LiteFold/PDB huggingface dataset:
PDB entry 9oyn: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 6 with fully closed clamp
Classification: REPLICATION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyo: Structure of R15L D10-NT amyloid fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-06-04
Authors: Lv, G., Eliezer, D.
PDB entry 9oyq: Structure of D10-NT amyloid fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-04
Authors: Lv, G., Eliezer, D.
PDB entry 9oyr: Structure of D2-NT amyloid fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.03 Å
Deposited: 2025-06-04
Authors: Lv, G., Eliezer, D.
PDB entry 9oys: Structure of S59L D10-NT amyloid fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-06-04
Authors: Lv, G., Eliezer, D.
PDB entry 9oyt: Structure of T61I D2-NT amyloid fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-04
Authors: Lv, G., Eliezer, D.
PDB entry 9oyv: Flavobacterium johnsoniae 30S ribosomal subunit, ZAM64 mutant.
Classification: RIBOSOME
Source organism: Flavobacterium johnsoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-04
Authors: Ortega, J., Arpin, D.
PDB entry 9oyw: Structure of D10-NT amyloid fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2025-06-04
Authors: Lv, G., Eliezer, D.
PDB entry 9oyz: Cryo-EM structure of chicken ROS1 in apo-state. Cryo-EM refinement is focused on the ""head"" region of chicken ROS1.
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-04
Authors: Bai, X.C., Zhang, X.W.
PDB entry 9oz0: Crystal structure of T6SS effector-immunity complex PA3907-PA3908 from Pseudomonas aeruginosa
Classification: UNKNOWN FUNCTION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.871 Å
Deposited: 2025-06-04
Authors: Stogios, P.J., Borek, D., Skarina, T., Osipiuk, J., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9oz1: Cryo-EM structure of chicken ROS1 in apo-state. Cryo-EM refinement is focused on the ""leg"" region of chicken ROS1.
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-06-04
Authors: Bai, X.C., Zhang, X.W.
PDB entry 9oz5: Gradient equilibration of tetragonal lysozyme from 8% NaCl to 3% NaCl over 40 minutes
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-06-05
Authors: Juers, D.H.
PDB entry 9oz6: Cryo-EM structure of 1:1 chicken ROS1 and chicken NEL complex.
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-05
Authors: An, W.D., Zhang, X.W., Bai, X.C.
PDB entry 9oz8: Cryo-EM structure of chicken NEL dimer bound with one human NICOL.
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-06-05
Authors: An, W.D., Zhang, X.W., Bai, X.C.
PDB entry 9oz9: Flavobacterium johnsoniae 70S initiation complex with Shine-Dalgarno-less mRNA.
Classification: RIBOSOME
Source organism: Flavobacterium johnsoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-06-05
Authors: Ortega, J., Arpin, D.
PDB entry 9ozc: Cryo-EM structure of 1:2:1 ROS1/NEL/NICOL holo-complex, conformation 1.
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-06-05
Authors: An, W.D., Zhang, X.W., Bai, X.C.
PDB entry 9ozd: Crystal structure of the polysaccharide lyase RbmB from Vibrio cholerae bound to Vibrio Polysaccharide
Classification: LYASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-06-05
Authors: Weerasekera, R., Moreau, A., Huang, X., Potapova, A., Schwechheimer, C., Huynh, Y., Cannizzo, O., Gordon, R., Hinbest, A.J., Yang, Y., Jiang, X., Yan, J., Yildiz, F., Olson, R.
PDB entry 9oze: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IspC) from Acinetobacter baumannii in complex with a Fosmidomycin analog, NADPH, and a magnesium ion
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-05
Authors: Girma, M.B., Ball, H.S., Belcher Dufrisne, M., Lee, S.H., Soojhawon, I., Noble, S.M., Dowd, C.S., Couch, R.D.
PDB entry 9ozf: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IspC) from Acinetobacter baumannii in complex with a Fosmidomycin analog, NADPH, and a magnesium ion
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-05
Authors: Girma, M.B., Ball, H.S., Belcher Dufrisne, M., Lee, S.H., Soojhawon, I., Noble, S.M., Dowd, C.S., Couch, R.D.
