LiteFold/PDB huggingface dataset:
PDB entry 5yoj: Structure of A17 HIV-1 Protease in Complex with Inhibitor KNI-1657
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-10-29
Authors: Adachi, M., Hidaka, K., Kuroki, R., Kiso, Y.
PDB entry 5yok: Structure of HIV-1 Protease in Complex with Inhibitor KNI-1657
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 0.85 Å
Deposited: 2017-10-29
Authors: Adachi, M., Hidaka, K., Kuroki, R., Kiso, Y.
PDB entry 5yol: Crystal structure of octameric form of Nucleoside diphosphate kinase from Acinetobacter baumannii at 2.2 A resolution
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-10-29
Authors: Singh, P.K., Sikarwar, J., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5yoq: Human serum albumin complexed with sodium 4-phenylbutyrate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2017-10-30
Authors: Kawai, A., Otagiri, M.
PDB entry 5yot: Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose
Classification: HYDROLASE
Source organism: Aspergillus oryzae RIB40
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2017-10-31
Authors: Matsuzawa, T., Watanabe, M., Nakamichi, Y., Yaoi, K.
PDB entry 5you: Crystal structure of BRD4-BD1 bound with hjp64
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.503 Å
Deposited: 2017-10-31
Authors: Bing, X., Jianping, H., Yanlian, L., Danyan, C.
PDB entry 5yov: Crystal structure of BRD4-BD1 bound with hjp126
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.451 Å
Deposited: 2017-10-31
Authors: Xiong, B., Hu, J., Li, Y., Cao, D.
PDB entry 5yow: The post-fusion structure of the Heartland virus Gc glycoprotein
Classification: VIRAL PROTEIN
Source organism: Heartland virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-10-31
Authors: Wu, Y., Gao, F., Qi, J.X., Chai, Y.
PDB entry 5yox: HD domain-containing protein YGK1(YGL101W)
Classification: LYASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2017-10-31
Authors: Yang, J., Wang, F., Gao, Z., Zhou, K., Liu, Q.
PDB entry 5yoy: Crystal structure of the human tumor necrosis factor in complex with golimumab Fv
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.727 Å
Deposited: 2017-10-31
Authors: Ono, M., Horita, S., Sato, Y., Nomura, Y., Iwata, S., Nomura, N.
PDB entry 5yoz: Solution structure of truncated Rab5a from Leishmania donovani
Classification: ENDOCYTOSIS
Source organism: Leishmania donovani
Experimental method: SOLUTION NMR
Deposited: 2017-10-31
Authors: Maheshwari, D., Yadav, R., Mukhopadhyay, A., Arora, A.
PDB entry 5yp1: Crystal structure of dipeptidyl peptidase IV (DPP IV) from Pseudoxanthomonas mexicana WO24
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2017-11-01
Authors: Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
PDB entry 5yp2: Crystal structure of dipeptidyl peptidase IV (DPP IV) with DPP4 inhibitor from Pseudoxanthomonas mexicana WO24
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2017-11-01
Authors: Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
PDB entry 5yp3: Crystal structure of dipeptidyl peptidase IV (DPP IV) with Ile-Pro from Pseudoxanthomonas mexicana
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2017-11-01
Authors: Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
PDB entry 5yp4: Crystal structure of dipeptidyl peptidase IV (DPP IV) with Lys-Pro from Pseudoxanthomonas mexicana WO24
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-11-01
Authors: Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
PDB entry 5yp5: Crystal structure of RORgamma complexed with SRC2 and compound 5d
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2017-11-01
Authors: Gao, M., Cai, W., Chunwa, C.
PDB entry 5yp6: RORgamma (263-509) complexed with SRC2 and Compound 6
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-11-01
Authors: Gao, M., Cai, W.
PDB entry 5yp7: p62/SQSTM1 ZZ domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.424 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5yp8: p62/SQSTM1 ZZ domain with Arg-peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.448 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5ypa: p62/SQSTM1 ZZ domain with Lys-peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.502 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5ypb: p62/SQSTM1 ZZ domain with His-peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5ypc: p62/SQSTM1 ZZ domain with Phe-peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.962 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5ypd: Mycobacterium Tuberculosis Methionine aminopeptidase type 1c (C105N mutant) in complex with Methionine
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2017-11-01
Authors: Sandeep, C.B., Addlagatta, A.
