LiteFold/PDB huggingface dataset:
PDB entry 8ucx: Dihydrofolate Reductase Complexed with Folate
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-09-27
Authors: Fried, S.D.E., Boxer, S.G.
PDB entry 8ucy: Sterile Alpha Motif (SAM) domain from Tric1, Arabidopsis thaliana
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-09-27
Authors: Olasz, B., Vrielink, A., Evans, G.L.
PDB entry 8ucz: Sterile Alpha Motif (SAM) domain from Tric1 from Arabidopsis thaliana - D235A mutant
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-09-27
Authors: Olasz, B., Vrielink, A., Smithers, L.
PDB entry 8ud0: Sterile Alpha Motif (SAM) domain from Tric1 from Arabidopsis thaliana - G241E mutant
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-09-27
Authors: Olasz, B., Vrielink, A., Smithers, L.
PDB entry 8ud1: High resolution in-situ structure of complex I in respiratory supercomplex (composite)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-09-27
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8ud2: SARS-CoV-2 Nsp15, apo-form
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2023-09-28
Authors: Ito, F., Yang, H., Zhou, Z.H., Chen, X.S.
PDB entry 8ud3: SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, consensus form
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2023-09-28
Authors: Ito, F., Yang, H., Zhou, Z.H., Chen, X.S.
PDB entry 8ud4: SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 1
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-09-28
Authors: Ito, F., Yang, H., Zhou, Z.H., Chen, X.S.
PDB entry 8ud5: SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 2
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-09-28
Authors: Ito, F., Yang, H., Zhou, Z.H., Chen, X.S.
PDB entry 8ud6: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Classification: Ribosome/RNA
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-09-28
Authors: Aleksandrova, E.V., Syroegin, E.A., Wu, K.J.Y., Tresco, B.I.C., Ramkissoon, A., See, D.N.Y., Liow, P., Dittemore, G.A., Yu, M., Testolin, G., Mitcheltree, M.J., Liu, R.Y., Svetlov, M.S., Myers, A.G., Polikanov, Y.S.
PDB entry 8ud7: Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Classification: Ribosome/RNA
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-09-28
Authors: Aleksandrova, E.V., Syroegin, E.A., Wu, K.J.Y., Tresco, B.I.C., Ramkissoon, A., See, D.N.Y., Liow, P., Dittemore, G.A., Yu, M., Testolin, G., Mitcheltree, M.J., Liu, R.Y., Svetlov, M.S., Myers, A.G., Polikanov, Y.S.
PDB entry 8ud8: Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Classification: Ribosome/RNA
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-09-28
Authors: Aleksandrova, E.V., Syroegin, E.A., Wu, K.J.Y., Tresco, B.I.C., Ramkissoon, A., See, D.N.Y., Liow, P., Dittemore, G.A., Yu, M., Testolin, G., Mitcheltree, M.J., Liu, R.Y., Svetlov, M.S., Myers, A.G., Polikanov, Y.S.
PDB entry 8ud9: Structure of human constitutive 20S proteasome complexed with the inhibitor TDI-8304
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2023-09-28
Authors: Hsu, H.-C., Li, H.
PDB entry 8uda: Crystal Structure of Mu class Glutathione-S-Transferase, TuGSTm12(Tetur05g05300) from Tetranychus urticae
Classification: TRANSFERASE/SUBSTRATE
Source organism: Tetranychus urticae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-09-28
Authors: Khatri, K., Arriaza, R.H., Chruszcz, M.
PDB entry 8udb: Crystal Structure of Mu class GST from TuGSTm12 (Tetur05g05300) from Tetranychus urticae
Classification: TRANSFERASE/SUBSTRATE
Source organism: Tetranychus urticae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-09-28
Authors: Khatri, K., Arriaza, R., Chruszcz, M.
PDB entry 8udc: Crystal structure of TcPINK1 in complex with CYC116
Classification: CELL CYCLE
Source organism: Tribolium castaneum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-09-28
Authors: Veyron, S., Rasool, S., Trempe, J.F.
PDB entry 8udd: Crystal Structure of Mu class Glutathione-S-Transferase, TuGSTm12(Tetur05g05300) from Tetranychus urticae
Classification: TRANSFERASE/SUBSTRATE
Source organism: Tetranychus urticae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-09-28
Authors: Khatri, K., Arriaza, R.H., Chruszcz, M.
