LiteFold/PDB huggingface dataset:
PDB entry 8tjl: EGFR kinase in complex with pyrazolopyrimidine covalent inhibitor
Classification: TRANSFERASE/TRANSFERASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-07-22
Authors: Beyett, T.S., Eck, M.J.
PDB entry 8tjm: Crystal structure of KPC-44 carbapenemase
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-07-23
Authors: Sun, Z., Palzkill, T., Hu, L., Lin, H., Sankaran, B., Wang, J., Prasad, B.
PDB entry 8tjn: Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked State 1
Classification: BIOSYNTHETIC PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Saccharopolyspora erythraea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2023-07-23
Authors: Cogan, D.P., Soohoo, A.M., Chen, M., Brodsky, K.L., Liu, Y., Khosla, C.
PDB entry 8tjo: Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked Intra-State 1
Classification: BIOSYNTHETIC PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Saccharopolyspora erythraea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2023-07-23
Authors: Cogan, D.P., Soohoo, A.M., Chen, M., Brodsky, K.L., Liu, Y., Khosla, C.
PDB entry 8tjp: KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its elongation ACP partner
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharopolyspora erythraea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2023-07-23
Authors: Cogan, D.P., Soohoo, A.M., Chen, M., Brodsky, K.L., Liu, Y., Khosla, C.
PDB entry 8tjq: Tetrahymena Ribozyme scaffolded Zika Virus xrRNA
Classification: RNA
Source organism: Tetrahymena; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-24
Authors: Langeberg, C.J., Kieft, J.S.
PDB entry 8tjr: CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-a.01 FAB
Classification: Viral Protein/Immune System
Source organism: Human immunodeficiency virus 1; Macaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-07-24
Authors: Morano, N.C., Hoyt, F., Hansen, B., Fischer, E., Shapiro, L.
PDB entry 8tjs: CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO GPZ6-a.01 FAB
Classification: Viral PROTEIN/iMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-07-24
Authors: Morano, N.C., Becker, J.E., Shapiro, L.
PDB entry 8tjt: The Fab fragment of an anti-glucagon receptor (GCGR) antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-07-24
Authors: Dai, J., Carter, P.J., Sudhamsu, J., Kung, J.
PDB entry 8tju: Tetrahymena Ribozyme scaffolded TABV xrRNA
Classification: RNA
Source organism: Tamana bat virus; Tetrahymena
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-07-24
Authors: Langeberg, C.J., Kieft, J.S.
PDB entry 8tjv: Tetrahymena Ribozyme scaffolded Fluoride riboswitch
Classification: RNA
Source organism: Tetrahymena; Thermotoga petrophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-07-24
Authors: Langeberg, C.J., Kieft, J.S.
PDB entry 8tjx: Tetrahymena Ribozyme cryo-EM scaffold
Classification: RNA
Source organism: Tetrahymena
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2023-07-24
Authors: Langeberg, C.J., Kieft, J.S.
PDB entry 8tjy: Structure of Gabija AB complex
Classification: IMMUNE SYSTEM
Source organism: Bacillus cereus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-07-24
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 8tk0: Structure of Gabija AB complex
Classification: IMMUNE SYSTEM
Source organism: Bacillus cereus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-07-24
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 8tk1: Structure of Gabija AB complex 1
Classification: IMMUNE SYSTEM
Source organism: Bacillus cereus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-07-25
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 8tk2: HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE (VHR) complexed with 2-((2,4-difluorobenzyl)amino)-2-oxoacetic acid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-25
Authors: Aleshin, A.E., Wu, J., Lambert, L.J., Cosford, N.D.P., Tautz, L.
PDB entry 8tk3: HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE (VHR) having oxidized catalytic cysteine and complexed with 6-(difluoromethyl)pyrimidin-4-ol at two allosteric sites
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-25
Authors: Aleshin, A.E., Wu, J., Lambert, L.J., Cosford, N.D.P., Tautz, L.
PDB entry 8tk4: HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE (VHR) complexed with phosphate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-25
Authors: Aleshin, A.E., Wu, J., Lambert, L.J., Cosford, N.D.P., Tautz, L.