PDB entry 5ype: p62/SQSTM1 ZZ domain with Tyr-peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.851 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5ypf: p62/SQSTM1 ZZ domain with Trp-peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.951 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5ypg: p62/SQSTM1 ZZ domain with Leu-peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.199 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5yph: p62/SQSTM1 ZZ domain with Ile-peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.629 Å
Deposited: 2017-11-01
Authors: Kwon, D.H., Kim, L., Song, H.K.
PDB entry 5ypi: Crystal structure of NDM-1 bound to hydrolyzed imipenem representing an EI1 complex
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-11-01
Authors: Feng, H., Wang, D., Liu, W.
PDB entry 5ypj: Mycobacterium Tuberculosis Methionine aminopeptidase type 1c (C105N mutant).
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2017-11-01
Authors: Sandeep, C.B., Addlagatta, A.
PDB entry 5ypk: Crystal structure of NDM-1 bound to hydrolyzed imipenem representing an EI2 complex
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-11-02
Authors: Feng, H., Wang, D., Liu, W.
PDB entry 5ypl: Crystal structure of NDM-1 bound to hydrolyzed imipenem representing an EP complex
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-11-02
Authors: Feng, H., Wang, D., Liu, W.
PDB entry 5ypm: Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI1 complex
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2017-11-02
Authors: Feng, H., Wang, D., Liu, W.
PDB entry 5ypn: Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI2 complex
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2017-11-02
Authors: Feng, H., Liu, W., Wang, D.
PDB entry 5ypo: Crystal structure of PSD-95 GK domain in complex with phospho-SAPAP peptide
Classification: PROTEIN BINDING
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2017-11-02
Authors: Zhu, J., Zhou, Q., Shang, Y., Weng, Z., Zhang, R., Zhang, M.
PDB entry 5ypp: Crystal structure of IlvN.Val-1a
Classification: TRANSFERASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-11-02
Authors: Sarma, S.P., Bansal, A., Schindelin, H., Demeler, B.
PDB entry 5ypq: Crystal structure of sulfated dehydroquinate dehydratase from Acinetobacter baumannii at 2.65 A resolution
Classification: LYASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2017-11-02
Authors: Iqbal, N., Kaur, P., Sharma, S., Singh, T.
PDB entry 5ypr: Crystal Structure of PSD-95 SH3-GK domain in complex with a synthesized inhibitor
Classification: PROTEIN BINDING
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.349 Å
Deposited: 2017-11-02
Authors: Zhu, J., Zhou, Q., Shang, Y., Weng, Z., Zhu, R., Zhang, M.
PDB entry 5yps: The structural basis of histone chaperoneVps75
Classification: CHAPERONE
Source organism: Pneumocystis carinii B80
Experimental method: X-RAY DIFFRACTION
Resolution: 2.097 Å
Deposited: 2017-11-03
Authors: Chen, Y., Zhang, Y., Dou, Y., Wang, M., Xu, S., Jiang, H., Limper, A., Su, D.
PDB entry 5ypt: Crystal structure of Marchantia paleacea chalone synthase like 1 (CHSL1)
Classification: TRANSFERASE
Source organism: Marchantia polymorpha
Experimental method: X-RAY DIFFRACTION
Resolution: 2.394 Å
Deposited: 2017-11-03
Authors: Lou, H.X., Yu, H.
PDB entry 5ypu: Crystal structure of an actin monomer in complex with the nucleator Cordon-Bleu MET72NLE WH2-motif peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-11-03
Authors: Scipion, C.P.M., Wongsantichon, J., Ferrer, F.J., Yuen, T.Y., Robinson, R.C.
PDB entry 5ypv: Crystal structure of FabD from Acinetobacter baumannii
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2017-11-03
Authors: Lee, W.C., Kim, Y.
PDB entry 5ypw: Crystal structure of IlvN.Val-1b
Classification: TRANSFERASE
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-11-03
Authors: Sarma, S.P., Bansal, A., Schindelin, H., Demeler, B.
PDB entry 5ypx: Crystal structure of calaxin with magnesium
Classification: METAL BINDING PROTEIN
Source organism: Ciona intestinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2017-11-04
Authors: Shojima, T., Hou, F., Takahashi, Y., Okai, M., Mizuno, K., Inaba, K., Miyakawa, T., Tanokura, M.
