LiteFold/PDB huggingface dataset:
PDB entry 3jbc: Complex of Poliovirus with VHH PVSP29F
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2015-08-26
Authors: Strauss, M., Schotte, L., Thys, B., Filman, D.J., Hogle, J.M.
PDB entry 3jbd: Complex of poliovirus with VHH PVSP6A
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2015-08-26
Authors: Strauss, M., Schotte, L., Thys, B., Filman, D.J., Hogle, J.M.
PDB entry 3jbe: Complex of poliovirus with VHH PVSS8A
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2015-08-26
Authors: Strauss, M., Schotte, L., Thys, B., Filman, D.J., Hogle, J.M.
PDB entry 3jbf: Complex of poliovirus with VHH PVSP19B
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2015-08-26
Authors: Strauss, M., Schotte, L., Thys, B., Filman, D.J., Hogle, J.M.
PDB entry 3jbg: Complex of poliovirus with VHH PVSS21E
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2015-08-26
Authors: Strauss, M., Schotte, L., Thys, B., Filman, D.J., Hogle, J.M.
PDB entry 3jbh: TWO HEAVY MEROMYOSIN INTERACTING-HEADS MOTIFS FLEXIBLE DOCKED INTO TARANTULA THICK FILAMENT 3D-MAP ALLOWS IN DEPTH STUDY OF INTRA- AND INTERMOLECULAR INTERACTIONS
Classification: CONTRACTILE PROTEIN
Source organism: Aphonopelma
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2015-09-01
Authors: Alamo, L., Qi, D., Wriggers, W., Pinto, A., Zhu, J., Bilbao, A., Gillilan, R.E., Hu, S., Padron, R.
PDB entry 3jbi: MDFF model of the vinculin tail domain bound to F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.5 Å
Deposited: 2015-09-02
Authors: Kim, L.Y., Thompson, P.M., Lee, H.T., Pershad, M., Campbell, S.L., Alushin, G.M.
PDB entry 3jbj: Cryo-EM reconstruction of F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2015-09-03
Authors: Kim, L.Y., Thompson, P.M., Lee, H.T., Pershad, M., Campbell, S.L., Alushin, G.M.
PDB entry 3jbk: Cryo-EM reconstruction of the metavinculin-actin interface
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.2 Å
Deposited: 2015-09-03
Authors: Kim, L.Y., Thompson, P.M., Lee, H.T., Pershad, M., Campbell, S.L., Alushin, G.M.
PDB entry 3jbl: Cryo-EM Structure of the Activated NAIP2/NLRC4 Inflammasome Reveals Nucleated Polymerization
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2015-09-05
Authors: Zhang, L., Chen, S., Ruan, J., Wu, J., Tong, A.B., Yin, Q., Li, Y., David, L., Lu, A., Wang, W.L., Marks, C., Ouyang, Q., Zhang, X., Mao, Y., Wu, H.
PDB entry 3jbm: Electron cryo-microscopy of a virus-like particle of orange-spotted grouper nervous necrosis virus
Classification: VIRUS
Source organism: Orange-spotted grouper nervous necrosis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2015-09-06
Authors: Xie, J., Li, K., Gao, Y., Huang, R., Lai, Y., Shi, Y., Yang, S., Zhu, G., Zhang, Q., He, J.
PDB entry 3jbn: Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
Classification: RIBOSOME
Source organism: Escherichia coli; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2015-09-16
Authors: Sun, M., Li, W., Blomqvist, K., Das, S., Hashem, Y., Dvorin, J.D., Frank, J.
PDB entry 3jbo: Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Classification: RIBOSOME
Source organism: Escherichia coli; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2015-09-16
Authors: Sun, M., Li, W., Blomqvist, K., Das, S., Hashem, Y., Dvorin, J.D., Frank, J.
PDB entry 3jbp: Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
Classification: RIBOSOME
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.7 Å
Deposited: 2015-09-16
Authors: Sun, M., Li, W., Blomqvist, K., Das, S., Hashem, Y., Dvorin, J.D., Frank, J.
