LiteFold/PDB huggingface dataset:
PDB entry 3djw: The thermo- and acido-stable ORF-99 from the archaeal virus AFV1
Classification: VIRAL PROTEIN, UNKNOWN FUNCTION
Source organism: Acidianus Filamentous Virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2008-06-24
Authors: Goulet, A., Spinelli, S., Prangishvili, D., van Tilbeurgh, H., Cambillau, C., Campanacci, V.
PDB entry 3djx: Bovine Seminal Ribonuclease- cytidine 5' phosphate complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2008-06-24
Authors: Dossi, K., Leonidas, D.D., Zographos, S.E., Oikonomakos, N.G.
PDB entry 3djy: Nonaged Form of Human Butyrylcholinesterase Inhibited by Tabun
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-24
Authors: Carletti, E., Nachon, F.
PDB entry 3djz: Crystal structure of transthyretin variant L55P at neutral pH
Classification: TRANSPORT PROTEIN
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2008-06-24
Authors: Cendron, L., Zanotti, G., Folli, C., Berni, R.
PDB entry 3dk0: Crystal structure of transthyretin variant L55P at acidic pH
Classification: TRANSPORT PROTEIN
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2008-06-24
Authors: Cendron, L., Zanotti, G., Folli, C., Berni, R.
PDB entry 3dk1: Wild Type HIV-1 Protease with potent Antiviral inhibitor GRL-0105A
Classification: HYDROLASE
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.07 Å
Deposited: 2008-06-24
Authors: Wang, Y.F., Weber, I.T.
PDB entry 3dk2: Crystal structure of transthyretin variant Y114H at acidic pH
Classification: TRANSPORT PROTEIN
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2008-06-24
Authors: Cendron, L., Zanotti, G., Folli, C., Berni, R.
PDB entry 3dk3: Crystal structure of mutant ABL kinase domain in complex with small molecule fragment
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2008-06-24
Authors: Lewis, H.A.
PDB entry 3dk4: Catalytic cycle of human glutathione reductase near 1 A resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2008-06-24
Authors: Berkholz, D.S., Faber, H.R., Savvides, S.N., Karplus, P.A.
PDB entry 3dk5: Crystal Structure of Apo-GlmU from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2008-06-24
Authors: Verma, S.K., Prakash, B.
PDB entry 3dk6: Crystal structure of mutant ABL kinase domain in complex with small molecule fragment
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2008-06-24
Authors: Lewis, H.A.
PDB entry 3dk7: Crystal structure of mutant ABL kinase domain in complex with small molecule fragment
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2008-06-24
Authors: Lewis, H.A.
PDB entry 3dk8: Catalytic cycle of human glutathione reductase near 1 A resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2008-06-24
Authors: Berkholz, D.S., Faber, H.R., Savvides, S.N., Karplus, P.A.
PDB entry 3dk9: Catalytic cycle of human glutathione reductase near 1 A resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2008-06-24
Authors: Berkholz, D.S., Faber, H.R., Savvides, S.N., Karplus, P.A.
PDB entry 3dka: Crystal structure of a dinb-like protein (yjoa, bsu12410) from bacillus subtilis at 2.30 A resolution
Classification: UNKNOWN FUNCTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-06-24
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3dkb: Crystal Structure of A20, 2.5 angstrom
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-24
Authors: Lin, S.-C., Chung, J.Y., Lo, Y.-C., Wu, H.
PDB entry 3dkc: Structure of MET receptor tyrosine kinase in complex with ATP
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2008-06-24
Authors: Hendle, J.
PDB entry 3dkd: Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with GDP
Classification: TRANSFERASE
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-06-24
Authors: Jeudy, S., Lartigue, A., Claverie, J.M., Abergel, C.
PDB entry 3dke: Polar and non-polar cavities in phage T4 lysozyme
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2008-06-24
Authors: Liu, L.J., Matthews, B.W.
PDB entry 3dkf: Structure of MET receptor tyrosine kinase in complex with inhibitor SGX-523
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-24
Authors: Hendle, J.
PDB entry 3dkg: Structure of Mutant(Y1248L) MET receptor tyrosine kinase in complex with inhibitor SGX-523
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2008-06-24
Authors: Hendle, J.
