LiteFold/PDB huggingface dataset:
PDB entry 6djr: Full-length human TRPC3 in GDN
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2018-05-26
Authors: Sierra-Valdez, F.J., Azumaya, C.M., Nakagawa, T., Cordero-Morales, J.F.
PDB entry 6djs: Hybrid model of TRPC3 in GDN
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2018-05-26
Authors: Sierra-Valdez, F.J., Azumaya, C.M., Nakagawa, T., Cordero-Morales, J.F.
PDB entry 6djt: Structure of TYW1 with a lysine-pyruvate adduct bound
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2018-05-26
Authors: Grell, T.A.J., Drennan, C.L.
PDB entry 6dju: Mtb ClpB in complex with ATPgammaS and casein, Conformer 1
Classification: CHAPERONE
Source organism: Bos taurus; Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2018-05-26
Authors: Yu, H.J., Li, H.L.
PDB entry 6djv: Mtb ClpB in complex with ATPgammaS and casein, Conformer 2
Classification: CHAPERONE
Source organism: Bos taurus; Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2018-05-26
Authors: Yu, H.J., Li, H.L.
PDB entry 6djw: Crystal Structure of pParkin (REP and RING2 deleted)-pUb-UbcH7 complex
Classification: TRANSFERASE
Source organism: Bactrocera dorsalis; Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.801 Å
Deposited: 2018-05-26
Authors: Sauve, V., Sung, G., Trempe, J.F., Gehring, K.
PDB entry 6djx: Crystal Structure of pParkin-pUb-UbcH7 complex
Classification: TRANSFERASE
Source organism: Bactrocera dorsalis; Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.801 Å
Deposited: 2018-05-27
Authors: Sauve, V., Sung, G., Trempe, J.F., Gehring, K.
PDB entry 6djy: Fako virus
Classification: VIRUS
Source organism: Fako virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2018-05-27
Authors: Kaelber, J.T., Jiang, W., Weaver, S.C., Auguste, A.J., Chiu, W.
PDB entry 6djz: Human sigma-1 receptor bound to haloperidol
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.084 Å
Deposited: 2018-05-28
Authors: Schmidt, H.R., Kruse, A.C.
PDB entry 6dk0: Human sigma-1 receptor bound to NE-100
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2018-05-28
Authors: Schmidt, H.R., Kruse, A.C.
PDB entry 6dk1: Human sigma-1 receptor bound to (+)-pentazocine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2018-05-28
Authors: Schmidt, H.R., Kruse, A.C.
PDB entry 6dk2: Bacteroidetes AC2a SusD-like
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroidetes bacterium AC2a
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2018-05-28
Authors: Koropatkin, N.M.
PDB entry 6dk3: HUMAN MITOCHONDRIAL SERINE HYDROXYMETHYLTRANSFERASe 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2018-05-28
Authors: Dong, A., Wu, H., Zeng, H., Loppnau, P., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)
PDB entry 6dk4: Crystal structure of Campylobacter jejuni peroxide stress regulator
Classification: METAL TRANSPORT
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2018-05-28
Authors: Sarvan, S., Brunzelle, J.S., Couture, J.F.
PDB entry 6dk5: The X-ray crystal structure of human endothelin-1, a polypeptide hormone regulator of blood pressure
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2018-05-28
Authors: McPherson, A.
PDB entry 6dk7: RetS histidine kinase region with cobalt
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2018-05-29
Authors: Mancl, J.M., Schubot, F.D.
PDB entry 6dk8: RetS kinase region without cobalt
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2018-05-29
Authors: Mancl, J.M., Schubot, F.D.
PDB entry 6dk9: Yeast Ddi2 Cyanamide Hydratase
Classification: LYASE
Source organism: Saccharomyces cerevisiae (strain YJM789)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2018-05-29
Authors: Moore, S.A., Xiao, W., Li, J.
PDB entry 6dka: Yeast Ddi2 Cyanamide Hydratase
Classification: LYASE
Source organism: Saccharomyces cerevisiae (strain YJM789)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.901 Å
Deposited: 2018-05-29
Authors: Moore, S.A., Xiao, W., Li, J.
PDB entry 6dkb: Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 10b.
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2018-05-29
Authors: Greasley, S.E., Johnson, E., Kraus, M.L., Cronin, C.N.
