LiteFold/PDB huggingface dataset:
PDB entry 8s1m: Crystal structure of human GABARAP fused to EGFR (1076-1099)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-02-15
Authors: Ueffing, A., Willbold, D., Weiergraeber, O.H.
PDB entry 8s1n: Crystal structure of human Rac1-GDP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-15
Authors: Ferrandez, Y., Nawrotek, A., Cherfils, J.
PDB entry 8s1o: Crystal structure of human Rac1-GDP-Pi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-02-15
Authors: ferrandez, Y., Cherfils, J.
PDB entry 8s1p: YlmH bound to PtRNA-50S
Classification: RIBOSOME
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.96 Å
Deposited: 2024-02-15
Authors: Paternoga, H., Dimitrova-Paternoga, L., Wilson, D.N.
PDB entry 8s1r: Crystal structure of SHANK1 PDZ in complex with a SLiM internal ligand
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.979 Å
Deposited: 2024-02-15
Authors: Li, Y., Trinh, C.H., Wilson, A.J.
PDB entry 8s1t: BzdNO-cyclohexa-1,5-diene-1-carboxy-CoA complex
Classification: OXIDOREDUCTASE
Source organism: Azoarcus sp. CIB
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-02-16
Authors: Ermler, U., Boll, M., Fuchs, J., Demmer, U.
PDB entry 8s1u: YlmH bound to stalled 50S subunits with RqcH and PtRNA
Classification: RIBOSOME
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-16
Authors: Paternoga, H., Wilson, D.N.
PDB entry 8s1v: Crystal structure of full-lenght Renilla reniformis green fluorescent protein (GFP)
Classification: FLUORESCENT PROTEIN
Source organism: Renilla reniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.943 Å
Deposited: 2024-02-16
Authors: Marek, M., Nemergut, M., Smrckova, A.
PDB entry 8s1w: Structure of a quadruplex-duplex hybrid with a (-pd+l) loop progression
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2024-02-16
Authors: Vianney, Y.M., Jana, J., Weisz, K.
PDB entry 8s1x: Crystal structure of Actinonin-bound PDF1 and the computationally designed DBAct553_1 protein binder
Classification: DE NOVO PROTEIN
Source organism: Pseudomonas aeruginosa; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-02-16
Authors: Marchand, A., Pacesa, M., Correia, B.E.
PDB entry 8s1y: ThaOS V79A
Classification: LIGASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-16
Authors: Basle, A., Ashley, B., Campopiano, D.J., Marles-wright, J.
PDB entry 8s1z: Crystal structure of glycosylated human primary amine oxidase AOC3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2024-02-16
Authors: Guedez, G., Alix, M., Salminen, T.A.
PDB entry 8s24: Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-02-16
Authors: Naydenova, K., Randow, F.
PDB entry 8s2a: NMR structure of xantholysin A in micellar DPC solution
Classification: SURFACTANT PROTEIN
Source organism: Pseudomonas putida
Experimental method: SOLUTION NMR
Deposited: 2024-02-16
Authors: Kovacs, B., Geudens, N., Martins, J.C.
PDB entry 8s2b: NMR structure of putisolvin I in micellar DPC solution
Classification: SURFACTANT PROTEIN
Source organism: Pseudomonas putida
Experimental method: SOLUTION NMR
Deposited: 2024-02-16
Authors: Kovacs, B., Geudens, N., Martins, J.C.
PDB entry 8s2c: NMR structure of viscosin in micellar DPC solution
Classification: SURFACTANT PROTEIN
Source organism: Pseudomonas fluorescens SBW25
Experimental method: SOLUTION NMR
Deposited: 2024-02-16
Authors: Kovacs, B., Geudens, N., Martins, J.C.
PDB entry 8s2d: NMR structure of entolysin A in micellar DPC solution
Classification: SURFACTANT PROTEIN
Source organism: Pseudomonas entomophila L48
Experimental method: SOLUTION NMR
Deposited: 2024-02-16
Authors: Kovacs, B., Geudens, N., Martins, J.C.
PDB entry 8s2e: Fab4251-DS-SOSIP complex
Classification: VIRAL PROTEIN
Source organism: HIV whole-genome vector AA1305#18; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-02-17
Authors: Nortier, P., Perez, L.
PDB entry 8s2f: Crystal structure of Borrelia burgdorferi paralogous family 12 outer surface protein BBH37
Classification: DNA BINDING PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-02-17
Authors: Brangulis, K.
PDB entry 8s2m: Xenorhabdus bovienii Rhs C-terminal toxin TreX complex with TriX immunity protein
Classification: TOXIN
Source organism: Xenorhabdus bovienii SS-2004
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2024-02-18
Authors: Jurenas, D., Terradot, L.