PDB entry 9ozg: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IspC) from Acinetobacter baumannii in complex with a Fosmidomycin analog, NADPH, and a magnesium ion
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-05
Authors: Girma, M.B., Ball, H.S., Belcher Dufrisne, M., Lee, S.H., Soojhawon, I., Noble, S.M., Dowd, C.S., Couch, R.D.
PDB entry 9ozh: Cryo-EM structure of 1:2:1 ROS1/NEL/NICOL holo-complex, conformation 2.
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-06-05
Authors: An, W.D., Zhang, X.W., Bai, X.C.
PDB entry 9ozi: Cryo-EM structure of chicken ROS1 in apo-state. This is the complete map and model.
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-05
Authors: Bai, X.C., Zhang, X.W.
PDB entry 9ozl: Crystal structure of the polysaccharide lyase RbmB from Vibrio cholerae
Classification: LYASE
Source organism: Vibrio cholerae C6706
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-06-05
Authors: Weerasekera, R., Moreau, A., Huang, X., Potapova, A., Schwechheimer, C., Huynh, Y., Cannizzo, O., Gordon, R., Hinbest, A.J., Yang, Y., Jiang, X., Yan, J., Yildiz, F., Olson, R.
PDB entry 9ozn: Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 1.
Classification: RIBOSOME
Source organism: Flavobacterium johnsoniae; Flavobacterium johnsoniae UW101
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-05
Authors: Ortega, J., Arpin, D.
PDB entry 9ozo: Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 2.2 A resolution from a 2-day old crystal
Classification: LYASE
Source organism: Sicarius terrosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-06-05
Authors: Sundman, A.K., Montfort, W.R., Binford, G.J., Cordes, M.H.
PDB entry 9ozs: Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to substrate sphingolipids at 2.60 A resolution
Classification: LYASE
Source organism: Sicarius terrosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-06-05
Authors: Sundman, A.K., Montfort, W.R., Binford, G.J., Cordes, M.H.
PDB entry 9ozv: Structure of the self-association domain of LDB2
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-06-05
Authors: Vu, T.H., Patel, K., Smith, N.C., Matthews, J.M.
PDB entry 9ozw: Gradient equilibration of alpha-lactalbumin to a 25% glycerol solution over 40 minutes
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2025-06-05
Authors: Juers, D.H.
PDB entry 9ozy: Gradient equilibration of hexagonal thermolysin to low salt over 15 minutes
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-06-06
Authors: Juers, D.H.
PDB entry 9ozz: Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 2.
Classification: RIBOSOME
Source organism: Flavobacterium johnsoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-06-06
Authors: Ortega, J., Arpin, D.
PDB entry 9p00: Cryo-EM structure of apo S. Mansoni p97
Classification: CHAPERONE
Source organism: Schistosoma mansoni
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-06-06
Authors: Stephens, D.R., Han, Y., Chen, Z., Collins, J.J., Fung, H.Y.J.
PDB entry 9p01: Cryo-EM structure of S. Mansoni p97 bound to ATPgS
Classification: CHAPERONE
Source organism: Schistosoma mansoni
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-06-06
Authors: Stephens, D.R., Han, Y., Chen, Z., Collins, J.J., Fung, H.Y.J.
PDB entry 9p02: Cryo-EM structure of S. Mansoni p97 bound to compound 739
Classification: CHAPERONE
Source organism: Schistosoma mansoni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-06-06
Authors: Stephens, D.R., Han, Y., Chen, Z., Liang, J., Ready, J., Collins, J.J., Fung, H.Y.J.
PDB entry 9p07: Cryo-EM structure of S. Mansoni p97 bound to compound 804
Classification: CHAPERONE
Source organism: Schistosoma mansoni
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-06-06
Authors: Stephens, D.R., Han, Y., Chen, Z., Liang, J., Ready, J., Collins, J.J., Fung, H.Y.J.
PDB entry 9p0a: Structure of Natrinema sp. J7-2 Tafi pilus
Classification: PROTEIN FIBRIL
Source organism: Natrinema sp. J7-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-06-06
Authors: Sonani, R.R., Egelman, E.H.
PDB entry 9p0c: Crystal structure of Ca2+-bound RTX domain block V of adenylate cyclase toxin from Bordetella pertussis
Classification: TOXIN
Source organism: Bordetella pertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-06-06
Authors: Gudinas, A.P., Chang, M.P., Fernandez, D., Mai, D.J.
