LiteFold/PDB huggingface dataset:
PDB entry 3vsx: Human renin in complex with compound 18
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-05-11
Authors: Takahashi, M., Hanzawa, H.
PDB entry 3vsy: High-resolution crystal structure of wild-type KSI in the apo form at neutral pH
Classification: ISOMERASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-05-16
Authors: Caaveiro, J.M.M., Kobe, A., Tsumoto, K.
PDB entry 3vsz: Crystal structure of Ct1,3Gal43A in complex with galactan
Classification: SUGAR BINDING PROTEIN
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.893 Å
Deposited: 2012-05-18
Authors: Jiang, D., Fan, J., Wang, X., Zhao, Y., Huang, B., Zhang, X.C.
PDB entry 3vt0: Crystal structure of Ct1,3Gal43A in complex with lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.913 Å
Deposited: 2012-05-18
Authors: Jiang, D., Fan, J., Wang, X., Zhao, Y., Huang, B., Zhang, X.C.
PDB entry 3vt1: Crystal structure of Ct1,3Gal43A in complex with galactose
Classification: SUGAR BINDING PROTEIN
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.187 Å
Deposited: 2012-05-18
Authors: Jiang, D., Fan, J., Wang, X., Zhao, Y., Huang, B., Zhang, X.C.
PDB entry 3vt2: Crystal structure of Ct1,3Gal43A in complex with isopropy-beta-D-thiogalactoside
Classification: SUGAR BINDING PROTEIN
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.002 Å
Deposited: 2012-05-18
Authors: Jiang, D., Fan, J., Wang, X., Zhao, Y., Huang, B., Zhang, X.C.
PDB entry 3vt3: Crystal structures of rat VDR-LBD with R270L mutation
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-05-19
Authors: Nakabayashi, M., Shimizu, M., Ikura, T., Ito, N.
PDB entry 3vt4: Crystal structures of rat VDR-LBD with R270L mutation
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-05-19
Authors: Nakabayashi, M., Shimizu, M., Ikura, T., Ito, N.
PDB entry 3vt5: Crystal structures of rat VDR-LBD with R270L mutation
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2012-05-19
Authors: Nakabayashi, M., Shimizu, M., Ikura, T., Ito, N.
PDB entry 3vt6: Crystal structure of rat VDR-LBD with 2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-05-19
Authors: Nakabayashi, M., Shimizu, M., Ikura, T., Ito, N.
PDB entry 3vt7: Crystal structures of rat VDR-LBD with W282R mutation
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2012-05-19
Authors: Nakabayashi, M., Shimizu, M., Ikura, T., Ito, N.
PDB entry 3vt8: Crystal structures of rat VDR-LBD with W282R mutation
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-05-19
Authors: Nakabayashi, M., Shimizu, M., Ikura, T., Ito, N.
PDB entry 3vt9: Crystal structures of rat VDR-LBD with W282R mutation
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2012-05-19
Authors: Nakabayashi, M., Shimizu, M., Ikura, T., Ito, N.
PDB entry 3vta: Crystal Structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L
Classification: HYDROLASE
Source organism: Cucumis melo
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2012-05-23
Authors: Murayama, K., Kato-Murayama, M., Hosaka, T., Sotokawauchi, A., Shirouzu, M., Arima, K., Yokoyama, S.
PDB entry 3vtb: Crystal structure of rat vitamin D receptor bound to a partial agonist 25-adamantyl-23-yne-19-norvitammin D ADTK1
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-05-26
Authors: Nakabayashi, M., Kudo, T., Tokiwa, H., Makishima, M., Yamada, S., Ikura, T., Ito, N.
PDB entry 3vtc: Crystal structure of rat vitamin D receptor bound to a partial agonist 26-adamantyl-23-yne-19-norvitammin D ADTK3
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-05-26
Authors: Nakabayashi, M., Kudo, T., Tokiwa, H., Makishima, M., Yamada, S., Ikura, T., Ito, N.
PDB entry 3vtd: Crystal structure of rat vitamin D receptor bound to a partial agonist 26-adamantyl-23-yne-19-norvitammin D ADTK4
Classification: HORMONE RECEPTOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-05-26
Authors: Nakabayashi, M., Kudo, T., Tokiwa, H., Makishima, M., Yamada, S., Ikura, T., Ito, N.
PDB entry 3vte: Crystal structure of tetrahydrocannabinolic acid synthase from Cannabis sativa
Classification: OXIDOREDUCTASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2012-05-28
Authors: Shoyama, Y., Tamada, T., Kurihara, K., Takeuchi, A., Taura, F., Arai, S., Blaber, M., Shoyama, Y., Morimoto, S., Kuroki, R.
PDB entry 3vtf: Structure of a UDP-glucose dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum
Classification: OXIDOREDUCTASE
Source organism: Pyrobaculum islandicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-05-29
Authors: Sakuraba, H., Ohshima, T., Yoneda, K.
