LiteFold/PDB huggingface dataset:
PDB entry 8xso: RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-09
Authors: Kujirai, T., Kato, J., Yamamoto, K., Hirai, S., Negishi, L., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8xsq: Pseudomonas aeruginosa Histidinol dehydrogenase native structure without Zn+
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-01-09
Authors: Choudhury, G.B., Datta, S.
PDB entry 8xsr: Cryo-EM structure of MsRv1273c/72c from Mycobacterium smegmatis in the ATP|ADP-bound IFasym-2 state
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-01-09
Authors: Yu, J., Li, J.
PDB entry 8xss: Cryo-EM structure of MsRv1273c/72c from Mycobacterium smegmatis in the ADP-bound IFasym-3 state (ATP 37 degrees C treated
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-01-09
Authors: Yu, J., Li, J.
PDB entry 8xst: Cryo-EM structure of MsRv1273c/72c from Mycobacterium smegmatis in the ADP-bound IFasym-3 state (ADP 4 degrees C treated)
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-09
Authors: Yu, J., Li, J.
PDB entry 8xsu: Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Dinotefuran
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.632 Å
Deposited: 2024-01-10
Authors: Ihara, M., Okajima, T., Matsuda, K.
PDB entry 8xsv: crystal structure of PPAT mutant P8A
Classification: TRANSFERASE
Source organism: Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-10
Authors: Yin, H.S.
PDB entry 8xsw: Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Complexed with Dinotefuran
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-01-10
Authors: Ihara, M., Okajima, T., Yamashita, A., Matsuda, K.
PDB entry 8xsx: Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-01-10
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8xsy: Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-10
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8xsz: Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-10
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8xt0: Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-10
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8xt1: Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-10
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8xt2: Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-10
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8xt3: Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-10
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8xt5: The closed state of RGLG5-VWA
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.391 Å
Deposited: 2024-01-10
Authors: Wang, Q.
PDB entry 8xt7: The crystal structure of human AS3MT
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-01-10
Authors: Chun, I.S., Kim, M.S.
PDB entry 8xt8: Clostridioides difficile MarR (WP_003434724) with Hg-bound
Classification: TRANSCRIPTION
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-10
Authors: Park, S., Kwon, N.
PDB entry 8xt9: structure of LGR4
Classification: MEMBRANE PROTEIN
Source organism: Camelus bactrianus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-10
Authors: Wang, L., Geng, Y.
PDB entry 8xta: Clostridioides difficile MarR (WP_003434724)
Classification: TRANSCRIPTION
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-10
Authors: Park, S., Kwon, N.
PDB entry 8xtb: Crystal structure of a novel PU plastic degradation urethanase UMG-SP2 from uncultured bacterium in complex with ligand
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-01-10
Authors: Cong, L., Li, Z.S., Zheng, Z.R., Han, X., Wei, R., Liu, W.D., Uwe, B.
PDB entry 8xtc: Crystal structure of a novel PU plastic degradation urethanase UMG-SP2 mutant from uncultured bacterium in complex with ligand
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-10
Authors: Cong, L., Li, Z.S., Zheng, Z.R., Han, X., Gert, W., Wei, R., Liu, W.D., Bornscheuer, U.T.
PDB entry 8xtd: SARS-CoV-2 papain-like-protease (PLpro) in complex with inhibitor Linagliptin
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-01-10
Authors: Choudhary, S., Verma, S., Kumar, P., Tomar, S.
PDB entry 8xte: Crystal structure of methyltransferase MpaG' in complex with SAH and FDHMP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penicillium brevicompactum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-01-10
Authors: You, C., Pan, Y.J., Li, S.Y., Feng, Y.G.
PDB entry 8xtf: Crystal structure of methyltransferase MpaG' in complex with SAH and FDHMP-3C
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penicillium brevicompactum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-01-10
Authors: You, C., Pan, Y.J., Li, S.Y., Feng, Y.G.
PDB entry 8xtg: Crystal structure of methyltransferase MpaG' in complex with SAH and DMMPA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penicillium brevicompactum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-10
Authors: You, C., Pan, Y.J., Li, S.Y., Feng, Y.G.
PDB entry 8xth: Thanatin PM15Y in LPS
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-01-10
Authors: Swaleeha, A., Bhattacharrya, S.
