LiteFold/PDB huggingface dataset:
PDB entry 9c58: AP-3 bound to myristoylated Arf1 (Q71L)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2024-06-06
Authors: Begley, M.C., Baker, R.W.
PDB entry 9c59: Human AP-3 dimer bound to myristoylated Arf1 (Q71L) and LAMP1 cargo on a lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-06-06
Authors: Begley, M.C., Baker, R.W.
PDB entry 9c5a: AP-3 Arf1 dimeric interface, focused refinement
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-06-06
Authors: Begley, M.C., Baker, R.W.
PDB entry 9c5b: AP-3 bound to myristoylated Arf1 (Q71L) and LAMPI on a lipid nanodisc; combined map
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-06-06
Authors: Begley, M.C., Baker, R.W.
PDB entry 9c5c: Structure of Human Adaptor Protein Complex AP-3 in the Apo State
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-06-06
Authors: Begley, M.C., Baker, R.W.
PDB entry 9c5d: E. coli peptidyl-prolyl cis-trans isomerase containing (2S,3S)-4-Fluorovaline
Classification: ISOMERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-06-06
Authors: Frkic, R.L., Jackson, C.J.
PDB entry 9c5e: Covalent Complex Between Parkin Catalytic (Rcat) Domain and Ubiquitin
Classification: LIGASE
Source organism: Drosophila melanogaster; Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-06-06
Authors: Connelly, E.M., Rintala-Dempsey, A.C., Gundogdu, M., Freeman, E.A., Koszela, J., Aguirre, J.D., Zhu, G., Kamarainen, O., Tadayon, R., Walden, H., Shaw, G.S.
PDB entry 9c5f: Crystal Structure Analysis of human PRKCB
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-06-06
Authors: Seo, H.-S., Oh, B.-C., Dhe-Paganon, S.
PDB entry 9c5g: Structure of R. leguminosarum CapW bound to single-stranded DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Rhizobium leguminosarum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2024-06-06
Authors: Blankenchip, C.L., Corbett, K.D.
PDB entry 9c5h: Trypanosoma cruzi beta-3-HBDH structure in complex with NADPH and malonate
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-06-06
Authors: Hashimoto, H., Debler, E.W.
PDB entry 9c5i: Trypanosoma cruzi beta-3-HBDH APO structure (C2 space group)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-06-06
Authors: Hashimoto, H., Debler, E.W.
PDB entry 9c5j: Trypanosoma cruzi beta-3-HBDH APO structure (P43212 space group)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-06-06
Authors: Hashimoto, H., Debler, E.W.
PDB entry 9c5k: Trypanosoma cruzi R19T/K20S/C64Y mutant beta-3-HBDH structure in complex with NADPH and malonate
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2024-06-06
Authors: Hashimoto, H., Debler, E.W.
PDB entry 9c5l: Trypanosoma cruzi beta-3-HBDH R19T/K20S/C64Y mutant in complex with NADH and malonate (C2 space group)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-06-06
Authors: Hashimoto, H., Debler, E.W.
PDB entry 9c5m: Trypanosoma cruzi R19T/K20S/C64Y mutant beta-3-HBDH structure in complex with NADH and malonate (P1 space group)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-06-06
Authors: Hashimoto, H., Debler, E.W.
PDB entry 9c5n: Trypanosoma cruzi R19T/K20S/C64Y mutant beta-3-HBDH APO structure
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-06-06
Authors: Hashimoto, H., Debler, E.W.
PDB entry 9c5o: Trypanosoma cruzi R42F mutant beta-3-HBDH structure
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-06-06
Authors: Hashimoto, H., Debler, E.W.
PDB entry 9c5p: Inhibitor bound VIM1
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2024-06-06
Authors: Fischmann, T.O., Scapin, G.
PDB entry 9c5q: Human DNA polymerase theta helicase domain in microhomology annealed state 2, dimer form
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-06
Authors: Ito, F., Li, Z., Chen, X.S.
PDB entry 9c5r: Structure of recombinantly assembled alpha-synuclein variant fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-06-06
Authors: Sun, C.Q., Zhou, K., DePaola IV, P., Lee, V.M.Y., Li, C., Zhou, Z.H., Rodriguez, J.A., Peng, C., Jiang, L.
PDB entry 9c5s: Disulfide-linked, antiparallel p53-derived peptide dimer (CV1)
Classification: UNKNOWN FUNCTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2024-06-06
Authors: Vithanage, N., Kreitler, D.K., DiGiorno, M.C., Victorio, C.G., Sawyer, N., Outlaw, V.K.
PDB entry 9c5t: Cryo EM structure of DCAF2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-06-06
Authors: McMahon, E.J., Wang, W.