PDB entry 5ypy: Crystal structure of IlvN. Val-1c
Classification: TRANSFERASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.966 Å
Deposited: 2017-11-04
Authors: Sarma, S.P., Bansal, A., Schindelin, H., Demeler, B.
PDB entry 5ypz: Crystal structure of minor pilin CofB from CFA/III complexed with N-terminal peptide fragment of CofJ
Classification: CELL ADHESION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.521 Å
Deposited: 2017-11-04
Authors: Oki, H., Kawahara, K., Maruno, T., Imai, T., Muroga, Y., Fukakusa, S., Iwashita, T., Kobayashi, Y., Matsuda, S., Kodama, T., Iida, T., Yoshida, T., Ohkubo, T., Nakamura, S.
PDB entry 5yq0: Crystal structure of secreted protein CofJ from ETEC.
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2017-11-04
Authors: Oki, H., Kawahara, K., Maruno, T., Imai, T., Muroga, Y., Fukakusa, S., Iwashita, T., Kobayashi, Y., Matsuda, S., Kodama, T., Iida, T., Yoshida, T., Ohkubo, T., Nakamura, S.
PDB entry 5yq1: Crystal structure of E.coli aminopeptidase N in complex with O-Methyl-L-tyrosine
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2017-11-04
Authors: Marapaka, A.K., Ganji, R.J., Reddi, R., Addlagatta, A.
PDB entry 5yq2: Crystal structure of E.coli aminopeptidase N in complex with Puromycin aminonucleoside
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-11-04
Authors: Marapaka, A.K., Ganji, R.J., Reddi, R., Addlagatta, A.
PDB entry 5yq3: Solution NMR Structure and Backbone Dynamics of the Partially Disordered Arabidopsis thaliana Phloem Protein 16-1, A Putative mRNA Transporter
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2017-11-04
Authors: Bhuyan, A.K., Sashi, P.
PDB entry 5yq4: Crystal structure of kelch domain of KLHL20
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2017-11-05
Authors: Yeh, M.C., Ho, M.C.
PDB entry 5yq5: Crystal structure of human osteomodulin
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2017-11-05
Authors: Caaveiro, J.M.M., Tashima, T., Tsumoto, K.
PDB entry 5yq7: Cryo-EM structure of the RC-LH core complex from Roseiflexus castenholzii
Classification: PHOTOSYNTHESIS
Source organism: Roseiflexus castenholzii
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2017-11-05
Authors: Shi, Y., Xin, Y.Y., Niu, T.X., Wang, Q.Q., Niu, W.Q., Huang, X.J., Ding, W., Blankenship, R.E., Xu, X.L., Sun, F.
PDB entry 5yq8: Crystal structure of retroviral protease-like domain of Ddi1 from Leishmania major
Classification: HYDROLASE
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2017-11-06
Authors: Suguna, K., Kumar, S.
PDB entry 5yqa: The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris (strain HaA2)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2017-11-06
Authors: Zhou, W., Zhang, T., Qiao, R., Bell, S., Coleman, T.
PDB entry 5yqb: Crystal structure of E.coli aminopeptidase N in complex with Puromycin
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2017-11-06
Authors: Marapaka, A.K., Ganji, R.J., Reddi, R., Addlagatta, A.
PDB entry 5yqg: The structure of 14-3-3 and pNumb peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-11-06
Authors: Chen, X., Liu, Z., Wen, W.
PDB entry 5yqh: The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris (strain HaA2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-11-06
Authors: Zhou, W., Zhang, T., Qiao, R., Bell, S., Coleman, T.
PDB entry 5yqi: Crystal structure of the first StARkin domain of Lam2
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-11-06
Authors: Tong, J., Im, Y.J.
PDB entry 5yqj: Crystal structure of the first StARkin domain of Lam4
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-11-06
Authors: Im, Y.J., Tong, J.S.
PDB entry 5yql: Crystal structure of Sirt2 in complex with selective inhibitor A2I
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2017-11-07
Authors: Wang, H., Yu, Y., Li, G., Chen, Q.
PDB entry 5yqm: Crystal structure of Sirt2 in complex with selective inhibitor A29
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.735 Å
Deposited: 2017-11-07
Authors: Wang, H., Yu, Y., Li, G., chen, Q.
PDB entry 5yqn: Crystal structure of Sirt2 in complex with selective inhibitor L55
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-11-07
Authors: Wang, H., Yu, Y., Li, G., Chen, Q.