PDB entry 9p0d: Crystal structure of Sr2+-bound RTX domain block V of adenylate cyclase toxin from Bordetella pertussis
Classification: TOXIN
Source organism: Bordetella pertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.502 Å
Deposited: 2025-06-06
Authors: Gudinas, A.P., Fernandez, D., Mai, D.J.
PDB entry 9p0e: Flavobacterium johnsoniae ZAM64 mutant 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence.
Classification: RIBOSOME
Source organism: Flavobacterium johnsoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-06-06
Authors: Ortega, J., Arpin, D.
PDB entry 9p0f: Crystal Structure of the C-terminal Cytoplasmic Domain of nsp4 from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-06-06
Authors: Minasov, G., Shuvalova, L., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9p0k: Composite map of CXCL9-CXCR3-Gi-scFv16
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-06
Authors: Sun, D., Masureel, M., Johnson, M.
PDB entry 9p0l: Composite map of CXCL10-CXCR3-Gi-scFv16
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-06
Authors: Sun, D., Masureel, M., Johnson, M.
PDB entry 9p0m: Composite map of CXCL11-CXCR3-Gi-scFv16
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-06-07
Authors: Sun, D., Masureel, M., Johnson, M.
PDB entry 9p0n: MscS in Glyco-DIBMA Native Nanodiscs (C7 symmetry)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-06-07
Authors: Moller, E., Britt, M., Zhou, F., Yang, H., Anishkin, A., Ernst, R., Juan, V.M., Sukharev, S., Matthies, D.
PDB entry 9p0p: Crystal structure of 23S rRNA methyltransferase Cfr, apoenzyme
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-06-07
Authors: Stogios, P.J., Skarina, T., Kim, Y., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9p0q: Structure of PYCR1 complexed with the allosteric inhibitor 1-benzyl-1H-1,3-benzodiazole-2-sulfonic acid
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-06-07
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9p0r: Structure of PYCR1 complexed with the allosteric inhibitor 2-[(2,6-dichlorophenyl)amino]pyridine-3-sulfonic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2025-06-07
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9p0s: Structure of PYCR1 complexed with the allosteric inhibitor 4-hydroxy-7-(phenylamino)naphthalene-2-sulfonic acid
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-06-07
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9p0t: Structure of PYCR1 complexed with the allosteric inhibitor 4-hydroxy-7-(phenylamino)naphthalene-2-sulfonic acid in a remote site and NADH and (S)-(-)-2-Hydroxy-3,3-dimethylbutyric acid in the active site
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-06-07
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9p0u: Structure of PYCR1 complexed with the allosteric inhibitor 7-benzamido-4-hydroxynaphthalene-2-sulfonic acid
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-06-07
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9p0v: Structure of PYCR1 complexed with the allosteric inhibitor 7-benzamido-4-hydroxynaphthalene-2-sulfonic acid in a remote site and NADH and (S)-(-)-2-Hydroxy-3,3-dimethylbutyric acid in the active site
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-06-07
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9p0w: Human carbonic anhydrase II in complex with TDP4
Classification: LYASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-06-07
Authors: Gulkis, M.C., McKenna, R., Lomelino, C., Mahon, B.P., Sechi, M.
PDB entry 9p0x: Nanodisc-embedded human TF/FVIIa/XK1 in complex with 10H10 Fab (nanodisc-subtracted)
Classification: BLOOD CLOTTING
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-06-07
Authors: Photenhauer, A.L., Sedzro, J.C., Ohi, M.D., Morrissey, J.H.
PDB entry 9p11: Cas1-Cas2/3 integrase, heterohexameric assembly
Classification: RECOMBINATION
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-09
Authors: Henriques, W.S., Bowman, J., Hall, L.N., Gauvin, C.G., Wei, H., Kuang, H., Zimanyi, C.M., Eng, E.T., Santiago-Frangos, A., Wiedenheft, B.
PDB entry 9p12: Lysozyme Room-Temperature In-Situ, Shipped
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-06-09
Authors: Snell, M.E., Campomizzi, C.S., Mikolajek, H., Sandy, J., Sanchez-Weatherby, J., Budziszewski, G.R., Hough, M.A., Bowman, S.E.J.
