LiteFold/PDB huggingface dataset:
PDB entry 2ytx: Solution structure of the second cold-shock domain of the human KIAA0885 protein (UNR protein)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-05
Authors: Goroncy, A.K., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yty: Solution structure of the fourth cold-shock domain of the human KIAA0885 protein (UNR protein)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-05
Authors: Goroncy, A.K., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ytz: Complex structure of Trm1 from Pyrococcus horikoshii with S-adenosyl-L-Homocystein in the orthorhombic crystal-lattice
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2007-04-05
Authors: Ihsanawati, Shirouzu, M., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yu0: Solution structures of the PAAD_DAPIN domain of mus musculus interferon-activatable protein 205
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2007-04-05
Authors: Sato, M., Tochio, N., Koshiba, S., Watanabe, M., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yu1: Crystal structure of hJHDM1A complexed with a-ketoglutarate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-04-05
Authors: Han, Z.
PDB entry 2yu2: Crystal structure of hJHDM1A without a-ketoglutarate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-04-05
Authors: Han, Z.
PDB entry 2yu3: Solution structure of the domain swapped WingedHelix in DNA-directed RNA polymerase III 39 kDa polypeptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-05
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yu4: Solution structure of the SP-RING domain in non-SMC element 2 homolog (MMS21, S. cerevisiae)
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-05
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yu5: Solution structure of the zf-C2H2 domain (669-699AA) in zinc finger protein 473
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-05
Authors: Kadirvel, S., He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yu6: Solution structure of the YTH domain in YTH domain-containing protein 2
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-05
Authors: Endo, R., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yu7: Solution structure of the SHP-1 C-terminal SH2 domain complexed with a tyrosine-phosphorylated peptide from NKG2A
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2007-04-05
Authors: Kasai, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yu8: Solution structure of the C2H2 type zinc finger (region 648-680) of human Zinc finger protein 347
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Tochio, N., Tomizawa, T., Abe, H., Saito, K., Li, H., Sato, M., Koshiba, S., Kobayashi, N., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yu9: RNA polymerase II elongation complex in 150 mm MG+2 with UTP
Classification: TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2007-04-06
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2yua: Solution structure of the DnaJ domain from human Williams-Beuren syndrome chromosome region 18 protein
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yub: Solution structure of the PDZ domain from mouse LIM domain kinase
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Hayashi, F., Suetake, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuc: Solution structure of the TRAF-type zinc finger domains (102-164) from human TNF receptor associated factor 4
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Hayashi, F., Suetake, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yud: Solution structure of the YTH domain in YTH domain-containing protein 1 (Putative splicing factor YT521)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yue: Solution structure of the NEUZ (NHR) domain in Neuralized from Drosophila melanogaster
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuf: Solution structure of the NCD2 domain in human transcriptional repressor Nab1 protein
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Saito, K., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yug: Solution structure of mouse FRG1 protein
Classification: GENE REGULATION
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Saito, K., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuh: Solution structure of the C-terminal region in human tubulin folding cofactor C
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Saito, K., Tochio, N., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yui: Solution structure of the N-terminal domain in human cytokine-induced apoptosis inhibitor anamorsin
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Saito, K., Tomizawa, T., Tochio, N., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuj: Solution structure of human ubiquitin fusion degradation protein 1 homolog UFD1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Saito, K., Tomizawa, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuk: Solution structure of the HMG box of human Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Tochio, N., Miyamoto, K., Koshiba, S., Harada, T., Watanabe, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yul: Solution structure of the HMG box of human Transcription factor SOX-17
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Tochio, N., Miyamoto, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yum: Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Tochio, N., Miyamoto, K., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yun: Solution structure of the SH3 domain of human Nostrin
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Tochio, N., Miyamoto, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuo: Solution structure of the SH3 domain of mouse RUN and TBC1 domain containing 3
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Tochio, N., Miyamoto, K., Saito, K., Sasagawa, A., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yup: Solution structure of the second SH3 domain of human Vinexin
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Tochio, N., Miyamoto, K., Saito, K., Sasagawa, A., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuq: Solution structure of the SH3 domain of human Tyrosine-protein kinase ITK/TSK
