LiteFold/PDB huggingface dataset:
PDB entry 9q7y: Zymogen ADAM17- iRhom1 Cytoplasmic Deletion (365) Complex Bound by the MEDI3622 Fab
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2025-08-25
Authors: Seegar, T.M., Maciag, J.J., Ungvary, J.N.
PDB entry 9q7z: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.319 Å
Deposited: 2025-08-25
Authors: Werther, R., Stoddard, B.L.
PDB entry 9q80: Ku70/80 with Ku70 linker and SAP domain bound to a 153 bp H2AX nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2025-02-21
Authors: Hall, C., Chaplin, A.K.
PDB entry 9q83: Crystal structure of Lotus japonicus CHIP13 in complex with chitooctaose
Classification: PLANT PROTEIN
Source organism: Lotus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-02-21
Authors: Gysel, K., Andersen, K.R.
PDB entry 9q84: Crystal structure of Lotus japonicus CHIP13 extracellular domain in complex with chitooctaose
Classification: PLANT PROTEIN
Source organism: Lotus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-02-21
Authors: Gysel, K., Andersen, K.R.
PDB entry 9q85: PAM-bound Cas9-Cas1-Cas2-Csn2 supercomplex in the locked conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system
Classification: DNA BINDING PROTEIN
Source organism: Streptococcus thermophilus DGCC 7710; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2025-02-22
Authors: Sasnauskas, G., Gaizauskaite, U., Tamulaitiene, G.
PDB entry 9q86: McCP in complex with photocaged nitric oxide, 1.44 s, 9.5 microjoule, SSX
Classification: METAL BINDING PROTEIN
Source organism: Methylococcus capsulatus str. Bath
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-22
Authors: Smyth, P., Williams, L.J., Hough, M.A., Worrall, J.A.R., Owen, R.L.
PDB entry 9q87: Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
Classification: RIBOSOME
Source organism: Escherichia coli B; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.55 Å
Deposited: 2025-02-23
Authors: Leonarski, F., Henning-Knechtel, A., Kirmizialtin, S., Ennifar, E., Auffinger, P.
PDB entry 9q88: High-resolution structure of RNF38 RING domain
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-02-23
Authors: Gabrielsen, M., Buetow, L., Huang, D.T.
PDB entry 9q89: Crystal structure of the human METTL3-METTL14 in complex with small molecule inhibitor Compound 13
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-02-24
Authors: Dutheuil, G., Oukoloff, K.
PDB entry 9q8a: Crystal structure of the human METTL3-METTL14 in complex with small molecule inhibitor Compound 3
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-02-24
Authors: Dutheuil, G., Oukoloff, K.
PDB entry 9q8c: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment F02
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 2025-03-18
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9q8d: CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE WITH LIGAND
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-02-24
Authors: Grether, U., Edelmann, M., Gobbi, L., Hilbert, M., Huber, S., Leibrock, L., Benz, J.
PDB entry 9q8f: Structure of the (6-4) photolyase of Caulobacter crescentus with K48A mutation in its dark adapted and oxidized state determined by synchrotron
Classification: FLAVOPROTEIN
Source organism: Caulobacter vibrioides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-24
Authors: Po Hsun, W., Maestre-Reyna, M., Essen, L.-O.
PDB entry 9q8g: Crystal structure of the human METTL3-METTL14 in complex with small molecule inhibitor Compound 4 / EP102
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-02-24
Authors: Dutheuil, G., Oukoloff, K.
PDB entry 9q8h: SARS-CoV-2 methyltransferase nsp10-16 in complex with SAM and theophylline derivative BDH 34019023
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.802 Å
Deposited: 2025-02-24
Authors: Kremling, V., Sprenger, J., Turk, D., Oberthuer, D., Kiene, A.
PDB entry 9q8i: Cryo-EM structure of E. coli complex I variant V96P/N142M (NuoE)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2025-02-24
Authors: Seifermann, T., Wohlwend, D., Friedrich, T.
PDB entry 9q8j: CryoEM structure of modified Turnip Yellows Virus devoid of minor capsid protein readthrough domain
Classification: VIRUS
Source organism: Turnip yellows virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2025-02-24
Authors: Trapani, S., Lai Kee Him, J., Hoh, F., Brault, V., Bron, P.