PDB entry 3dkh: L559A mutant of Melanocarpus albomyces laccase
Classification: OXIDOREDUCTASE
Source organism: Melanocarpus albomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-25
Authors: Hakulinen, N., Rouvinen, J.
PDB entry 3dki: 2.1 A X-ray structure of CysM (Rv1336) from Mycobacterium tuberculosis an O-phosphoserine dependent cysteine synthase
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-25
Authors: Agren, D., Schnell, R., Schneider, G.
PDB entry 3dkj: Crystal structure of human NAMPT complexed with benzamide and phosphoribosyl pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-25
Authors: Ho, M., Burgos, E.S., Almo, S.C., Schramm, V.L.
PDB entry 3dkk: Aged Form of Human Butyrylcholinesterase Inhibited by Tabun
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2008-06-25
Authors: Nachon, F., Carletti, E.
PDB entry 3dkl: Crystal structure of phosphorylated mimic form of human NAMPT complexed with benzamide and phosphoribosyl pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2008-06-25
Authors: Ho, M., Burgos, E.S., Almo, S.C., Schramm, V.L.
PDB entry 3dkm: Crystal structure of the HECTD1 CPH domain
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-25
Authors: Walker, J.R., Qiu, L., Li, Y., Bountra, C., Wolkstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)
PDB entry 3dkn: Sec61 in the Canine ribosome-channel complex from the endoplasmic reticulum
Classification: protein transport/RNA
Source organism: Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.7 Å
Deposited: 2008-06-25
Authors: Menetret, J.-F., Akey, C.
PDB entry 3dko: Complex between the kinase domain of human ephrin type-a receptor 7 (epha7) and inhibitor alw-ii-49-7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-25
Authors: Walker, J.R., Syeda, F., Gray, N., Butler-Cole, C., Bountra, C., Wolkstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)
PDB entry 3dkp: Human DEAD-box RNA-helicase DDX52, conserved domain I in complex with ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-25
Authors: Lehtio, L., Karlberg, T., Andersson, J., Arrowsmith, C.H., Berglund, H., Collins, R., Dahlgren, L.G., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, A., Johansson, I., Kotenyova, T., Moche, M., Nilsson, M.E., Nordlund, P., Nyman, T., Olesen, K., Persson, C., Sagemark, J., Thorsell, A.G., Tresaugues, L., van den Berg, S., Welin, M., Wisniewska, M., Wikstrom, M., Schueler, H., Structural Genomics Consortium (SGC)
PDB entry 3dkq: Crystal structure of Putative Oxygenase (YP_001051978.1) from SHEWANELLA BALTICA OS155 at 2.26 A resolution
Classification: OXIDOREDUCTASE
Source organism: Shewanella baltica OS155
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2008-06-25
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3dkr: Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
Classification: HYDROLASE
Source organism: Lactobacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-06-25
Authors: Bennett, M.D., Delabre, M.-L., Holland, R., Norris, G.E.
PDB entry 3dks: DsbA substrate complex
Classification: OXIDOREDUCTASE
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-06-25
Authors: Paxman, J.J., Borg, N.A., Horne, J., Rossjohn, J., Thompson, P.E., Piek, S., Kahler, C.M., Sakellaris, H., Scanlon, M.J.
PDB entry 3dkt: Crystal structure of Thermotoga maritima encapsulin
Classification: STRUCTURAL PROTEIN/VIRUS LIKE PARTICLE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 3.104 Å
Deposited: 2008-06-26
Authors: Sutter, M., Boehringer, D., Gutmann, S., Weber-Ban, E., Ban, N.
PDB entry 3dku: Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1
Classification: HYDROLASE
Source organism: Escherichia coli APEC O1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2008-06-26
Authors: Hong, M.K., Kim, J.K., Jung, J.H., Jung, J.W., Choi, J.Y., Kang, L.W.
PDB entry 3dkv: Crystal structure of adenylate kinase variant AKlse1
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2008-06-26
Authors: Bannen, R.M., Bianchetti, C.M., Bingman, C.A., Bitto, E.B.