PDB entry 6dkc: Yeast Ddi2 Cyanamide Hydratase, T157V mutant, apo structure
Classification: LYASE
Source organism: Saccharomyces cerevisiae (strain YJM789)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2018-05-29
Authors: Moore, S.A., Xiao, W., Li, J.
PDB entry 6dkd: Yeast Ddi2 Cyanamide Hydratase
Classification: LYASE
Source organism: Saccharomyces cerevisiae (strain YJM789)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2018-05-29
Authors: Moore, S.A., Xiao, W., Li, J.
PDB entry 6dke: The X-ray crystal structure of Streptococcus pneumoniae Fatty Acid Kinase (Fak) B1 protein loaded with palmitic acid (C16:0) to 1.76 Angstrom resolution
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2018-05-29
Authors: Cuypers, M.G., Subramanian, C., White, S.W., Rock, C.O.
PDB entry 6dkf: Caseinolytic protease (ClpP) from Staphylococcus aureus mutant - V7A
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus str. Newman
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2018-05-29
Authors: Ripstein, Z.A., Vahidi, S., Kay, L.E., Rubinstein, J.L.
PDB entry 6dkg: Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 13b.
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2018-05-29
Authors: Greasley, S.E., Johnson, E., Kraus, M.L., Cronin, C.N.
PDB entry 6dkh: The crystal structure of L-idonate 5-dehydrogenase from Escherichia coli str. K-12 substr. MG1655
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.608 Å
Deposited: 2018-05-29
Authors: Tan, K., Evdokimova, E., McChesney, C., Savchenko, A., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6dki: Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 19.
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2018-05-29
Authors: Greasley, S.E., Johnson, E., Kraus, M.L., Cronin, C.N.
PDB entry 6dkj: human GIPR ECD and Fab complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2018-05-29
Authors: Min, X., Wang, Z.
PDB entry 6dkk: Structure of BoNT
Classification: TOXIN
Source organism: Clostridium botulinum A str. ATCC 19397
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2018-05-29
Authors: Lam, K., Jin, R.
PDB entry 6dkl: Crystal Structure of a Rationally Designed Six-Fold Symmetric DNA Scaffold
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.034 Å
Deposited: 2018-05-29
Authors: Simmons, C.R., Zhang, F., Yan, H.
PDB entry 6dkm: DHD131
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2018-05-29
Authors: Bick, M.J., Chen, Z., Baker, D.
PDB entry 6dkn: CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA DECAPPING NUCLEASE DXO1
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2018-05-30
Authors: Tong, L., Wang, V.Y.F.
PDB entry 6dko: Crystal structure of Mycobacterium tuberculosis malate synthase in complex with 2,6-F-phenyldiketoacid
Classification: LYASE/LYASE inhibitor
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.556 Å
Deposited: 2018-05-30
Authors: Krieger, I.V., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 6dkp: The complex among DMF5(alpha-D26Y, alpha-Y50A,beta-L98W) TCR, human Class I MHC HLA-A2 and MART-1(26-35)(A27L) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.966 Å
Deposited: 2018-05-30
Authors: Hellman, L.M., Singh, N.K.
PDB entry 6dkq: Crystal structure of the Shr Hemoglobin Interacting Domain 2
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2018-05-30
Authors: Macdonald, R., Cascio, D., Collazo, M.J., Clubb, R.T.
PDB entry 6dks: Structure of the Rbpj-SHARP-DNA Repressor Complex
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli O157:H7; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2018-05-30
Authors: Kovall, R.A., VanderWielen, B.D., Yuan, Z.
PDB entry 6dkt: Crystal structure of Arginase from Bacillus subtilis
Classification: METAL BINDING PROTEIN
Source organism: Bacillus subtilis (strain 168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2018-05-30
Authors: Lewis, M.C., Hollingsworth, S.A., Holden, J.K., Poulos, T.L.
PDB entry 6dku: Crystal structure of Myotis VP35 mutant of interferon inhibitory domain
Classification: UNKNOWN FUNCTION
Source organism: Myotis lucifugus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2018-05-30
Authors: Liu, H., Ginell, G.M., Keefe, L.J., Leung, D.W., Amarasinghe, G.K.
PDB entry 6dkv: Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 21 round 5
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2018-05-30
Authors: Jackson, C.J., Hong, N.-S., Carr, P.D.
PDB entry 6dkw: Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 3.
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2018-05-31
Authors: Greasley, S.E., Brown, D.
