LiteFold/PDB huggingface dataset:
PDB entry 9pff: Min22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a H3:SNAP-25 SN1), non-hydrolyzing, class 27
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-07-04
Authors: White, K.I., Brunger, A.T.
PDB entry 9pfg: Min22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a H3:SNAP-25 SN1), 4:2:2 alphaSNAP-syntaxin-1a H3-SNAP-25 SN1 subcomplex local refinement, non-hydrolyzing, class 28
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2025-07-04
Authors: White, K.I., Brunger, A.T.
PDB entry 9pfh: Crystal structure of SARS-CoV-2 Mpro Mutant P132H with C5a
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2025-07-04
Authors: Kenward, C., Mosimann, W.A., Worrall, L.J., Strynadka, N.C.J.
PDB entry 9pfi: Crystal structure of SARS-CoV-2 Mpro Mutant P132H
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-07-04
Authors: Kenward, C., Mosimann, W.A., Worrall, L.J., Strynadka, N.C.J.
PDB entry 9pfl: Crystal structure of human 15-PGDH in complex with small molecule compound 1
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-07-05
Authors: Shaik, M.M., Brennan, D.
PDB entry 9pfm: Crystal structure of human 15-PGDH in complex with small molecule compound 8b
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-07-06
Authors: Shaik, M.M., Brennan, D.
PDB entry 9pfn: Structure of POU2F3 POU domains bound to coactivator OCA-T2 and DNA (2.8 angstrom resolution)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2025-07-06
Authors: Ipsaro, J.J., Alpsoy, A., Vakoc, C.R., Joshua-Tor, L.
PDB entry 9pfo: Structure of POU2F3 POU domains bound to coactivator OCA-T2 and DNA (2.1 angstrom resolution)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-06
Authors: Ipsaro, J.J., Alpsoy, A., Vakoc, C.R., Joshua-Tor, L.
PDB entry 9pfp: Structure of POU2F3 POU domains bound to coactivator OCA-T1 and DNA
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-07-06
Authors: Ipsaro, J.J., Alpsoy, A., Vakoc, C.R., Joshua-Tor, L.
PDB entry 9pfq: The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-bapE promoter transcription activation complex
Classification: TRANSCRIPTION/DNA
Source organism: Caulobacter vibrioides NA1000; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.24 Å
Deposited: 2025-07-06
Authors: Singh, R.R., Schumacher, M.A.
PDB entry 9pfv: The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-CCNA_03891/CCNA_01149 promoter transcription activation complex
Classification: TRANSCRIPTION/DNA
Source organism: Caulobacter vibrioides NA1000; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-07-06
Authors: Singh, R.R., Schumacher, M.A.
PDB entry 9pfw: Crystal structure of selenomethionine-substituted N-oxygenase RohS from Pseudomonas syringae pv. tomato str. DC3000 (PstoRohS)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas syringae pv. tomato str. DC3000
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-07
Authors: Wei, Z.-W., Higgins, M.A., Ryan, K.S.
PDB entry 9pfx: Crystal structure of native HDO-family N-oxygenase RohS from Pseudomonas brassicacearum strain DF41 (PbrRohS)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas brassicacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-07-07
Authors: Wei, Z.-W., Higgins, M.A., Ryan, K.S.
PDB entry 9pfy: Crystal structure of nucleoside-diphosphate kinase Cryptosporidium parvum in complex with ATP
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-07-07
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9pg0: Crystal structure of nucleoside-diphosphate kinase Cryptosporidium parvum in complex with AMP
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-07-07
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9pg6: Crystal structure of Glyceraldehyde-3-phosphate dehydrogenase from Bordetella pertussis (NAD bound)
Classification: OXIDOREDUCTASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-07-07
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9pg8: In situ structure of the human mitoribosome in the P-E state
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-07-07
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9pga: The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-didA promoter transcription activation complex
Classification: TRANSCRIPTION/DNA
Source organism: Caulobacter vibrioides NA1000; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2025-07-07
Authors: Singh, R.R., Schumacher, M.A.
