LiteFold/PDB huggingface dataset:
PDB entry 7t72: Epitope-based selection of SARS-CoV-2 neutralizing antibodies from convalescent patients
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.177 Å
Deposited: 2021-12-14
Authors: Langley, D.B., Christ, D., Rouet, R.
PDB entry 7t73: HIV-1 Envelope ApexGT2.2MUT in complex with PCT64.LMCA Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-12-14
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 7t74: HIV-1 Envelope ApexGT2 in complex with PCT64.35S Fab and RM20A3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2021-12-14
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 7t75: HIV-1 Envelope ApexGT2 in complex with RM20A3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-12-14
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 7t76: HIV-1 Envelope ApexGT3 in complex with PG9.iGL Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.43 Å
Deposited: 2021-12-14
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 7t77: HIV-1 Envelope ApexGT3.N130 in complex with PG9 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.75 Å
Deposited: 2021-12-14
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 7t78: CRYSTAL STRUCTURE OF GLUCOKINASE (HEXOKINASE 4) COMPLEXED WITH LIGAND DIETHYL ({2-[3-(4-METHANESULFONYLPHENO XY)-5-{[(2S)-1-METHOXYPROPAN-2-YL]OXY}BENZAMIDO]-1,3-THIAZ OL-4-YL}METHYL)PHOSPHONATE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-12-14
Authors: Muckelbauer, J.K.
PDB entry 7t79: CRYSTAL STRUCTURE OF GLUCOKINASE (HEXOKINASE 4) COMPLEXED WITH LIGAND AKA DIETHYL {[3-(3-{[5-(AZETIDINE-1-CARBON YL)PYRAZIN-2-YL]OXY}-5-(PROPAN-2-YLOXY)BENZAMIDO)-1H- PYRAZOL-1-YL]METHYL}PHOSPHONATE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-12-14
Authors: Muckelbauer, J.K.
PDB entry 7t7a: Crystal Structure of Human SHOC2: A Leucine-Rich Repeat Protein
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2021-12-14
Authors: Hajian, B., Lemke, C., Kwon, J., Bian, Y., Fuller, C., Aguirre, J.
PDB entry 7t7b: Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with a cross-neutralizing antibody ADI-62113 Fab
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2021-12-14
Authors: Liu, H., Wilson, I.A.
PDB entry 7t7c: The hexagonal organization of Munc13-1 C1-C2B-MUN-C2C domains between lipid bilayers
Classification: EXOCYTOSIS
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2021-12-15
Authors: Grushin, K., Sindelar, C.V.
PDB entry 7t7d: MA-1-206-OXA-23 30s complex
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2021-12-15
Authors: Smith, C.A., Stewart, N.K., Vakulenko, S.B.
PDB entry 7t7e: MA-1-206-OXA-23 3 minute complex
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-12-15
Authors: Smith, C.A., Stewart, N.K., Vakulenko, S.B.
PDB entry 7t7f: MA-1-206-OXA-23 25 minute complex
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-12-15
Authors: Smith, C.A., Stewart, N.K., Vakulenko, S.B.
PDB entry 7t7g: Imipenem-OXA-23 2 minute complex
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-12-15
Authors: Smith, C.A., Stewart, N.K., Vakulenko, S.B.
PDB entry 7t7h: Crystal structure of Vaccinia Virus decapping enzyme D9 in complex with inhibitor CP100356
Classification: VIRAL PROTEIN/VIRAL PROTEIN INHIBITOR
Source organism: Vaccinia virus Western Reserve
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-12-15
Authors: Peters, J.K., Gross, J.D.
PDB entry 7t7i: EBV nuclear egress complex
Classification: VIRAL PROTEIN
Source organism: Human herpesvirus 4 strain B95-8
Experimental method: X-RAY DIFFRACTION
Resolution: 3.97 Å
Deposited: 2021-12-15
Authors: Thorsen, M.K., Heldwein, E.E.
PDB entry 7t7j: Crystal Structure of Phosphoserine aminotransferase from Klebsiella pneumoniae subsp. pneumoniae in complex with Pyridoxal phosphate
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae subsp. pneumoniae HS11286
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-12-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7t7k: Structure of SPAC806.04c protein from fission yeast bound to Co2+
Classification: HYDROLASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-12-15
Authors: Jacewicz, A., Sanchez, A.M., Shuman, S.