PDB entry 9q8k: Synthetic bicyclic peptide
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-02-25
Authors: Xue, Y., Ek, M., Sandmark, J.
PDB entry 9q8l: Crystal Structure of 21A08Ap1-Fab in Complex with Human PD-1 at 1.85 angstrom Resolution
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-25
Authors: Murer, P., Petersen, L., Egli, N., Salazar, U., Neubert, P., Zurbach, A., Rau, A., Stocker, C., Katopodis, A., Huber, C., Carr, K., Arduin, A.
PDB entry 9q8n: Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 16)
Classification: MEMBRANE PROTEIN
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-02-25
Authors: Allyjaun, S., Newman, H., Chirgadze, D.Y., Hardwick, S.W., Hubbard, J., van den Berg, B., Dunbar, E.
PDB entry 9q8o: Crystal structure of Hsp82-MD in complex with the CS domain of Sgt1
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-25
Authors: Lopez, A., Napolitano, V., Delhommel, F., Popowicz, G.M., Sattler, M.
PDB entry 9q8q: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment E03
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2025-02-25
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9q8t: Nociceptive properties of U5-theraphotoxin-Hs1b, a novel peptide from the Cyriopagopus schmidti spider, active on NaV1.7 channel
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2025-02-25
Authors: Meudal, H., Landon, C.
PDB entry 9q8u: Complex of Caprine Serum Albumin with Cefaclor
Classification: TRANSPORT PROTEIN
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2025-02-25
Authors: Duszynski, K., Talaj, J.A., Bujacz, A., Bujacz, G.
PDB entry 9q8x: Ku70/80 bound to a 153 bp H2AX nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-02-25
Authors: Hall, C., Chaplin, A.K.
PDB entry 9q8y: Structure of RNF38 RING with linchpin mutant R454Y in complex with Ubch5B-Ub
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2025-02-25
Authors: Gabrielsen, M., Buetow, L., Huang, D.T.
PDB entry 9q8z: Human chondroitin sulfate polymerase complex CHSY3-CHPF
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-25
Authors: Dutta, P., Cordeiro, R.L., Wild, R.
PDB entry 9q90: CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-26
Authors: Ye, F., Gao, F., Zhang, X.
PDB entry 9q91: CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 6
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.2 Å
Deposited: 2025-02-26
Authors: Gao, F., Zhang, X.
PDB entry 9q92: CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 5
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2025-02-26
Authors: Gao, F., Zhang, X.
PDB entry 9q93: CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 4
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2025-02-26
Authors: Gao, F., Zhang, X.
PDB entry 9q94: CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 3
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2025-02-26
Authors: Gao, F., Zhang, X.
PDB entry 9q95: CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -10 to -1
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2025-02-26
Authors: Gao, F., Zhang, X.
PDB entry 9q96: Cryo-EM Structure of Bacterial RNA polymerase-sigma54 transcription open complex with wild type sigma54, from RPi(-10-1)
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2025-02-26
Authors: Gao, F., Zhang, X.
PDB entry 9q97: CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 2
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2025-02-26
Authors: Gao, F., Zhang, X.
PDB entry 9q98: CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 1
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.3 Å
Deposited: 2025-02-26
Authors: Gao, F., Zhang, X.
PDB entry 9q9a: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment C06 and CX-4945 (Silmitasertib)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2025-02-26
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9q9b: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment C07 and CX-4945 (Silmitasertib)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-02-26
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9q9c: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment D04
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-02-26
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9q9d: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment D06 and CX-4945 (Silmitasertib)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.89 Å
Deposited: 2025-02-26
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9q9e: Crystal structure of a TELSAM-SUMO1 fusion protein
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-02-26
Authors: Coste, F., Mishra, A., Suskiewicz, M.J.
PDB entry 9q9f: DNA-PK bound to a 153 bp H2AX nucleosome model 1
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.54 Å
Deposited: 2025-02-26
Authors: Hall, C., Chaplin, A.K.