PDB entry 5yqo: Crystal structure of Sirt2 in complex with selective inhibitor L5C
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.483 Å
Deposited: 2017-11-07
Authors: Wang, H., Yu, Y., Li, G., Chen, Q.
PDB entry 5yqp: Crystal structure of the second StARkin domain of Lam4
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-11-07
Authors: Tong, J., Manik, K.M., IM, Y.J.
PDB entry 5yqq: Crystal structure of a domain-swapped dimer of the second StARkin domain of Lam2
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-11-07
Authors: Tong, J., Im, Y.J.
PDB entry 5yqr: Crystal structure of the PH-like domain of Lam6
Classification: TRANSPORT PROTEIN
Source organism: Enterobacteria phage T4; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.402 Å
Deposited: 2017-11-07
Authors: Tong, J., Im, Y.J.
PDB entry 5yqs: Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose
Classification: HYDROLASE
Source organism: Aspergillus oryzae RIB40
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-11-07
Authors: Yaoi, K., Matsuzawa, T., Watanabe, M., Nakamichi, Y.
PDB entry 5yqt: Crystal Structure of the L74F/M78V/I80V/L114F mutant of LEH complexed with cyclopentene oxide
Classification: HYDROLASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-11-07
Authors: Kong, X.D., Sun, Z.T., Wu, L., Reetz, M.T., Zhou, J.H., Xu, J.H.
PDB entry 5yqw: Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria
Classification: PROTEIN BINDING
Source organism: Vibrio harveyi (strain 1DA3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2017-11-08
Authors: Suginta, W., Sritho, N., Ranok, A., Kitaoku, Y., Bulmer, D.M., van den Berg, B., Fukamizo, T.
PDB entry 5yqx: Crystal Structure Analysis of the BRD4
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2017-11-08
Authors: Xue, X., Zhang, Y., Wang, C., Song, M.
PDB entry 5yqz: Structure of the glucagon receptor in complex with a glucagon analogue
Classification: SIGNALING PROTEIN/HYDROLASE
Source organism: Enterobacteria phage T4; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-11-08
Authors: Zhang, H., Qiao, A., Yang, L., VAN EPS, N., Frederiksen, K., Yang, D., Dai, A., Cai, X., Zhang, H., Yi, C., Can, C., He, L., Yang, H., Lau, J., Ernst, O., Hanson, M., Stevens, R., Wang, M., Seedtz-Runge, S., Jiang, H., Zhao, Q., Wu, B.
PDB entry 5yr0: Structure of Beclin1-UVRAG coiled coil domain complex
Classification: ENDOCYTOSIS
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-11-08
Authors: Pan, X., Zhao, Y., He, Y.
PDB entry 5yr1: Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2017-11-08
Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.
PDB entry 5yr2: Structure of cpGFP66BPA
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.799 Å
Deposited: 2017-11-08
Authors: Wang, L., Kang, F., Wang, J.
PDB entry 5yr3: Structure of sfYFP66BPA
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2017-11-08
Authors: Kang, F., Wang, L., Wang, J.
PDB entry 5yr4: Human methionine aminopeptidase type 1b (F309M mutant) in complex with TNP470
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2017-11-08
Authors: Arya, T., Pillalamarri, V., Addlagatta, A.
PDB entry 5yr5: Human methionine aminopeptidase type 1b (F309L mutant) in complex with Ovalicin
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-11-08
Authors: Pillalamarri, V., Arya, T., Addlagatta, A.
PDB entry 5yr6: Human methionine aminopeptidase type 1b (F309L mutant) in complex with TNP470
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-11-08
Authors: Pillalamarri, V., Arya, T., Addlagatta, A.
PDB entry 5yr7: Human methionine aminopeptidase type 1b (F309L mutant)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2017-11-08
Authors: Pillalamarri, V., Arya, T., Addlagatta, A.
PDB entry 5yr9: Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C Mutant
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-11-08
Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.
PDB entry 5yra: Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2017-11-09
Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.
PDB entry 5yrb: Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2017-11-09
Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.
PDB entry 5yrc: Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C Mutant
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2017-11-09
Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.
PDB entry 5yrd: Crystal Structure of Oxidized Cypovirus Polyhedra R13A/S193C/A194C Mutant
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-11-09
Authors: Negishi, H., Abe, S., Yamashita, K., Hirata, K., Niwase, K., Boudes, M., Coulibaly, F., Mori, H., Ueno, T.