PDB entry 3jbq: Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Bos taurus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 11 Å
Deposited: 2015-09-17
Authors: Zhang, Z., He, F., Constantine, R., Baker, M.L., Baehr, W., Schmid, M.F., Wensel, T.G., Agosto, M.A.
PDB entry 3jbr: Cryo-EM structure of the rabbit voltage-gated calcium channel Cav1.1 complex at 4.2 angstrom
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2015-09-29
Authors: Wu, J.P., Yan, Z., Yan, N.
PDB entry 3jbs: eL6 protein from yeast 60S ribosomal subunit
Classification: TRANSLATION
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2015-10-13
Authors: Passos, D.O., Lyumkis, D.
PDB entry 3jbt: Atomic structure of the Apaf-1 apoptosome
Classification: APOPTOSIS
Source organism: Equus caballus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2015-10-15
Authors: Zhou, M., Li, Y., Hu, Q., Bai, X., Huang, W., Yan, C., Scheres, S.H.W., Shi, Y.
PDB entry 3jbu: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Classification: RIBOSOME
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2015-10-16
Authors: Zhang, J., Pan, X.J., Yan, K.G., Sun, S., Gao, N., Sui, S.F.
PDB entry 3jbv: Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Classification: RIBOSOME
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2015-10-16
Authors: Zhang, J., Pan, X.J., Yan, K.G., Sun, S., Gao, N., Sui, S.F.
PDB entry 3jbw: Cryo-electron microscopy structure of RAG Paired Complex (with NBD, no symmetry)
Classification: RECOMBINATION/DNA
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2015-10-21
Authors: Ru, H., Chambers, M.G., Fu, T.-M., Tong, A.B., Liao, M., Wu, H.
PDB entry 3jbx: Cryo-electron microscopy structure of RAG Signal End Complex (C2 symmetry)
Classification: RECOMBINATION/DNA
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2015-10-22
Authors: Ru, H., Chambers, M.G., Fu, T.-M., Tong, A.B., Liao, M., Wu, H.
PDB entry 3jby: Cryo-electron microscopy structure of RAG Paired Complex (C2 symmetry)
Classification: RECOMBINATION/DNA
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2015-10-22
Authors: Ru, H., Chambers, M.G., Fu, T.-M., Tong, A.B., Liao, M., Wu, H.
PDB entry 3jbz: Crystal structure of mTOR docked into EM map of dimeric ATM kinase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 28 Å
Deposited: 2015-11-03
Authors: Lau, W.C.Y.
PDB entry 3jc1: Electron cryo-microscopy of the IST1-CHMP1B ESCRT-III copolymer
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2015-11-09
Authors: McCullough, J., Clippinger, A.K., Talledge, N., Skowyra, M.L., Saunders, M.G., Naismith, T.V., Colf, L.A., Afonine, P., Arthur, C., Sundquist, W.I., Hanson, P.I., Frost, A.
PDB entry 3jc2: The structure of the mammalian Sec61 channel opened by a signal sequence
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus; Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2015-11-15
Authors: Voorhees, R.M., Hegde, R.S.
PDB entry 3jc5: Structure of the eukaryotic replicative CMG helicase and pumpjack motion
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2015-11-24
Authors: Li, H., Bai, L., Yuan, Z., Sun, J., Georgescu, R.E., Liu, J., O'Donnell, M.E.
PDB entry 3jc6: Structure of the eukaryotic replicative CMG helicase and pumpjack motion
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2015-11-24
Authors: Li, H., Bai, L., Yuan, Z., Sun, J., Georgescu, R.E., Liu, J., O'Donnell, M.E.
PDB entry 3jc7: Structure of the eukaryotic replicative CMG helicase and pumpjack motion
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2015-11-24
Authors: Li, H., Bai, L., Yuan, Z., Sun, J., Georgescu, R.E., Liu, J., O'Donnell, M.E.