PDB entry 9p13: Lysozyme Room-Temperature In-Situ, Grown On-Site
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-06-09
Authors: Snell, M.E., Campomizzi, C.S., Mikolajek, H., Sandy, J., Sanchez-Weatherby, J., Budziszewski, G.R., Hough, M.A., Bowman, S.E.J.
PDB entry 9p14: Thaumatin Room-Temperature In-Situ, Grown On-Site
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2025-06-09
Authors: Snell, M.E., Campomizzi, C.S., Mikolajek, H., Sandy, J., Sanchez-Weatherby, J., Budziszewski, G.R., Hough, M.A., Bowman, S.E.J.
PDB entry 9p15: Thaumatin Room-Temperature In-Situ, Shipped
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-06-09
Authors: Snell, M.E., Campomizzi, C.S., Mikolajek, H., Sandy, J., Sanchez-Weatherby, J., Budziszewski, G.R., Hough, M.A., Bowman, S.E.J.
PDB entry 9p16: Thermolysin Room-Temperature In-Situ, Grown On-Site
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-06-09
Authors: Campomizzi, C.S., Snell, M.E., Mikolajek, H., Sandy, J., Sanchez-Weatherby, J., Budziszewski, G.R., Hough, M.A., Bowman, S.E.J.
PDB entry 9p17: Thermolysin Room-Temperature In-Situ, Shipped
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-06-09
Authors: Campomizzi, C.S., Snell, M.E., Mikolajek, H., Sandy, J., Sanchez-Weatherby, J., Budziszewski, G.R., Hough, M.A., Bowman, S.E.J.
PDB entry 9p19: B. pseudomallei rubrerythrin room temperature structure
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-06-09
Authors: Saha, S., Budziszewski, G.R., Russi, S., Cohen, A., Bowman, S.E.J., Perry, S.
PDB entry 9p1a: B. pseudomallei rubrerythrin room temperature structure from LEAP-X device
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-06-09
Authors: Saha, S., Budziszewski, G.R., Russi, S., Cohen, A., Bowman, S.E.J., Perry, S.
PDB entry 9p1b: P. putida mandelate racemase co-crystallized with tavaborole
Classification: ISOMERASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-06-09
Authors: Jabin, A., Hayden, J.A., Bearne, S.L., St Maurice, M.
PDB entry 9p1c: Crystal structure of human TMPRSS11A S368A interacting with its own zymogen activation motif
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2025-06-09
Authors: Fraser, B.J., Dong, A., Hastings, K., Wilson, R.P., Seitova, A., Li, Y., Arrowsmith, C.H.
PDB entry 9p1d: Cas1-Cas2/3 integrase bound to foreign dsDNA fragment
Classification: RECOMBINATION
Source organism: Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-06-09
Authors: Henriques, W.S., Bowman, J., Hall, L.N., Gauvin, C.G., Wei, H., Kuang, H., Zimanyi, C.M., Eng, E.T., Santiago-Frangos, A., Wiedenheft, B.
PDB entry 9p1e: Myoglobin variant RR22
Classification: OXYGEN STORAGE
Source organism: Physeter macrocephalus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-06-09
Authors: Dayananda, T., Jenkins, J.L., Fasan, R.
PDB entry 9p1f: Myoglobin variant RR22 in complex with imidazole
Classification: OXYGEN STORAGE
Source organism: Physeter macrocephalus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2025-06-09
Authors: Dayananda, T., Jenkins, J.L., Fasan, R.
PDB entry 9p1h: 100K human S-adenosylmethionine decarboxylase
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-06-10
Authors: Patel, J.R., Bonzon, T.J., Bahkt, T., Fagbohun, O.O., Clinger, J.A.
PDB entry 9p1i: Atomic structure of vibrio effector fragment VopV bound to Beta-cytoplasmic/gamma1-cytoplasmic F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Vibrio parahaemolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-10
Authors: Kreutzberger, M.A., Kudryashova, E., Egelman, E.H., Kudryashov, D.S.
PDB entry 9p1m: Cryo-EM structure of CD73 in complex with antibody Sym024
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-10
Authors: Bansia, H., Armbruster, E., Des Georges, A.
