LiteFold/PDB huggingface dataset:
PDB entry 2d1q: Crystal structure of the thermostable Japanese Firefly Luciferase complexed with MgATP
Classification: OXIDOREDUCTASE
Source organism: Luciola cruciata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-08-31
Authors: Nakatsu, T., Ichiyama, S., Hiratake, J., Saldanha, A., Kobashi, N., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d1r: Crystal structure of the thermostable Japanese firefly Luciferase complexed with OXYLUCIFERIN and AMP
Classification: OXIDOREDUCTASE
Source organism: Luciola cruciata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-08-31
Authors: Nakatsu, T., Ichiyama, S., Hiratake, J., Saldanha, A., Kobashi, N., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d1s: Crystal structure of the thermostable Japanese Firefly Luciferase complexed with High-energy intermediate analogue
Classification: OXIDOREDUCTASE
Source organism: Luciola cruciata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2005-08-31
Authors: Nakatsu, T., Ichiyama, S., Hiratake, J., Saldanha, A., Kobashi, N., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d1t: Crystal structure of the thermostable Japanese Firefly Luciferase red-color emission S286N mutant complexed with High-energy intermediate analogue
Classification: OXIDOREDUCTASE
Source organism: Luciola cruciata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2005-08-31
Authors: Nakatsu, T., Ichiyama, S., Hiratake, J., Saldanha, A., Kobashi, N., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d1u: Solution structure of the periplasmic signaling domain of FecA from Escherichia coli
Classification: METAL TRANSPORT
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2005-09-01
Authors: Garcia-Herrero, A., Vogel, H.J.
PDB entry 2d1v: Crystal structure of DNA-binding domain of Bacillus subtilis YycF
Classification: TRANSCRIPTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-09-01
Authors: Okajima, T., Okada, A., Watanabe, T., Yamamoto, K., Tanizawa, K., Utsumi, R.
PDB entry 2d1w: Substrate Schiff-Base intermediate with tyramine in copper amine oxidase from Arthrobacter globiformis
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2005-09-01
Authors: Murakawa, T., Okajima, T., Kuroda, S., Nakamoto, T., Taki, M., Yamamoto, Y., Hayashi, H., Tanizawa, K.
PDB entry 2d1x: The crystal structure of the cortactin-SH3 domain and AMAP1-peptide complex
Classification: CELL INVASION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-09-01
Authors: Hashimoto, S., Hirose, M., Hashimoto, A., Morishige, M., Yamada, A., Hosaka, H., Akagi, K., Ogawa, E., Oneyama, C., Agatsuma, T., Okada, M., Kobayashi, H., Wada, H., Nakano, H., Ikegami, T., Nakagawa, A., Sabe, H.
PDB entry 2d1y: Crystal structure of TT0321 from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-09-02
Authors: Asada, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d1z: Crystal structure of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86
Classification: HYDROLASE
Source organism: Streptomyces olivaceoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-09-02
Authors: Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
PDB entry 2d20: Crystal structure of michaelis complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86
Classification: HYDROLASE
Source organism: Streptomyces olivaceoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-09-02
Authors: Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
PDB entry 2d21: NMR Structure of stereo-array isotope labelled (SAIL) maltodextrin-binding protein (MBP)
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2005-09-02
Authors: Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A.M., Guntert, P.
PDB entry 2d22: Crystal structure of covalent glycosyl-enzyme intermediate of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86
Classification: HYDROLASE
Source organism: Streptomyces olivaceoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-09-02
Authors: Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
PDB entry 2d23: Crystal structure of EP complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86
Classification: HYDROLASE
Source organism: Streptomyces olivaceoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2005-09-02
Authors: Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
PDB entry 2d24: Crystal structure of ES complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86
Classification: HYDROLASE
Source organism: Streptomyces olivaceoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-09-02
Authors: Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
PDB entry 2d25: C-C-A-G-G-C-M5C-T-G-G; HELICAL FINE STRUCTURE, HYDRATION, AND COMPARISON WITH C-C-A-G-G-C-C-T-G-G
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 1991-04-23
Authors: Heinemann, U., Hahn, M.
PDB entry 2d26: Active site distortion is sufficient for proteinase inhibit second crystal structure of covalent serpin-proteinase complex
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2005-09-03
Authors: Dementiev, A., Dobo, J., Gettins, P.G.