PDB entry 8xtn: Human Keratin 19 head domain segment Y6-G38 in solution
Classification: CYTOSOLIC PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-01-11
Authors: Jeong, M., Ji, Y., Kim, J., Lee, C.H.
PDB entry 8xto: Human Keratin 19 head domain segment L18-G38 in solution
Classification: CYTOSOLIC PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-01-11
Authors: Jeong, M., Ji, Y., Kim, J., Lee, C.H.
PDB entry 8xtp: Comamonas testosteroni KF-1 circularly permuted group II intron Post-2S state
Classification: RNA
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-11
Authors: Wang, L., Xie, J.H., Zhang, C., Zou, J., Huang, Z.R., Shang, S.T., Chen, X.Y., Yang, Y., Liu, J., Dong, H.H., Huang, D.M., Su, Z.M.
PDB entry 8xtq: Comamonas testosteroni KF-1 circularly permuted group II intron 1S state
Classification: RNA
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-01-11
Authors: Wang, L., Xie, J.H., Zhang, C., Zou, J., Huang, Z.R., Shang, S.T., Chen, X.Y., Yang, Y., Liu, J., Dong, H.H., Huang, D.M., Su, Z.M.
PDB entry 8xtr: Comamonas testosteroni KF-1 circularly permuted group II intron 2S state
Classification: RNA
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-01-11
Authors: Wang, L., Xie, J.H., Zhang, C., Zou, J., Huang, Z., Shang, S., Chen, X., Yang, Y., Liu, J., Dong, H., Huang, D., Su, Z.
PDB entry 8xts: Comamonas testosteroni KF-1 circularly permuted group II intron Pre-1S state
Classification: RNA
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-01-11
Authors: Wang, L., Xie, J.H., Zhang, C., Zou, J., Huang, Z.R., Shang, S.T., Chen, X.Y., Yang, Y., Liu, J., Dong, H.H., Huang, D.M., Su, Z.M.
PDB entry 8xtt: Nuclear receptor Nor1 ligand binding domain
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-01-11
Authors: Yoo, J.Y., Yoon, H.S.
PDB entry 8xtu: Crystal Structure of Rab5b GTPase domain from Leishmania donovani in complex with GDP
Classification: ENDOCYTOSIS
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-11
Authors: Zohib, M., Pal, R.K., Biswal, B.K., Arora, A.
PDB entry 8xtv: Crystal structure of AaHPPD-Y14150 complex
Classification: OXIDOREDUCTASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.994 Å
Deposited: 2024-01-11
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xtw: Structure of human VAChT in complex with acetylcholine
Classification: TRANSPORT PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-12
Authors: Zhao, Y., Ma, Q., Dong, Y., Meng, Y.
PDB entry 8xtx: Structure of human VAChT in an apo conformation
Classification: TRANSPORT PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-01-12
Authors: Zhao, Y., Ma, Q., Dong, Y., Meng, Y.
PDB entry 8xty: Structure of human VAChT in complex with vesamicol
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-12
Authors: Zhao, Y., Ma, Q., Dong, Y., Meng, Y.
PDB entry 8xtz: Crystal structure of Lsd18 in complex with a substrate
Classification: FLAVOPROTEIN
Source organism: Streptomyces lasalocidi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-01-12
Authors: Deng, Y.M., Hu, Y.L., Chen, X.
PDB entry 8xu0: Clostridioides difficile MarR (WP_003434724) with salicylate
Classification: TRANSCRIPTION
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-01-12
Authors: Park, S., Kwon, N.
PDB entry 8xu1: DaCS-oxaloacetate complex
Classification: TRANSFERASE
Source organism: Desulfurella acetivorans A63
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2024-01-12
Authors: Yang, L., Fang, Y.J.
PDB entry 8xu2: DaCS-citrate complex
Classification: TRANSFERASE
Source organism: Desulfurella acetivorans A63
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2024-01-12
Authors: Yang, L.Y., Fang, Y.J.
PDB entry 8xu3: Crystal structure of a sulfotransferase S4 from in complex with PAP and PNP
Classification: TRANSFERASE
Source organism: Bambusicola thoracicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-01-12
Authors: Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.
PDB entry 8xu4: The Crystal Structure of MAPK2 from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-01-12
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Shen, Z.
PDB entry 8xu5: The Crystal Structure of RORgT from Biortus.