PDB entry 8tk5: HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE (VHR) complexed with HEPES
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-25
Authors: Aleshin, A.E., Wu, J., Lambert, L.J., Cosford, N.D.P., Tautz, L.
PDB entry 8tk6: HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE (VHR) in apo form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-07-25
Authors: Aleshin, A.E., Wu, J., Lambert, L.J., Cosford, N.D.P., Tautz, L.
PDB entry 8tk7: Myxococcus xanthus EncA protein shell with compartmentalized SNAP-tag cargo protein
Classification: VIRUS LIKE PARTICLE
Source organism: Homo sapiens; Myxococcus xanthus DK 1622
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-07-25
Authors: Andreas, M.P., Kwon, S., Giessen, T.W.
PDB entry 8tk8: Human Type 3 IP3 Receptor - Resting State (+IP3/ATP)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-07-25
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tk9: ZIG-4-INS-6 complex, tetragonal form
Classification: SIGNALING PROTEIN/PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-07-25
Authors: Cheng, S., Baltrusaitis, E., Aziz, Z., Nawrocka, W.I., Ozkan, E.
PDB entry 8tka: Structure of Orthoreovirus RNA Chaperone SigmaNS R6A mutant
Classification: RNA BINDING PROTEIN
Source organism: Mammalian orthoreovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-07-25
Authors: Prasad, B.V.V., Zhao, B., Hu, L.
PDB entry 8tkb: tRNA 2-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 5'-AMP
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-07-25
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tkc: CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-25
Authors: Pletnev, S., Hoyt, F., Fischer, E., Kwong, P.
PDB entry 8tkd: Human Type 3 IP3 Receptor - Preactivated State (+IP3/ATP)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-07-25
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tke: Human Type 3 IP3 Receptor - Preactivated+Ca2+ State (+IP3/ATP/JD Ca2+)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-25
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tkf: Human Type 3 IP3 Receptor - Activated State (+IP3/ATP/JD Ca2+)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-25
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tkg: Human Type 3 IP3 Receptor - Resting State (+IP3/ATP)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-07-25
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tkh: Human Type 3 IP3 Receptor - Labile Resting State 1 (+IP3/ATP)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-25
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tki: Human Type 3 IP3 Receptor - Labile Resting State 2 (+IP3/ATP)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-25
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tkj: Cryo-EM structure of RNA device 43, apo state
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-25
Authors: Stagno, J.R., Deme, J.C., Lee, Y.-T., Wang, Y.-X., Lea, S.M.
PDB entry 8tkk: Cryo-EM structure of RNA device 43 truncation mutant 3 (U100C), apo state
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-07-25
Authors: Stagno, J.R., Deme, J.C., Lee, Y.-T., Wang, Y.-X., Lea, S.M.
PDB entry 8tkl: Murine NF-kappaB p50 Rel Homology Region homodimer in complex with a Test 16-mer kappaB-like DNA
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-07-25
Authors: Mitchel, S., Mealka, M., Rogers, W.E., Milani, C., Acuna, L.M., Huxford, T.
PDB entry 8tkm: Murine NF-kappaB p50 Rel Homology Region homodimer in complex with 17-mer kappaB DNA from human interleukin-6 (IL-6) promoter
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-07-25
Authors: Zhu, N., Mealka, M., Mitchel, S., Rogers, W.E., Huxford, T.
PDB entry 8tkn: Murine NF-kappaB p50 Rel Homology Region homodimer in complex with 10-mer kappaB DNA from human Neutrophil Gelatinase-associated Lipocalin (NGAL) promoter
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-07-25
Authors: Zhu, N., Mealka, M., Mitchel, S., Rogers, W.E., Huxford, T.
PDB entry 8tko: KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its translocation ACP partner of Module 2
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharopolyspora erythraea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-07-25
Authors: Cogan, D.P., Soohoo, A.M., Chen, M., Brodsky, K.L., Liu, Y., Khosla, C.