PDB entry 7t7l: Structure of human G9a SET-domain (EHMT2) in complex with covalent inhibitor (Compound 1)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-12-15
Authors: Park, K.-S., Kumar, P.
PDB entry 7t7m: Structure of human GLP SET-domain (EHMT1) in complex with covalent inhibitor (Compound 1)
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-12-15
Authors: Park, K.-S., Kumar, P.
PDB entry 7t7n: Structure of SPCC1393.13 protein from fission yeast
Classification: HYDROLASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-12-15
Authors: Jacewicz, A., Sanchez, A.M., Shuman, S.
PDB entry 7t7o: Structure of SPAC806.04c protein from fission yeast covalently bound to BeF3
Classification: HYDROLASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2021-12-15
Authors: Jacewicz, A., Sanchez, A.M., Shuman, S.
PDB entry 7t7q: R-27 In Complex with S. aureus DHFR and alpha-NADPH - Remediated for comparison with tNADPH
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-12-15
Authors: Reeve, S.M., Wang, S., Donald, B.R., Wright, D.L.
PDB entry 7t7r: Structure of Munc13-1 C1-C2B-MUN-C2C trimer between lipid bilayers
Classification: EXOCYTOSIS
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2021-12-15
Authors: Grushin, K., Sindelar, C.V.
PDB entry 7t7s: R-27 in Complex with S. aureus DHFR and tricyclic-NADPH (tNADPH)
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-12-15
Authors: Reeve, S.M., Wang, S., Donald, B.R., Wright, D.L.
PDB entry 7t7t: Structure of TSK/BRU1 bound to histone H3.1
Classification: NUCLEAR PROTEIN
Source organism: Citrus unshiu; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2021-12-15
Authors: Davarinejad, H., Couture, J.F.
PDB entry 7t7u: Light Harvesting complex phycocyanin PC 630, from the cryptophyte Chroomonas sp. M1627
Classification: PHOTOSYNTHESIS
Source organism: Chroomonas sp. M1627
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-12-15
Authors: Michie, K.A., Harrop, S.J., Rathbone, H.W., Wilk, K.E., Curmi, P.M.G.
PDB entry 7t7v: Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface
Classification: EXOCYTOSIS
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2021-12-15
Authors: Grushin, K., Sindelar, C.V.
PDB entry 7t7w: The peptide Lt-MAP4 is an analog derived from the Ltc-3a. The primary sequence of the parental peptide was used as template for rational design, using the amino acid residues for modification of charge and hydrophobicity.
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-12-15
Authors: Freitas, C.D.P., Moraes, L.F.R.N., Migliolo, L., Liao, L.M.
PDB entry 7t7x: Munc13-1 C1-C2B-MUN-C2C Upright conformation spanning two lipid bilayers
Classification: EXOCYTOSIS
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2021-12-15
Authors: Grushin, K., Sindelar, C.V.
PDB entry 7t7y: The crystal structure of family 8 carbohydrate-binding module from Dictyostelium discoideum complexed with iodine atoms
Classification: SUGAR BINDING PROTEIN
Source organism: Dictyostelium discoideum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2021-12-15
Authors: Marcelo, M.V., Campos, B.M., Squina, F.M.
PDB entry 7t7z: The crystal structure of family 8 carbohydrate-binding module from Dictyostelium discoideum
Classification: SUGAR BINDING PROTEIN
Source organism: Dictyostelium discoideum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2021-12-15
Authors: Marcelo, M.V., Campos, B.M., Squina, F.M.
PDB entry 7t80: Crystal Structure of Mouse Cadherin-23 EC18-19
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2021-12-15
Authors: Harrison-Rawn, T., Sotomayor, M.
PDB entry 7t81: Model of Munc13-1 C1-C2B-MUN-C2C 2D crystal between lipid bilayers.
Classification: EXOCYTOSIS
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2021-12-15
Authors: Grushin, K., Sindelar, C.V.
PDB entry 7t82: Crystal Structure of LEUKOCIDIN E/CENTYRIN S26/FAB B438
Classification: TOXIN
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2021-12-15
Authors: Luo, J., Malia, T.J., Buckley, P.T.
PDB entry 7t83: Structure of angiotensin II type I receptor (AT1R) nanobody antagonist AT118i4h32
Classification: IMMUNE SYSTEM
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-12-15
Authors: Skiba, M.A., Kruse, A.C.