PDB entry 8s2n: Xenorhabdus bovienii Rhs toxin TreTu complex with TrxA and TriTu immunity protein
Classification: TOXIN
Source organism: Escherichia coli str. K-12 substr. MG1655; Xenorhabdus bovienii SS-2004
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-02-18
Authors: Jurenas, D., Terradot, L.
PDB entry 8s2p: Crystal structure of Borrelia burgdorferi paralogous family 12 outer surface protein BBH37 (space group p21)
Classification: DNA BINDING PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-02-18
Authors: Brangulis, K.
PDB entry 8s2q: High pH (8.0) as-isolated MSOX movie series dataset 2 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [0.7 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2024-02-18
Authors: Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.
PDB entry 8s2r: BzdNO in partially coenzyme A - free state
Classification: OXIDOREDUCTASE
Source organism: Azoarcus sp. CIB
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-02-19
Authors: Ermler, U., Boll, M., Fuchs, J., Demmer, U.
PDB entry 8s2t: Cryo-EM structure of cell-free synthesized Human beta-1 adrenergic receptor cotranslationally inserted into a lipidic nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-02-19
Authors: Merino, F., Koeck, Z., Ermel, U., Dahlhaus, P., Doetsch, V., Kubicek, J., Frangakis, A.S., Hilger, D., Bernhard, F.
PDB entry 8s2u: SSX structure of Lysozyme grown in batch conditions
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-19
Authors: Stubbs, J., Tews, I., Maly, M.
PDB entry 8s2v: SSX structure of Lysozyme grown in microfluidic droplets
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-19
Authors: Stubbs, J., Tews, I., Maly, M.
PDB entry 8s2w: SSX structure of Arabidopsis thaliana Pdx1.3 grown in seeded batch conditions
Classification: LYASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-02-19
Authors: Stubbs, J., Tews, I., Maly, M.
PDB entry 8s2x: SSX structure of Arabidopsis thaliana Pdx1.3 grown in microfluidic droplets
Classification: LYASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-02-19
Authors: Stubbs, J., Tews, I., Maly, M.
PDB entry 8s2y: Crystal structure of alcohol oxidase PaAox1 from Picea abies
Classification: OXIDOREDUCTASE
Source organism: Picea abies
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-02-19
Authors: Kruhler, N., Haataja, T., Sandgren, M.
PDB entry 8s30: Crystal structure of human PLK1 Polo-Box Domain in complex with Mis18
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-02-19
Authors: Jeyaprakash, A.A., Medina-Pritchard, B.
PDB entry 8s31: Crystal structure of human PLK1 Polo-Box Domain in complex with Mis18BP1
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.134 Å
Deposited: 2024-02-19
Authors: Jeyaprakash, A.A., Medina-Pritchard, B.
PDB entry 8s32: GroEL with bound GroTAC peptide
Classification: CHAPERONE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-02-19
Authors: Wroblewski, K., Izert-Nowakowska, M.A., Goral, T.K., Klimecka, M.M., Kmiecik, S., Gorna, M.W.
PDB entry 8s33: Malic semialdehyde dehydrogenase (MSA-DH) from Acinetobacter baumannii
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-02-19
Authors: Piskol, F., Lukat, P., Blankenfeldt, W., Jahn, D., Moser, J.
PDB entry 8s34: Ferric-mycobactin receptor (FemA) in complex with aeruginic acid
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2024-02-19
Authors: Moynie, L.
PDB entry 8s35: DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state I)
Classification: ANTIVIRAL PROTEIN
Source organism: Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-02-19
Authors: Skorupskaite, A., Ragozius, V., Cepaite, R., Klein, N., Randau, L., Malinauskaite, L., Pausch, P.
PDB entry 8s36: DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state II)
Classification: ANTIVIRAL PROTEIN
Source organism: Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-02-19
Authors: Skorupskaite, A., Ragozius, V., Cepaite, R., Klein, N., Randau, L., Malinauskaite, L., Pausch, P.
PDB entry 8s37: DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state III)
Classification: ANTIVIRAL PROTEIN
Source organism: Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-02-19
Authors: Skorupskaite, A., Ragozius, V., Cepaite, R., Klein, N., Randau, L., Malinauskaite, L., Pausch, P.
PDB entry 8s38: Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with citrate and NAD
Classification: OXIDOREDUCTASE
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-02-19
Authors: Grzechowiak, M., Ruszkowski, M.
PDB entry 8s39: Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with isophthalic acid and NAD
Classification: OXIDOREDUCTASE
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-19
Authors: Grzechowiak, M., Ruszkowski, M.
PDB entry 8s3a: Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 2,6-pyridinedicarboxylic acid and NAD
Classification: OXIDOREDUCTASE
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-02-19
Authors: Grzechowiak, M., Ruszkowski, M.