PDB entry 8tkp: Structure of the C. elegans TMC-2 complex
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-25
Authors: Clark, S., Jeong, H., Goehring, A., Posert, R., Gouaux, E.
PDB entry 8tkq: Cryo-EM structure of human full-length RAD52
Classification: RECOMBINATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-07-25
Authors: Schnicker, N.J., Razzaghi, M., Spies, M.
PDB entry 8tkt: ZIG-4-INS-6 complex, C-centered monoclinic form
Classification: SIGNALING PROTEIN/PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-25
Authors: Cheng, S., Baltrusaitis, E., Aziz, Z., Nawrocka, W.I., Ozkan, E.
PDB entry 8tku: ZIG-4-INS-6 complex, primitive monoclinic form
Classification: SIGNALING PROTEIN/PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-07-25
Authors: Cheng, S., Baltrusaitis, E., Aziz, Z., Nawrocka, W.I., Ozkan, E.
PDB entry 8tkz: Structure of fission yeast Duf89 protein bound to Co2+ and PO4
Classification: HYDROLASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2023-07-26
Authors: Jacewicz, A., Sanchez, A.M., Shuman, S.
PDB entry 8tl0: Structure of activated SAVED-CHAT filament
Classification: IMMUNE SYSTEM
Source organism: Haliangium ochraceum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-26
Authors: Bravo, J.P.K., Taylor, D.W.
PDB entry 8tl1: Structure of Orthoreovirus RNA Chaperone SigmaNS N17
Classification: RNA BINDING PROTEIN
Source organism: Orthoreovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2023-07-26
Authors: Prasad, B.V.V., Zhao, B., Hu, L.
PDB entry 8tl2: CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-26
Authors: Pletnev, S., Hoyt, F., Fischer, E., Kwong, P.
PDB entry 8tl3: CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-26
Authors: Pletnev, S., Hoyt, F., Fischer, E., Kwong, P.
PDB entry 8tl4: CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-26
Authors: Pletnev, S., Hoyt, F., Fischer, E., Kwong, P.
PDB entry 8tl5: CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-26
Authors: Pletnev, S., Hoyt, F., Fischer, E., Kwong, P.
PDB entry 8tl6: Cryo-EM structure of DDB1deltaB-DDA1-DCAF5
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-07-26
Authors: Yue, H., Hunkeler, M., Roy Burman, S.S., Fischer, E.S.
PDB entry 8tl7: CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2023-07-26
Authors: Weidle, C., Borst, A.J.
PDB entry 8tl8: Structure of Orthoreovirus RNA Chaperone SigmaNS R6A mutant in complex with bile acid
Classification: RNA BINDING PROTEIN
Source organism: Orthoreovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-07-26
Authors: Prasad, B.V.V., Zhao, B., Hu, L., Neetu, N.
PDB entry 8tl9: Human Type 3 IP3 Receptor - Resting State (+IP3/ATP)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-26
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tla: Human Type 3 IP3 Receptor - Higher-Order Inhibited State - Symmetry Mate 1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-26
Authors: Paknejad, N., Sapuru, V., Hite, R.K.
PDB entry 8tlb: Crystal structure of the peptidoglycan O-acetyltransferase B (PatB) from Campylobacter jejuni, catalytic domain
Classification: TRANSFERASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-26
Authors: Anderson, A.C., Malloch, T., Clarke, A.J.
PDB entry 8tlc: Human mitochondrial serine hydroxymethyltransferase (SHMT2) in complex with PLP, glycine and tri-glutamate AGF347 inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-07-26
Authors: Katinas, J.M., Dann III, C.E.
PDB entry 8tld: Structure of the IL-5 Signaling Complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-26
Authors: Caveney, N.A., Garcia, K.C.
PDB entry 8tle: CDCA7 (Mouse) Binds Non-B-form 36-mer DNA oligo (sg C2-Form 1)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-07-26
Authors: Horton, J.R., Ren, R., Cheng, X.
PDB entry 8tlf: CDCA7 (Mouse) Binds Non-B-form DNA oligo 36-mer (sg C2-Form 2)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-07-26
Authors: Horton, J.R., Ren, R., Cheng, X.
