LiteFold/PDB huggingface dataset:
PDB entry 7dme: Solution structure of human Aha1
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-12-03
Authors: Hu, H., Zhou, C., Zhang, N.
PDB entry 7dmf: A de novo protein that rigidly extends the structure of tVHS-like domain in tepsin with a new designed domain
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2020-12-03
Authors: Xu, Y.
PDB entry 7dmg: Short chain dehydrogenase 2 (SCR2) crystal structure with NADP
Classification: OXIDOREDUCTASE
Source organism: Candida parapsilosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2020-12-03
Authors: Li, Y.H., Zhang, R.Z., Forouhar, F., Wang, C., Montelione, G.T., Szyperski, T., Xu, Y., Hunt, J.F.
PDB entry 7dmk: PL6 alginate lyase BcAlyPL6
Classification: LYASE
Source organism: Bacteroides clarus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.213 Å
Deposited: 2020-12-04
Authors: Dong, S., Wang, B., Ma, X.Q., Li, F.L., Feng, Y.G.
PDB entry 7dml: OXA-48 carbapenemase in complex with (R)-2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-3-yl)acrylic acid
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.936 Å
Deposited: 2020-12-04
Authors: Li, G.-B., Yan, Y.-H.
PDB entry 7dmm: Structure of a glucose isomerase crystal grown in an aqueous glycerol solution without any precipitants
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2020-12-04
Authors: Suzuki, Y., Maita, N.
PDB entry 7dmn: Crystal structure of two pericyclases catalyzing [4+2] cycloaddition
Classification: ISOMERASE
Source organism: Fusarium sp. (strain FN080326)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-12-04
Authors: Chi, C.B., Wang, Z.D., Liu, T., Zhang, Z.Y., Ma, M.
PDB entry 7dmo: Crystal structures of two pericyclases catalyzing [4+2] cycloadditions
Classification: ISOMERASE
Source organism: Pyrenochaetopsis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-12-04
Authors: Wang, Z.D., Chi, C.B., Ma, M.
PDB entry 7dmp: Mouse radial spoke complex
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-12-05
Authors: Zheng, W., Cong, Y.
PDB entry 7dmq: Cryo-EM structure of LshCas13a-crRNA-anti-tag RNA complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Leptotrichia shahii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2020-12-05
Authors: Wang, B., Zhang, T., Ding, J., Patel, D.J., Yang, H.
PDB entry 7dmr: Crystal structure of potassium induced heme modification in yak lactoperoxidase at 2.20 A resolution
Classification: OXIDOREDUCTASE
Source organism: Bos mutus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-12-06
Authors: Singh, P.K., Rani, C., Sharma, P., Sharma, S., Singh, T.P.
PDB entry 7dms: A Fe(II)-binding effector of Yersinia pseudotuberculosis
Classification: METAL BINDING PROTEIN
Source organism: Yersinia pseudotuberculosis serotype I (strain IP32953)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2020-12-07
Authors: Ouyang, S., Hongxin, G.
PDB entry 7dmu: Structure of SARS-CoV-2 spike receptor-binding domain complexed with high affinity ACE2 mutant 3N39
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-12-07
Authors: Arimori, T., Takagi, J.
PDB entry 7dmw: Crystal structure of CcpC regulatory domain in complex with citrate from Bacillus amyloliquefaciens
Classification: TRANSCRIPTION
Source organism: Bacillus velezensis FZB42
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2020-12-08
Authors: Chen, J., Wang, L., Shang, F., Liu, W., Chen, Y., Lan, J., Bu, T., Bai, X., Xu, Y.
PDB entry 7dmx: Photocleavable Fluorescent Protein in green form
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-12-08
Authors: Wen, Y., Lemieux, M.J.
PDB entry 7dmy: The crystal structure of Cpd7 in complex with BPTF bromodomain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-12-08
Authors: Xiong, L., Guo, Y., Yang, S.
PDB entry 7dmz: GMPCPP microtubule complex
Classification: CELL CYCLE
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-12-08
Authors: Wang, Y.X.
PDB entry 7dn0: AJ-GMPCPP-MT-non-seam
Classification: CELL CYCLE
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-12-08
Authors: Wang, Y.X.
PDB entry 7dn1: Hetero-oligomers of SCR-SCR2 crystal structure with NADPH
Classification: OXIDOREDUCTASE
Source organism: Candida parapsilosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2020-12-08
Authors: Li, Y.H., Zhang, R.Z., Forouhar, F., Wang, C., Montelione, G.T., Szyperski, T., Xu, Y., Hunt, J.F.
PDB entry 7dn2: Acidic stable capsid structure of Helicobacter pylori bacteriophage KHP30
Classification: VIRUS
Source organism: Helicobacter pylori bacteriophage KHP30
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2020-12-08
Authors: Kamiya, R., Uchiyama, J., Matsuzaki, S., Murata, K., Iwasaki, K., Miyazaki, N.
PDB entry 7dn3: Structure of Human RNA Polymerase III elongation complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-12-08
Authors: Li, L., Yu, Z., Zhao, D., Ren, Y., Hou, H., Xu, Y.
