LiteFold/PDB huggingface dataset:
PDB entry 7kjv: Structure of HIV-1 reverse transcriptase initiation complex core
Classification: viral protein/RNA
Source organism: Human immunodeficiency virus 1; Human immunodeficiency virus type 1 group M subtype B (isolate BH10); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-10-26
Authors: Ha, B., Larsen, K.P., Zhang, J., Fu, Z., Montabana, E., Jackson, L.N., Chen, D.H., Puglisi, E.V.
PDB entry 7kjw: Structure of HIV-1 reverse transcriptase initiation complex core with efavirenz
Classification: viral protein/RNA
Source organism: Human immunodeficiency virus 1; Human immunodeficiency virus type 1 group M subtype B (isolate BH10); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-10-26
Authors: Ha, B., Larsen, K.P., Zhang, J., Fu, Z., Montabana, E., Jackson, L.N., Chen, D.H., Puglisi, E.V.
PDB entry 7kjx: Structure of HIV-1 reverse transcriptase initiation complex core with nevirapine
Classification: viral protein/RNA
Source organism: Human immunodeficiency virus 1; Human immunodeficiency virus type 1 group M subtype B (isolate BH10); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-10-26
Authors: Ha, B., Larsen, K.P., Zhang, J., Fu, Z., Montabana, E., Jackson, L.N., Chen, D.H., Puglisi, E.V.
PDB entry 7kjy: Symmetry in Yeast Alcohol Dehydrogenase 1 - Open Form with NADH
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-26
Authors: Subramanian, R., Chang, L., Li, Z., Plapp, B.V., Guntupalli, S.R.
PDB entry 7kjz: crystal structure of PLEKHA7 PH domain biding inositol-tetraphosphate
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2020-10-26
Authors: Marassi, F.M., Aleshin, A.E., Liddington, R.C.
PDB entry 7kk0: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Catechol
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-10-27
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kk1: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84A mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2020-10-27
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7kk2: Structure of the catalytic domain of PARP1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.695 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kk3: Structure of the catalytic domain of PARP1 in complex with talazoparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kk4: Structure of the catalytic domain of PARP1 in complex with olaparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kk5: Structure of the catalytic domain of PARP1 in complex with niraparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kk6: Structure of the catalytic domain of PARP1 in complex with veliparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kk7: crystal structure of ligand-free PLEKHA7 PH domain
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-27
Authors: Marassi, F.M., Aleshin, A.E., Liddington, R.C.
PDB entry 7kk8: Fluoride channel Fluc-Ec2 mutant S81T with bromide
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-10-27
Authors: McIlwain, B.C., Stockbridge, R.B.
PDB entry 7kk9: Fluoride channel Fluc-Ec2 mutant S81A/T82A with bromide
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-10-27
Authors: McIlwain, B.C., Stockbridge, R.B.
PDB entry 7kka: Fluoride channel Fluc-Ec2 mutant S81A with bromide
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-10-27
Authors: McIlwain, B.C., Stockbridge, R.B.
PDB entry 7kkb: Fluoride channel Fluc-Ec2 mutant S81C with bromide
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-10-27
Authors: McIlwain, B.C., Stockbridge, R.B.
PDB entry 7kkc: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to 5-Hydroxyindoleacetic acid
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-10-27
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kkd: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84A mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-27
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7kke: Phosphoinositide 3-Kinase gamma bound to a thiazole inhibitor
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2020-10-27
Authors: Jacobs, M.D., Griffith, J.P.
PDB entry 7kkf: Crystal Structure of S. cerevisiae Ess1
Classification: ISOMERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-27
Authors: Namitz, K.E.W., Alicea-Velazquez, N.L., Cosgrove, M.S., Hanes, S.D.
PDB entry 7kkg: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84D mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2020-10-27
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7kkh: P1A4 Fab in complex with ARS1620
Classification: IMMUNE SYSTEM, ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-27
Authors: Basu, K., Rohweder, P.J., Zhang, Z., Bohn, M.-F., Shokat, K., Craik, C.S.