PDB entry 9pgb: 4-module Cysteine Rich Eggshell Membrane Protein (CREMP)
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: SOLUTION NMR
Deposited: 2025-07-07
Authors: Zeinalilathori, S., Russell, R.W., Ross, J., Modla, S., Caplan, J., Polenova, T., Thorpe, C.
PDB entry 9pgf: In situ structure of the human mitoribosome in the P state
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-07-07
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9pgg: Cryo-EM structure of bacteriophage P22 gp1-gp5-gp4 complex at 2.76 angstrom
Classification: VIRAL PROTEIN
Source organism: Salmonella phage P22
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-07-07
Authors: Yu, H., Liu, J., Molienux, I.J.
PDB entry 9pgh: The cryo-EM structure of C. crescentus RNAP-Sigma73-CCNA_03891/CCNA_01149 promoter complex
Classification: TRANSCRIPTION/DNA
Source organism: Caulobacter vibrioides NA1000; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2025-07-07
Authors: Singh, R.R., Schumacher, M.A.
PDB entry 9pgi: In situ structure of the human mitoribosome in the A-P-E state with TACO1
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-07-07
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9pgl: In situ structure of the human mitoribosome in the A-P state with TACO1
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-07-08
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9pgm: In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-07-08
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9pgn: Two-conformer equilibrium of maltose-binding protein in the absence of ligand from residual dipolar coupling analysis
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2025-07-08
Authors: Shen, Y., Bax, A.
PDB entry 9pgo: Cryo-EM structure of brain-derived Tau fibril from Alzheimers disease patient tissue
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2025-07-08
Authors: Pierson, J.A., Sanchez, J.C., Kraemer, B.C., Wright, E.R., Latimer, S.C.
PDB entry 9pgp: [S1M] Tensegrity triangle with a 1 nucleotide single stranded region on one side
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 8.02 Å
Deposited: 2025-07-08
Authors: Horvath, A., Wang, M., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pgq: Crystal structure of Glyceraldehyde-3-phosphate dehydrogenase from Bordetella pertussis (Apo, trigonal form)
Classification: OXIDOREDUCTASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-07-08
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9pgr: [18-7B G|A] 18 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2025-07-08
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9pgs: HIV Capsid Hexamer bound to Compound 6
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-08
Authors: Somoza, J.R., Anderson, R.L., Villasenor, A.G., Ferrao, R.D.
PDB entry 9pgt: HIV Capsid Hexamer bound to Compound 12
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-07-08
Authors: Somoza, J.R., Anderson, R.L., Villasenor, A.G., Ferrao, R.D.
PDB entry 9pgu: HIV Capsid Hexamer bound to Compound 40
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2025-07-08
Authors: Somoza, J.R., Anderson, R.L., Villasenor, A.G., Ferrao, R.D.
PDB entry 9pgv: HIV Capsid Hexamer bound to Compound 24
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-08
Authors: Somoza, J.R., Anderson, R.L., Villasenor, A.G., Ferrao, R.D.
PDB entry 9pgw: Crystal structure of STEAP2 N-domain soaked with NADP+ (second collection)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2025-07-08
Authors: Shin, I., Liu, A.
PDB entry 9pgx: Crystal structure of STEAP2 N-domain soaked with NADP+
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2025-07-08
Authors: Shin, I., Liu, A.
PDB entry 9pgy: Crystal structure of STEAP2 N-domain in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-07-08
Authors: Shin, I., Liu, A.
PDB entry 9pgz: X-ray crystal structure of SRD42
Classification: TRANSFERASE
Source organism: Homo sapiens; Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-07-08
Authors: Kuzelka, K.P., Nair, S.K.
PDB entry 9ph2: Crystal structure of Bordetella pertussis DsbA
Classification: OXIDOREDUCTASE
Source organism: Bordetella pertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-07-08
Authors: Penning, S., Mitchell, L., Heras, B., Paxman, J.J.