PDB entry 2d27: Structure of the N-terminal domain of XpsE (crystal form I4122)
Classification: PROTEIN TRANSPORT
Source organism: Xanthomonas campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2005-09-03
Authors: Chen, Y., Shiue, S.-J., Huang, C.-W., Chang, J.-L., Chien, Y.-L., Hu, N.-T., Chan, N.-L.
PDB entry 2d28: Structure of the N-terminal domain of XpsE (crystal form P43212)
Classification: PROTEIN TRANSPORT
Source organism: Xanthomonas campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-09-03
Authors: Chen, Y., Shiue, S.-J., Huang, C.-W., Chang, J.-L., Chien, Y.-L., Hu, N.-T., Chan, N.-L.
PDB entry 2d29: Structural study on project ID TT0172 from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-09-05
Authors: Shimizu, K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d2a: Crystal Structure of Escherichia coli SufA Involved in Biosynthesis of Iron-sulfur Clusters
Classification: METAL TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2005-09-05
Authors: Wada, K., Hasegawa, Y., Gong, Z., Minami, Y., Fukuyama, K., Takahashi, Y.
PDB entry 2d2c: Crystal Structure Of Cytochrome B6F Complex with DBMIB From M. Laminosus
Classification: PHOTOSYNTHESIS
Source organism: Mastigocladus laminosus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2005-09-07
Authors: Yan, J., Kurisu, G., Cramer, W.A.
PDB entry 2d2d: Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor I2
Classification: HYDROLASE
Source organism: SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2005-09-08
Authors: Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Ding, Y., Rao, Z.
PDB entry 2d2e: Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8
Classification: PROTEIN BINDING
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-09-08
Authors: Watanabe, S., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d2f: Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8
Classification: PROTEIN BINDING
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-09-08
Authors: Watanabe, S., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d2g: OpdA from Agrobacterium radiobacter with bound product dimethylthiophosphate
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-09-08
Authors: Jackson, C., Kim, H.K., Carr, P.D., Liu, J.W., Ollis, D.L.
PDB entry 2d2h: OpdA from Agrobacterium radiobacter with bound inhibitor trimethyl phosphate at 1.8 A resolution
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-09-09
Authors: Jackson, C., Kim, H.K., Carr, P.D., Liu, J.W., Ollis, D.L.
PDB entry 2d2i: Crystal Structure of NADP-Dependent Glyceraldehyde-3-Phosphate Dehydrogenase from Synechococcus Sp. complexed with Nadp+
Classification: OXIDOREDUCTASE
Source organism: Synechococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-09-09
Authors: Kitatani, T., Nakamura, Y., Wada, K., Kinoshita, T., Tamoi, M., Shigeoka, S., Tada, T.
PDB entry 2d2j: OpdA from Agrobacterium radiobacter without inhibitor/product present at 1.75 A resolution
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2005-09-09
Authors: Jackson, C., Kim, H.K., Carr, P.D., Liu, J.W., Ollis, D.L.
PDB entry 2d2k: Crystal Structure of a minimal, native (U39) all-RNA hairpin ribozyme
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2005-09-11
Authors: Alam, S., Grum-Tokars, V., Krucinska, J., Kundracik, M.L., Wedekind, J.E.
PDB entry 2d2l: Crystal Structure of a minimal, all-RNA hairpin ribozyme with a propyl linker (C3) at position U39
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-09-11
Authors: Alam, S., Grum-Tokars, V., Krucinska, J., Kundracik, M.L., Wedekind, J.E.
PDB entry 2d2m: Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Oligobrachia mashikoi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2005-09-12
Authors: Numoto, N., Nakagawa, T., Kita, A., Sasayama, Y., Fukumori, Y., Miki, K.
PDB entry 2d2n: Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Oligobrachia mashikoi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2005-09-12
Authors: Numoto, N., Nakagawa, T., Kita, A., Sasayama, Y., Fukumori, Y., Miki, K.
PDB entry 2d2o: Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft
Classification: HYDROLASE
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-09-13
Authors: Ohtaki, A., Mizuno, M., Yoshida, H., Tonozuka, T., Sakano, Y., Kamitori, S.
PDB entry 2d2p: The solution structure of micelle-bound peptide
Classification: HORMONE/GROWTH FACTOR
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-09-14
Authors: Tateishi, Y., Jee, J.G., Inooka, H., Tochio, H., Hiroaki, H., Shirakawa, M.