PDB entry 9c5u: Cryo EM structure of DCAF2:Compound 1 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-06-06
Authors: McMahon, E.J., Wang, W.
PDB entry 9c5v: Cryo EM structure of a DCAF2:degrader:BRD4 ternary complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-06-06
Authors: McMahon, E.J., Wang, W.
PDB entry 9c5w: Crystal structure of cyclodehydratase RohQ in complex with imidazole
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas brassicacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-06-06
Authors: Wei, Z.-W., Ryan, K.S.
PDB entry 9c5x: Molecular basis for HerA-Duf supramolecular complex in anti-phage defense - Assembly 3
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus sp. HMF5848
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-06-06
Authors: Rish, A.D., Fu, T.M., Fosuah, E.
PDB entry 9c5y: Structure of the amino-terminal domain of kainate receptor GluK2 in the apo state
Classification: STRUCTURAL PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-07
Authors: Changping, Z., Nami, T.
PDB entry 9c5z: Structure of Ligand binding and transmembrane domains of kainate receptor Gluk2 in apo state
Classification: STRUCTURAL PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2024-06-07
Authors: Changping, Z., Nami, T.
PDB entry 9c60: CryoEM structure of kainate receptor Gluk2 in apo state
Classification: STRUCTURAL PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-06-07
Authors: Changping, Z., Nami, T.
PDB entry 9c61: Crystal structure of the human LRRK2 WDR domain in complex with CACHE1193-26
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-06-07
Authors: Zeng, H., Dong, A., Kutera, M., Ilyassov, O., Seitova, A., Loppnau, P., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Halabelian, L.
PDB entry 9c62: P400 subcomplex of the native human TIP60 complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.28 Å
Deposited: 2024-06-07
Authors: Yang, Z., Mameri, A., Florez Ariza, A.J., Cote, J., Nogales, E.
PDB entry 9c63: High resolution structure of cytidine deaminase T6S toxin from Pseudomonas syringae
Classification: TOXIN
Source organism: Pseudomonas syringae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2024-06-07
Authors: Yin, L., Shi, K., Aihara, H.
PDB entry 9c64: Cytidine deaminase T6S toxin from Pseudomonas syringae complexed with substrate DNA
Classification: TOXIN/DNA
Source organism: Pseudomonas syringae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-06-07
Authors: Shi, K., Yin, L., Aihara, H.
PDB entry 9c65: Crystal structure of Staphylococcal Superantigen-Like protein 11 in complex with SB618
Classification: SUGAR BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.458 Å
Deposited: 2024-06-07
Authors: Finton, S., Birrane, G.
PDB entry 9c66: Structure of the Mena EVH1 domain bound to the polyproline segment of PTP1B
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-06-07
Authors: LaComb, L., Fedorov, E., Bonanno, J.B., Almo, S.C., Ghosh, A.
PDB entry 9c67: cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in apo form
Classification: ANTIVIRAL PROTEIN
Source organism: Bacteroidales bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-06-07
Authors: Majumder, P., Patel, D.J.
PDB entry 9c68: The CRISPR associated CARF-adenosine deaminase Cad1-CARF in the cA6 bound form
Classification: Antiviral Protein/RNA
Source organism: Bacteroidales bacterium; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-06-07
Authors: Majumder, P., Patel, D.J.
PDB entry 9c69: The CRISPR associated CARF-adenosine deaminase, Cad1-CARF in the cA4 bound form
Classification: Antiviral Protein/RNA
Source organism: Bacteroidales bacterium; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-06-07
Authors: Majumder, P., Patel, D.J.
PDB entry 9c6a: The CRISPR associated adenosine deaminase Cad1-CARF in the apo form
Classification: CYTOSOLIC PROTEIN
Source organism: Bacteroidales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2024-06-07
Authors: Majumder, P., Patel, D.J.
PDB entry 9c6b: PP2A:B55-p107 substrate complex
Classification: HYDROLASE/SUBSTRATE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-06-07
Authors: Page, R., Peti, W., Padi, S., Godek, R.J.
PDB entry 9c6c: cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in apo form with ATP (symmetric sites).
Classification: ANTIVIRAL PROTEIN
Source organism: Bacteroidales bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-06-07
Authors: Majumder, P., Patel, D.J.
PDB entry 9c6d: Crystal structure of mutant NonPro1 Tautomerase Superfamily Member 8U6-S1P in complex with 3-bromopropiolate inhibitor
Classification: ISOMERASE/INHIBITOR
Source organism: Sulfurovum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-06-07
Authors: Hardtke, H.A., Venkat Ramani, M.K., Zhang, Y.J.
