LiteFold/PDB huggingface dataset:
PDB entry 9y1w: Crystal structure of NRas-G12D in complex with GDP and compound 27
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-08-31
Authors: Johnson, T.A., Cross, J.B.
PDB entry 9y1x: Crystal structure of NRas-G12D in complex with GDP and IACS-56676
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2025-08-31
Authors: Johnson, T.A., Cross, J.B.
PDB entry 9y1y: Crystal structure of NRas-G12D in complex with GDP and compound 7
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-08-31
Authors: Johnson, T.A., Cross, J.B.
PDB entry 9y1z: Crystal structure of NRas-G12D in complex with GDP and compound 5
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-08-31
Authors: Johnson, T.A., Cross, J.B.
PDB entry 9y28: Rubredoxin from Pyrococcus Furiosus at 260K, Alanine-2 N terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2025-08-31
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y29: Rubredoxin from Pyrococcus Furiosus at 280K, Alanine-2 N terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2025-08-31
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y2a: Cryo-EM structure of the human TRPM4 channel in complex with calcium and DAB at 37 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-08-31
Authors: Jinhong, H., Wei, L., Juan, D.
PDB entry 9y2b: Cryo-EM structure of the human TRPM4 channel in complex with EGTA and DAB at 37 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-08-31
Authors: Jinhong, H., Wei, L., Juan, D.
PDB entry 9y2c: Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium and DAB at 37 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-08-31
Authors: Jinhong, H., Wei, L., Juan, D.
PDB entry 9y2e: Rubredoxin from Pyrococcus Furiosus at 100K, formyl-Methionine N-terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.78 Å
Deposited: 2025-09-01
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y2g: Rubredoxin from Pyrococcus Furiosus at 293K, formyl-Methionine N-terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2025-09-01
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y2y: Rubredoxin from Pyrococcus Furiosus at 393K, formyl-Methionine N-terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-09-01
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y2z: Icosahedral symmetric structure of an expansion intermediate of Turnip Crinkle Virus (Asymmetric Trimer Unit)
Classification: VIRUS
Source organism: Turnip crinkle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-09-01
Authors: Venkatakrishnan, V., Braet, S., Ramesh, R., Clawson, M.A., Laremore, T.N., Wong, S.M., Anand, G.S.
PDB entry 9y30: Rubredoxin from Pyrococcus Furiosus at 383K, formyl-Methionine N-terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2025-09-01
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y31: Symmetry relaxed asymmetric structure of an expansion intermediate of Turnip crinkle virus
Classification: VIRAL PROTEIN
Source organism: Turnip crinkle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2025-09-01
Authors: Venkatakrishnan, V., Braet, S., Ramesh, R., Clawson, M.A., Laremore, T.N., Wong, S.M., Anand, G.S.
PDB entry 9y32: Rubredoxin from Pyrococcus Furiosus at 373K, formyl-Methionine N-terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.472 Å
Deposited: 2025-09-01
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y33: Rubredoxin from Pyrococcus Furiosus at 363K, formyl-Methionine N-terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-09-01
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y37: Rubredoxin from Pyrococcus Furiosus at 353K, formyl-Methionine N-terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-09-01
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y38: Rubredoxin from Pyrococcus Furiosus at 313K, formyl-Methionine N-terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-09-01
Authors: Doukov, T., Cramer, S.P.J., George, D., Jenney, F.E.
PDB entry 9y3b: [21-7B-001] 21 bp tensegrity triangle that propagates via blunt-end stacking on two sides and via sticky-end cohesion on one side
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.13 Å
Deposited: 2025-09-02
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9y3c: [21-7B nWC] 21 bp tensegrity triangle with one set of Watson-Crick sticky ends, one of non-Watson-Crick sticky ends, and one of blunt ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.43 Å
Deposited: 2025-09-02
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9y3w: Crystal structure of NRas-G12D in complex with GDP and compound 13
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-09-02
Authors: Johnson, T.A., Cross, J.B.
