LiteFold/PDB huggingface dataset:
PDB entry 3wv5: Complex structure of VinN with 3-methylaspartate
Classification: LIGASE
Source organism: Streptomyces halstedii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-05-15
Authors: Miyanaga, A., Cieslak, J., Shinohara, Y., Kudo, F., Eguchi, T.
PDB entry 3wv6: Crystal Structure of a protease-resistant mutant form of human galectin-9
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-05-16
Authors: Yoshida, H., Kamitori, S.
PDB entry 3wv7: HcgE from Methanothermobacter marburgensis
Classification: TRANSFERASE
Source organism: Methanothermobacter marburgensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-16
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wv8: ATP-bound HcgE from Methanothermobacter marburgensis
Classification: TRANSFERASE
Source organism: Methanothermobacter marburgensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-16
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wv9: Guanylylpyridinol (GP)- and ATP-bound HcgE from Methanothermobacter marburgensis
Classification: TRANSFERASE
Source organism: Methanothermobacter marburgensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2014-05-16
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wva: SeMet-labelled HcgF from Methanocaldococcus jannaschii
Classification: HYDROLASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2014-05-16
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wvb: HcgF from Methanocaldococcus jannaschii
Classification: HYDROLASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-05-16
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wvc: Guanylylpyridinol (GP)-bound HcgF from Methanocaldococcus jannaschii
Classification: HYDROLASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-16
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wvd: Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 50 min
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2014-05-17
Authors: Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3wve: Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, before photo-activation
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2014-05-17
Authors: Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3wvf: Crystal structure of YidC from Escherichia coli
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2014-05-20
Authors: Kumazaki, K., Tsukazaki, T., Kishimoto, T., Ishitani, R., Nureki, O.
PDB entry 3wvg: Time-Resolved Crystal Structure of HindIII with 0sec soaking
Classification: HYDROLASE/DNA
Source organism: Haemophilus influenzae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2014-05-21
Authors: Kawamura, T., Kobayashi, T., Watanabe, N.
PDB entry 3wvh: Time-Resolved Crystal Structure of HindIII with 25sec soaking
Classification: HYDROLASE/DNA
Source organism: Haemophilus influenzae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2014-05-21
Authors: Kawamura, T., Kobayashi, T., Watanabe, N.
PDB entry 3wvi: Time-Resolved Crystal Structure of HindIII with 40 sec soaking
Classification: HYDROLASE/DNA
Source organism: Haemophilus influenzae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2014-05-21
Authors: Kawamura, T., Kobayashi, T., Watanabe, N.
PDB entry 3wvj: The crystal structure of native glycosidic hydrolase
Classification: HYDROLASE
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-05-22
Authors: Chen, C.C., Huang, J.W., Zhao, P., Ko, T.P., Huang, C.H., Chan, H.C., Huang, Z., Liu, W., Cheng, Y.S., Liu, J.R., Guo, R.T.
PDB entry 3wvk: Time-Resolved Crystal Structure of HindIII with 230sec soaking
Classification: HYDROLASE/DNA
Source organism: Haemophilus influenzae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-22
Authors: Kawamura, T., Kobayashi, T., Watanabe, N.
PDB entry 3wvl: Crystal structure of the football-shaped GroEL-GroES complex (GroEL: GroES2:ATP14) from Escherichia coli
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.788 Å
Deposited: 2014-05-23
Authors: Koike-Takeshita, A., Arakawa, T., Taguchi, H., Shimamura, T.
PDB entry 3wvm: The 0.88 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with stearic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.88 Å
Deposited: 2014-05-25
Authors: Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Matsumura, H., Murakami, S., Inoue, T., Murata, M.
PDB entry 3wvn: Complex structure of VinN with L-aspartate
Classification: LIGASE
Source organism: Streptomyces halstedii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-05-30
Authors: Miyanaga, A., Cieslak, J., Shinohara, Y., Kudo, F., Eguchi, T.
PDB entry 3wvo: Crystal structure of Thermobifida fusca Cse1
Classification: CELL INVASION
Source organism: Thermobifida fusca
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2014-06-02
Authors: Yuan, Y.A., Tay, M.
PDB entry 3wvp: Time-Resolved Crystal Structure of HindIII with 60sec soaking
Classification: HYDROLASE/DNA
Source organism: Haemophilus influenzae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-06-02
Authors: Kawamura, T., Kobayashi, T., Watanabe, N.
PDB entry 3wvq: Structure of ATP grasp protein
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces cirratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.955 Å
Deposited: 2014-06-04
Authors: Matsui, T., Noike, M., Ooya, K., Sasaki, I., Hamano, Y., Maruyama, C., Ishikawa, J., Satoh, Y., Ito, H., Dairi, T., Morita, H.
PDB entry 3wvr: Structure of ATP grasp protein with AMP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces cirratus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.175 Å
Deposited: 2014-06-04
Authors: Matsui, T., Noike, M., Ooya, K., Sasaki, I., Hamano, Y., Maruyama, C., Ishikawa, J., Satoh, Y., Ito, H., Dairi, T., Morita, H.
