LiteFold/PDB huggingface dataset:
PDB entry 3df8: The crystal structure of a possible HxlR family transcriptional factor from Thermoplasma volcanium GSS1
Classification: TRANSCRIPTION
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2008-06-11
Authors: Tan, K., Tesar, C., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3df9: Crystal structure of E. coli MTA/SAH nucleosidase in complex with BnT-DADMeImmA
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2008-06-11
Authors: Siu, K.K.W., Howell, P.L.
PDB entry 3dfa: Crystal structure of kinase domain of calcium-dependent protein kinase cgd3_920 from Cryptosporidium parvum
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2008-06-11
Authors: Wernimont, A.K., Lew, J., Lin, Y.H., Hassanali, A., Khuu, C., Alam, Z., Kozieradzki, I., Cossar, D., Bochkarev, A., Arrowsmith, C.H., Bountra, C., Wilkstrom, M., Edwards, A.M., Hui, R., Artz, J.D., Xiao, T., Structural Genomics Consortium (SGC)
PDB entry 3dfc: Crystal structure of a glycine-rich loop mutant of the death associated protein kinase catalytic domain with AMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-06-11
Authors: McNamara, L.K., Schavocky, J.P., Watterson, D.M., Brunzelle, J.S.
PDB entry 3dfe: Crystal structure of a Putative Pii-Like Signaling Protein (YP_323533.1) from ANABAENA VARIABILIS ATCC 29413 at 2.35 A resolution
Classification: SIGNALING PROTEIN
Source organism: Anabaena variabilis ATCC 29413
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2008-06-11
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3dff: The crystal structure of teicoplanin pseudoaglycone deacetylase Orf2
Classification: HYDROLASE
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-11
Authors: Zou, Y., Brunzelle, J.S., Nair, S.K.
PDB entry 3dfg: Crystal Structure of RecX: A Potent Inhibitor Protein of RecA from Xanthomonas campestris
Classification: RECOMBINATION
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-06-12
Authors: Yang, C.Y.
PDB entry 3dfh: crystal structure of putative mandelate racemase / muconate lactonizing enzyme from Vibrionales bacterium SWAT-3
Classification: ISOMERASE
Source organism: Vibrionales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-06-12
Authors: Malashkevich, V.N., Toro, R., Wasserman, S.R., Meyer, A.J., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3dfi: The crystal structure of antimicrobial reagent A40926 pseudoaglycone deacetylase Dbv21
Classification: HYDROLASE
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-12
Authors: Zou, Y., Brunzelle, J.S., Nair, S.K.
PDB entry 3dfj: Crystal structure of human Prostasin
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2008-06-12
Authors: Su, H.P., Rickert, K.W., Darke, P.L., Munshi, S.K.
PDB entry 3dfk: The crystal structure of teicoplanin pseudoaglycone deacetylase Orf2* bound to one of its products decanoic acid
Classification: HYDROLASE
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-12
Authors: Zou, Y., Brunzelle, J.S., Nair, S.K.
PDB entry 3dfl: Crystal structure of human Prostasin complexed to 4-guanidinobenzoic acid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-12
Authors: Su, H.P., Rickert, K.W., Darke, P.L., Munshi, S.K.
PDB entry 3dfm: The crystal structure of the zinc inhibited form of teicoplanin deacetylase Orf2
Classification: HYDROLASE
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2008-06-12
Authors: Zou, Y., Brunzelle, J.S., Nair, S.K.
PDB entry 3dfn: D33N mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Classification: LYASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2008-06-12
Authors: St-Jean, M., Sygusch, J.
PDB entry 3dfo: Dihydroxyacetone phosphate Schiff base and enamine intermediates in D33N mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Classification: LYASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2008-06-12
Authors: St-Jean, M., Sygusch, J.
PDB entry 3dfp: Phosphate ions in D33N mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Classification: LYASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2008-06-12
Authors: St-Jean, M., Sygusch, J.
PDB entry 3dfq: D33S mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Classification: LYASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2008-06-12
Authors: St-Jean, M., Sygusch, J.
PDB entry 3dfr: CRYSTAL STRUCTURES OF ESCHERICHIA COLI AND LACTOBACILLUS CASEI DIHYDROFOLATE REDUCTASE REFINED AT 1.7 ANGSTROMS RESOLUTION. I. GENERAL FEATURES AND BINDING OF METHOTREXATE
Classification: OXIDOREDUCTASE
Source organism: Lactobacillus casei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 1982-06-25
Authors: Filman, D.J., Matthews, D.A., Bolin, J.T., Kraut, J.