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2024-01-12
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Wu, B.
PDB entry 8xu6: Structural Insights into the Tumor Suppressor ZMYND11 Reveal Diverse Recognition Mechanisms
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.628 Å
Deposited: 2024-01-12
Authors: Bai, X., Chen, Z.
PDB entry 8xu7: Crystal structure of Lsd18 in complex with a product
Classification: FLAVOPROTEIN
Source organism: Streptomyces lasalocidi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-01-12
Authors: Deng, Y.M., Chen, X.
PDB entry 8xu8: State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
Classification: TRANSLATION
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-01-12
Authors: Cheng, J., Wu, C.L., Li, J.X., Zhang, X.Z.
PDB entry 8xu9: Crystal structure of AtHPPD-YH20531 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.217 Å
Deposited: 2024-01-12
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xua: Outer membrane protein from Vibrio campbellii 25 kDa (OmpV25)
Classification: TRANSPORT PROTEIN
Source organism: Vibrio harveyi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-01-12
Authors: Meesrikaew, P., Sanram, S., Robinson, R., Suginta, W.
PDB entry 8xub: Crystal structure of Y-50 TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-12
Authors: Asa, M., Nagae, M., Yamasaki, S.
PDB entry 8xuc: Crystal structure of AtHPPD + ZJ-1 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2024-01-12
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xud: Crystal structure of adaptor NlpI in complex with endopeptidase MepS and PDZ-protease Prc
Classification: PROTEIN BINDING
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2024-01-12
Authors: Tzeng, S.R., Wang, S., Huang, C.H.
PDB entry 8xue: Crystal structure of AtHPPD-Y191497 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.218 Å
Deposited: 2024-01-12
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xuf: CDF1 Dof domain in palindromic-bound complex with DNA duplex
Classification: DNA/DNA BINDING PROTEIN
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-12
Authors: Furihata, H., Tanokura, M., Miyakawa, T.
PDB entry 8xug: Crystal structure of AtHPPD-YH21831 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.893 Å
Deposited: 2024-01-12
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xuj: Structure of beta-1,2-glucanase from Endozoicomonas elysicola (EeSGL1, ligand-free)
Classification: HYDROLASE
Source organism: Endozoicomonas elysicola DSM 22380
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-13
Authors: Nakajima, M., Motouchi, S., Nakai, H.
PDB entry 8xuk: Structure of beta-1,2-glucanase from Photobacterium gaetbulicola (PgSGL3, ligand-free)
Classification: HYDROLASE
Source organism: Photobacterium gaetbulicola Gung47
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-01-13
Authors: Nakajima, M., Motouchi, S., Nakai, H.
PDB entry 8xul: Structure of beta-1,2-glucanase from Xanthomonas campestris pv. campestris (beta-1,2-glucoheptasaccharide complex)-E239Q mutant
Classification: HYDROLASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-13
Authors: Nakajima, M., Motouchi, S., Nakai, H.
PDB entry 8xum: Structure of LGR4 with RSPO2
Classification: MEMBRANE PROTEIN
Source organism: Camelus bactrianus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-13
Authors: Wang, L., Geng, Y.
PDB entry 8xuo: Cryo-EM structure of tomato NRC2 dimer
Classification: PLANT PROTEIN
Source organism: Solanum lycopersicum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-01-13
Authors: Sun, Y., Ma, S.C., Chai, J.J.
PDB entry 8xup: Crystal structure of lipoprotein NlpI in complex with MepS
Classification: PROTEIN BINDING
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-01-13
Authors: Tzeng, S.R., Wang, S., Huang, C.H.
PDB entry 8xuq: Cryo-EM structure of tomato NRC2 tetramer
Classification: PLANT PROTEIN
Source organism: Solanum lycopersicum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-01-14
Authors: Sun, Y., Ma, S.C., Chai, J.J.
PDB entry 8xur: BA.2.86 Spike Trimer in complex with heparan sulfate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2024-01-14
Authors: Yue, C., Liu, P.
PDB entry 8xus: JN.1 Spike Trimer in complex with heparan sulfate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-01-14
Authors: Yue, C., Liu, P.
PDB entry 8xut: XBB.1.5 Spike Trimer in complex with heparan sulfate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-14
Authors: Yue, C., Liu, P., Mao, X.