PDB entry 7dn4: The crystal structure of Cpd8 in complex with BPTF bromodomain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.841 Å
Deposited: 2020-12-08
Authors: Xiong, L., Guo, Y., Yang, S.
PDB entry 7dn5: The cryo-EM structure of human papillomavirus type 58 pseudovirus
Classification: VIRUS
Source organism: Human papillomavirus type 58
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.11 Å
Deposited: 2020-12-08
Authors: He, M.Z., Chi, X., Zha, Z.H., Zheng, Q.B., Li, S.W., Xia, N.S.
PDB entry 7dn6: Crystal structure of bovine lactoperoxidase with hydrogen peroxide trapped between heme iron and his109 at 1.69 A resolution
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.696 Å
Deposited: 2020-12-08
Authors: Singh, P.K., Singh, A.K., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 7dn7: Crystal structure of ternary complexes of lactoperoxidase with hydrogen peroxide at 1.70 A resolution
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-12-09
Authors: Singh, P.K., Singh, A.K., Singh, R.P., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 7dn8: Crystal structure of Salmonella effector SopF in complex with ARF1
Classification: TRANSFERASE
Source organism: Homo sapiens; Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6084 Å
Deposited: 2020-12-09
Authors: Ding, J., Shao, F.
PDB entry 7dn9: Crystal structure of Salmonella effector in complex with NAD and host co-factor ARF1
Classification: TRANSFERASE
Source organism: Homo sapiens; Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2020-12-09
Authors: Ding, J., Shao, F.
PDB entry 7dna: Photocleavable Fluorescent Protein in green and red form
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-12-09
Authors: Wen, Y., Lemieux, J.M.
PDB entry 7dnb: Crystal structure of PhoCl barrel
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2020-12-09
Authors: Wen, Y., Lemieux, J.M.
PDB entry 7dnc: Crystal structure of EV71 3C proteinase in complex with a novel inhibitor
Classification: HYDROLASE
Source organism: Human enterovirus 71
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2020-12-09
Authors: Xie, H., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 7dne: DARPin 5m3_D12 in complex with V3-IY (MN) crown mimetic
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-12-09
Authors: Wu, Y., Plueckthun, A.
PDB entry 7dnf: DARPin 63_B7 in complex with V3-IY (MN) crown mimetic
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2020-12-09
Authors: Wu, Y., Plueckthun, A.
PDB entry 7dng: DARPin 63_B7 in complex with linear V3-crown (MN) peptide
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2020-12-09
Authors: Wu, Y., Plueckthun, A.
PDB entry 7dnh: 2-fold subparticles refinement of human papillomavirus type 58 pseudovirus in complexed with the Fab fragment of 2H3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human papillomavirus type 58; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2020-12-09
Authors: He, M.Z., Chi, X., Zha, Z.H., Zheng, Q.B., Gu, Y., Li, S.W., Xia, N.S.
PDB entry 7dni: MDA5 CARDs-MAVS CARD polyUb complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-12-09
Authors: Song, B., Chen, Y., Luo, D.H., Zheng, J.
PDB entry 7dnj: K63-polyUb MDA5CARDs complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-12-09
Authors: Song, B., Chen, Y., Luo, D.H., Zheng, J.
PDB entry 7dnk: 2-fold subparticles refinement of human papillomavirus type 58 pseudovirus in complexed with the Fab fragment of 5G9
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Human papillomavirus type 58; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.41 Å
Deposited: 2020-12-09
Authors: He, M.Z., Chi, X., Zha, Z.H., Zheng, Q.B., Gu, Y., Li, S.W., Xia, N.S.
PDB entry 7dnl: 2-fold subparticles refinement of human papillomavirus type 58 pseudovirus in complexed with the Fab fragment of A4B4
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Human papillomavirus type 58; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.19 Å
Deposited: 2020-12-09
Authors: He, M.Z., Chi, X., Zha, Z.H., Zheng, Q.B., Gu, Y., Li, S.W., Xia, N.S.
PDB entry 7dnm: Crystal structure of the AgCarB2-C2 complex
Classification: METAL BINDING PROTEIN
Source organism: Arthrobacter globiformis NBRC 12137
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-12-10
Authors: Senda, M., Kumano, T., Watanabe, S., Kobayashi, M., Senda, T.
PDB entry 7dnn: Crystal structure of the AgCarB2-C2 complex with homoorientin
Classification: METAL BINDING PROTEIN
Source organism: Arthrobacter globiformis NBRC 12137
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-12-10
Authors: Senda, M., Kumano, T., Watanabe, S., Kobayashi, M., Senda, T.
PDB entry 7dno: Characterization of Peptide Ligands Against WDR5 Isolated Using Phage Display Technique
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2020-12-10
Authors: Cao, J., Cao, D., Xiong, B., Li, Y., Fan, T.
PDB entry 7dnp: Structure of Brucella abortus SagA
Classification: HYDROLASE
Source organism: Brucella abortus bv. 1 str. 9-941
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-12-10
Authors: Hyun, Y., Ha, N.-C.
