LiteFold/PDB huggingface dataset:
PDB entry 8xi5: Structure of Eastern Equine Encephalitis VLP in complex with the receptor VLDLR LA3-5
Classification: VIRAL PROTEIN
Source organism: Eastern equine encephalitis virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-19
Authors: Cao, D., Ma, B., Cao, Z., Xu, X., Zhang, X., Xiang, Y.
PDB entry 8xi6: SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-12-19
Authors: Ishimaru, H., Nishimura, M., Shigematsu, H., Marini, M.I., Hasegawa, N., Takamiya, R., Iwata, S., Mori, Y.
PDB entry 8xi7: The Crystal Structure of UCHL1 from Biortus.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-19
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Shen, Z.
PDB entry 8xi8: The Crystal Structure of TAB1 from Biortus.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-12-19
Authors: Wang, F., Cheng, W., Lv, Z., Ju, C., Bao, C.
PDB entry 8xi9: Crystal structure of FRB-FKBP fusion protein in complex with rapamycin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-12-19
Authors: Inobe, T., Sakaguchi, R., Obita, T., Mukaiyama, A., Yokoyama, T., Mizuguchi, M., Akiyama, S.
PDB entry 8xia: X-RAY ANALYSIS OF D-XYLOSE ISOMERASE AT 1.9 ANGSTROMS: NATIVE ENZYME IN COMPLEX WITH SUBSTRATE AND WITH A MECHANISM-DESIGNED INACTIVATOR
Classification: ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1990-10-11
Authors: Carrell, H.L., Glusker, J.P.
PDB entry 8xib: Crystal structure of AtHPPD-2HPA complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.097 Å
Deposited: 2023-12-19
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xic: Structure of Trioxacarcin A covalently bound to guanosine-2'-fluorinated d(AACCGGTT)2
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-12-19
Authors: Gao, R.Q., Cao, C., Tang, G.L.
PDB entry 8xid: DGNNV protrusion domain structure at neutral pH
Classification: VIRAL PROTEIN
Source organism: Dragon grouper nervous necrosis virus
Experimental method: SOLUTION NMR
Deposited: 2023-12-19
Authors: Sterbova, P., Tzou, D.L., Chang, W.H.
PDB entry 8xie: Archaeal exosome complex (Rrp4-Rrp41-Rrp42)
Classification: HYDROLASE
Source organism: Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-12-19
Authors: Kim, H.S., Park, S.H., Kim, S.H., Hwang, K.Y.
PDB entry 8xif: The crystal structure of the AEP domain of VACV D5
Classification: REPLICATION
Source organism: Vaccinia virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2023-12-19
Authors: Gan, J., Zhang, W.
PDB entry 8xig: The crystal structure of the AEP domain of MPXV E5
Classification: REPLICATION
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-12-19
Authors: Gan, J., Zhang, W.
PDB entry 8xih: protein-DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mucilaginibacter paludis DSM 18603; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-19
Authors: Li, Z.
PDB entry 8xii: Crystal structure of AtHPPD-YH23011 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.596 Å
Deposited: 2023-12-19
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xij: Structure of acyltransferase GWT1 bound to palmitoyl-CoA
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-12-19
Authors: Dai, X.L., Li, J.L., Liu, X.Z., Deng, D., Yan, C.Y., Wang, X.
PDB entry 8xik: Structure of acyltransferase GWT1 in complex with manogepix(APX001A)
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2023-12-19
Authors: Dai, X.L., Li, J.L., Liu, X.Z., Deng, D., Wang, X.
PDB entry 8xil: Cellodextrin phosphorylase from Clostridium thermocellum mutant - all cysteine residues were substituted with serines
Classification: CARBOHYDRATE
Source organism: Acetivibrio thermocellus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2023-12-19
Authors: Kuga, T., Sunagawa, N., Igarashi, K.
PDB entry 8xim: PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
Classification: ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
Source organism: Actinoplanes missouriensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1992-04-01
Authors: Janin, J.
PDB entry 8xin: Crystal structure of AtHPPD-YH23023 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.694 Å
Deposited: 2023-12-19
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xio: Structure of L797591-SSTR1 G protein complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-12-19
Authors: Wang, Y., Xu, Y., Xu, H.E., Zhuang, Y.