PDB entry 2d2q: Crystal structure of the dimerized radixin FERM domain
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-09-15
Authors: Kitano, K., Yusa, F., Hakoshima, T.
PDB entry 2d2r: Crystal structure of Helicobacter pylori Undecaprenyl Pyrophosphate Synthase
Classification: TRANSFERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2005-09-16
Authors: Kuo, C.J., Guo, R.T., Chen, C.L., Ko, T.P., Cheng, Y.S., Cheng, Y.L., Liang, P.H., Wang, A.H.-J.
PDB entry 2d2s: Crystal Structure of the Exo84p C-terminal Domains
Classification: ENDOCYTOSIS/EXOCYTOSIS
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2005-09-16
Authors: Dong, G., Hutagalung, A.H., Fu, C., Novick, P., Reinisch, K.M.
PDB entry 2d2v: X-ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp.PCC6803 in complex with maltose
Classification: HYDROLASE
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-09-16
Authors: Fieulaine, S., Lunn, J.E., Ferrer, J.-L.
PDB entry 2d2w: Solution structure and Dynamics of the DNA-Binding Domain of Myocyte Nuclear Factor
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2005-09-19
Authors: Chuang, W.-J., Chang, C.-H., Jeng, W.-Y., Chu, Y.-P.
PDB entry 2d2x: Crystal structure of 2-deoxy-scyllo-inosose synthase
Classification: LYASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-09-20
Authors: Nango, E., Kumasaka, T., Tanaka, N., Kakinuma, K., Eguchi, T.
PDB entry 2d2z: Crystal structure of Soluble Form Of CLIC4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-09-21
Authors: Li, Y.F., Li, D.F., Wang, D.C.
PDB entry 2d30: Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A Resolution
Classification: HYDROLASE
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-09-21
Authors: Levdikov, V.M., Blagova, E.V., Fogg, M.J., Brannigan, J.A., Moroz, O.V., Wilkinson, A.J., Wilson, K.S., Structural Proteomics in Europe (SPINE)
PDB entry 2d31: Crystal structure of disulfide-linked HLA-G dimer
Classification: IMMUNE SYSTEM/CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2005-09-23
Authors: Shiroishi, M., Kuroki, K., Ose, T., Rasubala, L., Shiratori, I., Arase, H., Tsumoto, K., Kumagai, I., Kohda, D., Maenaka, K.
PDB entry 2d32: Crystal Structure of Michaelis Complex of gamma-Glutamylcysteine Synthetase
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-09-25
Authors: Hibi, T., Nakayama, M., Nii, H., Kurokawa, Y., Katano, H., Oda, J.
PDB entry 2d33: Crystal Structure of gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2005-09-25
Authors: Hibi, T., Nakayama, M., Nii, H., Kurokawa, Y., Katano, H., Oda, J.
PDB entry 2d34: FORMALDEHYDE CROSS-LINKS DAUNORUBICIN AND DNA EFFICIENTLY: HPLC AND X-RAY DIFFRACTION STUDIES
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 1991-05-23
Authors: Wang, A.H.-J., Gao, Y.-G., Liaw, Y.-C., Li, Y.-K.
PDB entry 2d35: Solution structure of Cell Division Reactivation Factor, CedA
Classification: CELL CYCLE
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2005-09-26
Authors: Abe, Y., Watanabe, N., Matsuda, Y., Yoshida, Y., Katayama, T., Ueda, T.
PDB entry 2d36: The Crystal Structure of Flavin Reductase HpaC
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-09-26
Authors: Okai, M., Kudo, N., Lee, W.C., Kamo, M., Nagata, K., Tanokura, M.
PDB entry 2d37: The Crystal Structure of Flavin Reductase HpaC complexed with NAD+
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-09-26
Authors: Okai, M., Kudo, N., Lee, W.C., Kamo, M., Nagata, K., Tanokura, M.
PDB entry 2d38: The Crystal Structure of Flavin Reductase HpaC complexed with NADP+
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2005-09-26
Authors: Okai, M., Kudo, N., Lee, W.C., Kamo, M., Nagata, K., Tanokura, M.
PDB entry 2d39: Trivalent Recognition Unit of Innate Immunity System; Crystal Structure of human M-ficolin Fibrinogen-like Domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-09-26
Authors: Tanio, M., Kondo, S., Sugio, S., Kohno, T.