PDB entry 8xuu: BA.2.86-T356K Spike Trimer in complex with heparan sulfate (Local refinement)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2024-01-14
Authors: Yue, C., Liu, P.
PDB entry 8xuv: Cryo-EM structure of tomato NRC2 filament
Classification: PLANT PROTEIN
Source organism: Solanum lycopersicum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-01-14
Authors: Sun, Y., Ma, S.C., Chai, J.J.
PDB entry 8xuw: Crystal Structure of the bromodomain of Fusarium graminearum GCN5
Classification: TRANSCRIPTION
Source organism: Gibberella zeae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2024-01-14
Authors: Li, L., Ran, T., Wang, W., Zhang, F.
PDB entry 8xux: Structure of the SARS-CoV-2 BA.2.86 spike protein (1-up state)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-01-14
Authors: Yajima, H., Anraku, Y., Kita, S., Kimura, K., Maenaka, K., Hashiguchi, T.
PDB entry 8xuy: Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up state)
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-01-14
Authors: Yajima, H., Anraku, Y., Kita, S., Kimura, K., Maenaka, K., Hashiguchi, T.
PDB entry 8xuz: Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up and 1-down state)
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-01-14
Authors: Yajima, H., Anraku, Y., Kita, S., Kimura, K., Maenaka, K., Hashiguchi, T.
PDB entry 8xv0: Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (up state)
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-14
Authors: Yajima, H., Anraku, Y., Kita, S., Kimura, K., Maenaka, K., Hashiguchi, T.
PDB entry 8xv1: Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (down state)
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-01-14
Authors: Yajima, H., Anraku, Y., Kita, S., Kimura, K., Maenaka, K., Hashiguchi, T.
PDB entry 8xv2: Thiamine-bound human SLC19A3
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-01-14
Authors: Dang, Y., Wang, G.P., Zhang, Z.
PDB entry 8xv3: Crystal structure of the catalytic domain of human PDE10A complexed with (2-((4-(5-(2-methylpyridin-4-yl)-3-(trifluoromethyl)-1H-pyrazol-1-yl)phenoxy)methyl)quinolin-4-yl)(2,6-diazaspiro[3.3]heptan-2-yl)methanone
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-14
Authors: Zhang, F.C., Huang, Y.Y., Luo, H.B., Guo, L.
PDB entry 8xv4: Crystal structure of TTD-PHD domain of UHRF1 in complex with mStella peptide (residues 85-119)
Classification: GENE REGULATION/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-01-14
Authors: Du, X., Gan, Q., Xu, J., Liu, J.
PDB entry 8xv5: Pyridoxamine-bound human SLC19A3
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-01-14
Authors: Dang, Y., Wang, G.P., Zhang, Z.
PDB entry 8xv6: Crystal structure of PHD domain of UHRF1 in complex with mStella peptide (residues 85-119)
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-01-14
Authors: Du, X., Gan, Q., Xu, J., Liu, J.
PDB entry 8xv7: Crystal structure of TTD-PHD domain of UHRF1 in complex with hStella peptide (residues 75-121)
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-01-14
Authors: Du, X., Gan, Q., Xu, J., Liu, J.
PDB entry 8xv8: Crystal structure of PHD domain of UHRF1 in complex with hStella peptide (residues 75-121)
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-01-14
Authors: Du, X., Gan, Q., Xu, J., Liu, J.
PDB entry 8xv9: Fedratinib-bound human SLC19A3
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-01-14
Authors: Dang, Y., Wang, G.P., Zhang, Z.
PDB entry 8xva: Human TOM complex with whole Tom20
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.92 Å
Deposited: 2024-01-14
Authors: Tian, X.Y., Su, J.Y., Sui, S.F.
PDB entry 8xvb: Cryo-EM structure of ATP-DNA-MuB filaments
Classification: VIRAL PROTEIN/DNA
Source organism: Escherichia phage Mu; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-01-14
Authors: Zhao, X., Zhang, K., Li, S.
PDB entry 8xvc: CryoEM structure of ADP-DNA-MuB conformation1
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Mu
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.32 Å
Deposited: 2024-01-14
Authors: Zhao, X., Zhang, K., Li, S.
PDB entry 8xvd: CryoEM structure of ADP-DNA-MuB conformation2
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Mu
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.43 Å
Deposited: 2024-01-14
Authors: Zhao, X., Zhang, K., Li, S.