PDB entry 7kki: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to 2,4-Dichlorophenoxyacetic acid
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-27
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kkj: Structure of anti-SARS-CoV-2 Spike nanobody mNb6
Classification: IMMUNE SYSTEM
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-10-27
Authors: Schoof, M.S., Faust, B.F., Saunders, R.A., Sangwan, S., Rezelj, V., Hoppe, N., Boone, M., Billesboelle, C.B., Puchades, C., Azumaya, C.M., Kratochvil, H.T., Zimanyi, M., Desphande, I., Liang, J., Dickinson, S., Nguyen, H.C., Chio, C.M., Merz, G.E., Thompson, M.C., Diwanji, D., Schaefer, K., Anand, A.A., Dobzinski, N., Zha, B.S., Simoneau, C.R., Leon, K., White, K.M., Chio, U.S., Gupta, M., Jin, M., Li, F., Liu, Y., Zhang, K., Bulkley, D., Sun, M., Smith, A.M., Rizo, A.N., Moss, F., Brilot, A.F., Pourmal, S., Trenker, R., Pospiech, T., Gupta, S., Barsi-Rhyne, B., Belyy, V., Barile-Hill, A.W., Nock, S., Liu, Y., Krogan, N.J., Ralston, C.Y., Swaney, D.L., Garcia-Sastre, A., Ott, M., Vignuzzi, M., Walter, P., Manglik, A., QCRG Structural Biology Consortium
PDB entry 7kkk: SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2020-10-27
Authors: Schoof, M.S., Faust, B.F., Saunders, R.A., Sangwan, S., Rezelj, V., Hoppe, N., Boone, M., Billesboelle, C.B., Puchades, C., Azumaya, C.M., Kratochvil, H.T., Zimanyi, M., Desphande, I., Liang, J., Dickinson, S., Nguyen, H.C., Chio, C.M., Merz, G.E., Thompson, M.C., Diwanji, D., Schaefer, K., Anand, A.A., Dobzinski, N., Zha, B.S., Simoneau, C.R., Leon, K., White, K.M., Chio, U.S., Gupta, M., Jin, M., Li, F., Liu, Y., Zhang, K., Bulkley, D., Sun, M., Smith, A.M., Rizo, A.N., Moss, F., Brilot, A.F., Pourmal, S., Trenker, R., Pospiech, T., Gupta, S., Barsi-Rhyne, B., Belyy, V., Barile-Hill, A.W., Nock, S., Liu, Y., Krogan, N.J., Ralston, C.Y., Swaney, D.L., Garcia-Sastre, A., Ott, M., Vignuzzi, M., Walter, P., Manglik, A., QCRG Structural Biology Consortium
PDB entry 7kkl: SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2020-10-27
Authors: Schoof, M.S., Faust, B.F., Saunders, R.A., Sangwan, S., Rezelj, V., Hoppe, N., Boone, M., Billesboelle, C.B., Puchades, C., Azumaya, C.M., Kratochvil, H.T., Zimanyi, M., Desphande, I., Liang, J., Dickinson, S., Nguyen, H.C., Chio, C.M., Merz, G.E., Thompson, M.C., Diwanji, D., Schaefer, K., Anand, A.A., Dobzinski, N., Zha, B.S., Simoneau, C.R., Leon, K., White, K.M., Chio, U.S., Gupta, M., Jin, M., Li, F., Liu, Y., Zhang, K., Bulkley, D., Sun, M., Smith, A.M., Rizo, A.N., Moss, F., Brilot, A.F., Pourmal, S., Trenker, R., Pospiech, T., Gupta, S., Barsi-Rhyne, B., Belyy, V., Barile-Hill, A.W., Nock, S., Liu, Y., Krogan, N.J., Ralston, C.Y., Swaney, D.L., Garcia-Sastre, A., Ott, M., Vignuzzi, M., Walter, P., Manglik, A., QCRG Structural Biology Consortium
PDB entry 7kkm: Structure of the catalytic domain of tankyrase 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kkn: Structure of the catalytic domain of tankyrase 1 in complex with talazoparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kko: Structure of the catalytic domain of tankyrase 1 in complex with olaparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kkp: Structure of the catalytic domain of tankyrase 1 in complex with niraparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kkq: Structure of the catalytic domain of tankyrase 1 in complex with veliparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2020-10-27
Authors: Gajiwala, K.S., Ryan, K.