PDB entry 3wvs: Crystal Structure of Cytochrome P450revI
Classification: OXIDOREDUCTASE
Source organism: Streptomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2014-06-06
Authors: Nagano, S., Takahashi, S., Osada, H., Shiro, Y.
PDB entry 3wvt: Structural and biochemical study of equine lentivirus receptor 1
Classification: PROTEIN BINDING
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2014-06-07
Authors: Qian, L.
PDB entry 3wvu: Crystal Structure of RuCO/apo-R52CFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2014-06-09
Authors: Fujita, K., Tanaka, Y., Abe, S., Hikage, T., Kuchimaru, T., Kizaka-Kondoh, S., Ueno, T.
PDB entry 3wvv: Crystal Structure of RuCO/apo-E45C_C48AFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2014-06-09
Authors: Fujita, K., Tanaka, Y., Abe, S., Hikage, T., Kuchimaru, T., Kizaka-Kondoh, S., Ueno, T.
PDB entry 3wvw: Crystal structure of RuCO/apo-WTFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-06-09
Authors: Fujita, K., Tanaka, Y., Abe, S., Hikage, T., Kuchimaru, T., Kizaka-Kondoh, S., Ueno, T.
PDB entry 3wvx: Structure of D48A hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2014-06-10
Authors: Kawaguchi, Y., Yoneda, K., Araki, T.
PDB entry 3wvy: Structure of D48A hen egg white lysozyme in complex with (GlcNAc)4
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2014-06-11
Authors: Kawaguchi, Y., Yoneda, K., Araki, T.
PDB entry 3wvz: Crystal structure of Hikeshi, a new nuclear transport receptor of Hsp70
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2014-06-12
Authors: Song, J., Kose, S., Watanabe, A., Son, S.Y., Choi, S., Hong, R.H., Yamashita, E., Park, I.Y., Imamoto, N., Lee, S.J.
PDB entry 3ww0: Crystal structure of F97A mutant, a new nuclear transport receptor of Hsp70
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-06-12
Authors: Song, J., Kose, S., Watanabe, A., Son, S.Y., Choi, S., Hong, R.H., Yamashita, E., Park, I.Y., Imamoto, N., Lee, S.J.
PDB entry 3ww1: X-ray structure of Cellulomonas parahominis L-ribose isomerase with L-ribose
Classification: ISOMERASE
Source organism: Cellulomonas parahominis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-06-13
Authors: Terami, Y., Yoshida, H., Takata, G., Kamitori, S.
PDB entry 3ww2: X-ray structures of Cellulomonas parahominis L-ribose isomerase with L-psicose
Classification: ISOMERASE
Source organism: Cellulomonas parahominis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-06-13
Authors: Terami, Y., Yoshida, H., Takata, G., Kamitori, S.
PDB entry 3ww3: X-ray structures of Cellulomonas parahominis L-ribose isomerase with no ligand
Classification: ISOMERASE
Source organism: Cellulomonas parahominis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-06-13
Authors: Terami, Y., Yoshida, H., Takata, G., Kamitori, S.
PDB entry 3ww4: X-ray structures of Cellulomonas parahominis L-ribose isomerase with L-allose
Classification: ISOMERASE
Source organism: Cellulomonas parahominis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-06-13
Authors: Terami, Y., Yoshida, H., Takata, G., Kamitori, S.
PDB entry 3ww5: Crystal Structure of hen egg white lysozyme mutant N46E/D52S
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2014-06-17
Authors: Abe, Y., Kubota, M., Ito, Y., Imoto, T., Ueda, T.
PDB entry 3ww6: Crystal Structure of hen egg white lysozyme mutant N46D/D52S
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2014-06-17
Authors: Abe, Y., Kubota, M., Ito, Y., Imoto, T., Ueda, T.
PDB entry 3ww7: Crystal structure of the computationally designed Pizza2 protein
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.697 Å
Deposited: 2014-06-17
Authors: Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.
PDB entry 3ww8: Crystal structure of the computationally designed Pizza3 protein
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.402 Å
Deposited: 2014-06-17
Authors: Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.
PDB entry 3ww9: Crystal structure of the computationally designed Pizza6 protein
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2014-06-17
Authors: Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.
PDB entry 3wwa: Crystal structure of the computationally designed Pizza7 protein after heat treatment
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.988 Å
Deposited: 2014-06-17
Authors: Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.
PDB entry 3wwb: Crystal structure of the computationally designed Pizza2-SR protein
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-06-17
Authors: Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.
PDB entry 3wwc: The complex of pOPH_S172A of pNPB
Classification: HYDROLASE
Source organism: Pseudomonas sp. VM15C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2014-06-17
Authors: Yang, Y., Ko, T.P., Li, J.H., Liu, L., Huang, C.H., Chen, J., Guo, R.T., Du, G.C.
PDB entry 3wwd: The complex of pOPH_S172C with DMSO
Classification: HYDROLASE
Source organism: Pseudomonas sp. VM15C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2014-06-17
Authors: Yang, Y., Ko, T.P., Li, J.H., Liu, L., Huang, C.H., Chen, J., Guo, R.T., Du, G.C.