PDB entry 7dnq: Crystal structure of M.tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
Classification: LYASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2020-12-10
Authors: Tiwari, S., Pal, R.K., Biswal, B.K.
PDB entry 7dnr: Crystal Structure of Zn-bound SIS Domain of Glucosamine-6-P Synthase from E. coli
Classification: ISOMERASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-12-10
Authors: Gao, C., Xiao, J.
PDB entry 7dns: Crystal structure of domain-swapped dimer of H5_Fold-0 Elsa; de novo designed protein with an asymmetric all-alpha topology
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.327 Å
Deposited: 2020-12-10
Authors: Suzuki, K., Kobayashi, N., Murata, T., Sakuma, K., Kosugi, T., Koga, R., Koga, N.
PDB entry 7dnt: mRNA-decapping enzyme g5Rp
Classification: VIRAL PROTEIN
Source organism: African swine fever virus (strain Badajoz 1971 Vero-adapted)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-12-10
Authors: Yang, Y., Chen, C., Li, L., Li, X.H., Su, D.
PDB entry 7dnu: mRNA-decapping enzyme g5Rp with inhibitor insp6 complex
Classification: VIRAL PROTEIN
Source organism: African swine fever virus (strain Badajoz 1971 Vero-adapted)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.245 Å
Deposited: 2020-12-10
Authors: Yang, Y., Chen, C., Li, L., Li, X.H., Su, D.
PDB entry 7dny: Cryo-EM structure of the human ABCB6 (coproporphyrin III-bound)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-12-11
Authors: Kim, S., Lee, S.S., Park, J.G., Kim, J.W., Kim, S., Kim, N.J., Hong, S., Kang, J.Y., Jin, M.S.
PDB entry 7dnz: Cryo-EM structure of the human ABCB6 (Hemin and GSH-bound)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-12-11
Authors: Kim, S., Lee, S.S., Park, J.G., Kim, J.W., Kim, S., Kim, N.J., Hong, S., Kang, J.Y., Jin, M.S.
PDB entry 7do1: Solution structure of a heteromolecular telomeric (3+1) G-quadruplex containing right loop progression
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2020-12-11
Authors: Fu, W.Q., Jing, H.T., Zhang, N.
PDB entry 7do4: Crystal structure of CD97-CD55 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-12-11
Authors: Niu, M., Song, G.
PDB entry 7do5: Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(apo-form)
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.836 Å
Deposited: 2020-12-12
Authors: Yoshiwara, K., Watanabe, Y., Watanabe, S.
PDB entry 7do6: Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NADP bound-form)
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2020-12-12
Authors: Yoshiwara, K., Watanabe, Y., Watanabe, S.
PDB entry 7do7: Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NAD and L-rhamnose bound-form)
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2020-12-12
Authors: Yoshiwara, K., Watanabe, Y., Watanabe, S.
PDB entry 7doa: Crystal structure of Catabolite repressor acivator from E. coli in complex with HEPES
Classification: GENE REGULATION
Source organism: Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-12-13
Authors: Neetu, N., Katiki, M., Kumar, P.
PDB entry 7dob: Crystal structure of Catabolite repressor activator (Apo)
Classification: GENE REGULATION
Source organism: Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-12-13
Authors: Neetu, N., Katiki, M., Kumar, P.
PDB entry 7doc: Crystal structure of Zika NS2B-NS3 protease with compound 5
Classification: VIRAL PROTEIN
Source organism: Zika virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.904 Å
Deposited: 2020-12-14
Authors: Quek, J.P.
PDB entry 7dod: Capsid structure of human sapovirus
Classification: VIRUS
Source organism: Sapovirus Hu/GI.6/Nichinan/FP05284/2005/JPN
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-12-14
Authors: Miyazaki, N., Murakami, K., Oka, T., Iwasaki, K., Katayama, K., Murata, K.
PDB entry 7dog: Crystal structure of a nuclease and capping domain of SbcD from Staphylococcus aureus
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2020-12-14
Authors: Lee, J., Ha, N.-C.
PDB entry 7doh: Crystal Structure of GD-26 Fab in Complex with TD Peptide from Haloarcula Marismortui Bacteriorhodopsin I
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-12-14
Authors: Lee, C.C., Pao, P.J., Wang, A.H.J.
PDB entry 7doi: Structure of COVID-19 RNA-dependent RNA polymerase bound to penciclovir.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2020-12-14
Authors: Li, Z., Yu, X.
PDB entry 7doj: Solution structure of TGS domain of the Mycobacterium tuberculosis Rel protein
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: SOLUTION NMR
Deposited: 2020-12-14
Authors: Joon, S., Singal, B., Grueber, G.
PDB entry 7dok: Structure of COVID-19 RNA-dependent RNA polymerase (extended conformation) bound to penciclovir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2020-12-14
Authors: Li, Z., Yu, X.
PDB entry 7dol: Mycoplasma genitalium RNase R in complex with double-stranded RNA
Classification: HYDROLASE/RNA
Source organism: Mycoplasma genitalium G37; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2020-12-14
Authors: Abula, A., Quan, X., Li, X., Yang, T., Li, T., Chen, Q., Ji, X.