PDB entry 9ph4: Cryo-EM structure of COP9 signalosome in complex with CSN5i-1a
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-07-08
Authors: Shi, H., Zheng, N.
PDB entry 9pha: CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Classification: VIRAL PROTEIN
Source organism: Spbetavirus SPbeta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-07-09
Authors: Mishra, B.P., Ve, T.
PDB entry 9phb: CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-07-09
Authors: Mishra, B.P., Ve, T.
PDB entry 9phc: In vitro reconstituted complex of purified S. pombe large ribosomal subunit and SNOR
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-07-09
Authors: Gluc, M., Jomaa, A.
PDB entry 9phd: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with fusion inhibitor cyclic peptide CP141076 (CP8)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1)); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-07-09
Authors: Kadam, R.U., Wilson, I.A.
PDB entry 9phg: Ketoreductase Engineering for a Chemoenzymatic Fluorination and Dynamic Kinetic Reduction Cascade
Classification: OXIDOREDUCTASE
Source organism: Sporobolomyces salmonicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.479 Å
Deposited: 2025-07-09
Authors: Hruza, A., Chun, S.
PDB entry 9phh: TTLL5 CID-RPGR BD Complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-07-09
Authors: Liu, R.J.Y., Roll-Mecak, A., Park, J.H., Mahalingan, K.K.
PDB entry 9phi: [18-7B C|A] 18 bp tensegrity triangle that propagates via blunt-end stacking with C stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.02 Å
Deposited: 2025-07-09
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9phk: [19-7B G|T] 19 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on T at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.01 Å
Deposited: 2025-07-09
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9phl: [A4J-A] Asymmetric tensegrity triangle containing a semi-junction formed via in crystallo hybridization
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.25 Å
Deposited: 2025-07-09
Authors: Horvath, A., Wang, M., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9phm: [A4J-R] Asymmetric tensegrity triangle formed via toehold mediated displacement of the center strand
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.55 Å
Deposited: 2025-07-09
Authors: Horvath, A., Wang, M., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9php: [19-7B G|A] 19 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.33 Å
Deposited: 2025-07-09
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9phq: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with fusion inhibitor cyclic peptide CP141088 (CP14)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1)); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2025-07-09
Authors: Kadam, R.U., Wilson, I.A.
PDB entry 9phr: BTB modified at C151 with monobimane
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2025-07-09
Authors: Ragwan, E.R., Kung, Y., Eggler, A.L.
PDB entry 9phs: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with fusion inhibitor cyclic peptide CP141085 (CP1)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1)); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-07-09
Authors: Kadam, R.U., Wilson, I.A.
PDB entry 9pht: Crystal structure of the A/Vietnam/1203/2004 (H5N1) influenza virus hemagglutinin in complex with fusion inhibitor cyclic peptide CP141085 (CP1)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Viet Nam/1203/2004(H5N1)); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2025-07-09
Authors: Kadam, R.U., Wilson, I.A.
PDB entry 9phw: Structure of the D1-Val185Asn mutated photosystem II complex with slow O-O bond formation reveals changes in the Cl1 water channel
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å
Deposited: 2025-07-09
Authors: Flesher, D.A., Debus, R.J., Brudvig, G.W.
PDB entry 9pi3: Single stranded DNA-binding protein (ICP8) from Herpes simplex virus-1, apo form. Mutations: C254S, C455S, K769A, E770A
Classification: DNA BINDING PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-07-10
Authors: Erlandsen, H., Wright, D.
PDB entry 9pi4: Poly dT bound form of Single stranded DNA-binding protein(ICP8) from Herpes simplex virus-1. Mutations: C254S, C455S
Classification: DNA BINDING PROTEIN/DNA
Source organism: Human alphaherpesvirus 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-07-10
Authors: Erlandsen, H., Krucinska, J., Wright, D.