PDB entry 8ude: Crystal Structure of Mu class Glutathione-S-Transferase, TuGSTm06(Tetur05g05220) from Tetranychus urticae
Classification: TRANSFERASE/SUBSTRATE
Source organism: Tetranychus urticae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-09-28
Authors: Khatri, K., Arriaza, R.H., Chruszcz, M.
PDB entry 8udf: Crystal structure of SARS-CoV-2 3CL protease with inhibitor DEL_7
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-09-28
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udg: S1V2-72 Fab bound to EHA2 from influenza B/Malaysia/2506/2004
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza B virus (B/Malaysia/2506/2004)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.98 Å
Deposited: 2023-09-28
Authors: Finney, J., Kong, S., Walsh Jr, R.M., Harrison, S.C., Kelsoe, G.
PDB entry 8udh: Crystal Structure of Mu class Glutathione-S-Transferase TuGSTm06(Tetur05g05220) in complex with reaction product
Classification: TRANSFERASE/PRODUCT
Source organism: Tetranychus urticae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-09-28
Authors: Khatri, K., Arriaza, R.H., Chruszcz, M.
PDB entry 8udi: Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a crystallographic artifact
Classification: ISOMERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-28
Authors: Propp, J., Spies, M.A.
PDB entry 8udj: Crystal structure of SARS-CoV-2 3CL protease with inhibitor DEL_2
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-28
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udk: Human Mitochondrial DNA Polymerase gamma R853A Ternary Complex
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.43 Å
Deposited: 2023-09-28
Authors: Park, J., Herrmann, G.K., Yin, Y.W.
PDB entry 8udl: Human Mitochondrial DNA Polymerase Gamma Binary Complex
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2023-09-28
Authors: Park, J., Yin, Y.W.
PDB entry 8udm: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 16
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-09-28
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udn: A Stable Heterotrimeric Foldon with Minimum Mutation
Classification: VIRAL PROTEIN
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2023-09-28
Authors: Bingman, C.A., Liu, X., Roberts, D.S., Gellman, S.H.
PDB entry 8udo: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 15
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-09-28
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udp: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 14
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-09-28
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udq: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 1
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-09-28
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udr: Structure of the P1B7 antibody bound to the Sotorasib-modified KRas G12C peptide presented by the A*03:01 MHC I complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-28
Authors: Chan, L.M., Roweder, P.J., Craik, C.S., Verba, K.A.
PDB entry 8uds: The Crystal Structure of CoxG from M. smegmatis, minus lipid anchoring C-terminus.
Classification: ELECTRON TRANSPORT
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-29
Authors: Kropp, A., Greening, C., Grinter, R.
PDB entry 8udt: The X-RAY co-crystal structure of human FGFR3 and KIN-3248
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.829 Å
Deposited: 2023-09-29
Authors: Tyhonas, J.S., Arnold, L.D., Cox, J., Franovic, A., Gardiner, E., Grandinetti, K., Kania, R., Kanouni, T., Lardy, M., Li, C., Martin, E.S., Miller, N., Mohan, A., Murphy, E.A., Perez, M., Soroceanu, L., Timple, N., Uryu, S., Womble, S., Kaldor, S.W.
PDB entry 8udu: The X-RAY co-crystal structure of human FGFR3 and Compound 17
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.737 Å
Deposited: 2023-09-29
Authors: Tyhonas, J.S., Arnold, L.D., Cox, J., Franovic, A., Gardiner, E., Grandinetti, K., Kania, R., Kanouni, T., Lardy, M., Li, C., Martin, E.S., Miller, N., Mohan, A., Murphy, E.A., Perez, M., Soroceanu, L., Timple, N., Uryu, S., Womble, S., Kaldor, S.W.
PDB entry 8udv: The X-RAY co-crystal structure of human FGFR3 V555M and Compound 17
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.348 Å
Deposited: 2023-09-29
Authors: Tyhonas, J.S., Arnold, L.D., Cox, J., Franovic, A., Gardiner, E., Grandinetti, K., Kania, R., Kanouni, T., Lardy, M., Li, C., Martin, E.S., Miller, N., Mohan, A., Murphy, E.A., Perez, M., Soroceanu, L., Timple, N., Uryu, S., Womble, S., Kaldor, S.W.