PDB entry 3wwe: The complex of pOPH with PEG
Classification: HYDROLASE
Source organism: Pseudomonas sp. VM15C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-06-17
Authors: Yang, Y., Ko, T.P., Li, J.H., Liu, L., Huang, C.H., Chen, J., Guo, R.T., Du, G.C.
PDB entry 3wwf: Crystal structure of the computationally designed Pizza2-SR protein
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2014-06-17
Authors: Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.
PDB entry 3wwg: Crystal structure of the N-glycan-deficient variant N448A of isopullulanase complexed with isopanose
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-06-17
Authors: Miyazaki, T., Yashiro, H., Nishikawa, A., Tonozuka, T.
PDB entry 3wwh: Crystal structure of the first R-stereoselective -transaminase identified from Arthrobacter sp. KNK168 (FERM-BP-5228)
Classification: TRANSFERASE
Source organism: Arthrobacter sp. KNK168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2014-06-18
Authors: Guan, L.J., Ohtsuka, J., Okai, M., Miyakawa, T., Mase, T., Zhi, Y., Ito, N., Yasohara, Y., Tanokura, M.
PDB entry 3wwi: Crystal structure of the G136F mutant of the first R-stereoselective -transaminase identified from Arthrobacter sp. KNK168 (FERM-BP-5228)
Classification: TRANSFERASE
Source organism: Arthrobacter sp. KNK168
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2014-06-18
Authors: Guan, L.J., Ohtsuka, J., Miyakawa, T., Zhi, Y., Ito, N., Yasohara, Y., Tanokura, M.
PDB entry 3wwj: Crystal structure of an engineered sitagliptin-producing transaminase, ATA-117-Rd11
Classification: TRANSFERASE
Source organism: Arthrobacter sp. KNK168
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-06-18
Authors: Guan, L.J., Ohtsuka, J., Okai, M., Miyakawa, T., Mase, T., Zhi, Y., Hou, F., Ito, N., Yasohara, Y., Tanokura, M.
PDB entry 3wwk: Crystal structure of CLEC-2 in complex with rhodocytin
Classification: SUGAR BINDING PROTEIN
Source organism: Calloselasma rhodostoma; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2014-06-20
Authors: Nagae, M., Morita-Matsumoto, K., Kato, M., Kato-Kaneko, M., Kato, Y., Yamaguchi, Y.
PDB entry 3wwl: Crystal structure of lysine biosynthetic amino acid carrier protein LysW from Thermus thermophilus conjugated with alpha-aminoadipate
Classification: METAL BINDING PROTEIN
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2014-06-21
Authors: Yoshida, A., Tomita, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3wwm: Crystal structure of LysZ from Thermus thermophilus with ADP
Classification: TRANSFERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-06-21
Authors: Yoshida, A., Tomita, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3wwn: Crystal structure of LysZ from Thermus thermophilus complex with LysW
Classification: METAL BINDING PROTEIN/TRANSFERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2014-06-21
Authors: Yoshida, A., Tomita, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3wwo: S-selective hydroxynitrile lyase from Baliospermum montanum (apo1)
Classification: LYASE
Source organism: Baliospermum montanum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2014-06-23
Authors: Nakano, S., Dadashipour, M., Asano, Y.
PDB entry 3wwp: S-selective hydroxynitrile lyase from Baliospermum montanum (apo2)
Classification: LYASE
Source organism: Baliospermum montanum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-06-23
Authors: Nakano, S., Dadashipour, M., Asano, Y.
PDB entry 3wwq: Crystal structure of FAAP20 UBZ domain in complex with Lys63-linked diubiquitin
Classification: PROTEIN BINDING/METAL BINDING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-06-23
Authors: Sato, Y., Fukai, S.
PDB entry 3wwr: Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1-((((1S,2R,6R,Z)-2,6-dihydroxy-4-((E)-2-((1R,3aS,7aR)-1-((R)-6-hydroxy-6-methylheptan-2-yl)-7a-methylhexahydro-1H-inden-4(2H)-ylidene)ethylidene)-3-methylenecyclohexyl)oxy)methyl)cyclopropanecarbonitrile
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2014-06-27
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3wws: Crystal structure of Serine/threonine-protein kinase 3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2014-06-27
Authors: Lee, S.J., Song, J., Yamashita, E.
PDB entry 3wwt: Crystal Structure of the Y3:STAT1ND complex
Classification: TRANSCRIPTION/VIRAL PROTEIN
Source organism: Homo sapiens; Sendai virus (Z)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-06-27
Authors: Oda, K., Sakaguchi, T., Matoba, Y.
PDB entry 3wwv: C-terminal domain of stomatin operon partner protein 1510-C from Pyrococcus horikoshii
Classification: UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-06-30
Authors: Yokoyama, H., Matsui, I.
PDB entry 3wwx: Crystal structure of D-stereospecific amidohydrolase from Streptomyces sp. 82F2
Classification: HYDROLASE
Source organism: Streptomyces sp. 82F2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2014-07-03
Authors: Arima, J., Nagano, S., Hino, T., Shimone, K., Isoda, Y., Mori, N.