PDB entry 3vtg: High choriolytic enzyme 1 (HCE-1), a hatching enzyme zinc-protease from Oryzias latipes (Medaka fish)
Classification: HYDROLASE
Source organism: Oryzias latipes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2012-05-30
Authors: Kudo, N., Yasumasu, S., Iuchi, I., Tanokura, M.
PDB entry 3vth: Crystal structure of full-length HypF in the phosphate- and nucleotide-bound form
Classification: TRANSFERASE
Source organism: Thermoanaerobacter tengcongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-05-30
Authors: Shomura, Y., Higuchi, Y.
PDB entry 3vti: Crystal structure of HypE-HypF complex
Classification: TRANSFERASE
Source organism: Thermoanaerobacter tengcongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2012-05-30
Authors: Shomura, Y., Higuchi, Y.
PDB entry 3vtj: Cytochrome P450SP alpha (CYP152B1) mutant A245H
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2012-05-30
Authors: Fujishiro, T., Shoji, O., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 3vtk: THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 IN COMPLEX WITH ADP AND 5-IODO-DEOXYURIDINE-MONOPHOSPHATE
Classification: TRANSFERASE
Source organism: Herpes simplex virus (type 1 / strain F)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1997-04-01
Authors: Wild, K., Schulz, G.E.
PDB entry 3vtm: Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin
Classification: HEME-BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-05-31
Authors: Vu, N.T., Caaveiro, J.M.M., Moriwaki, Y., Tsumoto, K.
PDB entry 3vtn: The crystal structure of the C-terminal domain of Mu phage central spike - Pt derivative for MAD
Classification: METAL BINDING PROTEIN
Source organism: Enterobacteria phage Mu
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2012-06-01
Authors: Harada, K., Yamashita, E., Nakagawa, A., Takeda, S.
PDB entry 3vto: The crystal structure of the C-terminal domain of Mu phage central spike
Classification: METAL BINDING PROTEIN
Source organism: Enterobacteria phage Mu
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2012-06-01
Authors: Harada, K., Yamashita, E., Nakagawa, A., Takeda, S.
PDB entry 3vtp: HIV fusion inhibitor MT-C34
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-06-02
Authors: Yao, X., Waltersperger, S., Wang, M., Cui, S.
PDB entry 3vtq: Novel HIV fusion inhibitor
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2012-06-02
Authors: Yao, X., Waltersperger, S., Wang, M., Cui, S.
PDB entry 3vtr: Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 E328A complexed with TMG-chitotriomycin
Classification: HYDROLASE/ANTIBIOTIC
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-06-02
Authors: Liu, T., Zhou, Y., Chen, L., Chen, W., Liu, L., Shen, X., Yang, Q.
PDB entry 3vts: Crystal structure of a three finger toxin from snake venom
Classification: TOXIN
Source organism: Hemachatus haemachatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.426 Å
Deposited: 2012-06-06
Authors: Jobichen, C., Sivaraman, J.
PDB entry 3vtt: High Resolution crystal structure of Dengue 3 Envelope protein domain III (ED3)
Classification: VIRAL PROTEIN, STRUCTURAL PROTEIN
Source organism: Dengue virus type 3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-06-07
Authors: Elahi, M., Islam, M.M., Kuroda, Y.
PDB entry 3vtu: Crystal structure of human LC3B_2-119
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-06-08
Authors: Suzuki, H., Kawasaki, M., Kato, R., Wakatsuki, S.
PDB entry 3vtv: Crystal structure of Optineurin LIR-fused human LC3B_2-119
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-06-08
Authors: Suzuki, H., Kawasaki, M., Kato, R., Wakatsuki, S.
PDB entry 3vtw: Crystal structure of T7-tagged Optineurin LIR-fused human LC3B_2-119
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2012-06-08
Authors: Suzuki, H., Kawasaki, M., Kato, R., Wakatsuki, S.
PDB entry 3vtx: Crystal structure of MamA protein
Classification: PROTEIN BINDING
Source organism: Candidatus Magnetobacterium bavaricum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2012-06-08
Authors: Zeytuni, N., Baran, D., Davidov, G., Zarivach, R.
PDB entry 3vty: Crystal structure of MamA
Classification: PROTEIN BINDING
Source organism: Candidatus Magnetobacterium bavaricum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-06-08
Authors: Zeytuni, N., Baran, D., Davidov, G., Zarivach, R.
PDB entry 3vtz: Structure of Thermoplasma volcanium aldohexose dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-06-12
Authors: Yasutake, Y., Nishioka, T., Tamura, T.
PDB entry 3vu0: Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AfAglB-S2, AF_0040, O30195_ARCFU) from Archaeoglobus fulgidus
Classification: TRANSFERASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2012-06-13
Authors: Nyirenda, J., Matsumoto, S., Saitoh, T., Maita, N., Noda, N.N., Inagaki, F., Kohda, D.