PDB entry 3dkw: Crystal Structure of DNR from Pseudomonas aeruginosa.
Classification: TRANSCRIPTION REGULATOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2008-06-26
Authors: Giardina, G.
PDB entry 3dkx: Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution
Classification: REPLICATION
Source organism: Streptococcus agalactiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-26
Authors: Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.
PDB entry 3dky: Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution
Classification: REPLICATION
Source organism: Streptococcus agalactiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2008-06-26
Authors: Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.
PDB entry 3dkz: Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C.
Classification: HYDROLASE
Source organism: Bordetella parapertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-26
Authors: Vorobiev, S.M., Su, M., Seetharaman, J., Wang, D., Ciccosanti, C., Foote, E.L., Mao, L., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 3dl0: Crystal structure of adenylate kinase variant AKlse3
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2008-06-26
Authors: Bannen, R.M., Bianchetti, C.M., Bingman, C.A., McCoy, J.G.
PDB entry 3dl1: Crystal structure of a Putative Metal-dependent Hydrolase (YP_001336084.1) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 2.20 A resolution
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-06-26
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3dl2: Hexagonal structure of the LDH domain of Human Ubiquitin-conjugating Enzyme E2-like Isoform A
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-06-26
Authors: Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Finerty Jr., P.J., Butler-Cole, C., Bountra, C., Wolkstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)
PDB entry 3dl3: Crystal structure of the tellurite resistance protein TehB. Northeast Structural Genomics Consortium target VfR98 .
Classification: structural genomics, unknown function
Source organism: Vibrio fischeri ES114
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-06-26
Authors: Kuzin, A.P., Su, M., Seetharaman, J., Wang, D., Mao, L., Maglaqui, M., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3dl4: Non-Aged Form of Mouse Acetylcholinesterase Inhibited by Tabun- Update
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-26
Authors: Carletti, E., Li, H., Li, B., Ekstrom, F., Nicolet, Y., Loiodice, M., Gillon, E., Froment, M.T., Lockridge, O., Schopfer, L.M., Masson, P., Nachon, F.
PDB entry 3dl5: Crystal Structure of the A287F Active Site Mutant of TS-DHFR from Cryptosporidium hominis
Classification: OXIDOREDUCTASE
Source organism: Cryptosporidium hominis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2008-06-26
Authors: Vargo, M.A., Martucci, W.E., Anderson, K.S.
PDB entry 3dl6: Crystal Structure of the A287F/S290G Active Site Mutant of TS-DHFR from Cryptosporidium hominis
Classification: OXIDOREDUCTASE
Source organism: Cryptosporidium hominis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2008-06-26
Authors: Martucci, W.E., Vargo, M.A., Anderson, K.S.
PDB entry 3dl7: Aged Form of Mouse Acetylcholinesterase Inhibited by Tabun- Update
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-26
Authors: Carletti, E., Li, H., Li, B., Ekstrom, F., Nicolet, Y., Loiodice, M., Gillon, E., Froment, M.T., Lockridge, O., Schopfer, L.M., Masson, P., Nachon, F.
PDB entry 3dl8: Structure of the complex of aquifex aeolicus SecYEG and bacillus subtilis SecA
Classification: PROTEIN TRANSPORT
Source organism: Aquifex aeolicus; Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 7.5 Å
Deposited: 2008-06-26
Authors: Nam, Y., Zimmer, J., Rapoport, T.A.
PDB entry 3dl9: Crystal structure of CYP2R1 in complex with 1-alpha-hydroxy-vitamin D2
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.721 Å
Deposited: 2008-06-26
Authors: Strushkevich, N.V., Tempel, W., Gilep, A.A., Loppnau, P., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Wilkstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)
PDB entry 3dla: X-ray crystal structure of glutamine-dependent NAD+ synthetase from Mycobacterium tuberculosis bound to NaAD+ and DON
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2008-06-26
Authors: LaRonde-LeBlanc, N.A., Resto, M., Gerratana, B.
PDB entry 3dlb: Crystal structure of the guide-strand-containing Argonaute protein silencing complex
Classification: Nucleic Acid Binding Protein/dna
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-26
Authors: Wang, Y., Sheng, G., Patel, D.J.