PDB entry 7kkr: Fluoride channel Fluc-Ec2 wild-type with bromide
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2020-10-28
Authors: McIlwain, B.C., Stockbridge, R.B.
PDB entry 7kks: Neutron structure of Oxidized Human MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: NEUTRON DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-28
Authors: Azadmanesh, J., Lutz, W.E., Coates, L., Weiss, K.L., Borgstahl, G.E.O.
PDB entry 7kkt: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84D mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2020-10-28
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7kku: X-ray Counterpart to Neutron Structure of Oxidized Human MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2020-10-28
Authors: Azadmanesh, J., Lutz, W.E., Coates, L., Weiss, K.L., Borgstahl, G.E.O.
PDB entry 7kkv: Crystal structure of Bacillus halodurans OapB in complex with its OLE RNA target (native, crystal form I)
Classification: RNA-BINDING PROTEIN/RNA
Source organism: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-28
Authors: Yang, Y., Breaker, R.R.
PDB entry 7kkw: Neutron structure of Reduced Human MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: NEUTRON DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-28
Authors: Azadmanesh, J., Lutz, W.E., Coates, L., Weiss, K.L., Borgstahl, G.E.O.
PDB entry 7kkz: Crystal structure of mouse anti-HIV potent neutralizing antibody M4H2K1
Classification: ANTIVIRAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-10-28
Authors: Kumar, S., Wilson, I.A.
PDB entry 7kl0: Cocrystal structure of human CaMKII-alpha (CAMK2A)kinase domain and GluN2B(S1303D)
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-28
Authors: Ozden, C., Stratton, M.M., Garman, S.C.
PDB entry 7kl1: Cocrystal structure of human CaMKII-alpha (CAMK2A)kinase domain and GluN2B(S1303D)
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-28
Authors: Ozden, C., Stratton, M.M., Garman, S.C.
PDB entry 7kl2: Cocrystal structure of human CaMKII-alpha (CAMK2A)kinase domain and GluN2B(S1303D)
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2020-10-28
Authors: Ozden, C., Stratton, M.M., Garman, S.C.
PDB entry 7kl3: The crystal structure of the 2009/H1N1/California PA endonuclease mutant E119D bound to RNA oligomer AG*CAUC (*uncleaveable bond, -UC disordered)
Classification: VIRAL PROTEIN/RNA
Source organism: Influenza A virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-10-28
Authors: Cuypers, M.G., Kumar, G., White, S.W.
PDB entry 7kl5: Structure of Calmodulin Bound to the Cardiac Ryanodine Receptor (RyR2) at Residues: Phe4246 to Val4271
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-10-29
Authors: Fisher, A.J., Ames, J.B., Yu, Q.
PDB entry 7kl6: Helicobacter pylori Xanthine-Guanine-Hypoxanthine Phosphoribosyltransferase
Classification: TRANSFERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2020-10-29
Authors: Guddat, L.W., Keough, D.T.
PDB entry 7kl7: Helicobacter pylori Xanthine-Guanine-Hypoxanthine Phosphoribosyltransferase
Classification: TRANSFERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2020-10-29
Authors: Guddat, L.W., Keough, D.T.
PDB entry 7kl8: Structure of F420 binding protein Rv1558 from Mycobacterium tuberculosis with F420 bound
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.469 Å
Deposited: 2020-10-29
Authors: Lee, B.M., Tan, L.L., Jackson, C.J.
PDB entry 7kl9: Structure of the SARS-CoV-2 S 6P trimer in complex with the ACE2 protein decoy, CTC-445.2 (State 4)
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2020-10-29
Authors: Barnes, C.O., Bjorkman, P.J.
PDB entry 7klb: X-ray Counterpart to Neutron Structure of Reduced Human MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2020-10-29
Authors: Azadmanesh, J., Lutz, W.E., Coates, L., Weiss, K.L., Borgstahl, G.E.O.