PDB entry 7doo: Crystal Structure of PenA beta-Lactamase-Avibactam Complex
Classification: HYDROLASE
Source organism: Burkholderia multivorans ATCC 17616
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-12-15
Authors: Nukaga, M., Papp-Wallace, K.M., Bonomo, R.A.
PDB entry 7dop: Structural insights into viral RNA capping and plasma membrane targeting by Chikungunya virus nonstructural protein 1
Classification: VIRAL PROTEIN
Source organism: Chikungunya virus strain S27-African prototype
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2020-12-15
Authors: Zhang, K., Law, Y.S., Law, M.C.Y., Tan, Y.B., Wirawan, M., Luo, D.H.
PDB entry 7doq: Lp major histidine acid phosphatase mutant D281A/5'-AMP
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-12-16
Authors: Guo, Y., Teng, Y.
PDB entry 7dor: E. coli GyrB ATPase domain in complex with 4-nitropheno
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2020-12-16
Authors: Yu, Y., Zhou, H.
PDB entry 7dou: Trimeric cement protein structure of Helicobacter pylori bacteriophage KHP40
Classification: VIRUS
Source organism: Helicobacter phage KHP40
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-12-17
Authors: Kamiya, R., Uchiyama, J., Matsuzaki, S., Murata, K., Iwasaki, K., Miyazaki, N.
PDB entry 7dov: The crystal structure of zebrafish tumor necrosis factor alpha
Classification: CYTOKINE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2020-12-17
Authors: Duan, Y., Xia, C.
PDB entry 7dow: The structure of the Arabidopsis thaliana guanosine deaminase in reaction with 7-deazaguansoine
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-12-17
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dox: The structure of the Arabidopsis thaliana guanosine deaminase in complex with m7G
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-12-17
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7doy: The structure of the Arabidopsis thaliana guanosine deaminase in complex with 6-O-methylguanosine
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2020-12-17
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7doz: HIV-1 Protease D30N mutant in complex with Nelfinavir
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2020-12-17
Authors: Bihani, S.C., Hosur, M.V.
PDB entry 7dp0: Crystal structure of FMN and NADPH-dependent nitroreductase NfnB from sphigopyxis sp. strain HMH
Classification: OXIDOREDUCTASE
Source organism: Sphingopyxis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.10004 Å
Deposited: 2020-12-17
Authors: Kim, S.H., Park, S., Rhee, S.
PDB entry 7dp1: Crystal structure of FMN and NADPH-dependent nitroreductase NfnB mutant Y88A derived from sphigopyxis sp. strain HMH
Classification: OXIDOREDUCTASE
Source organism: Sphingopyxis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.0035 Å
Deposited: 2020-12-17
Authors: Kim, S.H., Park, S., Rhee, S.
PDB entry 7dp2: Crystal structure of FMN and NADPH-dependent nitroreductase NfnB mutant Y88F derived from sphigopyxis sp. strain HMH
Classification: OXIDOREDUCTASE
Source organism: Sphingopyxis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.40009 Å
Deposited: 2020-12-17
Authors: Kim, S.H., Park, S., Rhee, S.
PDB entry 7dp3: Human MCM8 N-terminal domain
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2020-12-17
Authors: Li, J., Liu, L., Liu, Y.
PDB entry 7dp4: Crystal structure of wild type Brugia malayi thymidylate synthase complexed with 2'-deoxyuridine monophosphate and methotrexate
Classification: TRANSFERASE
Source organism: Brugia malayi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-12-18
Authors: Keyunratsami, K., Nualnoi, T., Wongkamchai, S., Songsiriritthigul, C., Chen, C.-J., Canyuk, B.
PDB entry 7dp5: Crystal structure of mutant V45A Brugia malayi thymidylate synthase complexed with 2'-deoxyuridine monophosphate and methotrexate
Classification: TRANSFERASE
Source organism: Brugia malayi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-12-18
Authors: Keyunratsami, K., Nualnoi, T., Wongkamchai, S., Songsiriritthigul, C., Chen, C.-J., Canyuk, B.
PDB entry 7dp6: Crystal structure of mutant V45T Brugia malayi thymidylate synthase complexed with 2'-deoxyuridine monophosphate
Classification: TRANSFERASE
Source organism: Brugia malayi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-12-18
Authors: Keyunratsami, K., Nualnoi, T., Wongkamchai, S., Songsiriritthigul, C., Chen, C.-J., Canyuk, B.
PDB entry 7dp8: Crystal structure of T2R-TTL-Cevipabulin-eribulin complex
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.446 Å
Deposited: 2020-12-18
Authors: Chen, L.J., Chen, Q., Yu, Y., Yang, J.H.
PDB entry 7dpa: Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-12-18
Authors: Kukimoto-Niino, M., Katsura, K., Kaushik, R., Ehara, H., Yokoyama, T., Uchikubo-Kamo, T., Mishima-Tsumagari, C., Yonemochi, M., Ikeda, M., Hanada, K., Zhang, K.Y.J., Shirouzu, M.