PDB entry 9c6e: High-resolution structure of bovine (3-367)Arrestin-1 in a pre-activated conformation
Classification: SIGNALING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-06-07
Authors: Salom, D., Palczewski, K., Kiser, P.D.
PDB entry 9c6f: cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in apo form with ATP (Asymmetric sites).
Classification: ANTIVIRAL PROTEIN
Source organism: Bacteroidales bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-06-07
Authors: Majumder, P., Patel, D.J.
PDB entry 9c6g: Mcm double hexamer from human
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.26 Å
Deposited: 2024-06-07
Authors: Liu, C., Xu, N., Lin, Q.
PDB entry 9c6h: [d3] Tensegrity triangle with deazapurine center strand (strand 3) in R3
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.18 Å
Deposited: 2024-06-07
Authors: Vecchioni, S., Sha, R., Ohayon, Y., Galindo, M., Lopez-Chamorro, C., Jong, M.
PDB entry 9c6i: Cryo-EM structure of a group IIC intron RNA
Classification: RNA
Source organism: Oceanobacillus iheyensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2024-06-07
Authors: Toor, N.
PDB entry 9c6j: Group IIC intron embedded with the TPP riboswitch
Classification: RNA
Source organism: Oceanobacillus iheyensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2024-06-07
Authors: Toor, N.
PDB entry 9c6k: Cryo-EM structure of the TPP riboswitch embedded in an RNA scaffold bound to thiamine pyrophosphate
Classification: RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-06-07
Authors: Toor, N.
PDB entry 9c6l: Yasminevirus c12orf29, a 5' to 3' RNA ligase
Classification: LIGASE
Source organism: Yasminevirus sp. GU-2018
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-06-07
Authors: Hu, Y., Lopez, V.A., Tagliabracci, V.S., Tomchick, D.R.
PDB entry 9c6m: Yasminevirus c12orf29, a 5' to 3' RNA ligase, K73M mutant
Classification: LIGASE
Source organism: Yasminevirus sp. GU-2018
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-06-07
Authors: Hu, Y., Lopez, V.A., Tagliabracci, V.S., Tomchick, D.R.
PDB entry 9c6n: ARP module of the human TIP60 complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-06-07
Authors: Yang, Z., Mameri, A., Florez Ariza, A.J., Cote, J., Nogales, E.
PDB entry 9c6o: Merbecovirus MOW15-22 Spike glycoprotein RBD bound to the P. davyi ACE2
Classification: VIRAL PROTEIN
Source organism: Merbecovirus; Pteronotus davyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-06-07
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9c6p: X-ray crystal structure of AmpC beta-lactamase with inhibitor
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.663 Å
Deposited: 2024-06-08
Authors: Liu, F., Shoichet, B.K.
PDB entry 9c6q: Structure of V. cholerae monomeric DdmD bound with ssDNA
Classification: IMMUNE SYSTEM/DNA
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-06-08
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 9c6r: Blood cell-specific tubulin in complex with Cryptophycin-52
Classification: CELL CYCLE
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-08
Authors: Montecinos, F.
PDB entry 9c6s: 18-mer blood cell-specific tubulin in complex with Cryptophycin-52
Classification: CELL CYCLE
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-06-08
Authors: Montecinos, F.
PDB entry 9c6t: Structure of the Human ISM1 TSR-AMOP domains
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2024-06-08
Authors: Stayrook, S., Li, T., Klein, D.E.
PDB entry 9c6u: [d2d3] Tensegrity triangle with deazapurine center and helical strands (strands 2+3) with P63 symmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5 Å
Deposited: 2024-06-09
Authors: Vecchioni, S., Sha, R., Ohayon, Y., Galindo, M., Lopez-Chamorro, C., Jong, M., Woloszyn, K.
PDB entry 9c6v: Crystal Structure of a single chain trimer composed of HLA-B*39:06 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2 (1 molecule/asymmetric unit)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-06-09
Authors: Sharma, R., Amdare, N.P., Celikgil, A., Garforth, S.J., DiLorenzo, T.P., Almo, S.C., Ghosh, A.
PDB entry 9c6w: Crystal Structure of a single chain trimer composed of HLA-B*39:06 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2 (2 molecules/asymmetric unit)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-06-09
Authors: Sharma, R., Amdare, N.P., Celikgil, A., Garforth, S.J., DiLorenzo, T.P., Almo, S.C., Ghosh, A.
PDB entry 9c6x: Crystal Structure of a single chain trimer composed of HLA-B*39:01 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-06-09
Authors: Sharma, R., Amdare, N.P., Celikgil, A., Garforth, S.J., DiLorenzo, T.P., Almo, S.C., Ghosh, A.
PDB entry 9c6y: Crystal structure of SARS-CoV-2 XBB.1.5 RBD bound to COV2-3906 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2024-06-10
Authors: Buchman, C.D., Crowe, J.E.
