LiteFold/PDB huggingface dataset:
PDB entry 8dny: Cryo-EM structure of the human Sec61 complex inhibited by decatransin
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.
PDB entry 8dnz: Cryo-EM structure of the human Sec61 complex inhibited by apratoxin F
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens; Lyngbya bouillonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.
PDB entry 8do0: Cryo-EM structure of the human Sec61 complex inhibited by mycolactone
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.
PDB entry 8do1: Cryo-EM structure of the human Sec61 complex inhibited by ipomoeassin F
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.
PDB entry 8do2: Cryo-EM structure of the human Sec61 complex inhibited by cyclotriazadisulfonamide (CADA)
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.
PDB entry 8do3: Cryo-EM structure of the human Sec61 complex inhibited by eeyarestatin I
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.
PDB entry 8do4: Prefusion-stabilized Nipah virus fusion protein, dimer of trimers
Classification: VIRAL PROTEIN
Source organism: Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-12
Authors: Byrne, P.O., Blade, E.G., McLellan, J.S.
PDB entry 8do5: Crystal structure of NahE in complex with intermediate (R)-4-hydroxy-4-(2-hydroxyphenyl)-2-iminobutanoate
Classification: LYASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-12
Authors: LeVieux, J.A., Hardtke, H.A., Zhang, Y.J.
PDB entry 8do6: The structure of S. epidermidis Cas10-Csm bound to target RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Staphylococcus epidermidis RP62A; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-12
Authors: Paraan, M., Stagg, S.M., Dunkle, J.A.
PDB entry 8do8: Crystal structure ATG9 HDIR in complex with the ATG13:ATG101 HORMA dimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2022-07-12
Authors: Buffalo, C.Z., Ren, X., Yokom, A.L., Hurley, J.H.
PDB entry 8doa: Solution structure of a model HEEH mini-protein (HEEH_TK_rd5_0958)
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2022-07-12
Authors: Houliston, S., Kim, T.-E., Rocklin, G., Arrowsmith, C.H.
PDB entry 8doc: Crystal structure of RPE65 in complex with compound 16e and palmitate
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-12
Authors: Bassetto, M., Kiser, P.D.
PDB entry 8dod: Beta-lactamase CTX-M-14 S130A
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2022-07-12
Authors: Lu, S., Palzkill, T.
PDB entry 8doe: Crystal Structure of CTX-M-14 N106A
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-12
Authors: Lu, S., Palzkill, T.
PDB entry 8dof: Pseudomonas aeruginosa MurC with WYH9-2-P - OSA_001044
Classification: LIGASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-07-13
Authors: Horanyi, P.S., Wang, Y., Todd, M.H., Abendroth, J., Edwards, T., Lorimer, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dog: Dehaloperoxidase B in complex with Bisphenol E
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2022-07-13
Authors: de Serrano, V.S., Yun, D., Ghiladi, R.
PDB entry 8doh: Dehaloperoxidase B in complex with Bisphenol F
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-07-13
Authors: de Serrano, V.S., Yun, D., Ghiladi, R.
PDB entry 8doi: Dehaloperoxidase B in complex with 2,2'-Biphenol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-07-13
Authors: de Serrano, V.S., Yun, D., Ghiladi, R.
PDB entry 8doj: Dehaloperoxidase B in complex with 3,3'-Biphenol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-07-13
Authors: de Serrano, V.S., Yun, D., Ghiladi, R.
PDB entry 8dok: Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer in complex with 8ANC195 and 10-1074
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-13
Authors: Chen, Y., Zhou, F., Huang, R., Tolbert, W., Pazgier, M.
PDB entry 8dol: Mechanism of regulation of the Helicobacter pylori Cagbeta ATPase by CagZ
Classification: TRANSPORT PROTEIN
Source organism: Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-13
Authors: Wu, X., Zhao, Y., Yang, W., Sun, L., Ye, X., Jiang, M., Wang, Q., Wang, Q., Zhang, X., Wu, Y.