PDB entry 8xve: Cryo-EM structure of ETBR bound with BQ3020
Classification: SIGNALING PROTEIN
Source organism: Clostridium perfringens; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-15
Authors: Hou, J.Y., Liu, S.H., Wu, L.J., Liu, Z.J., Hua, T.
PDB entry 8xvf: Globular domain of Trichinella spiralis calreticulin
Classification: CHAPERONE
Source organism: Trichinella spiralis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2024-01-15
Authors: Zhu, X.P., Jia, Z.H., Yu, W.
PDB entry 8xvg: Structure of human NuA4/TIP60 complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å
Deposited: 2024-01-15
Authors: Chen, K., Wang, L., Yu, Z., Yu, J., Ren, Y., Wang, Q., Xu, Y.
PDB entry 8xvh: Cryo-EM structure of ETBR bound with Endothelin1
Classification: SIGNALING PROTEIN
Source organism: Clostridium perfringens; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-01-15
Authors: Hou, J.Y., Liu, S.H., Wu, L.J., Liu, Z.J., Hua, T.
PDB entry 8xvi: Cryo-EM structure of ETAR bound with Endothelin1
Classification: SIGNALING PROTEIN
Source organism: Acetivibrio thermocellus ATCC 27405; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-01-15
Authors: Hou, J.Y., Liu, S.H., Wu, L.J., Liu, Z.J., Hua, T.
PDB entry 8xvj: Cryo-EM structure of ETAR bound with Macitentan
Classification: SIGNALING PROTEIN
Source organism: Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372); Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-01-15
Authors: Hou, J.Y., Liu, S.H., Wu, L.J., Liu, Z.J., Hua, T.
PDB entry 8xvk: Cryo-EM structure of ETAR bound with Ambrisentan
Classification: SIGNALING PROTEIN
Source organism: Acetivibrio thermocellus ATCC 27405; Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-01-15
Authors: Hou, J.Y., Liu, S.H., Wu, L.J., Liu, Z.J., Hua, T.
PDB entry 8xvl: Cryo-EM structure of ETAR bound with Zibotentan
Classification: SIGNALING PROTEIN
Source organism: Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372); Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-01-15
Authors: Hou, J.Y., Liu, S.H., Wu, L.J., Liu, Z.J., Hua, T.
PDB entry 8xvm: Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (3-up state)
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-01-15
Authors: Yajima, H., Anraku, Y., Kita, S., Kimura, K., Maenaka, K., Hashiguchi, T.
PDB entry 8xvn: Short-chain dehydrogenase/reductase6 (SDR6) from Antrodia camphorata
Classification: OXIDOREDUCTASE
Source organism: Taiwanofungus camphoratus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-15
Authors: Zhang, Y.Q., Zhang, M., Ye, M.
PDB entry 8xvo: Crystal structure of a short-chain dehydrogenase/reductase 16 (SDR16) from Antrodia camphorata
Classification: OXIDOREDUCTASE
Source organism: Taiwanofungus camphoratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.946 Å
Deposited: 2024-01-15
Authors: Zhang, Y.Q., Zhang, M., Ye, M.
PDB entry 8xvp: Crystal structure of inulosucrase from Lactobacillus reuteri 121
Classification: HYDROLASE
Source organism: Limosilactobacillus reuteri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-01-15
Authors: Ni, D., Hou, X., Cheng, M., Xu, W., Rao, Y., Mu, W.
PDB entry 8xvq: Crystal structure of inulosucrase from Lactobacillus reuteri 121 in complex with fructose
Classification: HYDROLASE
Source organism: Limosilactobacillus reuteri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2024-01-15
Authors: Ni, D., Hou, X., Cheng, M., Xu, W., Rao, Y., Mu, W.
PDB entry 8xvr: Crystal structure of inulosucrase from Lactobacillus reuteri 121 mutant R544W
Classification: HYDROLASE
Source organism: Limosilactobacillus reuteri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2024-01-15
Authors: Ni, D., Hou, X., Cheng, M., Xu, W., Rao, Y., Mu, W.
PDB entry 8xvs: RNA polymerase II elongation complex with downstream nucleosome extracted from human nuclei
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-01-15
Authors: Kujirai, T., Kato, J., Yamamoto, K., Hirai, S., Negishi, L., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8xvt: The core subcomplex of human NuA4/TIP60 complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-15
Authors: Chen, K., Wang, L., Yu, Z., Yu, J., Ren, Y., Wang, Q., Xu, Y.