PDB entry 8udw: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 2
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-29
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udx: Crystal structure of SARS-CoV-2 3CL protease with C145 sulfinic acid in complex with inhibitor 17
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-09-29
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udy: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 25
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-09-29
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8udz: The Structure of LTBP-49247 Fab Bound to TGFbeta1 Small Latent Complex
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-09-29
Authors: Streich Jr., F.C., Nicholls, S.B., Boston, C.J., Ramachandran, S.
PDB entry 8ue0: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 47
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-09-29
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Choi, K., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8ue1: Crystal Structure of Human Fructosamine-3-kinase (FN3K)
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-09-29
Authors: Lokhandwala, J., Tran, T.H., Binning, J.M.
PDB entry 8ue2: Structure of TREK-1CG*:ML335
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-09-29
Authors: Mondal, A., Lee, H., Minor, D.L.
PDB entry 8ue9: Structure of TREK-1CG*:CAT335
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-09-29
Authors: Mondal, A., Lee, H., Minor, D.L.
PDB entry 8uea: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 29
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-09-30
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Choi, K., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8ueb: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 30
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-09-30
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Choi, K., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8uec: Structure of TREK-1CG*:CAT335a
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-09-30
Authors: Mondal, A., Lee, H., Minor, D.L.
PDB entry 8uee: Atomic structure of Salmonella SipA/F-actin complex by cryo-EM
Classification: CELL INVASION
Source organism: Oryctolagus cuniculus; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-01
Authors: Niedzialkowska, E., Runyan, L., Kudryashova, E., Kudryashov, D.S., Egelman, E.H.
PDB entry 8uef: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 32
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-10-01
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Choi, K., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8ueg: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 27
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-10-01
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Choi, K., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8ueh: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 31
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-10-01
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Choi, K., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8uei: Crystal structure of SARS-CoV-2 3CL protease with inhibitor 28
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-10-01
Authors: Forouhar, F., Liu, H., Zack, A., Iketani, S., Williams, A., Vaz, D.R., Habashi, D.L., Choi, K., Resnick, S.J., Chavez, A., Ho, D.D., Stockwell, B.R.
PDB entry 8uej: ssRNA phage PhiCb5 virion
Classification: VIRUS
Source organism: Caulobacter phage phiCb5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-01
Authors: Wang, Y., Zhang, J.
PDB entry 8uek: Solution structure of ACKR3-targeting nanobody VUN701
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: SOLUTION NMR
Deposited: 2023-10-01
Authors: Schlimgen, R.R., Peterson, F.C., Volkman, B.F.
PDB entry 8uel: Crystal structure of enolase from Litopenaeus vannamei
Classification: LYASE
Source organism: Penaeus vannamei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-10-01
Authors: Chang, X., Zhao, G.
PDB entry 8uem: The CryoEM structure of the high affinity Carbon monoxide dehydrogenase from Mycobacterium smegmatis
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.85 Å
Deposited: 2023-10-02
Authors: Grinter, R., Venugopal, H., Greening, C., Gillett, D.
PDB entry 8uen: Crystal structure of Corynebacterium ulcerans endo-beta-N-acetylglucosaminidase catalytically inactive CU43 D187A-E189A at 2.3 A (P 21 21 2)
Classification: HYDROLASE
Source organism: Corynebacterium ulcerans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-02
Authors: Sastre, D.E., Sultana, N., Sundberg, E.J.
PDB entry 8ueo: In-situ complex I (Active-Apo)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uep: In-situ complex I, Active-Q10 (State-alpha)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8ueq: In-situ complex I with Q10 (State-beta)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uer: In-situ complex I with Q10 (State-gamma)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8ues: In-situ complex I, Deactive class01
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uet: In-situ complex I, Deactive class02
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8ueu: In-situ complex I, Deactive class03
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uev: In-situ complex I, Deactive class04
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uew: In-situ complex I, Deactive class05
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uex: In-situ complex I, Deactive class06
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uey: In-situ complex I, Deactive class07
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uez: In-situ complex I, Active-Q10 (State-delta)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-02
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8uf0: T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.02 Å
Deposited: 2023-10-03
Authors: Castells-Graells, R., Meador, K., Sawaya, M.R., Yeates, T.O.
PDB entry 8uf2: Apo SOS2 crystal structure in P1 space group
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-03
Authors: Gunn, R.J., Lawson, J.D.
PDB entry 8uf3: Structure of cytochrome c4 from Neisseria gonorrhoeae
Classification: ELECTRON TRANSPORT
Source organism: Neisseria gonorrhoeae F62
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-10-03
Authors: Zhong, F., Ragusa, M.J., Pletneva, E.V.