PDB entry 8s3b: Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 3-(1H-Tetrazol-5-yl)benzoic acid and NAD
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-02-19
Authors: Grzechowiak, M., Ruszkowski, M.
PDB entry 8s3c: Crystal structure of Medicago truncatula glutamate dehydrogenase 2 (unliganded)
Classification: OXIDOREDUCTASE
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-02-19
Authors: Grzechowiak, M., Ruszkowski, M.
PDB entry 8s3d: Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 2-amino-2-hydroxyglutarate (reaction intermediate) and NAD
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-02-19
Authors: Grzechowiak, M., Ruszkowski, M.
PDB entry 8s3e: Structure of rabbit Slo1 in complex with gamma1/LRRC26
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2024-02-20
Authors: Redhardt, M., Raunser, S., Raisch, T.
PDB entry 8s3f: X-ray crystal structure of LsAA9A
Classification: OXIDOREDUCTASE
Source organism: Panus similis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-02-20
Authors: Frandsen, K.E.H., Di Domenico, V., Lo Leggio, L.
PDB entry 8s3g: Atomic structure of truncated worm GdH
Classification: STRUCTURAL PROTEIN
Source organism: Heligmosomoides polygyrus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-02-20
Authors: Mourao, A., Sattler, M., Geerlof, A.
PDB entry 8s3l: X-ray crystal structure of LsAA9A
Classification: OXIDOREDUCTASE
Source organism: Panus similis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-02-20
Authors: Frandsen, K.E.H., Di Domenico, V., Lo Leggio, L.
PDB entry 8s3m: LysTt72, a lytic endopeptidase from Thermus thermophilus MAT72 phage vB_Tt72
Classification: VIRAL PROTEIN
Source organism: Escherichia coli BL21(DE3); Thermus phage Tt72
Experimental method: X-RAY DIFFRACTION
Resolution: 2.198 Å
Deposited: 2024-02-20
Authors: Rypniewski, W., Biniek-Antosiak, K., Bejger, M.
PDB entry 8s3o: Structure of native human CD109
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-02-20
Authors: Almeida, V.A., Andersen, G.R.
PDB entry 8s3r: HUMAN PI3KDELTA IN COMPLEX WITH PYRIDAZINONE INHIBITOR 7
Classification: TRANSFERASE
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-02-20
Authors: Pala, D., Bruno, P., Capelli, A.M., Biagetti, M.
PDB entry 8s3u: LysTt72, a lytic endopeptidase from Thermus thermophilus MAT72 phage vB_Tt72
Classification: VIRAL PROTEIN
Source organism: Escherichia coli BL21(DE3); Thermus phage Tt72
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2024-02-20
Authors: Rypniewski, W., Biniek-Antosiak, K., Bejger, M.
PDB entry 8s3w: LysTt72, a lytic endopeptidase from Thermus thermophilus MAT72 phage vB_Tt72
Classification: VIRAL PROTEIN
Source organism: Escherichia coli BL21(DE3); Thermus phage Tt72
Experimental method: X-RAY DIFFRACTION
Resolution: 2.394 Å
Deposited: 2024-02-20
Authors: Rypniewski, W., Biniek-Antosiak, K., Bejger, M.
PDB entry 8s3x: LIM Domain Kinase 2 (LIMK2) bound to compound 52
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-02-20
Authors: Mathea, S., Chatterjee, D., Preuss, F., Ple, K., Knapp, S.
PDB entry 8s41: The structure of the copia retrotransposon icosahedral capsid (T=9)
Classification: VIRUS LIKE PARTICLE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.7 Å
Deposited: 2024-02-20
Authors: Klumpe, S., Beck, F., Briggs, J.A.G., Beck, M., Plitzko, J.M.
PDB entry 8s42: Ternary structure of 14-3-3s, C-RAF phosphopeptide (pS259) and compound 80 (1124898)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-02-21
Authors: Konstantinidou, M., Vickery, H., Pennings, M.A.M., Virta, J., Visser, E.J., Oetelaar, M.C.M., Overmans, M., Neitz, J., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 8s45: CdaA-E05 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-02-21
Authors: Neumann, P., Ficner, R.
PDB entry 8s46: CdaA-E01 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-02-21
Authors: Neumann, P., Ficner, R.
PDB entry 8s47: CdaA-D07 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-02-21
Authors: Neumann, P., Ficner, R.
PDB entry 8s48: CdaA-C11 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-02-21
Authors: Neumann, P., Ficner, R.
PDB entry 8s49: CdaA-B06 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-02-21
Authors: Neumann, P., Ficner, R.
PDB entry 8s4a: CdaA-B04 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2024-02-21
Authors: Neumann, P., Ficner, R.