PDB entry 9q9g: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment D10
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.94 Å
Deposited: 2025-02-26
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9q9h: Cryo-EM structure of human Mre11-Rad50 complex bound to DNA
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-02-26
Authors: Cui, H.J., Lammens, K., Hopfner, K.P., Fan, Y.L., Kuybu, F.
PDB entry 9q9i: Cryo-EM structure of human Mre11-Rad50-Nbs1 complex bound to DNA
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-02-26
Authors: Cui, H.J., Lammens, K., Hopfner, K.P., Fan, Y.L., Kuybu, F.
PDB entry 9q9j: Cryo-EM structure of human Mre11-Rad50-Nbs1 (MRN) complex bound to DNA and telomeric factor TRF2 fragment (438-542)
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2025-02-26
Authors: Cui, H.J., Lammens, K., Hopfner, K.P., Fan, Y.L., Kuybu, F.
PDB entry 9q9k: Cryo-EM structure of human Mre11-Rad50 (MR) complex bound to DNA and telomeric factor TRF2 fragment (438-542)
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-02-26
Authors: Cui, H.J., Lammens, K., Hopfner, K.P., Fan, Y.L., Kuybu, F.
PDB entry 9q9l: HSV-1 prefusion glycoprotein B
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain 17
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2025-02-26
Authors: Vollmer, B., Mulvaney, T., Ebel, H., Nentwig, J., Gruenewald, K.
PDB entry 9q9m: Cryo-EM structure of human Mre11-Rad50-Nbs1 (MRN) complex bound to DNA and telomeric factor TRF2
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-02-26
Authors: Cui, H.J., Lammens, K., Hopfner, K.P., Fan, Y.L., Kuybu, F.
PDB entry 9q9n: HSV-1 prefusion glycoprotein B bound by Nb1_gbHSV
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain 17; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-26
Authors: Vollmer, B., Mulvaney, T., Ebel, H., Nentwig, J., Gruenewald, K.
PDB entry 9q9o: TRIM21 PRYSPRY bound to compound 36
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.462 Å
Deposited: 2025-02-26
Authors: Luptak, J.
PDB entry 9q9p: TRIM21 PRYSPRY bound to compound 37
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-26
Authors: Luptak, J.
PDB entry 9q9q: TRIM21 PRYSPRY bound to compound 38
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.253 Å
Deposited: 2025-02-26
Authors: Luptak, J.
PDB entry 9q9r: TRIM21 PRYSPRY bound to compound 209
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.331 Å
Deposited: 2025-02-26
Authors: Luptak, J.
PDB entry 9q9s: HSV-2 prefusion glycoprotein B bound by Nb1_gbHSV
Classification: VIRAL PROTEIN
Source organism: Human herpesvirus 2 strain 333; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-02-26
Authors: Vollmer, B., Mulvaney, T., Ebel, H., Nentwig, J., Gruenewald, K.
PDB entry 9q9u: X ray Structure of the Superantigen Staphylococcal Enterotoxin L (SEL)
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2025-02-26
Authors: Marino, S.F.
PDB entry 9q9v: Crystal structure of Borrelia burgdorferi BB0238-BB0323 complex
Classification: STRUCTURAL PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2025-02-26
Authors: Brangulis, K.
PDB entry 9q9z: Cryo-EM structure of the helicase core of ZNFX1
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-02-27
Authors: Grabarczyk, D.B., Reznikow, V., Kurzbauer, R., Clausen, T.
PDB entry 9qa0: Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with IW dipeptide
Classification: HYDROLASE
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-27
Authors: Zukowska, J., Gregory, K.S., Acharya, K.R.
PDB entry 9qa1: Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with VW dipeptide
Classification: HYDROLASE
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-27
Authors: Zukowska, J., Gregory, K.S., Acharya, K.R.
PDB entry 9qa2: Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with RW dipeptide
Classification: HYDROLASE
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-27
Authors: Zukowska, J., Gregory, K.S., Acharya, K.R.
PDB entry 9qa3: Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with YW dipeptide
Classification: HYDROLASE
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-27
Authors: Zukowska, J., Gregory, K.S., Acharya, K.R.