PDB entry 7t84: Structure of angiotensin II type I receptor (AT1R) nanobody antagonist AT118i4h32 G26D T57I variant
Classification: IMMUNE SYSTEM
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-12-15
Authors: Nemeth, G.R., Skiba, M.A., Kruse, A.C.
PDB entry 7t85: Crystal Structure of the N-terminal Domain of the Phosphate Acetyltransferase from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-12-15
Authors: Kim, Y., Dementiev, A., Welk, L., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7t86: Crystal Structure of Fab CR5133 / Phospho-SD Peptide Complex
Classification: TOXIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-12-15
Authors: Luo, J., Malia, T.J., Buckley, P.T.
PDB entry 7t87: CRYSTAL STRUCTURE OF LEUKOCIDIN AB/CENTYRIN S17/FAB 214F COMPLEX
Classification: TOXIN
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-12-15
Authors: Luo, J., Malia, T.J., Buckley, P.T.
PDB entry 7t88: Crystal Structure of the C-terminal Domain of the Phosphate Acetyltransferase from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-12-15
Authors: Kim, Y., Dementiev, A., Welk, L., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7t89: Light harvesting complex Phycocyanin PC577 from the cryptophyte Hemiselmis pacifica CCMP 706
Classification: PHOTOSYNTHESIS
Source organism: Hemiselmis pacifica
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2021-12-16
Authors: Michie, K.A., Curmi, P.C., Harrop, S., Rathbone, H.W.
PDB entry 7t8b: Octameric Human Twinkle Helicase Clinical Variant W315L
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-12-16
Authors: Riccio, A.A., Bouvette, J., Krahn, J., Borgnia, M.J., Copeland, W.C.
PDB entry 7t8c: Heptameric Human Twinkle Helicase Clinical Variant W315L
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2021-12-16
Authors: Riccio, A.A., Bouvette, J., Krahn, J., Borgnia, M.J., Copeland, W.C.
PDB entry 7t8d: Myocilin OLF mutant V449I
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2021-12-16
Authors: Scelsi, H.S., Barlow, B.M., Lieberman, R.L.
PDB entry 7t8e: G93A mutant of human SOD1 in P21 space group
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-12-16
Authors: Amporndanai, K., Hasnain, S.S.
PDB entry 7t8f: G93A mutant of human SOD1 bound with Ebselen in P21 space group
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-12-16
Authors: Amporndanai, K., Hasnain, S.S.
PDB entry 7t8g: G93A mutant of human SOD1 bound with MR6-8-2 in P21 space group
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2021-12-16
Authors: Amporndanai, K., Hasnain, S.S.
PDB entry 7t8h: G93A mutant of human SOD1 bound with MR6-26-2 in P21 space group
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-12-16
Authors: Amporndanai, K., Hasnain, S.S.
PDB entry 7t8i: Crystal structure of the ImmR transcriptional regulator DNA-binding domain of Bacillus subtilis
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-12-16
Authors: Caliandro, R., de Diego, I., Gomis-Ruth, F.X.
PDB entry 7t8j: The ubiquitin-associated domain of human thirty-eight negative kinase-1 flexibly fused to the 1TEL crystallization chaperone via a GSGG linker
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2021-12-16
Authors: Soleimani, S., Pedroza Romo, M.J., Smith, T., Brown, S., Doukov, T., Moody, J.D.
PDB entry 7t8k: BrxR from Acinetobacter BREX type I phage restriction system bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Acinetobacter sp. NEB 394; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-12-16
Authors: Doyle, L., Kaiser, B., Stoddard, B.
PDB entry 7t8l: BrxR from Acinetobacter BREX type I phage restriction system
Classification: DNA BINDING PROTEIN
Source organism: Acinetobacter sp. NEB 394
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-12-16
Authors: Doyle, L., Kaiser, B., Stoddard, B.
PDB entry 7t8m: Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 5/6
Classification: VIRAL PROTEIN
Source organism: Escherichia coli; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-12-16
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 7t8n: Crystal structure of the PNAG binding module PgaA-TPR 220-359
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-12-16
Authors: Pfoh, R., Little, D.J., Howell, P.L.
PDB entry 7t8o: Crystal Structure of the Crp/Fnr Family Transcriptional Regulator from Listeria monocytogenes
Classification: TRANSCRIPTION
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2021-12-16
Authors: Kim, Y., Makowska-Grzyska, M., Maltseva, N., Shatsman, S., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7t8p: CRYSTAL STRUCTURE OF T151V CAO1
Classification: OXIDOREDUCTASE
Source organism: Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-12-16
Authors: Daruwalla, A., Kiser, P.D.