PDB entry 9pi5: Poly dA bound form of Single stranded DNA-binding protein(ICP8) from Herpes simplex virus-1. Mutations: C254S, C455S
Classification: DNA BINDING PROTEIN/DNA
Source organism: Human alphaherpesvirus 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-07-10
Authors: Erlandsen, H., Wright, D.
PDB entry 9pi6: Single stranded DNA-binding protein (ICP8) from Herpes simplex virus-1, apo form.Mutations: K166A, E167A, C254S, C455S
Classification: DNA BINDING PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-07-10
Authors: Erlandsen, H., Wright, D., Weller, S., Wilderman, R., Krucinska, J.
PDB entry 9pi9: Sacituzumab Fab bound to Trop2 Dimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-07-10
Authors: Ferrao, R., Lansdon, E.B.
PDB entry 9pia: Human glutaminase C mutant S482C
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2025-07-10
Authors: Milano, S.K., Ulrich, S.M., Cerione, R.A.
PDB entry 9pib: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with fusion inhibitor CLIPS peptide CP121132 (CP-S1)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1)); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-07-10
Authors: Kadam, R.U., Wilson, I.A.
PDB entry 9pik: Structure of the two-pore domain, outwardly rectifying potassium (TOK1) from Candida albicans, overall structure
Classification: METAL TRANSPORT
Source organism: Candida albicans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-07-10
Authors: Durocher, B., Manville, R.W., Yan, R., Yu, Z., Abbott, G.W., Miller, A.N.
PDB entry 9pio: Cryo-EM structure of the ClpXP AAA+ protease bound to lambdaO-tagged Arc in a recognition complex
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-07-10
Authors: Ghanbarpour, A., Davis, J.H., Sauer, R.T.
PDB entry 9pis: Ab initio structure of crambin by MicroED at 0.85A
Classification: PLANT PROTEIN
Source organism: Crambe hispanica subsp. abyssinica
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 0.85 Å
Deposited: 2025-07-11
Authors: Vasireddy, P.C.R., Low-Beer, T., Spoth, K.A., Acehan, D., Crawley, M.R., Martynowycz, M.W.
PDB entry 9pit: HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-07-11
Authors: Bader, D.L.V., Ozorowski, G., Ward, A.B.
PDB entry 9piv: HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-07-11
Authors: Bader, D.L.V., Ozorowski, G., Ward, A.B.
PDB entry 9pix: Mur14 Fab with HBV c18V pMHC
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-07-11
Authors: Mortenson, D.E.
PDB entry 9piz: Structure of KRAS-G12C bound to 1-[(4aR,10P,13R)-10-[5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl]-11-chloro-9-fluoro-1,2,4a,5-tetrahydropyrazino[1',2':4,5][1,4]oxazino[2,3-c]quinolin-3(4H)-yl]prop-2-en-1-one (compound 15)
Classification: ONCOPROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-07-11
Authors: Hsu, P.L., Oh, A.
PDB entry 9pj2: Crystal structure of non-haem diiron azetidine synthase from Streptomyces cacaoi var. asoensis complexed with iron, L-isoleucine and molecular oxygen
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces cacaoi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-11
Authors: Shen, Y., Zheng, Y.-C., Chang, W.-c.
PDB entry 9pj3: Crystal structure of Non-haem Diiron Azetidine Synthase from Streptomyces cacaoi var. asoensis complexed with manganese and (R)-2-amino-3-methylbut-3-enoic acid
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces cacaoi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-11
Authors: Shen, Y., Zheng, Y.-C., Chang, W.-c.
PDB entry 9pjd: Cryo-EM structure of the ClpXP AAA+ protease bound to an unidentified portion of lambdaO-tagged Arc substrate within a translocation complex
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-07-13
Authors: Ghanbarpour, A., Davis, J.H., Sauer, R.T.
PDB entry 9pjf: GII.4 Human Norovirus 3CL protease bound to compound 27
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Norovirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-07-14
Authors: Campbell, A.C., Opel-Reading, H.K., Krause, K.L.