PDB entry 9y42: Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)
Classification: RIBOSOME
Source organism: Heterocephalus glaber
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2025-09-02
Authors: Gutierrez-Vargas, C., De, S., Maji, S., Liu, Z., Nieb, M., Seluanov, A., Gorbunova, V., Frank, J.
PDB entry 9y43: 3-hydroxypropionyl-CoA Synthetase (ADP-forming) from Nitrosopumilus maritimus.
Classification: LIGASE
Source organism: Nitrosopumilus maritimus SCM1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-09-02
Authors: Johnson, J.A., Yilmaz, M., Tosun, B., Wakatsuki, S., Demirci, H.
PDB entry 9y44: Structure of naked mole-rat ribosome (rotated, tRNAs, and mRNA)
Classification: RIBOSOME
Source organism: Heterocephalus glaber
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2025-09-02
Authors: Gutierrez-Vargas, C., De, S., Maji, S., Liu, Z., Nieb, M., Seluanov, A., Gorbunova, V., Frank, J.
PDB entry 9y45: His-tagged beta galactosidase (LacZ) on a Ni-NTA lipid monolayer grid
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2025-09-02
Authors: Baker, R.W., Strauss, J.D.
PDB entry 9y46: Human nucleosome structure on Nickel-NTA lipid affinity grid (C2 refinement)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-09-02
Authors: Baker, R.W., Strauss, J.D., McGinty, R.K., Skrajna, A.
PDB entry 9y47: Human nucleosome structure on Nickel-NTA lipid affinity grid (C1 refinement)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-09-02
Authors: Baker, R.W., Strauss, J.D., McGinty, R.K., Skrajna, A.
PDB entry 9y48: Sro7 bound to His-Exo84 (1-326) on a Nickel-NTA lipid monolayer
Classification: EXOCYTOSIS
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-09-02
Authors: Baker, R.W., Strauss, J.D.
PDB entry 9y49: Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
Classification: RIBOSOME
Source organism: Ctenomyidae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-09-02
Authors: Gutierrez-Vargas, C., De, S., Maji, S., Liu, Z., Nieb, M., Seluanov, A., Gorbunova, V., Frank, J.
PDB entry 9y4a: His-tagged Glutamine Synthetase on a Ni-NTA lipid monolayer grid
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-09-02
Authors: Baker, R.W., Strauss, J.D.
PDB entry 9y4c: Strand displacement state I of Human mitochondrial DNA polymerase gamma ternary complex
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-09-03
Authors: Park, J., Yin, Y.W.
PDB entry 9y4d: Strand displacement state II of Human mitochondrial DNA polymerase gamma ternary complex
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-09-03
Authors: Park, J., Yin, Y.W.
PDB entry 9y4e: Strand displacement state III of Human mitochondrial DNA polymerase gamma ternary complex
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-09-03
Authors: Park, J., Yin, Y.W.
PDB entry 9y4f: Strand displacement state IV of Human mitochondrial DNA polymerase gamma ternary complex
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-09-03
Authors: Park, J., Yin, Y.W.
PDB entry 9y4g: Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
Classification: RIBOSOME
Source organism: Ctenomyidae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-09-03
Authors: Gutierrez-Vargas, C., De, S., Maji, S., Liu, Z., Nieb, M., Seluanov, A., Gorbunova, V., Frank, J.
PDB entry 9y4h: Structure of guinea pig ribosome with P/E-tRNA and mRNA
Classification: RIBOSOME
Source organism: Cavia porcellus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2025-09-03
Authors: Gutierrez-Vargas, C., De, S., Maji, S., Liu, Z., Nieb, M., Seluanov, A., Gorbunova, V., Frank, J.
PDB entry 9y4p: Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2025-09-03
Authors: Xie, X., Zhou, X.E., Worden, E.J., Jones, P.A.