PDB entry 6dky: Crystal structure of ribifolin, an orbitide from Jatropha ribifolia
Classification: UNKNOWN FUNCTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.239 Å
Deposited: 2018-05-31
Authors: Wang, C.K., Ramalho, S.D., King, G.J., Craik, D.J.
PDB entry 6dkz: Racemic structure of ribifolin, an orbitide from Jatropha ribifolia
Classification: PLANT PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2018-05-31
Authors: Wang, C.K., King, G.J., Ramalho, S.D.
PDB entry 6dl0: Crystal structure of pohlianin C, an orbitide from Jatropha pohliana
Classification: PLANT PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2018-05-31
Authors: Wang, C.K., King, G.J., Ramalho, S.D.
PDB entry 6dl1: Racemic structure of jatrophidin, an orbitide from Jatropha curcas
Classification: PLANT PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.029 Å
Deposited: 2018-05-31
Authors: Wang, C.K., King, G.J., Ramalho, S.D.
PDB entry 6dl2: BRD4 bromodomain 1 in complex with HYB157
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2018-05-31
Authors: Meagher, J.L., Stuckey, J.A.
PDB entry 6dl4: Human Titin ZIg10
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2018-05-31
Authors: Wright, N.T.
PDB entry 6dl7: Human mitochondrial ClpP in complex with ONC201 (TIC10)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-05-31
Authors: Halgas, O., Zarabi, S.F., Schimmer, A., Pai, E.F.
PDB entry 6dl8: Crystal Structure of an influenza A hemagglutinin antibody Fab variant CH67:1203d4 chimera
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.805 Å
Deposited: 2018-05-31
Authors: Dong, J., Finn, J.A., Crowe, J.E.
PDB entry 6dl9: Crystal structure of Mycobacterium tuberculosis malate synthase in complex with 2,6-Cl-phenyldiketoacid
Classification: LYASE/LYASE inhibitor
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2018-05-31
Authors: Krieger, I.V., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 6dla: Crystal structures of an influenza A hemagglutinin antibody Fab CH65:7969d2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.004 Å
Deposited: 2018-05-31
Authors: Dong, J., Crowe, J.E., Finn, J.A.
PDB entry 6dlb: Crystal Structure of an influenza A hemagglutinin antibody Fab CH65:1203d4 chimera
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-05-31
Authors: Dong, J., Finn, J.A., Crowe, J.E.
PDB entry 6dlc: Designed protein DHD1:234_A, Designed protein DHD1:234_B
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.261 Å
Deposited: 2018-05-31
Authors: Bick, M.J., Chen, Z., Baker, D.
PDB entry 6dld: Crystal structure of IgLON5/NEGR1 heterodimer
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2018-06-01
Authors: Ranaivoson, F.M., Turk, L.S., Ozkan, E., Montelione, G.T., Comoletti, D.
PDB entry 6dle: Crystal structure of IgLON5 homodimer
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.994 Å
Deposited: 2018-06-01
Authors: Ranaivoson, F.M., Turk, L.S., Ozkan, E., Montelione, G.T., Comoletti, D.
PDB entry 6dlf: Crystal structure of NTRI homodimer
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.446 Å
Deposited: 2018-06-01
Authors: Ranaivoson, F.M., Turk, L.S., Ozkan, E., Montelione, G.T., Comoletti, D.
PDB entry 6dlg: Crystal structure of a SHIP1 surface entropy reduction mutant
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2018-06-01
Authors: Gardill, B.R., Cheung, S.T., Mui, A.L., Van Petegem, F.
PDB entry 6dlh: Endo-fucoidan hydrolase MfFcnA4 from glycoside hydrolase family 107
Classification: HYDROLASE
Source organism: Mariniflexile fucanivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-06-01
Authors: Vickers, C., Abe, K., Salama-Alber, O., Boraston, A.B.
PDB entry 6dli: Crystal structure of glutamate racemase from Thermus thermophilus in complex with Beta-chloro-D-alanine
Classification: ISOMERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2018-06-01
Authors: Cooling, G.T., Vance, N.R., Spies, M.A.
PDB entry 6dlj: Crystal structure of Mycobacterium tuberculosis malate synthase in complex with 2-Nitro-phenyldiketoacid
Classification: LYASE/LYASE inhibitor
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.604 Å
Deposited: 2018-06-01
Authors: Krieger, I.V., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 6dlk: Crystal structure of DNA polymerase III subunit beta from Rickettsia rickettsii
Classification: TRANSFERASE
Source organism: Rickettsia rickettsii (strain Sheila Smith)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-06-01
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6dll: 2.2 Angstrom Resolution Crystal Structure of P-Hydroxybenzoate Hydroxylase from Pseudomonas putida in Complex with FAD.