PDB entry 3jc8: Architectural model of the type IVa pilus machine in a piliated state
Classification: MOTOR PROTEIN
Source organism: Myxococcus xanthus DK 1622
Experimental method: ELECTRON MICROSCOPY
Deposited: 2015-11-24
Authors: Chang, Y.-W., Rettberg, L.A., Jensen, G.J.
PDB entry 3jc9: Architectural model of the type IVa pilus machine in a non-piliated state
Classification: MOTOR PROTEIN
Source organism: Myxococcus xanthus DK 1622
Experimental method: ELECTRON MICROSCOPY
Deposited: 2015-11-24
Authors: Chang, Y.-W., Rettberg, L.A., Jensen, G.J.
PDB entry 3jca: Core model of the Mouse Mammary Tumor Virus intasome
Classification: VIRAL PROTEIN
Source organism: Mouse mammary tumor virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2015-11-24
Authors: Lyumkis, D.L., Ballandras-Colas, A., Brown, M., Cook, N.J., Dewdney, T.G., Demeler, B., Cherepanov, P., Engelman, A.N.
PDB entry 3jcb: Structure of Simian Immunodeficiency Virus Envelope Spikes bound with CD4 and Monoclonal Antibody 36D5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Simian immunodeficiency virus
Experimental method: ELECTRON MICROSCOPY
Deposited: 2015-11-25
Authors: Hu, G., Liu, J., Roux, K., Taylor, K.A.
PDB entry 3jcc: Structure of Simian Immunodeficiency Virus Envelope Spikes bound with CD4 and Monoclonal Antibody 36D5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Simian immunodeficiency virus
Experimental method: ELECTRON MICROSCOPY
Deposited: 2015-11-25
Authors: Hu, G., Liu, J., Roux, K., Taylor, K.A.
PDB entry 3jcd: Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2015-12-01
Authors: Zhang, D., Yan, K., Liu, G., Song, G., Luo, J., Shi, Y., Cheng, E., Wu, S., Jiang, T., Low, J., Gao, N., Qin, Y.
PDB entry 3jce: Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2015-12-01
Authors: Zhang, D., Yan, K., Liu, G., Song, G., Luo, J., Shi, Y., Cheng, E., Wu, S., Jiang, T., Low, J., Gao, N., Qin, Y.
PDB entry 3jcf: Cryo-EM structure of the magnesium channel CorA in the closed symmetric magnesium-bound state
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2015-12-11
Authors: Matthies, D., Perozo, E., Subramaniam, S.
PDB entry 3jcg: Cryo-EM structure of the magnesium channel CorA in the magnesium-free, asymmetric open state I
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.06 Å
Deposited: 2015-12-11
Authors: Matthies, D., Perozo, E., Subramaniam, S.
PDB entry 3jch: Cryo-EM structure of the magnesium channel CorA in the magnesium-free, asymmetric open state II
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.06 Å
Deposited: 2015-12-11
Authors: Matthies, D., Perozo, E., Subramaniam, S.
PDB entry 3jci: 2.9 Angstrom Resolution Cryo-EM 3-D Reconstruction of Close-packed PCV2 Virus-like Particles
Classification: VIRUS LIKE PARTICLE
Source organism: Porcine circovirus-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2015-12-13
Authors: Liu, Z., Guo, F., Wang, F., Li, T.C., Jiang, W.
PDB entry 3jcj: Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2015-12-18
Authors: Sprink, T., Ramrath, D.J.F., Yamamoto, H., Yamamoto, K., Loerke, J., Ismer, J., Hildebrand, P.W., Scheerer, P., Buerger, J., Mielke, T., Spahn, C.M.T.
PDB entry 3jck: Structure of the yeast 26S proteasome lid sub-complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2015-12-20
Authors: Herzik Jr., M.A., Dambacher, C.M., Worden, E.J., Martin, A., Lander, G.C.