PDB entry 8dom: Structure of the N358Y single variant ofserine hydroxymethyltransferase 8 from Glycine max cultivar Essex complexed with PLP
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-07-13
Authors: Korasick, D.A., Beamer, L.J.
PDB entry 8don: Beta-lactamase CTX-M-14 T215A
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2022-07-13
Authors: Lu, S., Palzkill, T.
PDB entry 8dop: Crystal structure of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase from Klebsiella aerogenes (P1 Form)
Classification: ISOMERASE
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-14
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8doq: Crystal structure of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase from Klebsiella aerogenes (P21 Form)
Classification: ISOMERASE
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-07-14
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dor: Crystal structure of Dihydropteridine reductase/oxygen-insensitive NAD(P)H nitroreductase from Klebsiella pneumoniae
Classification: OXIDOREDUCTASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-07-14
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dos: Crystal structure of Ferredoxin (flavodoxin):NADP(+) oxidoreductase from Klebsiella pneumoniae
Classification: OXIDOREDUCTASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.872 Å
Deposited: 2022-07-14
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dot: Structure of a methane clathrate binding protein
Classification: ANTIFREEZE PROTEIN
Source organism: marine sediment metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2022-07-14
Authors: Huard, D.J.E., Lieberman, R.L., Glass, J.B.
PDB entry 8dou: CryoEM structure of the A. aeolicus WzmWzt transporter bound to ADP
Classification: TRANSLOCASE
Source organism: Aquifex aeolicus VF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2022-07-14
Authors: Gorniak, I., Zimmer, J.
PDB entry 8dov: Crystal structure of the Shr Hemoglobin Interacting Domain 2 (HID2) in complex with Hemoglobin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-14
Authors: Macdonald, R., Mahoney, B.J., Cascio, D., Clubb, R.T.
PDB entry 8dow: Cryo-EM structure of HIV-1 Env(CH848 10.17 DS.SOSIP_DT) in complex with DH1030.1 Fab
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2022-07-14
Authors: Gobeil, S., Acharya, P.
PDB entry 8dox: Crystal structure of SARS-CoV-2 main protease in complex with an inhibitor TKB-245
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2022-07-14
Authors: Bulut, H., Hayashi, H., Tsuji, K., Kuwata, N., Das, D., Tamamura, H., Mitsuya, H.
PDB entry 8doy: Crystal structure of SARS-CoV-2 main protease in complex with an inhibitor TKB-198
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2022-07-14
Authors: Bulut, H., Hayashi, H., Tsuji, K., Kuwata, N., Das, D., Tamamura, H., Mitsuya, H.
PDB entry 8doz: Protective antibody against gonococcal lipooligosaccharide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-14
Authors: Beernink, P.T.
PDB entry 8dp0: Structure of p110 gamma bound to the Ras inhibitory nanobody NB7
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2022-07-14
Authors: Burke, J.E., Nam, S.E., Rathinaswamy, M.K., Yip, C.K.
PDB entry 8dp1: Cryo-EM structure of HIV-1 Env(BG505.T332N SOSIP) in complex with DH1030.1 Fab
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2022-07-14
Authors: Gobeil, S., Acharya, P.
PDB entry 8dp2: Crystal Structure of UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from Pseudomonas aeruginosa PAO1 in complex with UMA (Uridine-5'-diphosphate-N-acetylmuramoyl-L-Alanine)
Classification: LIGASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-07-14
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dp3: Crystal structure of coxsackievirus B3 cloverleaf RNA replication element
Classification: IMMUNE SYSTEM/RNA
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-07-14
Authors: Das, N.K., Koirala, D.
PDB entry 8dp4: Beta-lactamase CTX-M-14 T235A
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.402 Å
Deposited: 2022-07-14
Authors: Lu, S., Palzkill, T.
PDB entry 8dp5: Structure of the PEAK3/14-3-3 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-14
Authors: Torosyan, H., Paul, M., Jura, N., Verba, K.A.
PDB entry 8dp6: Crystal structure of Helicobacter pylori EgtU
Classification: TRANSPORT PROTEIN
Source organism: Helicobacter pylori (strain P12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-07-15
Authors: Duncan-Lowey, B., Zhou, W., Kranzusch, P.J.