PDB entry 7t8q: CRYSTAL STRUCTURE OF T151G CAO1
Classification: OXIDOREDUCTASE
Source organism: Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-12-16
Authors: Daruwalla, A., Kiser, P.D.
PDB entry 7t8r: Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 7/8
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-12-16
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 7t8s: Light Harvesting complex phycoerythrin PE 566, from the cryptophyte Cryptomonas pyrenoidifera
Classification: PHOTOSYNTHESIS
Source organism: Cryptomonas pyrenoidifera
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-12-17
Authors: Michie, K.A., Harrop, S.J., Rathbone, H.W., Wilk, K.E., Curmi, P.M.G.
PDB entry 7t8t: CryoEM structure of PLCg1
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2021-12-17
Authors: Endo-Streeter, S., Sondek, J.
PDB entry 7t8u: Structure of PSMbeta2 nanotubes
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2021-12-17
Authors: Kreutzberger, M.A., Wang, S., Egelman, E.H., Conicello, V.P.
PDB entry 7t8v: Co-crystal structure of Chaetomium glucosidase I with EB-0159
Classification: HYDROLASE/INHIBITOR
Source organism: Chaetomium thermophilum var. thermophilum DSM 1495
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-12-17
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 7t8w: Structure of antibody 3G12 bound to Respiratory Syncytial Virus G central conserved domain mutant S177Q
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human respiratory syncytial virus A2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-12-17
Authors: Nunez Castrejon, A.M., O'Rourke, S.M., Kauvar, L.M., DuBois, R.M.
PDB entry 7t8x: Cryo-EM structure of ACh-bound M2R-Go signaling complex in S1 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2021-12-17
Authors: Xu, J., Wang, Q., Du, Y., Kobilka, B.K.
PDB entry 7t8y: Structure of Class A sortase from Streptococcus pyogenes bound to lipid II mimetic, LPATA: Thr-in conformation
Classification: HYDROLASE
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-12-17
Authors: Piper, I.M., Antos, J.M., Amacher, J.F.
PDB entry 7t8z: Structure of Class A sortase from Streptococcus pyogenes bound to lipid II mimetic, LPATA: Thr-out conformation
Classification: HYDROLASE
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-12-17
Authors: Piper, I.M., Antos, J.M., Amacher, J.F.
PDB entry 7t90: Cryo-EM structure of ACh-bound M2R-Go signaling complex in S2 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2021-12-17
Authors: Xu, J., Wang, Q., Du, Y., Kobilka, B.K.
PDB entry 7t91: Crystal structure of Zinc finger motif 1 and 2 of GLI1 DNA binding region
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-12-17
Authors: Wu, M., Zhang, S., Augelli-Szanfran, C.E., Boohaker, R.J.
PDB entry 7t92: Structure of the peroxisomal retro-translocon formed by a heterotrimeric ubiquitin ligase complex
Classification: TRANSLOCASE
Source organism: synthetic construct; Thermothelomyces thermophilus ATCC 42464
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-12-17
Authors: Peiqiang, F., Tom, R.
PDB entry 7t93: Crystal Structure of Fumarate hydratase class II from Mycobacterium ulcerans in complex with L-Malate
Classification: LYASE
Source organism: Mycobacterium ulcerans Agy99
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-12-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7t94: Cryo-EM structure of S1 state ACh-bound M2R-Go signaling complex with a PAM
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2021-12-17
Authors: Xu, J., Wang, Q., Du, Y., Kobilka, B.K.
PDB entry 7t96: Cryo-EM structure of S2 state ACh-bound M2R-Go signaling complex with a PAM
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2021-12-18
Authors: Xu, J., Wang, Q., Du, Y., Kobilka, B.K.
PDB entry 7t97: Crystal structure of engineered CYS-CYS fab dimer CH1-207 (HC4)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.144 Å
Deposited: 2021-12-18
Authors: Harris, S.F., Boenig, G.D.L.
PDB entry 7t98: Crystal structure of engineered CYS-CYS fab dimer VL-108 (LC33)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2021-12-18
Authors: Harris, S.F., Boenig, G.D.L.
PDB entry 7t99: Crystal structure of engineered CYS-CYS fab dimer CL-205 (LC25)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2021-12-18
Authors: Harris, S.F., Boenig, G.D.L.