PDB entry 3jcl: Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer
Classification: VIRAL PROTEIN
Source organism: Murine hepatitis virus strain A59
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2015-12-21
Authors: Walls, A.C., Tortorici, M.A., Bosch, B.J., Frenz, B., Rottier, P.J.M., DiMaio, F., Rey, F.A., Veesler, D.
PDB entry 3jcm: Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae S288c; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2015-12-23
Authors: Wan, R., Yan, C., Bai, R., Wang, L., Huang, M., Wong, C.C., Shi, Y.
PDB entry 3jcn: Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2016-01-04
Authors: Sprink, T., Ramrath, D.J.F., Yamamoto, H., Yamamoto, K., Loerke, J., Ismer, J., Hildebrand, P.W., Scheerer, P., Buerger, J., Mielke, T., Spahn, C.M.T.
PDB entry 3jco: Structure of yeast 26S proteasome in M1 state derived from Titan dataset
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2016-01-06
Authors: Luan, B., Huang, X.L., Wu, J.P., Shi, Y.G., Wang, F.
PDB entry 3jcp: Structure of yeast 26S proteasome in M2 state derived from Titan dataset
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2016-01-06
Authors: Luan, B., Huang, X.L., Wu, J.P., Shi, Y.G., Wang, F.
PDB entry 3jcr: 3D structure determination of the human*U4/U6.U5* tri-snRNP complex
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2016-01-21
Authors: Agafonov, D.E., Kastner, B., Dybkov, O., Hofele, R.V., Liu, W.T., Urlaub, H., Luhrmann, R., Stark, H.
PDB entry 3jcs: 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
Classification: RIBOSOME
Source organism: Leishmania donovani
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2016-01-21
Authors: Shalev-Benami, M., Zhang, Y., Matzov, D., Halfon, Y., Zackay, A., Rozenberg, H., Zimmerman, E., Bashan, A., Jaffe, C.L., Yonath, A., Skiniotis, G.
PDB entry 3jct: Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2016-03-09
Authors: Wu, S., Kumcuoglu, B., Yan, K.G., Brown, H., Zhang, Y.X., Tan, D., Gamalinda, M., Yuan, Y., Li, Z.F., Jakovljevic, J., Ma, C.Y., Lei, J.L., Dong, M.Q., Woolford Jr., J.L., Gao, N.
PDB entry 3jcu: Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution
Classification: MEMBRANE PROTEIN
Source organism: Spinacia oleracea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2016-03-10
Authors: Wei, X.P., Zhang, X.Z., Su, X.D., Cao, P., Liu, X.Y., Li, M., Chang, W.R., Liu, Z.F.
PDB entry 3jcx: Canine Parvovirus complexed with Fab E
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Canine parvovirus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2016-03-21
Authors: Organtini, L.J., Iketani, S., Huang, K., Ashley, R.E., Makhov, A.M., Conway, J.F., Parrish, C.R., Hafenstein, S.
PDB entry 3jcz: Structure of bovine glutamate dehydrogenase in the unliganded state
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2016-03-27
Authors: Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.
PDB entry 3jd0: Glutamate dehydrogenase in complex with GTP
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2016-03-28
Authors: Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.
PDB entry 3jd1: Glutamate dehydrogenase in complex with NADH, closed conformation
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2016-03-28
Authors: Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.
PDB entry 3jd2: Glutamate dehydrogenase in complex with NADH, open conformation
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2016-03-28
Authors: Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.
PDB entry 3jd3: Glutamate dehydrogenase in complex with NADH and GTP, open conformation
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2016-03-28
Authors: Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.
PDB entry 3jd4: Glutamate dehydrogenase in complex with NADH and GTP, closed conformation
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2016-03-28
Authors: Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.
PDB entry 3jd5: Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Classification: RIBOSOME
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2016-04-08
Authors: Kaushal, P.S., Sharma, M.R., Booth, T.M., Haque, E.M., Tung, C.S., Sanbonmatsu, K.Y., Spremulli, L.L., Agrawal, R.K.