PDB entry 9qa4: Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with WR dipeptide
Classification: HYDROLASE
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-27
Authors: Zukowska, J., Gregory, K.S., Acharya, K.R.
PDB entry 9qa5: Structure of the N-SH2 domain of SHP2 in complex with the phosphoY627-Gab1 (613-651) peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-02-27
Authors: Machner, L., Breithaupt, C., Kniest, J., Parthier, C., Feller, S.M., Stubbs, M.T.
PDB entry 9qa6: Cryo-EM structure of Thomasclavelia ramosa IgA peptidase (IgAse) active site mutant (S32-N876)
Classification: HYDROLASE
Source organism: Thomasclavelia ramosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-02-27
Authors: Ramirez-Larrota, J.S., Eckhard, U., Guerra, P., Juyoux, P., Gomis-Ruth, F.X.
PDB entry 9qa7: Oxidised FeSII from Azotobacter beijerinckii
Classification: ELECTRON TRANSPORT
Source organism: Azotobacter beijerinckii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2025-02-27
Authors: Schmidt, A., Murray, J.W.
PDB entry 9qaa: Crystal structure of Borrelia burgdorferi BB0238-BB0323 complex (BB0238 residues 118-256; BB0323 residues 26-210)
Classification: STRUCTURAL PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-02-27
Authors: Brangulis, K.
PDB entry 9qab: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment E11 and CX-4945 (Silmitasertib)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2025-02-28
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9qac: Crystal structure of the SMARCA2 bromodomain bound to a fragment screening hit
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-02-28
Authors: Schimpl, M.
PDB entry 9qad: Crystal structure of the SMARCA2 bromodomain bound to a tricyclic pyrimidoindolone inhibitor (compound 17)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-02-28
Authors: Schimpl, M.
PDB entry 9qaf: Yeast 20S proteasome mutant: beta5_T3M
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-02-28
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qag: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment F08 and CX-4945 (Silmitasertib)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2025-02-28
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9qai: Yeast 20S proteasome mutant: beta5_T3M in complex with MG132
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-02-28
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qaj: Structure of the nucleosome-bound human BCL7A
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-02-28
Authors: Martin, F., Bergamin, E.
PDB entry 9qak: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment G07
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2025-02-28
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9qal: Solution NMR structure of Arkadia 2 RING domain
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-02-28
Authors: Marousis, K.D., Giannari, D., Seliami, A., Politi, M., Birkou, M., Bentrop, D., Episkopou, V., Spyroulias, G.A.
PDB entry 9qam: Human angiotensin-1 converting enzyme C-domain in complex with ciprofloxacin
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qan: Human angiotensin-1 converting enzyme C-domain in complex with ramiprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qao: Human angiotensin-1 converting enzyme C-domain in complex with trandolaprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qap: Human angiotensin-1 converting enzyme C-domain in complex with quinaprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qaq: Human angiotensin-1 converting enzyme C-domain in complex with perindoprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qar: Human angiotensin-1 converting enzyme N-domain in complex with ramiprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qas: Human angiotensin-1 converting enzyme N-domain in complex with trandolaprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qat: Human angiotensin-1 converting enzyme N-domain in complex with quinaprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qau: Human angiotensin-1 converting enzyme N-domain in complex with perindoprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qav: Human angiotensin-1 converting enzyme N-domain in complex with enalaprilat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-28
Authors: Gregory, K.S., Acharya, K.R.
PDB entry 9qaw: CryoEM structure of the human LRP2 receptor ectodomain in complex with LRPAP1
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-02-28
Authors: Ramanadane, K., Coscia, F.
PDB entry 9qax: The catalytic core with C2 symmetry of human telomerase dimer
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-28
Authors: Balch, S., Sekne, Z., Franco-Echevarria, E., Ludzia, P., Kretsch, R.C., Sun, W., Yu, H., Ghanim, G.E., Sigurdur, T.R., Ding, Y., Das, R., Nguyen, T.H.D.