PDB entry 8tlg: CDCA7 (Mouse) Binds Non-B-form 34-mer DNA oligo
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-07-26
Authors: Horton, J.R., Ren, R., Cheng, X.
PDB entry 8tlh: CDCA7 (Mouse) Binds Non-B-form 32-mer DNA oligo
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-07-26
Authors: Horton, J.R., Ren, R., Cheng, X.
PDB entry 8tli: THERMOLYSIN (100% ISOPROPANOL SOAKED CRYSTALS)
Classification: HYDROLASE
Source organism: Bacillus thermoproteolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1998-10-30
Authors: English, A.C., Done, S.H., Groom, C.R., Hubbard, R.E.
PDB entry 8tlj: CDCA7 (Mouse) Binds Non-B-form 32-mer DNA oligo Containing a 5mC
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-26
Authors: Horton, J.R., Ren, R., Cheng, X.
PDB entry 8tlk: CDCA7 (Human) Binds Non-B-form 32-mer DNA oligo Containing a 5mC
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-07-26
Authors: Horton, J.R., Ren, R., Cheng, X.
PDB entry 8tll: CDCA7 (Mouse) Binds Non-B-form 26-mer DNA oligo
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2023-07-26
Authors: Horton, J.R., Ren, R., Cheng, X.
PDB entry 8tlm: Structure of a class A GPCR/Fab complex
Classification: STRUCTURAL PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-27
Authors: Sun, D., Johnson, M., Masureel, M.
PDB entry 8tln: STRUCTURAL COMPARISON SUGGESTS THAT THERMOLYSIN AND RELATED NEUTRAL PROTEASES UNDERGO HINGE-BENDING MOTION DURING CATALYSIS
Classification: HYDROLASE(METALLOPROTEINASE)
Source organism: Bacillus thermoproteolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 1993-09-01
Authors: Tronrud, D., Matthews, B.W.
PDB entry 8tlo: Crystal Structure Analysis of BCL11A in complex with DNA
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2023-07-27
Authors: Seo, H.-S., Dhe-Paganon, S.
PDB entry 8tlp: Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633_8x without peptide
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-27
Authors: Kennedy, M.A., Stoddard, B.L., Hicks, D.R.
PDB entry 8tlq: Cryo-EM structure of the Rev1-Polzeta-DNA-dCTP complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2023-07-27
Authors: Malik, R., Aggarwal, A.K.
PDB entry 8tlr: Crystal Structure of human HRAS G12C covalently bound to AMG 510
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.70004 Å
Deposited: 2023-07-27
Authors: Morstein, J., Guiley, K.Z., Shokat, K.M.
PDB entry 8tls: Crystal structure of Shewanella benthica Group 1 truncated hemoglobin C51S C71S Y108A variant
Classification: HEME BINDING PROTEIN
Source organism: Shewanella benthica KT99
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-27
Authors: Schultz, T.D., Martinez, J.E., Siegler, M.A., Schlessman, J.L., Lecomte, J.T.J.
PDB entry 8tlt: Cryo-EM structure of Rev1(deltaN)-Polzeta-DNA-dCTP complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-07-27
Authors: Malik, R., Aggarwal, A.K.
PDB entry 8tlu: E. coli MraY mutant-T23P
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-27
Authors: Orta, A.K., Li, Y.E., Clemons, W.M.
PDB entry 8tlv: Crystal structure of MBP and AF9 AHD fusion protein 4AQK in complex with peptidomimetic inhibitor 28
Classification: TRANSLATION
Source organism: Escherichia coli K-12; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.659 Å
Deposited: 2023-07-27
Authors: Yang, Y., Nikolovska-Coleska, Z.
PDB entry 8tlw: Crystal structure of MBP and AF9 AHD fusion protein 3AQA in complex with peptidomimetic inhibitor 28
Classification: TRANSLATION
Source organism: Escherichia coli K-12; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.106 Å
Deposited: 2023-07-27
Authors: Yang, Y., Nikolovska-Coleska, Z.