PDB entry 9c6z: Crystal structure of Staphylococcal Superantigen-Like protein 11 in complex with FB127
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.137 Å
Deposited: 2024-06-10
Authors: Finton, S., Birrane, G.
PDB entry 9c72: Structure of the ASH3 domain of Drosophila melanogaster Spd-2
Classification: CYTOSOLIC PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-06-10
Authors: Johnson, S., Feng, Z., Lea, S.M., Raff, J.W.
PDB entry 9c73: Hybrid G-quadruplex from Tetrahymena thermophila telomeric sequence in complex with TrisQO
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-06-10
Authors: Ali, A., Yatsunyk, L.A.
PDB entry 9c74: superfolder Green Fluorescent Protein with meta-nitro-tyrosine incorporated at position 66
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2024-06-10
Authors: Phillips-Piro, C.M., Broughton, D.P.
PDB entry 9c75: The crystal structure of HIV-1 Rev Response Element Stem-Loop II G34U mutant in complex with a Fab
Classification: RNA/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2024-06-10
Authors: Ojha, M., Koirala, D.
PDB entry 9c76: LRRK2 Roc domain RP (Ras-pocket) complexed to Divarasib
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-06-10
Authors: Zhu, L.Y., Guiley, K.Z., Shokat, K.M.
PDB entry 9c77: cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.
Classification: ANTIVIRAL PROTEIN/RNA
Source organism: Bacteroidales bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-10
Authors: Majumder, P., Patel, D.J.
PDB entry 9c79: Human monoclonal antibody MAD21-101 bound to the N-terminus of cleaved circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2024-06-10
Authors: Moskovitz, R., Wilson, I.A.
PDB entry 9c7a: Crystal structure of R149W neurodevelopmental disease-associated U2AF2 variant
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-06-10
Authors: Maji, D., Jenkins, J.L., Kielkopf, C.L.
PDB entry 9c7b: Crystal structure of R150H neurodevelopmental disease-associated U2AF2 variant
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-06-10
Authors: Maji, D., Jenkins, J.L., Kielkopf, C.L.
PDB entry 9c7c: Diheteromeric GluN1/GluN2A (delM653) in nanodisc complexed with glycine, glutamate, and GNE-4123, open conformation
Classification: TRANSPORT PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-10
Authors: Jalali-Yazdi, F., Kim, J., Gouaux, E.
PDB entry 9c7d: Human monoclonal antibody MAD22-38 bound to the N-terminus of cleaved circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-06-10
Authors: Moskovitz, R., Wilson, I.A.
PDB entry 9c7e: Diheteromeric GluN1/GluN2A (delM653) in nanodisc complex with glycine, glutamate, and GNE-4123, open conformation, C2 symmetry
Classification: TRANSPORT PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-06-10
Authors: Jalali-Yazdi, F., Kim, J., Gouaux, E.
PDB entry 9c7f: Human monoclonal antibody MAD24-01 bound to the N-terminus of cleaved circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-06-10
Authors: Moskovitz, R., Wilson, I.A.
PDB entry 9c7h: Cryo-EM structure of respiratory supercomplex III
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-06-10
Authors: Zhang, Z., Maharjan, R., Tringides, M.
PDB entry 9c7i: Crystal structure of caryolan-1-ol synthase from S. griseus with PEG molecule in the active site
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-06-10
Authors: Prem Kumar, R., Matos, J.O., Oprian, D.D.
PDB entry 9c7j: Crystal structure of caryolan-1-ol synthase complexed with 2-fluorofarnesyl diphosphate
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-06-10
Authors: Prem Kumar, R., Black, B.Y., Oprian, D.D.
PDB entry 9c7k: Crystal structure of pentalenene synthase variant F76A with PEG molecule in the active site
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces exfoliatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-06-10
Authors: Prem Kumar, R., Ellenburg, W.H., Oprian, D.D.
PDB entry 9c7l: Crystal structure of pentalenene synthase variant F76A complexed with 2-fluorofarnesyl diphosphate
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces exfoliatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-06-10
Authors: Prem Kumar, R., Ellenburg, W.H., Oprian, D.D.
PDB entry 9c7m: Crystal structure of pentalenene synthase variant F76A complexed with 12,13-difluorofarnesyl diphosphate
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces exfoliatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-06-10
Authors: Prem Kumar, R., Ellenburg, W.H., Oprian, D.D.
PDB entry 9c7n: Crystal Structure of the GL3 ACT-like Domain
Classification: LIPID BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-06-10
Authors: Ghanbarpour, A., Lee, Y.S., Silwal, J., Geiger, J.H., Grotewold, E.