PDB entry 3dlc: Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution
Classification: TRANSFERASE
Source organism: Methanococcus maripaludis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2008-06-27
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3dle: Crystal structure of hiv-1 reverse transcriptase in complex with GF128590.
Classification: TRANSFERASE
Source organism: HIV-1 M:B_HXB2R
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-06-27
Authors: Ren, J., Chamberlain, P.P., Stammers, D.K.
PDB entry 3dlg: Crystal structure of hiv-1 reverse transcriptase in complex with GW564511.
Classification: TRANSFERASE
Source organism: HIV-1 M:B_HXB2R
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-06-27
Authors: Ren, J., Chamberlain, P.P., Stammers, D.K.
PDB entry 3dlh: Crystal structure of the guide-strand-containing Argonaute protein silencing complex
Classification: Nucleic Acid Binding Protein/dna
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2008-06-27
Authors: Wang, Y., Sheng, G., Patel, D.J.
PDB entry 3dli: Crystal structure of a SAM dependent methyltransferase from Archaeoglobus fulgidus
Classification: TRANSFERASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2008-06-27
Authors: Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3dlj: Crystal structure of human carnosine dipeptidase 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2008-06-27
Authors: Dong, A., Dobrovetsky, E., Seitova, A., He, H., Tempel, W., Kozieradzki, I., Arrowsmith, C.H., Weigelt, J., Bountra, C., Edwards, A.M., Bochkarev, A., Cossar, D., Structural Genomics Consortium (SGC)
PDB entry 3dlk: Crystal Structure of an engineered form of the HIV-1 Reverse Transcriptase, RT69A
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1; Human immunodeficiency virus type 1 BH10
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2008-06-27
Authors: Ho, W.C., Bauman, J.D., Himmel, D.M., Das, K., Arnold, E.
PDB entry 3dll: The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning
Classification: RIBOSOME
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2008-06-27
Authors: Wilson, D.N., Schluenzen, F., Harms, J.M., Starosta, A.L., Connell, S.R., Fucini, P.
PDB entry 3dlm: Crystal structure of Tudor domain of human Histone-lysine N-methyltransferase SETDB1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2008-06-27
Authors: Amaya, M.F., Dombrovski, L., Loppnau, P., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Wu, H., Structural Genomics Consortium (SGC)
PDB entry 3dln: Crystal structure of the binding domain of the AMPA subunit GluR3 bound to glutamate
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2008-06-27
Authors: Ahmed, A.H., Wang, Q., Sondermann, H., Oswald, R.E.
PDB entry 3dlp: 4-Chlorobenzoyl-CoA Ligase/Synthetase, Mutant D402P, bound to 4CB
Classification: LIGASE
Source organism: Alcaligenes sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-06-28
Authors: Wu, R., Cao, J., Reger, A.S., Lu, X., Gulick, A.M., Dunaway-Mariano, D.
PDB entry 3dlq: Crystal structure of the IL-22/IL-22R1 complex
Classification: CYTOKINE/CYTOKINE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-06-28
Authors: Bleicher, L., de Moura, P.R., Watanabe, L., Colau, D., Dumoutier, L., Renauld, J.-C., Polikarpov, I.
PDB entry 3dlr: Crystal structure of the catalytic core domain from PFV integrase
Classification: TRANSFERASE
Source organism: Human spumaretrovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-06-29
Authors: Valkov, E., Cherepanov, P.
PDB entry 3dls: Crystal structure of human PAS kinase bound to ADP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-06-29
Authors: Antonysamy, S., Bonanno, J.B., Romero, R., Russell, M., Iizuka, M., Gheyi, T., Wasserman, S.R., Rutter, J., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3dlt: Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
Classification: HYDROLASE
Source organism: Lactobacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-06-29
Authors: Bennett, M.D., Delabre, M.-L., Holland, R., Norris, G.E.
PDB entry 3dlu: Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus.
Classification: RNA BINDING PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-29
Authors: Egea, P.F., Napetschnig, J., Walter, P., Stroud, R.M.
PDB entry 3dlv: Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus.