PDB entry 3vu1: Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PhAglB-L, O74088_PYRHO) from Pyrococcus horikoshii
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-06-13
Authors: Nyirenda, J., Matsumoto, S., Saitoh, T., Maita, N., Noda, N.N., Inagaki, F., Kohda, D.
PDB entry 3vu2: Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2012-06-14
Authors: Chaen, K., Kakuta, Y., Kimura, M.
PDB entry 3vu3: Crystal structure of the Hfq and catalase HPII complex
Classification: OXIDOREDUCTASE/RNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2012-06-15
Authors: Watanabe, M., Yonekura, K.
PDB entry 3vu4: Crystal structure of Kluyvelomyces marxianus Hsv2
Classification: PROTEIN TRANSPORT
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-06-15
Authors: Watanabe, Y., Noda, N.N.
PDB entry 3vu5: Short peptide HIV entry Inhibitor SC22EK
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.087 Å
Deposited: 2012-06-19
Authors: Yao, X., Chong, H.H., Waltersperger, S., Wang, M.T., He, Y.X., Cui, S.
PDB entry 3vu6: Short peptide HIV entry inhibitor MT-SC22EK with a M-T hook
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.324 Å
Deposited: 2012-06-19
Authors: Yao, X., Chong, H.H., Waltersperger, S., Wang, M.T., He, Y.X., Cui, S.
PDB entry 3vu7: Crystal structure of REV1-REV7-REV3 ternary complex
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-06-20
Authors: Kikuchi, S., Hara, K., Shimizu, T., Sato, M., Hashimoto, H.
PDB entry 3vu8: Metionyl-tRNA synthetase from Thermus thermophilus complexed with methionyl-adenylate analogue
Classification: LIGASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-06-22
Authors: Konno, M., Kato-Murayama, M., Toma-Fukai, S., Uchikawa, E., Nureki, O., Yokoyama, S.
PDB entry 3vu9: Crystal Structure of Psy3-Csm2 complex
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2012-06-23
Authors: Tawaramoto, M., Sasanuma, H., Hosaka, H., Lao, J.P., Sanda, E., Suzuki, M., Yamashita, E., Hunter, N., Shinohara, M., Nakagawa, A., Shinohara, A.
PDB entry 3vua: Apo IsdH-NEAT3 in space group P3121 at a resolution of 1.85 A
Classification: HEME-BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2012-06-26
Authors: Vu, N.T., Caaveiro, J.M.M., Moriwaki, Y., Tsumoto, K.
PDB entry 3vub: CCDB, A TOPOISOMERASE POISON FROM E. COLI
Classification: CCDB
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 1998-04-17
Authors: Loris, R., Dao-Thi, M.-H., Bahasi, E.M., Van Melderen, L., Poortmans, F., Liddington, R., Couturier, M., Wyns, L.
PDB entry 3vuc: Human renin in complex with compound 5
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-06-26
Authors: Takahashi, M., Matsui, Y., Hanzawa, H.
PDB entry 3vud: Crystal structure of a cysteine-deficient mutant M1 in MAP kinase JNK1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2012-06-28
Authors: Nakaniwa, T., Kinoshita, T., Inoue, T.
PDB entry 3vue: Crystal Structure of Rice Granule bound Starch Synthase I Catalytic Domain
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-06-28
Authors: Momma, M., Fujimoto, Z.
PDB entry 3vuf: Crystal Structure of Rice Granule bound Starch Synthase I Catalytic Domain in Complex with ADP
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2012-06-28
Authors: Momma, M., Fujimoto, Z.
PDB entry 3vug: Crystal structure of a cysteine-deficient mutant M2 in MAP kinase JNK1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2012-06-28
Authors: Nakaniwa, T., Kinoshita, T., Inoue, T.
PDB entry 3vuh: Crystal structure of a cysteine-deficient mutant M3 in MAP kinase JNK1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-06-28
Authors: Nakaniwa, T., Kinoshita, T., Inoue, T.
PDB entry 3vui: Crystal structure of a cysteine-deficient mutant M2 in MAP kinase JNK1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-06-28
Authors: Nakaniwa, T., Kinoshita, T., Inoue, T.
PDB entry 3vuk: Crystal structure of a cysteine-deficient mutant M5 in MAP kinase JNK1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2012-07-02
Authors: Nakaniwa, T., Kinoshita, T., Inoue, T.
PDB entry 3vul: Crystal structure of a cysteine-deficient mutant M1 in MAP kinase JNK1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2012-07-02
Authors: Nakaniwa, T., Kinoshita, T., Inoue, T.
PDB entry 3vum: Crystal structure of a cysteine-deficient mutant M7 in MAP kinase JNK1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2012-07-02
Authors: Nakaniwa, T., Kinoshita, T., Inoue, T.
PDB entry 3vun: Crystal structure of a influenza A virus (A/Aichi/2/1968 H3N2) hemagglutinin in C2 space group.