PDB entry 8xip: Structure of Pasireotide-SSTR1 G protein complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-12-19
Authors: Wang, Y., Xu, Y., Xu, H.E., Zhuang, Y.
PDB entry 8xiq: Structure of L796778-SSTR3 G protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2023-12-19
Authors: Wang, Y., Xu, Y., Xu, H.E., Zhuang, Y.
PDB entry 8xir: Structure of pasireotide-SSTR3 G protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2023-12-19
Authors: Wang, Y., Xu, Y., Xu, H.E., Zhuang, Y.
PDB entry 8xis: Cellodextrin phosphorylase from Clostridium thermocellum mutant - all cysteine residues were substituted with serines
Classification: CARBOHYDRATE
Source organism: Acetivibrio thermocellus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-12-19
Authors: Kuga, T., Sunagawa, N., Igarashi, K.
PDB entry 8xit: Cryo-EM structure of sheep VMAT2 dimer in an atypical fold
Classification: TRANSPORT PROTEIN
Source organism: Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-20
Authors: Lyu, Y., Fu, C., Ma, H., Sun, Z., Su, Z., Zhou, X.
PDB entry 8xiu: Cryo-EM structure of a frog VMAT2 in an apo conformation
Classification: TRANSPORT PROTEIN
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-20
Authors: Lyu, Y., Fu, C., Ma, H., Sun, Z., Su, Z., Zhou, X.
PDB entry 8xiv: Production of D-psicose
Classification: ISOMERASE
Source organism: Kroppenstedtia eburnea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-12-20
Authors: Guo, D.
PDB entry 8xiw: Cryo-EM complex structure between hydroxylase and regulatory component from soluble methane monooxygenase
Classification: OXIDOREDUCTASE
Source organism: Methylosinus sporium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-12-20
Authors: Hwang, Y., Ryu, B., Pozharski, E., Lee, S.J.
PDB entry 8xix: KeDt3e within Co
Classification: ISOMERASE
Source organism: Kroppenstedtia eburnea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-12-20
Authors: Guo, D.
PDB entry 8xiy: Crystal structure of an omega-transaminase mutant I77L/Q97E/H210N/N245D from Aspergillus terreus in complex with PLP
Classification: TRANSFERASE
Source organism: Aspergillus terreus NIH2624
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-12-20
Authors: Lu, Z.Y., Hu, D., Xu, D.Z., He, Y.C.
PDB entry 8xiz: Crystal structure of an epoxide hydrolase mutant A250IC/L344V from Aspergillus usamii E001 at 2.17 Angstroms resolution
Classification: HYDROLASE
Source organism: Aspergillus usamii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.175 Å
Deposited: 2023-12-20
Authors: Hu, B.C., Lu, Z.Y., Tang, C.D., Hu, D.
PDB entry 8xj0: Crystal structure of AmFab mutant - P40C/E165C (Light chain), G10C/P210C(Heavy chain)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-12-20
Authors: Senda, M., Yoshikawa, M., Nakamura, H., Ohkuri, T., Senda, T.
PDB entry 8xj1: Structure of Apo-KeDt3e
Classification: ISOMERASE
Source organism: Kroppenstedtia eburnea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-12-20
Authors: Guo, D.Y.
PDB entry 8xj2: MAT2A in complex with SAM and allosteric inhibitor SCR-7952
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-12-20
Authors: Zhou, F.
PDB entry 8xj3: Crystal structure of methyltransferase CbiL from Akkermansia muciniphila
Classification: TRANSFERASE
Source organism: Akkermansia muciniphila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-20
Authors: Guo, S., Jiang, M., Wang, M.
PDB entry 8xj4: Structure of prostatic acid phosphatase in human semen
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-12-20
Authors: Liu, X.Z., Li, J.L., Deng, D., Wang, X.
PDB entry 8xj5: Crystal structure of AtNATA1 bound to Ornithine and CoA
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2023-12-20
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8xj6: The Cryo-EM structure of MPXV E5 apo conformation
Classification: REPLICATION
Source organism: Monkeypox virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-12-20
Authors: Zhang, W., Liu, Y., Gao, H., Gan, J.
PDB entry 8xj7: The Cryo-EM structure of MPXV E5 in complex with DNA
Classification: REPLICATION
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2023-12-20
Authors: Zhang, W., Liu, Y., Gao, H., Gan, J.