PDB entry 3wx0: The crystal structure of D-lactate dehydrogenase from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2014-07-08
Authors: Furukawa, N., Togawa, M., Miyanaga, A., Nakajima, M., Taguchi, H.
PDB entry 3wx1: Mouse Cereblon thalidomide binding domain, selenomethionine derivative
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2014-07-10
Authors: Mori, T., Ito, T., Hirano, Y., Yamaguchi, Y., Handa, H., Hakoshima, T.
PDB entry 3wx2: Mouse Cereblon thalidomide binding domain, native
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-07-10
Authors: Mori, T., Ito, T., Hirano, Y., Yamaguchi, Y., Handa, H., Hakoshima, T.
PDB entry 3wx4: CRYSTAL STRUCTURE of T4 PHAGE ARN PROTEIN
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-07-16
Authors: Ho, C.H., Wang, H.C., Ko, T.P., Wang, A.H.J.
PDB entry 3wx5: Crystal structure of metagenome-derived glycoside hydrolase family 12 endoglucanase
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2014-07-17
Authors: Okano, H., Angkawidjaja, C., Kanaya, S.
PDB entry 3wx6: Crystal structure of Type Six Secretion System protein
Classification: UNKNOWN FUNCTION
Source organism: Burkholderia pseudomallei K96243
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-07-17
Authors: Jobichen, C., Sivaraman, J.
PDB entry 3wx7: Crystal structure of COD
Classification: HYDROLASE
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.349 Å
Deposited: 2014-07-18
Authors: Park, S.-Y., Sugiyama, K., Hirano, T., Nishio, T.
PDB entry 3wx8: Purification, characterization and structure of nucleoside diphosphate kinase from Drosophila S2 cells
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.952 Å
Deposited: 2014-07-25
Authors: Qian, L.
PDB entry 3wx9: Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with PMP, GLA, 4AD, 2OG, GLU and KYA
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2014-07-28
Authors: Okada, K., Angkawidjaja, C., Koga, Y., Kanaya, S.
PDB entry 3wxa: X-ray crystal structural analysis of the complex between ALG-2 and Sec31A peptide
Classification: APOPTOSIS/TRANSPORT PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2014-07-29
Authors: Takahashi, T., Suzuki, H., Kawasaki, M., Shibata, H., Wakatsuki, S., Maki, M.
PDB entry 3wxb: Crystal structure of NADPH bound carbonyl reductase from chicken fatty liver
Classification: OXIDOREDUCTASE ACTIVATOR
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2014-07-29
Authors: Yoneda, K., Sakuraba, H., Fukuda, Y., Sone, T., Araki, T., Ohshima, T.
PDB entry 3wxc: Crystal Structure of IMP-1 metallo-beta-lactamase complexed with a 3-aminophtalic acid inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-07-29
Authors: Saito, J., Watanabe, T., Yamada, M.
PDB entry 3wxe: Crystal structure of CYLD USP domain (C596S) in complex with Met1-linked diubiquitin
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Danio rerio; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-07-30
Authors: Sato, Y., Fukai, S.
PDB entry 3wxf: Crystal structure of CYLD USP domain (C596S E674Q) in complex with Met1-linked diubiquitin
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Danio rerio; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-07-30
Authors: Sato, Y., Fukai, S.
PDB entry 3wxg: Crystal structure of CYLD USP domain (C596A) in complex with Lys63-linked diubiquitin
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Danio rerio; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2014-07-30
Authors: Sato, Y., Fukai, S.
PDB entry 3wxi: Crystal structure of trypanosoma brucei gambiense glycerol kinase (ligand-free form)
Classification: TRANSFERASE
Source organism: Trypanosoma brucei gambiense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-08-01
Authors: Balogun, E.O., Inaoka, D.K., Shiba, T., Kido, Y., Tsuge, T., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Michels, P.A.M., Kita, K., Harada, S.
PDB entry 3wxj: Crystal structure of trypanosoma brucei gambiense glycerol kinase in complex with glycerol 3-phosphate
Classification: TRANSFERASE
Source organism: Trypanosoma brucei gambiense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-08-01
Authors: Balogun, E.O., Inaoka, D.K., Shiba, T., Kido, Y., Tsuge, C., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Michels, P.A.M., Kita, K., Harada, S.
PDB entry 3wxk: Crystal structure of trypanosoma brucei gambiense glycerol kinase in complex with glycerol
Classification: TRANSFERASE
Source organism: Trypanosoma brucei gambiense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2014-08-01
Authors: Balogun, E.O., Inaoka, D.K., Shiba, T., Kido, Y., Tsuge, C., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Michels, P.A.M., Kita, K., Harada, S.
PDB entry 3wxl: Crystal structure of trypanosoma brucei gambiense glycerol kinase complex with adp, mg2+, and glycerol
Classification: TRANSFERASE
Source organism: Trypanosoma brucei gambiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-08-01
Authors: Balogun, E.O., Inaoka, D.K., Shiba, T., Kido, Y., Tsuge, C., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Michels, P.A.M., Kita, K., Harada, S.