PDB entry 3jd6: Double octamer structure of retinoschisin, a cell-cell adhesion protein of the retina
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2016-04-12
Authors: Tolun, G., Vijayasarathy, C., Huang, R., Zeng, Y., Li, Y., Steven, A.C., Sieving, P.A., Heymann, J.B.
PDB entry 3jd7: The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs
Classification: VIRUS
Source organism: Coxsackievirus B3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2016-04-29
Authors: Lee, H., Shingler, K.L., Organtini, L.J., Ashley, R.E., Makhov, A.M., Conway, J.F., Hafenstein, S.
PDB entry 3jd8: cryo-EM structure of the full-length human NPC1 at 4.4 angstrom
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.43 Å
Deposited: 2016-05-01
Authors: Gong, X., Qian, H.W., Zhou, X.H., Wu, J.P., Zhou, Q., Yan, N.
PDB entry 3jdw: CRYSTAL STRUCTURE AND MECHANISM OF L-ARGININE: GLYCINE AMIDINOTRANSFERASE: A MITOCHONDRIAL ENZYME INVOLVED IN CREATINE BIOSYNTHESIS
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1997-01-24
Authors: Humm, A., Fritsche, E., Steinbacher, S., Huber, R.
PDB entry 3jpn: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dichloro methylene triphosphate
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2009-09-04
Authors: Batra, V.K., Upton, J., Kashmerov, B., Beard, W.A., Wilson, S.H., Goodman, M.F., McKenna, C.E.
PDB entry 3jpo: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-04
Authors: Batra, V.K., Upton, J., Kashmerov, B., Beard, W.A., Wilson, S.H., Goodman, M.F., McKenna, C.E.
PDB entry 3jpp: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-MonoMethyl Methylene triphosphate
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-09-04
Authors: Batra, V.K., Upton, J., Kashmerov, B., Beard, W.A., Wilson, S.H., Goodman, M.F., McKenna, C.E.
PDB entry 3jpq: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-04
Authors: Batra, V.K., Upton, J., Kashmerov, B., Beard, W.A., Wilson, S.H., Goodman, M.F., McKenna, C.E.
PDB entry 3jpr: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dimethyl methylene triphosphate
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-09-04
Authors: Batra, V.K., Upton, J., Kashmerov, B., Beard, W.A., Wilson, S.H., Goodman, M.F., McKenna, C.E.
PDB entry 3jps: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-04
Authors: Batra, V.K., Upton, J., Kashmerov, B., Beard, W.A., Wilson, S.H., Goodman, M.F., McKenna, C.E.
PDB entry 3jpt: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro chloro methylene triphosphate
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2009-09-04
Authors: Batra, V.K., Upton, J., Kashmerov, B., Beard, W.A., Wilson, S.H., Goodman, M.F., McKenna, C.E.
PDB entry 3jpu: LasR-TP4 complex
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-04
Authors: Zou, Y., Nair, S.K.
PDB entry 3jpv: Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a pyrrolo[2,3-a]carbazole ligand
Classification: transferase / transferase inhibitor
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2009-09-04
Authors: Filippakopoulos, P., Bullock, A.N., Fedorov, O., Akue-Gedu, R., Rossignol, E., Azzaro, S., Bain, J., Cohen, P., Prudhomme, M., Moreau, P., Amizon, F., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 3jpw: Crystal structure of amino terminal domain of the NMDA receptor subunit NR2B
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2009-09-04
Authors: Karakas, E., Simorowski, N., Furukawa, H.
PDB entry 3jpx: EED: A Novel Histone Trimethyllysine Binder Within The EED-EZH2 Polycomb Complex
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-09-04
Authors: Xu, C., Bian, C.B., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
PDB entry 3jpy: Crystal structure of the zinc-bound amino terminal domain of the NMDA receptor subunit NR2B
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.209 Å
Deposited: 2009-09-04
Authors: Karakas, E., Simorowski, N., Furukawa, H.