PDB entry 7klc: Crystal structure of M4H2K1 Fab bound to HIV-1 BG505 gp120 core and to 17b Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.3 Å
Deposited: 2020-10-29
Authors: Kumar, S., Wilson, I.A.
PDB entry 7kld: Crystal Structure of an Essential Ribosomal Processing Protease Prp from S. aureus in complex with a covalently linked product Peptide
Classification: HYDROLASE
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-10-29
Authors: Wright, H.T., Peterson, D.
PDB entry 7kle: Ternary structure of Dpo4 bound to N7mG in the template base paired with incoming dCTP
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.003 Å
Deposited: 2020-10-30
Authors: Koag, M.-C., Lee, S.
PDB entry 7klf: Ternary structure of Dpo4 bound to G in the template base paired with incoming dCTP
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2020-10-30
Authors: Koag, M.-C., Lee, S.
PDB entry 7klg: SARS-CoV-2 RBD in complex with Fab 15033
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-10-30
Authors: Li, Z., Rini, J.M.
PDB entry 7klh: SARS-CoV-2 RBD in complex with Fab 15033-7
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2020-10-30
Authors: Li, Z., Rini, J.M.
PDB entry 7kli: Crystal Structure of Enoyl-[acyl-carrier-protein] reductase [NADH] (InhA) from Mycobacterium abscessus
Classification: OXIDOREDUCTASE
Source organism: Mycobacteroides abscessus (strain ATCC 19977 / DSM 44196 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-10-30
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7klj: Crystal structure of the WD-repeat domain of human KIF21A
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2020-10-30
Authors: Zeng, H., Dong, A., Loppnau, P., Hutchinson, A., Seitova, A., Edwards, A.M., Arrowsmith, C.H., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 7klk: Human Arginase1 Complexed with Inhibitor Compound 3a
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2020-10-30
Authors: Palte, R.L.
PDB entry 7kll: Human Arginase1 Complexed with Inhibitor Compound 18
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2020-10-30
Authors: Palte, R.L.
PDB entry 7klm: Human Arginase1 Complexed with Inhibitor Compound 24a
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2020-10-30
Authors: Palte, R.L.
PDB entry 7kln: Myoviridae Phage XM1 Neck Region (12-fold)
Classification: VIRAL PROTEIN
Source organism: Vibrio phage XM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-10-30
Authors: Wang, Z., Klose, T., Jiang, W., Kuhn, R.J.
PDB entry 7klo: Solution structure of the PHD1 domain of histone demethylase KDM5A
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-10-30
Authors: Longbotham, E.J., Kelly, M.J.S., Fujimori, D.G.
PDB entry 7klp: Crystal structure of a three-tetrad, parallel, K+ stabilized human telomeric G-quadruplex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-10-30
Authors: Yatsunyk, L.A., Li, K.S., Chen, E.V.
PDB entry 7klq: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59A mutant with pyruvate bound in the active site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-10-31
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7klr: Solution structure of the PHD1 domain of histone demethylase KDM5A in complex with a histone H3(1-10) peptide
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-10-31
Authors: Longbotham, E.J., Kelly, M.J.S., Fujimori, D.G.
PDB entry 7kls: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59A mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2020-10-31
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7klt: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59N mutant with pyruvate bound in the active site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2020-11-01
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7klu: Tetrameric human mitochondrial Hsp90 (TRAP1) in the presence of AMP-PNP
Classification: CHAPERONE
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-11-01
Authors: Liu, Y.X., Agard, D.A.
PDB entry 7klv: Full-length human mitochondrial Hsp90 (TRAP1) SpyCatcher/SpyTag-SdhB heterodimer in the presence of AMP-PNP
Classification: CHAPERONE
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-11-01
Authors: Liu, Y.X., Agard, D.A.
PDB entry 7klw: Crystal structure of synthetic nanobody (Sb45+Sb68) complexes with SARS-CoV-2 receptor binding domain
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-11-01
Authors: Jiang, J., Ahmad, J., Natarajan, K., Boyd, L.F., Margulies, D.H.