PDB entry 9p1s: A2AR-BRIL in complex with ZM241385 and PGD2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-06-10
Authors: Rao, P., Rathinaswamy, M., Chan, M., Paredes, A.G., Patel, C., Wranik, B.J., Powell, J., Eaton, D., Hicks, K.J., Mafi, A., Hao, Q.
PDB entry 9p1t: A2AR-BRIL in complex with ZM241385
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-06-10
Authors: Rao, P., Rathinaswamy, M., Chan, M., Paredes, A.G., Patel, C., Wranik, B.J., Powell, J., Eaton, D., Hicks, K.J., Mafi, A., Hao, Q.
PDB entry 9p1u: beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-06-10
Authors: Thomson, B.D., Marquez, M.D., Kahne, D.
PDB entry 9p24: Structure of human cardiac sodium channel Nav1.5 in intermediate open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2025-06-11
Authors: Biswas, R., Chinthalapudi, K.
PDB entry 9p25: Crystal structure of GH158(Pro) at 0.89 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 0.89 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p26: Crystal structure of GH158(Pro) at 1.40 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Madelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p27: Crystal structure of GH158(Pro) at 1.33 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Santos, C.A., Santos, C.R., Morais, M.A.B., Murakami, M.T.
PDB entry 9p28: Crystal structure of GH158(Pro) soaked with laminaritriose at 1.30 angstrom resolution.
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-06-11
Authors: Martins, M.P., Spadeto, J.P.M., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p29: Crystal structure of GH158(Pro) soaked with laminaripentaose at 1.48 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2a: Crystal structure of GH158(Pro) soaked with laminaripentaose at 1.45 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-06-11
Authors: Martins, M.P., Spadeto, J.P.M., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2b: Crystal structure of GH158(Pro) soaked with laminarihexaose at 1.62 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2c: Crystal structure of GH158(Pro) soaked with laminarihexaose at 1.31 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Santos, C.A., Santos, C.R., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2d: Crystal structure of GH158(Pro) at 1.30 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Santos, C.A., Santos, C.R., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2e: Crystal structure of GH158(Pro) soaked with mixed linkage (G3G4G) oligosaccharide at 1.70 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2f: Crystal structure of GH158(Pro) soaked with mixed linkage (G4G3G) oligosaccharide at 1.15 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-06-11
Authors: Martins, M.P., Spadeto, J.P.M., Araujo, E.A., Mandelli, F., Domingues, M.N., Santos, C.A., Santos, C.R., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2g: Crystal structure of GH158(Pro) soaked with mixed linkage (G4G4G3G) oligosaccharide at 1.10 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Santos, C.A., Santos, C.R., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2h: Crystal structure of GH158(Pro) soaked with mixed linkage (G4G4G3G) oligosaccharide at 1.30 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2i: Crystal structure of GH158(Pro) soaked with mixed linkage (G4G3G4G) oligosaccharide at 1.25 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Santos, C.A., Santos, C.R., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2j: Crystal structure of GH158(Pro) soaked with mixed linkage (G4G3G4G) oligosaccharide at 1.40 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2k: Crystal structure of GH158(Pro) soaked with mixed linkage (G4G3G4G) oligosaccharide at 1.30 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2l: Crystal structure of GH158(Pro) at 1.10 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Santos, C.A., Santos, C.R., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2m: Crystal structure of GH158(Pro) at 1.42 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-06-11
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Morais, M.A.B., Murakami, M.T.
PDB entry 9p2q: Solution NMR Structure of the Novel CH Zinc Finger from Makorin-3
Classification: METAL BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-06-12
Authors: Rua, A.J., Alexandrescu, A.T.
PDB entry 9p2r: Extended, CYR715-bound state of Manduca sexta soluble guanylate cyclase mutant beta C122S
Classification: SIGNALING PROTEIN
Source organism: Manduca sexta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-06-12
Authors: Thomas, W.C., Houghton, K.A.
PDB entry 9p38: YsxC-GMPPNP treated 44.5SYsxC particles. Class 1.
Classification: RIBOSOME
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-06-13
Authors: Ortega, J., Seffouh, A.
PDB entry 9p3d: cryo-EM structure of Vibrio effector VopV fragment bound to skeletal alpha F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Oryctolagus cuniculus; Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-13
Authors: Kreutzberger, M.A., Kudryashova, E., Egelman, E.H., Kudryashov, D.S.