PDB entry 8s4b: CdaA-C08 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-02-21
Authors: Neumann, P., Ficner, R.
PDB entry 8s4c: CdaA-H04 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-21
Authors: Neumann, P., Ficner, R.
PDB entry 8s4d: Crystal structure of a peptidergic GPCR in complex with a small synthetic G protein-biased agonist
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli O139:H28 str. E24377A; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.584 Å
Deposited: 2024-02-21
Authors: Verdon, G., Currinn, H., Solcan, N., Schlenker, O., Brown, A.J.H.
PDB entry 8s4e: Dimeric Alpha-beta barrel protein from Brassica rapa subsp.pekinensis
Classification: HYDROLASE
Source organism: Brassica rapa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-02-21
Authors: Pick, L.M., Tang, Q., Ansorge-Schumacher, M., Grogan, G.
PDB entry 8s4f: Human carbonic anhydrase I covalently bound to AV21-08
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2024-02-21
Authors: Manakova, E.N., Grazulis, S., Paketuryte-Latve, V., Vaskevicius, A., Smirnov, A.
PDB entry 8s4h: Crystal structure of scFv-1B6 in complex with rocuronium bromide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-02-21
Authors: Saul, F.A., Haouz, A., Bruhns, P.
PDB entry 8s4j: Structure, substrate selectivity determinants and membrane interactions of a Glutamate-specific TAXI TRAP binding protein from Vibrio cholerae.
Classification: TRANSPORT PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-02-21
Authors: Mulligan, C., Daab, A., Davies, J.
PDB entry 8s4k: Crystal structure of Fab-2B1 in complex with rocuronium
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-02-21
Authors: Saul, F.A., Haouz, A., Bruhns, P.
PDB entry 8s4l: NMR structure of orfamide A in micellar DPC solution
Classification: SURFACTANT PROTEIN
Source organism: Pseudomonas protegens
Experimental method: SOLUTION NMR
Deposited: 2024-02-21
Authors: Kovacs, B., Geudens, N., Martins, J.C.
PDB entry 8s4m: Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125 in complex with an inhibitor
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-02-21
Authors: Snee, M., Kavanagh, M., Levy, C.
PDB entry 8s4n: An i-motif/B-DNA aptamer with high affinity for influenza A virus
Classification: DNA BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-02-21
Authors: Tsvetkov, V., Mir, B., Alieva, R., Arutyunyan, A., Oleynikov, I., Novikov, R., Boravleva, E., Kamzeeva, P., Zatsepin, T., Aralov, A., Gonzalez, C., Zavyalova, E.
PDB entry 8s4p: Crystal structure of an Ene-reductase from Penicillium steckii
Classification: OXIDOREDUCTASE
Source organism: Penicillium steckii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-02-22
Authors: Rozeboom, H.J., Fraaije, M.W.
PDB entry 8s4s: PrgE from plasmid pCF10
Classification: DNA BINDING PROTEIN
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-02-22
Authors: Breidenstein, A., Berntsson, R.P.-A.
PDB entry 8s4t: DNA bound structure of PrgE from plasmid pCF10
Classification: DNA BINDING PROTEIN
Source organism: Enterococcus faecalis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2024-02-22
Authors: Breidenstein, A., Berntsson, R.P.-A.
PDB entry 8s4u: Cryo-EM structure of apo human SLC19A3 in outward-open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-02-22
Authors: Gabriel, F., Loew, C.
PDB entry 8s4v: Tankyrase 2 in complex with a quinazolin-4-one inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-02-22
Authors: Bosetti, C., Lehtio, L.
PDB entry 8s4w: Tankyrase 2 in complex with a quinazolin-4-one inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-02-22
Authors: Bosetti, C., Lehtio, L.
PDB entry 8s4x: Tankyrase 2 in complex with a quinazolin-4-one inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-02-22
Authors: Bosetti, C., Lehtio, L.
PDB entry 8s4y: Crystal structure of an APP-talin (F2F3) chimera
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-02-22
Authors: Ball, N.J., Ellis, C., Goult, B.T.
PDB entry 8s50: Cryo-EM structure of the C terminal region of PTX3 with a section of coiled-coil
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-02-22
Authors: Snee, M., Shah, A., Lockhart-Cairns, M., Collins, R., Levy, C., Baldock, C., Day, A.
PDB entry 8s51: RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-02-22
Authors: Zhan, Y., Grabbe, F., Oberbeckmann, E., Dienemann, C., Cramer, P.
PDB entry 8s52: RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-02-22
Authors: Zhan, Y., Grabbe, F., Oberbeckmann, E., Dienemann, C., Cramer, P.
PDB entry 8s53: X-ray crystal structure of CYP142 from Mycobacterium tuberculosis in complex with a fragment bound in two poses
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-02-22
Authors: Snee, M., Kavanagh, M., Levy, C., Leys, D.