PDB entry 3dfs: Dihydroxyacetone phosphate Schiff base intermediate in D33S mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Classification: LYASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2008-06-12
Authors: St-Jean, M., Sygusch, J.
PDB entry 3dft: Phosphate ions in D33S mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Classification: LYASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2008-06-12
Authors: St-Jean, M., Sygusch, J.
PDB entry 3dfu: CRYSTAL STRUCTURE OF A PUTATIVE ROSSMANN-LIKE DEHYDROGENASE (CGL2689) FROM CORYNEBACTERIUM GLUTAMICUM AT 2.07 A RESOLUTION
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2008-06-12
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3dfv: Adjacent GATA DNA binding
Classification: Transcription/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2008-06-12
Authors: Bates, D.L., Kim, G.K., Guo, L., Chen, L.
PDB entry 3dfx: Opposite GATA DNA binding
Classification: Transcription/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-12
Authors: Bates, D.L., Kim, G.K., Guo, L., Chen, L.
PDB entry 3dfy: Crystal structure of apo dipeptide epimerase from Thermotoga maritima
Classification: ISOMERASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-12
Authors: Fedorov, A.A., Fedorov, E.V., Imker, H.J., Gerlt, J.A., Almo, S.C.
PDB entry 3dfz: SirC, precorrin-2 dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-06-12
Authors: Schubert, H.L., Hill, C.P., Warren, M.J.
PDB entry 3dg0: Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complex
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.8 Å
Deposited: 2008-06-12
Authors: Gao, H., LeBarron, J., Frank, J.
PDB entry 3dg1: Segment SSTNVG derived from IAPP
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2008-06-12
Authors: Wiltzius, J.J., Sievers, S.A., Sawaya, M.R., Cascio, D., Eisenberg, D.
PDB entry 3dg2: Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of a pretranslocation complex
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2008-06-12
Authors: Gao, H., LeBarron, J., Frank, J.
PDB entry 3dg3: Crystal structure of muconate lactonizing enzyme from Mucobacterium Smegmatis
Classification: ISOMERASE
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-12
Authors: Fedorov, A.A., Fedorov, E.V., Sakai, A., Gerlt, J.A., Almo, S.C.
PDB entry 3dg4: Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complex
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.8 Å
Deposited: 2008-06-12
Authors: Gao, H., LeBarron, J., Frank, J.
PDB entry 3dg5: Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF3-bound termination complex
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 15.5 Å
Deposited: 2008-06-12
Authors: Gao, H., LeBarron, J., Frank, J.
PDB entry 3dg6: Crystal structure of muconate lactonizing enzyme from Mucobacterium Smegmatis complexed with muconolactone
Classification: ISOMERASE
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-12
Authors: Fedorov, A.A., Fedorov, E.V., Sakai, A., Gerlt, J.A., Almo, S.C.
PDB entry 3dg7: Crystal structure of muconate lactonizing enzyme from Mucobacterium Smegmatis complexed with muconolactone
Classification: ISOMERASE
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-12
Authors: Fedorov, A.A., Fedorov, E.V., Sakai, A., Gerlt, J.A., Almo, S.C.
PDB entry 3dg8: Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with RJF670, NADPH, and dUMP
Classification: OXIDOREDUCTASE, TRANSFERASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2008-06-13
Authors: Dasgupta, T., Chitnumsub, P., Maneeruttanarungroj, C., Kamchonwongpaisan, S., Nichols, S., Lyons, T.M., Tirado-Rives, J., Jorgensen, W.L., Yuthavong, Y., Anderson, K.S.
PDB entry 3dg9: Crystal Structure of Malonate Decarboxylase from Bordatella bronchiseptica
Classification: LYASE
Source organism: Bordetella bronchiseptica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-06-13
Authors: Okrasa, K., Levy, C., Baudendistel, N., Leys, D., Micklefield, J.
PDB entry 3dga: Wild-type Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with RJF01302, NADPH, and dUMP
Classification: OXIDOREDUCTASE, TRANSFERASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-13
Authors: Dasgupta, T., Chitnumsub, P., Maneeruttanarungroj, C., Kamchonwongpaisan, S., Nichols, S., Lyons, T.M., Tirado-Rives, J., Jorgensen, W.L., Yuthavong, Y., Anderson, K.S.
PDB entry 3dgb: Crystal structure of muconate lactonizing enzyme from Pseudomonas Fluorescens complexed with muconolactone
Classification: ISOMERASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-06-13
Authors: Fedorov, A.A., Fedorov, E.V., Sauder, J.M., Burley, S.K., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3dgc: Structure of IL-22/IL-22R1
Classification: cytokine/signaling protein
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-13
Authors: Jones, B.C., Logsdon, N.J., Walter, M.R.