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-06-01
Authors: Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Grimshaw, S., Kwon, K., Anderson, W.F., Satchell, K.J.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6dlm: DHD127
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.753 Å
Deposited: 2018-06-01
Authors: Bick, M.J., Chen, Z., Baker, D.
PDB entry 6dln: Oligomeric Structure of the HIV gp41 MPER-TMD in Phospholipid Bilayers
Classification: MEMBRANE PROTEIN
Experimental method: SOLID-STATE NMR
Deposited: 2018-06-01
Authors: Kwon, B., Lee, M., Waring, A.J., Hong, M.
PDB entry 6dlo: Crystal structure of LRRK2 WD40 domain dimer
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2018-06-02
Authors: Zhang, P., Ru, H., Wang, L., Wu, H.
PDB entry 6dlp: Crystal structure of LRRK2 WD40 domain dimer
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2018-06-02
Authors: Zhang, P., Ru, H., Wang, L., Wu, H.
PDB entry 6dlq: PRPP Riboswitch bound to PRPP, manganese chloride soaked structure
Classification: RNA
Source organism: Syntrophothermus lipocalidus DSM 12680
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2018-06-02
Authors: Peselis, A., Serganov, A.
PDB entry 6dlr: PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure
Classification: RNA
Source organism: Syntrophothermus lipocalidus DSM 12680
Experimental method: X-RAY DIFFRACTION
Resolution: 2.656 Å
Deposited: 2018-06-02
Authors: Peselis, A., Serganov, A.
PDB entry 6dls: PRPP Riboswitch bound to PRPP, thallium acetate soaked structure
Classification: RNA
Source organism: Syntrophothermus lipocalidus DSM 12680
Experimental method: X-RAY DIFFRACTION
Resolution: 2.885 Å
Deposited: 2018-06-02
Authors: Peselis, A., Serganov, A.
PDB entry 6dlt: PRPP Riboswitch bound to PRPP, native structure
Classification: RNA
Source organism: Syntrophothermus lipocalidus DSM 12680
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2018-06-02
Authors: Peselis, A., Serganov, A.
PDB entry 6dlu: Cryo-EM of the GMPPCP-bound human dynamin-1 polymer assembled on the membrane in the constricted state
Classification: ENDOCYTOSIS, HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2018-06-02
Authors: Kong, L., Wang, H., Fang, S., Canagarajah, B., Kehr, A.D., Rice, W.J., Hinshaw, J.E.
PDB entry 6dlv: Cryo-EM of the GTP-bound human dynamin-1 polymer assembled on the membrane in the super constricted state
Classification: ENDOCYTOSIS, HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.1 Å
Deposited: 2018-06-02
Authors: Kong, L., Wang, H., Fang, S., Canagarajah, B., Kehr, A.D., Rice, W.J., Hinshaw, J.E.
PDB entry 6dlw: Complement component polyC9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2018-06-03
Authors: Dunstone, M.A., Spicer, B.A., Law, R.H.P.
PDB entry 6dlx: FtsY-NG domain bound to fragment 3.
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.848 Å
Deposited: 2018-06-04
Authors: Ataide, F.S., Faoro, C.
PDB entry 6dly: Crystal structure of DNA polymerase III subunit beta from Mycobacterium marinum in complex with a natural product
Classification: TRANSFERASE
Source organism: Mycobacterium marinum (strain ATCC BAA-535 / M); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2018-06-04
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6dlz: Open state GluA2 in complex with STZ after micelle signal subtraction
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2018-06-04
Authors: Twomey, E.C., Yelshanskaya, M.V., Vassilevski, A.A., Sobolevsky, A.I.
PDB entry 6dm0: Open state GluA2 in complex with STZ and blocked by IEM-1460, after micelle signal subtraction
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2018-06-04
Authors: Twomey, E.C., Yelshanskaya, M.V., Vassilevski, A.A., Sobolevsky, A.I.
PDB entry 6dm1: Open state GluA2 in complex with STZ and blocked by NASPM, after micelle signal subtraction
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2018-06-04
Authors: Twomey, E.C., Yelshanskaya, M.V., Vassilevski, A.A., Sobolevsky, A.I.