PDB entry 7klx: Protein Tyrosine Phosphatase 1B with inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.839 Å
Deposited: 2020-11-01
Authors: Battaile, K.P., Chirgadze, Y., Ruzanov, M., Romanov, V., Lam, K., Gordon, R., Lin, A., Lam, R., Pai, E., Chirgadze, N.
PDB entry 7kly: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59N mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2020-11-01
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7klz: Structure of SPOP MATH domain in complex with a Geminin peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2020-11-01
Authors: Cui, G., Botuyan, M.V., Mer, G.
PDB entry 7km0: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59A mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-11-02
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7km1: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59N mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2020-11-02
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7km2: Dodecameric Structure of the Chlamydia trachomatis Flavin Prenyltransferase UbiX Ortholog CT220 with FMN
Classification: TRANSFERASE
Source organism: Chlamydia trachomatis (strain D/UW-3/Cx)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2020-11-02
Authors: Nguyen, T., Nicely, N.I., Belaia-Martiniouk, A., Dunne, A.P., McCafferty, D.G.
PDB entry 7km3: Dodecameric Structure of the Chlamydia trachomatis Flavin Prenyltransferase UbiX Ortholog CT220 with FMN and DMAP
Classification: TRANSFERASE
Source organism: Chlamydia trachomatis (strain D/UW-3/Cx)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2020-11-02
Authors: Nguyen, T., Nicely, N.I., Belaia-Martiniouk, A., Dunne, A.P., McCafferty, D.G.
PDB entry 7km4: Crystal Structure of Oxidized Version of Redox-Sensitive Superfolder Green Fluorescent Protein
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2020-11-02
Authors: Nguyen, T., Nicely, N.I., McCafferty, D.G.
PDB entry 7km5: Crystal structure of SARS-CoV-2 RBD complexed with Nanosota-1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2020-11-02
Authors: Ye, G., Shi, K., Aihara, H., Li, F.
PDB entry 7km6: APOBEC3B antibody 5G7 Fv-clasp
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2020-11-02
Authors: Tang, H., Shi, K., Aihara, H.
PDB entry 7km7: Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor SDDC-0001914, tetragonal crystal from
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Mycobacterium ulcerans (strain Agy99)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-02
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7km8: Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor SDDC-0001914, orthorhombic crystal from
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Mycobacterium ulcerans (strain Agy99)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-11-02
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7km9: Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor SDDC-0001913, tetragonal crystal from
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Mycobacterium ulcerans (strain Agy99)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-11-02
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kma: Crystal structure of eif2Balpha with a ligand.
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-11-02
Authors: Nocek, B., Hao, Q., Remarcik, C., Stoll, V., Wong, Y., Sidrauski, C.
PDB entry 7kmb: ACE2-RBD Focused Refinement Using Symmetry Expansion of Applied C3 for Triple ACE2-bound SARS-CoV-2 Trimer Spike at pH 7.4
Classification: Hydrolase/Viral Protein
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2020-11-02
Authors: Gorman, J., Kwong, P.D., Shapiro, L.
PDB entry 7kmc: The internal aldimine crystal structure of the beta-K167T mutant Tryptophan Synthase at 1.50 Angstrom resolution with cesium ion at the metal coordination site
Classification: LYASE
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-11-02
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7kmd: Crystal structure of a HIV-1 clade C isolate Du172.17 HR1.R4.664 Env trimer in complex with human Fabs PGT124 and 35O22
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.39229 Å
Deposited: 2020-11-02
Authors: Kumar, S., Wilson, I.A.
PDB entry 7kme: CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN INHIBITED WITH SEL2711.
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1999-02-26
Authors: Mochalkin, I., Tulinsky, A.
PDB entry 7kmf: Sugar phosphate activation of the stress sensor eIF2B
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2020-11-02
Authors: Nocek, B., Hao, Q., Wong, Y., Stoll, V., Sidrauski, C.
PDB entry 7kmg: LY-CoV555 neutralizing antibody against SARS-CoV-2
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2020-11-02
Authors: Hendle, J., Pustilnik, A., Sauder, J.M., Coleman, K.A., Boyles, J.S., Dickinson, C.D.