PDB entry 9c7o: Crystal Structure of the Maize R ACT-like Domain
Classification: LIPID BINDING PROTEIN
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.292 Å
Deposited: 2024-06-10
Authors: Silwal, J., Ghanbarpour, A., Lee, Y.S., Geiger, J.H., Grotewold, E.
PDB entry 9c7p: Diheteromeric GluN1/GluN2A (delM653) in digitonin complexed with glycine, glutamate, and GNE-4123
Classification: TRANSPORT PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.61 Å
Deposited: 2024-06-10
Authors: Jalali-Yazdi, F., Kim, J., Gouaux, E.
PDB entry 9c7q: Diheteromeric NMDA receptor GluN1/GluN2A, in complex with glycine and glutamate
Classification: TRANSPORT PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2024-06-11
Authors: Jalali-Yazdi, F., Kim, J., Gouaux, E.
PDB entry 9c7r: Diheteromeric GluN1/GluN2A (M817V) in digitonin complexed with glycine, glutamate, and GNE-4123
Classification: TRANSPORT PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2024-06-11
Authors: Jalali-Yazdi, F., Kim, J., Gouaux, E.
PDB entry 9c7s: Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-06-11
Authors: Binshtein, E., Crowe, J.E.
PDB entry 9c7t: PP2A:B55-Eya3 substrate complex
Classification: HYDROLASE/SUBSTRATE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-06-11
Authors: Page, R., Peti, W., Padi, S., Godek, R.J.
PDB entry 9c7u: Structure of the human truncated BOS complex in GDN
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-06-11
Authors: Nguyen, V.N., Tomaleri, G.P., Voorhees, R.M.
PDB entry 9c7v: Structure of the human BOS:human EMC complex in GDN
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2024-06-11
Authors: Nguyen, V.N., Tomaleri, G.P., Voorhees, R.M.
PDB entry 9c7w: human OC43 Main Protease (1-303) in complex with potent inhibitor
Classification: VIRAL PROTEIN
Source organism: Human coronavirus OC43
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-06-11
Authors: Tang, J.Y., Knapp, M.S.
PDB entry 9c7x: Crystal structure of SARS-CoV-2 antibody 1H06 in complex with a HR2 peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-06-11
Authors: Van Wazer, D.J., Zhou, T., Kwong, P.D.
PDB entry 9c7y: Structure Of Respiratory Syncytial Virus Polymerase in complex with JNJ-2729
Classification: VIRAL PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Human respiratory syncytial virus A2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-06-11
Authors: Yin, Y., Tran, M.T., Yu, X., Jonckers, T.
PDB entry 9c7z: Hallucinated C3 protein assembly HALC3_919
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-06-11
Authors: Ragotte, R., Bera, A., Milles, L.F., Wicky, B.I.M., Baker, D.
PDB entry 9c80: Co-structure of SARS-CoV-2 (COVID-19 with covalent inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-06-11
Authors: Ornelas, E., Knapp, M.S.
PDB entry 9c81: X-ray crystal structure of AmpC beta-lactamase with inhibitor
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-06-11
Authors: Liu, F., Shoichet, B.K., Bassim, V.
PDB entry 9c82: Structure of human ULK1C:PI3KC3-C1 supercomplex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.84 Å
Deposited: 2024-06-11
Authors: Chen, M., Hurley, J.H.
PDB entry 9c83: X-ray crystal structure of AmpC beta-lactamase with inhibitor
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-06-11
Authors: Liu, F., Shoichet, B.K.
PDB entry 9c84: X-ray crystal structure of AmpC beta-lactamase with inhibitor
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-06-12
Authors: Liu, F., Shoichet, B.K.
PDB entry 9c85: Crystal structure of arabidopsis thaliana acetohydroxyacid synthase in complex with 2022-LS5
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2024-06-12
Authors: Gao, Y., Guddat, L.W.
PDB entry 9c86: Structure of endogenous asymmetric DPYSL2 from rat model of Alzheimer's disease
Classification: NEUROPEPTIDE
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-06-12
Authors: Khalili Samani, E., Keszei, A.F.A., Mazhab-Jafari, M.T.
PDB entry 9c87: Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Poised to Unfold a Linear-Degron DHFR-ssrA Substrate Bound with MTX
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-06-12
Authors: Ghanbarpour, A., Sauer, R.T., Davis, J.H.
PDB entry 9c88: Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Translocating a Portion of a Branched-Degron DHFR Substrate
Classification: CHAPERONE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-06-12
Authors: Ghanbarpour, A., Sauer, R.T., Davis, J.H.