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2012-07-02
Authors: Yasutake, Y., Suzuki, T., Kawaguchi, A., Nobusawa, E.
PDB entry 3vuo: Crystal structure of nontoxic nonhemagglutinin subcomponent (NTNHA) from clostridium botulinum serotype D strain 4947
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2012-07-03
Authors: Sagane, Y., Miyashita, S.-I., Miyata, K., Matsumoto, T., Inui, K., Hayashi, S., Suzuki, T., Hasegawa, K., Yajima, S., Yamano, A., Niwa, K., Watanabe, T.
PDB entry 3vup: Beta-1,4-mannanase from the common sea hare Aplysia kurodai
Classification: HYDROLASE
Source organism: Aplysia kurodai
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2012-07-04
Authors: Mizutani, K., Tsuchiya, S., Toyoda, M., Nanbu, Y., Tominaga, K., Yuasa, K., Takahashi, N., Tsuji, A., Mikami, B.
PDB entry 3vuq: Crystal structure of TTHA0167, a transcriptional regulator, TetR/AcrR family from Thermus thermophilus HB8
Classification: TRANSCRIPTION REGULATOR
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2012-07-04
Authors: Agari, Y., Sakamoto, K., Agari, K., Kuramitsu, S., Shinkai, A.
PDB entry 3vur: Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathionesulfonic acid
Classification: TRANSFERASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.365 Å
Deposited: 2012-07-05
Authors: Yamamoto, K., Higashiura, A., Nakagawa, A., Suzuki, M.
PDB entry 3vus: Escherichia coli PgaB N-terminal domain
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2012-07-05
Authors: Nishiyama, T., Noguchi, H., Yoshida, H., Park, S.-Y., Tame, J.R.H.
PDB entry 3vut: Crystal structures of non-phosphorylated MAP2K4
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2012-07-05
Authors: Matsumoto, T., Kinoshita, T., Kirii, Y., Tada, T., Yamano, A.
PDB entry 3vuu: Crystal structure of the merozoite surface protein MSPDBL2 from P. falciparum
Classification: CELL ADHESION
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.093 Å
Deposited: 2012-07-09
Authors: Czabotar, P.E., Hodder, A.N., Clarke, O.B., Lin, C.S., Smith, B.J., Cowman, A.F.
PDB entry 3vuv: Crystal structure of the merozoite surface protein MSPDBL2 from P. falciparum bound to zinc
Classification: CELL ADHESION
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.114 Å
Deposited: 2012-07-09
Authors: Czabotar, P.E., Hodder, A.N., Clarke, O.B., Lin, C.S., Smith, B.J., Cowman, A.F.
PDB entry 3vuw: Crystal structure of A20 ZF7 in complex with linear ubiquitin, form I
Classification: PROTEIN BINDING/METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2012-07-09
Authors: Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 3vux: Crystal structure of A20 ZF7 in complex with linear ubiquitin, form II
Classification: PROTEIN BINDING/METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.699 Å
Deposited: 2012-07-09
Authors: Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 3vuy: Crystal structure of A20 ZF7 in complex with linear tetraubiquitin
Classification: PROTEIN BINDING/METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.981 Å
Deposited: 2012-07-09
Authors: Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 3vuz: Crystal structure of histone methyltransferase SET7/9 in complex with AAM-1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-07-10
Authors: Niwa, H., Handa, N., Tomabechi, Y., Honda, K., Toyama, M., Ohsawa, N., Shirouzu, M., Kagechika, H., Hirano, T., Umehara, T., Yokoyama, S.
PDB entry 3vv0: Crystal structure of histone methyltransferase SET7/9 in complex with DAAM-3
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2012-07-10
Authors: Niwa, H., Handa, N., Tomabechi, Y., Honda, K., Toyama, M., Ohsawa, N., Shirouzu, M., Kagechika, H., Hirano, T., Umehara, T., Yokoyama, S.
PDB entry 3vv1: Crystal Structure of Caenorhabditis elegans galectin LEC-6
Classification: SUGAR BINDING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-07-10
Authors: Makyio, H., Takeuchi, T., Tamura, M., Nishiyama, K., Takahashi, H., Natsugari, H., Arata, Y., Kasai, K., Yamada, Y., Wakatsuki, S., Kato, R.
PDB entry 3vv2: Crystal structure of complex form between S324A-subtilisin and mutant Tkpro
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2012-07-12
Authors: Uehara, R., Ueda, Y., You, D.J., Takano, K., Koga, Y., Kanaya, S.
PDB entry 3vv3: Crystal structure of deseasin MCP-01 from Pseudoalteromonas sp. SM9913
Classification: HYDROLASE
Source organism: Pseudoalteromonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2012-07-14
Authors: Zhao, G.Y., Gao, X., Chen, X.L., Zhang, Y.Z.