PDB entry 3dgd: Crystal structure of the F87M/L110M mutant of human transthyretin at pH 4.6
Classification: LIGAND BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.383 Å
Deposited: 2008-06-13
Authors: Palmieri, L.C., Freire, J.B.B., Foguel, D., Lima, L.M.T.R.
PDB entry 3dge: Structure of a histidine kinase-response regulator complex reveals insights into Two-component signaling and a novel cis-autophosphorylation mechanism
Classification: TRANSFERASE/SIGNALING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-06-13
Authors: Casino, P., Marina, A.
PDB entry 3dgf: Structure of a histidine kinase-response regulator complex reveals insights into Two-component signaling and a novel cis-autophosphorylation mechanism
Classification: SIGNALING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-13
Authors: Casino, P., Marina, A.
PDB entry 3dgg: Crystal structure of FabOX108
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-06-13
Authors: Ren, J., Nettleship, J.E., Owens, R.J., Oxford Protein Production Facility (OPPF)
PDB entry 3dgh: Crystal Structure of Drosophila Thioredoxin Reductase, C-terminal 8-residue truncation
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.745 Å
Deposited: 2008-06-13
Authors: Eckenroth, B.E., Hondal, R.J., Everse, S.J.
PDB entry 3dgi: Crystal structure of F87A/T268A mutant of CYP BM3
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2008-06-13
Authors: Le Trong, I., Katayama, J.H., Totah, R.A., Stenkamp, R.E., Fox, E.P.
PDB entry 3dgj: NNFGAIL segment from Islet Amyloid Polypeptide (IAPP or amylin)
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-13
Authors: Wiltzius, J.J., Sievers, S.A., Sawaya, M.R., Cascio, D., Eisenberg, D.
PDB entry 3dgk: Crystal structure of a glycine-rich loop mutant of the death associated protein kinase catalytic domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-06-13
Authors: McNamara, L.K., Schavocky, J.P., Watterson, D.M., Brunzelle, J.S.
PDB entry 3dgl: 1.8 A Crystal Structure of a Non-biological Protein with Bound ATP in a Novel Bent Conformation
Classification: DE NOVO PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-13
Authors: Simmons, C.R., Allen, J.P., Chaput, J.C.
PDB entry 3dgm: 2.4 A Structure of a Non-biological ATP binding protein with ADP bound
Classification: DE NOVO PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-13
Authors: Simmons, C.R., Allen, J.P., Chaput, J.C.
PDB entry 3dgn: A non-biological ATP binding protein crystallized in the presence of 100 mM ADP
Classification: DE NOVO PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-13
Authors: Simmons, C.R., Allen, J.P., Chaput, J.C.
PDB entry 3dgo: A non-biological ATP binding protein with a Tyr-Phe mutation in the ligand binding domain
Classification: DE NOVO PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-13
Authors: Simmons, C.R., Allen, J.P., Chaput, J.C.
PDB entry 3dgp: Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-14
Authors: Kainov, D.E., Cavarelli, J., Egly, J.M., Poterszman, A.
PDB entry 3dgq: Crystal structure of the glutathione transferase PI enzyme in complex with the bifunctional inhibitor, etharapta
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-15
Authors: Parker, L.J.
PDB entry 3dgr: Crystal structure of human NAMPT complexed with ADP analogue
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-15
Authors: Ho, M., Burgos, E.S., Almo, S.C., Schramm, V.L.
PDB entry 3dgs: Changing the determinants of protein stability from covalent to non-covalent interactions by in-vitro evolution: a structural and energetic analysis
Classification: VIRAL PROTEIN
Source organism: Bacteriophage fd
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-06-16
Authors: Jakob, R.P., Kather, I., Dobbek, H., Schmid, F.X.
PDB entry 3dgt: The 1.5 A crystal structure of endo-1,3-beta-glucanase from Streptomyces sioyaensis
Classification: HYDROLASE
Source organism: Streptomyces sioyaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-06-16
Authors: Li, T.H.
PDB entry 3dgv: Crystal structure of thrombin activatable fibrinolysis inhibitor (TAFI)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-16
Authors: Anand, K., Pallares, I., Valnickova, Z., Christensen, T., Schreuder, H., Enghild, J.
PDB entry 3dgy: Crystal structure of ribonuclease Sa2 with guanosine-2'-cyclophosphate
Classification: HYDROLASE
Source organism: Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-16
Authors: Sevcik, J., Bauerova-Hlinkova, V.
PDB entry 3dgz: Crystal Structure of Mouse Mitochondrial Thioredoxin Reductase, C-terminal 3-residue truncation
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2008-06-16
Authors: Eckenroth, B.E., Hondal, R.J., Everse, S.J.