PDB entry 9c89: Crystal structure of outer membrane lipoprotein carrier protein (LolA) from Ehrlichia chaffeensis
Classification: LIPID TRANSPORT
Source organism: Ehrlichia chaffeensis str. Arkansas
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-06-12
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9c8a: Minimal PutA proline dehydrogenase domain (design #2) with the FAD N5 modified with propanal resulting from inactivation with N-allylglycine(replicate #1)
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2024-06-12
Authors: Tanner, J.J.
PDB entry 9c8b: Minimal PutA proline dehydrogenase domain (design #2) with the FAD N5 modified with propanal resulting from inactivation with N-allylglycine (replicate #2)
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-06-12
Authors: Tanner, J.J.
PDB entry 9c8c: Structure of proline utilization A with the FAD covalently-modified by propanal resulting from inactivation with N-allylglycine
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2024-06-12
Authors: Tanner, J.J.
PDB entry 9c8d: mouse Seipin/Adig complex
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-06-12
Authors: Li, C., Han, Y., Wynn, R.M., Chen, Z., Scherer, P.E.
PDB entry 9c8e: mouse Seipin complex
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-06-12
Authors: Li, C., Han, Y., Wynn, R.M., Chen, Z., Scherer, P.E.
PDB entry 9c8f: Cryo-EM Structure of EV-D68 B3 A-Particle
Classification: VIRUS LIKE PARTICLE
Source organism: Human enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-06-12
Authors: Cheng, J., Krug, P.W., Lei, H., Moss, D.L., Huang, R., Lang, Z.C., Morton, A.J., Shen, C., Pierson, T.C., Zhou, T., Ruckwardt, T.J., Kwong, P.D.
PDB entry 9c8g: Cryo-EM Structure of EV-D68 A2 Inactivated Virus Particle
Classification: VIRUS LIKE PARTICLE
Source organism: Human enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2024-06-12
Authors: Cheng, J., Krug, P.W., Lei, H., Moss, D.L., Huang, R., Lang, Z.C., Morton, A.J., Shen, C., Pierson, T.C., Zhou, T., Ruckwardt, T.J., Kwong, P.D.
PDB entry 9c8h: Cryo-EM Structure of EV-D68 A2 A-Particle
Classification: VIRUS LIKE PARTICLE
Source organism: Human enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2024-06-12
Authors: Cheng, J., Krug, P.W., Lei, H., Moss, D.L., Huang, R., Lang, Z.C., Morton, A.J., Shen, C., Pierson, T.C., Zhou, T., Ruckwardt, T.J., Kwong, P.D.
PDB entry 9c8i: Cryo-EM Structure of EV-D68 B3 Inactivated Virus Particle
Classification: VIRUS LIKE PARTICLE
Source organism: Human enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-06-12
Authors: Cheng, J., Krug, P.W., Lei, H., Moss, D.L., Huang, R., Lang, Z.C., Morton, A.J., Shen, C., Pierson, T.C., Zhou, T., Ruckwardt, T.J., Kwong, P.D.
PDB entry 9c8k: Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
Classification: RNA
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-12
Authors: Sherlock, M.E., Kieft, J.S.
PDB entry 9c8l: High-resolution structure of cytochrome c peroxidase from yeast at ambient temperature and ambient pressure
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2024-06-12
Authors: Zawistowski, R.K., Crane, B.R.
PDB entry 9c8m: High-resolution structure of cytochrome c peroxidase from yeast under cryogenic conditions and ambient pressure
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-06-12
Authors: Zawistowski, R.K., Crane, B.R.
PDB entry 9c8n: Crystal Structure of human cyclic GMP-AMP synthase in complex with AMPPNP and compound 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-06-12
Authors: Wang, L., Sietsema, D.
PDB entry 9c8o: High-resolution structure of cytochrome c peroxidase from yeast at ambient temperature and 1.5 kbar
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-06-12
Authors: Zawistowski, R.K., Crane, B.R.
PDB entry 9c8p: High-resolution structure of cytochrome c peroxidase from yeast at ambient temperature and 3.0 kbar
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-06-12
Authors: Zawistowski, R.K., Crane, B.R.
PDB entry 9c8q: Co-structure of Main Protease of SARS-CoV-2 (COVID-19) with covalent inhibitor
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.692 Å
Deposited: 2024-06-12
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9c8r: CryoEM structure of Apo Cryptococcus neoformans H99 Acetyl-CoA Synthetase
Classification: LIGASE
Source organism: Cryptococcus neoformans var. grubii H99
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-06-12
Authors: Xu, Z., Schnicker, N.J., Jezeski, A.J., Krysan, D.J.