PDB entry 8uf4: Crystal structure of wildtype dystroglycan proteolytic domain (juxtamembrane domain)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-10-03
Authors: Anderson, M.J.M., Shi, K., Hayward, A.N., Uhlens, C., Evans III, R.L., Grant, E., Greenberg, L., Aihara, H., Gordon, W.R.
PDB entry 8uf5: Catalytic domain of GtfB in complex with inhibitor G43
Classification: CELL ADHESION
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-10-03
Authors: Schormann, N., Deivanayagam, C., Velu, S.
PDB entry 8uf6: Structure of Trek-1(K2P2.1) with ML336
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-10-03
Authors: Lolicato, M., Mondal, A., Minor, D.L.
PDB entry 8uf7: Cryo-EM structure of POmAb, a Type-I anti-prothrombin antiphospholipid antibody, bound to kringle-1 of human prothrombin
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-03
Authors: Kumar, S., Summers, B., Basore, K., Pozzi, N.
PDB entry 8uf8: Cryo-EM structure of alpha-Klotho
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2023-10-03
Authors: Schnicker, N.J., Xu, Z., Mohammad, A., Gakhar, L., Huang, C.L.
PDB entry 8uf9: EcDsbA in complex with 2-benzyl-4-phenylthiazole-5-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-10-04
Authors: Wang, G., Heras, B.
PDB entry 8ufa: Eastern equine encephalitis virus (PE-6) VLP (asymmetric unit)
Classification: VIRAL PROTEIN
Source organism: Eastern equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-10-04
Authors: Adams, L.J., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8ufb: Eastern equine encephalitis virus (PE-6) VLP in complex with full-length VLDLR (asymmetric unit)
Classification: VIRAL PROTEIN
Source organism: Eastern equine encephalitis virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2023-10-04
Authors: Adams, L.J., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8ufc: Eastern equine encephalitis virus (PE-6) VLP in complex with VLDLR LA(1-2) (asymmetric unit)
Classification: VIRAL PROTEIN
Source organism: Eastern equine encephalitis virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2023-10-04
Authors: Adams, L.J., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8ufd: Multidrug efflux pump MtEfpA bound with inhibitor BRD8000.3
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-10-04
Authors: Wang, S., Liao, M.
PDB entry 8ufe: Multidrug efflux pump EfpA from mycobacterium smegmatis
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-10-04
Authors: Wang, S., Liao, M.
PDB entry 8uff: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAAGTGGG) in Ternary Complex with DB1976
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-10-04
Authors: Terrell, J.R., Poon, G.M.K., Wilson, W.D.
PDB entry 8ufg: Acinetobacter baylyi LptB2FG bound to Acinetobacter baylyi lipopolysaccharide
Classification: LIPID TRANSPORT
Source organism: Acinetobacter baylyi ADP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-04
Authors: Pahil, K.S., Gilman, M.S.A., Baidin, V., Kruse, A.C., Kahne, D.
PDB entry 8ufh: Acinetobacter baylyi LptB2FG bound to Acinetobacter baylyi lipopolysaccharide and a macrocyclic peptide
Classification: LIPID TRANSPORT
Source organism: Acinetobacter baylyi ADP1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-04
Authors: Pahil, K.S., Gilman, M.S.A., Baidin, V., Kruse, A.C., Kahne, D.
PDB entry 8ufi: Cryo-EM structure of bovine phosphodiesterase 6
Classification: SIGNALING PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-04
Authors: Aplin, C., Cerione, R.A.
PDB entry 8ufj: Structure of M. mazei GS(R167L-A168G) apo form
Classification: LIGASE
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-10-04
Authors: Schumacher, M.A.
PDB entry 8ufk: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGCGGAAGTG)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2023-10-04
Authors: Terrell, J.R., Poon, G.M.K., Wilson, W.D.
PDB entry 8ufl: Crystal Structure of SARS-Unique Domain (SUD) of Nsp3 from SARS coronavirus
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-10-04
Authors: Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8ufm: Crystal Structure of L516C/Y647C Mutant of SARS-Unique Domain (SUD) from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-10-04
Authors: Minasov, G., Shuvalova, L., Brunzelle, J.S., Rosas-Lemus, M., Kiryukhina, O., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8ufn: Crystal Structure of neuronal HAstV VA1 capsid spike domain at 2.73 A resolution
Classification: VIRAL PROTEIN
Source organism: Astrovirus VA1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-10-04
Authors: Ghosh, A., Delgado-Cunningham, K., DuBois, R.M.