PDB entry 7t9a: ApexGT2 in complex with GT2-d42.16 and RM20A3 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2021-12-18
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 7t9b: ApexGT5 in complex with GT5-d42.16 and RM20A3 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2021-12-18
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 7t9c: Crystal structure of dehaloperoxidase B in complex with thymol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2021-12-18
Authors: de Serrano, V.S., Ghiladi, R.A., Malewschik, T., Yun, D.
PDB entry 7t9d: Crystal structure of dehaloperoxidase B in complex with -(-) limonene oxide
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2021-12-18
Authors: de Serran, V.S., Ghiladi, R.A., Malewschik, T., Yun, D.
PDB entry 7t9e: Crystal structure of dehaloperoxidase B in complex with +(-)-limonene oxide
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2021-12-18
Authors: de Serrano, V.S., Ghiladi, R.A., Malewschik, T., Yun, D.
PDB entry 7t9f: Structure of VcINDY-apo
Classification: MEMBRANE PROTEIN
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2021-12-19
Authors: Sauer, D.B., Marden, J.J., Song, J.M., Wang, D.N.
PDB entry 7t9g: Structure of VcINDY-Na+
Classification: MEMBRANE PROTEIN
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2021-12-19
Authors: Sauer, D.B., Marden, J.J., Song, J.M., Wang, D.N.
PDB entry 7t9h: HIV Integrase in complex with Compound-15
Classification: DNA BINDING PROTEIN, Viral protein
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2021-12-19
Authors: Khan, J.A., Lewis, H., Kish, K.
PDB entry 7t9i: Native human TSH bound to human Thyrotropin receptor in complex with miniGs399 (composite structure)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-12-19
Authors: Faust, B., Cheng, Y., Manglik, A.
PDB entry 7t9j: Cryo-EM structure of the SARS-CoV-2 Omicron spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2021-12-19
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Tuttle, K.S., Subramaniam, S.
PDB entry 7t9k: Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2021-12-19
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Tuttle, K.S., Subramaniam, S.
PDB entry 7t9l: Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2021-12-19
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Tuttle, K.S., Subramaniam, S.
PDB entry 7t9m: Human Thyrotropin receptor bound by CS-17 Inverse Agonist Fab/Org 274179-0 Antagonist
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-12-19
Authors: Faust, B., Cheng, Y., Manglik, A.
PDB entry 7t9n: M22 Agonist Autoantibody bound to Human Thyrotropin receptor in complex with miniGs399 (composite structure)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-12-19
Authors: Faust, B., Cheng, Y., Manglik, A.
PDB entry 7t9o: HIV Integrase in complex with Compound-25
Classification: DNA BINDING PROTEIN, Viral Protein
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-12-19
Authors: Khan, J.A., Lewis, H., Kish, K.
PDB entry 7t9p: Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain native virion
Classification: VIRUS
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2021-12-19
Authors: Fu, J., Klose, T., Kuhn, R.J., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7t9q: Crystal structure of Crocodile defensin CpoBD13
Classification: ANTIMICROBIAL PROTEIN
Source organism: Crocodylus porosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-12-19
Authors: Kvansakul, M., Williams, S., Hulett, M.D.
PDB entry 7t9r: Crystal structure of Crocodile defensin CpoBD13:phosphatidic acid complex
Classification: ANTIMICROBIAL PROTEIN
Source organism: Crocodylus porosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-12-19
Authors: Kvansakul, M., Williams, S., Hulett, M.D.
PDB entry 7t9t: Cryo-EM structure of CH235.12 in complex with HIV-1 Env trimer CH505TF.N279K.SOSIP.664 with complex glycans
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-12-20
Authors: Manne, K., Acharya, P.
PDB entry 7t9u: Crystal structure of hSTING with an agonist (SHR169224)
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2021-12-20
Authors: Chowdhury, R., Miller, M.
PDB entry 7t9v: Crystal structure of hSTING with the agonist, SHR171032
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2021-12-20
Authors: Chowdhury, R., Miller, M.
PDB entry 7t9w: Crystal structure of the Nsp3 bSM (Betacoronavirus-Specific Marker) domain from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-12-20
Authors: Stogios, P.J., Skarina, T., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7t9x: Saccharomyces cerevisiae Pex12 RING domain
Classification: LIGASE
Source organism: Bacteria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2021-12-20
Authors: Feng, P., Rapoport, T.