PDB entry 9p3f: Structure of M. thermoresistible Rv3035 in complex with M. tuberculosis FecB
Classification: PROTEIN BINDING
Source organism: Mycobacterium tuberculosis; Mycolicibacterium thermoresistibile
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2025-06-13
Authors: Cuthbert, B.J., Harding, C.D., Mendoza, J., Goulding, C.W.
PDB entry 9p3g: Structure of M. thermoresistible Rv3035
Classification: PROTEIN BINDING
Source organism: Mycolicibacterium thermoresistibile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-06-13
Authors: Cuthbert, B.J., Harding, C.D., Mendoza, J., Goulding, C.W.
PDB entry 9p3i: High-resolution in situ ANDV single tetramer structure
Classification: VIRAL PROTEIN
Source organism: Orthohantavirus andesense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2025-06-13
Authors: Luqiang, G., McLellan, J.S.
PDB entry 9p3l: Structure of ANDV dimer of tetramer at conformation III
Classification: VIRAL PROTEIN
Source organism: Orthohantavirus andesense
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-06-14
Authors: Luqiang, G., McLellan, J.S.
PDB entry 9p3m: Structure of the ANDV dimer of tetramer at conformation II
Classification: VIRAL PROTEIN
Source organism: Orthohantavirus andesense
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2025-06-14
Authors: Luqiang, G., McLellan, J.S.
PDB entry 9p3n: The open state of zebrafish TRPM5 with 1mM EDTA and 0.5mM CBTA
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3o: Zebrafish TRPM5 with 5mM calcium and 0.5mM CBTA
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3p: Zebrafish TRPM5 with 5mM EGTA and 0.5mM CBTA
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3q: Zebrafish TRPM5 D797A mutant with 5mM calcium
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3r: Zebrafish TRPM5 D797A mutant with 5mM calcium and 0.5mM CBTA
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3s: Zebrafish TRPM5 D797N mutant with 5mM calcium and 0.5mM CBTA
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3t: Zebrafish TRPM5 with 5mM calcium and 0.5mM TPPO
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3u: Zebrafish TRPM5 E337A mutant with 5mM calcium and 0.5mM CBTA
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3v: Zebrafish TRPM5 Q771A mutant with 5mM calcium and 0.5mM CBTA
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3w: Zebrafish TRPM5 Q771A mutant with 5mM calcium
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-06-14
Authors: Ruan, Z., Du, J., Lu, W.
PDB entry 9p3x: Structure of the ANDV dimer of tetramer at conformation I
Classification: VIRAL PROTEIN
Source organism: Orthohantavirus andesense
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-06-14
Authors: Luqiang, G., McLellan, J.S.
PDB entry 9p3y: Andes virus glycoprotein tetramer in complex with ADI-65534 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Orthohantavirus andesense
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-06-14
Authors: McFadden, E., Guo, L., McLellan, J.S.
PDB entry 9p3z: Solution structure of the novel zinc finger from ZC4H2
Classification: METAL BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-06-14
Authors: Alexandrescu, A.T., Rua, A.J.
PDB entry 9p44: Crystal structure of KRAS-G12D (GDP-bound) in complex with BBO-11818
Classification: ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-06-16
Authors: Chan, A.H., Bratcher, D.R., Simanshu, D.K.
PDB entry 9p45: Crystal structure of KRAS-G12D (GMPPNP-bound) in complex with BBO-11818
Classification: ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-06-16
Authors: Chan, A.H., Bratcher, D.R., Simanshu, D.K.
PDB entry 9p46: Crystal structure of HRAS-G12D/Q95H (GMPPNP-bound) in complex with BBO-11818
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-06-16
Authors: Chan, A.H., Bratcher, D.R., Simanshu, D.K.
PDB entry 9p4a: E. coli Dihydropteroate Synthase in complex with pterin-based inhibitor
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-06-16
Authors: Snoke, H.E., Reeve, S.M., Lee, R.E.
PDB entry 9p4c: Crystal structure of Mesothelin C-terminal peptide-RO4 Fab complex
Classification: ANTITUMOR PROTEIN
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2025-06-16
Authors: Zhan, J., Maslanka, C., Xia, D.