PDB entry 3dh0: Crystal structure of a SAM dependent methyltransferase from Aquifex aeolicus
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2008-06-16
Authors: Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3dh1: Crystal structure of human tRNA-specific adenosine-34 deaminase subunit ADAT2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-06-16
Authors: Welin, M., Tresaugues, L., Andersson, J., Arrowsmith, C.H., Berglund, H., Collins, R., Dahlgren, L.G., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, A., Johansson, I., Karlberg, T., Kotenyova, T., Lehtio, L., Moche, M., Nilsson, M.E., Nyman, T., Olesen, K., Persson, C., Sagemark, J., Schueler, H., Thorsell, A.G., van der Berg, S., Wisniewska, M., Wikstrom, M., Nordlund, P., Structural Genomics Consortium (SGC)
PDB entry 3dh2: Crystal structure of ribonuclease Sa2 with guanosine-3'-cyclophosphate prepared by cocrystallization
Classification: HYDROLASE
Source organism: Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2008-06-16
Authors: Sevcik, J., Bauerova-Hlinkova, V.
PDB entry 3dh3: Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate
Classification: ISOMERASE/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2008-06-16
Authors: Alian, A., DeGiovanni, A., Stroud, R.M., Finer-Moore, J.S.
PDB entry 3dh4: Crystal Structure of Sodium/Sugar symporter with bound Galactose from vibrio parahaemolyticus
Classification: TRANSPORT PROTEIN
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-16
Authors: Abramson, J., Faham, S., Cascio, D.
PDB entry 3dh5: Crystal structure of bovine pancreatic ribonuclease A (wild-type)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-17
Authors: Kurpiewska, K., Font, J., Ribo, M., Vilanova, M., Lewinski, K.
PDB entry 3dh6: Crystal structure of bovine pancreatic ribonuclease A variant (V47A)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-17
Authors: Kurpiewska, K., Font, J., Ribo, M., Vilanova, M., Lewinski, K.
PDB entry 3dh7: Structure of T. thermophilus IDI-2 in complex with PPi
Classification: ISOMERASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2008-06-17
Authors: de Ruyck, J., Wouters, J.
PDB entry 3dh8: Structure of Pseudomonas Quinolone Signal Response Protein PqsE
Classification: METAL BINDING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-17
Authors: Yu, S., Blankenfeldt, W.
PDB entry 3dh9: Crystal Structure of Drosophila Thioredoxin Reductase, wild-type
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2008-06-17
Authors: Eckenroth, B.E., Hondal, R.J., Everse, S.J.
PDB entry 3dha: An Ultral High Resolution Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homoserine Bound at An Alternative Site
Classification: HYDROLASE
Source organism: Bacillus thuringiensis serovar kurstaki
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2008-06-17
Authors: Liu, D., Momb, J., Thomas, P.W., Moulin, A., Petsko, G.A., Fast, W., Ringe, D.
PDB entry 3dhb: 1.4 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homoserine Bound at The Catalytic Metal Center
Classification: HYDROLASE
Source organism: Bacillus thuringiensis serovar kurstaki
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2008-06-17
Authors: Liu, D., Momb, J., Thomas, P.W., Moulin, A., Petsko, G.A., Fast, W., Ringe, D.
PDB entry 3dhc: 1.3 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homocysteine Bound to The catalytic Metal Center
Classification: HYDROLASE
Source organism: Bacillus thuringiensis serovar kurstaki
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2008-06-17
Authors: Liu, D., Momb, J., Thomas, P.W., Moulin, A., Petsko, G.A., Fast, W., Ringe, D.
PDB entry 3dhd: Crystal structure of human NAMPT complexed with nicotinamide mononucleotide and pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-17
Authors: Ho, M., Burgos, E.S., Almo, S.C., Schramm, V.L.
PDB entry 3dhe: ESTROGENIC 17-BETA HYDROXYSTEROID DEHYDROGENASE COMPLEXED DEHYDROEPIANDROSTERONE
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1998-03-25
Authors: Han, Q., Campbell, R.L., Gangloff, A., Lin, S.X.
PDB entry 3dhf: Crystal structure of phosphorylated mimic form of human NAMPT complexed with nicotinamide mononucleotide and pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-17
Authors: Ho, M., Burgos, E.S., Almo, S.C., Schramm, V.L.
PDB entry 3dhg: Crystal Structure of Toluene 4-Monoxygenase Hydroxylase
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas mendocina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2008-06-17
Authors: Bailey, L.J., Mccoy, J.G., Phillips Jr., G.N., Fox, B.G.