PDB entry 9c8s: CryoEM structure of Cryptococcus neoformans H99 Acetyl-CoA Synthetase in complex with adenosine-5'-ethylphosphate
Classification: LIGASE
Source organism: Cryptococcus neoformans var. grubii H99
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2024-06-12
Authors: Xu, Z., Schnicker, N.J., Jezeski, A.J., Krysan, D.J.
PDB entry 9c8t: Crystal Structure of human cyclic GMP-AMP synthase in complex with AMPPNP and compound 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-06-12
Authors: Wang, L., Sietsema, D.
PDB entry 9c8u: Human PRC2 - RvLEAM (short) (1:6 molar ratio), cross-linked 10 min
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-13
Authors: Abe, K.M., Li, G., He, Q., Grant, T., Lim, C.
PDB entry 9c8v: Human DNA polymerase alpha/primase - CHAPSO (4 mM)
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-06-13
Authors: Abe, K.M., Li, G., He, Q., Grant, T., Lim, C.
PDB entry 9c8w: X-ray crystal structure of Methylorubrum extorquens apo LanD
Classification: METAL BINDING PROTEIN
Source organism: Methylorubrum extorquens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-06-13
Authors: Jung, J.J., Lin, C.-Y., Boal, A.K.
PDB entry 9c8x: X-ray crystal structure of Methylorubrum extorquens La(III)-bound LanD
Classification: METAL BINDING PROTEIN
Source organism: Methylorubrum extorquens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-06-13
Authors: Jung, J.J., Lin, C.-Y., Boal, A.K.
PDB entry 9c8y: X-ray crystal structure of Methylorubrum extorquens Ce(III)-bound LanD
Classification: METAL BINDING PROTEIN
Source organism: Methylorubrum extorquens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-06-13
Authors: Jung, J.J., Lin, C.-Y., Boal, A.K.
PDB entry 9c8z: X-ray crystal structure of Methylorubrum extorquens Eu(III)-bound LanD
Classification: METAL BINDING PROTEIN
Source organism: Methylorubrum extorquens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2024-06-13
Authors: Jung, J.J., Lin, C.-Y., Boal, A.K.
PDB entry 9c90: X-ray crystal structure of Methylorubrum extorquens Ho(III)-bound LanD
Classification: METAL BINDING PROTEIN
Source organism: Methylorubrum extorquens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2024-06-13
Authors: Jung, J.J., Lin, C.-Y., Boal, A.K.
PDB entry 9c91: Assimilatory NADPH-dependent sulfite reductase minimal dimer
Classification: FLAVOPROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-06-13
Authors: Ghazi Esfahani, B., Walia, N., Neselu, K., Aragon, M., Askenasy, I., Wei, A., Mendez, J.H., Stroupe, M.E.
PDB entry 9c92: Crystal structure of menin in complex with inhibitor compound 15
Classification: PROTEIN BINDING/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-06-13
Authors: Bester, S.M., Wu, W.-I., Mou, T.-C.
PDB entry 9c93: Crystal structure of menin in complex with inhibitor compound 26
Classification: PROTEIN BINDING/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-06-13
Authors: Bester, S.M., Wu, W.-I., Mou, T.-C.
PDB entry 9c94: Crystal structure of menin in complex with inhibitor compound 20
Classification: PROTEIN BINDING/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-06-13
Authors: Bester, S.M., Wu, W.-I., Mou, T.-C.
PDB entry 9c95: Apo crystal structure of AprG
Classification: TRANSFERASE
Source organism: Streptoalloteichus tenebrarius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-06-13
Authors: Kim, W., Zhang, Y.J.
PDB entry 9c96: Cryo-EM structure of TAP binding protein related (TAPBPR) in complex with HLA-A*02:01 bound to a suboptimal peptide.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-06-13
Authors: Pumroy, R.P., Mallik, L., Sun, Y., Moiseenkova-Bell, Y.V., Sgourakis, N.G.
PDB entry 9c97: Yeast 20S proteasome soaked with BRA-346 fraction
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.33 Å
Deposited: 2024-06-13
Authors: Meneghello, R., Rustiguel, J.K.
PDB entry 9c98: Yeast 20S proteasome soaked with isolated TMC-86A
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2024-06-13
Authors: Meneghello, R., Rustiguel, J.K.
PDB entry 9c99: Crystal structure of AprG complexed with a two-carbon amino sugar fragment (acetamidoacetaldehyde)
Classification: TRANSFERASE
Source organism: Streptoalloteichus tenebrarius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-06-13
Authors: Kim, W., Zhang, Y.J.
PDB entry 9c9a: Crystal structure of AprG complexed with a GlcNAc analog inhibitor
Classification: TRANSFERASE
Source organism: Streptoalloteichus tenebrarius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2024-06-13
Authors: Kim, W., Zhang, Y.J.