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Miyamoto, K., Tochio, N., Sato, M., Koshiba, S., Harada, T., Watanabe, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yur: Solution structure of the Ring finger of human Retinoblastoma-binding protein 6
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Miyamoto, K., Tochio, N., Tomizawa, T., Koshiba, S., Harada, T., Watanabe, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yus: Solution structure of the SANT domain of human SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Tochio, N., Koshiba, S., Satio, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yut: Crystal Structure of Putative Short-Chain Oxidoreductase TTHB094 from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-06
Authors: Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuu: Solution structure of the first Phorbol esters/diacylglycerol binding domain of human Protein kinase C, delta
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Abe, H., Miyamoto, K., Tochio, N., Saito, K., Sasagawa, A., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuv: Solution Structure of 2nd Immunoglobulin Domain of Slow Type Myosin-Binding Protein C
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Niraula, T.N., Tochio, N., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuw: Solution Structure of 2nd Fibronectin Domain of Slow Type Myosin-Binding Protein C
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Niraula, T.N., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yux: Solution Structure of 3rd Fibronectin type three Domain of slow type Myosin-Binding Protein C
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Niraula, T.N., Tochio, N., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuy: Solution Structure of PDZ domain of Rho GTPase Activating Protein 21
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Niraula, T.N., Yoneyama, M., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yuz: Solution Structure of 4th Immunoglobulin Domain of Slow Type Myosin-Binding Protein C
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-06
Authors: Niraula, T.N., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yv0: Structural and Thermodynamic Analyses of E. coli ribonuclease HI Variant with Quintuple Thermostabilizing Mutations
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2007-04-06
Authors: Haruki, M., Motegi, T., Tadokoro, T., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2yv1: Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Methanocaldococcus jannaschii DSM 2661
Classification: LIGASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-04-06
Authors: Niwa, H., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yv2: Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Aeropyrum pernix K1
Classification: LIGASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-06
Authors: Niwa, H., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yv3: Crystal Structure of Aspartate Semialdehyde Dehydrogenase from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2007-04-07
Authors: Kagawa, W., Fujikawa, N., Kurumizaka, H., Bessho, Y., Ellis, M.J., Antonyuk, S.V., Strange, R.W., Hasnain, S.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yv4: Crystal Structure of C-terminal Sua5 Domain from Pyrococcus horikoshii Hypothetical Sua5 Protein PH0435
Classification: RNA BINDING PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-04-09
Authors: Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yv5: Crystal structure of Yjeq from Aquifex aeolicus
Classification: HYDROLASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-04-09
Authors: Wang, H., Kaminishi, T., Hanawa-Suetsugu, K., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yv6: Crystal structure of human Bcl-2 family protein Bak
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-04-09
Authors: Wang, H., Kishishita, S., Murayama, K., Takemoto, C., Terada, T., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yv7: Crystal structure of the CLIC homolog from drosophila melanogaster
Classification: METAL TRANSPORT
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-04-10
Authors: Harrop, S.J., Littler, D.R., Curmi, P.M.G.
PDB entry 2yv8: Crystal structure of N-terminal domain of human galectin-8
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2007-04-10
Authors: Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yv9: Crystal structure of the CLIC homologue EXC-4 from c. elegans
Classification: METAL TRANSPORT
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-04-10
Authors: Harrop, S.J., Littler, D.R., Curmi, P.M.G.
PDB entry 2yva: Crystal structure of Escherichia coli DiaA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2007-04-10
Authors: Keyamura, K., Fujikawa, N., Ishida, T., Ozaki, S., Suetsugu, M., Kagawa, W., Yokoyama, S., Kurumizaka, H., Katayama, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvb: High resolution X-ray crystal structure of Tetragonal Hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2007-04-10
Authors: Naresh, M.D., Jaimohan, S.M., Kumar, V.V., Mandal, A.B.
PDB entry 2yvc: Crystal structure of the Radixin FERM domain complexed with the NEP cytoplasmic tail
Classification: CELL ADHESION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2007-04-11
Authors: Terawaki, S., Kitano, K., Hakoshima, T.
PDB entry 2yve: Crystal structure of the methylene blue-bound form of the multi-drug binding transcriptional repressor CgmR
Classification: TRANSCRIPTION
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2007-04-12
Authors: Itou, H., Shirakihara, Y., Tanaka, I.
PDB entry 2yvf: Crystal structure of ferredoxin reductase BPHA4 (hydroquinone)
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-04-12
Authors: Senda, T., Senda, M.
PDB entry 2yvg: crystal structure of ferredoxin reductase, BPHA4 (blue-semiquinone)
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-04-12
Authors: Senda, T., Senda, M.
PDB entry 2yvh: Crystal structure of the operator-binding form of the multi-drug binding transcriptional repressor CgmR
Classification: TRANSCRIPTION/DNA
Source organism: Corynebacterium glutamicum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-04-12
Authors: Itou, H., Shirakihara, Y., Tanaka, I.