PDB entry 3vv4: Crystal structure of cyanobacteriochrome TePixJ GAF domain
Classification: SIGNALING PROTEIN
Source organism: Thermosynechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-07-14
Authors: Ishizuka, T., Narikawa, R., Muraki, N., Shiba, T., Kurisu, G., Ikeuchi, M.
PDB entry 3vv5: Crystal structure of TTC0807 complexed with (S)-2-aminoethyl-L-cysteine (AEC)
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-07-16
Authors: Tomita, T., Kanemaru, Y., Hasebe, F., Kuzuyama, T., Nishiyama, M.
PDB entry 3vv6: Crystal Structure of beta secetase in complex with 2-amino-3-methyl-6-((1S, 2R)-2-phenylcyclopropyl)pyrimidin-4(3H)-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2012-07-17
Authors: Yonezawa, S., Yamamoto, T., Yamakawa, H., Muto, C., Hosono, M., Hattori, K., Higashino, K., Sakagami, M., Togame, H., Tanaka, Y., Nakano, T., Takemoto, H., Arisawa, M., Shuto, S.
PDB entry 3vv7: Crystal Structure of beta secetase in complex with 2-amino-6-((1S,2R)-2-(3'-methoxybiphenyl-3-yl)cyclopropyl)-3-methylpyrimidin-4(3H)-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-07-17
Authors: Yonezawa, S., Yamamoto, T., Yamakawa, H., Muto, C., Hosono, M., Hattori, K., Higashino, K., Sakagami, M., Togame, H., Tanaka, Y., Nakano, T., Takemoto, H., Arisawa, M., Shuto, S.
PDB entry 3vv8: Crystal structure of beta secetase in complex with 2-amino-3-methyl-6-((1S,2R)-2-(3'-methylbiphenyl-4-yl)cyclopropyl)pyrimidin-4(3H)-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-07-17
Authors: Yonezawa, S., Yamamoto, T., Yamakawa, H., Muto, C., Hosono, M., Hattori, K., Higashino, K., Sakagami, M., Togame, H., Tanaka, Y., Nakano, T., Takemoto, H., Arisawa, M., Shuto, S.
PDB entry 3vv9: Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2012-07-17
Authors: Shiba, T., Kido, Y., Sakamoto, K., Inaoka, D.K., Tsuge, C., Tatsumi, R., Balogun, E.O., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Saimoto, H., Moore, A.L., Harada, S., Kita, K.
PDB entry 3vva: Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with ascofuranone derivative
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2012-07-17
Authors: Shiba, T., Kido, Y., Sakamoto, K., Inaoka, D.K., Tsuge, C., Tatsumi, R., Balogun, E.O., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Saimoto, H., Moore, A.L., Harada, S., Kita, K.
PDB entry 3vvb: Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE from Staphylococcus aureus in apo form
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-07-18
Authors: Miyafusa, T., Caaveiro, J.M., Tanaka, Y., Tsumoto, K.
PDB entry 3vvc: Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE , K126E, in apo form
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-07-18
Authors: Miyafusa, T., Caaveiro, J.M., Tanaka, Y., Tsumoto, K.
PDB entry 3vvd: Crystal structure of TTC0807 complexed with Ornithine
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2012-07-21
Authors: Tomita, T., Kanemaru, Y., Hasebe, F., Kuzuyama, T., Nishiyama, M.
PDB entry 3vve: Crystal structure of TTC0807 complexed with Lysine
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-07-21
Authors: Tomita, T., Kanemaru, Y., Hasebe, F., Kuzuyama, T., Nishiyama, M.
PDB entry 3vvf: Crystal structure of TTC0807 complexed with Arginine
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-07-21
Authors: Tomita, T., Kanemaru, Y., Hasebe, F., Kuzuyama, T., Nishiyama, M.
PDB entry 3vvg: The Crystal Structure of Cellulase-Inhibitor Complex.
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-07-24
Authors: Ishikawa, K., Maeno, Y., Kataoka, M.
PDB entry 3vvh: X-ray structure of the human mitogen-activated protein kinase kinase 1 (MEK1) in complex with an inhibitor and MgATP
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-07-24
Authors: Kudo, N., Kato, R., Wakatsuki, S.
PDB entry 3vvi: Crystal structure of the coiled-coil domain of the transient receptor potential channel from Gibberella zeae (TRPGz)
Classification: TRANSPORT PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2012-07-25
Authors: Ihara, M., Yamashita, A.
PDB entry 3vvk: An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin
Classification: MEMBRANE PROTEIN
Source organism: Natronomonas pharaonis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-07-26
Authors: Kouyama, T., Nakanishi, T.
PDB entry 3vvl: Crystal structure of L-serine-O-acetyltransferase found in D-cycloserine biosynthetic pathway
Classification: TRANSFERASE
Source organism: Streptomyces lavendulae subsp. lavendulae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2012-07-26
Authors: Oda, K., Matoba, Y., Kumagai, T., Noda, M., Sugiyama, M.
