LiteFold/PDB huggingface dataset:
PDB entry 8vgs: CABP-bound Decameric Rubisco from Candidatus Methanofastidiosum methylthiophilus
Classification: LYASE
Source organism: Candidatus Methanofastidiosum methylthiophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2023-12-27
Authors: Kaeser, B.P., Liu, A.K., Shih, P.M.
PDB entry 8vgt: Structure of the HKU1 RBD bound to the human TMPRSS2 receptor
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus HKU1 (isolate N1)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-12-27
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 8vgu: Crystal structure of BcTSPO/Hematin complex
Classification: MEMBRANE PROTEIN
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-12-28
Authors: Qiu, W., Guo, Y., Hendrickson, W.A.
PDB entry 8vgv: DH270.6 Fab bound to the HIV-1 CH848 DE3 SOSIP
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-29
Authors: Henderson, R., Acharya, P.
PDB entry 8vgw: VRC01 Fab bound to the HIV-1 CH848 DE3 SOSIP
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-29
Authors: Henderson, R., Acharya, P.
PDB entry 8vgx: Phosphate-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Classification: OXIDOREDUCTASE
Source organism: Corallina pilulifera
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2023-12-29
Authors: Hessefort, L.Z., Williams, D.R., Biegasiewicz, K.F.
PDB entry 8vgy: Crystal structure of human apoptosis-inducing factor (AIF) bound to the fused N-terminal domain of CHCHD4
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-29
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8vgz: Influenza PA-N Endonuclease E23K Mutant (amino acids 52-74 truncation)
Classification: HYDROLASE
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-12-30
Authors: Kohlbrand, A.J., Cohen, S.M.
PDB entry 8vh0: Vanadate-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Classification: OXIDOREDUCTASE
Source organism: Corallina pilulifera
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-12-30
Authors: Hessefort, L.Z., Williams, D.R., Biegasiewicz, K.F.
PDB entry 8vh1: CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.08 Å
Deposited: 2023-12-30
Authors: Henderson, R., Acharya, P.
PDB entry 8vh2: CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.31 Å
Deposited: 2023-12-30
Authors: Henderson, R., Acharya, P.
PDB entry 8vh3: CH505.M5.G458Y CE2 Design SOSIP
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-30
Authors: Henderson, R., Acharya, P.
PDB entry 8vh4: Cryo-EM structure of Rab12-LRRK2 complex in the LRRK2 monomer state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-12-30
Authors: Zhu, H., Sun, J.
PDB entry 8vh5: Cryo-EM structure of Rab12-LRRK2 complex in the LRRK2 dimer state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-30
Authors: Zhu, H., Sun, J.
PDB entry 8vh6: [F:3Au+:F] Metal-mediated DNA base pair with 2-thio-thymidine in tensegrity triangle
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.86 Å
Deposited: 2023-12-31
Authors: Vecchioni, S., Lu, B.
PDB entry 8vh7: Crystal structure of heparosan synthase 2 from Pasteurella multocida at 1.98 A
Classification: TRANSFERASE
Source organism: Pasteurella multocida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.982 Å
Deposited: 2023-12-31
Authors: Pedersen, L.C., Liu, J., Stancanelli, E., Krahn, J.M.
PDB entry 8vh8: Crystal structure of heparosan synthase 2 from Pasteurella multocida at 2.85 A
Classification: TRANSFERASE
Source organism: Pasteurella multocida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-12-31
Authors: Pedersen, L.C., Liu, J., Stancanelli, E., krahn, J.M.
PDB entry 8vh9: Crystal Structure of Human IDH1 R132Q in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2023-12-31
Authors: Mealka, M., Sohl, C.D., Huxford, T.
PDB entry 8vha: Crystal Structure of Human IDH1 R132Q in complex with NADPH and Alpha-Ketoglutarate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2023-12-31
Authors: Mealka, M., Sohl, C.D., Huxford, T.
PDB entry 8vhb: Crystal Structure of Human IDH1 R132Q in complex with NADPH and Alpha-Ketoglutarate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-12-31
Authors: Mealka, M., Sohl, C.D., Huxford, T.
PDB entry 8vhc: Crystal Structure of Human IDH1 R132Q in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-12-31
Authors: Mealka, M., Sohl, C.D., Huxford, T.