PDB entry 8xj8: The Cryo-EM structure of MPXV E5 C-terminal in complex with DNA
Classification: REPLICATION
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2023-12-20
Authors: Zhang, W., Liu, Y., Gao, H., Gan, J.
PDB entry 8xj9: Crystal Structure of Arabidopsis N-amino acetyltransferase 2 (AtNATA2)
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-12-21
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8xjb: Crystal structure of AtNATA2 bound to Spermine
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-12-21
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8xjc: a novel haemophore of of Riemerella anatipestifer
Classification: TRANSPORT PROTEIN
Source organism: Riemerella anatipestifer
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-12-21
Authors: Zhang, D.D., Chen, T.T.
PDB entry 8xje: Crystal structure of the YqeY protein from Campylobacter jejuni
Classification: UNKNOWN FUNCTION
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-21
Authors: Kim, S.Y., Yoon, S.I.
PDB entry 8xjf: Crystal structure of Arabidopsis N-amino acetyltransferase 2 bound to HEPES, Acetyl CoA, GABA, and glycerol
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-21
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8xjg: Crystal structure of the YqeY protein from Vibrio parahaemolyticus
Classification: UNKNOWN FUNCTION
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-21
Authors: Kim, S.Y., Yoon, S.I.
PDB entry 8xjh: Crystal structure of Arabidopsis N-amino acetyltransferase 2 (AtNATA2) bound to di-CoA
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-12-21
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8xji: Structure of chimeric RyR complex with flubendiamide
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2023-12-21
Authors: Lin, L., Wang, C., Wang, W., Jiang, H., Yuchi, Z.
PDB entry 8xjj: Co-crystal structure of SOS-1 and a potent, selective and orally bioavailable SOS1 inhibitor RGT-018
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-21
Authors: Ren, X.
PDB entry 8xjk: Cloprosetnol bound Prostaglandin F2-alpha receptor-Gq Protein Complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-12-21
Authors: Zhang, X., Li, X., Liu, G., Gong, W.
PDB entry 8xjl: PGF2-alpha bound Prostaglandin F2-alpha receptor-Gq Protein Complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-12-21
Authors: Zhang, X., Li, X., Liu, G., Gong, W.
PDB entry 8xjm: Latanoprost acid bound Prostaglandin F2-alpha receptor-Gq Protein Complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-12-21
Authors: Zhang, X., Li, X., Liu, G., Gong, W.
PDB entry 8xjn: Cloprosetnol bound Thromboxane A2 receptor-Gq Protein Complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-12-21
Authors: Zhang, X., Li, X., Liu, G., Gong, W.
PDB entry 8xjo: U46619 bound Thromboxane A2 receptor-Gq Protein Complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-12-21
Authors: Zhang, X., Li, X., Liu, G., Gong, W.
PDB entry 8xjp: Crystal structure of a sulfotransferase S4 in complex with PAP and 2-Phe-br
Classification: TRANSFERASE
Source organism: Bambusicola thoracicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-22
Authors: Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.
PDB entry 8xjq: Crystal structure of a sulfotransferase S4 in complex with PAP and PNPS
Classification: TRANSFERASE
Source organism: Bambusicola thoracicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-12-22
Authors: Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.
PDB entry 8xjr: Apo form of DNA polymerase SFM4-3 recognizing C2 methyoxy nucleotide
Classification: DNA BINDING PROTEIN
Source organism: Thermus aquaticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-12-22
Authors: Wen, C., Liu, H., Yang, L., Gong, W.
PDB entry 8xjs: Cryo-EM structure of human insulin receptor bound to 3 IGF-I
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2023-12-22
Authors: Xi, Z.
PDB entry 8xjt: Cryo-EM structure of colibactin assembly line polyketide synthase ClbC (ACP-bound state)
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-22
Authors: Kim, J., Kim, M., Kang, J.Y.
PDB entry 8xju: Cryo-EM structure of colibactin assembly line polyketide synthase ClbI (apo state)
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-12-22
Authors: Kim, M., Kim, J., Kang, J.Y.
PDB entry 8xjv: Structural basis for the linker histone H5-nucleosome binding and chromatin compaction
Classification: GENE REGULATION
Source organism: Gallus gallus; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-22
Authors: Li, W.Y., Song, F., Zhu, P.