PDB entry 9qay: Catalytic core 1 of dimeric human telomerase
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-28
Authors: Balch, S., Sekne, Z., Franco-Echevarria, E., Ludzia, P., Kretsch, R.C., Sun, W., Yu, H., Ghanim, G.E., Sigurdur, T.R., Ding, Y., Das, R., Nguyen, T.H.D.
PDB entry 9qaz: Catalytic core 2 of dimeric human telomerase
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-28
Authors: Balch, S., Sekne, Z., Franco-Echevarria, E., Ludzia, P., Kretsch, R.C., Sun, W., Yu, H., Ghanim, G.E., Sigurdur, T.R., Ding, Y., Das, R., Nguyen, T.H.D.
PDB entry 9qb0: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment H07
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2025-02-28
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9qb1: Yeast 20S proteasome mutant: beta5_T3M in complex with Bortezomib
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-02-28
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qb2: H/ACA RNP protomer of human telomerase dimer
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-28
Authors: Balch, S., Sekne, Z., Franco-Echevarria, E., Ludzia, P., Kretsch, R.C., Sun, W., Yu, H., Ghanim, G.E., Sigurdur, T.R., Ding, Y., Das, R., Nguyen, T.H.D.
PDB entry 9qb3: Dimer structure of H/ACA RNP lobe of human telomerase
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-02-28
Authors: Balch, S., Sekne, Z., Franco-Echevarria, E., Ludzia, P., Kretsch, R.C., Sun, W., Yu, H., Ghanim, G.E., Sigurdur, T.R., Ding, Y., Das, R., Nguyen, T.H.D.
PDB entry 9qb4: Yeast 20S proteasome mutant: beta5_T3M in complex with Carfilzomib
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-02-28
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qb5: AP2-associated protein kinase 1 (AAK1) bound to CKJB68
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-28
Authors: Preuss, F., Mensing, T.E., Hanke, T., Knapp, S., Mathea, S.
PDB entry 9qb6: Protein kinase CK2 catalytic subunit alpha' (CSNK2A2 gene product) in complex with F2X-Entry screen fragment H02 and CX-4945 (Silmitasertib)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2025-02-28
Authors: Werner, C., Harasimowicz, H., Barthel, T., Weiss, M.S., Niefind, K.
PDB entry 9qb7: Structure of rat Phospholipase C gamma 1 mutant S345F
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2025-02-28
Authors: Pinotsis, N., Katan, M., Lalovic, D., Gregory, A.
PDB entry 9qb8: Lymphostatin - Conformation II - pH 8 Hepes
Classification: TOXIN
Source organism: Escherichia coli O127:H6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-28
Authors: Bottcher, B., Schneider, R., Griessmann, M., Ramussen, T.
PDB entry 9qb9: CK2, catalytic subunit alpha' (CSNK2A2 gene product) in complex with a heparin-derived trisaccharide and the ATP-competitive inhibitor 4w
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2025-03-01
Authors: Werner, C., Harasimowicz, H., Weiss, M.S., Niefind, K.
PDB entry 9qba: Human TRIM21 PRYSPRY domain in complex with AL236
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-03-01
Authors: Kim, Y., Lucic, A., Knapp, S., Kraemer, A., Structural Genomics Consortium (SGC)
PDB entry 9qbb: Lymphostatin - Conformation III - pH 8
Classification: TOXIN
Source organism: Escherichia coli O127:H6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-01
Authors: Bottcher, B., Schneider, R., Griessmann, M., Ramussen, T.
PDB entry 9qbc: Crystal structure of Brachyspira hampsonii PadR
Classification: DNA BINDING PROTEIN
Source organism: Brachyspira hampsonii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-03-02
Authors: Thunnissen, A.M.W.H., Rozeboom, H.J., Brouwer, B., Roelfes, G.
PDB entry 9qbd: Crystal structure of Brachyspira hampsonii PadR with Leu88 replaced by 3-aminotyrosine
Classification: DNA BINDING PROTEIN
Source organism: Brachyspira hampsonii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-02
Authors: Thunnissen, A.M.W.H., Brouwer, B., Roelfes, G.