PDB entry 8dp7: Structure of Helicobacter pylori EgtU bound to EGT
Classification: TRANSPORT PROTEIN
Source organism: Helicobacter pylori (strain P12)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2022-07-15
Authors: Duncan-Lowey, B., Zhou, W., Kranzusch, P.J.
PDB entry 8dp8: Crystal structure of the monomeric AvrM14-A Nudix hydrolase effector from Melampsora lini
Classification: HYDROLASE
Source organism: Melampsora lini
Experimental method: X-RAY DIFFRACTION
Resolution: 2.30001 Å
Deposited: 2022-07-15
Authors: McCombe, C.L., Outram, M.A., Ericsson, D.J., Williams, S.J.
PDB entry 8dp9: Crystal structure of the monomeric AvrM14-B Nudix hydrolase effector from Melampsora lini
Classification: HYDROLASE
Source organism: Melampsora lini
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2022-07-15
Authors: McCombe, C.L., Outram, M.A., Ericsson, D.J., Williams, S.J.
PDB entry 8dpa: Crystal structure of the homodimeric AvrM14-B Nudix hydrolase effector from Melampsora lini
Classification: HYDROLASE
Source organism: Melampsora lini
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-07-15
Authors: McCombe, C.L., Outram, M.A., Ericsson, D.J., Williams, S.J.
PDB entry 8dpb: MeaB in complex with the cobalamin-binding domain of its target mutase with GMPPCP bound
Classification: CHAPERONE
Source organism: Methylorubrum extorquens AM1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2022-07-15
Authors: Vaccaro, F.A., Born, D.A., Drennan, C.L.
PDB entry 8dpc: Crystal structure of carbonic anhydrase from Neisseria gonorrhoeae
Classification: LYASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2022-07-15
Authors: Marapaka, A.K., Das, C., Flaherty, D.P., Yadav, R.
PDB entry 8dpd: superfolder GFP Tyr74pCNPhe mutant
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2022-07-15
Authors: Phillips-Piro, C.M., Papoutsis, B., Piacentini, J.
PDB entry 8dpe: Crystal structure of ATP-dependent RNA helicase DDX42
Classification: SPLICING, HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.531 Å
Deposited: 2022-07-15
Authors: Larsen, N.A., Tsai, J.
PDB entry 8dpf: Cryo-EM structure of the 5HT2C receptor (INI isoform) bound to lorcaserin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-07-15
Authors: Gumpper, R.H., Fay, J.F., Roth, B.L.
PDB entry 8dpg: Cryo-EM structure of the 5HT2C receptor (INI isoform) bound to psilocin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-15
Authors: Gumpper, R.H., Fay, J.F., Roth, B.L.
PDB entry 8dph: Cryo-EM structure of the 5HT2C receptor (VGV isoform) bound to lorcaserin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-15
Authors: Gumpper, R.H., Fay, J.F., Roth, B.L.
PDB entry 8dpi: Cryo-EM structure of the 5HT2C receptor (VSV isoform) bound to lorcaserin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-15
Authors: Gumpper, R.H., Fay, J.F., Roth, B.L.
PDB entry 8dpj: The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023030
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-07-15
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 8dpk: structure of T. brucei RESC5
Classification: PROTEIN BINDING
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-07-15
Authors: Schumacher, M.A., Salinas, R., Cannistraci, E.
PDB entry 8dpl: Structure of EBOV GP lacking the mucin-like domain with 2.1.1D5 scFv and 6D6 scFv bound
Classification: VIRAL PROTEIN/Immune System
Source organism: Ebola virus - Mayinga, Zaire, 1976; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2022-07-15
Authors: Yu, X., Saphire, E.O.
PDB entry 8dpm: Structure of EBOV GP lacking the mucin-like domain with 9.20.1A2 Fab and 6D6 scFv bound
Classification: VIRAL PROTEIN/Immune System
Source organism: Ebola virus - Mayinga, Zaire, 1976; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-15
Authors: Yu, X., Saphire, E.O.