PDB entry 8xjw: Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target RNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Kurthia massiliensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-12-22
Authors: Tao, X., Ding, H., Wu, S.
PDB entry 8xjx: Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Kurthia massiliensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-12-22
Authors: Tao, X., Ding, H., Wu, S.
PDB entry 8xjy: Cryo-EM structure of colibactin assembly line polyketide synthase ClbI KS-AT didomain crosslinked with ClbI ACP
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-12-22
Authors: Kim, M., Kim, J., Kang, J.Y.
PDB entry 8xjz: Cryo-EM structure of colibactin assembly line polyketide synthase ClbI KS-AT didomain crosslinked with its precursor module, ClbH
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-12-22
Authors: Kim, M., Kim, J., Kang, J.Y.
PDB entry 8xk0: Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in pre-cleavage state
Classification: DNA BINDING PROTEIN
Source organism: Kurthia massiliensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-12-22
Authors: Tao, X., Ding, H., Wu, S.
PDB entry 8xk1: Cryo-EM structure of human insulin receptor bound to 4 IGF-I
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-12-22
Authors: Xi, Z.
PDB entry 8xk2: A neutralizing nanobody VHH60 against wt SARS-CoV-2
Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-12-22
Authors: Lu, Y., Guo, H., Ji, X., Yang, H.
PDB entry 8xk3: Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in target-cleaved state
Classification: DNA BINDING PROTEIN
Source organism: Kurthia massiliensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-12-22
Authors: Tao, X., Ding, H., Wu, S.
PDB entry 8xk4: Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in target-released state
Classification: DNA BINDING PROTEIN/DNA
Source organism: Kurthia massiliensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-12-22
Authors: Tao, X., Ding, H., Wu, S.
PDB entry 8xk5: SNB1G11 Fab bound to SFTSV glycoprotein Gn
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe fever with thrombocytopenia syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-12-22
Authors: Deng, Z.
PDB entry 8xk6: S2A5 Fab bound to SFTSV glycoprotein Gn
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe fever with thrombocytopenia syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-12-22
Authors: Deng, Z.
PDB entry 8xk7: binary complex of DNA polymerase SFM4-3 recognizing C2 methyoxy nucleotide
Classification: DNA BINDING PROTEIN
Source organism: Thermus aquaticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-22
Authors: Wen, C., Liu, H., Yang, L., Gong, W.
PDB entry 8xk8: N1D10 Fab bound to SFTSV glycoprotein-Gn
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe fever with thrombocytopenia syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.53 Å
Deposited: 2023-12-22
Authors: Zhao, H., Deng, Z.
PDB entry 8xk9: ternary complex of DNA polymerase SFM4-3 recognizing C2 methyoxy nucleotide
Classification: DNA BINDING PROTEIN
Source organism: Thermus aquaticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-22
Authors: Wen, C., Liu, H., Yang, L., Gong, W.
PDB entry 8xkc: The structure of HLA-A/Pep16
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-12-23
Authors: Zhang, J.N., Yue, C., Liu, J.
PDB entry 8xkd: beta-1,4-galacosyltransferase
Classification: TRANSFERASE
Source organism: Aggregatibacter actinomycetemcomitans NUM4039
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-12-23
Authors: Luo, G., Huang, Z., Chen, J., Hou, X., Zhu, Y., Ni, D., Xu, W., Zhang, W., Rao, Y., Mu, W.
PDB entry 8xke: The structure of HLA-A/14-3-D
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-12-23
Authors: Zhang, J.N., Yue, C., Liu, J., Sun, Z.Y.
PDB entry 8xkf: Crystal structure of Helicobacter pylori IspDF with substrate CTP
Classification: TRANSFERASE
Source organism: Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-12-23
Authors: Chen, X., Wu, D.
PDB entry 8xkg: Crystal structure of Acinetobacter baumannii IspD
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-12-23
Authors: Chen, X., Wu, D.
PDB entry 8xkh: Structure of chimeric RyR Complex with tetraniliprole
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2023-12-23
Authors: Lin, L., Wang, C., Wang, W., Jiang, H., Yuchi, Z.
PDB entry 8xki: A neutralizing nanobody VHH60 against wt SARS-CoV-2
Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-23
Authors: Lu, Y., Guo, H., Ji, X., Yang, H.