PDB entry 5yre: Crystal structure of PPL3A
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yrf: PPL3A-trehalose complex
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yrg: PPL3A-isomaltose complex
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yrh: Crystal structure of PPL3B
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yri: PPL3B-trehalose complex
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yrj: PPL3B-isomaltose complex
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yrk: Crystal structure of PPL3C
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yrl: PPL3C-trehalose complex
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yrm: PPL3C-isomaltose complex
Classification: SUGAR BINDING PROTEIN
Source organism: Pteria penguin
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-11-09
Authors: Nakae, S., Shionyu, M., Ogawa, T., Shirai, T.
PDB entry 5yrn: Structure of RIP2 CARD domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2017-11-09
Authors: Wu, B., Gong, Q.
PDB entry 5yro: RanL182A in complex with RanBP1-CRM1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.396 Å
Deposited: 2017-11-09
Authors: Sun, Q., Zhang, Y.
PDB entry 5yrp: Crystal structure of the EAL domain of Mycobacterium smegmatis DcpA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2017-11-09
Authors: Chen, H.J., li, N., Luo, Y., Jiang, Y.L., Zhou, C.Z., Chen, Y., Li, Q.
PDB entry 5yrq: Crystal structure of Rad5 and Rev1
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2017-11-09
Authors: Chen, Z.C., Zhou, C.Y.
PDB entry 5yrr: The crystal structure of Phosphopantetheine adenylyltransferase from Acinetobacter baumannii with Coenzyme A at 2.88 A resolution
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2017-11-09
Authors: Bairagya, H.R., Gupta, A., Iqbal, N., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5yrs: X-ray Snapshot of HIV-1 Protease in Action: Observation of Tetrahedral Intermediate and Its SIHB with Catalytic Aspartate
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2017-11-10
Authors: Das, A., Mahale, S., Prashar, V., Bihani, S., Ferrer, J.-L., Hosur, M.V.
PDB entry 5yrt: Diol dehydratase, AdoCbl/substrate-free, anaerobically-prepared crystal
Classification: LYASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-11-10
Authors: Shibata, N.
PDB entry 5yrv: Diol dehydratase, AdoCbl/1,2-propanediol, anaerobically-prepared crystal
Classification: LYASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2017-11-10
Authors: Shibata, N.
PDB entry 5yrx: Crystal structure of a hypothetical protein Rv3716c from Mycobacterium tuberculosis
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-11-10
Authors: Deka, G., Gopalan, A., Prabhavathi, M., Savithri, H.S., Raja, A., Murthy, M.R.N.
PDB entry 5yry: Crystal structure of C-terminal redox domain of APR1 from Arabidopsis thaliana
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.698 Å
Deposited: 2017-11-11
Authors: Hsu, C.H.
PDB entry 5yrz: Toxin-Antitoxin complex from Streptococcus pneumoniae
Classification: ANTITOXIN/HYDROLASE
Source organism: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.304 Å
Deposited: 2017-11-11
Authors: Kang, S.M., Kim, D.H.
PDB entry 5ys0: Crystal structure of the second StARkin domain of Lam2 in complex with ergosterol
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2017-11-11
Authors: Tong, J., Im, Y.J.
PDB entry 5ys1: Crystal structure of Multicopper Oxidase CueO G304K mutant
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2017-11-12
Authors: Wang, H.Q., Liu, X.Q., Zhao, J.T., Yue, Q.X., Yan, Y.H., Dong, Y.H., Fan, Y.L., Tian, J., Wu, N.F., Gong, Y.
PDB entry 5ys2: Structure of the domain IV(D_IV) of Pseudorabies virus glycoprotein B( PRV gB)
Classification: VIRAL PROTEIN
Source organism: Suid alphaherpesvirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.698 Å
Deposited: 2017-11-12
Authors: Hu, X.L., Yang, F.L.
PDB entry 5ys3: 1.8 angstrom crystal structure of Succinate-Acetate Permease from Citrobacter koseri
Classification: TRANSPORT PROTEIN
Source organism: Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.823 Å
Deposited: 2017-11-13
Authors: Qiu, B., Liao, J.
PDB entry 5ys4: Crystal structure of retroviral protease-like domain of Ddi1 from Leishmania major
Classification: HYDROLASE
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-11-13
Authors: Suguna, K., Kumar, S.