PDB entry 7dpd: Human MCM9 N-terminal domain
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2020-12-18
Authors: Li, J., Liu, L., Liu, Y.
PDB entry 7dpe: RNA methyltransferase METTL4
Classification: TRANSFERASE/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.751 Å
Deposited: 2020-12-18
Authors: Luo, Q., Ma, J.B.
PDB entry 7dpf: Cryo-EM structure of Coxsackievirus B1 mature virion
Classification: VIRUS
Source organism: Coxsackievirus B1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-12-18
Authors: Zheng, Q., Li, S.
PDB entry 7dpg: Cryo-EM structure of Coxsackievirus B1 empty particle
Classification: VIRUS
Source organism: Coxsackievirus B1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-12-18
Authors: Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q., Xia, N.
PDB entry 7dph: H-Ras Q61H in complex with GppNHp (state 1) after structural transition by humidity control
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2020-12-19
Authors: Taniguchi, H., Matsumoto, S., Kawamura, T., Kumasaka, T., Kataoka, T.
PDB entry 7dpi: Plasmodium falciparum cytoplasmic Phenylalanyl-tRNA synthetase in complex with BRD7929
Classification: LIGASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.597 Å
Deposited: 2020-12-19
Authors: Manmohan, S., Malhotra, N., Harlos, K., Manickam, Y., Sharma, A.
PDB entry 7dpj: H-Ras Q61L in complex with GppNHp (state 1) after structural transition by humidity control
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.976 Å
Deposited: 2020-12-19
Authors: Taniguchi, H., Matsumoto, S., Miyamoto, R., Kawamura, T., Kumasaka, T., Kataoka, T.
PDB entry 7dpk: The structure of the exchange reaction of the Arabidopsis thaliana guanosine deaminase in complex with 7-deazaguaosine by guanosine
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-12-19
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dpm: Crystal structure of SARS-CoV-2 Spike RBD in complex with MW06 Fab
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.304 Å
Deposited: 2020-12-20
Authors: Wang, J., Jiao, S., Wang, R., Zhang, J., Zhang, M., Wang, M.
PDB entry 7dpn: Crystal structure of BRD2(BD1)with ligand ZB-BD-224 bound
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79999 Å
Deposited: 2020-12-20
Authors: Li, Z., Lu, T., Chen, P., Luo, C., Zhou, B.
PDB entry 7dpo: Crystal Structure of BRD2(BD2)with Ligand ZB-BD-224 bound
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29994 Å
Deposited: 2020-12-21
Authors: Li, Z., Lu, T., Chen, P., Luo, C., Zhou, B.
PDB entry 7dpp: SARS-CoV-2 3CL protease (3CLpro) in complex with myricetin
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-12-21
Authors: Su, H.X., Zhao, W.F., Xie, H., Li, M.J., Xu, Y.C.
PDB entry 7dpq: HIV-1 Protease D30N mutant
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-12-21
Authors: Bihani, S.C., Hosur, M.V.
PDB entry 7dpr: E. coli GyrB ATPase domain in complex with methyl 3,4-dihydroxybenzoate
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-12-21
Authors: Yu, Y., Zhou, H.
PDB entry 7dps: E. coli GyrB ATPase domain in complex with Methyl 4-hydroxycinnamate
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2020-12-21
Authors: Yu, Y., Zhou, H.
PDB entry 7dpt: Structural basis for ligand binding modes of CTP synthase
Classification: LIGASE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2020-12-21
Authors: Liu, J.L., Zhou, X., Guo, C.J., Chang, C.C.
PDB entry 7dpu: SARS-CoV-2 3CL protease (3CLpro) in complex with 7-O-methyl-myricetin
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-12-21
Authors: Su, H.X., Zhao, W.F., Xie, H., Li, M.J., Xu, Y.C.
PDB entry 7dpv: SARS-CoV-2 3CL protease (3CLpro) in complex with 7-O-methyl-dihydromyricetin
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-12-21
Authors: Su, H.X., Zhao, W.F., Xie, H., Li, M.J., Xu, Y.C.
PDB entry 7dpw: Structural basis for ligand binding modes of CTP synthase
Classification: LIGASE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2020-12-21
Authors: Liu, J.L., Zhou, X., Guo, C.J., Chang, C.C.
PDB entry 7dpx: Crystal structure of the SRCR domain of human SCARA1/CD204
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2020-12-21
Authors: Cheng, C., He, Y.
PDB entry 7dpy: Structure of Brucella abortus PhiA
Classification: UNKNOWN FUNCTION
Source organism: Brucella abortus bv. 1 str. 9-941
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-12-22
Authors: Hyun, Y., Ha, N.-C.
PDB entry 7dpz: Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR
Classification: VIRUS
Source organism: Coxsackievirus B1; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-12-22
Authors: Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.
PDB entry 7dq0: Crystal structure of actinomycin D-echinomycin-d(ACGTGCT/AGCTCGT) complex
Classification: ANTIBIOTIC/DNA
Source organism: Streptomyces sp.; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-12-22
Authors: Satange, R.B., Hou, M.H.