PDB entry 3jpz: Crystal Structure of Lombricine Kinase
Classification: TRANSFERASE
Source organism: Urechis caupo
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-09-04
Authors: Bush, D.J., Kirillova, O., Clark, S.A., Fabiola, F., Somasundaram, T., Chapman, M.S.
PDB entry 3jq0: Crystal structure of SusD superfamily protein (YP_001299712.1) from Bacteroides vulgatus ATCC 8482 at 1.13 A resolution
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides vulgatus ATCC 8482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2009-09-04
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3jq1: Crystal structure of SusD superfamily protein (YP_001297730.1) from Bacteroides vulgatus ATCC 8482 at 1.55 A resolution
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides vulgatus ATCC 8482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2009-09-04
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3jq3: Crystal Structure of Lombricine Kinase, complexed with substrate ADP
Classification: TRANSFERASE
Source organism: Urechis caupo
Experimental method: X-RAY DIFFRACTION
Resolution: 2.503 Å
Deposited: 2009-09-05
Authors: Bush, D.J., Kirillova, O., Clark, S.A., Fabiola, F., Somasundaram, T., Chapman, M.S.
PDB entry 3jq4: The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidin
Classification: RNA
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2009-09-06
Authors: Auerbach-Nevo, T., Mermershtain, I., Davidovich, C., Bashan, A., Rozenberg, H., Yonath, A.
PDB entry 3jq5: Phospholipase A2 Prevents the Aggregation of Amyloid Beta Peptides: Crystal Structure of the Complex of Phospholipase A2 with Octapeptide Fragment of Amyloid Beta Peptide, Asp-Ala-Glu-Phe-Arg-His-Asp-Ser at 2 A Resolution
Classification: HYDROLASE
Source organism: Naja sagittifera; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2009-09-06
Authors: Mirza, Z., Vikram, G., Singh, N., Sinha, M., Bhushan, A., Sharma, S., Srinivasan, A., Kaur, P., Singh, T.P.
PDB entry 3jq6: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 6,7-bis(1-methylethyl)pteridine-2,4-diamine (DX1)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jq7: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 6-phenylpteridine-2,4,7-triamine (DX2)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jq8: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 6,7,7-trimethyl-7,8-dihydropteridine-2,4-diamine (DX3)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jq9: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 2-amino-6-(1,3-benzodioxol-5-yl)-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile (AX1)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jqa: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 2-amino-1,9-dihydro-6H-purine-6-thione (DX4)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jqb: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 2-amino-5-(2-phenylethyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one (DX6)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jqc: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 2-amino-6-bromo-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile (JU2)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jqd: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 2-amino-4-oxo-6-phenyl-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile (DX7)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jqe: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 2-amino-6-(4-methoxyphenyl)-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile (DX8)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jqf: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 1,3,5-triazine-2,4,6-triamine (AX2)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jqg: Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 6-[(4-methoxybenzyl)sulfanyl]pyrimidine-2,4-diamine (AX6)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-06
Authors: Tulloch, L.B., Hunter, W.N.
PDB entry 3jqh: Structure of the neck region of the glycan-binding receptor DC-SIGNR
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2009-09-06
Authors: Feinberg, H., Tso, C.K.W., Taylor, M.E., Drickamer, K., Weis, W.I.