PDB entry 9y4q: Crystal structure of the human DCAF1 WDR domain in complex with OICR-40102
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-09-03
Authors: kimani, S., Dong, A., Li, Y., Seitova, A., Mamai, A., Al-awar, R., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9y4s: Crystal structure of DNA integrity scanning protein (DisA) from Mycobacterium tuberculosis in complex with cyclic di-AMP
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2025-09-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9y4u: Crystal structure of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Neisseria gonorrhoeae in complex with NAD (Orthorhombic I form)
Classification: OXIDOREDUCTASE
Source organism: Neisseria gonorrhoeae NCCP11945
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-09-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9y4v: Crystal structure of a GH5_18 from Microbacterium oxydans DSM 20578
Classification: HYDROLASE
Source organism: Microbacterium oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-09-03
Authors: Higgins, M.A.
PDB entry 9y51: PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1563512128
Classification: HYDROLASE
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-09-04
Authors: Godoy, A.S., Mesquita, N., Oliva, G.
PDB entry 9y52: One CAP-1 Bound to the Pointed End of Cofilin F-actin
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-09-04
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9y55: A crystal structure of DUSP10 loop mutant I445A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.502 Å
Deposited: 2025-09-04
Authors: Manjula, R., Lolis, E.J., Bennett, A.
PDB entry 9y59: Crystal structure of CSD20f3B, a designed switching binder to CSD20f3A
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.87 Å
Deposited: 2025-09-04
Authors: Bera, A.K., Broerman, A., Kang, A., Nguyen, H., Baker, D.
PDB entry 9y5q: Cryo EM structure of KCa3.1_R355K_I/calmodulin channel in complex with rimtuzalcap
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.73 Å
Deposited: 2025-09-05
Authors: Nam, Y.W., Zhang, M.
PDB entry 9y5x: Crystal structure of shorter construct of SHP2 unbound N-SH2 domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-09-05
Authors: Padua, R.A.P., Sullivan, C., Glaser, A., Ojoawo, A., Kern, D.
PDB entry 9y5y: Structure of the Omicron Spike RBD bound by the monobody s19382 (local refinement from dimerized Spike protein ECDs)
Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-09-05
Authors: Noland, C.L., Perez, C.P., Huang, P.
PDB entry 9y65: Plasmodium falciparum M1 aminopeptidase (PfA-M1) bound to inhibitor 3k (MIPS3415)
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-09-08
Authors: Mansouri, M., McGowan, S., Webb, C.T.
PDB entry 9y66: attLsym bound serine integrase complex in the dimeric state
Classification: RECOMBINATION
Source organism: Spbetavirus SPbeta; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-09-08
Authors: Shin, H., Pigli, Y., Pena Reyes, T., Fuller, J.R., Olorunniji, F.J., Rice, P.A.
PDB entry 9y6b: CRYSTAL STRUCTURE OF A149T VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR ESSEX IN COMPLEX WITH PLP-GLYCINE
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-09-08
Authors: Beamer, L.J., Samarakoon, V., Owuocha, L.F.
PDB entry 9y6c: X-ray structure analysis of human Complement Component 5 TE domain in complex with the peptide Ra30303
Classification: IMMUNE SYSTEM
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-09-08
Authors: Ye, P., Hammer, R.P., Wang, Z., Dhamnaskar, K., Hoarty, M., Ma, Z., Tang, G., DeMarco, S.J., Ricardo, A.
PDB entry 9y6d: CRYSTAL STRUCTURE OF THE A149T VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR FORREST IN COMPLEX WITH PLP-GLYCINE
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-09-08
Authors: Beamer, L.J., Samarakoon, V., Owuocha, L.F.
PDB entry 9y6i: Avermitilol synthase: Complex with Mg, inorganic pyrophosphate, and benzyltriethyl ammonium cation
Classification: LYASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2025-09-08
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9y6j: Avermitilol synthase: Complex with Mg, inorganic pyrophosphate, and bicyclic tetralin-based tertiary amine
Classification: LYASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-09-08
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9y6k: Avermitilol synthase T215V: Complex with Mg, inorganic pyrophosphate, and benzyltriethyl ammonium cation
Classification: LYASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-09-08
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9y6l: Avermitilol synthase A177S: Complex with Mg, inorganic pyrophosphate, and benzyltriethyl ammonium cation
Classification: LYASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2025-09-08
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9y6m: Avermitilol synthase: Complex with Mg, inorganic pyrophosphate, and adamantane cation
Classification: LYASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-09-08
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9y6s: 96-nm repeat of the Leishmania tarentolae doublet microtubule
Classification: STRUCTURAL PROTEIN
Source organism: Leishmania mexicana; Leishmania tarentolae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-09-09
Authors: Doran, M.H., Brown, A.