PDB entry 2yvi: Crystal structure of a death domain of human ankryn protein
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2007-04-12
Authors: Ihsanawati, Bessho, Y., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvj: Crystal structure of the ferredoxin-ferredoxin reductase (BPHA3-BPHA4)complex
Classification: OXIDOREDUCTASE/ELECTRON TRANSPORT
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-04-12
Authors: Senda, T., Senda, M.
PDB entry 2yvk: Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis
Classification: ISOMERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2007-04-13
Authors: Tamura, H., Inoue, T., Kai, Y., Matsumura, H.
PDB entry 2yvl: Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-13
Authors: Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvm: Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-04-13
Authors: Wakamatsu, T., Nakagawa, N., Kuramitsu, S., Yokoyama, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvn: Crystal structure of NDX2 from thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2007-04-13
Authors: Wakamatsu, T., Nakagawa, N., Kuramitsu, S., Yokoyama, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvo: Crystal structure of NDX2 in complex with MG2+ and AMP from thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2007-04-13
Authors: Wakamatsu, T., Nakagawa, N., Kuramitsu, S., Yokoyama, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvp: Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2007-04-13
Authors: Wakamatsu, T., Nakagawa, N., Kuramitsu, S., Yokoyama, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvq: Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2007-04-13
Authors: Xie, Y., Ihsanawati, Kishishita, S., Murayama, K., Takemoto, C., Shirozu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvr: Crystal structure of MS1043
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-04-13
Authors: Wang, H., Kishishita, S., Murayama, K., Takemoto, C., Terada, T., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvs: Crystal structure of glycolate oxidase subunit GlcE from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-04-15
Authors: Yoneda, K., Sakuraba, H., Kuramitsu, S., Ohshima, T.
PDB entry 2yvt: Crystal structure of aq_1956
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-04-15
Authors: Ishii, R., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvu: Crystal structure of APE1195
Classification: TRANSFERASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-04-15
Authors: Ishii, R., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvv: Crystal structure of hyluranidase complexed with lactose at 2.6 A resolution reveals three specific sugar recognition sites
Classification: LYASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2007-04-16
Authors: Mishra, P., Prem Kumar, R., Singh, N., Sharma, S., Kaur, P., Perbandt, M., Betzel, C., Bhakuni, V., Singh, T.P.
PDB entry 2yvw: Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Aquifex aeolicus VF5
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2007-04-16
Authors: Kitamuta, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yvx: Crystal structure of magnesium transporter MgtE
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2007-04-18
Authors: Hattori, M., Tanaka, Y., Fukai, S., Ishitani, R., Nureki, O.
PDB entry 2yvy: Crystal structure of magnesium transporter MgtE cytosolic domain, Mg2+ bound form
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-04-18
Authors: Hattori, M., Tanaka, Y., Fukai, S., Ishitani, R., Nureki, O.
PDB entry 2yvz: Crystal structure of magnesium transporter MgtE cytosolic domain, Mg2+-free form
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2007-04-18
Authors: Hattori, M., Tanaka, Y., Fukai, S., Ishitani, R., Nureki, O.
PDB entry 2yw0: Crystal structure of hyluranidase trimer at 2.6 A resolution
Classification: LYASE
Source organism: Streptococcus pyogenes serotype M1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2007-04-18
Authors: Prem Kumar, R., Mishra, P., Singh, N., Perbandt, M., Kaur, P., Sharma, S., Betzel, C., Bhakuni, V., Singh, T.P.
PDB entry 2yw2: Crystal structure of GAR synthetase from Aquifex aeolicus in complex with ATP
Classification: LIGASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-04-19
Authors: Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yw3: Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1
Classification: LYASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2007-04-19
Authors: Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yw4: Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1
Classification: LYASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2007-04-19
Authors: Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yw5: Solution structure of the bromodomain from human bromodomain containing protein 3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-04-19
Authors: Furue, M., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yw6: Structural studies of N terminal deletion mutant of Dps from Mycobacterium smegmatis
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2007-04-19
Authors: Roy, S., Saraswathi, R., Gupta, S., Sekar, K., Chatterji, D., Vijayan, M.
PDB entry 2yw7: Crystal structure of C-terminal deletion mutant of Mycobacterium smegmatis Dps
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2007-04-19
Authors: Roy, S., Saraswathi, R., Gupta, S., Sekar, K., Chatterji, D., Vijayan, M.