PDB entry 8xvu: Structure of CXCR2 bound to CXCL2 (Ligand-receptor focused map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-01-15
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xvv: The TRRAP module of human NuA4/TIP60 complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-15
Authors: Chen, K., Wang, L., Yu, Z., Yu, J., Ren, Y., Wang, Q., Xu, Y.
PDB entry 8xvw: Crystal structure of N-terminal deletion mutant of Staphylococcal Thiol Peroxidase
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-01-15
Authors: Shukla, M., Maji, S., Yadav, V.K., Das, A.K., Bhattacharyya, S.
PDB entry 8xvx: Cryo-EM structure of OSCA1.2-DOPC-1:20-expanded state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-01-15
Authors: Zhang, Y., Han, Y.
PDB entry 8xvy: Cryo-EM structure of OSCA3.1-2E(R611E-R619E)-closed/open state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2024-01-15
Authors: Zhang, Y., Han, Y.
PDB entry 8xvz: Cryo-EM structure of OSCA3.1-2E(R611E-R619E)-closed/'desensitized' state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-01-15
Authors: Zhang, Y., Han, Y.
PDB entry 8xw0: Cryo-EM structure of OSCA3.1-GDN state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2024-01-15
Authors: Zhang, Y., Han, Y.
PDB entry 8xw1: Cryo-EM structure of OSCA1.2-V335W-DDM state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.49 Å
Deposited: 2024-01-15
Authors: Zhang, Y., Han, Y.
PDB entry 8xw2: Cryo-EM structure of OSCA1.2-DOPC-1:50-contracted state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2024-01-15
Authors: Zhang, Y., Han, Y.
PDB entry 8xw3: Cryo-EM structure of OSCA1.2-DOPC-1:50-expanded state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2024-01-15
Authors: Zhang, Y., Han, Y.
PDB entry 8xw4: Cryo-EM structure of TMEM63B-Digitonin state
Classification: PLANT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2024-01-15
Authors: Zhang, Y., Han, Y.
PDB entry 8xw5: Cryo-EM structure of the aspartate:alanine antiporter AspT mutant L60C
Classification: TRANSPORT PROTEIN
Source organism: Tetragenococcus halophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-01-16
Authors: Nanatani, K., Kanno, R., Kawabata, T., Watanabe, S., Hidaka, M., Yamanaka, T., Toda, K., Fujiki, T., Kunii, K., Miyamoto, A., Chiba, F., Ogasawara, S., Murata, T., Humbel, B.M., Inaba, K., Mitsuoka, K., Guan, L., Abe, K., Yamamoto, M., Koshiba, S.
PDB entry 8xw6: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and ATP
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-01-16
Authors: Nakashima, R., Taguchi, A.
PDB entry 8xw7: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and ADP
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-01-16
Authors: Nakashima, R., Taguchi, A.
PDB entry 8xw8: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and GDP
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-16
Authors: Nakashima, R., Taguchi, A.
PDB entry 8xw9: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and UDP
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-01-16
Authors: Nakashima, R., Taguchi, A.
PDB entry 8xwa: Structure of CXCR2 bound to CXCL1 (Ligand-receptor focused map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2024-01-16
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xwb: Crystal structure of dinitrosyl iron units binding with human heavy chain Ferritin
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-01-16
Authors: Gong, W.J., Wang, W.M., Wang, H.F.
PDB entry 8xwc: Crystal structure of human 8-oxoguanine glycosylase K249H mutant bound to the substrate 8-oxoguanine DNA at pH 8.0 under 277 K
Classification: DNA/HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-01-16
Authors: Unno, M., Koga, M., Minowa, N., Komuro, S., Tanaka, Y.
PDB entry 8xwd: Croy-EM structure of alpha synuclein fibril with EGCG
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-16
Authors: Li, X., Liu, C.
PDB entry 8xwf: Structure of CXCR2 bound to CXCL3 (Ligand-receptor focused map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-01-16
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xwg: OspA variants for thioflavin-T binding
Classification: UNKNOWN FUNCTION
Source organism: Borreliella burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-16
Authors: Makabe, K., Miura, Y.