PDB entry 7kmh: LY-CoV488 neutralizing antibody against SARS-CoV-2
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2020-11-02
Authors: Hendle, J., Pustilnik, A., Sauder, J.M., Boyles, J.S., Dickinson, C.D., Coleman, K.A.
PDB entry 7kmi: LY-CoV481 neutralizing antibody against SARS-CoV-2
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2020-11-02
Authors: Hendle, J., Pustilnik, A., Sauder, J.M., Coleman, K.A., Boyles, J.S., Dickinson, C.D.
PDB entry 7kmj: Hsa Siglec and Unique domains in complex with Sialyl Lewis C
Classification: CELL ADHESION
Source organism: Streptococcus gordonii str. Challis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2020-11-03
Authors: Stubbs, H.E., Iverson, T.M.
PDB entry 7kmk: cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, two RBDs bound
Classification: Viral protein/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2020-11-03
Authors: Li, Z., Rini, J.M.
PDB entry 7kml: cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, three RBDs bound
Classification: Viral protein/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-11-03
Authors: Li, Z., Rini, J.M.
PDB entry 7kmm: Crystal structure of XAC1771, a novel carbohydrate acetylesterase from Xanthomonas citri
Classification: HYDROLASE
Source organism: Xanthomonas axonopodis pv. citri (strain 306)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.899 Å
Deposited: 2020-11-03
Authors: Vieira, P.S., Murakami, M.T.
PDB entry 7kmn: Crystal structure of XAC1772, a GH35 xyloglucan-active beta-galactosidase from Xanthomonas citri
Classification: HYDROLASE
Source organism: Xanthomonas axonopodis pv. citri (strain 306)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-03
Authors: Vieira, P.S., Murakami, M.T.
PDB entry 7kmo: Crystal structure of the GH35 beta-galactosidase (Xac1772) from Xanthomonas citri in complex with galactose
Classification: HYDROLASE
Source organism: Xanthomonas axonopodis pv. citri (strain 306)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.753 Å
Deposited: 2020-11-03
Authors: Vieira, P.S., Murakami, M.T.
PDB entry 7kmp: Crystal structure of the GH31 alpha-xylosidase (Xac1773) from Xanthomonas citri
Classification: HYDROLASE
Source organism: Xanthomonas axonopodis pv. citri (strain 306)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.556 Å
Deposited: 2020-11-03
Authors: Vieira, P.S., Murakami, M.T.
PDB entry 7kmq: Crystal structure of the GH95 alpha-L-1,2-fucosidase (Xac1774) from Xanthomonas citri
Classification: HYDROLASE
Source organism: Xanthomonas axonopodis pv. citri (strain 306)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.045 Å
Deposited: 2020-11-03
Authors: Vieira, P.S., Murakami, M.T.
PDB entry 7kmr: Crystal structure analysis of human KRAS mutant
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2020-11-03
Authors: Seo, H.-S., Dhe-Paganon, S.
PDB entry 7kms: Cryo-EM structure of triple ACE2-bound SARS-CoV-2 trimer spike at pH 7.4
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2020-11-03
Authors: Gorman, J., Kwong, P.D., Shapiro, L.
PDB entry 7kmt: Structure of the yeast TRAPPIII-Ypt1(Rab1) complex
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2020-11-03
Authors: Joiner, A.M.N., Phillips, B.P., Miller, E.A., Fromme, J.C.
PDB entry 7kmu: Structure of WT Malaysian Banana Lectin
Classification: SUGAR BINDING PROTEIN
Source organism: Musa acuminata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2020-11-03
Authors: Meagher, J.L., Stuckey, J.A.
PDB entry 7kmv: Structure of Malaysian Banana Lectin F84T
Classification: SUGAR BINDING PROTEIN
Source organism: Musa acuminata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-03
Authors: Meagher, J.L., Stuckey, J.A.
PDB entry 7kmw: Crystal structure of IspD from Mycobacterium paratuberculosis
Classification: TRANSFERASE
Source organism: Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-11-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kmx: The capsid of Myoviridae Phage XM1
Classification: VIRUS
Source organism: Vibrio phage XM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-11-03
Authors: Wang, Z., Klose, T., Jiang, W., Kuhn, R.J.