PDB entry 8xkj: Ckappa domain of human immunoglobulin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-12-23
Authors: Yanaka, S., Kodama, A., Miyanoiri, Y., Kato, K.
PDB entry 8xkk: Ckappa domain of mouse immunoglobulin
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2023-12-23
Authors: Yanaka, S., Kodama, A., Miyanoiri, Y., Kato, K.
PDB entry 8xkl: Structure of ACPII-CCPII from cryptophyte algae
Classification: STRUCTURAL PROTEIN
Source organism: Chroomonas placoidea
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-12-23
Authors: Li, X.Y., Mao, Z.Y., Shen, J.R., Han, G.Y.
PDB entry 8xkm: Cryo-EM structure of human insulin receptor bound to 4 IGF-I, conformation 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2023-12-23
Authors: Xi, Z.
PDB entry 8xkn: Cryo-EM structure of tail tube protein
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus halotolerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-12-23
Authors: Zhang, H., Li, Z., Li, X.Z.
PDB entry 8xko: CryoEM structure of compound HNC-1664 bound with RdRP-RNA complex of SARS-CoV-2
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus; Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-12-23
Authors: Li, M., An, L., Hong, Y., Li, S., Zhang, K.
PDB entry 8xkp: Crystal structure of human tyrosine-protein kinase Fes/Fps in complex with compound 17c
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-12-23
Authors: Baba, D., Hanzawa, H.
PDB entry 8xkr: Cryo-EM structure of human insulin receptor bound to 4 IGF-I, conformation 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2023-12-24
Authors: Xi, Z.
PDB entry 8xks: The cryo-EM structure of Orf2971-FtsHi motor complex
Classification: PROTEIN TRANSPORT
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-24
Authors: Wang, N., Li, M.
PDB entry 8xkt: The structure of Spodoptera litura chemosensory protein
Classification: STRUCTURAL PROTEIN
Source organism: Spodoptera litura
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-12-24
Authors: Xie, W., Zhang, J., Jia, Q.
PDB entry 8xku: Cryo-EM structure of the Ycf2-FtsHi motor complex from Arabidopsis in ATP-bound state
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-24
Authors: Liang, K., Zhan, X., Xu, Q., Wu, J., Yan, Z.
PDB entry 8xkv: Cryo-EM structure of the Ycf2-FtsHi motor complex from Arabidopsis in Apo state
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-25
Authors: Liang, K., Zhan, X., Xu, Q., Wu, J., Yan, Z.
PDB entry 8xkw: Structure of the TOM40 complex unannealed
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2023-12-25
Authors: Yang, L.Y., Shen, Q.T.
PDB entry 8xkx: Structure of the TOM40 complex with pre-protein
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-25
Authors: Yang, L.Y., Shen, Q.T.
PDB entry 8xky: Structure of the TOM40 complex annealed
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2023-12-25
Authors: Yang, L.Y., Shen, Q.T.
PDB entry 8xkz: Core region of the citrate-induced human acetyl-CoA carboxylase 1 filament (ACC1-citrate)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl0: Citrate-induced filament of human acetyl-coenzyme A carboxylase 1 (ACC1-citrate)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl1: Core region of the human acetyl-CoA carboxylase 1 filament in complex with acetyl-CoA (ACC1-inact)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl2: Human acetyl-CoA carboxylase 1 filament in complex with acetyl-CoA (ACC1-inact)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl3: Structure of human propionyl-CoA carboxylase at apo-state (PCC-Apo)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl4: Structure of human propionyl-CoA carboxylase in complex with acetyl-CoA (PCC-ACO)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl5: Structure of human propionyl-CoA carboxylase in complex with propionyl-CoA (PCC-PCO)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl6: Structure of human 3-methylcrotonyl-CoA carboxylase at apo-state (MCC-Apo)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl7: Structure of human 3-methylcrotonyl-CoA carboxylase in complex with acetyl-CoA (MCC-ACO)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl8: Structure of human 3-methylcrotonyl-CoA carboxylase in complex with propionyl-CoA (MCC-PCO)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xl9: Structure of human pyruvate carboxylase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2023-12-25
Authors: Zhou, F.Y., Zhang, Y.Y., Zhou, Q., Hu, Q.