PDB entry 9y6t: Structure of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT in a hexamer state
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-09-09
Authors: Hsu, H.C., Li, H.
PDB entry 9y6u: Cryo-EM Structure of Gp77 within the In Vitro Reconstituted RAZR:GP77 Complex
Classification: RNA BINDING PROTEIN
Source organism: Escherichia phage SECphi27
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-09-09
Authors: Yifei, L., Zhang, T., Laub, M., Ghanbarpour, A.
PDB entry 9y6v: attPsym bound large serine integrase and RDF complex in the dimeric state
Classification: RECOMBINATION
Source organism: Spbetavirus SPbeta; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2025-09-09
Authors: Shin, H., Olorunniji, F.J., Rice, P.A.
PDB entry 9y72: Structure of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT in a two-hexamer state
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2025-09-09
Authors: Hsu, H.C., Li, H.
PDB entry 9y74: [22L-7B C|A] 22 bp L-DNA tensegrity triangle that propagates via blunt-end stacking with C stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 8.76 Å
Deposited: 2025-09-09
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9y76: Crystal structure of the human DCAF1 WDR domain in complex with OICR-40120
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-09-09
Authors: kimani, S., Dong, A., Li, Y., Seitova, A., Mamai, A., Al-awar, R., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9y7d: Cereblon with Golcadomide and Ikaros ZF1-2-3
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-09-09
Authors: Watson, E.R., Lander, G.C.
PDB entry 9y7g: CRYSTAL STRUCTURE OF THE A149T VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR FORREST IN COMPLEX WITH PLP
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-09-10
Authors: Beamer, L.J., Samarakoon, V., Owuocha, L.F.
PDB entry 9y7h: Gb1g2 crosslinked to PLCb3
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-09-10
Authors: Fisher, I.J., Lyon, A.M.
PDB entry 9y7j: HIV-1 CA hexamer from purified viral cores bound to lenacapavir, C6 symmetry
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-09-10
Authors: Barros dos Santos, N.F., Ganser-Pornillos, B.K., Pornillos, O.
PDB entry 9y7k: Importin a2 in complex with Guertu virus non-structural S (NSs) NLS peptide
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-09-10
Authors: Hawker, J.E., Forwood, J.K.
PDB entry 9y7p: Homomeric Glycine Receptor alpha2 with 1 mM Glycine in a Desensitized State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-09-11
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y7v: Structure of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT bound to coenzyme A in a hexamer state
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-09-11
Authors: Hsu, H.C., Li, H.
PDB entry 9y7w: Homomeric Glycine Receptor alpha2 with 1 mM Glycine in an Open State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-09-11
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y7x: Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in an Open State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2025-09-11
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y7z: Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in a Desensitized State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-09-11
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y80: Homomeric Glycine Receptor alpha2 with PTX in a Desensitized State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2025-09-11
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y81: Crystal structure of Glutamate-tRNA synthetase GluRS from Chlamydia pneumoniae
Classification: LIGASE
Source organism: Chlamydia pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-09-11
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9y83: Crystal structure of Ornithine carbamoyltransferase from Burkholderia xenovorans
Classification: TRANSFERASE
Source organism: Paraburkholderia xenovorans LB400
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2025-09-11
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9y8b: Human p38 ALPHA MAPK:MW164 pyridazine inhibitor complex
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-09-11
Authors: Brunzelle, J.S., Shuvalova, L., Roy, S.M., Watterson, D.M.