PDB entry 8dpn: CryoEM structure of Azotobacter vinelandii nitrogenase MoFeP during catalytic N2 reduction
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2022-07-15
Authors: Rutledge, H.L., Cook, B., Tezcan, F.A., Herzik, M.A.
PDB entry 8dpo: Crystal structure of Neisseria gonorrhoeae carbonic anhydrase with Acetazolamide
Classification: LYASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-07-15
Authors: Marapaka, A.K., Das, C., Flaherty, D.P., Yadav, R.
PDB entry 8dpq: Beta-lactamase CTX-M-14 N170A
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2022-07-15
Authors: Lu, S., Neetu, N., Palzkill, T.
PDB entry 8dpr: Crystal structure of SARS-CoV-2 main protease in complex with inhibitor TKB-248
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-16
Authors: Bulut, H., Hayashi, H., Tsuji, K., Kuwata, N., Das, D., Tamamura, H., Mitsuya, H.
PDB entry 8dps: The structure of the interleukin 11 signalling complex, truncated gp130
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2022-07-17
Authors: Metcalfe, R.D., Hanssen, E., Griffin, M.D.W.
PDB entry 8dpt: The structure of the IL-11 signalling complex, with full-length extracellular gp130
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-07-17
Authors: Metcalfe, R.D., Hanssen, E., Griffin, M.D.W.
PDB entry 8dpu: The crystal structure of the IL-11 signalling complex
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.78 Å
Deposited: 2022-07-17
Authors: Metcalfe, R.D., Aizel, K., Griffin, M.D.W.
PDB entry 8dpv: The crystal structure of Interleukin-11, W147A mutant
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2022-07-17
Authors: Metcalfe, R.D., Griffin, M.D.W.
PDB entry 8dpw: The structure of Interleukin-11 Mutein
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-17
Authors: Metcalfe, R.D., Griffin, M.D.W.
PDB entry 8dpx: Preligand association structure of DR5
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2022-07-17
Authors: Du, G., Zhao, L., Chou, J.J.
PDB entry 8dpy: Synthetic Beta Sheet Macrocycle Stabilized by Hydrogen Bond Surrogates
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2022-07-18
Authors: Lu, B., Vecchioni, S., Nazzaro, A., Arora, P.S.
PDB entry 8dpz: Local refinement of SARS-CoV-2 vaccine induced antibody DH1338 bound to SARS-CoV-2 HexaPro RBD Spike ectodomain
Classification: VIRAL PROTEIN/Immune System
Source organism: Macaca mulatta; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2022-07-18
Authors: Stalls, V., May, A.J., Acharya, P.
PDB entry 8dq0: Quorum-sensing receptor RhlR bound to PqsE
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2022-07-18
Authors: Paczkowski, J.E., Fromme, J.C., Feathers, J.R.
PDB entry 8dq1: Quorum-sensing receptor RhlR bound to PqsE
Classification: TRANSCRIPTION/DNA
Source organism: Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-07-18
Authors: Paczkowski, J.E., Fromme, J.C., Feathers, J.R.
PDB entry 8dq2: X-ray crystal structure of Hansschlegelia quercus lanmodulin (LanM) with lanthanum (III) bound at pH 7
Classification: METAL BINDING PROTEIN
Source organism: Hansschlegelia quercus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-18
Authors: Jung, J.J., Lin, C.-Y., Boal, A.K.
PDB entry 8dq3: X-ray crystal structure of Aggregatibacter actinomycetemcomitans dimanganese(II) class Id ribonucleotide reductase beta subunit
Classification: OXIDOREDUCTASE
Source organism: Aggregatibacter actinomycetemcomitans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2022-07-18
Authors: Rose, H.R., Jung, J.J., Boal, A.K.
PDB entry 8dq4: X-ray crystal structure of Flavobacterium johnsoniae dimanganese(II) class Id ribonucleotide reductase beta subunit K71R variant
Classification: OXIDOREDUCTASE
Source organism: Flavobacterium johnsoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-07-18
Authors: Rose, H.R., Maggiolo, A.O., Jung, J.J., Boal, A.K.