PDB entry 9pjg: SARS-CoV2 Mpro bound to compound 1
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-07-14
Authors: Campbell, A.C., Opel-Reading, H.K., Krause, K.L.
PDB entry 9pkc: Mur35 Fab with HBV c18V pMHC
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-07-14
Authors: Mortenson, D.E.
PDB entry 9pkf: Mur35 Fab with HBV c18I pMHC
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-07-14
Authors: Mortenson, D.E.
PDB entry 9pkg: In situ human P state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-07-14
Authors: Wei, Z., Yong, X.
PDB entry 9pko: Structure of the two-pore domain, outwardly rectifying potassium (TOK1) from Candida albicans, Up conformation
Classification: METAL TRANSPORT
Source organism: Candida albicans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-07-14
Authors: Durocher, B., Manville, R.W., Yan, R., Yu, Z., Abbott, G.W., Miller, A.N.
PDB entry 9pkp: Structure of the two-pore domain, outwardly rectifying potassium (TOK1) from Candida albicans, Down conformation
Classification: METAL TRANSPORT
Source organism: Candida albicans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-07-14
Authors: Durocher, B., Manville, R.W., Yan, R., Yu, Z., Abbott, G.W., Miller, A.N.
PDB entry 9pkq: Structure of the cytoplasmic domain of unliganded human Tom70, open and closed conformations
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-14
Authors: Bachochin, M.J., McGuire, K.L., Cook, B.D., Ye, Q., Silletti, S., Corbett, K.D., Komives, E.A., Herzik Jr., M.A.
PDB entry 9pkr: SARS-CoV2 main protease bound to compound 26
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-07-14
Authors: Campbell, A.C., Krause, K.L., Opel-Reading, H.K.
PDB entry 9pku: Crystal Structure of YEATS domain of human YEATS2 in complex with LS-131 peptide
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2025-07-14
Authors: xinyi, Y., sha, L.
PDB entry 9pkv: HU-38 Fab with PRAME pMHC
Classification: PEPTIDE BINDING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-07-14
Authors: Mortenson, D.E., Yu, X.
PDB entry 9pkw: Alpha1/Beta Heteromeric Glycine receptor in the presence of 0.200 mM strychnine and 200 nM ivermectin
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-07-14
Authors: Gibbs, E., Chakrapani, S.
PDB entry 9pkx: Alpha1/Beta Heteromeric Glycine receptor in the presence of 0.200 mM strychnine and 500 nM ivermectin
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-07-14
Authors: Gibbs, E., Chakrapani, S.
PDB entry 9pky: Alpha1/Beta Heteromeric Glycine receptor in the presence of 0.200 mM strychnine and 2000 nM ivermectin
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-07-14
Authors: Gibbs, E., Chakrapani, S.
PDB entry 9pkz: Alpha1/Beta Heteromeric Glycine receptor in the presence of 0.200 mM strychnine and 0.02 mM ivermectin
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-07-14
Authors: Gibbs, E., Chakrapani, S.
PDB entry 9pl0: The structure of the Fusobacterium nucleatum Enoyl-Acyl Carrier Protein Reductase (FabK) bound to an inhibitor
Classification: OXIDOREDUCTASE
Source organism: Fusobacterium nucleatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-07-15
Authors: Alaidi, O., Avad, K., Hevener, K.
PDB entry 9pl1: Structure of metastable folding intermediate of V17A/V26A ubiquitin derived from pressure-jump NMR data
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-07-15
Authors: Masoumzadeh, E., Courtney, J.M., Bax, A.
PDB entry 9pl2: Crystal structure of a SnoaL-like domain-containing protein from Mycobacterium ulcerans
Classification: ISOMERASE
Source organism: Mycobacterium ulcerans Agy99
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-07-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9pl9: Cryo-EM structure of modified JEV virus E protein dimer
Classification: VIRAL PROTEIN
Source organism: Japanese encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2025-07-15
Authors: Galkin, A., Pozharski, E., Li, Y.