PDB entry 3dhh: Crystal Structure of Resting State Toluene 4-Monoxygenase Hydroxylase Complexed with Effector Protein
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas mendocina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2008-06-17
Authors: Bailey, L.J., Mccoy, J.G., Phillips Jr., G.N., Fox, B.G.
PDB entry 3dhi: Crystal Structure of Reduced Toluene 4-Monoxygenase Hydroxylase Complexed with Effector Protein
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas mendocina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2008-06-17
Authors: Bailey, L.J., Mccoy, J.G., Phillips Jr., G.N., Fox, B.G.
PDB entry 3dhj: Beta 2 microglobulin mutant W60C
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-18
Authors: Ricagno, S., Colombo, M., de Rosa, M., Bolognesi, M., Giorgetti, S., Bellotti, V.
PDB entry 3dhk: Bisphenylic Thrombin Inhibitors
Classification: Blood Clotting/Hydrolase Inhibitor
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2008-06-18
Authors: Baum, B., Heine, A., Klebe, G.
PDB entry 3dhm: Beta 2 microglobulin mutant D59P
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-18
Authors: Ricagno, S., Colombo, M., de Rosa, M., Bolognesi, M., Giorgetti, S., Bellotti, V.
PDB entry 3dhn: Crystal structure of the putative epimerase Q89Z24_BACTN from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR310.
Classification: isomerase, lyase
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-18
Authors: Vorobiev, S.M., Su, M., Seetharaman, J., Wang, D., Ciccosanti, C., Foote, L.E., Janjua, H., Xiao, R., Acton, T., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3dho: Structure of Streptogramin Acetyltransferase in Complex with an Inhibitor
Classification: TRANSFERASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-18
Authors: Roderick, S.L., Pesaresi, A., Wright, G.D.
PDB entry 3dhp: Probing the role of aromatic residues at the secondary saccharide binding sites of human salivary alpha-amylase in substrate hydrolysis and bacterial binding
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-06-18
Authors: Ragunath, C., Manuel, S.G.A., Sait, H.M., Kasinathan, C.
PDB entry 3dhq: Crystal structure of Staphylococcal nuclease variant Delta+PHS A90R at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2008-06-18
Authors: Harms, M.J., Schlessman, J.L., Garcia-Moreno, E.B.
PDB entry 3dhr: Crystal Structure Determination of Methemoglobin from Pigeon at 2 Angstrom Resolution (Columba livia)
Classification: OXYGEN STORAGE, OXYGEN TRANSPORT
Source organism: Columba livia
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-18
Authors: Sathya Moorthy, P., Neelagandan, K., Balasubramanian, M., Ponnuswamy, M.N.
PDB entry 3dhs: Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
Classification: HYDROLASE, RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2008-06-18
Authors: Pace, N.R., Kazantsev, A.V., Krivenko, A.A.
PDB entry 3dht: The Crystal Structure Determination of Rat (rattus norvegicus) Hemoglobin
Classification: OXYGEN STORAGE, OXYGEN TRANSPORT
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2008-06-18
Authors: Neelagandan, K., Sathya Moorthy, P., Balasubramanian, M., Sundaresan, S., Ponnuswamy, M.N.
PDB entry 3dhu: Crystal structure of an alpha-amylase from Lactobacillus plantarum
Classification: HYDROLASE
Source organism: Lactobacillus plantarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-18
Authors: Bonanno, J.B., Dickey, M., Bain, K.T., Iizuka, M., Ozyurt, S., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3dhv: Crystal structure of DltA protein in complex with D-alanine adenylate
Classification: LIGASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-18
Authors: Du, L., He, Y., Luo, Y.
PDB entry 3dhw: Crystal structure of methionine importer MetNI
Classification: MEMBRANE PROTEIN/HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2008-06-18
Authors: Rees, D.C., Kaiser, J.T., Kadaba, N.S., Johnson, E., Lee, A.T.
PDB entry 3dhx: Crystal structure of isolated C2 domain of the methionine uptake transporter
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-18
Authors: Johnson, E., Kaiser, J.T., Lee, A.T., Rees, D.C.
PDB entry 3dhy: Crystal Structures of Mycobacterium tuberculosis S-Adenosyl-L-Homocysteine Hydrolase in Ternary Complex with Substrate and Inhibitors
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-19
Authors: Shetty, N.D., Ioerger, T.R., Gokulan, K., Reddy, M.C.M., Owen, J.L., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 3dhz: Apo (iron free) structure of C. ammoniagenes R2 protein
Classification: METAL BINDING PROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2008-06-19
Authors: Hogbom, M., Nordlund, P.