PDB entry 8s54: RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (composite structure)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-22
Authors: Zhan, Y., Grabber, F., Oberbeckmann, E., Dienemann, C., Cramer, P.
PDB entry 8s55: RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (composite structure)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-22
Authors: Zhan, Y., Grabbe, F., Oberbeckmann, E., Dienemann, C., Cramer, P.
PDB entry 8s59: Cryo-EM structure of the active dodecameric Methanosarcina mazei glutamine synthetase.
Classification: CYTOSOLIC PROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2024-02-23
Authors: Kumar, A., Schuller, J.M., Schmitz, R.A.
PDB entry 8s5a: The crystal structure of FAN1 Nuclease bound to 5' phosphorylated p(dG)/3'(dT-dT-dT-dT) double flap DNA
Classification: DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.645 Å
Deposited: 2024-02-23
Authors: Aretz, J., Jeyasankar, G., Salerno-Kochan, A., Thomsen, M., Thieulin-Pardo, G., Haque, T., Monteagudo, E., Felsenfeld, D., Finley, M., Vogt, T.F., Boudet, J., Prasad, B.C.
PDB entry 8s5b: Crystal structure of the sulfoquinovosyl binding protein (SmoF) from A. tumefaciens sulfo-SMO pathway in complex with SQOctyl ligand
Classification: SUGAR BINDING PROTEIN
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-23
Authors: Snow, A.J.D., Sharma, M., Davies, G.J.
PDB entry 8s5c: Cryo-EM structure of Arf1-decorated membrane tubules
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-02-23
Authors: Haupt, C., Semchonok, D.A., Stubbs, M.T., Bacia, K., Desfosses, A., Kastritis, P.L., Hamdi, F.
PDB entry 8s5d: Cryo-EM structure of Arf1-decorated membrane tubules
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2024-02-23
Authors: Haupt, C., Semchonok, D.A., Stubbs, M.T., Bacia, K., Desfosses, A., Kastritis, P.L., Hamdi, F.
PDB entry 8s5e: Cryo-EM structure of Arf1-decorated membrane tubules
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-02-23
Authors: Haupt, C., Semchonok, D.A., Stubbs, M.T., Bacia, K., Desfosses, A., Kastritis, P.L., Hamdi, F.
PDB entry 8s5f: Crystal structure of the HExxH domain of ChlBHExxH a novel alpha-ketoglutarate dependent oxygenase
Classification: OXIDOREDUCTASE
Source organism: Chlorogloeopsis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.797 Å
Deposited: 2024-02-23
Authors: de la Mora, E., Amara, P., Usclat, A., Morishita, Y., Morinaka, B., Nicolet, Y.
PDB entry 8s5g: BceABS nucleotide-free state
Classification: MEMBRANE PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-02-23
Authors: McAndrew, M.B.L., Brotherton, D.H., Crow, A.
PDB entry 8s5h: Full-length human cystathionine beta-synthase with C-terminal 6xHis-tag, basal state, helical reconstruction
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-02-23
Authors: McCorvie, T.J., Yue, W.W.
PDB entry 8s5i: Full-length human cystathionine beta-synthase with C-terminal 6xHis-tag, basal state, single particle reconstruction
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-02-23
Authors: McCorvie, T.J., Bailey, H.J., Yue, W.W.
PDB entry 8s5j: Full-length human cystathionine beta-synthase, basal state, helical reconstruction
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-02-23
Authors: McCorvie, T.J., Yue, W.W.
PDB entry 8s5k: Full-length human cystathionine beta-synthase, basal state, single particle reconstruction
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-02-23
Authors: McCorvie, T.J., Yue, W.W.
PDB entry 8s5l: Full-length human cystathionine beta-synthase, basal state, partially degraded tetramer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-02-23
Authors: McCorvie, T.J., Yue, W.W.
PDB entry 8s5m: Full-length human cystathionine beta-synthase with C-terminal 6xHis-tag, SAM bound, activated state, helical reconstruction
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-02-23
Authors: McCorvie, T.J., Yue, W.W.
PDB entry 8s5n: RNA polymerase II core initially transcribing complex with an ordered RNA of 12 nt
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-24
Authors: Zhan, Y., Grabbe, F., Oberbeckmann, E., Dienemann, C., Cramer, P.
PDB entry 8s5r: Structure of the Chlamydia pneumoniae effector SemD
Classification: ENDOCYTOSIS
Source organism: Chlamydia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-02-25
Authors: Kocher, F., Applegate, V., Reiners, J., Port, A., Spona, D., Haensch, S., Smits, S.H., Hegemann, J., Moelleken, K.