PDB entry 8tlx: Crystal structure of MBP and AF9 AHD fusion protein 3AQA in complex with peptidomimetic inhibitor 21a
Classification: TRANSLATION
Source organism: Escherichia coli K-12; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.097 Å
Deposited: 2023-07-27
Authors: Yang, Y., Nikolovska-Coleska, Z.
PDB entry 8tly: Human ASCC1 Phosphodiesterase/Ligase Domain
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-07-27
Authors: Tsutakawa, S.E., Tainer, J.A., Arvai, A.S., Thapar, R.
PDB entry 8tlz: Preclinical Characterization of Pan-NKG2D Ligand-Binding NKG2D Receptor Decoys
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-07-27
Authors: Rupert, P.B., Strong, R.
PDB entry 8tm0: Preclinical Characterization of Pan-NKG2D Ligand-Binding NKG2D Receptor Decoys
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.83 Å
Deposited: 2023-07-27
Authors: Rupert, P.B., Strong, R.
PDB entry 8tm1: Antibody N3-1 bound to RBDs in the up and down conformations
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-07-27
Authors: Hsieh, C.-L., McLellan, J.S.
PDB entry 8tm2: Preclinical Characterization of Pan-NKG2D Ligand-Binding NKG2D Receptor Decoys
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-07-27
Authors: Rupert, P.B., Strong, R.
PDB entry 8tm3: Human proteasome alpha ring assembly intermediate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-28
Authors: Zhang, H., Zhao, J.
PDB entry 8tm4: Human pre 13S proteasome assembly intermediate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-28
Authors: Zhang, H., Zhao, J.
PDB entry 8tm5: Human mixed 13S proteasome assembly intermediate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-28
Authors: Zhang, H., Zhao, J.
PDB entry 8tm6: Human premature 20S proteasome assembly intermediate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-07-28
Authors: Zhang, H., Zhao, J.
PDB entry 8tm7: Human NAMPT in complex with substrate NAM and small molecule activator NP-A3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-07-28
Authors: Ratia, K.M., Thatcher, G.R.
PDB entry 8tm8: Monomer structure of monellin loop1 mutant (YENKG)
Classification: PLANT PROTEIN
Source organism: Dioscoreophyllum cumminsii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2023-07-28
Authors: Manjula, R., Pavithra, G.C., Ramaswamy, S., Gosavi, S.
PDB entry 8tm9: Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633_8x bound to peptide
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-07-28
Authors: Kennedy, M.A., Stoddard, B.L., Hicks, D.R.
PDB entry 8tma: Antibody N3-1 bound to RBD in the up conformation
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-29
Authors: Hsieh, C.-L., McLellan, J.S.
PDB entry 8tmb: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C12 and 20 mM MgCl2, State MG20-1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmc: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C12 and 20 mM MgCl2, State MG20-2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmd: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C18 and 100 uM MgCl2, State MG0.1-1A
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tme: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C18 and 100 uM MgCl2, State MG0.1-1B
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmf: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C18 and 100 uM MgCl2, State MG0.1-1C
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmg: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C18 and 100 uM MgCl2, State MG0.1-2A
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmh: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C18 and 100 uM MgCl2, State MG0.1-2B
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmi: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C18 and 100 uM MgCl2, State MG0.1-2C
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmj: Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C18 and 100 uM MgCl2, State MG0.1-2D
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmk: Cryo-EM structure of magnesium depleted CorA in complex with conformation-specific synthetic antibody C18, State MGD-2C
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tml: Cryo-EM structure of magnesium depleted CorA in complex with conformation-specific synthetic antibody C18, State MGD-2B
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmm: Cryo-EM structure of magnesium depleted CorA in complex with conformation-specific synthetic antibody C18, State MGD-2A
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmn: Cryo-EM structure of magnesium depleted CorA in complex with conformation-specific synthetic antibody C18, State MGD-1D
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmo: Cryo-EM structure of magnesium depleted CorA in complex with conformation-specific synthetic antibody C18, State MGD-1C
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmp: Cryo-EM structure of magnesium depleted CorA in complex with conformation-specific synthetic antibody C18, State MGD-1B
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmq: Cryo-EM structure of magnesium depleted CorA in complex with conformation-specific synthetic antibody C18, State MGD-1A
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-29
Authors: Erramilli, S.K., Perozo, E., Kossiakoff, A.A.
