at pH 6 in presence of Na+
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2023-09-15
Authors: Chowdhury, S., Pal, K.
PDB entry 8u7t: Substrate-bound Cdc48, Class 1
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-15
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Lin, H.J.L., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8u7u: Proteasome 20S Core Particle from Beta 3 D205 deletion
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.16 Å
Deposited: 2023-09-15
Authors: Walsh Jr., R.M., Rawson, S., Velez, B., Blickling, M., Razi, A., Hanna, J.
PDB entry 8u7v: Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, interface-centered
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-15
Authors: Calise, S.J., Kollman, J.M.
PDB entry 8u7w: Crystal structure of non-receptor protein tyrosine phosphatase SHP2 in complex with inhibitor compound 7
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-09-15
Authors: Mou, T.C.
PDB entry 8u7x: Crystal structure of non-receptor protein tyrosine phosphatase SHP2 in complex with inhibitor compound 24
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2023-09-15
Authors: Mou, T.C.
PDB entry 8u7y: Structural Basis of Human NOX5 Activation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.06 Å
Deposited: 2023-09-15
Authors: Cui, C., Jiang, M., Sun, J.
PDB entry 8u7z: KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinment of KCTD5(CTD)/Gbeta1gamma2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-09-15
Authors: Kuntz, D.A., Nguyen, D.M., Narayanan, N., Prive, G.G.
PDB entry 8u80: KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinment of KCTD5(BTB)/Cullin3(NTD)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-15
Authors: Kuntz, D.A., Nguyen, D.M., Narayanan, N., Prive, G.G.
PDB entry 8u81: KCTD5/Cullin3/Gbeta1gamma2 Complex: State A From Composite RELION Multi-body Refinement Map
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2023-09-15
Authors: Kuntz, D.A., Nguyen, D.M., Narayanan, N., Prive, G.G.
PDB entry 8u82: KCTD5/Cullin3/Gbeta1gamma2 Complex: State B From Composite RELION Multi-body Refinement Map
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2023-09-15
Authors: Kuntz, D.A., Nguyen, D.M., Narayanan, N., Prive, G.G.
PDB entry 8u83: KCTD5/Cullin3/Gbeta1gamma2 Complex: State C From Composite RELION Multi-body Refinement Map
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.975 Å
Deposited: 2023-09-15
Authors: Kuntz, D.A., Nguyen, D.M., Narayanan, N., Prive, G.G.