PDB entry 8vhd: Crystal Structure of Human IDH1 R132Q in complex with NADPH and Isocitrate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-12-31
Authors: Mealka, M., Sohl, C.D., Huxford, T.
PDB entry 8vhe: Crystal Structure of Human IDH1 R132Q in Complex with NADPH-TCEP Adduct
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-12-31
Authors: Mealka, M., Sohl, C.D., Huxford, T.
PDB entry 8vhf: Cryo-EM structure of GPR119-Gs-Nb35 complex with small molecule agonist MBX-2982
Classification: MEMBRANE PROTEIN/SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Lama glama; Oplophorus gracilirostris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-01-01
Authors: Kim, D.-G., Cherezov, V.
PDB entry 8vhg: Structure of the BMAL1/HIF2A heterodimer in Complex with DNA
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-01-01
Authors: Li, T., Tsai, K.L.
PDB entry 8vhh: Engineered holo tryptophan synthase (Tm9D8*) derived from T. maritima TrpB
Classification: LYASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-01-02
Authors: Porter, N.J., Johnston, K.E., Almhjell, P.J., Arnold, F.H.
PDB entry 8vhi: NPM2-H1.8 isolated from Xenopus egg extract
Classification: CHAPERONE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2024-01-02
Authors: Arimura, Y., Funabiki, H.
PDB entry 8vhj: NPM2-H1.8 isolated from Xenopus egg extract (Bent form)
Classification: CHAPERONE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2024-01-02
Authors: Arimura, Y., Funabiki, H.
PDB entry 8vhk: NPM2-H1.8 isolated from Xenopus egg extract (Stretched form)
Classification: CHAPERONE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.16 Å
Deposited: 2024-01-02
Authors: Arimura, Y., Funabiki, H.
PDB entry 8vhl: Structure of DHODH in Complex with Ligand 17
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-01-02
Authors: Shaffer, P.L.
PDB entry 8vhm: Structure of DHODH in Complex with Fragment 2
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-01-02
Authors: Shaffer, P.L.
PDB entry 8vhn: Crystal Structure of E. coli class Ia ribonucleotide reductase alpha subunit bound to two ATP molecules
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2024-01-02
Authors: Funk, M.A., Zimanyi, C.M., Drennan, C.L.
PDB entry 8vho: Crystal Structure of E. coli class Ia ribonucleotide reductase alpha subunit bound to dATP
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.548 Å
Deposited: 2024-01-02
Authors: Funk, M.A., Zimanyi, C.M., Drennan, C.L.
PDB entry 8vhp: Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to CDP and two molecules of ATP
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.608 Å
Deposited: 2024-01-02
Authors: Funk, M.A., Zimanyi, C.M., Drennan, C.L.
PDB entry 8vhq: Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to dATP and ATP
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-01-02
Authors: Funk, M.A., Zimanyi, C.M., Drennan, C.L.
PDB entry 8vhr: Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to dATP and GTP
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2024-01-02
Authors: Funk, M.A., Zimanyi, C.M., Drennan, C.L.
PDB entry 8vhs: X-ray Structure of a De Novo Designed Self Assembled Peptide Tetramer Featuring a Cu(His)4(H2O) Coordination Motif
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-01-02
Authors: Chakraborty, S., Mitra, S., Prakash, D., Prasad, P.
PDB entry 8vht: Cryo EM structure of a soybean CesA3 homotrimer
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-02
Authors: Ho, R., Palliniti, P., Zimmer, J.
PDB entry 8vhu: Crystal structure of dATP bound E. coli class Ia ribonucleotide reductase alpha construct fused with the C-terminal tail of E. coli class Ia beta subunit
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-01-02
Authors: Funk, M.A., Zimanyi, C.M., Drennan, C.L.
PDB entry 8vhv: Transmembrane AMPA Receptor Regulatory Protein Subunit Gamma 2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-01-02
Authors: Hale, W.D., Montano Romero, A., Huganir, R.L., Twomey, E.C.
PDB entry 8vhw: Neutron Structure of Peroxide-Soaked Trp161Phe MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: NEUTRON DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-02
Authors: Azadmanesh, J., Slobodnik, K., Struble, L.R., Lutz, W.E., Coates, L., Weiss, K.L., Myles, D.A.A., Kroll, T., Borgstahl, G.E.O.