PDB entry 8s5s: Crystal structure of a Sulfite dehydrogenase from Thermus thermophilus
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-02-25
Authors: Djeghader, A., Soulimane, T.
PDB entry 8s5t: Structure of SemD in complex
Classification: ENDOCYTOSIS
Source organism: Chlamydia; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-02-25
Authors: Kocher, F., Applegate, V., Port, A., Reiners, J., Spona, D., Haensch, S., Smits, S.H., Hegemann, J., Moelleken, K.
PDB entry 8s5u: Cryo-EM structure of thiamine-bound human SLC19A3 in outward-open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-02-26
Authors: Gabriel, F., Loew, C.
PDB entry 8s5w: Cryo-EM structure of fedratinib-bound human SLC19A3 in inward-open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-02-26
Authors: Gabriel, F., Loew, C.
PDB entry 8s5x: High pH (8.0) as-isolated MSOX movie series dataset 10 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [3.5 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2024-02-26
Authors: Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.
PDB entry 8s5y: High pH (8.0) as-isolated MSOX movie series dataset 40 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [14 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-02-26
Authors: Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.
PDB entry 8s5z: Cryo-EM structure of hydroxychloroquine-bound human SLC19A3 in inward-open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-02-26
Authors: Gabriel, F., Loew, C.
PDB entry 8s60: Tankyrase 2 in complex with a quinazolin-4-one inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2024-02-26
Authors: Bosetti, C., Paakkonen, J., Lehtio, L.
PDB entry 8s61: Cryo-EM structure of thiamine-bound human SLC19A3 in inward-open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-02-26
Authors: Gabriel, F., Loew, C.
PDB entry 8s62: Cryo-EM structure of amprolium-bound human SLC19A3 in inward-open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2024-02-26
Authors: Gabriel, F., Loew, C.
PDB entry 8s63: Low pH (5.5) as-isolated MSOX movie series dataset 3 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [1.71 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2024-02-26
Authors: Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.
PDB entry 8s64: Low pH (5.5) as-isolated MSOX movie series dataset 10 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [5.7 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-02-26
Authors: Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.
PDB entry 8s65: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) as target for anti Toxoplasma gondii compounds: crystal structure, biochemical characterization and biological evaluation of inhibitors
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION, SOLUTION SCATTERING
Resolution: 2.56 Å
Deposited: 2024-02-26
Authors: Mazzone, F., Hoeppner, A., Reiners, J., Applegate, V., Abdullaziz, M., Gottstein, J., Wesemann, M., Kurz, T., Smits, S.H., Pfeffer, K.
PDB entry 8s67: Galectin-3 with a small molecule inhibitor
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.097 Å
Deposited: 2024-02-26
Authors: Mac Sweeney, A., Sager, C.
PDB entry 8s68: Low pH (5.5) as-isolated MSOX movie series dataset 20 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [11.4 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-02-26
Authors: Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.
PDB entry 8s69: Low pH (5.5) as-isolated MSOX movie series dataset 40 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [22.8 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-02-26
Authors: Rose, S.L., Ferroni, F.M., Horrell, S., Brondino, C.D., Eady, R.R., Jaho, S., Hough, M.A., Owen, A.L., Antonyuk, S.V., Hasnain, S.S.
PDB entry 8s6a: X-ray structure of Dishevelled 3 PDZ domain in a complex with a class III peptide ligand
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-02-26
Authors: Komarek, J., Barinka, C.
PDB entry 8s6b: CryoEM structure of Apo form of catalytic domain of human HMG-CoA reductase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.06 Å
Deposited: 2024-02-27
Authors: Manikandan, K., Van Rooyen, J.
PDB entry 8s6c: Crystal structure of Cyanobacterium TDX16 peroxidase
Classification: OXIDOREDUCTASE
Source organism: cyanobacterium TDX16
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-02-27
Authors: Rozeboom, H.J., Savino, S., Fraaije, M.W.
PDB entry 8s6d: Fumonisin B1 esterase
Classification: HYDROLASE
Source organism: Caulobacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.241 Å
Deposited: 2024-02-27
Authors: Nagy, G.N., Incze, D.J., Bata, Z., Molnar, Z., Leveles, I., Vertessy, B.G., Poppe, L.
PDB entry 8s6e: Monoclonal antibody MenW targeting serogroup W of Neisseria meningitidis
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-02-27
Authors: Pietri, G.P., Bertuzzi, S., Karnicar, K., Unione, L., Lisnic, B., Malic, S., Miklic, K., Novak, M., Calloni, I., Santini, L., Usenik, A., Rosaria Romano, M., Adamo, R., Jonjic, S., Turk, D., Jimenez-Barbero, J., Lenac Rovis, T.