PDB entry 9plj: Crystal structure of human CYP3A4 with substrate THC
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2025-07-15
Authors: Sevrioukova, I.F.
PDB entry 9plk: Interaction of human CYP3A4 with the drug darifenacin
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-07-15
Authors: Sevrioukova, I.F.
PDB entry 9pln: Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-07-15
Authors: Srinivasan, K., Xu, X., Mailhot, O., Manglik, A., Shoichet, B.
PDB entry 9plo: Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-07-15
Authors: Srinivasan, K., Xu, X., Mailhot, O., Manglik, A., Shoichet, B.
PDB entry 9pls: The 200-K crystal structure of CYP199A4 bound to 3-methylaminobenzoic acid (dataset 1; decreasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.762 Å
Deposited: 2025-07-16
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9plu: [20-7B G|T] 20 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on T at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.67 Å
Deposited: 2025-07-16
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9ply: Crystal structure of the human DCAF1 WDR domain in complex with OICR-40156
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-07-16
Authors: Kimani, S., Dong, A., Li, Y., Seitova, A., Krausser, C., Wilson, B., Al-awar, R., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9plz: [20-7B G|A] 20 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.94 Å
Deposited: 2025-07-16
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pm3: [21-7B G|A] 21 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.15 Å
Deposited: 2025-07-16
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pm6: Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-07-16
Authors: Galkin, A., Pozharski, E., Li, Y.
PDB entry 9pm9: PhuZ Tubulin from phage Goslar (locally refined monomer)
Classification: VIRAL PROTEIN
Source organism: Goslarvirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-07-16
Authors: Basu, D., Gu, Y., Corbett, K.D.
PDB entry 9pma: The 150-K crystal structure of CYP199A4 bound to 3-methylaminobenzoic acid (dataset 2; decreasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.746 Å
Deposited: 2025-07-16
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9pmc: The 100-K crystal structure of CYP199A4 bound to 3-methylaminobenzoic acid (dataset 3; decreasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.507 Å
Deposited: 2025-07-17
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9pmd: Human OCTN2 in an inward-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-07-17
Authors: Davies, J.S., Zeng, Y.Z., Stewart, A.G.
PDB entry 9pme: Crystallographic structure of MazF-E24A toxin bound to SamF
Classification: TOXIN
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2025-07-17
Authors: Pizzolato-Cezar, L.R., Nascimento, A.F.Z., Machini, M.T., Salinas, R.K.
PDB entry 9pmg: [22-7B G|T] 22 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on T at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.68 Å
Deposited: 2025-07-17
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pmh: [22-7B G|A] 22 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.2 Å
Deposited: 2025-07-17
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pmk: PhuZ Tubulin Tetramer from phage Goslar
Classification: VIRAL PROTEIN
Source organism: Goslarvirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-07-17
Authors: Basu, D., Gu, Y., Corbett, K.D.
PDB entry 9pmm: Crystal structure of C. elegans PUF-3 in complex with RNA I-1
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-07-18
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9pmn: Crystal structure of Capsular polysaccharide biosynthesis protein from Bordetella pertussis in complex with NAD and uridine-diphosphate-n-acetylgalactosamine
Classification: ISOMERASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9pmp: Influenza PA-N Endonuclease I38T mutant with compound 1 (3-hydroxy-6-(2-methylphenyl)-4-oxo-1,4-dihydropyridine-2-carboxylic acid)
Classification: LYASE
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2025-07-18
Authors: Kohlbrand, A.J.
PDB entry 9pmr: Influenza PA-N Endonuclease I38T mutant with compound 2 ((6M)-6-(2-ethylphenyl)-3,4-dihydroxypyridine-2-carboxylic acid)
Classification: LYASE
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-07-18
Authors: Kohlbrand, A.J.