PDB entry 8dq5: X-ray crystal structure of Flavobacterium johnsoniae dimanganese(II) class Id ribonucleotide reductase T191I variant
Classification: OXIDOREDUCTASE
Source organism: Flavobacterium johnsoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-18
Authors: Rose, H.R., Boal, A.K.
PDB entry 8dq6: Structure of A. thaliana MIF/D-DT-like protein-1 (MDL1)
Classification: CYTOKINE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2022-07-18
Authors: Manjula, R., Basquin, J., Lolis, E.
PDB entry 8dq7: The structure of NicA2 variant F104L/A107T/S146I/G317D/H368R/L449V/N462S from Pseudomonas putida
Classification: FLAVOPROTEIN
Source organism: Pseudomonas putida S16
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-18
Authors: Wu, K., Dulchavsky, M., Li, J., Bardwell, J.C.A.
PDB entry 8dq8: The structure of NicA2 variant F104L/A107T/S146I/G317D/H368R/L449V/N462S in complex with N-methylmyosmine
Classification: FLAVOPROTEIN
Source organism: Pseudomonas putida S16
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-18
Authors: Wu, K., Dulchavsky, M., Li, J., Bardwell, J.C.A.
PDB entry 8dq9: Crystal structure of GDP bound 3-dehydroquinate dehydratase I from Klebsiella oxytoca
Classification: HYDROLASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dqa: Structure of A. thaliana MIF/D-DT-like protein-3 (MDL3)
Classification: CYTOKINE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-18
Authors: Manjula, R., Basquin, J., Lolis, E.
PDB entry 8dqb: Crystal structure of 3-dehydroquinate dehydratase I from Klebsiella oxytoca (I23 Form)
Classification: HYDROLASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dqc: Crystal structure of 3-dehydroquinate dehydratase I from Klebsiella oxytoca (I222 Form)
Classification: HYDROLASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-07-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dqd: Structure of the Campylobacter concisus glycosyltransferase PglA
Classification: MEMBRANE PROTEIN
Source organism: Campylobacter concisus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-07-18
Authors: Vuksanovic, N., Clasman, J.R., Bernstein, H.M., Imperiali, B., Allen, K.N.
PDB entry 8dqf: Crystal structure of Neisseria gonorrhoeae carbonic anhydrase with N-(5-sulfamoyl-1,3,4-thiadiazol-2-yl)cyclohexanecarboxamide
Classification: LYASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-19
Authors: Marapaka, A.K., Das, C., Flaherty, D.P., Yadav, R.
PDB entry 8dqg: Crystal structure of pyrrolysyl-tRNA synthetase from Methanomethylophilus alvus engineered for acridone amino acid (RS1) bound to AMPPNP and acridone
Classification: LIGASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2022-07-19
Authors: Gottfried-Lee, I., Karplus, P.A., Mehl, R.A., Cooley, R.B.
PDB entry 8dqh: Crystal structure of pyrrolysyl-tRNA synthetase from Methanomethylophilus alvus engineered for acridone amino acid (RS1) bound to ATP and acridone after 24 hours of crystal growth
Classification: LIGASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-07-19
Authors: Gottfried-Lee, I., Karplus, P.A., Mehl, R.A., Cooley, R.B.
PDB entry 8dqi: Crystal structure of pyrrolysyl-tRNA synthetase from Methanomethylophilus alvus engineered for acridone amino acid (RS1) bound to ATP and acridone after 2- weeks of crystal growth
Classification: LIGASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-07-19
Authors: Gottfried-Lee, I., Karplus, P.A., Mehl, R.A., Cooley, R.B.
PDB entry 8dqj: Crystal structure of pyrrolysyl-tRNA synthetase from Methanomethylophilus alvus engineered for acridone amino acid (AST) bound to ATP and acridone
Classification: LIGASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-07-19
Authors: Gottfried-Lee, I., Karplus, P.A., Mehl, R.A., Cooley, R.B.
PDB entry 8dqk: Intermediate resolution structure of barley (1,3;1,4)-beta-glucan synthase CslF6.