PDB entry 3vvm: Crystal structure of G52A-P55G mutant of L-serine-O-acetyltransferase found in D-cycloserine biosynthetic pathway
Classification: TRANSFERASE
Source organism: Streptomyces lavendulae subsp. lavendulae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-07-26
Authors: Oda, K., Matoba, Y., Kumagai, T., Noda, M., Sugiyama, M.
PDB entry 3vvn: Crystal structure of MATE in the straight conformation
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.398 Å
Deposited: 2012-07-27
Authors: Tanaka, Y., Ishitani, R., Nureki, O.
PDB entry 3vvo: Crystal structure of MATE in the bent conformation
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.504 Å
Deposited: 2012-07-27
Authors: Tanaka, Y., Ishitani, R., Nureki, O.
PDB entry 3vvp: Crystal structure of MATE in complex with Br-NRF
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2012-07-27
Authors: Tanaka, Y., Ishitani, R., Nureki, O.
PDB entry 3vvr: Crystal structure of MATE in complex with MaD5
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Pyrococcus furiosus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2012-07-27
Authors: Tanaka, Y., Ishitani, R., Nureki, O.
PDB entry 3vvs: Crystal structure of MATE in complex with MaD3S
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Pyrococcus furiosus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-07-27
Authors: Tanaka, Y., Ishitani, R., Nureki, O.
PDB entry 3vvt: Crystal structure of reconstructed archaeal ancestral NDK, Arc1
Classification: TRANSFERASE
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-07-27
Authors: Nemoto, N., Miyazono, K., Kimura, M., Yokobori, S., Akanuma, S., Tanokura, M., Yamagishi, A.
PDB entry 3vvu: Crystal structure of reconstructed bacterial ancestral NDK, Bac1
Classification: TRANSFERASE
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-07-27
Authors: Nemoto, N., Miyazono, K., Kimura, M., Yokobori, S., Akanuma, S., Tanokura, M., Yamagishi, A.
PDB entry 3vvv: Skich domain of NDP52
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2012-07-28
Authors: Akutsu, M., Muhlinen, N.V., Randow, F., Komander, D.
PDB entry 3vvw: NDP52 in complex with LC3C
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-07-28
Authors: Akutsu, M., Muhlinen, N.V., Randow, F., Komander, D.
PDB entry 3vvx: Crystal Strucuture of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Classification: TRANSCRIPTION REGULATOR
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2012-07-30
Authors: Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.
PDB entry 3vvy: Crystal Strucuture of The Ethidium-Bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Classification: TRANSCRIPTION REGULATOR
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2012-07-30
Authors: Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.
PDB entry 3vvz: Crystal Strucuture of The Rhodamine 6G-Bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Classification: TRANSCRIPTION REGULATOR
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2012-07-30
Authors: Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.
PDB entry 3vw0: Crystal Structure of The Dequalinum-bound Form of RamR (Transcriptional Regulator of TetR Family) From Salmonella Typhimurium
Classification: TRANSCRIPTION REGULATOR
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-07-30
Authors: Sakurai, K., Yamasaki, S., Nakashima, R., Nikaido, E., Yamaguchi, A., Nishino, K.
PDB entry 3vw1: Crystal Strucuture of the Crystal Violet-Bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Classification: TRANSCRIPTION REGULATOR
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2012-07-30
Authors: Sakurai, K., Yamasaki, S., Nakashima, R., Nikaido, E., Yamaguchi, A., Nishino, K.
PDB entry 3vw2: Crystal Strucuture of The Berberine-bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Classification: TRANSCRIPTION REGULATOR
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2012-07-30
Authors: Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.
PDB entry 3vw3: Antibody 64M-5 Fab in complex with a double-stranded DNA (6-4) photoproduct
Classification: IMMUNE SYSTEM/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-07-30
Authors: Yokoyama, H., Mizutani, R., Satow, Y.
PDB entry 3vw4: Crystal structure of the DNA-binding domain of ColE2-P9 Rep in complex with the replication origin
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-07-31
Authors: Itou, H., Yagura, M., Itoh, T., Shirakihara, Y.
PDB entry 3vw5: Crystal structure of sugar epimerase from ruminal bacterium
Classification: ISOMERASE
Source organism: Ruminococcus albus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-08-02
Authors: Fujiwara, T., Saburi, W., Tanaka, I., Yao, M.
PDB entry 3vw6: Crystal structure of human apoptosis signal-regulating kinase 1 (ASK1) with imidazopyridine inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-08-06
Authors: Terao, Y., Suzuki, H., Yoshikawa, M., Yashiro, H., Takekawa, S., Fujitani, Y., Okada, K., Inoue, Y., Yamamoto, Y., Nakagawa, H., Yao, S., Kawamoto, T., Uchikawa, O.