PDB entry 7dq1: Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR at physiological temperature
Classification: VIRUS
Source organism: Coxsackievirus B1; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-12-22
Authors: Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.
PDB entry 7dq4: Cryo-EM structure of CAR triggered Coxsackievirus B1 A-particle
Classification: VIRUS
Source organism: Coxsackievirus B1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-12-22
Authors: Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.
PDB entry 7dq5: Crystal structure of HitB in complex with (S)-beta-phenylalanine sulfamoyladenosine
Classification: LIGASE
Source organism: Embleya scabrispora
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-12-22
Authors: Kudo, F., Takahashi, S., Miyanaga, A., Nakazawa, Y., Eguchi, T.
PDB entry 7dq6: Crystal structure of HitB in complex with (S)-beta-3-Br-phenylalanine sulfamoyladenosine
Classification: LIGASE
Source organism: Embleya scabrispora
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-12-22
Authors: Kudo, F., Takahashi, S., Miyanaga, A., Nakazawa, Y., Eguchi, T.
PDB entry 7dq7: Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 5F5
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Coxsackievirus B1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-12-22
Authors: Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.
PDB entry 7dq8: Crystal structure of actinomycin D-echinomycin-d(ACGCGCT/AGCTCGT) complex
Classification: ANTIBIOTIC/DNA
Source organism: Streptomyces sp.; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-12-22
Authors: Satange, R.B., Hou, M.H.
PDB entry 7dq9: Crystal structure of a type-A feruloyl esterase from gut Alistipes shahii
Classification: HYDROLASE
Source organism: Alistipes shahii WAL 8301
Experimental method: X-RAY DIFFRACTION
Resolution: 1.702 Å
Deposited: 2020-12-22
Authors: Wei, X., Gu, T.Y., Xin, F.J., Wang, Y.L.
PDB entry 7dqa: Cryo-EM structure of SARS-CoV2 RBD-ACE2 complex
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-12-22
Authors: Wang, J., Lan, J., Wang, X.Q., Wang, H.W.
PDB entry 7dqb: Crystal structure of an IclR homolog complexed with 4-hydroxybenzoate from Microbacterium hydrocarbonoxydans in P212121 form
Classification: TRANSCRIPTION
Source organism: Microbacterium hydrocarbonoxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.101 Å
Deposited: 2020-12-23
Authors: Akiyama, T., Sasaki, Y., Ito, S., Yajima, S.
PDB entry 7dqc: Crystal structure of nucleotide-free mutant A(S23C)3B(N64C)3 complex from Enterococcus hirae V-ATPase
Classification: HYDROLASE
Source organism: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.706 Å
Deposited: 2020-12-23
Authors: Maruyama, S., Suzuki, K., Mizutani, K., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Murata, M.
PDB entry 7dqd: Crystal structure of the AMP-PNP-bound mutant A(S23C)3B(N64C)3 complex from enterococcus hirae V-ATPase
Classification: HYDROLASE
Source organism: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.383 Å
Deposited: 2020-12-23
Authors: Maruyama, S., Suzuki, K., Mizutani, K., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Murata, T.
PDB entry 7dqe: Crystal structure of the ADP-bound mutant A(S23C)3B(N64C)3 complex from enterococcus hirae V-ATPase
Classification: HYDROLASE
Source organism: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.694 Å
Deposited: 2020-12-23
Authors: Maruyama, S., Nakamoto, K., Suzuki, K., Mizutani, K., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Murata, T.
PDB entry 7dqf: E. coli GyrB ATPase domain in complex with methyl 2,4-dihydroxybenzoate
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-12-23
Authors: Yu, Y., Zhou, H.
PDB entry 7dqg: Crystal structure of Salmonella phage acetyltransferase
Classification: TRANSFERASE
Source organism: Salmonella phage SPN3US
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2020-12-23
Authors: Hyun, Y., Ha, N.-C.
PDB entry 7dqh: E. coli GyrB ATPase domain in complex with 2-hydroxybenzamide
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2020-12-23
Authors: Yu, Y., Zhou, H.
PDB entry 7dqi: E. coli GyrB ATPase domain in complex with Esculetin
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2020-12-23
Authors: Yu, Y., Zhou, H.
PDB entry 7dqj: E. coli GyrB ATPase domain in complex with 3,4-Dihydroxyacetophenone
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2020-12-24
Authors: Yu, Y., Zhou, H.
PDB entry 7dqk: A nicotine MATE transporter, Nicotiana tabacum MATE2 (NtMATE2)
Classification: TRANSPORT PROTEIN
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2020-12-24
Authors: Tanaka, Y., Tsukazaki, T., Sasaki, A., Iwaki, S.
PDB entry 7dql: E. coli GyrB ATPase domain in complex with 4-chlorobenzene-1,2-diol
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2020-12-24
Authors: Yu, Y., Zhou, H.
PDB entry 7dqm: E. coli GyrB ATPase domain in complex with Naringenin
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2020-12-24
Authors: Yu, Y., Zhou, H.