PDB entry 3wxm: Crystal structure of archaeal Pelota and GTP-bound EF1 alpha complex
Classification: TRANSLATION/HYDROLASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-08-04
Authors: Kobayashi, K., Ishitani, R., Nureki, O.
PDB entry 3wxo: Crystal structure of isoniazid bound KatG catalase peroxidase from Synechococcus elongatus PCC7942
Classification: OXIDOREDUCTASE
Source organism: Synechococcus elongatus PCC 7942
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2014-08-04
Authors: Wada, K., Tada, T., Kamachi, S.
PDB entry 3wxp: Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with cellobiose
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2014-08-04
Authors: Kataoka, M., Ishikawa, K.
PDB entry 3wxq: Serial femtosecond X-ray structure of human fatty acid-binding protein type-3 (FABP3) in complex with stearic acid (C18:0) determined using X-ray free-electron laser at SACLA
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-08-04
Authors: Mizohata, E., Suzuki, M., Kakinouchi, K., Sugiyama, S., Murata, M., Sugahara, M., Nango, E., Tanaka, T., Tanaka, R., Tono, K., Song, C., Hatsui, T., Joti, Y., Yabashi, M., Iwata, S.
PDB entry 3wxr: Yeast 20S proteasome with a mutation of alpha7 subunit
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2014-08-06
Authors: Yashiroda, H., Toda, Y., Otsu, S., Takagi, K., Mizushima, T., Murata, S.
PDB entry 3wxs: Thaumatin structure determined by SPring-8 Angstrom Compact free electron Laser (SACLA)
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-08-07
Authors: Masuda, T., Nango, E., Sugahara, M., Mizohata, E., Tanaka, T., Tanaka, R., Suzuki, M., Mikami, B., Iwata, S.
PDB entry 3wxt: Crystal structure of hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-08-08
Authors: Sugahara, M., Nango, E., Suzuki, M.
PDB entry 3wxu: Crystal structure of hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-08-08
Authors: Sugahara, M., Nango, E., Suzuki, M.
PDB entry 3wxx: Crystal Structure of a T3SS complex from Aeromonas hydrophila
Classification: Membrane protein/Chaperone
Source organism: Aeromonas hydrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-08-12
Authors: Nguyen, V.S., Jobichen, C., Sivaraman, J., Henry, Y.K.M.
PDB entry 3wxy: Crystal structure of CsyB complexed with CoA-SH
Classification: TRANSFERASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.706 Å
Deposited: 2014-08-13
Authors: Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.
PDB entry 3wxz: The structure of the I375F mutant of CsyB
Classification: TRANSFERASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.303 Å
Deposited: 2014-08-13
Authors: Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.
PDB entry 3wy0: The I375W mutant of CsyB complexed with CoA-SH
Classification: TRANSFERASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2014-08-13
Authors: Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.
PDB entry 3wy1: Crystal structure of alpha-glucosidase
Classification: HYDROLASE
Source organism: Halomonas sp. H11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-08-18
Authors: Shen, X., Gai, Z., Kato, K., Yao, M.
PDB entry 3wy2: Crystal structure of alpha-glucosidase in complex with glucose
Classification: HYDROLASE
Source organism: Halomonas sp. H11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.471 Å
Deposited: 2014-08-18
Authors: Shen, X., Gai, Z., Kato, K., Yao, M.
PDB entry 3wy3: Crystal structure of alpha-glucosidase mutant D202N in complex with glucose and glycerol
Classification: HYDROLASE
Source organism: Halomonas sp. H11
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2014-08-18
Authors: Shen, X., Gai, Z., Kato, K., Yao, M.
PDB entry 3wy4: Crystal structure of alpha-glucosidase mutant E271Q in complex with maltose
Classification: HYDROLASE
Source organism: Halomonas sp. H11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-08-18
Authors: Shen, X., Gai, Z., Kato, K., Yao, M.
PDB entry 3wy6: Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with laminaribiose
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2014-08-20
Authors: Kataoka, M., Ishikawa, K.
PDB entry 3wy7: Crystal structure of Mycobacterium smegmatis 7-Keto-8-aminopelargonic acid (KAPA) synthase BioF
Classification: TRANSFERASE
Source organism: Mycobacterium smegmatis str. MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-08-20
Authors: Fan, S.H., Li, D.F., Wang, D.C., Chen, G.J., Zhang, X.E., Bi, L.J.
PDB entry 3wy8: Crystal Structure of Protease Anisep from Arthrobacter Nicotinovorans
Classification: HYDROLASE
Source organism: Arthrobacter nicotinovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-08-20
Authors: Sone, T., Haraguchi, Y., Kuwahara, A., Ose, T., Takano, M., Abe, A., Tanaka, M., Tanaka, I., Asano, K.
PDB entry 3wy9: Crystal structure of a complex of the archaeal ribosomal stalk protein aP1 and the GDP-bound archaeal elongation factor aEF1alpha
Classification: TRANSLATION/RIBOSOMAL PROTEIN
Source organism: Pyrococcus horikoshii OT3; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-08-22
Authors: Ito, K., Honda, T., Suzuki, T., Miyoshi, T., Murakami, R., Yao, M., Uchiumi, T.