Classification: RNA BINDING PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2008-06-29
Authors: Egea, P.F., Napetschnig, J., Walter, P., Stroud, R.M.
PDB entry 3dlw: Antichymotrypsin
Classification: HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-06-29
Authors: Feil, S.C.
PDB entry 3dlx: Crystal structure of human 3-oxoacid CoA transferase 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-06-30
Authors: Kavanagh, K.L., Shafqat, N., Yue, W.W., Picaud, S., Murray, J.W., Maclean, E.M., von Delft, F., Roos, A.K., Arrowsmith, C.H., Wikstrom, M., Edwards, A.M., Bountra, C., Oppermann, U., Structural Genomics Consortium (SGC)
PDB entry 3dlz: Crystal structure of human haspin in complex with AMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2008-06-30
Authors: Filippakopoulos, P., Eswaran, J., Keates, T., Burgess-Brown, N., Murray, J.W., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Wickstroem, M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 3dm0: Maltose Binding Protein fusion with RACK1 from A. thaliana
Classification: Sugar Binding Protein,Signaling Protein
Source organism: Arabidopsis thaliana; Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-30
Authors: Ullah, H., Scappini, E.L., Moon, A.F., Williams, L.V., Armstrong, D.L., Pedersen, L.C.
PDB entry 3dm1: Crystal structure of the complex of human chromobox homolog 3 (CBX3) with peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-30
Authors: Amaya, M.F., Ravichandran, M., Loppnau, P., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Ouyang, H., Structural Genomics Consortium (SGC)
PDB entry 3dm2: Crystal structure of HIV-1 K103N mutant reverse transcriptase in complex with GW564511.
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2008-06-30
Authors: Ren, J., Chamberlain, P.P., Stammers, D.K.
PDB entry 3dm3: Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E
Classification: REPLICATION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-06-30
Authors: Seetharaman, J., Su, M., Maglaqui, M., Janjua, H., Ciccosanti, C., Xiao, R., Nair, R., Everett, J.K., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3dm5: Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus.
Classification: RNA BINDING PROTEIN, Transport protein
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2008-06-30
Authors: Egea, P.F., Napetschnig, J., Walter, P., Stroud, R.M.
PDB entry 3dm6: Beta-secretase 1 complexed with statine-based inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-06-30
Authors: Lindberg, J., Borkakoti, N., Nystrom, S.
PDB entry 3dm7: Crystal Structure of the Vps75 Histone Chaperone
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-06-30
Authors: Tang, Y., Marmorstein, R.
PDB entry 3dm8: Crystal Structure of Putative Isomerase from Rhodopseudomonas palustris
Classification: structural genomics, unknown function
Source organism: Rhodopseudomonas palustris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-06-30
Authors: Cymborowski, M., Chruszcz, M., Skarina, T., Kagan, O., Savchenko, A., Edwards, A.M., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
PDB entry 3dm9: Structures and Conformations in Solution of the Signal Recognition Particle Receptor from the archaeon Pyrococcus furiosus
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-06-30
Authors: Egea, P.F., Tsuruta, H., Napetschnig, J., Walter, P., Stroud, R.M.
PDB entry 3dmb: Crystal structure of a putative general stress family protein (xcc2264) from xanthomonas campestris pv. campestris at 2.30 A resolution
Classification: OXIDOREDUCTASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-06-30
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3dmc: CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (AVA_2261) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.65 A RESOLUTION
Classification: UNKNOWN FUNCTION
Source organism: Anabaena variabilis ATCC 29413
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2008-06-30
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3dmd: Structures and Conformations in Solution of the Signal Recognition Particle Receptor from the archaeon Pyrococcus furiosus
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2008-06-30
Authors: Egea, P.F., Tsuruta, H., Napetschnig, J., Walter, P., Stroud, R.M.
PDB entry 3dme: Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141
Classification: structural genomics, unknown function
Source organism: Bordetella pertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-06-30
Authors: Seetharaman, J., Abashidze, M., Wang, D., Janjua, H., Foote, E.L., Xiao, R., Liu, J., Everett, J.K., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 3dmf: T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoMet
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2008-07-01
Authors: Demirci, H., Gregory, S.T., Dahlberg, A.E., Jogl, G.