PDB entry 8vhx: Cryo-EM of neck of bacteriophage Chi
Classification: VIRUS
Source organism: Chivirus chi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-02
Authors: Sonani, R.R., Esteves, N.C., Scharf, B.E., Egelman, E.H.
PDB entry 8vhy: Neutron Structure of Reduced Trp161Phe MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: NEUTRON DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-02
Authors: Azadmanesh, J., Slobodnik, K., Struble, L.R., Lutz, W.E., Coates, L., Weiss, K.L., Myles, D.A.A., Kroll, T., Borgstahl, G.E.O.
PDB entry 8vhz: Cryo EM structure of a soybean CesA1 homotrimer
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-02
Authors: Ho, R., Palliniti, P., Zimmer, J.
PDB entry 8vi0: Cryo EM structure of a soybean CesA6 homotrimer
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-02
Authors: Ho, R., Palliniti, P., Zimmer, J.
PDB entry 8vi1: Crystal structure of c-Met-D1228N in complex with KIN-7615
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2024-01-02
Authors: Ouyang, X., Kania, R., Cox, J.
PDB entry 8vi2: TehA from Haemophilus influenzae purified in DDM
Classification: MEMBRANE PROTEIN
Source organism: Haemophilus influenzae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-03
Authors: Catalano, C., Senko, S., Tran, N.L., Lucier, K.W., Farwell, A.C., Silva, M.S., Dip, P.V., Poweleit, N., Scapin, G.
PDB entry 8vi3: TehA from Haemophilus influenzae purified in GDN
Classification: MEMBRANE PROTEIN
Source organism: Haemophilus influenzae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-03
Authors: Catalano, C., Senko, S., Tran, N.L., Lucier, K.W., Farwell, A.C., Silva, M.S., Dip, P.V., Poweleit, N., Scapin, G.
PDB entry 8vi4: TehA from Haemophilus influenzae purified in LMNG
Classification: MEMBRANE PROTEIN
Source organism: Haemophilus influenzae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-03
Authors: Catalano, C., Senko, S., Tran, N.L., Lucier, K.W., Farwell, A.C., Silva, M.S., Dip, P.V., Poweleit, N., Scapin, G.
PDB entry 8vi5: TehA from Haemophilus influenzae purified in OG
Classification: MEMBRANE PROTEIN
Source organism: Haemophilus influenzae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-03
Authors: Catalano, C., Senko, S., Tran, N.L., Lucier, K.W., Farwell, A.C., Silva, M.S., Dip, P.V., Poweleit, N., Scapin, G.
PDB entry 8vi8: Engineered glutamine binding protein and a cobaloxime ligand - no GLN bound
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2024-01-03
Authors: Boggs, D.G., Fatima, S., Olshansky, L., Bridwell-Rabb, J.
PDB entry 8via: Protective effect of human non-neutralizing cross-reactive spike antibodies elicited by SARS-CoV-2 mRNA vaccination
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-01-03
Authors: Bajic, G.
PDB entry 8vib: CW Flagellar Switch Complex - FliF, FliG, FliM, and FliN forming single subunit of the C-ring from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-01-03
Authors: Singh, P.K., Iverson, T.M.
PDB entry 8vic: AP-6 bound human TMEM175
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2024-01-03
Authors: Oh, S., Hite, R.K.
PDB entry 8vid: CW Flagellar Switch Complex with extra density - FliF, FliG, FliM, and FliN forming single subunit of the C-ring from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2024-01-03
Authors: Singh, P.K., Iverson, T.M.
PDB entry 8vie: 2-PPA bound human TMEM175
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-01-04
Authors: Oh, S., Hite, R.K.
PDB entry 8vif: SARS-CoV-2 spike omicron (BA.1) ectodomain trimer in complex with SC27 Fab, local refinement
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-04
Authors: Byrne, P.O., McLellan, J.S.
PDB entry 8vig: EgtB-IV from Geminocystis sp. isolate SKYG4, an ergothioneine-biosynthetic type IV sulfoxide synthase in complex with hercynine
Classification: OXIDOREDUCTASE
Source organism: Geminocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-01-04
Authors: Ireland, K.A., Davis, K.M.
PDB entry 8vih: EgtB-IV from Crocosphaera subtropica, an ergothioneine-biosynthetic type IV sulfoxide synthase in complex with hercynine
Classification: OXIDOREDUCTASE
Source organism: Crocosphaera subtropica ATCC 51142
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-01-04
Authors: Ireland, K.A., Davis, K.M.