PDB entry 7t9y: Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 8/9
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2021-12-20
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 7t9z: Human Ornithine Aminotransferase (hOAT) crystallized at pH 6.0
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-12-20
Authors: Butrin, A., Liu, D.
PDB entry 7ta0: Human Ornithine Aminotransferase (hOAT) soaked with 5-aminovaleric acid
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2021-12-20
Authors: Butrin, A., Liu, D.
PDB entry 7ta1: Human Ornithine Aminotransferase (hOAT) soaked with gamma-Aminobutyric acid
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-12-20
Authors: Butrin, A., Wawrzak, Z., Liu, D.
PDB entry 7ta2: Crystal structure of the human sperm-expressed surface protein SPACA6
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-12-20
Authors: Vance, T.D.R., Yip, P., Jimenez, E., Uson, I., Lee, J.E.
PDB entry 7ta3: Trimer-to-Monomer Disruption of Tumor Necrosis Factor-alpha (TNF-alpha) by alpha-peptide-3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-12-20
Authors: Niu, J., Bingman, C.A., Gellman, S.H.
PDB entry 7ta4: Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 9/10
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-12-20
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 7ta5: Crystal structure of cyanophycin synthetase 2 from Gloeothece citriformis
Classification: LIGASE
Source organism: Gloeothece citriformis
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-12-20
Authors: Sharon, I., Schmeing, T.M.
PDB entry 7ta6: Trimer-to-Monomer Disruption of Tumor Necrosis Factor-alpha (TNF-alpha) by unnatural alpha/beta-peptide-1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2021-12-20
Authors: Niu, J., Bingman, C.A., Gellman, S.H.
PDB entry 7ta7: Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 10/11
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2021-12-20
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 7ta8: NMR structure of crosslinked cyclophilin A
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2021-12-20
Authors: Lu, M., Toptygin, D., Xiang, Y., Shi, Y., Schwieters, C.D., Lipinski, E.C., Ahn, J., Byeon, I.-J.L., Gronenborn, A.M.
PDB entry 7ta9: Crystal Structure of thymidylate synthase from Acinetobacter baumannii
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-12-20
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7taa: FAMILY 13 ALPHA AMYLASE IN COMPLEX WITH ACARBOSE
Classification: HYDROLASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 1997-10-06
Authors: Davies, G.J., Brzozowski, A.M.
PDB entry 7tab: G-925 bound to the SMARCA4 (BRG1) Bromodomain
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2021-12-20
Authors: Tang, Y., Poy, F., Taylor, A.M., Cochran, A.G., Bellon, S.F.
PDB entry 7tac: Cryo-EM structure of the (TGA3)2-(NPR1)2-(TGA3)2 complex
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-12-20
Authors: Wu, Q., Zhou, Y., Bartesaghi, A., Dong, X., Zhou, P.
PDB entry 7tad: CryoEM structure of the (NPR1)2-(TGA3)2 complex
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-12-20
Authors: Wu, Q., Zhou, Y., Bartesaghi, A., Dong, X., Zhou, P.
PDB entry 7tae: Crystal Structure of the NPR1-Interacting Domain of TGA3
Classification: DNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-12-20
Authors: Cheng, J., Zhou, P.
PDB entry 7taf: Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain virion in complex with inhibitor 11526092
Classification: VIRUS/INHIBITOR
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2021-12-20
Authors: Fu, J., Klose, T., Kuhn, R.J., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tag: Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain virion in complex with pleconaril
Classification: VIRUS/INHIBITOR
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-12-20
Authors: Fu, J., Klose, T., Kuhn, R.J., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tah: Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain in complex with inhibitor 11526091 (no/low occupancy-no inhibitor modeled)
Classification: VIRUS
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2021-12-20
Authors: Fu, J., Klose, T., Kuhn, R.J., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tai: Structure of STEAP2 in complex with ligands
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-12-20
Authors: Wang, L., Chen, K.H., Zhou, M.
PDB entry 7taj: Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain in complex with inhibitor 11526093 (no/low occupancy-no inhibitor modeled)
Classification: VIRUS
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2021-12-20
Authors: Fu, J., Klose, T., Kuhn, R.J., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tak: Structure of a NAT transporter
Classification: TRANSPORT PROTEIN
Source organism: Colwellia psychrerythraea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79828 Å
Deposited: 2021-12-21
Authors: Weng, J., Zhou, X., Ren, Z., Chen, K., Zhou, M.