PDB entry 2d3a: Crystal Structure of the Maize Glutamine Synthetase complexed with ADP and Methionine sulfoximine Phosphate
Classification: LIGASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2005-09-26
Authors: Unno, H., Uchida, T., Sugawara, H., Kurisu, G., Sugiyama, T., Yamaya, T., Sakakibara, H., Hase, T., Kusunoki, M.
PDB entry 2d3b: Crystal Structure of the Maize Glutamine Synthetase complexed with AMPPNP and Methionine sulfoximine
Classification: LIGASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2005-09-26
Authors: Unno, H., Uchida, T., Sugawara, H., Kurisu, G., Sugiyama, T., Yamaya, T., Sakakibara, H., Hase, T., Kusunoki, M.
PDB entry 2d3c: Crystal Structure of the Maize Glutamine Synthetase complexed with ADP and Phosphinothricin Phosphate
Classification: LIGASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 3.81 Å
Deposited: 2005-09-26
Authors: Unno, H., Uchida, T., Sugawara, H., Kurisu, G., Sugiyama, T., Yamaya, T., Sakakibara, H., Hase, T., Kusunoki, M.
PDB entry 2d3d: crystal structure of the RNA binding SAM domain of saccharomyces cerevisiae Vts1
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-09-27
Authors: Aviv, T., Amborski, A.N., Zhao, X.S., Kwan, J.J., Johnson, P.E., Sicheri, F., Donaldson, L.W.
PDB entry 2d3e: Crystal structure of the C-Terminal fragment of rabbit skeletal alpha-tropomyosin
Classification: CONTRACTILE PROTEIN
Source organism: Oryctolagus cuniculus; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2005-09-27
Authors: Nitanai, Y., Maeda, K., Oda, N., Minakata, S., Maeda, Y.
PDB entry 2d3f: Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Pro-Hyp-Gly-(Pro-Pro-Gly)4
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2005-09-27
Authors: Wu, G., Noguchi, K., Okuyama, K., Ebisuzaki, S., Nishino, N.
PDB entry 2d3g: Double sided ubiquitin binding of Hrs-UIM
Classification: PROTEIN TRANSPORT
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-09-28
Authors: Hirano, S., Kawasaki, M., Kato, R., Wakatsuki, S.
PDB entry 2d3h: Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2005-09-28
Authors: Wu, G., Noguchi, K., Okuyama, K., Mizuno, K., Bachinger, H.P.
PDB entry 2d3i: Crystal Structure of Aluminum-Bound Ovotransferrin at 2.15 Angstrom Resolution
Classification: METAL TRANSPORT
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2005-09-28
Authors: Mizutani, K., Mikami, B., Aibara, S., Hirose, M.
PDB entry 2d3j: NMR structure of the WIF domain from human WIF-1
Classification: SIGNALING PROTEIN INHIBITOR
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-09-29
Authors: Liepinsh, E., Banyai, L., Patthy, L., Otting, G.
PDB entry 2d3k: Structural study on Project ID PH1539 from Pyrococcus horikoshii OT3
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-09-29
Authors: Shimizu, K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d3l: Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltopentaose.
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-09-29
Authors: Kanai, R., Haga, K., Akiba, T., Yamane, K., Harata, K.
PDB entry 2d3m: Pentaketide chromone synthase complexed with coenzyme A
Classification: TRANSFERASE
Source organism: Aloe arborescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-09-29
Authors: Morita, H., Kondo, S., Oguro, S., Noguchi, H., Sugio, S., Abe, I., Kohno, T.
PDB entry 2d3n: Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltohexaose
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-09-29
Authors: Kanai, R., Haga, K., Akiba, T., Yamane, K., Harata, K.
PDB entry 2d3o: Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans
Classification: RIBOSOME
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2005-09-30
Authors: Schluenzen, F., Wilson, D.N., Hansen, H.A., Tian, P., Harms, J.M., McInnes, S.J., Albrecht, R., Buerger, J., Wilbanks, S.M., Fucini, P.
PDB entry 2d3p: Cratylia Floribunda seed lectin crystallized at basic pH
Classification: SUGAR BINDING PROTEIN
Source organism: Cratylia argentea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-09-30
Authors: Del Sol, F.G., Cavada, B.S., Calvete, J.J.
PDB entry 2d3q: Crystal Structure of a Decolorizing Peroxidase (DyP) That Catalyses the Biological Oxidation of Anthraquinone Derivatives
Classification: OXIDOREDUCTASE
Source organism: Bjerkandera adusta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-09-30
Authors: Sato, T., Sugano, Y., Shoda, M.