PDB entry 2yw8: Crystal structure of human RUN and FYVE domain-containing protein
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2007-04-20
Authors: Wang, H., Kishishita, S., Murayama, K., Takemoto, C., Terada, T., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yw9: Crystal structure of TT0143 from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-04-20
Authors: Miyano, M., Ago, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywa: Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2007-04-20
Authors: Kitamura, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywb: Crystal structure of GMP synthetase from Thermus thermophilus
Classification: LIGASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-04-20
Authors: Baba, S., Kanagawa, M., Yanai, H., Ishii, T., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywc: Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP
Classification: LIGASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-20
Authors: Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywd: Crystal structure of glutamine amidotransferase
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-04-20
Authors: Manzoku, M., Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywe: Crystal structure of LepA from Aquifex aeolicus
Classification: TRANSLATION
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2007-04-20
Authors: Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywf: Crystal structure of GMPPNP-bound LepA from Aquifex aeolicus
Classification: TRANSLATION
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2007-04-20
Authors: Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywg: Crystal structure of GTP-bound LepA from Aquifex aeolicus
Classification: TRANSLATION
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2007-04-20
Authors: Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywh: Crystal structure of GDP-bound LepA from Aquifex aeolicus
Classification: TRANSLATION
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2007-04-20
Authors: Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywi: Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-04-20
Authors: Manzoku, M., Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywj: Crystal structure of uncharacterized conserved protein from Methanocaldococcus jannaschii
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-04-20
Authors: Manzoku, M., Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywk: Crystal structure of RRM-domain derived from human putative RNA-binding protein 11
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2007-04-20
Authors: Kawazoe, M., Takemoto, C., Kaminishi, T., Uchikubo-Kamo, T., Nishino, A., Morita, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywl: Crystal structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-04-20
Authors: Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywm: Crystal structure of glutaredoxin-like protein from Aquifex aeolicus
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-04-20
Authors: Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywn: Crystal structure of peroxiredoxin-like protein from Sulfolobus tokodaii
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-04-20
Authors: Ebihara, A., Manzoku, M., Fujimoto, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywo: Crystal structure of reduced thioredoxin-like protein from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-04-20
Authors: Ebihara, A., Manzoku, M., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywp: Crystal Structure of CHK1 with a Urea Inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2007-04-21
Authors: Park, C.
PDB entry 2ywq: Crystal structure of Thermus thermophilus Protein Y N-terminal domain
Classification: RIBOSOMAL PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2007-04-21
Authors: Kawazoe, M., Takemoto, C., Kaminishi, T., Tatsuguchi, A., Saito, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywr: Crystal structure of GAR transformylase from Aquifex aeolicus
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2007-04-23
Authors: Kanagawa, M., Baba, S., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywv: Crystal structure of SAICAR synthetase from Geobacillus kaustophilus
Classification: LIGASE
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2007-04-23
Authors: Kanagawa, M., Baba, S., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yww: Crystal structure of aspartate carbamoyltransferase regulatory chain from Methanocaldococcus jannaschii
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-04-23
Authors: Kanagawa, M., Baba, S., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywx: Crystal structure of phosphoribosylaminoimidazole carboxylase catalytic subunit from Methanocaldococcus jannaschii
Classification: LYASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2007-04-23
Authors: Kanagawa, M., Baba, S., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ywy: Structure of new antigen receptor variable domain from sharks
Classification: IMMUNE SYSTEM
Source organism: Orectolobus maculatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2007-04-23
Authors: Streltsov, V.A.
PDB entry 2ywz: Structure of new antigen receptor variable domain from sharks
Classification: IMMUNE SYSTEM
Source organism: Orectolobus maculatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2007-04-23
Authors: Streltsov, V.A.
PDB entry 2yx0: Crystal structure of P. horikoshii TYW1
Classification: METAL BINDING PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2007-04-23
Authors: Goto-Ito, S., Ishii, R., Ito, T., Shibata, R., Fusatomi, E., Sekine, S., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yx1: Crystal structure of M.jannaschii tRNA m1G37 methyltransferase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-23
Authors: Goto-Ito, S., Ito, T., Ishii, R., Bessho, Y., Yokoyama, S.
PDB entry 2yx2: Crystal structure of cloned trimeric hyluranidase from streptococcus pyogenes at 2.8 A resolution
Classification: LYASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2007-04-23
Authors: Mishra, P., Prem Kumar, R., Bhakuni, V., Singh, N., Sharma, S., Kaur, P., Perbandt, M., Betzel, C., Singh, T.P.