PDB entry 7tal: LOV2-DARPIN fusion : D4_deltaDARP
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2021-12-21
Authors: Mittl, P.
PDB entry 7tam: HRas G12V in complex with GDP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2021-12-21
Authors: Kouidmi, I., Maddalena, M., Laplante, S.
PDB entry 7tan: Structure of VRK1 C-terminal tail bound to nucleosome core particle
Classification: STRUCTURAL PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-12-21
Authors: Spangler, C.J., Budziszewski, G.R., McGinty, R.K.
PDB entry 7tao: Cryo-EM structure of bafilomycin A1 bound to yeast VO V-ATPase
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-12-21
Authors: Keon, K.A., Rubinstein, J.L., Benlekbir, S., Kirsch, S.H., Muller, R.
PDB entry 7tap: Cryo-EM structure of archazolid A bound to yeast VO V-ATPase
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-12-21
Authors: Keon, K.A., Rubinstein, J.L., Benlekbir, S., Kirsch, S.H., Muller, R.
PDB entry 7tas: SARS-CoV-2 spike in complex with the S2K146 neutralizing antibody Fab fragment (local refinement of the RBD and S2K146)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-12-21
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7tat: SARS-CoV-2 spike in complex with the S2K146 neutralizing antibody Fab fragment (two receptor-binding domains open)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-12-21
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 7tau: Refined capsid structure of human adenovirus D26 at 3.4 A resolution
Classification: VIRUS
Source organism: Human adenovirus 26
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2021-12-21
Authors: Reddy, V.S., Yu, X., Barry, M.A.
PDB entry 7tav: Crystal Structure of the PBP2_YvgL_like protein Lmo1041 from Listeria monocytogene
Classification: TRANSPORT PROTEIN
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2021-12-21
Authors: Kim, Y., Maltseva, N., Grimshaw, S., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7taw: Cryo-EM structure of the Csy-AcrIF24-promoter DNA dimer
Classification: HYDROLASE/RNA/DNA
Source organism: Pseudomonas; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-12-21
Authors: Mukherjee, I.A., Chang, L.
PDB entry 7tax: Cryo-EM structure of the Csy-AcrIF24-promoter DNA complex
Classification: HYDROLASE/RNA/DNA
Source organism: Pseudomonas; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-12-21
Authors: Mukherjee, I.A., Chang, L.
PDB entry 7tay: Bos Taurus Mitochondrial BC1 in complex with Pyramoxadone
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2021-12-21
Authors: Xia, D., Zhou, F., Esser, L.
PDB entry 7taz: Crystal structure of HIV-1 reverse transcriptase (RT) in complex with VM-1500A, a non-nucleoside RT inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-12-21
Authors: Snyder, A.A., Risener, C.J., Kirby, K.A., Sarafianos, S.G.
PDB entry 7tb0: E. faecium MurAA in complex with fosfomycin and UNAG
Classification: TRANSFERASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-12-21
Authors: Zhou, Y., Shamoo, Y.
PDB entry 7tb1: Crystal structure of STUB1 with a macrocyclic peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.785 Å
Deposited: 2021-12-21
Authors: Bahmanjah, S., Klein, D.J.
PDB entry 7tb2: Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 12/13
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-12-21
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 7tb3: cryo-EM structure of MBP-KIX-apoferritin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2021-12-21
Authors: Zhang, K., Horikoshi, N., Li, S., Powers, A., Hameedi, M., Pintilie, G., Chae, H., Khan, Y., Suomivuori, C., Dror, R., Sakamoto, K., Chiu, W., Wakatsuki, S.
PDB entry 7tb4: Cryo-EM structure of the spike of SARS-CoV-2 Omicron variant of concern
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2021-12-21
Authors: Zhou, T., Tsybovsky, T., Kwong, P.D.
PDB entry 7tb5: Structure of P. aeruginosa PA17 CapW
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-12-21
Authors: Blankenchip, C.L., Nguyen, J.V., Lau, R.K., Ye, Q., Corbett, K.D.
PDB entry 7tb6: Structure of S. maltophilia CapW
Classification: DNA BINDING PROTEIN
Source organism: Stenotrophomonas maltophilia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2021-12-21
Authors: Blankenchip, C.L., Nguyen, J.V., Lau, R.K., Ye, Q., Corbett, K.D.
PDB entry 7tb7: Crystal structure of D179N KPC-2 beta-lactamase
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2021-12-21
Authors: van den Akker, F., Alsenani, T.