PDB entry 8vii: EgtB-IV from Crocosphaera subtropica, an ergothioneine-biosynthetic type IV sulfoxide synthase in complex with cysteine and hercynine
Classification: OXIDOREDUCTASE
Source organism: Crocosphaera subtropica ATCC 51142
Experimental method: X-RAY DIFFRACTION
Resolution: 1.621 Å
Deposited: 2024-01-04
Authors: Ireland, K.A., Davis, K.M.
PDB entry 8vij: Crystal structure of Shewanella benthica Group 1 truncated hemoglobin Y34F C51S C71S variant (cyanomet)
Classification: HEME-BINDING PROTEIN
Source organism: Shewanella benthica KT99
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-01-04
Authors: Lecomte, J.T.J., Schlessman, J.L., Martinez, J.E., Schultz, T.D., Siegler, M.A., DelCampo, M., Le Magueres, P.
PDB entry 8vik: EgtB-IV from Crocosphaera subtropica, a type IV sulfoxide synthase involved in ergothioneine biosynthesis
Classification: OXIDOREDUCTASE
Source organism: Crocosphaera subtropica ATCC 51142
Experimental method: X-RAY DIFFRACTION
Resolution: 1.961 Å
Deposited: 2024-01-04
Authors: Ireland, K.A., Davis, K.M.
PDB entry 8vil: EgtB-IV from Crocosphaera subtropica, an ergothioneine-biosynthetic type IV sulfoxide synthase in complex with N,N-dimethyl-histidine
Classification: OXIDOREDUCTASE
Source organism: Crocosphaera subtropica ATCC 51142
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-01-04
Authors: Ireland, K.A., Davis, K.M.
PDB entry 8vio: Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-01-05
Authors: Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8vip: Crystal structure of the N-terminal domain of fatty acid kinase A (FakA) from Staphylococcus aureus (Mn and AMP-PNP)
Classification: LIGASE
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-01-05
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Bose, J.L.
PDB entry 8viq: Crystal structure of the N-terminal domain of fatty acid kinase A (FakA) from Staphylococcus aureus (Mg and AMP-PNP)
Classification: LIGASE
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-01-05
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Bose, J.L.
PDB entry 8vir: Crystal structure of the N-terminal domain of fatty acid kinase A (FakA) from Staphylococcus aureus (Apo)
Classification: LIGASE
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-01-05
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Bose, J.L.
PDB entry 8vis: Human TMPRSS11D complexed with a disulfide-linked autoinhibitory DDDDK peptide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-01-05
Authors: Fraser, B.J., Dong, A., Ilyassov, O., Kenney, T., Li, Y.Y., Seitova, A., Li, Y., Hejazi, Z., Edwards, A., Benard, F., Arrowsmith, C.
PDB entry 8vit: Crystal structure of the N-terminal domain of fatty acid kinase A (FakA) from Staphylococcus aureus (Mg and ADP)
Classification: LIGASE
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-01-05
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Bose, J.L.
PDB entry 8viu: The DNA 16-mer sequence 5'-GCTGCGTTAACGCAGC-3' bound by a DB1992 stacked dimer
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-01-05
Authors: Terrell, J.R., Wilson, W.D.
PDB entry 8viv: Crystal structure of FBF-2 RBD in complex with gld-1 FBEa* RNA
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-01-05
Authors: Qiu, C., Hall, T.M.T.
PDB entry 8viw: Cryo-EM structure of heparosan synthase 2 from Pasteurella multocida with polysaccharide in the GlcNAc-T active site
Classification: TRANSFERASE
Source organism: Pasteurella multocida
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-05
Authors: Krahn, J.M., Pedersen, L.C., Liu, J., Stancanelli, E., Borgnia, M., Vivarette, E.
PDB entry 8vix: Hydrogen Peroxide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Classification: OXIDOREDUCTASE
Source organism: Corallina pilulifera
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2024-01-05
Authors: Hessefort, L.Z., Williams, D.R., Biegasiewicz, K.F.
PDB entry 8viy: 15-Lipoxygenase-2 V427L
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-01-05
Authors: Gilbert, N.C., Offenbacher, A.R., Ohler, A.R.L.