PDB entry 8xla: Mismatch Repair Complex
Classification: DNA BINDING PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-12-25
Authors: Nirwal, S., Nair, D.T.
PDB entry 8xlb: Clamda3 domain of human immunoglobulin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-12-25
Authors: Yanaka, S., Kodama, A., Miyanoiri, Y., Kato, K.
PDB entry 8xlc: Clamda1 domain of human immunoglobulin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-12-25
Authors: Yanaka, S., Kodama, A., Miyanoiri, Y., Kato, K.
PDB entry 8xld: Structure of the GFP:GFP-nanobody complex from Biortus.
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-25
Authors: Wang, F., Cheng, W., Yuan, Z., Lin, D., Bao, C.
PDB entry 8xlf: Structure of chimeric RyR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-12-25
Authors: Lin, L., Wang, C., Wang, W., Jiang, H., Yuchi, Z.
PDB entry 8xlh: Structure of chimeric RyR-I4657M/G4819E
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-12-26
Authors: Lin, L., Wang, C., Wang, W., Jiang, H., Yuchi, Z.
PDB entry 8xli: Structure of the Vo sector of V-ATPase in the adult cortex and hippocampus
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-26
Authors: Zhang, M., Feng, J., Li, Y., Zhu, S.
PDB entry 8xlj: Structure of the native glutamine synthetase in the adult cortex and hippocampus
Classification: CYTOSOLIC PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-26
Authors: Zhang, M., Feng, J., Li, Y., Zhu, S.
PDB entry 8xlk: Structure of native tri-heteromeric GluN1-GluN2A-GluN2B NMDA receptor in rat cortex and hippocampus
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculoides; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-12-26
Authors: Zhang, M., Feng, J., Li, Y., Zhu, S.
PDB entry 8xll: Structure of the native 2-oxoglutarate dehydrogenase complex (OGDHC) in the adult cortex and hippocampus
Classification: TRANSFERASE
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-26
Authors: Zhang, M., Feng, J., Li, Y., Zhu, S.
PDB entry 8xlm: Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-12-26
Authors: Nomai, T., Anraku, Y., Kita, S., Hashiguchi, T., Maenaka, K.
PDB entry 8xln: Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2023-12-26
Authors: Nomai, T., Anraku, Y., Kita, S., Hashiguchi, T., Maenaka, K.
PDB entry 8xlo: FGFR1 kinase domain with a dual-warhead covalent inhibitor CXF-007
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2023-12-26
Authors: Chen, X.J., Chen, Y.H.
PDB entry 8xlp: Structure of inactive Photosystem II associated with CAC antenna from Rhodomonas Salina
Classification: PHOTOSYNTHESIS
Source organism: Rhodomonas salina
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-12-26
Authors: Si, L., Li, M.
PDB entry 8xlq: FGFR4 kinase domain with a dual-warhead covalent inhibitor CXF-007
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-26
Authors: Chen, X.J., Chen, Y.H.
PDB entry 8xlr: Cryo-EM structure of Ca2+-bound TMEM16A in complex with Tamsulosin
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-12-26
Authors: Li, H.L., Li, S.L., Li, S.
PDB entry 8xls: PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335
Classification: PHOTOSYNTHESIS
Source organism: Thalassiosira pseudonana CCMP1335
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-12-26
Authors: Kato, K., Nakajima, Y., Shen, J.R., Nagao, R.
PDB entry 8xlv: Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 spike protein(6P), 1-RBD-up state
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-12-26
Authors: Li, L.J., Gu, Y.H., Shi, K.Y., Qi, J.X., Gao, G.F.
PDB entry 8xlw: Crystal structure of AtHPPD+BBC-OH complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-12-26
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xlx: Complex structure of AtHPPD with LB600
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-12-26
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8xly: Crystal structure of AtHPPD-Phe complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.106 Å
Deposited: 2023-12-26
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8xlz: beta-1,4-galacosyltransferase
Classification: TRANSFERASE
Source organism: Aggregatibacter actinomycetemcomitans NUM4039
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-12-26
Authors: Luo, G., Huang, Z., Chen, J., Hou, X., Zhu, Y., Ni, D., Xu, W., Zhang, W., Rao, Y., Mu, W.
PDB entry 8xm1: Phytase mutant APPAmut4
Classification: HYDROLASE
Source organism: Yersinia intermedia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-27
Authors: Tu, T., Wang, Q.