PDB entry 8tmr: Crystal structure of KPC-44 carbapenemase complexed with avibactam
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-07-30
Authors: Sun, Z., Palzkill, T., Hu, L., Lin, H., Sankaran, B., Wang, J., Prasad, B.
PDB entry 8tms: Crystal structure of bacterial pectin methylesterase PmeC2 from rumen Butyrivibrio
Classification: SUGAR BINDING PROTEIN
Source organism: Butyrivibrio fibrisolvens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-30
Authors: Carbone, V., Reilly, K., Sang, C., Schofield, L., Ronimus, R., Kelly, W.J., Attwood, G.T., Palevich, N.
PDB entry 8tmt: Crystal structure of KPC-44 carbapenemase in complex with vaborbactam
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-30
Authors: Sun, Z., Palzkill, T., Hu, L., Neetu, N., Lin, H., Sankaran, B., Wang, J., Prasad, B.
PDB entry 8tmu: HLA-B*73:01 bound to a 10mer peptide in complex with KIR2DL2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-07-31
Authors: Ross, P., Adams, E.
PDB entry 8tmv: HTLV-1 capsid protein N-terminal domain triclinic crystal form with phosphate ion
Classification: VIRAL PROTEIN
Source organism: HTLV-1 subtype C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-07-31
Authors: Yu, R.J., Li, N., Jacques, D.A.
PDB entry 8tmw: HTLV-1 capsid protein N-terminal domain triclinic crystal form with sulphate ion
Classification: VIRAL PROTEIN
Source organism: HTLV-1 subtype C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-07-31
Authors: Yu, R.J., Li, N., Jacques, D.A.
PDB entry 8tmx: Crystal structure of engineered Castilleja foliolosa KAI2d15 variant
Classification: HYDROLASE
Source organism: Castilleja foliolosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-31
Authors: Burger, M., Chory, J.
PDB entry 8tmy: Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with neutralizing antibody CHM-16
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2023-07-31
Authors: Feng, Z., Wilson, I.A.
PDB entry 8tmz: Crystal structure of MERS-CoV spike stem helix peptide in complex with neutralizing antibody CHM-27
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-31
Authors: Yuan, M., Wilson, I.A.
PDB entry 8tn0: Crystal structure of KPC-44 carbapenemase w/o cryoprotectant
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-07-31
Authors: Sun, Z., Palzkill, T., Hu, L., Lin, H., Sankaran, B., Wang, J., Prasad, B.
PDB entry 8tn1: De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - apo
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-08-01
Authors: Lu, L., DeGrado, W.F.
PDB entry 8tn2: Structure of S. hygroscopicus aminotransferase MppQ complexed with pyridoxal-5'-phosphate (PLP)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces hygroscopicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-08-01
Authors: Silvaggi, N.R., Vuksanovic, N.
PDB entry 8tn3: Structure of S. hygroscopicus aminotransferase MppQ complexed with pyridoxamine 5'-phosphate (PMP)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces hygroscopicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-08-01
Authors: Silvaggi, N.R., Vuksanovic, N.
PDB entry 8tn4: The Crystal Structure of a human monoclonal antibody (aAb), termed TG10, used to study poly-N-acetyl-glucosamine broadly expressed in biofilm-forming pathogenclonal antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-01
Authors: Li, M., Wlodawer, A., Temme, S., Gildersleeve, J.
PDB entry 8tn5: The Crystal Structure of a human monoclonal antibody (aAb), termed TG10, complexed with a GlcNH2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-08-01
Authors: Li, M., Wlodawer, A., Temme, S., Gildersleeve, J.
PDB entry 8tn6: De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo rucaparib
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-08-01
Authors: Lu, L., DeGrado, W.F.