PDB entry 5ys5: Crystal structure of Multicopper Oxidase CueO G304K mutant with seven copper ions
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-11-13
Authors: Wang, H.Q., Liu, X.Q., Zhao, J.T., Yue, Q.X., Yan, Y.H., Dong, Y.H., Fan, Y.L., Tian, J., Wu, N.F., Gong, Y.
PDB entry 5ys6: Structure of the ectodomain of pseudorabies virus glycoproten B
Classification: VIRAL PROTEIN
Source organism: Suid alphaherpesvirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2017-11-13
Authors: Hu, X.L., Yang, F.L.
PDB entry 5ys7: Crystal structure of an OspA mutant
Classification: DE NOVO PROTEIN
Source organism: Borreliella burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-11-13
Authors: Takada, S., Makabe, K.
PDB entry 5ys8: 2.8 angstrom crystal structure of Succinate-Acetate Permease from Citrobacter koseri
Classification: TRANSPORT PROTEIN
Source organism: Citrobacter koseri ATCC BAA-895
Experimental method: X-RAY DIFFRACTION
Resolution: 2.798 Å
Deposited: 2017-11-13
Authors: Qiu, B., Liao, J.
PDB entry 5ys9: Crystal structure of acyl-coA oxidase3 from Yarrowia lipolytica
Classification: OXIDOREDUCTASE
Source organism: Yarrowia lipolytica (strain CLIB 122 / E 150)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-11-13
Authors: Kim, S., Kim, K.-J.
PDB entry 5ysb: Crystal structure of beta-1,2-glucooligosaccharide binding protein in ligand-free form
Classification: SUGAR BINDING PROTEIN
Source organism: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-11-13
Authors: Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
PDB entry 5ysc: Crystal Structure of periplasmic Vitamin B12 binding protein BtuF of Vibrio cholerae
Classification: TRANSPORT PROTEIN
Source organism: Vibrio cholerae O395
Experimental method: X-RAY DIFFRACTION
Resolution: 1.673 Å
Deposited: 2017-11-13
Authors: Agarwal, S., Ghosh, B., Dasgupta, J.
PDB entry 5ysd: Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophorotriose
Classification: SUGAR BINDING PROTEIN
Source organism: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-11-14
Authors: Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
PDB entry 5yse: Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophorotetraose
Classification: SUGAR BINDING PROTEIN
Source organism: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-11-14
Authors: Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
PDB entry 5ysf: Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophoropentaose
Classification: SUGAR BINDING PROTEIN
Source organism: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-11-14
Authors: Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
PDB entry 5ysg: X-ray Crystal Structure of Pseudoazurin Met16Gly Variant, Reduced Form.
Classification: ELECTRON TRANSPORT
Source organism: Achromobacter cycloclastes
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-11-14
Authors: Kohei, A., Yamaguchi, T., Kohzuma, T.
PDB entry 5ysh: Diol dehydratase - alpha/T172A mutant complexed with AdoCbl, aerobically-prepared crystal
Classification: LYASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-11-14
Authors: Shibata, N.
PDB entry 5ysi: SdeA mART-C domain EE/AA NCA complex
Classification: HYDROLASE
Source organism: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.546 Å
Deposited: 2017-11-14
Authors: Kim, L., Kwon, D.H., Song, H.K.
PDB entry 5ysj: SdeA mART-C domain WT apo
Classification: HYDROLASE
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.059 Å
Deposited: 2017-11-14
Authors: Kim, L., Kwon, D.H., Song, H.K.
PDB entry 5ysk: SdeA mART-C domain EE/AA apo
Classification: HYDROLASE
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.403 Å
Deposited: 2017-11-14
Authors: Kim, L., Kwon, D.H., Song, H.K.
PDB entry 5ysl: Crystal structure of antibody 1H1 Fab
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-11-14
Authors: Hu, X.L., Yang, F.L.
PDB entry 5ysm: Crystal Structure Analysis of Rif16
Classification: OXIDOREDUCTASE
Source organism: Amycolatopsis mediterranei (strain U-32)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-11-14
Authors: Li, F.W., Qi, F.F., Xiao, Y.L., Zhao, G.P., Li, S.Y.
PDB entry 5ysn: Ethanolamine ammonia-lyase, AdoCbl/substrate-free
Classification: LYASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2017-11-14
Authors: Shibata, N.
PDB entry 5yso: Crystal structure of Estrogen Related Receptor-3 (ERR-gamma) ligand binding domain with DN200434
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.501 Å
Deposited: 2017-11-14
Authors: Cho, S.J., Chin, J.W., Yoon, H.S., Jeon, Y.H., Bae, J.H., Song, J.Y.