PDB entry 8xm2: The mutant crystal structure of phytase APPAmut9 from Yersinia intermedia
Classification: HYDROLASE
Source organism: Yersinia intermedia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-12-27
Authors: Tu, T., Dong, R.Y.
PDB entry 8xm3: Methionyl-tRNA synthetase from Staphylococcus aureus complexed with a chlorhexidine derivative and ATP
Classification: LIGASE
Source organism: Staphylococcus aureus subsp. aureus COL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-12-27
Authors: Lu, F., Xia, K., Yi, J., Chen, B., Luo, Z., Xu, J., Gu, Q., Zhou, H.
PDB entry 8xm4: Methionyl-tRNA synthetase from Staphylococcus aureus in complex with chlorhexidine and ATP
Classification: LIGASE
Source organism: Staphylococcus aureus subsp. aureus COL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2023-12-27
Authors: Lu, F., Xia, K., Yi, J., Chen, B., Luo, Z., Xu, J., Gu, Q., Zhou, H.
PDB entry 8xm5: Cryo-EM structure of SARS-CoV-2 Omicron EG.5 spike protein(6P), RBD-closed state
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2023-12-27
Authors: Li, L.J., Gu, Y.H., Shi, K.Y., Qi, J.X., Gao, G.F.
PDB entry 8xm6: Cryo-EM structure of human ZnT1 WT, in the absence of zinc, determined in an outward-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2023-12-27
Authors: Qu, Q., Long, Y., Zhou, Z.
PDB entry 8xm7: Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.91 Å
Deposited: 2023-12-27
Authors: Kukimoto-Niino, M., Katsura, K., Ishizuka-Katsura, Y., Mishima-Tsumagari, C., Yonemochi, M., Inoue, M., Nakagawa, R., Kaushik, R., Zhang, K.Y.J., Shirouzu, M.
PDB entry 8xma: Cryo-EM structure of human ZnT1 WT, in the presence of zinc, determined in an outward-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-12-27
Authors: Qu, Q., Long, Y., Zhou, Z.
PDB entry 8xmb: NTP-bound Pol IV transcription elongation complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-27
Authors: Huang, K., Fang, C.L., Zhang, Y.
PDB entry 8xmc: Post-translocated Pol IV transcription elongation complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-27
Authors: Huang, K., Fang, C.L., Zhang, Y.
PDB entry 8xmd: Pre-translocated Pol IV transcription elongation complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-27
Authors: Huang, K., Fang, C.L., Zhang, Y.
PDB entry 8xme: Backtracked Pol IV transcription elongation complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-27
Authors: Huang, K., Fang, C.L., Zhang, Y.
PDB entry 8xmf: Cryo-EM structure of human ZnT1 WT at a low PH, in the presence of zinc, determined in an inward-facing conformation.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2023-12-27
Authors: Qu, Q., Long, Y., Zhou, Z.
PDB entry 8xmg: Cryo-EM structure of SARS-CoV-2 Omicron HV.1 spike protein(6P), RBD-closed state
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-12-27
Authors: Li, L.J., Gu, Y.H., Shi, K.Y., Qi, J.X., Gao, G.F.
PDB entry 8xmh: Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, vertical C2 symmetry axis
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-12-27
Authors: Chang, Y.K., Chiang, W.T., Hu, N.J., Tsai, M.D.
PDB entry 8xmi: Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, C1 symmetry
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-27
Authors: Chang, Y.K., Chiang, W.T., Hu, N.J., Tsai, M.D.
PDB entry 8xmj: Cryo-EM structure of human ZnT1 WT, in the presence of zinc, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2023-12-27
Authors: Qu, Q., Long, Y., Zhou, Z.
PDB entry 8xmk: Local refinement of SRCR5-9 domains
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-12-27
Authors: Xu, H., Su, X.D.
PDB entry 8xml: Cryo-EM structure of the Apo CCR8-Gi complex
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2023-12-27
Authors: Peng, Q., Jiang, H.H., Cheng, X.Y., Li, J., Zhang, J.
PDB entry 8xmm: Voltage-gated sodium channel Nav1.7 variant M9
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-12-27
Authors: Yan, N., Li, Z., Wu, Q., Huang, G.