PDB entry 8ufo: Crystal Structure of Gastrointestinal HAstV VA1 capsid spike domain at 1.46 A resolution
Classification: VIRAL PROTEIN
Source organism: Astrovirus VA1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-10-04
Authors: Ghosh, A., DuBois, R.M.
PDB entry 8ufp: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain in complex with 4-methyl-7-(4-methyl-2,3,4,5-tetrahydrobenzo[f][1,4]oxazepin-7-yl)quinolin-2-amine dihydrochloride
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-04
Authors: Li, H., Poulos, T.L.
PDB entry 8ufq: Structure of human neuronal nitric oxide synthase R354A/G357D/E597Q mutant heme domain obtained after soaking crystal with 4-methyl-7-(4-methyl-2,3,4,5-tetrahydrobenzo[f][1,4]oxazepin-7-yl)quinolin-2-amine dihydrochloride
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-10-04
Authors: Li, H., Poulos, T.L.
PDB entry 8ufr: Structure of human endothelial nitric oxide synthase heme domain in complex with 4-methyl-7-(4-methyl-2,3,4,5-tetrahydrobenzo[f][1,4]oxazepin-7-yl)quinolin-2-amine dihydrochloride
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.871 Å
Deposited: 2023-10-04
Authors: Li, H., Poulos, T.L.
PDB entry 8ufs: Structure of human endothelial nitric oxide synthase E361Q mutant heme domain obtain after soaking crystal with 4-methyl-7-(4-methyl-2,3,4,5-tetrahydrobenzo[f][1,4]oxazepin-7-yl)quinolin-2-amine dihydrochloride
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-10-04
Authors: Li, H., Poulos, T.L.
PDB entry 8uft: Structure of human endothelial nitric oxide synthase P370N mutant heme domain in complex with 4-methyl-7-(4-methyl-2,3,4,5-tetrahydrobenzo[f][1,4]oxazepin-7-yl)quinolin-2-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-10-04
Authors: Li, H., Poulos, T.L.
PDB entry 8ufu: Structure of human endothelial nitric oxide synthase heme domain in complex with 7-(9-amino-6,7,8,9-tetrahydro-5H-benzo[7]annulen-2-yl)-4-methylquinolin-2-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-10-04
Authors: Li, H., Poulos, T.L.
PDB entry 8ufw: CA9 mimic with SLC compound
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.215 Å
Deposited: 2023-10-04
Authors: Peat, T.S.
PDB entry 8ufx: CAII with SLC compound
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.212 Å
Deposited: 2023-10-04
Authors: Peat, T.S.
PDB entry 8ufy: High Resolution structure of A. viridans Lactate Oxidase
Classification: FLAVOPROTEIN
Source organism: Aerococcus viridans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-10-05
Authors: Lodowski, D.T.
PDB entry 8ufz: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGCGGAAGTG) in Ternary Complex with DB1976
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2023-10-05
Authors: Terrell, J.R., Poon, G.M.K., Wilson, W.D.
PDB entry 8ug0: Crystal structure of de novo designed metal-controlled heterodimer of mutant B1 immunoglobulin-binding domain of Streptococcal Protein G MCHeT_A + MCHeT_B
Classification: DE NOVO PROTEIN
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-10-05
Authors: Mealka, M., Maniaci, B., Stec, B., Huxford, T.
PDB entry 8ug1: Crystal structure of KHK-C and compound 13
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-10-05
Authors: Durbin, J.D., Guo, S.Y.
PDB entry 8ug2: Crystal structure of de novo designed metal-controlled heterodimer of mutant B1 immunoglobulin-binding domain of Streptococcal Protein G MCHeT_A + MCHeT_C
Classification: DE NOVO PROTEIN
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-10-05
Authors: Mealka, M., Maniaci, B., Stec, B., Huxford, T.
PDB entry 8ug3: Crystal structure of KHK-C and compound 23
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-10-05
Authors: Durbin, J.D., Guo, S.Y.
PDB entry 8ug4: Caenorhabditis elegans Otopetrin 8 (CeOtop8) in pH 8.0
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-10-05
Authors: Gan, N., Jiang, Y.