PDB entry 8tn7: The Crystal Structure of a human monoclonal antibody (aAb), termed TG10, complexed with a disaccharide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-08-01
Authors: Li, M., Wlodawer, A., Temme, S., Gildersleeve, J.
PDB entry 8tn8: Crystal structure of the murine astrovirus capsid spike at 1.75 A
Classification: VIRAL PROTEIN
Source organism: Murine astrovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-08-01
Authors: Lanning, S., DuBois, R.M.
PDB entry 8tn9: Structural architecture of the acidic region of the B domain of coagulation factor V
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-08-01
Authors: Mohammed, B.M., Basore, K., Summers, B., Pelc, L.A., Di Cera, E.
PDB entry 8tnb: De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo mefuparib
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-01
Authors: Lu, L., DeGrado, W.F.
PDB entry 8tnc: De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo niraparib
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-01
Authors: Lu, L., DeGrado, W.F.
PDB entry 8tnd: De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo veliparib
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2023-08-01
Authors: Lu, L., DeGrado, W.F.
PDB entry 8tne: Crystal structure of bacterial pectin methylesterase Pme8A from rumen Butyrivibrio
Classification: SUGAR BINDING PROTEIN
Source organism: Butyrivibrio proteoclasticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-01
Authors: Carbone, V., Reilly, K., Sang, C., Schofield, L., Ronimus, R., Kelly, W.J., Attwood, G.T., Palevich, N.
PDB entry 8tnf: Crystal structure of sulfohexulose-1-phosphate aldolase from Paracoccus onubensis strain Merri
Classification: LYASE
Source organism: Paracoccus onubensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-01
Authors: Lee, M.
PDB entry 8tng: Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing llama nanobody R27 targeting the CD4-binding site
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-08-01
Authors: Zhou, T., Kwong, P.D., Xu, J.
PDB entry 8tnh: Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing llama nanobody G36 targeting the CD4-binding site
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-08-01
Authors: Zhou, T., Kwong, P.D., Xu, J.
PDB entry 8tni: Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with broadly neutralizing bi-specific antibody CAP256L-R27 targeting the CD4-binding site and the V2-apex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2023-08-01
Authors: Zhou, T., Morano, N.C., Roark, R.S., Kwong, P.D., Xu, J.
PDB entry 8tnj: Cryo-EM structure of HLA-B*73:01 bound to a 9mer peptide and two Fabs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-02
Authors: Ross, P., Adams, E.J., Lodwick, J., Zhao, M., Slezak, T., Kossiakoff, A.
PDB entry 8tnk: The crystal structure of the T252E mutant of CYP199A4 bound to 4-benzylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-08-02
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8tnl: CryoEM structure of H7 hemagglutinin from A/Shanghai2/2013 H7N9 in complex with a human neutralizing antibody H7.HK1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/Shanghai/02/2013(H7N9))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-08-02
Authors: Morano, N.C., Wu, X., Shapiro, L.
PDB entry 8tnm: UNC_079 from Chroma generative model
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-08-02
Authors: Ng-Thow-Hing, C., Van Vlack, E.R., Lord, D.M.
PDB entry 8tnn: Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with gp42 antibody A10
Classification: IMMUNE SYSTEM
Source organism: Human herpesvirus 4 strain B95-8; Macaca fascicularis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2023-08-02
Authors: Bu, W., Kumar, A., Board, N., Kim, J., Dowdell, K., Zhang, S., Lei, Y., Hostal, A., Krogmann, T., Wang, Y., Pittaluga, S., Marcotrigiano, J., Cohen, J.I.
PDB entry 8tno: UNC_239 from Chroma generative model
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2023-08-02
Authors: Ng-Thow-Hing, C., Van Vlack, E.R., Lord, D.M.
PDB entry 8tnp: Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Classification: TRANSFERASE
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-02
Authors: Roy Burman, S.S., Hunkeler, M., Fischer, E.S.
PDB entry 8tnq: Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Classification: TRANSFERASE
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2023-08-02
Authors: Roy Burman, S.S., Hunkeler, M., Fischer, E.S.