PDB entry 2d3r: Cratylia folibunda seed lectin at acidic pH
Classification: SUGAR BINDING PROTEIN
Source organism: Cratylia argentea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2005-09-30
Authors: Del Sol, F.G., Cavada, B.S., Calvete, J.J.
PDB entry 2d3s: Crystal Structure of basic winged bean lectin with Tn-antigen
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2005-10-01
Authors: Kulkarni, K.A., Sinha, S., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2d3t: Fatty Acid beta-oxidation multienzyme complex from Pseudomonas Fragi, Form V
Classification: LYASE, OXIDOREDUCTASE/TRANSFERASE
Source organism: Pseudomonas fragi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2005-10-01
Authors: Tsuchiya, D., Shimizu, N., Ishikawa, M., Suzuki, Y., Morikawa, K.
PDB entry 2d3u: X-ray crystal structure of hepatitis C virus RNA dependent RNA polymerase in complex with non-nucleoside analogue inhibitor
Classification: TRANSFERASE
Source organism: Hepatitis C virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-10-02
Authors: Biswal, B.K., Wang, M., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bilimoria, D., Bedard, J., James, M.N.G.
PDB entry 2d3v: Crystal Structure of Leukocyte Ig-like Receptor A5 (LILRA5/LIR9/ILT11)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-10-03
Authors: Shiroishi, M., Kajikawa, M., Kuroki, K., Ose, T., Kohda, D., Maenaka, K.
PDB entry 2d3w: Crystal Structure of Escherichia coli SufC, an ATPase compenent of the SUF iron-sulfur cluster assembly machinery
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-10-03
Authors: Kitaoka, S., Wada, K., Hasegawa, Y., Minami, Y., Takahashi, Y., Fukuyama, K.
PDB entry 2d3y: Crystal structure of uracil-DNA glycosylase from Thermus Thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2005-10-04
Authors: Kosaka, H., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d3z: X-ray crystal structure of hepatitis C virus RNA-dependent RNA polymerase in complex with non-nucleoside analogue inhibitor
Classification: TRANSFERASE
Source organism: Hepatitis C virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-10-04
Authors: Biswal, B.K., Wang, M., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bilimoria, D., Bedard, J., James, M.N.G.
PDB entry 2d40: Crystal Structure of Z3393 from Escherichia coli O157:H7
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2005-10-05
Authors: Adams, M.A., Jia, Z., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
PDB entry 2d41: X-ray crystal structure of hepatitis C virus RNA-dependent RNA polymerase in complex with non-nucleoside inhibitor
Classification: TRANSFERASE
Source organism: Hepatitis C virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-10-05
Authors: Biswal, B.K., Wang, M., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bilimoria, D., Bedard, J., James, M.N.G.
PDB entry 2d42: Crystal structure analysis of a non-toxic crystal protein from Bacillus thuringiensis
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2005-10-05
Authors: Akiba, T., Higuchi, K., Mizuki, E., Ekino, K., Shin, T., Ohba, M., Kanai, R., Harata, K.
PDB entry 2d43: Crystal structure of arabinofuranosidase complexed with arabinotriose
Classification: HYDROLASE
Source organism: Aspergillus kawachii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-10-07
Authors: Miyanaga, A., Koseki, T., Miwa, Y., Matsuzawa, H., Wakagi, T., Shoun, H., Fushinobu, S.
PDB entry 2d44: Crystal structure of arabinofuranosidase complexed with arabinofuranosyl-alpha-1,2-xylobiose
Classification: HYDROLASE
Source organism: Aspergillus kawachii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-10-07
Authors: Miyanaga, A., Koseki, T., Miwa, Y., Matsuzawa, H., Wakagi, T., Shoun, H., Fushinobu, S.
PDB entry 2d45: Crystal structure of the MecI-mecA repressor-operator complex
Classification: Transcription/DNA
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2005-10-09
Authors: Safo, M.K., Ko, T.-P., Musayev, F.N., Zhao, Q., Wang, A.H.-J., Archer, G.L.
PDB entry 2d46: Solution Structure of the Human Beta4a-A Domain
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-10-10
Authors: Vendel, A.C., Rithner, C.D., Lyons, B.A., Horne, W.A.