PDB entry 8xwk: Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase from Herbaspillum huttiense (apo form)
Classification: OXIDOREDUCTASE
Source organism: Herbaspirillum huttiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2024-01-16
Authors: Akagashi, M., Watanabe, S.
PDB entry 8xwm: Structure of CXCR2 bound to CXCL6 (Ligand-receptor focused map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2024-01-16
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xwn: Structure of CXCR2 bound to CXCL8 (Ligand-receptor focused map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-01-16
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xwo: Vibrio harveyi chitoporin in complex with minocycline
Classification: TRANSPORT PROTEIN
Source organism: Vibrio harveyi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-01-16
Authors: Sanram, S., Suginta, W., Robinson, R.C.
PDB entry 8xwp: Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-01-16
Authors: Tani, K., Maki-Yonekura, S., Kanno, R., Negami, T., Hamaguchi, T., Hall, M., Mizoguchi, A., Humbel, B.M., Terada, T., Yonekura, K., Doi, T.
PDB entry 8xwq: Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-01-16
Authors: Tani, K., Maki-Yonekura, S., Kanno, R., Negami, T., Hamaguchi, T., Hall, M., Mizoguchi, A., Humbel, B.M., Terada, T., Yonekura, K., Doi, T.
PDB entry 8xwr: Crystal structure of SARS-CoV-2 3CLpro-T21I/L50F double mutant with its peptidyl substrate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-01-16
Authors: Zhang, L.J., Hu, Q.
PDB entry 8xws: Structure of CXCR2 bound to CXCL5 (Ligand-receptor focused map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-01-16
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xwt: Crystal structure of SARS-CoV-2 3CLpro-L50F mutant with its peptidyl substrate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-01-16
Authors: Zhang, L.J., Hu, Q.
PDB entry 8xwu: Crystal structure of human 8-oxoguanine glycosylase K249H mutant bound to the reaction intermediate derived from the crystal soaked into the solution at pH 4.0 under 277 K for 24 hourss
Classification: DNA/HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-01-16
Authors: Unno, M., Koga, M., Minowa, N., Komuro, S., Tanaka, Y.
PDB entry 8xwv: Structure of CXCR2 bound to CXCL1 (CXCR2-CXCL1-Go Full map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-01-16
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xww: Crystal structure of the catalytic domain of human PDE5A complexed with 2-(3-chlorobenzyl)-4-oxo-3,4-dihydroquinazoline-7-carboxylic acid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2024-01-16
Authors: Zhang, F.C., Huang, Y.Y., Luo, H.B., Wu, Y.Y.
PDB entry 8xwx: Crystal structure of FIS1-BAP31 complex from human
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-01-17
Authors: Nguyen, M.D., Bong, S.M., Lee, B.I.
PDB entry 8xwy: Structure of Interleukin-27
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-01-17
Authors: Feng, Y., Dong, X.C.
PDB entry 8xwz: Non-crystalline proximal tubulopathy and crystalline cast nephropathy-causing Bence-Jones protein PT-CN: An entire immunoglobulin kappa light chain dimer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-17
Authors: Ezawa, T., Otomo, R., Nozawa, K., Kyoya, S., Noguchi, K., Yohda, M., Odaka, M., Matsumura, H.
PDB entry 8xx0: Crystal structure of anti-IgE antibody HMK-12 Fab complexed with IgE F(ab')2
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-01-17
Authors: Hirano, T., Koyanagi, A., Kasai, M., Okumura, K.
PDB entry 8xx1: The Crystal Structure of MAPKAP kinase 2 domain from Biortus
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2024-01-17
Authors: Wang, F., Cheng, W., Lv, Z., Ju, C., Ni, C.
PDB entry 8xx3: Structure of CXCR2 bound to CXCL3 (CXCR2-CXCL3-Go Full map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-01-17
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xx4: ASFV RNAP elongation complex
Classification: TRANSCRIPTION/RNA/DNA
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-01-17
Authors: Zhu, G.L., Zhu, Y., Zhu, Z.X., Sun, F., Zheng, H.X.
PDB entry 8xx5: ASFV RNAP M1249L C-tail occupied complex1 (MCOC1)
Classification: TRANSCRIPTION
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-01-17
Authors: Zhu, G.L., Zhu, Y., Zhu, Z.X., Sun, F., Zheng, H.X.