PDB entry 9qbe: Yeast 20S proteasome mutant: beta5_T3M in complex with ONX0914
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-03-02
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qbf: HER2/ErbB2 extracellular domain (ECD) in compact conformation in complex with trastuzumab (TZB) antibody
Classification: SIGNALING PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-03-02
Authors: Gragera, M., Buschiazzo, A., Vacca, S.
PDB entry 9qbg: HER2/ErbB2 extracellular domain (ECD) in extended conformation in complex with trastuzumab (TZB) antibody
Classification: SIGNALING PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-02
Authors: Gragera, M., Buschiazzo, A., Vacca, S.
PDB entry 9qbh: HER2/ErbB2 extracellular domain (ECD) from a near full-length construct solubilized in amphipols.
Classification: SIGNALING PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2025-03-02
Authors: Gragera, M., Buschiazzo, A., Vacca, S.
PDB entry 9qbi: Yeast 20S proteasome mutant: beta5_G128V (b5-propeptide in trans)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-03-03
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qbj: Legobody dimer
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli; Mus musculus; Staphylococcus aureus subsp. aureus N315; Streptococcus sp. 'group G'; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-03
Authors: Pacesa, M., Van Hall-Beauvais, A., Marchand, A., Georgeon, S., Correia, B.E.
PDB entry 9qbl: Crystal structure of Xanthobacter autotrophicus SPARDA mutant lacking DREN nuclease domains
Classification: RNA BINDING PROTEIN
Source organism: Xanthobacter autotrophicus Py2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-03-03
Authors: Manakova, E.N., Grazulis, S., Zaremba, M.
PDB entry 9qbm: X-ray structure of the drug binding domain of AlbA in complex with the KMR-04-177 compound of the pyrrolobenzodiazepines class
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2025-03-03
Authors: Di Palma, M., Steiner, R.A.
PDB entry 9qbn: Crystal structure of the polyester hydrolase Leipzig 7 (PHL7) mut3 variant with glycosylation by expression in Pichia pastoris (P_PHL7mut3)
Classification: HYDROLASE
Source organism: compost metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-03-03
Authors: Useini, A., Strater, N., Striedner, G., Sonnendecker, C.
PDB entry 9qbo: Yeast 20S proteasome mutant: beta5_G128V (b5-propeptide in trans) in complex with MG132
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-03-03
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qbp: Crystal structure of Enhydrobacter aerosaccus apo SPARDA complex
Classification: RNA BINDING PROTEIN
Source organism: Enhydrobacter aerosaccus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-03-03
Authors: Manakova, E.N., Grazulis, S., Zaremba, M.
PDB entry 9qbq: Crystal structure of apo SPARDA complex from Xanthobacter autotrophicus
Classification: RNA BINDING PROTEIN
Source organism: Xanthobacter autotrophicus Py2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-03-03
Authors: Manakova, E.N., Grazulis, S., Zaremba, M.
PDB entry 9qbr: CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tuberculosis COMPLEXED WITH L-LYSINE AND INHIBITOR DDD01991231
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-03-03
Authors: Dawson, A., Cleghorn, L.A.T., Davis, S.H.
PDB entry 9qbs: KEAP1 complexed to cyclic peptide 33
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-03-03
Authors: Ji, X., Lau, K.
PDB entry 9qbt: KEAP1 complexed to cyclic peptide 34
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.334 Å
Deposited: 2025-03-03
Authors: Ji, X., Lau, K.
PDB entry 9qbu: Crystal structure of WRN in complex with (S)-27 (GSK5819992)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-03
Authors: Chaikuad, A., Chung, C.-W.
PDB entry 9qbv: Crystal structure of WRN in complex with (R)-11 (GSK4766470)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-03-03
Authors: Chaikuad, A., Concha, N., Chung, C.-W.
PDB entry 9qbw: Yeast 20S proteasome mutant: beta5_G128V (b5-propeptide in trans) in complex with Carfilzomib
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-03-03
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qbx: Crystal structure of an atypical fungal aspartate/glutamate racemase family member OpaE
Classification: ISOMERASE
Source organism: Aspergillus ustus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-03-04
Authors: Zheng, X., Zheng, L., Bange, G.