PDB entry 3wya: Crystal structure of GDP-bound EF1alpha from Pyrococcus horikoshii
Classification: TRANSLATION
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2014-08-22
Authors: Ito, K., Honda, T., Suzuki, T., Miyoshi, T., Murakami, R., Yao, M., Uchiumi, T.
PDB entry 3wyb: Structure of a meso-diaminopimelate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Ureibacillus thermosphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-08-25
Authors: Sakuraba, H., Akita, H., Ohshima, T.
PDB entry 3wyc: Structure of a meso-diaminopimelate dehydrogenase in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Ureibacillus thermosphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2014-08-25
Authors: Sakuraba, H., Akita, H., Ohshima, T.
PDB entry 3wyd: C-terminal esterase domain of LC-Est1
Classification: HYDROLASE
Source organism: uncultured organism
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2014-08-26
Authors: Okano, H., Hong, X., Angkawidjaja, C., Kanaya, S.
PDB entry 3wye: Crystal Structure of chimeric engineered (2S,3S)-butanediol dehydrogenase complexed with NAD+
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium glutamicum; Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2014-08-26
Authors: Shimegi, T., Oyama, T., Kusunoki, M., Ui, S.
PDB entry 3wyf: Crystal structure of Xpo1p-Yrb2p-Gsp1p-GTP complex
Classification: GTP-BINDING PROTEIN/GTP-BINDING PROTEIN INHIBITOR
Source organism: Saccharomyces cerevisiae AWRI796; Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2014-08-26
Authors: Koyama, M., Shirai, N., Matsuura, Y.
PDB entry 3wyg: Crystal structure of Xpo1p-PKI-Gsp1p-GTP complex
Classification: GTP-BINDING PROTEIN/GTP-BINDING PROTEIN INHIBITOR
Source organism: Homo sapiens; Saccharomyces cerevisiae AWRI796; Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-08-26
Authors: Koyama, M., Shirai, N., Matsuura, Y.
PDB entry 3wyh: Structure of disulfide bond deletion mutant of ostrich egg white lysozyme
Classification: HYDROLASE
Source organism: Struthio camelus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2014-08-28
Authors: Kawaguchi, Y., Yoneda, K., Araki, T.
PDB entry 3wyi: Structure of S. aureus undecaprenyl diphosphate synthase
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-08-29
Authors: Gao, J., Ko, T.P., Huang, C.H., Oldfield, E., Guo, R.T.
PDB entry 3wyj: Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-789
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-08-29
Authors: Gao, J., Ko, T.P., Huang, C.H., Oldfield, E., Guo, R.T.
PDB entry 3wyk: Crystal structure of the catalytic domain of PDE10A complexed with 3-(1-phenyl-1H-pyrazol-5-yl)-1-(3-(trifluoromethyl)phenyl)pyridazin-4(1H)-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-09-01
Authors: Oki, H., Hayano, Y.
PDB entry 3wyl: Crystal structure of the catalytic domain of PDE10A complexed with 5-methoxy-3-(1-phenyl-1H-pyrazol-5-yl)-1-(3-(trifluoromethyl)phenyl)pyridazin-4(1H)-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2014-09-01
Authors: Oki, H., Hayano, Y.
PDB entry 3wym: Crystal structure of the catalytic domain of PDE10A complexed with 1-(2-fluoro-4-(1H-pyrazol-1-yl)phenyl)-5-methoxy-3-(1-phenyl-1H-pyrazol-5-yl)pyridazin-4(1H)-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-09-01
Authors: Oki, H., Hayano, Y.
PDB entry 3wyn: Structure of calcium bound cutinase Est119 from Thermobifida alba.
Classification: HYDROLASE
Source organism: Thermobifida alba
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2014-09-02
Authors: Kitadokoro, K., Thumarat, U., Kawai, F.
PDB entry 3wyo: Heterodimeric myoglobin formed by domain swapping
Classification: OXYGEN BINDING
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-09-04
Authors: Lin, Y.W., Nagao, S., Zhang, M., Shomura, Y., Higuchi, Y., Hirota, S.
PDB entry 3wyp: Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution
Classification: BIOTIN BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2014-09-05
Authors: Kawato, T., Mizohata, E., Meshizuka, T., Doi, H., Kawamura, T., Matsumura, H., Yumura, K., Tsumoto, K., Kodama, T., Inoue, T., Sugiyama, A.
PDB entry 3wyq: Crystal structure of the low-immunogenic core streptavidin mutant LISA-314 (Y22S/Y83S/R84K/E101D/R103K/E116N) at 1.0 A resolution
Classification: BIOTIN BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2014-09-05
Authors: Kawato, T., Mizohata, E., Meshizuka, T., Doi, H., Kawamura, T., Matsumura, H., Yumura, K., Tsumoto, K., Kodama, T., Inoue, T., Sugiyama, A.
PDB entry 3wyr: Crystal structure of Killer cell immunoglobulin-like receptor 2DL4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-09-07
Authors: Vivian, J.P., Moradi, S., Rossjohn, J.