PDB entry 7dqn: The structure of the Arabidopsis thaliana guanosine deaminase mutant Y185F complexed with guanosine
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-12-24
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dqo: Marsupenaeus japonicus ferritin mutant-D132R
Classification: METAL BINDING PROTEIN
Source organism: Penaeus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.701 Å
Deposited: 2020-12-24
Authors: Tan, X., Liu, Y., Zang, J., Zhang, T., Zhao, G.
PDB entry 7dqp: Thermal treated Marsupenaeus japonicus ferritin
Classification: METAL BINDING PROTEIN
Source organism: Penaeus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.203 Å
Deposited: 2020-12-24
Authors: Tan, X., Liu, Y., Zang, J., Zhang, T., Zhao, G.
PDB entry 7dqq: Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase Y91F/C120S variant in complex with O6-methyldeoxyguanosine
Classification: TRANSFERASE
Source organism: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-12-24
Authors: Kikuchi, M., Yamauchi, T., Iizuka, Y., Tsunoda, M.
PDB entry 7dqr: Crystal structure of Sulfurisphaera tokodaii methylated O6-methylguanine methyltransferase
Classification: TRANSFERASE
Source organism: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2020-12-24
Authors: Kikuchi, M., Yamauchi, T., Iizuka, Y., Tsonoda, M.
PDB entry 7dqs: E. coli GyrB ATPase domain in complex with 2-chlorophenol
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-12-24
Authors: Yu, Y., Zhou, H.
PDB entry 7dqt: Crystal structure of O6-methylguanine methyltransferase Y91F variant
Classification: TRANSFERASE
Source organism: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2020-12-24
Authors: Kikuchi, M., Iizuka, Y., Yamauchi, T., Tsunoda, M.
PDB entry 7dqu: E. coli GyrB ATPase domain in complex with methyl 4-hydroxybenzoate
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2020-12-24
Authors: Yu, Y., Zhou, H.
PDB entry 7dqv: Crystal structure of a CmABCB1 mutant
Classification: TRANSPORT PROTEIN
Source organism: Cyanidioschyzon merolae (strain 10D)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-12-24
Authors: Matsuoka, K., Nakatsu, T., Kato, H.
PDB entry 7dqw: E. coli GyrB ATPase domain in complex with 4-chlorophenol
Classification: ISOMERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2020-12-24
Authors: Yu, Y., Zhou, H.
PDB entry 7dqx: Crystal structure of xanthine dehydrogenase family protein
Classification: OXIDOREDUCTASE
Source organism: Paenarthrobacter nicotinovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.44 Å
Deposited: 2020-12-24
Authors: Lei, W.
PDB entry 7dqz: Crystal structure of SARS 3C-like protease in apo form
Classification: VIRAL PROTEIN
Source organism: Human SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-12-24
Authors: Zhang, Y.T., Gao, H.X., Zhou, H., Zhong, F.L., Hu, X.H., Zhou, X.L., Lin, C., Wang, Q.S., Li, J., Zhang, J.
PDB entry 7dr0: Structure of Wild-type PSI monomer1 from Cyanophora paradoxa
Classification: PHOTOSYNTHESIS
Source organism: Cyanophora paradoxa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-12-25
Authors: Kato, K., Nagao, R., Akita, F., Miyazaki, N., Shen, J.R.
PDB entry 7dr1: Structure of Wild-type PSI monomer2 from Cyanophora paradoxa
Classification: PHOTOSYNTHESIS
Source organism: Cyanophora paradoxa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-12-25
Authors: Kato, K., Nagao, R., Akita, F., Miyazaki, N., Shen, J.R.
PDB entry 7dr2: Structure of GraFix PSI tetramer from Cyanophora paradoxa
Classification: PHOTOSYNTHESIS
Source organism: Cyanophora paradoxa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-12-25
Authors: Kato, K., Nagao, R., Akita, F., Miyazaki, N., Shen, J.R.
PDB entry 7dr4: Complex of anti-human IL-2 antibody and human IL-2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2020-12-25
Authors: Kim, M.S., Kim, J.E.
PDB entry 7dr6: PA28alpha-beta in complex with immunoproteasome
Classification: HYDROLASE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2020-12-26
Authors: Cong, Y., Xu, C.
PDB entry 7dr7: bovine 20S immunoproteasome
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-12-26
Authors: Xu, C., Cong, Y.
PDB entry 7dr8: Crystal structure of MERS-CoV 3CL protease in spacegroup P212121
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33815 Å
Deposited: 2020-12-26
Authors: Zhang, Y.T., Gao, H.X., Zhou, H., Zhong, F.L., Hu, X.H., Zhou, X.L., Lin, C., Wang, Q.S., Li, J., Zhang, J.
PDB entry 7dr9: Crystal structure of MERS-CoV 3CL protease (C148A) in spacegroup P212121
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77587 Å
Deposited: 2020-12-27
Authors: Zhong, F.L., Lin, C., Zhang, J., Li, J.
PDB entry 7dra: Crystal structure of MERS-CoV 3CL protease (C148A) in spacegroup P212121,pH 9.0
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7841 Å
Deposited: 2020-12-27
Authors: Zhang, Y.T., Zhou, X.L., Li, J., Zhang, J.