PDB entry 8xmn: Voltage-gated sodium channel Nav1.7 variant M2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-12-27
Authors: Yan, N., Li, Z., Wu, Q., Huang, G.
PDB entry 8xmo: Voltage-gated sodium channel Nav1.7 variant M4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-12-27
Authors: Yan, N., Li, Z., Wu, Q., Huang, G.
PDB entry 8xmp: Structure of CD163 in complex with Hb-Hp
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-12-27
Authors: Xu, H., Su, X.D.
PDB entry 8xmq: Structure of dimeric CD163 in complex with Hb-Hp
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-12-27
Authors: Xu, H., Su, X.D.
PDB entry 8xms: Crystal structure of Porcine Circovirus type II Rep ATPase domain
Classification: VIRAL PROTEIN
Source organism: Porcine circovirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-12-28
Authors: Guan, S.Y., Song, Y.F.
PDB entry 8xmt: Cryo-EM structure of SARS-CoV-2 Omicron EG.5.1 spike protein(6P), RBD-closed state
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-12-28
Authors: Li, L.J., Gu, Y.H., Shi, K.Y., Qi, J.X., Gao, G.F.
PDB entry 8xmw: Local refinement of Hb-Hp bind to CD163
Classification: EXOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-12-28
Authors: Xu, H., Su, X.D.
PDB entry 8xmz: Crystal structure of a novel porphyran-binding carbohydrate binding module
Classification: SUGAR BINDING PROTEIN
Source organism: Aquimarina sp. BL5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-12-28
Authors: Mei, X.W., Chang, Y.G.
PDB entry 8xn1: Cryo-EM structure of human ZnT3, in the presence of zinc, determined in an inward-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-12-28
Authors: Zhu, Z., Qu, Q., Long, Y., Zhou, Z.
PDB entry 8xn2: SARS-CoV-2 Omicron EG.5.1 RBD in complex with human ACE2 (local refined from the spike protein)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-12-28
Authors: Li, L.J., Gu, Y.H., Shi, K.Y., Qi, J.X., Gao, G.F.
PDB entry 8xn3: SARS-CoV-2 Omicron HV.1 RBD in complex with human ACE2 (local refinement from the spike protein)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-12-28
Authors: Li, L.J., Gu, Y.H., Shi, K.Y., Qi, J.X., Gao, G.F.
PDB entry 8xn4: Cryo-EM structure of the ClpP degradation system in Streptomyces hawaiiensis
Classification: HYDROLASE
Source organism: Streptomyces hawaiiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.34 Å
Deposited: 2023-12-29
Authors: Xu, X., Long, F.
PDB entry 8xn5: Cryo-EM structure of SARS-CoV-2 Omicron EG.5.1 spike protein(6P) in complex with human ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-12-29
Authors: Li, L.J., Gu, Y.H., Shi, K.Y., Qi, J.X., Gao, G.F.
PDB entry 8xn6: The Crystal Structure of GSK3b from Biortus.
Classification: TRANSFERASE
Source organism: Trieres chinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-29
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Wu, B.
PDB entry 8xn7: Crystal structure of HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 9f
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-12-29
Authors: Huang, W.X., Liu, R., Ding, K.
PDB entry 8xn8: The Crystal Structure of SRC from Biortus.
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-29
Authors: Wang, F., Cheng, W., Yuan, Z., Lin, D., Bao, C.
PDB entry 8xna: Crystal structure of serine hydroxymethyltransferase 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2023-12-29
Authors: Fan, S., Lv, R., Wang, C., Tang, M., Wei, X., Jin, Y., Yang, Z.
PDB entry 8xnb: Cryo-EM structure of Deinococcus radiodurans BamA
Classification: MEMBRANE PROTEIN
Source organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-12-29
Authors: Qian, H.W., Wang, Z.Z.
PDB entry 8xnd: Crystal structure of serine hydroxymethyltransferase 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2023-12-29
Authors: Fan, S., Wei, X., Lv, R., Wang, C., Tang, M., Jin, Y., Yang, Z.
PDB entry 8xne: Crystal structure of measles virus fusion inhibitor M1 complexed with F protein HR1 (HR1-42) (H32 space group)
Classification: ANTIVIRAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.155 Å
Deposited: 2023-12-29
Authors: Oishi, S., Takahara, A., Nakatsu, T.