PDB entry 6dm3: Crystal structure of the SH2 domain from RavO (Lpg1129) from Legionella pneumophila, apoprotein
Classification: PROTEIN BINDING
Source organism: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2018-06-04
Authors: Stogios, P.J., Evdokimova, E., Di Leo, R., Kaneko, T., Li, S., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 6dm4: Crystal structure of the SH2 domain from RavO (Lpg1129) from Legionella pneumophila in complex with Homo sapiens Shc1 phospho-Tyr317 peptide
Classification: PROTEIN BINDING
Source organism: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2018-06-04
Authors: Stogios, P.J., Evdokimova, E., Di Leo, R., Kaneko, T., Li, S., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 6dm6: Structure of DNA polymerase III subunit beta from Rickettsia conorii in complex with a natural product
Classification: TRANSFERASE
Source organism: Rickettsia conorii (strain ATCC VR-613 / Malish 7); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2018-06-04
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6dm7: NMR structure for Sp1 transcription factor duplex 5'-d(GGGGCGGGG)
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2018-06-04
Authors: Davis, E.V., Hennig, M., Arya, D.P.
PDB entry 6dm8: Understanding the Species Selectivity of Myeloid cell leukemia-1 (Mcl-1) inhibitors
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Escherichia coli (strain K12); Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2018-06-04
Authors: Zhao, B.
PDB entry 6dm9: DHD15_extended
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2018-06-04
Authors: Bick, M.J., Chen, Z., Baker, D.
PDB entry 6dma: DHD15_closed
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.363 Å
Deposited: 2018-06-04
Authors: Bick, M.J., Chen, Z., Baker, D.
PDB entry 6dmb: Cryo-EM structure of human Ptch1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2018-06-04
Authors: Yan, N., Gong, X., Qian, H.W.
PDB entry 6dmc: ppGpp Riboswitch bound to ppGpp, native structure
Classification: RNA
Source organism: Sulfobacillus acidophilus DSM 10332
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-06-04
Authors: Peselis, A., Serganov, A.
PDB entry 6dmd: ppGpp Riboswitch bound to ppGpp, manganese chloride structure
Classification: RNA
Source organism: Sulfobacillus acidophilus DSM 10332
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2018-06-05
Authors: Peselis, A., Serganov, A.
PDB entry 6dme: ppGpp Riboswitch bound to ppGpp, thallium acetate structure
Classification: RNA
Source organism: Sulfobacillus acidophilus DSM 10332
Experimental method: X-RAY DIFFRACTION
Resolution: 2.702 Å
Deposited: 2018-06-05
Authors: Peselis, A., Serganov, A.
PDB entry 6dmf: Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A with cellohexaose
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-06-05
Authors: Koropatkin, N.M., Bahr, C.M.
PDB entry 6dmg: A multiconformer ligand model of EK6 bound to ERK2
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-06-05
Authors: Hudson, B.M., van Zundert, G.C.P., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.
PDB entry 6dmh: A multiconformer ligand model of acylenzyme intermediate of meropenem bound to an SFC-1 E166A mutant
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Serratia fonticola
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2018-06-05
Authors: Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.
PDB entry 6dmi: A multiconformer ligand model of 5T5 bound to BACE-1
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2018-06-05
Authors: Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.
PDB entry 6dmj: A multiconformer ligand model of inhibitor 53W bound to CREB binding protein bromodomain
Classification: transcription/transcription inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2018-06-05
Authors: Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.
PDB entry 6dmk: A multiconformer ligand model of an isoxazolyl-benzimidazole ligand bound to the bromodomain of human CREBBP
Classification: transcription/transcription inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2018-06-05
Authors: Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.
PDB entry 6dml: A multiconformer ligand model of 3,5 dimethylisoxaxole bound to the bromodomain of human BRD4
Classification: transcription/transcription inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2018-06-05
Authors: Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.
PDB entry 6dmm: Crystal structure of the G23A mutant of human alpha defensin HNP4.
Classification: ANTIMICROBIAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2018-06-05
Authors: Gohain, N., Tolbert, W.D., Pazgier, M.
PDB entry 6dmn: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked in 2 mM Ca2+ and 200 mM K+ at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2018-06-05
Authors: Samara, N.L., Yang, W.
PDB entry 6dmo: Cryo-EM structure of human Ptch1 with three mutations L282Q/T500F/P504L
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2018-06-05
Authors: Yan, N., Gong, X., Qian, H.W.