PDB entry 9y8h: Crystal structure of Ornithine carbamoyltransferase from Burkholderia xenovorans in complex with phosphono carbamate
Classification: TRANSFERASE
Source organism: Paraburkholderia xenovorans LB400
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2025-09-11
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9y8j: Crystal structure of the Kelch domain of human KLHL12 with compound 1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8k: Crystal structure of the Kelch domain of human KLHL12 with compound 7k
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8l: Crystal structure of the Kelch domain of human KLHL12 with compound 8e
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8m: Crystal structure of the Kelch domain of human KLHL12 with compound 8i
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.334 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8n: Crystal structure of the Kelch domain of human KLHL12 with compound 8m
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.308 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8o: Crystal structure of the Kelch domain of human KLHL12 with compound 9c
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.286 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8p: Cryo-EM structure of Thermotoga maritima encapsulin shell
Classification: VIRUS LIKE PARTICLE
Source organism: Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-09-11
Authors: Torres, V.J., Vera, C.S., Cisneros, Y.W., Portugal, R.V., Guerra, D.G., Evangelista, W.
PDB entry 9y8q: Crystal structure of the Kelch domain of human KLHL12 with compound 9e
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8r: Crystal structure of the Kelch domain of human KLHL12 with compound 9h
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.334 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8s: Crystal structure of the Kelch domain of human KLHL12 with compound 9k
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.286 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8t: Crystal structure of the Kelch domain of human KLHL12 with compound 10b
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8u: Crystal structure of the Kelch domain of human KLHL12 with compound 10j
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8v: Crystal structure of the Kelch domain of human KLHL12 with compound 10q
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.271 Å
Deposited: 2025-09-11
Authors: Amporndanai, K., Madrigal-Carrillo, E.A., Rietz, T.A., Zhao, B., Fesik, S.W.
PDB entry 9y8w: MERS Mpro with EGT710
Classification: HYDROLASE
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2025-09-11
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9y8x: OC43 Mpro with EGT710
Classification: HYDROLASE
Source organism: Human coronavirus OC43
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2025-09-11
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9y8z: Homomeric Glycine Receptor alpha2 with 0.1 mM Glycine in an Apo State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-09-11
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y93: Tetrameric InvE from Salmonella Typhimurium
Classification: PROTEIN TRANSPORT
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2025-09-13
Authors: Zhu, L.Y., Wang, T.T., Guo, E.Z., Lara-Tejero, M., Galan, J.E.
PDB entry 9y94: Homomeric Glycine Receptor alpha2 with PTX in an Open State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-09-13
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y95: Homomeric Glycine Receptor alpha2 with PTX in an Apo State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-09-13
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y96: Homomeric Glycine Receptor alpha2 with 1 mM Glycine in a Closed State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-09-13
Authors: Klemm, E., Gibbs, E., Chakrapani, S.
PDB entry 9y9b: PLK4 in complex with Compound 6 (3-hydroxy-N-(3-(pyridin-2-yl)-1H-pyrazol-4-yl)-8-azabicyclo[3.2.1]octane-8-carboxamide)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-09-13
Authors: Murray, J.M.
PDB entry 9y9c: Cryo-EM map of the in vitro reconstituted RAZR:GP77 complex with AlphaFold-predicted models fitted into the density.
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli; Escherichia phage SECphi27
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-09-14
Authors: Lyu, Y., Zhang, T., Laub, M., Ghanbarpour, A.
PDB entry 9y9j: Two CAP-1 Bound to the Pointed End of Cofilin F-actin
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2025-09-14
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9y9l: CP at the barbed end with one cofilin on second-to-last subunit
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-09-14
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9y9m: Capping protein bound to the barbed end of cofilactin
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-09-14
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9y9n: PLK4 in complex with Compound 25 ((R)-7-hydroxy-N-(3-(1-(2,2,2-trifluoroethyl)-1H-pyrazolo[4,3-c]pyridin-6-yl)-1H-pyrazol-4-yl)-7-(trifluoromethyl)-4-azaspiro[2.5]octane-4-carboxamide)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-09-14
Authors: Murray, J.M., Yang, K.S.