PDB entry 8viz: Structure of full-length gelsolin bound to the barbed end of F-actin
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2024-01-05
Authors: Barrie, K.R., Rebowski, G., Dominguez, R.
PDB entry 8vj0: Neutron Structure of Oxidized Trp161Phe MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: NEUTRON DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-05
Authors: Azadmanesh, J., Slobodnik, K., Struble, L.R., Lutz, W.E., Weiss, K.L., Myles, D.A.A., Kroll, T., Borgstahl, G.E.O.
PDB entry 8vj1: Structure of C-terminal domain of telomere resolvase, ResT, from Borrelia garinii
Classification: DNA BINDING PROTEIN
Source organism: Borreliella garinii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-01-05
Authors: Semper, C., Savchenko, A., Watanabe, N., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8vj2: Crystal Structure of Macrophage migration inhibitory factor-1 (MIF1) from Onchocerca volvulus
Classification: CYTOKINE
Source organism: Onchocerca volvulus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-01-05
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vj3: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (FAD bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-01-05
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vj4: X-ray Counterpart to the Neutron Structure of Peroxide-Soaked Trp161Phe MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-01-05
Authors: Azadmanesh, J., Slobodnik, K., Struble, L.R., Lutz, W.E., Weiss, K.L., Myles, D.A.A., Kroll, T., Borgstahl, G.E.O.
PDB entry 8vj5: Peroxide-Soaked MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-01-05
Authors: Azadmanesh, J., Slobodnik, K., Struble, L.R., Lutz, W.E., Weiss, K.L., Myles, D.A.A., Kroll, T., Borgstahl, G.E.O.
PDB entry 8vj6: GluA2 bound to GYKI-52466 and Glutamate, Inhibited State 1
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-01-05
Authors: Hale, W.D., Montano Romero, A., Huganir, R.L., Twomey, E.C.
PDB entry 8vj7: GluA2 bound to GYKI-52466 and Glutamate, Inhibited State 2
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.85 Å
Deposited: 2024-01-05
Authors: Hale, W.D., Montano Romero, A., Huganir, R.L., Twomey, E.C.
PDB entry 8vj8: X-ray Counterpart to Neutron Structure of Reduced Trp161Phe MnSOD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-01-05
Authors: Azadmanesh, J., Slobodnik, K., Struble, L.R., Lutz, W.E., Weiss, K.L., Myles, D.A.A., Kroll, T., Borgstahl, G.E.O.
PDB entry 8vj9: CryoEM structure of human ACKR3 phosphorylated by GRK5 in complex with Arrestin3 variant with the C edge loop from Arrestin2 inserted
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-06
Authors: Chen, Q., Tesmer, J.J.G.
PDB entry 8vja: Cryo-EM of tail of bacteriophage Chi
Classification: VIRUS
Source organism: Chivirus chi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-06
Authors: Sonani, R.R., Esteves, N.C., Scharf, B.E., Egelman, E.H.
PDB entry 8vjb: Cryo-EM structure of short form insulin receptor (IR-A) with four IGF2 bound, symmetric conformation.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-01-06
Authors: An, W., Hall, C., Li, J., Huang, A., Wu, J., Park, J., Bai, X.C., Choi, E.
PDB entry 8vjc: Cryo-EM structure of short form insulin receptor (IR-A) with three IGF2 bound, asymmetric conformation.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-01-06
Authors: An, W., Hall, C., Li, J., Huang, A., Wu, J., Park, J., Bai, X.C., Choi, E.
PDB entry 8vjd: Human R14A Pin1 covalently bound to inhibitor 158F10 in P21 21 21 space group
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-01-06
Authors: Rodriguez, I., Blaha, G.
PDB entry 8vje: Human R14A Pin1 covalently bound to inhibitor 158F10
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-01-06
Authors: Rodriguez, I., Blaha, G.
PDB entry 8vjf: Human R14A Pin1 covalently bound to inhibitor 158D9
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-01-06
Authors: Rodriguez, I., Blaha, G.
PDB entry 8vjg: Human R14A Pin1 covalently bound to inhibitor 164A10
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2024-01-06
Authors: Rodriguez, I., Blaha, G.
PDB entry 8vjh: Cryo-EM of tail-tip of bacteriophage Chi
Classification: VIRUS
Source organism: Chivirus chi
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-01-06
Authors: Sonani, R.R., Esteves, N.C., Scharf, B.E., Egelman, E.H.