PDB entry 9p4d: Crystal Structure of Engineered glutamine binding protein and a Gd-DOTA ligand - Gln bound
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2025-06-16
Authors: Bruchs, A.T., Wilson, C.A., Boggs, D.G., Fatima, S., Bridwell-Rabb, J., Olshansky, L.
PDB entry 9p4e: Crystal Structure of Engineered glutamine binding protein and a Gd-DOTA ligand - no GLN bound
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-06-16
Authors: Bruchs, A.T., Wilson, C.A., Boggs, D.G., Fatima, S., Bridwell-Rabb, J., Olshansky, L.
PDB entry 9p4i: YsxC-GTP treated 44.5SYsxC particles. Class 5.
Classification: RIBOSOME
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-06-16
Authors: Ortega, J., Seffouh, A.
PDB entry 9p4j: The structure of Retron Eco8 in Apo state
Classification: Transferase/Hydrolase/DNA/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-06-16
Authors: Yu, C., Wang, C., Fu, T.
PDB entry 9p4k: The structure of Retron Eco8-SSB complex
Classification: Transferase/Hydrolase/DNA/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-06-17
Authors: Yu, C., Wang, C., Fu, T.
PDB entry 9p4l: Cryo-EM structure of AAV.CAP-B10
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.22 Å
Deposited: 2025-06-17
Authors: Brittain, T.J., Jang, S.
PDB entry 9p4m: Cryo-EM structure of AAV9-B10
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-06-17
Authors: Brittain, T.J., Jang, S.
PDB entry 9p4n: Cryo-EM structure of AAV9-X1.1 complexed to AAVR-PKD2
Classification: VIRUS
Source organism: Adeno-associated virus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Deposited: 2025-06-17
Authors: Brittain, T.J., Jang, S.
PDB entry 9p4o: Cryo-EM structure of PHP.eB.24
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.05 Å
Deposited: 2025-06-17
Authors: Brittain, T.J., Jang, S.
PDB entry 9p4p: Cryo-EM structure of AAV9-X1
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-06-17
Authors: Brittain, T.J., Jang, S.
PDB entry 9p4q: Cryo-EM structure of AAV.CAP-B10 complexed to AAVR-PKD2
Classification: VIRUS
Source organism: Adeno-associated virus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-06-17
Authors: Brittain, T.J., Jang, S.
PDB entry 9p4r: Cryo-EM structure of AAV9-X1.1
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2025-06-17
Authors: Brittain, T.J., Jang, S.
PDB entry 9p4s: HmuS heme dechelatase: disordered domain 1, heme free.
Classification: METAL TRANSPORT
Source organism: Bacteroides thetaiotaomicron
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-06-17
Authors: Gauvin, C.C., Nath, A.K., Rodrigues da Silva, R., Akpoto, E., Dubois, J.L., Lawrence, C.M.
PDB entry 9p4v: Atomic model of wild type S. cerevisiae Fatty Acid Synthase (FAS) in complex with Palmitoyl-CoA (in vitro binding)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2025-06-17
Authors: Hasan, N.S.M., Keszei, F.A.A., Mazhab-Jafari, M.T.
PDB entry 9p4w: Atomic model of wild type S. cerevisiae Fatty Acid Synthase (FAS)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2025-06-17
Authors: Hasan, N.S.M., Keszei, F.A.A., Mazhab-Jafari, M.T.
PDB entry 9p4x: Human EAAT3 with compound 3e and cholesterol bound at inward facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-06-17
Authors: Qiu, B., Boudker, O.
PDB entry 9p4y: Human EAAT3 with compound 3e and digitonin.glyco-diosgenin bound at inward facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2025-06-17
Authors: Qiu, B., Boudker, O.
PDB entry 9p4z: Human EAAT3 with sodium bound at inward facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-06-17
Authors: Qiu, B., Boudker, O.
PDB entry 9p53: ClpP1P2 complex from M. tuberculosis bound to Calprotamide A
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-06-17
Authors: Brady, S.F., Kan, J.
PDB entry 9p54: Apo form of ClpP1P2 complex from M. tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-06-17
Authors: Brady, S.F., Kan, J.
PDB entry 9p55: Structure of DNA-free long form XPD from Thermoplasma acidophilum
Classification: HYDROLASE
Source organism: Thermoplasma acidophilum DSM 1728
Experimental method: X-RAY DIFFRACTION
Resolution: 2.127 Å
Deposited: 2025-06-17
Authors: Bravo, M., Fan, L.