PDB entry 3vw7: Crystal structure of human protease-activated receptor 1 (PAR1) bound with antagonist vorapaxar at 2.2 angstrom
Classification: Signaling protein/antagonist
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-08-07
Authors: Zhang, C., Srinivasan, Y., Arlow, D.H., Fung, J.J., Palmer, D., Zheng, Y., Green, H.F., Pandey, A., Dror, R.O., Shaw, D.E., Weis, W.I., Coughlin, S.R., Kobilka, B.K.
PDB entry 3vw8: Crystal structure of human c-Met kinase domain with its inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-08-08
Authors: Matsumoto, S., Miyamoto, N., Hirayama, T., Oki, H., Okada, K., Tawada, M., Iwata, H., Miki, H., Nakamura, K., Hori, A., Imamura, S.
PDB entry 3vw9: Human Glyoxalase I with an N-hydroxypyridone inhibitor
Classification: LYASE/LYASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2012-08-10
Authors: Fukami, T.A., Irie, M., Matsuura, T.
PDB entry 3vwa: Crystal structure of Cex1p
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-08-13
Authors: Nozawa, K., Ishitani, R., Nureki, O.
PDB entry 3vwb: Crystal structure of VirB core domain (Se-Met derivative) complexed with the cis-acting site (5-BRU modifications) upstream icsb promoter
Classification: TRANSCRIPTION/DNA
Source organism: Shigella flexneri 2a; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.416 Å
Deposited: 2012-08-21
Authors: Gao, X.P., Waltersperger, S., Wang, M.T., Cui, S.
PDB entry 3vwc: High resolution structure of proteinase inhibitor from Coprinopsis cinerea
Classification: HYDROLASE INHIBITOR
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-08-22
Authors: Renko, M., Sabotic, J., Turk, D.
PDB entry 3vwd: Crystal structure of alpha-tubulin acetyltransferase domain of human Mec-17 in complex with acetoacetyl-CoA (P21212 form)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2012-08-22
Authors: Yuzawa, S., Sumimoto, H.
PDB entry 3vwe: Crystal structure of alpha-tubulin acetyltransferase domain of human Mec-17 in complex with CoA (P21 form)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.956 Å
Deposited: 2012-08-22
Authors: Yuzawa, S., Sumimoto, H.
PDB entry 3vwi: High resolution crystal structure of FraC in the monomeric form
Classification: TOXIN
Source organism: Actinia fragacea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-08-23
Authors: Tanaka, K., Morante, K., Caaveiro, J.M.M., Gonzalez-Manas, J.M., Tsumoto, K.
PDB entry 3vwj: Ternary crystal structure of the human NKT TCR-CD1d-C20:2 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.093 Å
Deposited: 2012-08-24
Authors: Wun, K.S., Rossjohn, J.
PDB entry 3vwk: Ternary crystal structure of the human NKT TCR-CD1d-4'deoxy-alpha-galactosylceramide complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.935 Å
Deposited: 2012-08-24
Authors: Wun, K.S., Rossjohn, J.
PDB entry 3vwl: Crystal structure of 6-aminohexanoate-dimer hydrolase G181D/R187S/H266N/D370Y mutant
Classification: HYDROLASE
Source organism: Flavobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-08-30
Authors: Kawashima, Y., Shibata, N., Negoro, S., Higuchi, Y.
PDB entry 3vwm: Crystal structure of 6-aminohexanoate-dimer hydrolase G181D/R187A/H266N/D370Y mutant
Classification: HYDROLASE
Source organism: Flavobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-08-30
Authors: Kawashima, Y., Shibata, N., Negoro, S., Higuchi, Y.
PDB entry 3vwn: Crystal structure of 6-aminohexanoate-dimer hydrolase G181D/R187G/H266N/D370Y mutant
Classification: HYDROLASE
Source organism: Flavobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2012-08-30
Authors: Kawashima, Y., Shibata, N., Negoro, S., Higuchi, Y.
PDB entry 3vwo: Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
Classification: HYDROLASE
Source organism: Sphingomonas sp. A1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.802 Å
Deposited: 2012-08-30
Authors: Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3vwp: Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/R187S/H266N/D370Y mutant complexd with 6-aminohexanoate
Classification: HYDROLASE
Source organism: Flavobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2012-08-30
Authors: Kawashima, Y., Shibata, N., Negoro, S., Higuchi, Y.
PDB entry 3vwq: 6-aminohexanoate-dimer hydrolase S112A/G181D/R187A/H266N/D370Y mutant complexd with 6-aminohexanoate
Classification: HYDROLASE
Source organism: Flavobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-08-30
Authors: Kawashima, Y., Shibata, N., Negoro, S., Higuchi, Y.
PDB entry 3vwr: Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/R187G/H266N/D370Y mutant complexd with 6-aminohexanoate
Classification: HYDROLASE
Source organism: Flavobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2012-08-30
Authors: Kawashima, Y., Shibata, N., Negoro, S., Higuchi, Y.
PDB entry 3vws: Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-107
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Dengue virus 3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-08-31
Authors: Noble, C.G., Lescar, J.