PDB entry 8ug5: Caenorhabditis elegans Otopetrin 8 (CeOtop8) in pH 5.0
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-10-05
Authors: Gan, N., Jiang, Y.
PDB entry 8ug6: Mus musculus Otopetrin 2 (mOTOP2) in pH 5.0
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-10-05
Authors: Gan, N., Jiang, Y.
PDB entry 8ug7: Mus musculus Otopetrin 2 (mOTOP2) in pH 8.0
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-10-05
Authors: Gan, N., Jiang, Y.
PDB entry 8ug8: Mus musculus Otopetrin 2 (mOTOP2) in pH 7.0, intermediate state
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2023-10-05
Authors: Gan, N., Jiang, Y.
PDB entry 8ug9: XBB.1.5 spike/Nb5 complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-10-05
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8uga: Mus musculus Otopetrin 2 (mOTOP2) M374W in pH 8.0
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-10-05
Authors: Gan, N., Jiang, Y.
PDB entry 8ugb: Cryo-EM structure of bovine phosphodiesterase 6 bound to udenafil
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-05
Authors: Aplin, C., Cerione, R.A.
PDB entry 8ugc: FD15: Flat repeat helix-turn-helix-turn protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2023-10-05
Authors: Davila-Hernandez, F., Bera, A.K., Kang, A., Baker, D.
PDB entry 8ugd: In-situ complex III, state I
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8uge: In-situ complex III, state II
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugf: In-situ complex III, state III
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugg: In-situ complex III, state IV
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugh: In-situ structure of typeA supercomplex with lipids in respiratory chain (composite)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugi: High resolution in-situ structure of typeA supercomplex in respiratory chain (I1III2IV1,composite)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugj: In-situ structure of typeB supercomplex in respiratory chain (composite)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugk: High resolution in-situ structure of complex III in respiratory supercomplex (composite)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8ugl: High resolution in-situ structure of complex IV in respiratory supercomplex
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhu, J., Zhang, K.
PDB entry 8ugm: FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, boronic acid-based compound Z27 bound
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-10-05
Authors: Fellner, M.
PDB entry 8ugn: In-situ structure of typeO supercomplex in respiratory chain (composite)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugo: Structure of the complex between Human LIAS and H-protein in the presence of 5'-deoxyadenosine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-10-05
Authors: Esakova, O.A., Warui, D.M., Neti, S.S., Alumasa, J.N., Booker, S.J.
PDB entry 8ugp: In-situ structure of typeA supercomplex in respiratory chain ( local refined map focused on CI iron-sulfur cluster regions )
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2023-10-05
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugq: CryoEM Structure of Maize Streak Virus (MSV) - Geminivirus
Classification: VIRAL PROTEIN
Source organism: Maize streak virus genotype A (isolate Nigeria)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-10-05
Authors: McKenna, R., Bennett, A.B., Mietzsch, M., Hull, J.A.
PDB entry 8ugr: In-situ structure of typeX supercomplex in respiratory chain (composite)
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2023-10-06
Authors: Zheng, W., Zhang, K., Zhu, J.
PDB entry 8ugs: Cryo-EM structure of bovine phosphodiesterase 6 bound to cGMP
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-06
Authors: Aplin, C., Cerione, R.A.
PDB entry 8ugt: E. eligens beta-glucuronidase bound to UNC10206581-G
Classification: HYDROLASE
Source organism: Lachnospira eligens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-10-06
Authors: Simpson, J.B., Redinbo, M.R.
PDB entry 8ugu: Crystal structure of the second bromodomain of human BRD2 in complex with 4IND
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-10-06
Authors: Nithianantham, S., Fischer, M.
PDB entry 8ugv: Crystal structure of the second bromodomain of human BRD2 in complex with 6IND
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-10-06
Authors: Nithianantham, S., Fischer, M.
PDB entry 8ugw: Computational design of highly signaling active membrane receptors through de novo solvent-mediated allosteric networks
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2023-10-06
Authors: Wang, J., Chen, K.Y., Lai, J.K., Russell, A.M., Conners, K., Rutter, M.E., Condon, B., Tung, F., Kodandapani, L., Chau, B., Zhao, X., Benach, J., Baker, K., Hembre, E.J., Barth, P.
PDB entry 8ugy: Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Mianserin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-10-06
Authors: Zilberg, G., Warren, A.L., Wacker, D.