PDB entry 7drb: Crystal structure of plant receptor like protein RXEG1 with xyloglucanase XEG1
Classification: PLANT PROTEIN
Source organism: Nicotiana benthamiana; Phytophthora sojae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2020-12-27
Authors: Sun, Y., Wang, Y., Zhang, X.X., Chen, Z.D., Xia, Y.Q., Sun, Y.J., Zhang, M.M., Xiao, Y., Han, Z.F., Wang, Y.C., Chai, J.J.
PDB entry 7drc: Cryo-EM structure of plant receptor like protein RXEG1 in complex with xyloglucanase XEG1 and BAK1
Classification: PLANT PROTEIN
Source organism: Nicotiana benthamiana; Phytophthora sojae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2020-12-27
Authors: Sun, Y., Wang, Y., Zhang, X.X., Chen, Z.D., Xia, Y.Q., Sun, Y.J., Zhang, M.M., Xiao, Y., Han, Z.F., Wang, Y.C., Chai, J.J.
PDB entry 7drd: Cryo-EM structure of DgpB-C at 2.85 angstrom resolution
Classification: BIOSYNTHETIC PROTEIN
Source organism: human intestinal bacterium PUE
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2020-12-28
Authors: Mori, T., Moriya, T., Adachi, N., Senda, T., Abe, I.
PDB entry 7dre: Cryo-EM structure of DfgA-B at 2.54 angstrom resolution
Classification: BIOSYNTHETIC PROTEIN
Source organism: [Eubacterium] cellulosolvens 6
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2020-12-28
Authors: Mori, T., Moriya, T., Adachi, N., Senda, T., Abe, I.
PDB entry 7drg: Pseudomonas aeruginosa T6SS protein PA0821
Classification: ANTITOXIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-12-28
Authors: She, Z.
PDB entry 7dri: Structure of SspE_CTD_41658
Classification: DNA BINDING PROTEIN
Source organism: Streptomyces scabiei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2020-12-28
Authors: Haiyan, G., Jinchuan, Z., Chen, S., Wang, L., Wu, G.
PDB entry 7drj: Crystal structure of phosphatidylglycerol phosphate synthase in complex with phosphatidylglycerol phosphate
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain N315)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-12-28
Authors: Yang, B.W., Liu, Z.F.
PDB entry 7drk: Crystal structure of phosphatidylglycerol phosphate synthase in complex with cytidine diphosphate-diacylglycerol
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain N315)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2020-12-28
Authors: Yang, B.W., Liu, Z.F.
PDB entry 7drm: Structure of ATP-grasp ligase PsnB complexed with minimal precursor, Mg, and ADP
Classification: LIGASE
Source organism: Plesiocystis pacifica SIR-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.28 Å
Deposited: 2020-12-29
Authors: Song, I., Yu, J., Song, W., Kim, S.
PDB entry 7drn: Structure of ATP-grasp ligase PsnB complexed with precursor peptide PsnA2 and AMPPNP
Classification: LIGASE
Source organism: Plesiocystis pacifica SIR-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.56 Å
Deposited: 2020-12-29
Authors: Song, I., Yu, J., Song, W., Kim, S.
PDB entry 7dro: Structure of ATP-grasp ligase PsnB complexed with minimal precursor
Classification: LIGASE
Source organism: Plesiocystis pacifica SIR-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2020-12-29
Authors: Song, I., Yu, J., Song, W., Kim, S.
PDB entry 7drp: Structure of ATP-grasp ligase PsnB complexed with phosphomimetic variant of minimal precursor, Mg, and ADP
Classification: LIGASE
Source organism: Plesiocystis pacifica SIR-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2020-12-29
Authors: Song, I., Yu, J., Song, W., Kim, S.
PDB entry 7drq: Crystal structure of polysaccharide lyase Uly1
Classification: LYASE
Source organism: Catenovulum maritimum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2020-12-29
Authors: Chen, X.L., Cao, H.Y., Xu, F., Dong, F.
PDB entry 7drr: Structure of SspE-R100A protein
Classification: HYDROLASE
Source organism: Streptomyces yokosukanensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.48 Å
Deposited: 2020-12-29
Authors: Haiyan, G., Jinchuan, Z., Chen, S., Wang, L., Wu, G.
PDB entry 7drs: Structure of SspE_40224
Classification: HYDROLASE
Source organism: Streptomyces yokosukanensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.42 Å
Deposited: 2020-12-29
Authors: Haiyan, G., Jinchuan, Z., Chen, S., Wang, L., Wu, G.
PDB entry 7drt: Human Wntless in complex with Wnt3a
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2020-12-29
Authors: Zhong, Q., Zhao, Y., Ye, F., Xiao, Z., Huang, G., Zhang, Y., Lu, P., Xu, W., Zhou, Q., Ma, D.
PDB entry 7dru: Crystal Structure of the Dog Lipocalin Allergen Can f 1
Classification: ALLERGEN
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-12-29
Authors: Suda, K., Muroya, H., Nishimura, S., Inui, T.