Classification: TRANSFERASE
Source organism: Hordeum vulgare
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-07-19
Authors: Ho, R., Purushotham, P., Zimmer, J.
PDB entry 8dql: CryoEM structure of IglD
Classification: PROTEIN TRANSPORT
Source organism: Francisella tularensis subsp. novicida
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-19
Authors: Liu, X., Clemens, D., Lee, B., Yang, X., Zhou, H., Horwitz, M.
PDB entry 8dqm: Crystal structure of isoaspartyl aminopeptidase from Roseivivax halodurans DSM 15395
Classification: HYDROLASE
Source organism: Roseivivax halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-07-19
Authors: Sharon, I., Schmeing, T.M.
PDB entry 8dqn: Crystal structure of isoaspartyl dipeptidase from Leucothrix mucor DSM2157
Classification: HYDROLASE
Source organism: Leucothrix mucor DSM 2157
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-19
Authors: Sharon, I., Schmeing, T.M.
PDB entry 8dqo: Crystal structure of Arabidopsis thaliana COSY
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-19
Authors: Kim, C.Y., Mitchell, A.J., Gutierrez, M., Weng, J.K.
PDB entry 8dqp: Crystal structure of Arabidopsis thaliana COSY in complex with scopoletin
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2022-07-19
Authors: Kim, C.Y., Mitchell, A.J., Gutierrez, M., Weng, J.K.
PDB entry 8dqq: Crystal structure of Arabidopsis thaliana COSY in complex with scopoletin
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2022-07-19
Authors: Kim, C.Y., Mitchell, A.J., Gutierrez, M., Weng, J.K.
PDB entry 8dqr: Crystal structure of Arabidopsis thaliana COSY in complex with scopoletin
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-07-19
Authors: Kim, C.Y., Mitchell, A.J., Gutierrez, M., Weng, J.K.
PDB entry 8dqs: The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023032
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-07-19
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 8dqt: Human PDK1 kinase domain in complex with Valsartan
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2022-07-19
Authors: Gross, L.Z.F., Klinke, S., Biondi, R.M.
PDB entry 8dqu: Nanobody bound SARS-CoV-2 Nsp9
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45003 Å
Deposited: 2022-07-20
Authors: Littler, D.R., Gully, B.S., Rossjohn, J.
PDB entry 8dqv: The 1.52 angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Classification: ELECTRON TRANSPORT
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.52 Å
Deposited: 2022-07-20
Authors: Grinter, R., Venugopal, H., Kropp, A., Greening, C.
PDB entry 8dqw: Open state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dqx: Open state of RFC:PCNA bound to a 3' ss/dsDNA junction
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dqy: Structure of Rv0455c from Mycobacterium tuberculosis
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-20
Authors: Kent, J.E., Aleshin, A.E., Marassi, F.M.
PDB entry 8dqz: Intermediate state of RFC:PCNA bound to a 3' ss/dsDNA junction
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dr0: Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dr1: Consensus closed state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2)
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dr2: Crystal structure of Neisseria gonorrhoeae carbonic anhydrase with 2-cyclohexyl-N-(5-sulfamoyl-1,3,4-thiadiazol-2-yl)acetamide
Classification: LYASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-07-20
Authors: Marapaka, A.K., Das, C., Flaherty, D.P., Yadav, R.
PDB entry 8dr3: Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) with NTD
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dr4: Open state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) without NTD
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dr5: Open state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) with NTD
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dr6: Closed state of RFC:PCNA bound to a nicked dsDNA
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dr7: Open state of RFC:PCNA bound to a nicked dsDNA
Classification: REPLICATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-07-20
Authors: Schrecker, M., Hite, R.K.
PDB entry 8dr8: LRRC8A:C conformation 2 (oblong) top mask
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-07-20
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8dr9: Crystal structure of human ALDH2 in complex with NAD+ and PEG MME 550
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-20
Authors: Xu, S.Y., Weng, J.K.