PDB entry 6dmp: De Novo Design of a Protein Heterodimer with Specificity Mediated by Hydrogen Bond Networks
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2018-06-05
Authors: Chen, Z., Flores-Solis, D., Sgourakis, N.G., Baker, D.
PDB entry 6dmq: Crystal structure of the T27A mutant of human alpha defensin HNP4.
Classification: ANTIMICROBIAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2018-06-05
Authors: Gohain, N., Tolbert, W.D., Pazgier, M.
PDB entry 6dmr: Lipid-bound full-length rbTRPV5
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2018-06-05
Authors: Hughes, T.E.T., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 6dms: Endo-fucoidan hydrolase MfFcnA4_H294Q from glycoside hydrolase family 107
Classification: HYDROLASE
Source organism: Mariniflexile fucanivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2018-06-05
Authors: Vickers, C., Abe, K., Salama-Alber, O., Boraston, A.B.
PDB entry 6dmu: PI(4,5)P2 bound full-length rbTRPV5
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2018-06-05
Authors: Hughes, T.E.T., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 6dmv: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked for 40 s in 2 mM Mg2+ and 200 mM K+ at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2018-06-05
Authors: Samara, N.L., Yang, W.
PDB entry 6dmw: Calmodulin-bound full-length rbTRPV5
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2018-06-05
Authors: Hughes, T.E.T., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 6dmx: HBZ56 in complex with KIX and c-Myb
Classification: TRANSCRIPTION
Source organism: Human T-lymphotropic virus 1; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2018-06-05
Authors: Yang, K., Wright, P.E., Stanfield, R.L.
PDB entry 6dmy: Cryo-EM structure of human Ptch1 and ShhN complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2018-06-05
Authors: Yan, N., Gong, X., Qian, H.W.
PDB entry 6dmz: Solution structure of ZmD32
Classification: ANTIFUNGAL PROTEIN
Source organism: Zea mays
Experimental method: SOLUTION NMR
Deposited: 2018-06-05
Authors: Harvey, P.J., Craik, D.J.
PDB entry 6dn0: Retrofitted antibodies with stabilizing mutations: Herceptin scFv mutant with VH K30D and VL S52D.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-06-05
Authors: Langley, D.B., Roome, B., Christ, D.
PDB entry 6dn1: CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.03 Å
Deposited: 2018-06-05
Authors: Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.
PDB entry 6dn2: CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2018-06-05
Authors: Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.
PDB entry 6dn3: CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2018-06-05
Authors: Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.
PDB entry 6dn4: Cronobacter sakazakii (Enterobacter sakazakii) Metallo-beta-lactamse HARLDQ motif
Classification: METAL BINDING PROTEIN
Source organism: Cronobacter sakazakii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2018-06-06
Authors: Monteiro Pedroso, M., Waite, D., Natasa, M., McGeary, R., Guddat, L., Hugenholtz, P., Schenk, G.
PDB entry 6dn5: SPRY domain-containing SOCS box protein 2 complexed with WDINNN(BAL) cyclic peptide inhibitor
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-06-06
Authors: Law, R.H.P., Caradoc-Davies, T.T., Norton, R.S.
PDB entry 6dn6: SPRY domain-containing SOCS box protein 2 complexed with INNN(ABU) cyclic peptide inhibitor
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2018-06-06
Authors: Law, R.H.P., Caradoc-Davies, T.T., Norton, R.S.
PDB entry 6dn7: SPRY domain-containing SOCS box protein 2 complexed with WDINNN(BAL) Cyclic peptide inhibitor
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2018-06-06
Authors: Law, R.H.P., Caradoc-Davies, T.T., Norton, R.S.
PDB entry 6dn8: SPRY domain-containing SOCS box protein 2 complexed with (GZJ)VDINNN(CY3) Cyclic peptide inhibitor
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2018-06-06
Authors: Law, R.H.P., Caradoc-Davies, T.T., Norton, R.S.
PDB entry 6dna: Crystal structure of T110A mutant human Glutamate oxaloacetate transaminase 1 (GOT1)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2018-06-06
Authors: Assar, Z., Holt, M.C., Stein, A.J., Lairson, L., Lyssiotis, C.A.
PDB entry 6dnb: Crystal structure of T110A:S256A mutant human Glutamate oxaloacetate transaminase 1 (GOT1)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2018-06-06
Authors: Assar, Z., Holt, M.C., Stein, A.J., Lairson, L., Lyssiotis, C.A.