PDB entry 3dmg: T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoHcy
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2008-07-01
Authors: Demirci, H., Gregory, S.T., Dahlberg, A.E., Jogl, G.
PDB entry 3dmh: T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoMet and Guanosine
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2008-07-01
Authors: Demirci, H., Gregory, S.T., Dahlberg, A.E., Jogl, G.
PDB entry 3dmi: Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution
Classification: ELECTRON TRANSPORT
Source organism: Phaeodactylum tricornutum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-07-01
Authors: Akazaki, H., Kawai, F., Hosokawa, M., Hama, T., Hirano, T., Lim, B.-K., Sakurai, N., Hakamata, W., Park, S.-Y., Nishio, T., Oku, T.
PDB entry 3dmj: CRYSTAL STRUCTURE OF HIV-1 V106A and Y181C MUTANT REVERSE TRANSCRIPTASE IN COMPLEX WITH GW564511.
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-07-01
Authors: Ren, J., Chamberlain, P.P., Stammers, D.K.
PDB entry 3dmk: Crystal structure of Down Syndrome Cell Adhesion Molecule (DSCAM) isoform 1.30.30, N-terminal eight Ig domains
Classification: CELL ADHESION
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 4.19 Å
Deposited: 2008-07-01
Authors: Sawaya, M.R., Wojtowicz, W.M., Eisenberg, D., Zipursky, S.L.
PDB entry 3dml: Crystal structure of the periplasmic thioredoxin SoxS from Paracoccus pantotrophus (reduced form)
Classification: OXIDOREDUCTASE
Source organism: Paracoccus denitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-07-01
Authors: Carius, Y., Friedrich, C.G., Scheidig, A.J.
PDB entry 3dmm: Crystal structure of the CD8 alpha beta/H-2Dd complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-07-01
Authors: Wang, R., Natarajan, K., Margulies, D.H.
PDB entry 3dmn: The crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1
Classification: structural genomics, unknown function
Source organism: Lactobacillus plantarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2008-07-01
Authors: Tan, K., Zhou, M., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3dmo: 1.6 A crystal structure of cytidine deaminase from Burkholderia pseudomallei
Classification: HYDROLASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-07-01
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3dmp: 2.6 A crystal structure of uracil phosphoribosyltransferase from Burkholderia pseudomallei
Classification: TRANSFERASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-07-01
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3dmr: STRUCTURE OF DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS AT PH 7.0
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter capsulatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1997-04-25
Authors: Mcalpine, A.S., Bailey, S.
PDB entry 3dms: 1.65A crystal structure of isocitrate dehydrogenase from Burkholderia pseudomallei
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2008-07-01
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3dmt: Structure of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase from Trypanosoma cruzi in complex with the irreversible iodoacetate inhibitor
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-07-01
Authors: Guido, R.V.C., Balliano, T.L., Andricopulo, A.D., Oliva, G.
PDB entry 3dmu: Crystal structure of Staphylococcal nuclease variant PHS T62K at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Khangulov, V.S., Schlessman, J.L., Garcia-Moreno, E.B., Benning, M., Isom, D.
PDB entry 3dmv: Free of ligand binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dmw: Crystal structure of human type III collagen G982-G1023 containing C-terminal cystine knot
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-07-01
Authors: Boudko, S.P., Engel, J., Okuyama, K., Mizuno, K., Bachinger, H.P., Schumacher, M.A.
PDB entry 3dmx: Benzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dmy: Crystal Structure of a predicated acyl-CoA synthetase from E.coli
Classification: structural genomics, unknown function
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2008-07-01
Authors: Sugadev, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3dmz: Hexafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dn0: Pentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dn1: Chloropentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dn2: Bromopentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dn3: Iodopentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dn4: Iodobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dn5: Aldose Reductase in complex with novel biarylic inhibitor
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2008-07-01
Authors: Steuber, H., Klebe, G.
PDB entry 3dn6: 1,3,5-trifluoro-2,4,6-trichlorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dn7: Cyclic nucleotide binding regulatory protein from Cytophaga hutchinsonii.