PDB entry 8s6f: A Structural Investigation of the Interaction between a GC-376-Based Peptidomimetic PROTAC and Its Precursor with the Viral Main Protease of Coxsackievirus B3
Classification: VIRAL PROTEIN
Source organism: Coxsackievirus B3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-02-27
Authors: De Santis, A., Grifagni, D., Orsetti, A., Lenci, E., Rosato, A., D'Onofrio, M., Trabocchi, A., Ciofi-Baffoni, S., Cantini, F., Calderone, V.
PDB entry 8s6g: Carbohydrate active oxidoreductase from Alternaria alternata
Classification: OXIDOREDUCTASE
Source organism: Alternaria alternata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2024-02-27
Authors: Banerjee, S., Turella, S., Morth, J.P., Abou Hachem, M.
PDB entry 8s6h: Cryo-EM Structure of the R388 plasmid conjugative pilus reveals a helical polymer characterised by an unusual pilin/phospholipid binary complex
Classification: PROTEIN FIBRIL
Source organism: Escherichia coli HB101
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-02-27
Authors: Vadakkepat, A.K., Waksman, G., Redzej, A.
PDB entry 8s6i: Crystal structure of the human CDKL2 kinase domain with Compound 9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-02-27
Authors: Chen, X., Ni, X., Brooke, L., Bullock, A.N.
PDB entry 8s6j: NavMs in complex with riluzole
Classification: MEMBRANE PROTEIN
Source organism: Magnetococcus marinus MC-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-02-27
Authors: Hollingworth, D., Sula, A., Mykhaylyk, V., Wallace, B.A.
PDB entry 8s6k: Crystal structure of ScFv-G2D11 complexed to a bis-Tn glycopeptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-02-27
Authors: Hurtado-Guerrero, R., Macias-Leon, J.
PDB entry 8s6l: AzeD dehydratase of Pseudomonas aeruginosa
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-02-27
Authors: Calderari, A., Gruez, A., Najah, S., Li, Y., Weissman, K.J.
PDB entry 8s6m: SARS-CoV-2 BQ.1.1 RBD bound to the S2V29 and the S2H97 Fab fragments
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2024-02-28
Authors: Errico, J.M., Park, Y.J., Rietz, T., Czudnochowski, N., Nix, J.C., Cameroni, E., Corti, D., Snell, G., Marco, A.D., Pinto, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 8s6n: Structure of MLLE3 domain of Rrm4 in complex with PAM2L1 of Upa1
Classification: RNA
Source organism: Ustilago maydis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.743 Å
Deposited: 2024-02-28
Authors: Devan, S., Shanmugasundaram, S., Muentjes, K., Smits, S.H., Altegoer, F., Feldbruegge, M.
PDB entry 8s6o: Structure of MLLE3 domain of Rrm4 in complex with PAM2L2 of Upa1
Classification: RNA
Source organism: Ustilago maydis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-02-28
Authors: Devan, S., Shanmugasundaram, S., Muentjes, K., Smits, S.H., Altegoer, F., Feldbruegge, M.
PDB entry 8s6p: Crystal structure of a computationally designed protein bound to a Ru-containing cofactor
Classification: METAL BINDING PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-02-28
Authors: Morris, E.F., Jakob, R.P., Ward, T.R.
PDB entry 8s6q: RosC
Classification: HYDROLASE
Source organism: Streptomyces davaonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-02-28
Authors: Ermler, U., Warkentin, E., Demmer, U., Mack, M.
PDB entry 8s6r: RosC-8.demethyl-8-amino-riboflavin complex
Classification: HYDROLASE
Source organism: Streptomyces davaonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-02-28
Authors: Ermler, U., Warkentin, E., Demmer, U., Mack, M.
PDB entry 8s6s: Oxidoreductase from Phytophthora sojae
Classification: OXIDOREDUCTASE
Source organism: Phytophthora sojae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.789 Å
Deposited: 2024-02-28
Authors: Banerjee, S., Turella, S., Morth, J.P., Abou Hachem, M.
PDB entry 8s6t: Crystal structure of Fab-3F1 complexed to a bis-STn glycopeptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-02-28
Authors: Hurtado-Guerrero, R., Gines, I.
PDB entry 8s6u: Structure of MLLE domain of Pab1 in complex with PAM2 of Upa1
Classification: RNA BINDING PROTEIN
Source organism: Ustilago maydis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-28
Authors: Devan, S., Shanmugasundaram, S., Muentjes, K., Smits, S.H., Altegoer, F., Feldbruegge, M.
PDB entry 8s6v: Crystal structure of Fab-2D9 chimera complexed to a bis-Tn glycopeptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-02-28
Authors: Hurtado-Guerrero, R., Macias-Leon, J., Gonzalez-Ramirez, A.