PDB entry 6dnc: E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2018-06-06
Authors: Svidritskiy, E., Demo, G., Korostelev, A.A.
PDB entry 6dnd: Crystal structure of wild-type (WT) human Glutamate oxaloacetate transaminase 1 (GOT1)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2018-06-06
Authors: Assar, Z., Holt, M.C., Stein, A.J., Lairson, L., Lyssiotis, C.A.
PDB entry 6dne: Crystal structure of human Bromodomain-containing protein 4 (BRD4) bromodomain with MS660
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.958 Å
Deposited: 2018-06-06
Authors: Ren, C., Zhou, M.M.
PDB entry 6dnf: Cryo-EM structure of the mitochondrial calcium uniporter MCU from the fungus Cyphellophora europaea
Classification: MEMBRANE PROTEIN
Source organism: Cyphellophora europaea CBS 101466
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2018-06-06
Authors: Long, S.B., Baradaran, R., Wang, C.
PDB entry 6dnh: Cryo-EM structure of human CPSF-160-WDR33-CPSF-30-PAS RNA complex at 3.4 A resolution
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2018-06-06
Authors: Sun, Y., Zhang, Y., Hamilton, K., Walz, T., Tong, L.
PDB entry 6dnj: Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 28 round 5
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2018-06-06
Authors: Jackson, C.J., Hong, N.-S., Carr, P.D.
PDB entry 6dnk: Human Stimulator of Interferon Genes
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2018-06-06
Authors: Fernandez, D., Li, L., Ergun, S.L.
PDB entry 6dnl: Crystal Structure of Neisseria meningitidis DsbD c-terminal domain in the reduced form
Classification: OXIDOREDUCTASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2018-06-06
Authors: Smith, R.P., Heras, B., Paxman, J.J.
PDB entry 6dnm: The crystal structure of SatS c-terminal domain
Classification: CHAPERONE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.397 Å
Deposited: 2018-06-07
Authors: Hughes, R.C., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 6dno: Crystal structure of Protein Phosphatase 1 (PP1) bound to the muscle glycogen-targeting subunit (Gm)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2018-06-07
Authors: Choy, M.S., Kumar, G.S., Peti, W., Page, R.
PDB entry 6dnp: Crystal structure of Mycobacterium tuberculosis malate synthase in complex with 2-F-3-Methyl-6-F-phenyldiketoacid
Classification: LYASE/LYASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.711 Å
Deposited: 2018-06-07
Authors: Krieger, I.V., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC), Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)
PDB entry 6dnq: HBZ77 in complex with KIX and c-Myb
Classification: TRANSCRIPTION
Source organism: Human T-lymphotropic virus 1; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2018-06-07
Authors: Yang, K., Wright, P.E., Stanfield, R.L.
PDB entry 6dnr: PRPP Riboswitch bound to PRPP, ligand-free structure
Classification: RNA
Source organism: Syntrophothermus lipocalidus DSM 12680
Experimental method: X-RAY DIFFRACTION
Resolution: 2.896 Å
Deposited: 2018-06-07
Authors: Peselis, A., Serganov, A.
PDB entry 6dns: Endo-fucoidan hydrolase MfFcnA9 from glycoside hydrolase family 107
Classification: HYDROLASE
Source organism: Mariniflexile fucanivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2018-06-07
Authors: Vickers, C., Abe, K., Salama-Alber, O., Boraston, A.B.
PDB entry 6dnt: UDP-N-acetylglucosamine 4-epimerase from Methanobrevibacter ruminantium M1 in complex with UDP-N-acetylmuramic acid
Classification: SUGAR BINDING PROTEIN
Source organism: Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / OCM 146 / M1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2018-06-07
Authors: Carbone, V., Schofield, L.R., Sang, C., Sutherland-Smith, A.J., Ronimus, R.S.
PDB entry 6dnu: Crystal Structure of Neisseria meningitidis DsbD c-terminal domain in the oxidised form
Classification: OXIDOREDUCTASE
Source organism: Neisseria meningitidis (strain alpha14)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.283 Å
Deposited: 2018-06-07
Authors: Heras, B., Smith, R.P., Paxman, J.J.