PDB entry 3wyw: Structural characterization of catalytic site of a Nilaparvata lugens delta-class glutathione transferase
Classification: TRANSFERASE
Source organism: Nilaparvata lugens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-09-09
Authors: Yamamoto, K., Higashiura, A., Nakagawa, A.
PDB entry 3wyx: CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH 6-((3-(cyanomethoxy)-4-(1-methyl-1H-pyrazol-4-yl)phenyl)amino)-2-(cyclohexylamino)nicotinonitrile
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-09-09
Authors: Kusakabe, K., Ide, N., Daigo, Y., Itoh, T., Yamamoto, T., Kojima, E., Mitsuoka, Y., Tadano, G., Tagashira, S., Higashino, K., Okano, Y., Sato, Y., Inoue, M., Iguchi, M., Kanazawa, T., Ishioka, Y., Dohi, K., Kido, Y., Sakamoto, S., Ando, S., Maeda, M., Higaki, M., Yoshizawa, H., Mura, H., Nakamura, Y.
PDB entry 3wyy: CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH (E)-3-(4-((6-(((3s,5s,7s)-adamantan-1-yl)amino)-4-amino-5-cyanopyridin-2-yl)amino)-2-(cyanomethoxy)phenyl)-N-(2-methoxyethyl)acrylamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2014-09-10
Authors: Kusakabe, K., Ide, N., Daigo, Y., Itoh, T., Yamamoto, T., Kojima, E., Mitsuoka, Y., Tadano, G., Tagashira, S., Higashino, K., Okano, Y., Sato, Y., Inoue, M., Iguchi, M., Kanazawa, T., Ishioka, Y., Dohi, K., Kido, Y., Sakamoto, S., Ando, S., Maeda, M., Higaki, M., Yoshizawa, H., Murai, H., Nakamura, Y.
PDB entry 3wyz: On archaeal homologs of the human RNase P protein Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis KOD1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2014-09-11
Authors: Suematsu, K., Ueda, T., Nakashima, T., Kakuta, Y., Kimura, M.
PDB entry 3wz0: On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis KOD1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2014-09-11
Authors: Suematsu, K., Ueda, T., Nakashima, T., Kakuta, Y., Kimura, M.
PDB entry 3wz1: Catalytic domain of beta-agarase from Microbulbifer thermotolerans JAMB-A94
Classification: HYDROLASE
Source organism: Microbulbifer thermotolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-09-12
Authors: Takagi, E., Hatada, Y., Akita, M., Ohta, Y., Yokoi, G., Miyazaki, T., Nishikawa, A., Tonozuka, T.
PDB entry 3wz2: Crystal structure of Pyrococcus furiosus PbaA, an archaeal homolog of proteasome-assembly chaperone
Classification: CHAPERONE
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2014-09-18
Authors: Sikdar, A., Satoh, T., Kawasaki, M., Kato, K.
PDB entry 3wz3: Structure of a periplasmic fragment of TraM
Classification: UNKNOWN FUNCTION
Source organism: Plasmid R64
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-09-18
Authors: Kuroda, T., Kubori, T., Uchida, Y., Nagai, H., Imada, K.
PDB entry 3wz4: Structure of the periplasmic domain of DotI (crystal form I)
Classification: UNKNOWN FUNCTION
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-09-18
Authors: Kuroda, T., Kubori, T., Uchida, Y., Nagai, H., Imada, K.
PDB entry 3wz5: Structure of the periplasmic domain of DotI (crystal form II)
Classification: UNKNOWN FUNCTION
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2014-09-18
Authors: Kuroda, T., Kubori, T., Uchida, Y., Nagai, H., Imada, K.
PDB entry 3wz6: Endothiapepsin in complex with Gewald reaction-derived inhibitor (5)
Classification: Hydrolase/Hydrolase inhibitor
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.404 Å
Deposited: 2014-09-19
Authors: Kuhnert, M., Steuber, H., Diederich, W.E.
PDB entry 3wz7: Endothiapepsin in complex with Gewald reaction-derived inhibitor (6)
Classification: Hydrolase/Hydrolase inhibitor
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-09-19
Authors: Kuhnert, M., Steuber, H., Diederich, W.E.
PDB entry 3wz8: Endothiapepsin in complex with Gewald reaction-derived inhibitor (8)
Classification: Hydrolase/Hydrolase inhibitor
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2014-09-19
Authors: Kuhnert, M., Steuber, H., Diederich, W.E.
PDB entry 3wzd: KDR in complex with ligand lenvatinib
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2014-09-24
Authors: Okamoto, K., Ikemori_Kawada, M., Inoue, A., Matsui, J.
PDB entry 3wze: KDR in complex with ligand sorafenib
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-09-24
Authors: Okamoto, K., Ikemori_Kawada, M., Inoue, A., Matsui, J.
PDB entry 3wzf: Crystal structure of human cytoplasmic aspartate aminotransferase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.991 Å
Deposited: 2014-09-24
Authors: Jiang, X., Chang, H., Zhou, Y., Chen, L., Yang, Q.