PDB entry 2d47: MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1991-10-02
Authors: Verdaguer, N., Aymami, J., Fernandez-Forner, D., Fita, I., Coll, M., Huynh-Dinh, T., Igolen, J., Subirana, J.A.
PDB entry 2d48: Crystal structure of the Interleukin-4 variant T13D
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-10-11
Authors: Kraich, M., Klein, M., Patino, E., Harrer, H., Sebald, W., Mueller, T.D.
PDB entry 2d49: Solution structure of the Chitin-Binding Domain of Streptomyces griseus Chitinase C
Classification: HYDROLASE
Source organism: Streptomyces griseus
Experimental method: SOLUTION NMR
Deposited: 2005-10-11
Authors: Akagi, K., Watanabe, J., Hara, M., Kezuka, Y., Chikaishi, E., Yamaguchi, T., Akutsu, H., Nonaka, T., Watanabe, T., Ikegami, T.
PDB entry 2d4a: Structure of the malate dehydrogenase from Aeropyrum pernix
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2005-10-12
Authors: Kawakami, R., Sakuraba, H., Tsuge, H., Ohshima, T.
PDB entry 2d4c: Crystal structure of the endophilin BAR domain mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-10-13
Authors: Masuda, M., Takeda, S.
PDB entry 2d4d: The Crystal Structure of human beta2-microglobulin, L39W W60F W95F Mutant
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-10-17
Authors: Iwata, K., Matsuura, T., Nakagawa, A., Goto, Y.
PDB entry 2d4e: Crystal Structure of the HpcC from Thermus Thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-10-18
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d4f: The Crystal Structure of human beta2-microglobulin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-10-18
Authors: Iwata, K., Matsuura, T., Nakagawa, A., Goto, Y.
PDB entry 2d4g: Structure of YjcG protein, a putative 2'-5' RNA ligase from Bacillus subtilis
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-10-19
Authors: Li, D., Liang, Y.H., Su, X.D.
PDB entry 2d4h: Crystal-structure of the N-terminal large GTPase Domain of human Guanylate Binding protein 1 (hGBP1) in complex with GMP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2005-10-19
Authors: Ghosh, A., Praefcke, G.J.K., Renault, L., Wittinghofer, A., Herrmann, C.
PDB entry 2d4i: Monoclinic hen egg-white lysozyme crystallized at pH4.5 form heavy water solution
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2005-10-20
Authors: Harata, K., Akiba, T.
PDB entry 2d4j: Transformed monoclinic crystal of hen egg-white lysozyme from a heavy water solution
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2005-10-20
Authors: Harata, K., Akiba, T.
PDB entry 2d4k: Monoclinic hen egg-white lysozyme crystallized at 313K
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2005-10-20
Authors: Harata, K., Akiba, T.
PDB entry 2d4l: Crystal structure of truncated in C-terminal M-PMV dUTPase
Classification: HYDROLASE
Source organism: Mason-Pfizer monkey virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-10-20
Authors: Nemeth, V., Barabas, O., Vertessy, G.B.
PDB entry 2d4m: Crystal Structure of apo M-PMV dUTPase
Classification: HYDROLASE
Source organism: Mason-Pfizer monkey virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-10-20
Authors: Nemeth, V., Barabas, O., Vertessy, G.B.
PDB entry 2d4n: Crystal Structure of M-PMV dUTPase complexed with dUPNPP, substrate analogue
Classification: HYDROLASE
Source organism: Mason-Pfizer monkey virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2005-10-20
Authors: Nemeth, V., Barabas, O., Vertessy, G.B.
PDB entry 2d4o: Crystal structure of TTHA1254 (I68M mutant) from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-10-21
Authors: Mizohata, E., Uchikubo, T., Kinoshita, Y., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d4p: Crystal structure of TTHA1254 (wild type) from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-10-21
Authors: Mizohata, E., Uchikubo, T., Kinoshita, Y., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d4q: Crystal structure of the Sec-PH domain of the human neurofibromatosis type 1 protein
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-10-22
Authors: D'angelo, I., Welti, S., Bonneau, F., Scheffzek, K.
PDB entry 2d4r: Crystal structure of TTHA0849 from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-10-23
Authors: Nakabayashi, M., Shibata, N., Kuramitsu, S., Higuchi, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d4u: Crystal Structure of the ligand binding domain of the bacterial serine chemoreceptor Tsr
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2005-10-24
Authors: Imada, K., Tajima, H., Namba, K., Sakuma, M., Homma, M., Kawagishi, I.