PDB entry 9y9p: Cofilactin filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.06 Å
Deposited: 2025-09-14
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9y9w: Vibrio cholerae protein FrhA peptid-binding domain and adjacent split domain (S1127-F1439) in complex with peptide AGWTD X-ray crystallography structure
Classification: METAL BINDING PROTEIN
Source organism: Vibrio cholerae O395; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-09-15
Authors: Wang, M., Guo, S., Kinrade, B., Davies, P.
PDB entry 9y9y: Crystal structure of DNA integrity scanning protein DisA from Mycobacterium tuberculosis in complex with cyclic di-AMP and bromide
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 3.03 Å
Deposited: 2025-09-15
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9y9z: Cryo-EM structure of conoid fiber from Toxoplasma gondii (24-nm repeat)
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-09-15
Authors: Zeng, J., Zhang, R.
PDB entry 9ya0: Cryo-EM structure of pre-conoid ring 2 (PCR P2 ring)from Toxoplasma gondii
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2025-09-15
Authors: Zeng, J., Zhang, R.
PDB entry 9ya1: Cryo-EM structure of intraconoidal microtubule 2 (ICMT2) from Toxoplasma gondii (8-nm repeat)
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-09-15
Authors: Zeng, J., Zhang, R.
PDB entry 9ya2: Cryo-EM structure of intraconoidal microtubule 1 (ICMT1) from Toxoplasma gondii (8-nm repeat)
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-09-15
Authors: Zeng, J., Zhang, R.
PDB entry 9ya3: Cryo-EM structure of the apical region of subpellicular microtubule (SPMT) from Toxoplasma gondii (8-nm repeat)
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-09-15
Authors: Zeng, J., Zhang, R.
PDB entry 9ya5: KIF1A R350G bound to microtubules in two-heads-bound state with AMP-PNP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-09-15
Authors: Shatarupa, A., Rao, L., Asenjo, A.B., Gennerich, A., Sosa, H.
PDB entry 9ya7: KIF1A R350G bound to microtubules in the apo state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-09-15
Authors: Shatarupa, A., Rao, L., Asenjo, A.B., Gennerich, A., Sosa, H.
PDB entry 9ya9: Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-09-15
Authors: Zhu, J., Fang, W., Pagarigan, B.
PDB entry 9yaa: Crystal structure of a SnoaL-like domain-containing protein from Mycobacterium ulcerans (Orthorhombic C form)
Classification: ISOMERASE
Source organism: Mycobacterium ulcerans Agy99
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2025-09-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yab: KIF1A R350W bound to microtubules in the apo state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-09-15
Authors: Shatarupa, A., Rao, L., Asenjo, A.B., Gennerich, A., Sosa, H.
PDB entry 9yah: Crystal structure of metallochaperone AccA from Neisseria gonorrhoeae
Classification: METAL BINDING PROTEIN
Source organism: Neisseria meningitidis serogroup A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-09-15
Authors: Jobichen, C., Kobe, B., Dalton, H.Y.N., Denis, T., Karrera, D.
PDB entry 9yai: KIF1A R350W bound to microtubules in two-heads-bound state with AMP-PNP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-09-16
Authors: Shatarupa, A., Rao, L., Asenjo, A.B., Gennerich, A., Sosa, H.
PDB entry 9yao: Gbg crosslinked to PLCb3 - second conformation
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2025-09-16
Authors: Fisher, I.J., Lyon, A.M.
PDB entry 9yap: Gbg crosslinked to PLCb3 - second conformation
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2025-09-16
Authors: Fisher, I.J., Lyon, A.M.
PDB entry 9yb5: Cryo-EM structure of human importin Beta:Ran-GDP:RanBP1 complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-09-16
Authors: Ko, Y., Cingolani, G.
PDB entry 9yb6: Human Mitochondrial Aspartate Aminotransferase complex with PLP at 1.5 Angstrom.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-09-16
Authors: Krinkel, B.A., Yosaatmadja, Y., Squire, C.J., Loomes, K.M.