PDB entry 7kmy: Structure of Mtb Lpd bound to 010705
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2020-11-03
Authors: Lima, C.D.
PDB entry 7kmz: Cryo-EM structure of double ACE2-bound SARS-CoV-2 trimer Spike at pH 7.4
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2020-11-03
Authors: Gorman, J., Kwong, P.D., Shapiro, L.
PDB entry 7kn0: Structure of the integrin aIIb(W968V)b3 transmembrane complex
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-11-03
Authors: Situ, A.J., Kim, J., An, W., Kim, C., Ulmer, T.S.
PDB entry 7kn1: Crystal structure of UDP-glucose-4-epimerase (galE) from Stenotrophomonas maltophila with bound NAD and formylated UDP-arabinopyranose
Classification: ISOMERASE
Source organism: Stenotrophomonas maltophilia (strain K279a)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-11-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kn2: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, E88A mutant with pyruvate bound in the active site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2020-11-04
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7kn3: Crystal structure of SARS-CoV-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody S-B8 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.251 Å
Deposited: 2020-11-04
Authors: Liu, H., Zhu, X., Wilson, I.A.
PDB entry 7kn4: Crystal structure of SARS-CoV-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody S-E6 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-11-04
Authors: Liu, H., Wilson, I.A.
PDB entry 7kn5: Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobodies VHH E and U
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2020-11-04
Authors: Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A.
PDB entry 7kn6: Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobody VHH V and antibody Fab CC12.3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2020-11-04
Authors: Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A.
PDB entry 7kn7: Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobody VHH W and antibody Fab CC12.3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2020-11-04
Authors: Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A.
PDB entry 7kn8: Crystal structure of the GH74 xyloglucanase from Xanthomonas campestris (Xcc1752)
Classification: HYDROLASE
Source organism: Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-11-04
Authors: Araujo, E.A., Vieira, P.S., Murakami, M.T., Polikarpov, I.
PDB entry 7kn9: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, E88A mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2020-11-04
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7kna: Localized reconstruction of the H1 A/Michigan/45/2015 ectodomain displayed at the surface of I53_dn5 nanoparticle
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-11-04
Authors: Acton, O.J., Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7knb: Cryo-EM structure of single ACE2-bound SARS-CoV-2 trimer spike at pH 7.4
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2020-11-04
Authors: Gorman, J., Kwong, P.D., Shapiro, L.
PDB entry 7knc: Crystal structure of the GH31 alpha-xylosidase (Xac1773) from Xanthomonas citri
Classification: HYDROLASE
Source organism: Xanthomonas axonopodis pv. citri (strain 306)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.873 Å
Deposited: 2020-11-04
Authors: Vieira, P.S., Murakami, M.T.
PDB entry 7knd: C1B domain of Protein kinase C in apo form
Classification: LIPID BINDING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2020-11-04
Authors: Katti, S.S., Krieger, I.
PDB entry 7kne: Cryo-EM structure of single ACE2-bound SARS-CoV-2 trimer spike at pH 5.5
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2020-11-04
Authors: Gorman, J., Rapp, M., Kwong, P.D., Shapiro, L.
PDB entry 7knf: 1.80A resolution structure of independent Phosphoglycerate mutase from C. elegans in complex with a macrocyclic peptide inhibitor (Ce-1 NHOH)
Classification: ISOMERASE
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-04
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Weidmann, M., Dranchak, P., Aitha, M., Queme, B., Collmus, C.D., Kanter, L., Lamy, L., Tao, D., Rai, G., Suga, H., Inglese, J.
PDB entry 7kng: 2.10A resolution structure of independent Phosphoglycerate mutase from C. elegans in complex with a macrocyclic peptide inhibitor (Ce-2 Y7F)
Classification: ISOMERASE
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-11-04
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Weidmann, M., Dranchak, P., Aitha, M., Queme, B., Collmus, C.D., Kanter, L., Lamy, L., Tao, D., Rai, G., Suga, H., Inglese, J.