PDB entry 8ugz: Crystal structure of Shewanella benthica Group 1 truncated hemoglobin C51S C71S variant
Classification: HEME-BINDING PROTEIN
Source organism: Shewanella benthica KT99
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-10-06
Authors: Schultz, T.D., Martinez, J.E., Siegler, M.A., Schlessman, J.L., Lecomte, J.T.J.
PDB entry 8uh0: SOS2 co-crystal structure with fragment bound (compound 10)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-10-06
Authors: Gunn, R.J., Lawson, J.D.
PDB entry 8uh1: Crystal structure of T. brucei EIF4E6 in complex with EIF4G5 peptide
Classification: TRANSLATION
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.898 Å
Deposited: 2023-10-06
Authors: Guimaraes, B.G., Penteado, R.F.
PDB entry 8uh2: Complex of C3b with the inhibitor albicin
Classification: IMMUNE SYSTEM
Source organism: Anopheles albimanus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2023-10-06
Authors: Andersen, J.F., Lei, H., Strayer, E., Ribeiro, J.M.
PDB entry 8uh3: Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Setiptiline
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-10-06
Authors: Wacker, D., Parpounas, A.K., Warren, A.L., Zilberg, G.
PDB entry 8uh4: Cryo-EM structure of Maize Streak Virus (MSV) - single head Geminivirus
Classification: VIRUS/DNA
Source organism: Maize streak virus - [Nigeria]; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2023-10-06
Authors: Bennett, A.B., McKenna, R., Mietzsch, M., Hull, J.A.
PDB entry 8uh5: Crystal structure of SARS-CoV-2 main protease in complex with an inhibitor TKB-272
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-10-06
Authors: Bulut, H., Hayashi, H., Kuwata, N., Tsuji, K., Das, D., Tamamura, H., Mitsuya, H.
PDB entry 8uh6: Degrader-induced complex between PTPN2 and CRBN-DDB1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-06
Authors: Catalano, C., Bratkowski, M., Scapin, G., Hao, Q.
PDB entry 8uh7: Structure of T4 Bacteriophage clamp loader bound to the T4 clamp, primer-template DNA, and ATP analog
Classification: REPLICATION/DNA
Source organism: Tequatrovirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.628 Å
Deposited: 2023-10-07
Authors: Gee, C.L., Marcus, K., Kelch, B.A., Makino, D.L.
PDB entry 8uh8: Crystal structure of SARS-CoV-2 main protease E166V (Apo structure)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-07
Authors: Bulut, H., Hayashi, H., Kuwata, N., Tsuji, K., Das, D., Tamamura, H., Mitsuya, H.
PDB entry 8uh9: Crystal structure of SARS-CoV-2 main protease E166V mutant in complex with an inhibitor TKB-272
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.067 Å
Deposited: 2023-10-07
Authors: Bulut, H., Hayashi, H., Kuwata, N., Tsuji, K., Das, D., Tamamura, H., Mitsuya, H.
PDB entry 8uha: Structure of paused transcription complex Pol II-DSIF-NELF - tilted
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-08
Authors: Vos, S.M., Su, B.G.
PDB entry 8uhb: Cryo-EM Structure of the Ro5256390-bound hTA1-Gs heterotrimer signaling complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-10-08
Authors: Zilberg, G., Warren, A.L., Parpounas, A.K., Wacker, D.
PDB entry 8uhd: Structure of paused transcription complex Pol II-DSIF-NELF - post-translocated
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-10-08
Authors: Su, B.G., Vos, S.M.
PDB entry 8uhe: Structure of the far-red light-absorbing allophycocyanin core expressed during FaRLiP
Classification: PHOTOSYNTHESIS
Source organism: Synechococcus sp. PCC 7335
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-10-09
Authors: Gisriel, C.J., Bryant, D.A., Brudvig, G.W., Shen, G.
PDB entry 8uhf: Cryo-EM of Vibrio cholerae toxin co-regulated pilus - asymmetric reconstruction
Classification: CELL ADHESION
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-09
Authors: Sonani, R.R., Kundra, S., Craig, L., Egelman, E.H.
PDB entry 8uhg: Structure of paused transcription complex Pol II-DSIF-NELF - poised post-translocated
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-09
Authors: Vos, S.M., Su, B.G.
PDB entry 8uhh: anti-Phosphohistidine Fab hSC44.ck.elbow.20.N32F
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-10-09
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.