PDB entry 8tnr: Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2
Classification: TRANSFERASE
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-08-02
Authors: Roy Burman, S.S., Hunkeler, M., Fischer, E.S.
PDB entry 8tns: Solution structure of poly(UG) RNA (GU)12 G-quadruplex
Classification: RNA
Experimental method: SOLUTION NMR, SOLUTION SCATTERING
Deposited: 2023-08-02
Authors: Escobar, C.A., Petersen, R., Butcher, S.E.
PDB entry 8tnt: Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with antibodies F-2-1 and 769C2
Classification: IMMUNE SYSTEM
Source organism: Epstein-Barr virus; Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-08-02
Authors: Bu, W., Kumar, A., Board, N., Kim, J., Dowdell, K., Zhang, S., Lei, Y., Hostal, A., Krogmann, T., Wang, Y., Pittaluga, S., Marcotrigiano, J., Cohen, J.I.
PDB entry 8tnu: Cryo-EM structure of TRNM-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-08-02
Authors: Roark, R.S., Morano, N.C., Shapiro, L.S., Kwong, P.D.
PDB entry 8tnv: Hemocyanin Functional Unit CCHB-g of Concholepas concholepas
Classification: OXYGEN TRANSPORT
Source organism: Concholepas concholepas
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-08-02
Authors: Munoz, S., Vallejos-Baccelliere, G., Manubens, A., Salazar, M., Nascimento, A.F.Z., Ambrosio, A.L.B., Becker, M.I., Guixe, V., Castro-Fernandez, V.
PDB entry 8tnw: Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-08-02
Authors: Hu, W., Song, A.
PDB entry 8tnx: Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-08-02
Authors: Hu, W., Song, A.
PDB entry 8tny: Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2023-08-02
Authors: Hu, W., Song, A.
PDB entry 8to0: 48-nm repeating structure of doublets from mouse sperm flagella
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.7 Å
Deposited: 2023-08-02
Authors: Chen, Z., Shiozak, M., Hass, K.M., Skinner, W., Zhao, S., Guo, C., Polacco, B.J., Yu, Z., Krogan, N.J., Kaake, R.M., Vale, R.D., Agard, D.A.
PDB entry 8to1: Escherichia coli RNA polymerase unwinding intermediate (I1a) at the lambda PR promoter
Classification: transcription/DNA
Source organism: Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-02
Authors: Darst, S.A., Saecker, R.M., Mueller, A.U.
PDB entry 8to2: Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2023-08-02
Authors: Sauer, P.V., Sutter, M., Cupellini, L.
PDB entry 8to3: EGFR(T790M/V948R) in complex with LN5461
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-08-02
Authors: Chitnis, S.P., Pham, C.D., Heppner, D.E.
PDB entry 8to4: EGFR(T790M/V948R) in complex with the allosteric inhibitor FRF-06-057
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-08-02
Authors: Chitnis, S.P., Deng, M.Q., Pham, C.P., Heppner, D.E.
PDB entry 8to5: Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.87 Å
Deposited: 2023-08-02
Authors: Sauer, P.V., Sutter, M., Cupellini, L.
PDB entry 8to6: Escherichia coli RNA polymerase unwinding intermediate (I1d) at the lambda PR promoter
Classification: transcription/DNA
Source organism: Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-02
Authors: Darst, S.A., Saecker, R.M., Mueller, A.U.
PDB entry 8to7: Cryo-EM structure of HERH-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-08-03
Authors: Roark, R.S., Hoyt, F., Hansen, B., Fischer, E., Shapiro, L.S., Kwong, P.D.
PDB entry 8to8: Escherichia coli RNA polymerase unwinding intermediate (I1b) at the lambda PR promoter
Classification: transcription/DNA
Source organism: Escherichia coli (strain K12); Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-03
Authors: Darst, S.A., Saecker, R.M., Mueller, A.U.
PDB entry 8to9: Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.03 Å
Deposited: 2023-08-03
Authors: Roark, R.S., Morano, N.C., Shapiro, L.S., Kwong, P.D.