PDB entry 8s6w: Small circular RNA dimer - Class 3
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2024-02-28
Authors: McRae, E.K., Kristoffersen, E.L., Holliger, P., Andersen, E.S.
PDB entry 8s6y: Co-crystal structure of TEAD1 with OPN-9652
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.031 Å
Deposited: 2024-02-28
Authors: Aplin, A.E.
PDB entry 8s6z: CD28 in complex with the antibody Fab fragment AI3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2024-02-28
Authors: Majocchi, S., Giovanni, M., Malinge, P., Fischer, N., Svensson, L.A., Kelpsas, V., Rose, N.C.
PDB entry 8s70: Cryo-EM structure of Pseudomonas aeruginosa recombinase A (RecA) in complex with ssDNA 72mer and ATPgS
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-02-28
Authors: De Felice, S., Vascon, F., Huber, S.T., Grinzato, A., Jakobi, A.J., Cendron, L.
PDB entry 8s71: Oxidoreductase B from Phytophthora sojae
Classification: OXIDOREDUCTASE
Source organism: Phytophthora sojae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-02-28
Authors: Banerjee, S., Turella, S., Morth, J.P., Abou Hachem, M.
PDB entry 8s72: Crystal structure of neutralizing Fab Eq4.Dp46-3D from equine antivenom bound to a consensus short chain three finger alpha-neurotoxin.
Classification: ANTITOXIN
Source organism: Equus caballus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2024-02-28
Authors: Ayres, F., Wibmer, C.K.
PDB entry 8s73: Crystal structure of Fab-antiCD43 monoclonal antibody complexed to a bis-Tn glycopeptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-02-29
Authors: Hurtado-Guerrero, R., Macias-Leon, J.
PDB entry 8s75: Soluble epoxide hydrolase in complex with PROTAC FL412
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-02-29
Authors: Kumar, A., Schoenfeld, J., Hiesinger, K., Lillich, F., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8s76: Soluble epoxide hydrolase in complex with PROTAC JSF67
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-02-29
Authors: Kumar, A., Schoenfeld, J., Hiesinger, K., Lillich, F., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8s77: Soluble epoxide hydrolase in complex with PROTAC JSF234
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-02-29
Authors: Kumar, A., Schoenfeld, J., Hiesinger, K., Lillich, F., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8s78: MicroED Structure of TLR2 TIR domain-induced MyD88 TIR domain higher-order assembly
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.85 Å
Deposited: 2024-02-29
Authors: Li, Y., Pacoste, L., Xu, H., Kobe, B.
PDB entry 8s79: Lotus japonicus NFR5 intracellular domain in complex with Nanobody 200
Classification: PLANT PROTEIN
Source organism: Lama glama; Lotus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-02-29
Authors: Hansen, S.B., Gysel, K., Andersen, K.R.
PDB entry 8s7a: HSPB8acd-C99S/F155T/A156S
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.951 Å
Deposited: 2024-02-29
Authors: Wang, Z., Benesch, J.
PDB entry 8s7b: Fe(II)-2-oxoglutarate-dependent Oryza sativa dioxygenase His1 in complex with 2-oxoglutarate
Classification: OXYGEN BINDING
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-02-29
Authors: Dhingra, S., Alshref, F., Farcas, I.M., Brewitz, L., Allen, M.D., Schofield, C.J.
PDB entry 8s7c: Ternary Complex of Cachd1, FZD5 and LRP6
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.7 Å
Deposited: 2024-02-29
Authors: Zhao, Y., Ren, J., Jones, E.Y.
PDB entry 8s7d: Cryo-EM structure of SKP1-FBXO22 in complex with a BACH1 BTB dimer at 3.2A resolution
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-02-29
Authors: Khoshouei, M., Goretzki, B.
PDB entry 8s7e: Cryo-EM structure of SKP1-FBXO22
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-29
Authors: Khoshouei, M.
PDB entry 8s7f: Crystal structure of Escherichia coli LpxH in complex with EBL-2805
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-03-01
Authors: Sooriyaarachchi, S., Mowbray, S.L., Bergfors, T., Jones, T.A.
PDB entry 8s7g: Cryo-EM structure of Pseudomonas aeruginosa Recombinase A (RecA) in complex with LexAS125A mutant
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2024-03-01
Authors: De Felice, S., Vascon, F., Huber, S.T., Catalano, C., Jakobi, A.J., Cendron, L.
PDB entry 8s7h: Fructose 6-phosphate aldolase (FSA) from Escherichia coli
Classification: LYASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-03-01
Authors: Hebert, H., Widersten, M.
PDB entry 8s7i: Fructose 6-phosphate aldolase, L107C/A129G/R134V/L163C/S166G mutant
Classification: LYASE
Source organism: Escherichia coli BL21
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-01
Authors: Hebert, H., Widersten, M.