Classification: structural genomics, unknown function
Source organism: Cytophaga hutchinsonii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-07-01
Authors: Osipiuk, J., Maltseva, N., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3dn8: Iodopentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant (seleno version)
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dn9: Carboxysome Subunit, CcmK1 C-terminal deletion mutant
Classification: STRUCTURAL PROTEIN
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2008-07-01
Authors: Tanaka, S., Sawaya, M.R., Yeates, T.O.
PDB entry 3dna: Iodobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant (seleno version)
Classification: HYDROLASE
Source organism: Bacteriophage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-07-01
Authors: Liu, L., Matthews, B.W.
PDB entry 3dnb: HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 1988-03-18
Authors: Prive, G.G., Dickerson, R.E.
PDB entry 3dnc: Carboxysome shell protein, CcmK2 C-terminal deletion mutant, with a closer spacing between hexamers
Classification: STRUCTURAL PROTEIN
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2008-07-01
Authors: Tanaka, S., Sawaya, M.R., Yeates, T.O.
PDB entry 3dnd: cAMP-dependent protein kinase PKA catalytic subunit with PKI-5-24
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2008-07-02
Authors: Schiffer, A., Wendt, K.U.
PDB entry 3dne: cAMP-dependent protein kinase PKA catalytic subunit with PKI-5-24
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-07-02
Authors: Schiffer, A., Wendt, K.U.
PDB entry 3dnf: Structure of (E)-4-Hydroxy-3-methyl-but-2-enyl Diphosphate Reductase, the Terminal Enzyme of the Non-Mevalonate Pathway
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2008-07-02
Authors: Rekittke, I.
PDB entry 3dng: Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-07-02
Authors: Pochetti, G., Montanari, R., Mazza, F.
PDB entry 3dnh: The crystal structure of the protein Atu2129 (unknown function) from Agrobacterium tumefaciens str. C58
Classification: structural genomics, unknown function
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2008-07-02
Authors: Tan, K., Xu, X., Zheng, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3dni: CRYSTALLOGRAPHIC REFINEMENT AND STRUCTURE OF DNASE I AT 2 ANGSTROMS RESOLUTION
Classification: ENDONUCLEASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1992-08-20
Authors: Oefner, C., Suck, D.
PDB entry 3dnj: The structure of the Caulobacter crescentus ClpS protease adaptor protein in complex with a N-end rule peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Caulobacter vibrioides; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2008-07-02
Authors: Wang, K., Roman-Hernandez, G., Grant, R.A., Sauer, R.T., Baker, T.A.
PDB entry 3dnk: Enzyme deglycosylated Human IgG1 Fc fragment
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2008-07-02
Authors: Braden, B.C.
PDB entry 3dnl: Molecular structure for the HIV-1 gp120 trimer in the b12-bound state
Classification: VIRAL PROTEIN
Source organism: HIV-1 M:B_HXB2R
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2008-07-02
Authors: Borgnia, M.J., Liu, J., Bartesaghi, A., Sapiro, G., Subramaniam, S.
PDB entry 3dnm: Crystal Structure Hormone-Sensitive Lipase from a Metagenome Library
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-07-02
Authors: Hwang, K.Y., Nam, K.H.
PDB entry 3dnn: Molecular structure for the HIV-1 gp120 trimer in the unliganded state
Classification: VIRAL PROTEIN
Source organism: HIV-1 M:B_HXB2R
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2008-07-02
Authors: Borgnia, M.J., Liu, J., Bartesaghi, A., Sapiro, G., Subramaniam, S.
PDB entry 3dno: Molecular structure for the HIV-1 gp120 trimer in the CD4-bound state
Classification: VIRAL PROTEIN
Source organism: HIV-1 M:B_HXB2R
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2008-07-02
Authors: Borgnia, M.J., Liu, J., Bartesaghi, A., Sapiro, G., Subramaniam, S.