PDB entry 9p5i: E. coli Dihydropteroate Synthase in complex with pterin-based inhibitor
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.141 Å
Deposited: 2025-06-18
Authors: Snoke, H.E., Reeve, S.M., Lee, R.E.
PDB entry 9p6a: The catalytic domain of MEKK2 in complex with ponatinib
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-06-18
Authors: Vish, K.J., Boggon, T.J.
PDB entry 9p6b: Cryo-EM structure of full-length human TRPV1 in the presence of alpha-humulene
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-06-18
Authors: Talyzina, I.A., Sobolevsky, A.I.
PDB entry 9p6c: RTX domain block V of adenylate cyclase toxin with mutations D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N
Classification: TOXIN
Source organism: Bordetella pertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-06-18
Authors: Chang, M.P., Mai, D.J., Gudinas, A.P., Fernandez, D.
PDB entry 9p6e: N49P7-FR Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-18
Authors: Phulera, S., Ozorowski, G., Ward, A.B.
PDB entry 9p6f: Structure of the SARS-CoV-2 main protease in complex with inhibitor SR-B-78
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-06-18
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 9p6g: eN49P7-FRv1-23 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-19
Authors: Phulera, S., Ozorowski, G., Ward, A.B.
PDB entry 9p6h: Structure of P. gingivalis PorK and PorN complexes from cryo electron microscopy
Classification: TRANSPORT PROTEIN
Source organism: Porphyromonas gingivalis W83
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-06-19
Authors: Hanssen, E., Morton, C., Gorasia, D.G., Veith, P.D., Reynolds, E.C.
PDB entry 9p6i: Crystal Structure of the Histidine Kinase VC2136 from Vibrio cholerae serotype O1
Classification: TRANSFERASE
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-06-19
Authors: Minasov, G., Shuvalova, L., Brunzelle, J.S., Wawrzak, Z., Kiryukhina, O., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9p6k: Colorado Potato Beetle Glutathione S-transferase Sigma Class member 2
Classification: TRANSFERASE
Source organism: Leptinotarsa decemlineata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2025-06-19
Authors: Moural, T.W., Zhu, F.
PDB entry 9p6p: Crystal Structure of the SARS-CoV-2 2'-O-Methyltransferase with (m7GpppA)pUpU (Cap-0) and S-Adenosyl-L-homocysteine (SAH).
Classification: TRANSFERASE, Viral Protein
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-06-19
Authors: Minasov, G., Shuvalova, L., Maltseva, N., Kim, Y., Kiryukhina, O., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9p6q: Mouse Ketohexokinase-A without ligand
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-06-19
Authors: Bae, S., Allen, K.N., Tolan, D.R.
PDB entry 9p6r: Structure of lysozyme-N,N',N""-triacetylchitotriose complex determined using REyes for automated MicroED
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.2 Å
Deposited: 2025-06-19
Authors: Eremin, D., Vlahakis, N.W., Rodriguez, J.A., Nelson, H.M.
PDB entry 9p6s: Cryo-EM structure of human integrin alpha5beta1 in complex with fibronectin (FN 7-10)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-06-19
Authors: Ding, J., Fantini, D., Dedden, D., Schumacher, S., Biertumpfel, C., Mizuno, N.
PDB entry 9p6w: Honey Truffle Active Component
Classification: UNKNOWN FUNCTION
Source organism: Mattirolomyces terfezioides
Experimental method: SOLUTION NMR
Deposited: 2025-06-20
Authors: McFarland, C.T., Connors, D.E.
PDB entry 9p6x: Structure of EBOV glycoprotein in complex with Nanosota-EB1 and EB2
Classification: VIRAL PROTEIN
Source organism: Ebola virus; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-06-20
Authors: Bu, F., Ye, G., Li, F.
PDB entry 9p6z: In situ human P-Z state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-06-20
Authors: Zheng, W., Xiong, Y.
PDB entry 9p72: In situ human P-E state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p73: In situ human eEF2-A/P-P/E state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, Z.
PDB entry 9p76: In situ human eEF1A-A/T-P state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p78: In situ human Hibernating rotate 3 with E-site tRNA state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p79: In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.