PDB entry 9pmw: Structure of HTTQ23-HAP40 complex bound to macrocycles HHL1, HD4 and HL2
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-07-18
Authors: Balakrishnan, S., Deme, J., Lea, S.M., Harding, R.J.
PDB entry 9pmz: Icotinib in complex with wild-type EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-07-18
Authors: Lantry, A.M., Abidakun, O.A., Heppner, D.E.
PDB entry 9pn0: Structure of HTTQ23-HAP40 complex bound to macrocycles HHD3, HD4 and HL2
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-07-18
Authors: Balakrishnan, S., Deme, J., Lea, S.M., Harding, R.J.
PDB entry 9pn2: Influenza PA-N Endonuclease I38T mutant with compound 3 ((6M)-3-hydroxy-6-[2-(methylsulfanyl)phenyl]-4-oxo-1,4-dihydropyridine-2-carboxylic acid)
Classification: LYASE
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-07-18
Authors: Kohlbrand, A.J.
PDB entry 9pn3: Influenza PA-N Endonuclease I38T mutant with compound 4 ((6M)-3-hydroxy-4-oxo-6-(2-phenoxyphenyl)-1,4-dihydropyridine-2-carboxylic acid)
Classification: LYASE
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2025-07-18
Authors: Kohlbrand, A.J.
PDB entry 9pnd: In situ microtubule of EpoB-induced regenerating axons
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-07-20
Authors: Bodakuntla, S., Taira, K., Yamada, Y., Alvarez-Brecht, P., Cada, A.K., Basnet, N., Zhang, R., Martinez-Sanchez, A., Biertumpfel, C., Mizuno, N.
PDB entry 9png: Co-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-07-21
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9pnh: Ni-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-07-21
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9pni: Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-07-21
Authors: Wang, S., Zhou, T., Kwong, P.D.
PDB entry 9pnj: Crystal structure of the GH29-like fucosidase FucWf4
Classification: HYDROLASE
Source organism: Wenyingzhuangia fucanilytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-07-21
Authors: Higgins, M.A.
PDB entry 9pnk: Crystal structure of the GH29-like fucosidase FucWf4 in complex with fucose
Classification: HYDROLASE
Source organism: Wenyingzhuangia fucanilytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2025-07-21
Authors: Higgins, M.A.
PDB entry 9pnl: Influenza PA-N Endonuclease E23K mutant with compound 4 ((6M)-3-hydroxy-4-oxo-6-(2-phenoxyphenyl)-1,4-dihydropyridine-2-carboxylic acid)
Classification: LYASE
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2025-07-21
Authors: Kohlbrand, A.J.
PDB entry 9pnm: Influenza PA-N Endonuclease I38T with compound 3 ((6M)-3-hydroxy-6-[2-(methylsulfanyl)phenyl]-4-oxo-1,4-dihydropyridine-2-carboxylic acid)
Classification: LYASE
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-07-21
Authors: Kohlbrand, A.J.
PDB entry 9pnn: Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-07-21
Authors: Wang, S., Zhou, T., Kwong, P.D., Morano, N.C., Shapiro, L.
PDB entry 9pno: Crystal structure of the Streptococcus pneumoniae HtrA protease PDZ domain
Classification: PEPTIDE BINDING PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-07-21
Authors: Tran, N., Holyoak, T.
PDB entry 9pnq: N4 vRNAP gp50 - Isolated RNAP Domain
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Escherichia phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-07-21
Authors: Bellis, N.F., Lokareddy, R.K., Cingolani, G.
PDB entry 9pnr: N4 vRNAP gp50 - Closed Complex
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Escherichia phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-07-21
Authors: Bellis, N.F., Lokareddy, R.K., Cingolani, G.
PDB entry 9pns: Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM/INHIBITOR
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-21
Authors: Billesboelle, C.B., Manglik, A.
PDB entry 9pnt: N4 vRNAP gp50 - open complex
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Escherichia phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-07-21
Authors: Bellis, N.F., Lokareddy, R.K., Cingolani, G.