PDB entry 9qby: Yeast 20S proteasome mutant: beta5_G128V (b5-propeptide in trans) in complex with ONX0914
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-03-04
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qc1: Crystal structure of the neurotensin receptor 1 in complex with the small-molecule full agonist cp28a
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.124 Å
Deposited: 2025-03-04
Authors: Deluigi, M., Hilge, M., Plueckthun, A.
PDB entry 9qc2: BV333 aminotransferase from Streptomyces sp. mutant W89A
Classification: TRANSFERASE
Source organism: Streptomyces sp. BV333
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2025-03-04
Authors: De Rose, S.A., Isupov, M.N., Patti, S.
PDB entry 9qc3: CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tuberculosis COMPLEXED WITH L-LYSINE AND INHIBITOR DDD01993593
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-03-04
Authors: Dawson, A., Cleghorn, L.A.T., Davis, S.H.
PDB entry 9qc4: CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tuberculosis COMPLEXED WITH L-LYSINE AND INHIBITOR DDD01869767
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2025-03-04
Authors: Dawson, A., Cleghorn, L.A.T., Davis, S.H.
PDB entry 9qc7: BoNT-NTNH complex from Clostridium botulinum Serotype B1
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-03-04
Authors: Krc, A., Persson Kosenina, S., Masuyer, G., Stenmark, P.
PDB entry 9qc8: BoNT-NTNH-HA70 complex from Clostridium botulinum Serotype B1
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-04
Authors: Krc, A., Persson Kosenina, S., Masuyer, G., Stenmark, P.
PDB entry 9qc9: Yeast 20S proteasome double mutant: beta5_F(-46)S / beta5_G128V
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-03-04
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qca: PRMT2 in complex with MMA analog
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-03-04
Authors: Cura, V., Dursun, E., Troffer, N., Cavarelli, J.
PDB entry 9qcc: Activated XauSPARDA filament assembly with bound dsDNA substrate
Classification: RNA BINDING PROTEIN
Source organism: Xanthobacter autotrophicus Py2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-04
Authors: Manakova, E.N., Zaremba, M., Jurgelaitis, E.
PDB entry 9qcd: Micro-ED structure of the NSH2-CSH2 tandem domain of SHP2 in complex with the bis-phosphorylated pY627-pY659-Gab1 (613-694) peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.2 Å
Deposited: 2025-03-04
Authors: Machner, L., Shaikhqasem, A., Hamdi, F., Breithaupt, C., Parthier, C., Kyrilis, F.L., Kastritis, P.L., Feller, S.M., Stubbs, M.T.
PDB entry 9qce: HA70-HA17-HA33 complex from Clostridium botulinum Serotype B1
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-03-04
Authors: Krc, A., Persson Kosenina, S., Masuyer, G., Stenmark, P.
PDB entry 9qcf: Yeast 20S proteasome mutant: beta1_G128V
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-03-04
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qcg: Crystal structure of Methanopyrus kandleri malate dehydrogenase mutant 4 at room temperature
Classification: OXIDOREDUCTASE
Source organism: Methanopyrus kandleri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-03-04
Authors: Coquille, S., Madern, D.
PDB entry 9qch: Complex of Ovine Serum Albumin with Cephalosporin C
Classification: TRANSPORT PROTEIN
Source organism: Ovis aries
Experimental method: X-RAY DIFFRACTION
Resolution: 2.198 Å
Deposited: 2025-03-04
Authors: Duszynski, K., Talaj, J.A., Bujacz, A., Bujacz, G.
PDB entry 9qci: Crystal structure of PhoC mutant acid phosphatase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Morganella morganii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-04
Authors: Levy, C.W., Ortmayer, M.
PDB entry 9qcj: Crystal structure of PhoC wild type acid phosphatase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Morganella morganii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2025-03-04
Authors: Levy, C.W., Ortmayer, M.
PDB entry 9qck: Yeast 20S proteasome mutant: beta1_G128V (b1-propeptide deleted)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-03-04
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qcl: S.aureus ClpC tetradecameric resting state
Classification: CHAPERONE
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-03-04
Authors: Engelhardt, L., Carroni, M.