PDB entry 5ysp: Pyrophosphate-dependent kinase in the ribokinase family complexed with a pyrophosphate analog and myo-inositol
Classification: TRANSFERASE
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-11-14
Authors: Nagata, R., Fujihashi, M., Miki, K.
PDB entry 5ysq: Sulfate-complex structure of a pyrophosphate-dependent kinase in the ribokinase family provides insight into the donor-binding mode
Classification: TRANSFERASE
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2017-11-14
Authors: Nagata, R., Fujihashi, M., Miki, K.
PDB entry 5ysr: Ethanolamine ammonia-lyase, AdoCbl/2-amino-1-propanol
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2017-11-14
Authors: Shibata, N.
PDB entry 5yss: Crystal structure of aminocaproic acid cyclase in complex with NAD (+)
Classification: OXIDOREDUCTASE
Source organism: Citrobacter freundii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.276 Å
Deposited: 2017-11-15
Authors: Fu, Y., Yeom, S.J., Lee, S.G.
PDB entry 5yst: RanM189D in complex with RanBP1-CRM1
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2017-11-15
Authors: Sun, Q., Zhang, Y.
PDB entry 5ysu: Plumbagin in complex with CRM1-RanM189D-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-11-15
Authors: Sun, Q., Zhang, Y.
PDB entry 5ysw: Crystal Structure Analysis of Rif16 in complex with R-L
Classification: OXIDOREDUCTASE
Source organism: Amycolatopsis mediterranei (strain U-32)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-11-15
Authors: Li, F.W., Qi, F.F., Xiao, Y.L., Zhao, G.P., Li, S.Y.
PDB entry 5ysx: Structure of P domain of GII.2 Noroviruses
Classification: CELL ADHESION
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.202 Å
Deposited: 2017-11-16
Authors: Duan, Z., Ao, Y.
PDB entry 5ysy: Crystal structure of the human vitamin D receptor ligand binding domain complexed with (1R,2R,3R)-5-[(E)-2-{(1R,3aS,7aR)-1-[(R)-6-hydroxy-6-methylheptan-2-yl]-7a-methyl-2,3,3a,6,7,7a-hexahydro-1H-inden-4-yl}vinyl]-2-(3-hydroxypropyl)cyclohex-4-ene-1,3-diol
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-11-16
Authors: Takimoto-Kamimura, M., Kakuda, S.
PDB entry 5ysz: transcriptional regulator CelR-cellobiose complex
Classification: TRANSCRIPTION
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.631 Å
Deposited: 2017-11-16
Authors: Fu, Y., Yeom, S.Y., Lee, D.H., Lee, S.G.
PDB entry 5yt0: Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal translation initiation factor aIF5B
Classification: TRANSLATION
Source organism: Aeropyrum pernix K1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2017-11-16
Authors: Murakami, R., Singh, C.R., Morris, J., Tang, L., Harmon, I., Miyoshi, T., Ito, K., Asano, K., Uchiumi, T.
PDB entry 5yt1: Crystal structrure of near infrared fluoresecent protein mNeptune684
Classification: FLUORESCENT PROTEIN
Source organism: Entacmaea quadricolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-11-16
Authors: Zhang, X.E., Wang, D.B., Yuan, Y., Li, D.F.
PDB entry 5yt2: Crystal structure of the human vitamin D receptor ligand binding domain complexed with (1R,2S,3R)-5-[(E)-2-{(1R,3aS,7aR)-1-[(R)-6-hydroxy-6-methylheptan-2-yl]-7a-methyl-2,3,3a,6,7,7a-hexahydro-1H-inden-4-yl}vinyl]-2-(3-hydroxypropyl)cyclohex-4-ene-1,3-diol
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-11-16
Authors: Takimoto-Kamimura, M., Kakuda, S.
PDB entry 5yt3: Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 S218D and S222D mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-11-16
Authors: Nakae, S., Doko, K., Tada, T., Shirai, T.
PDB entry 5yt4: Galectin-10 variant H53A soaked in glycerol for 5 minutes
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-11-16
Authors: Su, J.
PDB entry 5yt6: Crystal structure of TAX1BP1 UBZ2 in complex with mono-ubiquitin
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.501 Å
Deposited: 2017-11-17
Authors: Pan, L., Hu, S.