PDB entry 9pnu: Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-07-21
Authors: Wang, S., Zhou, T., Kwong, P.D., Morano, N.C., Shapiro, L.
PDB entry 9pnv: N4 vRNAP gp50 bound to P1 Promoter - Isolated RNAP Domain
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Escherichia phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-07-21
Authors: Bellis, N.F., Lokareddy, R.K., Cingolani, G.
PDB entry 9pnw: N4 vRNAP gp50 bound to P1 promoter - closed complex
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Escherichia phage N4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-07-21
Authors: Bellis, N.F., Lokareddy, R.K., Cingolani, G.
PDB entry 9po6: Influenza PA-N Endonuclease with compound 4 ((6M)-3-hydroxy-4-oxo-6-(2-phenoxyphenyl)-1,4-dihydropyridine-2-carboxylic acid)
Classification: LYASE
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2025-07-21
Authors: Kohlbrand, A.J.
PDB entry 9ppm: Mn-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2025-07-21
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9ppn: Cu-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-07-21
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9ppo: Zn-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-07-21
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9ppp: Structure of Alpha Appendage of AP2 bound to the extended FxDxF motif derived of CCDC32
Classification: ENDOCYTOSIS
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-21
Authors: Sloan, D.E., Matthews, A.E., Tedamrongwanish, T., Nicely, N.I., Baker, R.W.
PDB entry 9ppq: Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-07-21
Authors: Kim, J.Y., Wu, Y., Manglik, A., Shoichet, B.K.
PDB entry 9ppr: Zn- and Bi-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-07-21
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9pps: Co- and Bi-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-21
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9ppt: Ni- and Bi-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2025-07-21
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9ppu: Beta-sandwich forming metallopeptide
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2025-07-21
Authors: Dang, V.T., Nguyen, A.I.
PDB entry 9ppv: In situ MicroED structure of human eosinophil major basic protein-1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3 Å
Deposited: 2025-07-22
Authors: Yang, J.E., Bingman, C.A., Mitchell, J., Mosher, D., Wright, E.R.
PDB entry 9ppw: CryoEM structure of delta opioid receptor bound to G proteins and Naltrindole
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-07-22
Authors: Fay, J.F., Che, T.
PDB entry 9ppx: CryoEM structure of delta opioid receptor bound to G proteins and naltrexone
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-07-22
Authors: Fay, J.F., Che, T.
PDB entry 9ppy: CryoEM structure of delta opioid receptor bound to G proteins and met-enkephalin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-07-22
Authors: Fay, J.F., Che, T.
PDB entry 9ppz: CryoEM structure of delta opioid receptor bound to G proteins and SNC80
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-07-22
Authors: Fay, J.F., Che, T.
PDB entry 9pq0: CryoEM structure of delta opioid receptor bound to G proteins and ADL5859
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-07-22
Authors: Fay, J.F., Che, T.
PDB entry 9pq2: Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2025-07-22
Authors: Wang, S., Zhou, T., Kwong, P.D., Morano, N.C., Shapiro, L.
PDB entry 9pq3: Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2025-07-22
Authors: Wang, S., Zhou, T., Kwong, P.D., Morano, N.C., Shapiro, L.
PDB entry 9pq4: Bi-bound structure of the H77C variant of TriCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-07-22
Authors: Eng, V.H., Tezcan, F.A.
PDB entry 9pq5: MBP-Mcl1 in complex with ligand 8
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2025-07-22
Authors: Miller, B.R., Shaffer, P.
PDB entry 9pq6: MBP-Mcl1 in complex with ligand 12
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2025-07-22
Authors: Miller, B.R., Shaffer, P.
PDB entry 9pq7: MBP-Mcl1 in complex with ligand 21b
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2025-07-22
Authors: Miller, B.R., Shaffer, P.
PDB entry 9pq9: Fem-1 homolog B (FEM1B) in complex with VU0421763
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2025-07-22
Authors: Katinas, J.M., Fesik, S.W.