PDB entry 9qcm: Botulinum neurotoxin type B1, 14-subunit, Large Progenitor Toxin Complex (L-PTC)
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-04
Authors: Krc, A., Persson Kosenina, S., Masuyer, G., Stenmark, P.
PDB entry 9qcn: HA70 complex from Clostridium botulinum Serotype B1
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-03-04
Authors: Krc, A., Persson Kosenina, S., Masuyer, G., Stenmark, P.
PDB entry 9qco: NTNH-HA70 complex from Clostridium botulinum Serotype B1
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-03-04
Authors: Krc, A., Persson Kosenina, S., Masuyer, G., Stenmark, P.
PDB entry 9qcr: DNA-PK bound to 153 bp H2AX nucleosome model 2
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.37 Å
Deposited: 2025-03-05
Authors: Hall, C., Chaplin, A.
PDB entry 9qcs: Ku80 mediated DNA-PK dimer bound to 153 bp H2AX nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.38 Å
Deposited: 2025-03-05
Authors: Hall, C., Chaplin, A.K.
PDB entry 9qct: Crystal structure of Rhizobium etli L-asparaginase ReAV R47A mutant
Classification: HYDROLASE
Source organism: Rhizobium etli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-05
Authors: Pokrywka, K., Grzechowiak, M., Loch, J.I., Ruszkowski, M., Gilski, M., Jaskolski, M.
PDB entry 9qcu: Crystal structure of Rhizobium etli L-asparaginase ReAV S48A mutant
Classification: HYDROLASE
Source organism: Rhizobium etli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-03-05
Authors: Pokrywka, K., Grzechowiak, M., Loch, J.I., Ruszkowski, M., Gilski, M., Jaskolski, M.
PDB entry 9qcv: Cryo-EM structure of CAK-CDK2-cyclin A2 bound to AMP-PNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-03-05
Authors: Cushing, V.I., Greber, B.J., McGeoch, A.J.S., Feng, J.
PDB entry 9qcw: Crystal structure of Rhizobium etli L-asparaginase ReAV K51A mutant
Classification: HYDROLASE
Source organism: Rhizobium etli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-03-05
Authors: Pokrywka, K., Grzechowiak, M., Loch, J.I., Ruszkowski, M., Gilski, M., Jaskolski, M.
PDB entry 9qcx: Cryo-EM structure of apo-CAK-CDK2-cyclin A2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-03-05
Authors: Cushing, V.I., Greber, B.J., McGeoch, A.J.S., Feng, J.
PDB entry 9qcy: Crystal structure of Rhizobium etli L-asparaginase ReAV S80A mutant
Classification: HYDROLASE
Source organism: Rhizobium etli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-05
Authors: Pokrywka, K., Grzechowiak, M., Loch, J.I., Ruszkowski, M., Gilski, M., Jaskolski, M.
PDB entry 9qcz: Crystal structure of Rhizobium etli L-asparaginase ReAV K263A mutant
Classification: HYDROLASE
Source organism: Rhizobium etli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-05
Authors: Pokrywka, K., Grzechowiak, M., Loch, J.I., Ruszkowski, M., Gilski, M., Jaskolski, M.
PDB entry 9qd0: Structure of Beilong paramyxovirus receptor binding protein
Classification: VIRAL PROTEIN
Source organism: Jeilongvirus beilongi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-03-05
Authors: Stelfox, A.J., Bowden, T.A.
PDB entry 9qd1: Structure of J paramyxovirus virus receptor binding protein
Classification: VIRAL PROTEIN
Source organism: J virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-03-05
Authors: Stelfox, A.J., Bowden, T.A.
PDB entry 9qd2: Yeast 20S proteasome mutant: beta1_G128V (b1-propeptide deleted) in complex with MG132
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-03-05
Authors: Huber, E.M., Heinemeyer, W., Groll, M.
PDB entry 9qd3: Gluthathion-S-Transferase StyI of Gordonia rubripertincta CWB2
Classification: TRANSFERASE
Source organism: Gordonia rubripertincta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-05
Authors: Burnik, J., Lienkamp, A.C., Hofmann, E., Tischler, D.