PDB entry 8xx6: Structure of CXCR2 bound to CXCL8 (CXCR2-CXCL8-Go Full map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-01-17
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xx7: Structure of CXCR2 bound to CXCL5 (CXCR2-CXCL5-Go Full map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-01-17
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xx8: Structure of Glycilhalorhodopsin from Salinarimonas soli
Classification: MEMBRANE PROTEIN
Source organism: Salinarimonas soli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2024-01-17
Authors: Suzuki, K., Ishizuka, T., Konno, M., Inoue, K., Murata, T.
PDB entry 8xx9: Rhodothermus marinus alpha-amylase RmGH13_47A CBM48-A-B-C domains
Classification: HYDROLASE
Source organism: Rhodothermus marinus JCM 9785
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-01-18
Authors: Tonozuka, T.
PDB entry 8xxa: Rhodothermus marinus alpha-amylase RmGH13_47A CBM48-A-B-C domains in complex with branched pentasaccharide
Classification: HYDROLASE
Source organism: Rhodothermus marinus JCM 9785
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-01-18
Authors: Tonozuka, T.
PDB entry 8xxb: Crystal Structure of a triple-mutant (A69F/M124P/R127G) of halohydrin dehalogenase HheD8 complexed with chloride
Classification: HYDROLASE
Source organism: Thauera aminoaromatica S2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-18
Authors: Wan, N.W.
PDB entry 8xxc: DaCS-intermediate complex
Classification: TRANSFERASE
Source organism: Desulfurella acetivorans A63
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2024-01-18
Authors: Yang, L., Fang, Y.J.
PDB entry 8xxd: TtCS-citrate-CoA complex
Classification: TRANSFERASE
Source organism: Thermosulfidibacter takaii ABI70S6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-01-18
Authors: Yang, L., Fang, Y.J.
PDB entry 8xxe: TtCS-intermediate complex
Classification: TRANSFERASE
Source organism: Thermosulfidibacter takaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-01-18
Authors: Yang, L., Fang, Y.J.
PDB entry 8xxf: TtCS, oxaloacetate, acetyl-CoA complex
Classification: TRANSFERASE
Source organism: Thermosulfidibacter takaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-01-18
Authors: Yang, L., Fang, Y.J.
PDB entry 8xxg: Crystal structure of human 8-oxoguanine glycosylase K249H mutant bound to the reaction intermediate derived from the crystal soaked into the solution at pH 4.0 under 277 K for 2.5 hours
Classification: DNA/HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-01-18
Authors: Unno, M., Koga, M., Minowa, N., Tanaka, Y.
PDB entry 8xxh: Structure of CXCR2 bound to CXCL2 (CXCR2-CXCL2-Go Full map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-18
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xxi: Structure of y+LAT1 bound with Leu
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-01-18
Authors: Yan, R.H., Dai, L., Zhang, T.
PDB entry 8xxk: Crystal structure of human 8-oxoguanine glycosylase K249H mutant bound to the reaction intermediate derived from the crystal soaked into the solution at pH 4.0 under 298 K for 3 weeks
Classification: DNA/HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-01-18
Authors: Unno, M., Koga, M., Minowa, N., Komuro, S., Tanaka, Y.
PDB entry 8xxl: Cryo-EM structure of the human 40S ribosome with PDCD4
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-18
Authors: Ye, X., Huang, Z., Li, Y., Wang, M., Cheng, J.
PDB entry 8xxm: Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-18
Authors: Ye, X., Huang, Z., Li, Y., Wang, M., Cheng, J.
PDB entry 8xxn: Cryo-EM structure of the human 43S ribosome with PDCD4
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-01-18
Authors: Ye, X., Huang, Z., Li, Y., Wang, M., Cheng, J.
PDB entry 8xxp: ASFV RNAP core complex
Classification: TRANSCRIPTION
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-01-18
Authors: Zhu, G.L., Zhu, Y., Zhu, Z.X., Sun, F., Zheng, H.X.
PDB entry 8xxq: Structural of methylmalonate semialdehyde dehydrogenase ALDH6A1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-01-18
Authors: Su, G., Xu, Y., Luan, X.
PDB entry 8xxr: Structure of CXCR2 bound to CXCL6 (CXCR2-CXCL6-Go Full map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-01-18
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.