PDB entry 3vwu: Crystal structure of peroxiredoxin 4 from M. musculus
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2012-09-03
Authors: Inaba, K., Suzuki, M.
PDB entry 3vwv: crystal structure of N-terminally truncated peroxiredoxin 4 from M. musculus
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-09-03
Authors: Inaba, K., Suzuki, M.
PDB entry 3vww: Crystal structure of a0-domain of P5 from H. sapiens
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2012-09-03
Authors: Inaba, K., Suzuki, M.
PDB entry 3vwx: Structural analysis of an epsilon-class glutathione S-transferase from housefly, Musca domestica
Classification: TRANSFERASE
Source organism: Musca domestica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-09-05
Authors: Nakamura, C., Sue, M., Miyamoto, T., Yajima, S.
PDB entry 3vx0: Crystal Structure of alpha-amylase from Aspergillus oryzae
Classification: HYDROLASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-09-06
Authors: Sugahara, M.
PDB entry 3vx1: Crystal Structure of alpha-Amylase from Aspergillus oryzae
Classification: HYDROLASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-09-06
Authors: Sugahara, M.
PDB entry 3vx3: Crystal structure of [NiFe] hydrogenase maturation protein HypB from Thermococcus kodakarensis KOD1
Classification: ADP BINDING PROTEIN
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-09-09
Authors: Sasaki, D., Watanabe, S., Miki, K.
PDB entry 3vx4: Crystal Structure of the Nucleotide-Binding Domain of S. mutans ComA, a Bifunctional ATP-binding Cassette Transporter Involved in the Quorum-sensing Pathway
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2012-09-11
Authors: Ishii, S., Yano, T., Okamoto, A., Murakawa, T., Hayashi, H.
PDB entry 3vx6: Crystal structure of Kluyveromyces marxianus Atg7NTD
Classification: LIGASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-09-11
Authors: Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.
PDB entry 3vx7: Crystal structure of Kluyveromyces marxianus Atg7NTD-Atg10 complex
Classification: LIGASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2012-09-11
Authors: Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.
PDB entry 3vx8: Crystal structure of Arabidopsis thaliana Atg7NTD-Atg3 complex
Classification: LIGASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2012-09-11
Authors: Matoba, K., Fujioka, Y., Noda, N.N.
PDB entry 3vxb: Crystal Structure of BxlE from Streptomyces thermoviolaceus OPC-520
Classification: SUGAR BINDING PROTEIN
Source organism: Streptomyces thermoviolaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2012-09-11
Authors: Tomoo, K., Ishida, T., Miyamoto, K., Tsujibo, H.
PDB entry 3vxc: Crystal Structure of Xylobiose-BxlE complex from Streptomyces thermoviolaceus OPC-520
Classification: SUGAR BINDING PROTEIN
Source organism: Streptomyces thermoviolaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2012-09-11
Authors: Tomoo, K., Ishida, T., Miyamoto, K., Tsujibo, H.
PDB entry 3vxd: Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
Classification: HYDROLASE
Source organism: Streptococcus agalactiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-09-11
Authors: Nakamichi, Y., Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3vxe: Human alpha-thrombin-Bivalirudin complex at PD5.0
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2012-09-12
Authors: Yamada, T., Kurihara, K., Masumi, K., Tamada, T., Tomoyori, K., Ohnishi, Y., Tanaka, I., Kuroki, R., Niimura, N.
PDB entry 3vxf: X/N Joint refinement of Human alpha-thrombin-Bivalirudin complex PD5
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2012-09-12
Authors: Yamada, T., Kurihara, K., Masumi, K., Tamada, T., Tomoyori, K., Ohnishi, Y., Tanaka, I., Kuroki, R., Niimura, N.
PDB entry 3vxg: Crystal structure of conjugated polyketone reductase C2 from Candida Parapsilosis
Classification: OXIDOREDUCTASE
Source organism: Candida parapsilosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-09-13
Authors: Qin, H.-M., Yamamura, A., Miyakawa, T., Maruoka, S., Ohtsuka, J., Nagata, K., Kataoka, M., Shimizu, S., Tanokura, M.
PDB entry 3vxi: Dye-decolorizing peroxidase (DyP) complex with ascorbic acid
Classification: OXIDOREDUCTASE
Source organism: Bjerkandera adusta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-09-14
Authors: Sugano, Y., Yoshida, T., Tsuge, H.
PDB entry 3vxj: Dye-decolorizing peroxidase (DyP) complex with 2,6-dimethoxyphenol
Classification: OXIDOREDUCTASE
Source organism: Bjerkandera adusta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2012-09-14
Authors: Sugano, Y., Yoshida, T., Tsuge, H.
PDB entry 3vxk: Crystal structure of OsD14
Classification: HYDROLASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2012-09-18
Authors: Xue, Y.-L., Miyakawa, T., Hou, F., Qin, H.-M., Tanokura, M.