PDB entry 3jqj: Crystal structure of the molybdenum cofactor biosynthesis protein C (TTHA1789) from Thermus Theromophilus HB8
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-07
Authors: Kanaujia, S.P., Jeyakanthan, J., Nakagawa, N., Sekar, K., Baba, S., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3jqk: Crystal structure of the molybdenum cofactor biosynthesis protein C (TTHA1789) from Thermus Theromophilus HB8 (H32 FORM)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-09-07
Authors: Kanaujia, S.P., Jeyakanthan, J., Nakagawa, N., Sekar, K., Baba, S., Chen, L., Liu, Z.-J., Wang, B.-C., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3jql: Crystal Structure of the Complex Formed Between Phospholipase A2 and a Hexapeptide Fragment of Amyloid Beta Peptide, Lys-Leu-Val-Phe-Phe-Ala at 1.2 A Resolution
Classification: HYDROLASE
Source organism: Naja sagittifera; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2009-09-07
Authors: Mirza, Z., Vikram, G., Singh, N., Sinha, M., Sharma, S., Srinivasan, A., Kaur, P., Singh, T.P.
PDB entry 3jqm: Binding of 5'-GTP to molybdenum cofactor biosynthesis protein MoaC from Thermus theromophilus HB8
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-09-07
Authors: Kanaujia, S.P., Jeyakanthan, J., Nakagawa, N., Sekar, K., Shinkai, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3jqo: Crystal structure of the outer membrane complex of a type IV secretion system
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-09-07
Authors: Chandran, V., Fronzes, R., Duquerroy, S., Cronin, N., Navaza, J., Waksman, G.
PDB entry 3jqp: Crystal structure of the H286L mutant of Ferredoxin-NADP+ reductase from Plasmodium falciparum with 2'P-AMP
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2009-09-07
Authors: Canevari, G., Milani, M., Bolognesi, M.
PDB entry 3jqq: Crystal structure of the H286K mutant of Ferredoxin-NADP+ reductase from Plasmodium falciparum in complex with 2'P-AMP
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-09-07
Authors: Canevari, G., Milani, M., Bolognesi, M.
PDB entry 3jqr: Crystal structure of the H286L mutant of Ferredoxin-NADP+ reductase from Plasmodium falciparum
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-07
Authors: Canevari, G., Milani, M., Bolognesi, M.
PDB entry 3jqw: Crystal structure of Clostridium histolyticum colH collagenase collagen-binding domain 3 at 2 Angstrom resolution in presence of calcium
Classification: CELL ADHESION
Source organism: Clostridium histolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-08
Authors: Sakon, J., Philominathan, S.T.L., Matsushita, O., Bauer, R.
PDB entry 3jqx: Crystal structure of Clostridium histolyticum colH collagenase collagen binding domain 3 at 2.2 Angstrom resolution in the presence of calcium and cadmium
Classification: CELL ADHESION
Source organism: Clostridium histolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-09-08
Authors: Sakon, J., Philominathan, S.T.L., Bauer, R., Matsushita, O.
PDB entry 3jqy: Crystal Structure of the polySia specific acetyltransferase NeuO
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.699 Å
Deposited: 2009-09-08
Authors: Schulz, E.-C., Bergfeld, A., Muehlenhoff, M., Ficner, R.
PDB entry 3jqz: Crystal Structure of Human serum albumin complexed with Lidocaine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2009-09-08
Authors: Hein, K.L., Kragh-Hansen, U., Morth, J.P., Nissen, P.
PDB entry 3jr1: Crystal structure of Putative fructosamine-3-kinase (YP_719053.1) from HAEMOPHILUS SOMNUS 129PT at 2.32 A resolution
Classification: TRANSFERASE
Source organism: Haemophilus somnus 129PT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2009-09-08
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3jr2: X-ray crystal structure of the Mg-bound 3-keto-L-gulonate-6-phosphate decarboxylase from Vibrio cholerae O1 biovar El Tor str. N16961
Classification: BIOSYNTHETIC PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-08
Authors: Nocek, B., Maltseva, N., Stam, J., Anderson, W., Joachimiak, A., CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 3jr3: Sir2 bound to acetylated peptide
Classification: HYDROLASE
Source organism: Thermotoga maritima; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-09-08
Authors: Hawse, W.F., Wolberger, C.
PDB entry 3jr4: MutM interrogating an extrahelical G
Classification: Lyase/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2009-09-08
Authors: Qi, Y., Spong, M.C., Verdine, G.L.