PDB entry 2yx4: Crystal Structure of T134A of ST1022 from Sulfolobus tokodaii
Classification: TRANSCRIPTION REGULATOR
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-04-24
Authors: Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yx5: Crystal Structure of Methanocaldococcus jannaschii PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-04-24
Authors: Kanagawa, M., Baba, S., Agari, Y., Chen, L.Q., Fu, Z.-Q., Chrzas, J., Wang, B.C., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yx6: Crystal structure of PH0822
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-04-24
Authors: Hosaka, T., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yx7: Crystals structure of T132A mutant of St1022 from sulfolobus tokodaii 7
Classification: TRANSCRIPTION
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2007-04-24
Authors: Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yx8: Crystal structure of the extracellular domain of human RAMP1
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2007-04-24
Authors: Kusano, S., Kukimoto-Niino, M., Shirouzu, M., Shindo, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yx9: Crystal structure of D298K copper amine oxidase from Arthrobacter globiformis
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2007-04-25
Authors: Murakawa, T., Okajima, T., Yamaguchi, H., Tanizawa, K.
PDB entry 2yxb: Crystal structure of the methylmalonyl-CoA mutase alpha-subunit from Aeropyrum pernix
Classification: ISOMERASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-04-25
Authors: Handa, N., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxc: The H25M mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2007-04-26
Authors: Higuchi, Y., Komori, H.
PDB entry 2yxd: Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2007-04-26
Authors: Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxe: Crystal structure of L-isoaspartyl protein carboxyl methyltranferase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-04-26
Authors: Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxf: The high resolution crystal structure of beta2-microglobulin under physiological conditions
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2007-04-26
Authors: Iwata, K., Matsuura, T., Nakagawa, A., Goto, Y.
PDB entry 2yxg: Crystal structure of Dihyrodipicolinate Synthase (dapA)
Classification: LYASE
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-26
Authors: Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxh: Crystal structure of mazG-related protein from Thermotoga maritima
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-04-26
Authors: Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxj: Crystal structure of Bcl-xL in complex with ABT-737
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-26
Authors: Czabotar, P.E., Lee, E.F., Smith, B.J., Deshayes, K., Zobel, K., Fairlie, W.D., Colman, P.M.
PDB entry 2yxl: Crystal Structure of PH0851
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2007-04-26
Authors: Hikida, Y., Kuratani, M., Bessho, Y., Ishii, R., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxm: Crystal structure of I-set domain of human Myosin Binding ProteinC
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2007-04-26
Authors: Kishishita, S., Ohsawa, N., Murayama, K., Chen, L., Liu, Z., Terada, T., Shirouzu, M., Wang, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxn: Structual basis of azido-tyrosine recognition by engineered bacterial Tyrosyl-tRNA synthetase
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-04-26
Authors: Oki, K., Kobayashi, T., Sakamoto, K., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxo: Histidinol Phosphate Phosphatase complexed with Sulfate
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-04-26
Authors: Omi, R.
PDB entry 2yxp: The Effect of Deuteration on Protein Structure A High Resolution Comparison of Hydrogenous and Perdeuterated Haloalkane Dehalogenase
Classification: HYDROLASE
Source organism: Xanthobacter autotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2007-04-27
Authors: Liu, X., Hanson, L., Langan, P., Viola, R.E.
PDB entry 2yxq: The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal
Classification: PROTEIN TRANSPORT
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2007-04-27
Authors: Li, W., Schulman, S.
PDB entry 2yxr: The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal
Classification: PROTEIN TRANSPORT
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2007-04-27
Authors: Li, W., Schulman, S.
PDB entry 2yxs: Crystal Structure of N-terminal domain of human galectin-8 with D-lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2007-04-27
Authors: Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxt: Human Pyridoxal Kinase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-04-27
Authors: Safo, M.K., Musayev, F.N., Ko, T.P., Schirch, V.
PDB entry 2yxu: Human Pyridoxal Kinase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-27
Authors: Safo, M.K., Musayev, F.N., Ko, T.P., Schirch, V.
PDB entry 2yxv: The deletion mutant of Multicopper Oxidase CueO
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2007-04-27
Authors: Higuchi, Y., Komori, H.
PDB entry 2yxw: The deletion mutant of Multicopper Oxidase CueO
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2007-04-27
Authors: Higuchi, Y., Komori, H.
PDB entry 2yxx: Crystal structure analysis of Diaminopimelate decarboxylate (lysA)
Classification: LYASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2007-04-27
Authors: Nakamura, Y., Bessho, Y., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxy: Crystarl structure of Hypothetical conserved protein, GK0453
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-04-27
Authors: Nakamu, Y., Bessho, Y., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yxz: Crystal structure of tt0281 from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-04-27
Authors: Goto, M.
PDB entry 2yy0: Crystal Structure of MS0802, c-Myc-1 binding protein domain from Homo sapiens
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2007-04-27
Authors: Xie, Y., Wang, H., Ihsanawati, K.T., Kishishita, S., Takemoto, C., Shirozu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2yy1: Crystal structure of N-terminal domain of human galectin-9 containing L-acetyllactosamine
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2007-04-27
Authors: Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)