PDB entry 3di0: Crystal Structure of Dihydrodipicolinate synthase from Staphylococcus aureus
Classification: LYASE
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2008-06-19
Authors: Tavarekere, G.S.
PDB entry 3di1: Crystal structure of the Staphylococcus aureus Dihydrodipicolinate synthase-pyruvate complex
Classification: LYASE
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-06-19
Authors: Tavarekere, G.S.
PDB entry 3di2: Crystal structure of the complex of human interleukin-7 with unglycosylated human interleukin-7 receptor alpha ectodomain
Classification: CYTOKINE/CYTOKINE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-19
Authors: McElroy, C.A., Dohm, J.A., Walsh, S.T.R.
PDB entry 3di3: Crystal structure of the complex of human interleukin-7 with glycosylated human interleukin-7 receptor alpha ectodomain
Classification: CYTOKINE/CYTOKINE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-06-19
Authors: McElroy, C.A., Dohm, J.A., Walsh, S.T.R.
PDB entry 3di4: Crystal structure of a duf1989 family protein (spo0365) from silicibacter pomeroyi dss-3 at 1.60 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Silicibacter pomeroyi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-19
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3di5: Crystal structure of a dinb-like protein (bce_4655) from bacillus cereus atcc 10987 at 2.01 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bacillus cereus ATCC 10987
Experimental method: X-RAY DIFFRACTION
Resolution: 2.009 Å
Deposited: 2008-06-19
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3di6: HIV-1 RT with pyridazinone non-nucleoside inhibitor
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 (HXB2 isolate)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2008-06-19
Authors: Harris, S.F., Villasenor, A., Dunten, P.
PDB entry 3di7: Crystal structure of bovine pancreatic ribonuclease A variant (V54A)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-20
Authors: Kurpiewska, K., Font, J., Ribo, M., Vilanova, M., Lewinski, K.
PDB entry 3di8: Crystal structure of bovine pancreatic ribonuclease A variant (V57A)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-20
Authors: Kurpiewska, K., Font, J., Ribo, M., Vilanova, M., Lewinski, K.
PDB entry 3di9: Crystal structure of bovine pancreatic ribonuclease A variant (I81A)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-20
Authors: Kurpiewska, K., Font, J., Ribo, M., Vilanova, M., Lewinski, K.
PDB entry 3dib: Crystal structure of bovine pancreatic ribonuclease A variant (I106A)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2008-06-20
Authors: Kurpiewska, K., Font, J., Ribo, M., Vilanova, M., Lewinski, K.
PDB entry 3dic: Crystal structure of bovine pancreatic ribonuclease A variant (V108A)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-20
Authors: Kurpiewska, K., Font, J., Ribo, M., Vilanova, M., Lewinski, K.
PDB entry 3did: Crystal structure of the F87M/L110M mutant of human transthyretin at pH 4.6 soaked
Classification: LIGAND BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2008-06-20
Authors: Palmieri, L.C., Freire, J.B.B., Foguel, D., Lima, L.M.T.R.
PDB entry 3die: Domain swapping of Staphylococcus Aureus thioredoxin W28A mutant
Classification: ELECTRON TRANSPORT
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2008-06-20
Authors: Martinez-Rodriguez, S., Loris, R., Messens, J.
PDB entry 3dif: Crystal structure of FabOX117
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-20
Authors: Nettleship, J.E., Ren, J., Owens, R.J., Oxford Protein Production Facility (OPPF)
PDB entry 3dig: CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-aminoethyl)-L-cysteine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-06-20
Authors: Serganov, A.A.
PDB entry 3dih: Crystal structure of ammodytin L
Classification: TOXIN
Source organism: Vipera ammodytes ammodytes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-06-20
Authors: Turk, D., Guncar, G., Krizaj, I.
PDB entry 3dik: Pseudo-atomic model of the HIV-1 CA hexameric lattice
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 9 Å
Deposited: 2008-06-20
Authors: Ganser-Pornillos, B.K., Cheng, A., Yeager, M.
PDB entry 3dil: Crystal structure of the Thermotoga maritima lysine riboswitch bound to lysine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-06-20
Authors: Serganov, A.A.
PDB entry 3dim: Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Cs+ Soak
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-06-20
Authors: Serganov, A.A.
PDB entry 3din: Crystal structure of the protein-translocation complex formed by the SecY channel and the SecA ATPase
Classification: MEMBRANE PROTEIN, PROTEIN TRANSPORT
Source organism: Thermotoga maritima MSB8; Thermotoga sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2008-06-20
Authors: Zimmer, J., Nam, Y., Rapoport, T.A.
PDB entry 3dio: Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, IRIDIUM HEXAMINE SOAK
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-20
Authors: Serganov, A.A.