PDB entry 3wzg: Crystal structure of AfCsx3
Classification: TRANSCRIPTION
Source organism: Archaeoglobus fulgidus DSM 4304
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2014-09-25
Authors: Yuan, Y.A., Yan, X.
PDB entry 3wzh: Crystal structure of AfCsx3
Classification: TRANSCRIPTION
Source organism: Archaeoglobus fulgidus DSM 4304
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2014-09-25
Authors: Yuan, Y.A., Yan, X.
PDB entry 3wzi: Crystal structure of AfCsx3 in complex with ssRNA
Classification: TRANSCRIPTION/RNA
Source organism: Archaeoglobus fulgidus DSM 4304; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-09-25
Authors: Yuan, Y.A., Yan, X.
PDB entry 3wzj: CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH 4-(6-(cyclohexylamino)-8-(((tetrahydro-2H-pyran-4-yl)methyl)amino)imidazo[1,2-b]pyridazin-3-yl)-N-cyclopropylbenzamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2014-09-29
Authors: Kusakabe, K., Ide, N., Daigo, Y., Itoh, T., Yamamoto, T., Kojima, E., Mitsuoka, Y., Tadano, G., Tagashira, S., Higashino, K., Okano, Y., Sato, Y., Inoue, M., Iguchi, M., Kanazawa, T., Ishioka, Y., Dohi, K., Kido, Y., Sakamoto, S., Ando, S., Maeda, M., Higaki, M., Yoshizawa, H., Mura, H., Nakamura, Y.
PDB entry 3wzk: CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH N-cyclopropyl-4-(8-((thiophen-2-ylmethyl)amino)imidazo[1,2-a]pyrazin-3-yl)benzamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-09-29
Authors: Kusakabe, K., Ide, N., Daigo, Y., Itoh, T., Yamamoto, T., Kojima, E., Mitsuoka, Y., Tadano, G., Tagashira, S., Higashino, K., Okano, Y., Sato, Y., Inoue, M., Iguchi, M., Kanazawa, T., Ishioka, Y., Dohi, K., Kido, Y., Sakamoto, S., Ando, S., Maeda, M., Higaki, M., Yoshizawa, H., Mura, H., Nakamura, Y.
PDB entry 3wzl: ZEN lactonase
Classification: HYDROLASE
Source organism: Clonostachys rosea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-10-01
Authors: Ko, T.P., Huang, C.H., Liu, J.R., Guo, R.T.
PDB entry 3wzm: ZEN lactonase mutant complex
Classification: HYDROLASE
Source organism: Clonostachys rosea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2014-10-01
Authors: Ko, T.P., Huang, C.H., Liu, J.R., Guo, R.T.
PDB entry 3wzn: Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with biotin at 1.3 A resolution
Classification: BIOTIN BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2014-10-01
Authors: Kawato, T., Mizohata, E., Shimizu, Y., Meshizuka, T., Yamamoto, T., Takasu, N., Matsuoka, M., Matsumura, H., Tsumoto, K., Kodama, T., Kanai, M., Doi, H., Inoue, T., Sugiyama, A.
PDB entry 3wzo: Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with biotin long tail (BTNtail) at 1.5 A resolution
Classification: BIOTIN BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-10-01
Authors: Kawato, T., Mizohata, E., Shimizu, Y., Meshizuka, T., Yamamoto, T., Takasu, N., Matsuoka, M., Matsumura, H., Tsumoto, K., Kodama, T., Kanai, M., Doi, H., Inoue, T., Sugiyama, A.
PDB entry 3wzp: Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.2 A resolution
Classification: BIOTIN BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2014-10-01
Authors: Kawato, T., Mizohata, E., Shimizu, Y., Meshizuka, T., Yamamoto, T., Takasu, N., Matsuoka, M., Matsumura, H., Tsumoto, K., Kodama, T., Kanai, M., Doi, H., Inoue, T., Sugiyama, A.
PDB entry 3wzq: Crystal structure of the core streptavidin mutant V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.7 A resolution
Classification: BIOTIN BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-10-01
Authors: Kawato, T., Mizohata, E., Shimizu, Y., Meshizuka, T., Yamamoto, T., Takasu, N., Matsuoka, M., Matsumura, H., Tsumoto, K., Kodama, T., Kanai, M., Doi, H., Inoue, T., Sugiyama, A.
PDB entry 3wzs: Crystal structure of Trx3 domain of UGGT (detergent-bound form)
Classification: TRANSFERASE
Source organism: Chaetomium thermophilum var. thermophilum DSM 1495
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-10-03
Authors: Zhu, T., Satoh, T., Kato, K.
PDB entry 3wzt: Crystal structure of Trx3 domain of UGGT (detergent-unbound form)
Classification: TRANSFERASE
Source organism: Chaetomium thermophilum var. thermophilum DSM 1495
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2014-10-03
Authors: Zhu, T., Satoh, T., Kato, K.
PDB entry 3wzu: THE STRUCTURE OF MAP2K7 IN COMPLEX WITH 5Z-7-oxozeaenol
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2014-10-07
Authors: Sogabe, Y., Hashimoto, Y., Matsumoto, T., Kinoshita, T.