PDB entry 8vji: Cryo-EM of capsid of bacteriophage Chi
Classification: VIRUS
Source organism: Chivirus chi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-06
Authors: Sonani, R.R., Esteves, N.C., Scharf, B.E., Egelman, E.H.
PDB entry 8vjj: Structure of mouse RyR1 (EGTA-only dataset)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-01-07
Authors: Weninger, G., Marks, A.R.
PDB entry 8vjk: Structure of mouse RyR1 (high-Ca2+/CFF/ATP dataset)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-01-07
Authors: Weninger, G., Marks, A.R.
PDB entry 8vjl: SpoIVFB:pro-sigmaK complex
Classification: MEMBRANE PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-01-07
Authors: Orlando, M.A., Pouillon, H.J.T., Mandal, S., Kroos, L., Orlando, B.J.
PDB entry 8vjm: SpoIVFB(E44Q variant):pro-sigmaK complex
Classification: MEMBRANE PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-01-07
Authors: Orlando, M.A., Pouillon, H.J.T., Mandal, S., Kroos, L., Orlando, B.J.
PDB entry 8vjn: Myxococcus xanthus encapsulin cargo protein EncD in complex with flavin mononucleotide
Classification: FLAVOPROTEIN
Source organism: Myxococcus xanthus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-01-07
Authors: Eren, E.
PDB entry 8vjo: Cryo-EM structure of Myxococcus xanthus EncA encapsulin shell loaded with EncD cargo
Classification: VIRUS LIKE PARTICLE
Source organism: Myxococcus xanthus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-01-07
Authors: Eren, E.
PDB entry 8vjp: Histidine-covalent stapled alpha-helical peptide (155H1) targeting hMcl-1
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2024-01-07
Authors: Muzzarelli, K.M., Assar, Z., Alboreggia, G., Pellecchia, M.
PDB entry 8vjq: Bromide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Classification: OXIDOREDUCTASE
Source organism: Corallina pilulifera
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-07
Authors: Hessefort, L.Z., Williams, D.R., Biegasiewicz, K.F.
PDB entry 8vjr: Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18, DTT-treated
Classification: VIRUS
Source organism: Tulane virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2024-01-07
Authors: Sun, C., Jiang, W.
PDB entry 8vjs: Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18 without DTT treatment
Classification: VIRUS
Source organism: Tulane virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-01-07
Authors: Sun, C., Jiang, W.
PDB entry 8vjt: Structure of the poly-UG quadruplex (GUGUGU)4
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.052 Å
Deposited: 2024-01-08
Authors: Bingman, C.A., Montemayor, E.J., Roschdi, S., Nomura, Y., Butcher, S.E.
PDB entry 8vju: Structure of Human Neurolysin in complex with dynorphin A13 peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-01-08
Authors: Shi, K., Aihara, H.
PDB entry 8vjv: Structure of Human Neurolysin in complex with dynorphin A8(1-8) peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-01-08
Authors: Shi, K., Aihara, H.
PDB entry 8vjw: Structure of Human Neurolysin in complex with angiotensin I peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.491 Å
Deposited: 2024-01-08
Authors: Shi, K., Aihara, H.
PDB entry 8vjx: Structure of Human Neurolysin in complex with bradykinin peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2024-01-08
Authors: Shi, K., Aihara, H.
PDB entry 8vjy: Structure of Human Neurolysin in complex with Neurotensin peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-01-08
Authors: Shi, K., Aihara, H.
PDB entry 8vjz: HLA-A*03:01 with WT KRAS-10mer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-01-08
Authors: Sim, M.J.W., Sun, P.D.
PDB entry 8vk0: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-01-08
Authors: Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8vk1: X-ray crystal structure of human IgE 4C8 Fab complex with Der p 2.0103
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Dermatophagoides pteronyssinus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2024-01-08
Authors: Khatri, K., Ball, A., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.
PDB entry 8vk2: X-ray crystal structure of human IgE 4C8 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.508 Å
Deposited: 2024-01-08
Authors: Khatri, K., Ball, A., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.
PDB entry 8vk3: Structure of mouse RyR1 in complex with S100A1 (EGTA-only dataset)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-01-08
Authors: Weninger, G., Marks, A.R.