PDB entry 2d4v: Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans
Classification: OXIDOREDUCTASE
Source organism: Acidithiobacillus thiooxidans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-10-24
Authors: Imada, K., Tamura, T., Namba, K., Inagaki, K.
PDB entry 2d4w: Crystal structure of glycerol kinase from Cellulomonas sp. NT3060
Classification: TRANSFERASE
Source organism: Cellulomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-10-24
Authors: Imada, K., Tamura, T., Namba, K., Inagaki, K.
PDB entry 2d4x: Crystal structure of a 26K fragment of HAP3 (FlgL)
Classification: STRUCTURAL PROTEIN
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-10-25
Authors: Imada, K., Matsunami, H., Samatey, A.F., Nagashima, S., Namba, K.
PDB entry 2d4y: Crystal structure of a 49K fragment of HAP1 (FlgK)
Classification: STRUCTURAL PROTEIN
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-10-25
Authors: Imada, K., Matsunami, H., Samatey, A.F., Nagashima, S., Namba, K.
PDB entry 2d4z: Crystal structure of the cytoplasmic domain of the chloride channel ClC-0
Classification: TRANSPORT PROTEIN
Source organism: Torpedo marmorata
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2005-10-26
Authors: Dutzler, R., Meyer, S.
PDB entry 2d51: Pentaketide chromone synthase (M207G mutant)
Classification: TRANSFERASE
Source organism: Aloe arborescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-10-27
Authors: Kohno, T., Morita, H.
PDB entry 2d52: Pentaketide chromone synthase (M207G mutant complexed with Coa)
Classification: TRANSFERASE
Source organism: Aloe arborescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-10-27
Authors: Kohno, T., Morita, H.
PDB entry 2d54: Crystal Structure of Methionyl tRNA Synthetase Y225A Mutant from Thermus Thermophilus
Classification: ISOMERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-10-28
Authors: Konno, M., Takeda, R., Takasaka, R., Mori, Y., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d55: Structural, physical and biological characteristics of RNA.DNA binding agent N8-actinomycin D
Classification: DNA/ANTIBIOTIC
Source organism: STREPTOMYCES ANTIBIOTICUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1995-05-01
Authors: Shinomiya, M., Chu, W., Carlson, R.G., Weaver, R.F., Takusagawa, F.
PDB entry 2d56: Solution Structure of ASABF, Antibacterial Peptide Isolated from a Nematode, Ascaris Suum
Classification: ANTIBIOTIC
Source organism: Ascaris suum
Experimental method: SOLUTION NMR
Deposited: 2005-10-28
Authors: Nakano, M., Aizawa, T., Kamiya, M., Miura, K., Kumaki, Y., Demura, M., Tsuda, S., Kawano, K.
PDB entry 2d57: Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.2 Å
Deposited: 2005-10-29
Authors: Hiroaki, Y., Tani, K., Kamegawa, A., Gyobu, N., Nishikawa, K., Suzuki, H., Walz, T., Sasaki, S., Mitsuoka, K., Kimura, K., Mizoguchi, A., Fujiyoshi, Y.
PDB entry 2d58: Human microglia-specific protein Iba1
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-10-31
Authors: Kamitori, S.
PDB entry 2d59: hypothetical protein from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-10-31
Authors: Hiyama, T.B., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d5a: hypothetical protein from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-10-31
Authors: Hiyama, T.B., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d5b: Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000
Classification: ISOMERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-10-31
Authors: Konno, M., Takeda, R., Takasaka, R., Mori, Y., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d5c: Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with shikimate
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-10-31
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d5d: Structure of Biotin Carboxyl Carrier Protein (74Val start) from Pyrococcus horikoshi OT3 Ligand Free Form II
Classification: LIPID BINDING PROTEIN,TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2005-11-01
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d5f: Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-11-01
Authors: Itoh, T., Adachi, M., Masuda, T., Mikami, B., Utsumi, S.
PDB entry 2d5g: Structure of ubiquitin fold protein R767E mutant
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2005-11-01
Authors: Shibata, N., Higuchi, Y.
PDB entry 2d5h: Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-11-01
Authors: Itoh, T., Adachi, M., Masuda, T., Mikami, B., Utsumi, S.
PDB entry 2d5i: The crystal structure of AzoR (Azo Reductase) from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-11-02
Authors: Ito, K., Tanokura, M.