PDB entry 7tb8: Cryo-EM structure of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2021-12-21
Authors: Zhou, T., Tsybovsky, T., Kwong, P.D.
PDB entry 7tb9: Structural characterization of the biological synthetic peptide pCEMP1
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-12-21
Authors: Lopez Giraldo, A., del Rio Portilla, F., Nidome Campos, M., Romo Arevalo, E., Arzate, H.
PDB entry 7tba: Pentraxin - ligand complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2021-12-21
Authors: Shing, K.S.C.T., Morton, C.J., Parker, M.W.
PDB entry 7tbb: Crystal structure of Plasmepsin X from Plasmodium falciparum
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-12-21
Authors: Christensen, J.B., Hodder, A.N., Dietrich, M.H., Scally, S.W., Cowman, A.F.
PDB entry 7tbc: Crystal structure of Plasmepsin X from Plasmodium falciparum in complex with WM382
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2021-12-21
Authors: Christensen, J.B., Hodder, A.N., Scally, S.W., Cowman, A.F.
PDB entry 7tbd: Crystal structure of Plasmepsin X from Plasmodium vivax in complex with WM382
Classification: HYDROLASE
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2021-12-21
Authors: Hodder, A.N., Christensen, J.B., Scally, S.W., Cowman, A.F.
PDB entry 7tbe: Crystal structure of Plasmepsin X from Plasmodium vivax in complex with WM4
Classification: HYDROLASE
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2021-12-21
Authors: Hodder, A.N., Christensen, J.B., Scally, S.W., Cowman, A.F.
PDB entry 7tbf: Locally refined region of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-12-21
Authors: Zhou, T., Tsybovsky, T., Kwong, P.D.
PDB entry 7tbg: AtTPC1 D454N with 1 mM Ca2+
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2021-12-22
Authors: Dickinson, M.S., Stroud, R.M.
PDB entry 7tbh: cryo-EM structure of MBP-KIX-apoferritin complex with peptide 7
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2021-12-22
Authors: Zhang, K., Horikoshi, N., Li, S., Powers, A., Hameedi, M., Pintilie, G., Chae, H., Khan, Y., Suomivuori, C., Dror, R., Sakamoto, K., Chiu, W., Wakatsuki, S.
PDB entry 7tbi: Composite structure of the S. cerevisiae nuclear pore complex (NPC)
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 25 Å
Deposited: 2021-12-22
Authors: Petrovic, S., Samanta, D., Perriches, T., Bley, C.J., Thierbach, K., Brown, B., Nie, S., Mobbs, G.W., Stevens, T.A., Liu, X., Tomaleri, G.P., Schaus, L., Hoelz, A.
PDB entry 7tbj: Composite structure of the human nuclear pore complex (NPC) symmetric core generated with a 12A cryo-ET map of the purified HeLa cell NPC
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 23 Å
Deposited: 2021-12-22
Authors: Petrovic, S., Samanta, D., Perriches, T., Bley, C.J., Thierbach, K., Brown, B., Nie, S., Mobbs, G.W., Stevens, T.A., Liu, X., Tomaleri, G.P., Schaus, L., Hoelz, A.
PDB entry 7tbk: Composite structure of the dilated human nuclear pore complex (NPC) symmetric core generated with a 37A in situ cryo-ET map of CD4+ T cell NPC
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 37 Å
Deposited: 2021-12-22
Authors: Petrovic, S., Samanta, D., Perriches, T., Bley, C.J., Thierbach, K., Brown, B., Nie, S., Mobbs, G.W., Stevens, T.A., Liu, X., Tomaleri, G.P., Schaus, L., Hoelz, A.
PDB entry 7tbl: Composite structure of the human nuclear pore complex (NPC) cytoplasmic face generated with a 12A cryo-ET map of the purified HeLa cell NPC
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 23 Å
Deposited: 2021-12-22
Authors: Bley, C.J., Nie, S., Mobbs, G.W., Petrovic, S., Gres, A.T., Liu, X., Mukherjee, S., Harvey, S., Huber, F.M., Lin, D.H., Brown, B., Tang, A.W., Rundlet, E.J., Correia, A.R., Chen, S., Regmi, S.G., Stevens, T.A., Jette, C.A., Dasso, M., Patke, A., Palazzo, A.F., Kossiakoff, A.A., Hoelz, A.