PDB entry 3dnp: Crystal structure of Stress response protein yhaX from Bacillus subtilis
Classification: structural genomics, unknown function
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2008-07-02
Authors: Chang, C., Tesar, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3dns: The N-terminal domain of Ribosomal-protein-alanine acetyltransferase from Clostridium acetobutylicum ATCC 824
Classification: TRANSFERASE
Source organism: Clostridium acetobutylicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-07-02
Authors: Nocek, B., Hendricks, R., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3dnt: structures of MDT proteins
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2008-07-02
Authors: Schumacher, M.A.
PDB entry 3dnu: structure of MDT protein
Classification: UNKNOWN FUNCTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2008-07-02
Authors: schumacher, M.A.
PDB entry 3dnv: MDT Protein
Classification: Transcription/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2008-07-02
Authors: schumacher, M.A.
PDB entry 3dnx: SPO1766 protein of unknown function from Silicibacter pomeroyi.
Classification: structural genomics, unknown function
Source organism: Silicibacter pomeroyi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2008-07-02
Authors: Osipiuk, J., Mulligan, R., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3dny: Fitting of the eEF2 crystal structure into the cryo-EM density map of the eEF2.80S.AlF4-.GDP complex
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.6 Å
Deposited: 2008-07-03
Authors: Sengupta, J., Frank, J.
PDB entry 3dnz: Thermolysin by LB nanotemplate method before high X-Ray dose on ESRF ID14-2 beamline
Classification: HYDROLASE
Source organism: Bacillus thermoproteolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2008-07-03
Authors: Pechkova, E., Tripathi, S.K., Nicolini, C.
PDB entry 3do0: Thermolysin by classical hanging drop method after high X-Ray dose on esrf ID14-2 beamline
Classification: HYDROLASE
Source organism: Bacillus thermoproteolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2008-07-03
Authors: Pechkova, E., Tripathi, S.K., Nicolini, C.
PDB entry 3do1: Thermolysin by Classical hanging drop method before high X-Ray dose on ESRF ID14-2 beamline
Classification: HYDROLASE
Source organism: Bacillus thermoproteolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2008-07-03
Authors: Pechkova, E., Tripathi, S.K., Nicolini, C.
PDB entry 3do2: Thermolysin by LB nanotemplate method after high X-Ray dose on ESRF ID14-2 beamline
Classification: HYDROLASE
Source organism: Bacillus thermoproteolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2008-07-03
Authors: Pechkova, E., Tripathi, S.K., Nicolini, C.
PDB entry 3do3: Human 1gG1 Fc fragment, 2.5 Angstrom structure
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-07-03
Authors: Braden, B.C.
PDB entry 3do4: Crystal structure of transthyretin variant T60A at acidic pH
Classification: TRANSPORT PROTEIN
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-07-03
Authors: Cendron, L., Zanotti, G., Folli, C., Berni, R.
PDB entry 3do5: Crystal structure of Putative Homoserine Dehydrogenase (NP_069768.1) from ARCHAEOGLOBUS FULGIDUS at 2.20 A resolution
Classification: OXIDOREDUCTASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-07-03
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3do6: Crystal structure of Putative Formyltetrahydrofolate Synthetase (TM1766) from THERMOTOGA MARITIMA at 1.85 A resolution
Classification: LIGASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2008-07-03
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3do7: X-ray structure of a NF-kB p52/RelB/DNA complex
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2008-07-03
Authors: Fusco, A., Huang, D.B., Miller, D., Vu, D., Ghosh, G.
PDB entry 3do8: The crystal structure of the protein with unknown function from Archaeoglobus fulgidus
Classification: TRANSFERASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-07-03
Authors: Zhang, R., Wu, R., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3do9: Crystal structure of protein ba1542 from bacillus anthracis str.ames
Classification: structural genomics, unknown function
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2008-07-03
Authors: Patskovsky, Y., Ozyurt, S., Freeman, J., Iizuka, M., Maletic, M., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3doa: The crystal structure of the fibrinogen binding protein from Staphylococcus aureus
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2008-07-03
Authors: Zhang, R., Wu, R., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3dob: Peptide-binding domain of Heat shock 70 kDa protein F44E5.5 from C.elegans.
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2008-07-03
Authors: Osipiuk, J., Hatzos, C., Gu, M., Zhang, R., Voisine, C., Morimoto, R.I., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)