PDB entry 8vk4: Structure of mouse RyR1 in complex with S100A1 (high-Ca2+/CFF/ATP dataset)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-01-08
Authors: Weninger, G., Marks, A.R.
PDB entry 8vk5: Human Sputum Leucocyte Elastase (uncomplexed)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2024-01-08
Authors: Xu, J., Rajasekaran, G., Li, S., Chen, L., Camarero, J.A.
PDB entry 8vk6: 14alpha-demethylase (CYP51) with amide-linked long arm extension antifungal azole inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Saccharomyces cerevisiae YJM789
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-01-08
Authors: Tyndall, J.D.A., Monk, B.C., Simons, C.
PDB entry 8vk7: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-01-08
Authors: Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8vk8: Structure of UbV.d2.1 in complex with Ube2d2
Classification: TRANSFERASE
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2024-01-08
Authors: Middleton, A.J.
PDB entry 8vk9: Structure of UbV.d2.3 in complex with Ube2d2-S22R
Classification: TRANSFERASE
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-08
Authors: Middleton, A.J.
PDB entry 8vka: Crystal structure of Plasmodium vivax glycylpeptide N-tetradecanoyltransferase (N-myristoyltransferase, NMT) bound to myristoyl-CoA and inhibitor 9c
Classification: TRANSFERASE
Source organism: Plasmodium vivax Sal-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-01-08
Authors: Fenwick, M.K., Staker, B.L., Phan, I.Q., Early, J., Myler, P.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vkb: Crystal structure of Plasmodium vivax glycylpeptide N-tetradecanoyltransferase (N-myristoyltransferase, NMT) bound to myristoyl-CoA and inhibitor 10b
Classification: TRANSFERASE
Source organism: Plasmodium vivax Sal-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-01-08
Authors: Fenwick, M.K., Staker, B.L., Phan, I.Q., Early, J., Myler, P.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vkc: Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrophenol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2024-01-08
Authors: Aktar, M.S., de Serrano, V.S., Ghiladi, R.A., Franzen, S.
PDB entry 8vkd: Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrocatechol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-01-08
Authors: Aktar, M.S., de Serrano, V.S., Ghiladi, R.A., Franzen, S.
PDB entry 8vke: SARS-CoV-2 spike omicron (BA.1) RBD ectodomain dimer-of-trimers in complex with SC27 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-09
Authors: Byrne, P.O., McLellan, J.S.
PDB entry 8vkf: The crystal structure of wild-type CYP199A4 bound to 4-propionylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-01-09
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8vkh: Structure of gelsolin domains G1G3 bound to the barbed end of F-actin
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2024-01-09
Authors: Barrie, K.R., Rebowski, G., Dominguez, R.
PDB entry 8vki: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-01-09
Authors: Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8vkj: Cryo-EM structure of human HGSNAT bound with Acetyl-CoA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-01-09
Authors: Li, F., Zhao, B.
PDB entry 8vkk: Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-01-09
Authors: Zhu, X., Mannar, D., Saville, J., Poloni, C., Bezeruk, A., Tidey, K., Ahmed, S., Tuttle, K., Vahdatihassani, F., Cholak, S., Cook, L., Steiner, T.S., Subramaniam, S.
PDB entry 8vkl: Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 2)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-01-09
Authors: Zhu, X., Mannar, D., Saville, J., Poloni, C., Bezeruk, A., Tidey, K., Ahmed, S., Tuttle, K., Vahdatihassani, F., Cholak, S., Cook, L., Steiner, T.S., Subramaniam, S.
PDB entry 8vkm: Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-01-09
Authors: Zhu, X., Mannar, D., Saville, J., Poloni, C., Bezeruk, A., Tidey, K., Ahmed, S., Tuttle, K., Vahdatihassani, F., Cholak, S., Cook, L., Steiner, T.S., Subramaniam, S.
PDB entry 8vkn: Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (focused refinement of RBD and mouse ACE2)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-01-09
Authors: Zhu, X., Mannar, D., Saville, J., Poloni, C., Bezeruk, A., Tidey, K., Ahmed, S., Tuttle, K., Vahdatihassani, F., Cholak, S., Cook, L., Steiner, T.S., Subramaniam, S.