PDB entry 7knh: Cryo-EM Structure of Double ACE2-Bound SARS-CoV-2 Trimer Spike at pH 5.5
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2020-11-04
Authors: Gorman, J., Rapp, M., Kwong, P.D., Shapiro, L.
PDB entry 7kni: Cryo-EM structure of Triple ACE2-bound SARS-CoV-2 Trimer Spike at pH 5.5
Classification: VIRAL PROTEIN/Hydrolase
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2020-11-04
Authors: Gorman, J., Rapp, M., Kwong, P.D., Shapiro, L.
PDB entry 7knj: C1B domain of Protein kinase C in complex with Phorbol ester and Phosphatidylcholine
Classification: LIPID BINDING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2020-11-04
Authors: Katti, S.S., Krieger, I.
PDB entry 7knk: STRUCTURE OF HEN EGG-WHITE LYSOZYME grown with Kitchen recipe
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-11-04
Authors: Fox, A.L., Mathews, I.I.
PDB entry 7knl: Artificial Metalloproteins with Dinuclear Iron Centers
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-11-04
Authors: Miller, K.R., Follmer, A.H., Jasniewski, A.J., Sabuncu, S., Biswas, S., Albert, T., Biswas, A., Hendrich, M.P., Moenne-Loccoz, P., Borovik, A.S.
PDB entry 7knn: Solution structure of the alpha-conotoxin analogue [2-8]-alkyne Vc1.1
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2020-11-05
Authors: MacRaild, C.A., Robinson, S.D., Chhabra, S., Norton, R.S.
PDB entry 7kno: Crystal structure of Acetyl-CoA synthetase in complex with adenosine-5'-ethylphosphate from Cryptococcus neoformans var. grubii serotype A (H99)
Classification: LIGASE
Source organism: Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-05
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7knp: Crystal structure of Acetyl-CoA synthetase in complex with adenosine-5'-butylphosphate from Cryptococcus neoformans var. grubii serotype A (H99)
Classification: LIGASE
Source organism: Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-11-05
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7knq: SARM1 Octamer
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-11-05
Authors: Shen, C., Wu, H.
PDB entry 7knr: The crystal structure of the I38T mutant PA endonuclease (2009/H1N1/California) in complex with SJ000988558
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; Influenza A virus (A/Luxembourg/43/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2020-11-05
Authors: Cuypers, M.G., Slavish, P.J., Jayaraman, S., White, S.W.
PDB entry 7kns: Cryo-EM structure of jack bean urease
Classification: HYDROLASE
Source organism: Canavalia ensiformis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2020-11-05
Authors: Feathers, J.R., Spoth, K.A., Fromme, J.C.
PDB entry 7knt: CryoEM structure of the apo-CGRP receptor in a detergent micelle
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2020-11-06
Authors: Belousoff, M.J., Danev, R.
PDB entry 7knu: CryoEM structure of the CGRP receptor with bound CGRP peptide in a detergent micelle
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2020-11-06
Authors: Belousoff, M.J., Danev, R.
PDB entry 7knv: Solution NMR structure of CDHR3 extracellular domain EC1
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-11-06
Authors: Lee, W., Tonelli, M., Frederick, R.O., Watters, K.E., Markley, J.L., Palmenberg, A.C.
PDB entry 7knw: Crystal structure of SND1 in complex with C-26-A2
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2020-11-06
Authors: Kang, Y.
PDB entry 7knx: Crystal structure of SND1 in complex with C-26-A6
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-11-06
Authors: Kang, Y.
PDB entry 7kny: The crystal structure of the I38T mutant PA endonuclease (2009/H1N1/California) in complex with SJ000988528
Classification: VIRAL PROTEIN, Hydrolase
Source organism: Influenza A virus; Influenza A virus (A/Luxembourg/43/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2020-11-06
Authors: Cuypers, M.G., Slavish, P.J., Jayaraman, S., White, S.W.
PDB entry 7knz: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, E88A mutant with pyruvate bound in the active site and R,R-bislysine at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2020-11-06
Authors: Saran, S., Sanders, D.A.R.