PDB entry 9ybi: Structure of the CBS pair domain from zebrafish magnesium transporter CNNM2
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-09-17
Authors: Kozlov, G., Mahbub, L., Jin, M., Gehring, K.
PDB entry 9ybj: [2UDS] Double crossover-like DNA motif containing a mobile junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-09-17
Authors: Horvath, A., Singh, V.R., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9ybk: [2ULA] Double crossover-like L-DNA motif containing a mobile junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2025-09-17
Authors: Horvath, A., Singh, V.R., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9ybm: 2.62A cryo-EM structure of RNA-directed RNA polymerase L of Crimean-Congo hemorrhagic fever virus (Apo state)
Classification: TRANSFERASE
Source organism: Crimean-Congo hemorrhagic fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-09-17
Authors: Liu, B., Wang, D., Yang, G.
PDB entry 9ybn: 2.53A cryo-EM structure of RNA-directed RNA polymerase L of Crimean-Congo hemorrhagic fever virus (RNA bound)
Classification: TRANSFERASE/RNA
Source organism: Crimean-Congo hemorrhagic fever virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-09-17
Authors: Liu, B., Wang, D., Yang, G.
PDB entry 9ybq: Vibrio cholerae protein FrhA peptid-binding domain and adjacent split domain (S1127-F1439) in complex with peptide AGYTD X-ray crystallography structure
Classification: METAL BINDING PROTEIN
Source organism: Vibrio cholerae O395; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-09-17
Authors: Wang, M., Guo, S., Kinrade, B., Davies, P.
PDB entry 9ybz: CRYSTAL STRUCTURE OF THE A149T VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR ESSEX IN COMPLEX WITH PLP
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-09-17
Authors: Beamer, L.J., Samarakoon, V., Owuocha, L.F.
PDB entry 9yc0: Plasmodium falciparum M17 aminopeptidase (PfA-M17) bound to inhibitor 3ab (MIPS3413)
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-09-17
Authors: Mansouri, M., McGowan, S., Webb, C.T.
PDB entry 9yc2: Crystal structure of USP49 ZnF-UBP domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-09-18
Authors: Alexandrovics, J.A., Komander, D.
PDB entry 9yc3: Crystal structure of malaria transmission-blocking antigen PfHAP2 domain 3 in complex with nanobody WNb 334
Classification: PROTEIN BINDING
Source organism: Plasmodium falciparum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-09-18
Authors: Lyons, F.M.T., Pymm, P., Dietrich, M.H., Tham, W.H.
PDB entry 9yc5: Human uPAR bound to the Fab fragment of targeted cancer therapeutic antibody FL1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-09-18
Authors: Anane, R.F., Whisstock, J.C., Engelholm, L.H., Law, R.H.P., Ploug, M.
PDB entry 9yc6: Mutant human uPAR bound to the Fab fragment of the targeted cancer therapeutic antibody FL1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2025-09-18
Authors: Anane, R.F., Whisstock, J.C., Engelholm, L.H., Law, R.H.P., Ploug, M.
PDB entry 9yc7: Plasmodium falciparum M17 aminopeptidase (PfA-M17) bound to inhibitor 3k (MIPS3415)
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-09-18
Authors: Mansouri, M., McGowan, S., Webb, C.T.
PDB entry 9yc9: HSV replication fork complex bound to pritelivir
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain R-15
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-09-18
Authors: Yu, Z., Abraham, J.
PDB entry 9yce: Active site of MtgB, a glycine betaine methyltransferase from the MttB superfamily
Classification: TRANSFERASE
Source organism: Desulfitobacterium hafniense Y51
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-09-18
Authors: Picking, J., Li, Y., Ticak, T., Ferguson, D.J., Hao, B., Krzycki, J.A.
PDB entry 9yck: Cryo-EM structure of MERS-CoV nsp10-nsp14 (E191A) in complex with T20P15 RNA, monomeric form
Classification: Viral Protein/RNA
Source organism: Middle East respiratory syndrome-related coronavirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-09-19
Authors: Yang, Y., Liu, C.