PDB entry 5yt7: crystal structure of circularly permutated Azurin 3
Classification: METAL BINDING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2017-11-17
Authors: Chen, H.H., Liu, H.P., Yu, Y.
PDB entry 5yt8: Crystal structure of H5 hemagglutinin with G228S Q226L mutants from A/chicken/Taiwan/0502/2012
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/chicken/Taiwan/0502/2012(H5N2))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.765 Å
Deposited: 2017-11-17
Authors: Lin, T.H., Lee, M.S., Wu, W.G., Liu, J.S.
PDB entry 5yt9: Crystal structure of H5 hemagglutinin G228S mutant from A/chicken/Taiwan/0502/2012
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/chicken/Taiwan/0502/2012(H5N2))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.766 Å
Deposited: 2017-11-17
Authors: Lin, T.H., Lee, M.S., Wu, W.G., Liu, J.S.
PDB entry 5yta: Pig Heart Lactate Dehydrogenase in complex with NADH and Oxamate
Classification: OXIDOREDUCTASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-11-17
Authors: Ho, M.C.
PDB entry 5ytb: RanY197A in complex with RanBP1-CRM1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-11-17
Authors: Sun, Q., Zhang, Y.
PDB entry 5ytc: Large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with the unnatural base M-fC pair with dATP in the active site
Classification: TRANSFERASE/DNA
Source organism: Thermus aquaticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2017-11-17
Authors: Zeng, H., Mondal, M., Song, R.Y., Zhang, J., Xia, B., Yi, C.Q.
PDB entry 5ytd: large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with the natural base pair 5fC:dGTP
Classification: REPLICATION/DNA
Source organism: Thermus aquaticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-11-17
Authors: Zeng, H., Mondal, M., Song, R.Y., Zhang, J., Xia, B., Gao, Y.Q., Yi, C.Q.
PDB entry 5yte: Large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with with natural dT:dATP base pair
Classification: REPLICATION/DNA
Source organism: Thermus aquaticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2017-11-17
Authors: Zeng, H., Mondal, M., Song, R.Y., Zhang, J., Xia, B., Gao, Y.Q., Yi, C.Q.
PDB entry 5ytf: Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base M-fC pair with dA
Classification: TRANSFERASE/DNA
Source organism: Thermus aquaticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2017-11-17
Authors: Zeng, H., Mondal, M., Song, R.Y., Zhang, J., Xia, B., Gao, Y.Q., Yi, C.Q.
PDB entry 5ytg: Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base I-fC pair with dA
Classification: TRANSFERASE/DNA
Source organism: Thermus aquaticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2017-11-17
Authors: Zeng, H., Mondal, M., Song, R.Y., Zhang, J., Xia, B., Gao, Y.Q., Yi, C.Q.
PDB entry 5yth: Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base M-fC pair with dG
Classification: TRANSFERASE/DNA
Source organism: Thermus aquaticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2017-11-17
Authors: Zeng, H., Mondal, M., Song, R.Y., Zhang, J., Xia, B., Gao, Y.Q., Yi, C.Q.
PDB entry 5yti: Crystal structure of flagellar hook associated protein-3 (HAP-3: Q5ZW61_LEGPH) from Legionella pneumophila
Classification: STRUCTURAL PROTEIN
Source organism: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2017-11-18
Authors: Lankipalli, S., Hegde, R.P., Dey, D., Almo, S.C., Ramagopal, U.A.
PDB entry 5ytk: Crystal structure of SIRT3 bound to a leucylated AceCS2
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-11-18
Authors: Li, J., Gong, W., Xu, Y.
PDB entry 5ytl: Crystal structure of Geobacillus thermodenitrificans copper-containing nitrite reductase determined with an anaerobically manipulated crystal
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.401 Å
Deposited: 2017-11-19
Authors: Fukuda, Y., Matsusaki, T., Tse, K.M., Mizohata, E., Murphy, M.E.P., Inoue, T.
PDB entry 5ytm: C135A mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans determined by in-ouse source
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-11-19
Authors: Fukuda, Y., Matsusaki, T., Tse, K.M., Mizohata, E., Murphy, M.E.P., Inoue, T.
PDB entry 5ytn: C135A mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with peroxide
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-11-19
Authors: Fukuda, Y., Matsusaki, T., Tse, K.M., Mizohata, E., Murphy, M.E.P., Inoue, T.