PDB entry 8dra: LRRC8A:C conformation 2 (oblong) LRR mask
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2022-07-20
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8drb: Crystal structure of Neisseria gonorrhoeae carbonic anhydrase with 3-phenyl-N-(5-sulfamoyl-1,3,4-thiadiazol-2-yl)propanamide
Classification: LYASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-07-20
Authors: Marapaka, A.K., Das, C., Flaherty, D.P., Yadav, R.
PDB entry 8drd: Ni(II)-bound B2 dimer (H60/H100/H104)
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-07-20
Authors: Choi, T.S., Tezcan, F.A.
PDB entry 8dre: LRRC8A:C conformation 2 (oblong)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-07-20
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8drf: Zn(II)-bound B2 dimer (H60/H100/H104)
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-20
Authors: Choi, T.S., Tezcan, F.A.
PDB entry 8drg: Structure of Rv0455c from Mycobacterium tuberculosis
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-20
Authors: Kent, J.E., Aleshin, A.E., Marassi, F.M.
PDB entry 8drh: HIGH RESOLUTION NMR STRUCTURE OF THE D(GCGTCAGG)R(CCUGACGC) HYBRID, MINIMIZED AVERAGE STRUCTURE
Classification: DNA-RNA HYBRID
Experimental method: SOLUTION NMR
Deposited: 1997-10-13
Authors: Bachelin, M., Hessler, G., Kurz, G., Hacia, J.G., Dervan, P.B., Kessler, H.
PDB entry 8dri: Structure of Rv0455c from Mycobacterium tuberculosis
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-20
Authors: Kent, J.E., Aleshin, A.E., Marassi, F.M.
PDB entry 8drj: Apo B2 dimer (H60/H100/H104) formed in the presence of Cu(II)
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-07-21
Authors: Choi, T.S., Tezcan, F.A.
PDB entry 8drk: LRRC8A:C conformation 1 (round) top focus
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-07-21
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8drl: Zn(II)-bound B2 dimer (H60/H100/H104) formed in Cu(II)//Zn(II) (M1 // M2) condition
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-07-21
Authors: Choi, T.S., Tezcan, F.A.
PDB entry 8drm: Zn(II)-bound B2 dimer (H60/H100/H104) formed in Zn(II)//Cu(II) (M1 // M2) condition
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-07-21
Authors: Choi, T.S., Tezcan, F.A.
PDB entry 8drn: LRRC8A:C conformation 1 (round) LRR focus 1
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2022-07-21
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8dro: LRRC8A:C conformation 1 (round) LRR focus 2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.06 Å
Deposited: 2022-07-21
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8drp: Focus/local refined map in C4 of signal subtracted RyR1 particles
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-07-21
Authors: Haji-Ghassemi, O., Van Petegm, F.
PDB entry 8drq: LRRC8A:C conformation 1 (round) LRR focus 3
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2022-07-21
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8drr: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp4-nsp5 (C4) cut site sequence
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8drs: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp6-nsp7 (C6) cut site sequence
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8drt: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp6-nsp7 (C6) cut site sequence (form 2)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8dru: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp7-nsp8 (C7) cut site sequence
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8drv: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp8-nsp9 (C8) cut site sequence
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8drw: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp9-nsp10 (C9) cut site sequence
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8drx: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp10-nsp11 (C10) cut site sequence (form 2)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8dry: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp12-nsp13 (C12) cut site sequence
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8drz: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp13-nsp14 (C13) cut site sequence
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8ds0: Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp14-nsp15 (C14) cut site sequence (form 2)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8ds1: Structure of SARS-CoV-2 Mpro in complex with nsp12-nsp13 (C12) cut site sequence
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8ds2: Structure of SARS-CoV-2 Mpro in complex with the nsp13-nsp14 (C13) cut site sequence (form 2)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-07-21
Authors: Lee, J., Kenward, C., Worrall, L.J., Vuckovic, M., Paetzel, M., Strynadka, N.C.J.
PDB entry 8ds3: LRRC8A:C conformation 1 (round)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2022-07-21
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8ds5: X-ray structure of the MK5890 Fab - CD27 antibody-antigen complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.926 Å
Deposited: 2022-07-21
Authors: Fischmann, T.O.