PDB entry 6dnv: Crystal Structure of Neisseria meningitidis DsbD n-terminal domain in the reduced form
Classification: OXIDOREDUCTASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.603 Å
Deposited: 2018-06-08
Authors: Smith, R.P., Heras, B., Paxman, J.J.
PDB entry 6dnw: Sequence Requirements of the Listeria innocua prophage attP site
Classification: DNA BINDING PROTEIN
Source organism: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.849 Å
Deposited: 2018-06-08
Authors: Li, H., Sharp, R., Rutherford, K., Gupta, K., Van Duyne, G.D.
PDB entry 6dny: Solution structure of the cyclic tetrapeptide, PYPV
Classification: PROTEIN BINDING
Experimental method: SOLUTION NMR
Deposited: 2018-06-08
Authors: Shekhtman, A., Breindel, L., Zhang, Q., Chen, H.
PDB entry 6dnz: Trypanosoma brucei PRMT1 enzyme-prozyme heterotetrameric complex with AdoHcy
Classification: GENE REGULATION
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 2.384 Å
Deposited: 2018-06-08
Authors: Hashimoto, H., Kafkova, L., Jordan, K., Read, L.K., Debler, E.W.
PDB entry 6do0: Crystal structure of the multidrug binding transcriptional regulator LmrR in complex with Rhodium Bis-diphosphine Complex
Classification: METAL BINDING PROTEIN
Source organism: Lactococcus lactis subsp. cremoris (strain MG1363)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.798 Å
Deposited: 2018-06-08
Authors: Zadvornyy, O.A., Laureanti, J.A., Katipamula, S., O'Hagan, M., Peters, J.W.
PDB entry 6do1: Structure of nanobody-stabilized angiotensin II type 1 receptor bound to S1I8
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.901 Å
Deposited: 2018-06-08
Authors: Wingler, L.M., McMahon, C., Staus, D.P., Lefkowitz, R.J., Kruse, A.C.
PDB entry 6do2: Crystal structure of human GRP78 in complex with 7-deaza-2'-C-methyladenosine
Classification: chaperone, hydrolase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2018-06-08
Authors: Ferrie, R.P., Chen, Y., Antoshchenko, T., Cooney, O.M., Huang, Y., Park, H.W.
PDB entry 6do3: KLHDC2 ubiquitin ligase in complex with SelK C-end degron
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.165 Å
Deposited: 2018-06-08
Authors: Rusnac, D.V., Lin, H.C., Yen, H.C.S., Zheng, N.
PDB entry 6do4: KLHDC2 ubiquitin ligase in complex with SelS C-end degron
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-06-08
Authors: Rusnac, D.V., Lin, H.C., Yen, H.C.S., Zheng, N.
PDB entry 6do5: KLHDC2 ubiquitin ligase in complex with USP1 C-end degron
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2018-06-08
Authors: Rusnac, D.V., Lin, H.C., Yen, H.C.S., Zheng, N.
PDB entry 6do6: NMR solution structure of wild type apo hFABP1 at 308 K
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2018-06-09
Authors: Scanlon, M.J., Mohanty, B., Doak, B.C., Patil, R.
PDB entry 6do7: NMR solution structure of wild type hFABP1 with GW7647
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2018-06-09
Authors: Scanlon, M.J., Mohanty, B., Doak, B.C., Patil, R.
PDB entry 6do8: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 80 s at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.414 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6do9: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6doa: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 480 s at 21 C
Classification: hydrolase/dna/rna
Source organism: BACILLUS HALODURANS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.474 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6dob: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 200 s at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.343 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6doc: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 240 s at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.496 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6dod: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 360 s at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.535 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6doe: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 420 s at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.451 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6dof: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 540 s at 21 C
Classification: hydrolase/dna/rna
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.433 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6dog: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 600 s at 21 C
Classification: hydrolase/rna/dna
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.285 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6doh: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soak in 0.5 mM EGTA and 200 mM K+ at 21 C
Classification: HYDROLASE/RNA/DNA
Source organism: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.363 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6doi: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid (1.54 Angstrom wavelength): Soak in 0.5 mM EGTA and 200 mM K+ at 21 C
Classification: HYDROLASE/RNA/DNA
Source organism: Bacillus halodurans C-125; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.948 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.
PDB entry 6doj: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 5 mM K+ for 120 s at 21 C
Classification: HYDROLASE/DNA/RNA
Source organism: Bacillus halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.403 Å
Deposited: 2018-06-09
Authors: Samara, N.L., Yang, W.