PDB entry 2d5j: Unsaturated Glucuronyl Hydrolase Triggers Hydration of Vinyl Ether Group but not of Glycosidic Bond
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-11-02
Authors: Itoh, T., Hashimoto, W., Mikami, B., Murata, K.
PDB entry 2d5k: Crystal structure of Dps from Staphylococcus aureus
Classification: METAL BINDING PROTEIN
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-11-02
Authors: Tanaka, Y., Yao, M., Watanabe, N., Tanaka, I.
PDB entry 2d5l: Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-11-02
Authors: Nakajima, Y., Ito, K., Xu, Y., Yamada, N., Onohara, Y., Yoshimoto, T.
PDB entry 2d5m: Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2005-11-02
Authors: Ueda, Y., Shibata, N., Higuchi, Y.
PDB entry 2d5n: Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis
Classification: HYDROLASE, OXIDOREDUCTASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2005-11-02
Authors: Liaw, S.H., Chen, S.J., Chang, Y.C.
PDB entry 2d5r: Crystal Structure of a Tob-hCaf1 Complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-11-04
Authors: Horiuchi, M., Suzuki, N.N., Muroya, N., Takahasi, K., Nishida, M., Yoshida, Y., Ikematsu, N., Nakamura, T., Kawamura-Tsuzuku, J., Yamamoto, T., Inagaki, F.
PDB entry 2d5u: Solution structure of the N-terminal portion of the PUB domain of mouse peptide:N-glycanase
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2005-11-06
Authors: Sasakawa, H., Hirao, T., Yamaguchi, Y., Suzuki, T., Kato, K.
PDB entry 2d5v: Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter
Classification: TRANSCRIPTION/DNA
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-11-07
Authors: Iyaguchi, D., Yao, M., Watanabe, N., Nishihira, J., Tanaka, I.
PDB entry 2d5w: The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2005-11-07
Authors: Morita, A.
PDB entry 2d5x: Crystal structure of carbonmonoxy horse hemoglobin complexed with L35
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2005-11-08
Authors: Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.
PDB entry 2d5y: Aspartate Aminotransferase Mutant MC With Isovaleric Acid
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2005-11-08
Authors: Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
PDB entry 2d5z: Crystal structure of T-state human hemoglobin complexed with three L35 molecules
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2005-11-08
Authors: Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.
PDB entry 2d60: Crystal structure of deoxy human hemoglobin complexed with two L35 molecules
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-11-08
Authors: Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.
PDB entry 2d61: Aspartate Aminotransferase Mutant MA With Maleic Acid
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2005-11-08
Authors: Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
PDB entry 2d62: Crystal structure of multiple sugar binding transport ATP-binding protein
Classification: SUGAR BINDING PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-11-08
Authors: Lokanath, N.K., Mizohata, E., Yamaguchi-Sihta, E., Chen, L., Liu, Z.J., Wang, B.C., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d63: Aspartate Aminotransferase Mutant MA With Isovaleric Acid
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2005-11-09
Authors: Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
PDB entry 2d64: Aspartate Aminotransferase Mutant MABC With Isovaleric Acid
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2005-11-09
Authors: Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
PDB entry 2d65: Aspartate Aminotransferase Mutant MABC
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-11-09
Authors: Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
PDB entry 2d66: Aspartate Aminotransferase Mutant MAB
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2005-11-09
Authors: Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
PDB entry 2d68: Structure of the N-terminal domain of FOP (FGFR1OP) protein
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-11-10
Authors: Mikolajka, A.
PDB entry 2d69: Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal)
Classification: LYASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-11-10
Authors: Mizohata, E., Mishima, C., Akasaka, R., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d6b: Novel Bromate Species trapped within a Protein Crystal
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2005-11-10
Authors: Ondracek, J., Mesters, J.R.
PDB entry 2d6c: Crystal structure of myoglobin reconstituted with iron porphycene
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2005-11-11
Authors: Hayashi, T., Murata, D., Makino, M., Sugimoto, H., Matsuo, T., Sato, H., Shiro, Y., Hisaeda, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d6f: Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln)
Classification: ligase/RNA
Source organism: Methanothermobacter thermautotrophicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2005-11-13
Authors: Nureki, O.
PDB entry 2d6k: Crystal structure of mouse galectin-9 N-terminal CRD (crystal form 1)
Classification: SUGAR BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-11-14
Authors: Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.