PDB entry 9c9b: Crystal structure of AprG complexed with an epimer of the octose product
Classification: TRANSFERASE
Source organism: Streptoalloteichus tenebrarius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-06-13
Authors: Kim, W., Zhang, Y.J.
PDB entry 9c9c: Protein receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-06-13
Authors: MacLachlan, B., Awad, W., Vivian, J., Rossjohn, J.
PDB entry 9c9d: Protein receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-06-13
Authors: MacLachlan, B., Awad, W., Vivian, J., Rossjohn, J.
PDB entry 9c9e: Crystal structure of fluoroacetate dehalogenase 4A from Delftia acidovorans strain D4B
Classification: TRANSFERASE
Source organism: Delftia acidovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.585 Å
Deposited: 2024-06-13
Authors: Caputo, A.T., Hu, M., Scott, C.
PDB entry 9c9f: Crystal structures fluoroacetate dehalogenase D4B from Delftia acidovorans strain D4B
Classification: TRANSFERASE
Source organism: Delftia acidovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-06-13
Authors: Caputo, A.T., Hu, M., Scott, C.
PDB entry 9c9g: S.c INO80 in complex with S.c 0/80 nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-06-13
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9c9h: Interaction of chlorido(8-aminoquinoline)(pentamethylcyclopentadiene)rhodium(III) with HEWL
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-06-14
Authors: Sullivan, M.P., Hartinger, C.G., Steel, T.R., Goldstone, D.C.
PDB entry 9c9i: Structure of the TSC1:WIPI3 complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2024-06-14
Authors: D'Andrea, L., Bayly-Jones, C., Lupton, C.J., Ellisdon, A.M.
PDB entry 9c9k: Anti-OspA Fab 319-33
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2024-06-14
Authors: Rudolph, M.J., Mantis, N.
PDB entry 9c9l: Cryo-EM structure of the C1q A, B-crt, C peptide assembly narrow region
Classification: IMMUNE SYSTEM
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-06-14
Authors: Kreutzberger, M.A., Yu, L.T., Egelman, E.H., Hartgerink, J.D.
PDB entry 9c9m: HIV-1 intasome core bound with DTG
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.01 Å
Deposited: 2024-06-14
Authors: Li, M., Craigie, R.
PDB entry 9c9n: Crystal structure of Fe/2-OG dependent dioxygenase MysH in complex with nickel and succinate
Classification: METAL BINDING PROTEIN
Source organism: Nostoc linckia NIES-25
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-06-14
Authors: Wanniarachchi, T.N., Bruner, S.D.
PDB entry 9c9o: M. tuberculosis PKS13 acyltransferase (AT) domain in complex with SuFEx inhibitor CMX410 - reaction product
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-06-14
Authors: Krieger, I.V., Tang, S., Sacchetini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 9c9p: Cas9 ternary complex, 14-nt sgRNA, State I (linear)
Classification: DNA BINDING PROTEIN
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-14
Authors: Kiernan, K.A., Simonovic, M.
PDB entry 9c9q: Crystal structure of Chaetomium thermophilum Gcn2 HisRS-like domain
Classification: TRANSFERASE
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-06-14
Authors: Bou-Nader, C., Bahmanjah, S., Zhang, J.
PDB entry 9c9r: Crystal structure of Chaetomium thermophilum Gcn2 HisRS-like domain, F1090C/G1326S variant
Classification: TRANSFERASE
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-06-14
Authors: Bou-Nader, C., Bahmanjah, S., Zhang, J.
PDB entry 9c9s: S.c INO80 in complex with S.c 0/40 nucleosome, Class 1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-06-15
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9c9t: S.c INO80 in complex with S.c 0/40 nucleosome, Class 2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-06-15
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9c9u: Cryo-EM structure of the C1q A, B-crt, C peptide full assembly
Classification: IMMUNE SYSTEM
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-06-15
Authors: Kreutzberger, M.A., Yu, L.T., Egelman, E.H., Hartgerink, J.D.
PDB entry 9c9v: HBV capsid with compound 3i
Classification: VIRAL PROTEIN
Source organism: Hepatitis B virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2024-06-16
Authors: Olland, A.M., Suto, R.K., Fontano, E., Colussi, T.
PDB entry 9c9w: Dimerized human TOP3B-TDRD3 core complex with a DNA mismatch bubble
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.25 Å
Deposited: 2024-06-16
Authors: Yang, X.
PDB entry 9c9x: S.c INO80 in complex with Xenopus 0/80 nucleosome, Nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-06-16
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9c9y: Human TOP3B-TDRD3 core complex in DNA pre-cleavage state
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-06-16
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9c9z: S.c INO80 in complex with Xenopus 0/80 nucleosome, INO80 Core
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2024-06-16
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.