PDB entry 3dip: Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea
Classification: LYASE
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-20
Authors: Bonanno, J.B., Freeman, J., Bain, K.T., Zhang, F., Ozyurt, S., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3diq: Crystallization of the Thermotoga maritima lysine riboswitch bound to homoarginine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-20
Authors: serganov, A.A.
PDB entry 3dir: Crystallization of the Thermotoga maritima lysine riboswitch bound to N6-1-iminoethyl-L-Lysine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-06-20
Authors: Serganov, A.A.
PDB entry 3dis: Crystallization of the Thermotoga maritima lysine riboswitch in free form
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2008-06-20
Authors: Serganov, A.A.
PDB entry 3dit: Crystal structure of MAD MH2 domain
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2008-06-20
Authors: Hao, R., Wu, J.W., Wang, Z.X.
PDB entry 3div: Crystal structure of laccase from Cerrena maxima at 1.76A resolution
Classification: OXIDOREDUCTASE
Source organism: Cerrena
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2008-06-21
Authors: Lyashenko, A.V., Zhukova, Y.N., Mikhailov, A.M.
PDB entry 3diw: c-terminal beta-catenin bound TIP-1 structure
Classification: SIGNALING PROTEIN/CELL ADHESION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-21
Authors: Shen, Y.
PDB entry 3dix: Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, K+ anomalous data
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-06-21
Authors: Serganov, A.A.
PDB entry 3diy: Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Mn2+ soak
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2008-06-21
Authors: Serganov, A.A.
PDB entry 3diz: Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine in the Absence of Mg2+
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2008-06-21
Authors: Serganov, A.A.
PDB entry 3dj0: Crystallization of the Thermotoga maritima lysine riboswitch bound to L-4-oxalysine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-21
Authors: Serganov, A.A.
PDB entry 3dj1: crystal structure of TIP-1 wild type
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-21
Authors: Shen, Y.
PDB entry 3dj2: Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Tl+ Soak
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-21
Authors: Serganov, A.A.
PDB entry 3dj3: Crystal Structure of C-terminal Truncated TIP-1 (6-113)
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-21
Authors: Shen, Y.
PDB entry 3dj4: Crystal Structure of GlmU from Mycobacterium tuberculosis in complex with URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE.
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2008-06-22
Authors: Verma, S.K., Prakash, B.
PDB entry 3dj5: Crystal structure of the mouse Aurora-A catalytic domain (Asn186->Gly, Lys240->Arg, Met302->Leu) in complex with Compound 290.
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-22
Authors: Elling, R.A., Erlanson, D.A., Yang, W., Tangonan, B.T., Hansen, S.K., Romanowski, M.J.
PDB entry 3dj6: Crystal structure of the mouse Aurora-A catalytic domain (Asn186->Gly, Lys240->Arg, Met302->Leu) in complex with Compound 823.
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-06-22
Authors: Elling, R.A., Erlanson, D.A., Yang, W., Tangonan, B.T., Hansen, S.K., Romanowski, M.J.
PDB entry 3dj7: Crystal structure of the mouse Aurora-A catalytic domain (Asn186->Gly, Lys240->Arg, Met302->Leu) in complex with Compound 130.
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-06-22
Authors: Elling, R.A., Yang, W., Erlanson, D.A., Tangonan, B.T., Hansen, S.K., Romanowski, M.J.
PDB entry 3dj8: Synthesis of (2S)-2-amino-7,8-epoxyoctanoic acid and structure of its metal-bridging complex with human arginase I
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2008-06-22
Authors: Di Costanzo, L., Christianson, D.W.
PDB entry 3dj9: Crystal Structure of an isolated, unglycosylated antibody CH2 domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2008-06-22
Authors: Prabakaran, P., Vu, B.K., Gan, J., Dimitrov, D.S., Ji, X.
PDB entry 3dja: Crystal Structure of cpaf solved with MAD
Classification: TRANSFERASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-06-22
Authors: Chai, J., Huang, Z.
PDB entry 3djb: Crystal structure of a HD-superfamily hydrolase (BT9727_1981) from Bacillus thuringiensis, Northeast Structural Genomics Consortium Target BuR114
Classification: HYDROLASE
Source organism: Bacillus thuringiensis serovar konkukian
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-06-23
Authors: Forouhar, F., Su, M., Seetharaman, J., Vorobiev, S.M., Janjua, H., Fang, Y., Xiao, R., Cunningham, K., Maglaqui, M., Owen, L.A., Wang, D., Baran, M.C., Liu, J., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3djc: CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA
Classification: TRANSFERASE
Source organism: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-23
Authors: Patskovsky, Y., Bonanno, J.B., Romero, R., Dickey, M., Logan, C., Wasserman, S., Maletic, M., Koss, J., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3djd: Crystal structure of the deglycating enzyme fructosamine oxidase from Aspergillus fumigatus (Amadoriase II)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2008-06-23
Authors: Collard, F., Zhang, J., Nemet, I., Qanungo, K.R., Monnier, V.M., Yee, V.C.