PDB entry 9ycl: Cryo-EM structure of MERS-CoV nsp10-nsp14 (E191A) in complex with T20P15 RNA, dimeric form
Classification: Viral Protein/RNA
Source organism: Middle East respiratory syndrome-related coronavirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-09-19
Authors: Yang, Y., Liu, C.
PDB entry 9ycm: Cryo-EM structure of MERS-CoV nsp10-nsp14 (E191A) in complex with T20P14-U RNA
Classification: Viral Protein/RNA
Source organism: Middle East respiratory syndrome-related coronavirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-09-19
Authors: Yang, Y., Liu, C.
PDB entry 9ycn: Cryo-EM structure of MERS-CoV nsp10-nsp14 (E191A) in complex with T20P14-A RNA
Classification: RNA/VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-09-19
Authors: Yang, Y., Liu, C.
PDB entry 9yco: Cryo-EM structure of MERS-CoV nsp10-nsp14 (E191A) in complex with T20P14-G RNA
Classification: VIRAL PROTEIN/RNA
Source organism: Middle East respiratory syndrome-related coronavirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-09-19
Authors: Yang, Y., Liu, C.
PDB entry 9ycp: HSV Helicase-primase complex bound to IM-250
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain R-15
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-09-19
Authors: Yu, Z., Abarham, J.
PDB entry 9yct: HSV helicase-primase complex bound to pritelivir
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain R-15
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-09-19
Authors: Yu, Z., Abraham, J.
PDB entry 9ycu: Protiated human DJ-1, 100K
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2025-09-19
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9ycv: HSV Helicase-primase complex bound to amenamevir
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain R-15
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-09-19
Authors: Yu, Z., Abraham, J.
PDB entry 9yd3: RNA primer non-enzymatic extension product with RNA substrate
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.592 Å
Deposited: 2025-09-21
Authors: Fang, Z., Szostak, J.W.
PDB entry 9yd4: RNA primer non-enzymatic extension product with DNA substrate
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.658 Å
Deposited: 2025-09-21
Authors: Fang, Z., Szostak, J.W.
PDB entry 9yd7: Complex of Dihydroorotase from M. jannaschii with Carbamoyl Aspartate
Classification: HYDROLASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-09-22
Authors: Vitali, J., Nix, J.C., Newman, H.E., Colaneri, M.J.
PDB entry 9yd8: Crystal structure of Phospholipase D (PLD) from Arcanobacterium haemolyticum
Classification: HYDROLASE
Source organism: Arcanobacterium haemolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-09-22
Authors: Gismene, C., Doherty, D.Z., Nascimento, A.F.Z., Arni, R.K.
PDB entry 9yda: Cryo-EM structure of active human green cone opsin in complex with chimeric G protein (miniGist)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-09-22
Authors: Yao, W., Fay, J.F., Farrens, D.L.
PDB entry 9ydf: Structure of the cyclic nucleotide binding domain of SLC9C1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2025-09-22
Authors: Lyu, C., Dong, A., Chandrasekaran, R., Mamai, A., Arrowsmith, C.H., Edwards, A.M., Burgess-Brown, N., Tredup, C., Harding, R.J., Structural Genomics Consortium (SGC)
PDB entry 9ydg: Crystal structure of the human DCAF1 WDR domain in complex with OICR-41074
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-09-22
Authors: kimani, S., Dong, A., Li, Y., Seitova, A., Mamai, A., Al-awar, R., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9ydm: Targeting PTPN22 at non-orthosteric binding sites - a fragment approach
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-09-22
Authors: Di Lello, P., Wells, M.M.
PDB entry 9ydp: Human delta opioid receptor complex with mini-Gi and agonist DADLE
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.95 Å
Deposited: 2025-09-23
Authors: Mobbs, J.I., Venugopal, H., Thal, D.M.
PDB entry 9ydq: Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3614
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.94 Å
Deposited: 2025-09-23
Authors: Mobbs, J.I., Venugopal, H., Thal, D.M.