PDB entry 8ds6: Structure of the PEAK3 pseudokinase homodimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2022-07-21
Authors: Torosyan, H., Paul, M., Jura, N., Verba, K.A.
PDB entry 8ds7: Tumor-activated antibody derivatives targeting CTLA4
Classification: ANTITUMOR PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-07-21
Authors: Johnson, P., Williams, J.
PDB entry 8ds8: Crystal structure of human TNRC18 BAH domain in complex with H3K9me3 peptide
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-07-21
Authors: Song, J.K., Lu, J.W.
PDB entry 8ds9: LRRC8A:C in MSPE3D1 nanodisc top focus
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2022-07-21
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8dsa: LRRC8A:C in MSP1E3D1 nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-07-21
Authors: Kern, D.M., Brohawn, S.G.
PDB entry 8dsb: Lambda Bacteriophage Orf63
Classification: VIRAL PROTEIN
Source organism: Lambdavirus lambda
Experimental method: SOLUTION NMR
Deposited: 2022-07-22
Authors: Donaldson, L.W.
PDB entry 8dsc: Human NAMPT in complex with substrate NAM and small molecule activator NP-A1-R
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.321 Å
Deposited: 2022-07-22
Authors: Ratia, K., Xiong, R., Shen, Z., Thatcher, G.R.
PDB entry 8dsd: Human NAMPT in complex with substrate NAM and small molecule activator NP-A1-S
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.429 Å
Deposited: 2022-07-22
Authors: Ratia, K., Xiong, R., Shen, Z., Thatcher, G.R.
PDB entry 8dse: Human NAMPT in complex with substrate NAM and activator quercitrin
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.428 Å
Deposited: 2022-07-22
Authors: Ratia, K., Xiong, R., Shen, Z., Thatcher, G.R.
PDB entry 8dsf: Structure of cIAP1 with BCCov
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-22
Authors: Schiemer, J.S., Calabrese, M.F.
PDB entry 8dsg: P411-PFA carbene transferase
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2022-07-22
Authors: Maggiolo, A.O., Porter, N.J., Zhang, J., Arnold, F.H.
PDB entry 8dsh: Human NAMPT in complex with quercitrin and AMPcP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-22
Authors: Ratia, K., Xiong, R., Shen, Z., Thatcher, G.R.
PDB entry 8dsi: Human NAMPT in complex with substrate NAM
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2022-07-22
Authors: Ratia, K., Xiong, R., Shen, Z., Thatcher, G.R.
PDB entry 8dsj: Peptidylglycine alpha hydroxylating monooxygenase anaerobic
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-22
Authors: Arias, R.J., Blackburn, N.J.
PDB entry 8dsk: Structure of the N358Y variant of serine hydroxymethyltransferase 8 in complex with PLP, glycine, and formyl tetrahydrofolate
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-07-22
Authors: Korasick, D.A., Beamer, L.J.
PDB entry 8dsl: Peptidylglycine alpha hydroxylating monooxygenase, Q272E
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-07-22
Authors: Arias, R.J., Blackburn, N.J.
PDB entry 8dsm: Human NAMPT in complex with inhibitor ZN-4-3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2022-07-22
Authors: Ratia, K., Xiong, R., Shen, Z., Thatcher, G.R.
PDB entry 8dsn: Peptidylglycine alpha hydroxylating monoxygenase, Q272A
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-22
Authors: Arias, R.J., Blackburn, N.J.
PDB entry 8dso: Structure of cIAP1, BTK and BCCov
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.334 Å
Deposited: 2022-07-22
Authors: Schiemer, J.S., Calabrese, M.F.
PDB entry 8dsp: Cryo-EM structure of the proximal half fiber in del7.3K2R1 mature phage
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-22
Authors: Wang, C., Liu, J., Molineux, I.J.
PDB entry 8dsr: Structure of Plasmepsin X (PM10, PMX) from Plasmodium falciparum 3D7 in complex with UCB7362
Classification: HYDROLASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-07-22
Authors: Abendroth, J., Lorimer, D.D.