PDB entry 8vko: Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with human ACE2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-01-09
Authors: Zhu, X., Mannar, D., Saville, J., Poloni, C., Bezeruk, A., Tidey, K., Ahmed, S., Tuttle, K., Vahdatihassani, F., Cholak, S., Cook, L., Steiner, T.S., Subramaniam, S.
PDB entry 8vkp: Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-01-09
Authors: Zhu, X., Mannar, D., Saville, J., Poloni, C., Bezeruk, A., Tidey, K., Ahmed, S., Tuttle, K., Vahdatihassani, F., Cholak, S., Cook, L., Steiner, T.S., Subramaniam, S.
PDB entry 8vkq: CW Flagellar Switch Complex - FliF, FliG, FliM, and FliN forming the C-ring from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-01-09
Authors: Singh, P.K., Iverson, T.M.
PDB entry 8vkr: CW Flagellar Switch Complex with extra density - FliF, FliG, FliM, and FliN forming the C-ring from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2024-01-09
Authors: Singh, P.K., Iverson, T.M.
PDB entry 8vkt: Crystallographic structure of dimetalated DapE from Enterococcus faecium
Classification: HYDROLASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.398 Å
Deposited: 2024-01-09
Authors: Gonzalez-Segura, L., Diaz-Vilchis, A., Terrazas-Lopez, M., Diaz-Sanchez, A.G.
PDB entry 8vku: Structure of VCP in complex with an ATPase activator (D2 domains only, hexameric form)
Classification: HYDROLASE/ACTIVATOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-01-09
Authors: Jones, N.H., Urnivicius, L., Kapoor, T.M.
PDB entry 8vkv: Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-01-10
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8vkw: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2024-01-10
Authors: Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8vkx: VX22 bound to GII.4 P domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2024-01-10
Authors: Olia, A.S., Park, J., Lindesmith, L.C., Kwong, P.D.
PDB entry 8vkz: Crystal structure of Glucocorticoid Receptor in complex with an inhibitor
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.133 Å
Deposited: 2024-01-10
Authors: Judge, R.A., Hobson, A.D.
PDB entry 8vl0: The crystal structure of wild-type CYP199A4 bound to 4-(2-oxopropyl)benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.837 Å
Deposited: 2024-01-11
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8vl1: Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2024-01-11
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8vl3: Solution NMR structure of de novo designed protein F3 parent
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2024-01-11
Authors: McShan, A.C., Simma, M.K.
PDB entry 8vl4: Solution NMR Structure of de novo design protein 312 parent
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2024-01-11
Authors: McShan, A.C., Simma, M.K.
PDB entry 8vl7: Co-crystal structure of human TREX1 in complex with an inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-01-11
Authors: Dehghani-Tafti, S., Dong, A., Li, Y., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L.
PDB entry 8vl8: Salmonella enterica Typhimurium taxis to serine and repellents (Tsr) ligand-binding domain with L-Ser, pH 7
Classification: SIGNALING PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-11
Authors: Glenn, S., Baylink, A.
PDB entry 8vl9: Crystal structure of EloBC-VHL-CDO1 complex bound to compound 8 molecular glue
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-11
Authors: Shu, W., Ma, X., Tutter, A., Buckley, D., Golosov, A., Michaud, G.
PDB entry 8vlb: Crystal structure of EloBC-VHL-CDO1 complex bound to compound 4 molecular glue
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-01-11
Authors: Shu, W., Ma, X., Tutter, A., Buckley, D., Golosov, A., Michaud, G.
PDB entry 8vlc: Crystal structure of Zn-dependent hydrolase from Salmonella typhimurium LT2
Classification: HYDROLASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-01-11
Authors: Chang, C., Maltseva, N., Endres, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases, Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8vld: Crystal structure of Ash1L PHD finger in complex with histone H3K4me2
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-01-11
Authors: Vann, K.R., Kutateladze, T.G.
PDB entry 8vle: Composite structure of human FASN with NADPH in State 1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-11
Authors: Schultz, K., Marmorstein, R.
PDB entry 8vlf: Crystal structure of Ash1L PHD finger in complex with histone H3K4me3
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2024-01-11
Authors: Vann, K.R., Kutateladze, T.G.
PDB entry 8vlg: Cryo-EM structure of human HGSNAT bound with Acetyl-CoA and substrate analog
Classification: MEMBRANE PROTEIN,TRANSFERASE/SUBSTRATE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-01-11
Authors: Li, F., Zhao, B.