PDB entry 3dje: Crystal structure of the deglycating enzyme fructosamine oxidase from Aspergillus fumigatus (Amadoriase II) in complex with FSA
Classification: OXIDOREDUCTASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-23
Authors: Collard, F., Zhang, J., Nemet, I., Qanungo, K.R., Monnier, V.M., Yee, V.C.
PDB entry 3djf: Crystal Structure of Schistosoma mansoni Purine Nucleoside Phosphorylase in a complex with BCX-34
Classification: TRANSFERASE
Source organism: Schistosoma mansoni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.302 Å
Deposited: 2008-06-23
Authors: Postigo, M.P., Pereira, H.M., Oliva, G., Andricopulo, A.D.
PDB entry 3djg: Catalytic cycle of human glutathione reductase near 1 A resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-23
Authors: Berkholz, D.S., Faber, H.R., Savvides, S.N., Karplus, P.A.
PDB entry 3djh: Macrophage Migration Inhibitory Factor (MIF) at 1.25 A Resolution
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2008-06-23
Authors: Crichlow, G.V., Lolis, E.
PDB entry 3dji: Crystal Structure of Macrophage Migration Inhibitory Factor Bound to an Acetaminophen Dimer Derived from NAPQI
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2008-06-23
Authors: Crichlow, G.V., Lolis, E.
PDB entry 3djj: Catalytic cycle of human glutathione reductase near 1 A resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2008-06-23
Authors: Berkholz, D.S., Faber, H.R., Savvides, S.N., Karplus, P.A.
PDB entry 3djk: Wild Type HIV-1 Protease with potent Antiviral inhibitor GRL-0255A
Classification: HYDROLASE
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2008-06-23
Authors: Wang, Y.F., Weber, I.T.
PDB entry 3djl: Crystal structure of alkylation response protein E. coli AidB
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-06-23
Authors: Eichman, B.F., Metz, A.H., Bowles, T.
PDB entry 3djm: CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM DUF427 FAMILY (RSPH17029_0682) FROM RHODOBACTER SPHAEROIDES 2.4.1 AT 2.51 A RESOLUTION
Classification: UNKNOWN FUNCTION
Source organism: Rhodobacter sphaeroides 2.4.1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2008-06-23
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3djn: Crystal structure of mouse TIS21
Classification: TRANSCRIPTION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-06-24
Authors: Yang, X., Morita, M., Wang, H., Suzuki, T., Bartlam, M., Yamamoto, T.
PDB entry 3djo: Bovine Seminal Ribonuclease uridine 2' phosphate complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-24
Authors: Dossi, K., Leonidas, D.D., Zographos, S.E., Oikonomakos, N.G.
PDB entry 3djp: Bovine Seminal Ribonuclease- Uridine 3' phosphate complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-24
Authors: Dossi, K., Leonidas, D.D., Zographos, S.E., Oikonomakos, N.G.
PDB entry 3djq: Bovine Seminal Ribonuclease- Uridine 5' diphosphate complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2008-06-24
Authors: Dossi, K., Leonidas, D.D., Zographos, S.E., Oikonomakos, N.G.
PDB entry 3djr: CRYSTAL STRUCTURE OF TRANSTHYRETIN VARIANT L58H at neutral pH
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2008-06-24
Authors: Cendron, L., Zanotti, G., Folli, C., Berni, R.
PDB entry 3djs: Crystal structure of transthyretin variant L58H at acidic pH
Classification: TRANSPORT PROTEIN
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-24
Authors: Cendron, L., Zanotti, G., Folli, C., Berni, R.
PDB entry 3djt: Crystal structure of transthyretin variant V30M at acidic pH
Classification: TRANSPORT PROTEIN
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-06-24
Authors: Cendron, L., Zanotti, G., Folli, C., Berni, R.
PDB entry 3dju: Crystal structure of human BTG2
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2008-06-24
Authors: Yang, X., Morita, M., Wang, H., Suzuki, T., Bartlam, M., Yamamoto, T.
PDB entry 3djv: Bovine Seminal Ribonuclease- cytidine 3' phosphate complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-24
Authors: Dossi, K., Leonidas, D.D., Zographos, S.E., Oikonomakos, N.G.