PDB entry 3jr5: MutM lesion recognition control complex with N174C crosslinking site
Classification: Lyase/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.704 Å
Deposited: 2009-09-08
Authors: Qi, Y., Spong, M.C., Verdine, G.L.
PDB entry 3jr6: Sequential reorganization of beta-sheet topology by insertion of a single strand
Classification: HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2009-09-08
Authors: Sagermann, M., Baas, W.A., Matthews, B.W.
PDB entry 3jr7: The crystal structure of the protein of DegV family COG1307 with unknown function from Ruminococcus gnavus ATCC 29149
Classification: structural genomics, unknown function
Source organism: Ruminococcus gnavus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-08
Authors: Zhang, R., Hatzos, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3jr8: Crystal Structure of BthTX-II (Asp49-PLA2 from Bothrops jararacussu snake venom) with calcium ions
Classification: HYDROLASE
Source organism: Bothrops jararacussu
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-09-08
Authors: Borges, R.J., dos Santos, J.I., Fontes, M.R.M.
PDB entry 3jr9: Crystal structure of Fis bound to 27 bp optimal binding sequence F2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jra: Crystal structure of Fis bound to 27bp non consensus sequence DNA F6
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jrb: Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jrc: Crystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at center
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jrd: Crystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at center
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jre: Crystal structure of Fis bound to 27 bp DNA F26 containing A-tract at center
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jrf: Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jrg: Crystal structure of Fis bound to 27 bp non consensus sequence DNA F18
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jrh: Crystal structure of Fis bound to 27 bp non consensus sequence DNA F21
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jri: Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2009-09-08
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3jrk: A putative tagatose 1,6-diphosphate aldolase from Streptococcus pyogenes
Classification: LYASE
Source organism: Streptococcus pyogenes serotype M1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2009-09-08
Authors: Fan, Y., Volkart, L., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3jrm: Crystal structure of archaeal 20S proteasome in complex with mutated P26 activator
Classification: HYDROLASE/HYDROLASE ACTIVATOR
Source organism: Thermoplasma acidophilum; Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-09-08
Authors: Stadtmueller, B.M., Whitby, F.G., Hill, C.P.
PDB entry 3jrn: Crystal structure of TIR domain from Arabidopsis Thaliana
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-08
Authors: Chan, S.L., Mukasa, T., Santelli, E., Low, L.Y., Pascual, J.
PDB entry 3jro: NUP84-NUP145C-SEC13 edge element of the NPC lattice
Classification: TRANSPORT PROTEIN, STRUCTURAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 4.004 Å
Deposited: 2009-09-08
Authors: Brohawn, S.G., Schwartz, T.U.
PDB entry 3jrp: SEC13 with NUP145C (AA109-179) insertion blade
Classification: TRANSPORT PROTEIN, STRUCTURAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-09-08
Authors: Brohawn, S.G., Gogola, M., Schwartz, T.U.
PDB entry 3jrq: Crystal structure of (+)-ABA-bound PYL1 in complex with ABI1
Classification: HYDROLASE/Hormone Receptor
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-09-08
Authors: Miyazono, K., Miyakawa, T., Sawano, Y., Kubota, K., Tanokura, M.
PDB entry 3jrr: Crystal structure of the ligand binding suppressor domain of type 3 inositol 1,4,5-trisphosphate receptor
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-08
Authors: Chan, J., Ishiyama, N., Ikura, M.
PDB entry 3jrs: Crystal structure of (+)-ABA-bound PYL1
Classification: Hormone Receptor
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-09-08
Authors: Miyazono, K., Miyakawa, T., Sawano, Y., Kubota, K., Tanokura, M.
PDB entry 3jrt: Structure from the mobile metagenome of V. paracholerae: Integron cassette protein Vpc_cass2
Classification: Structural Genomics, Unknown function
Source organism: Vibrio paracholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-08
Authors: Harrop, S.J., Deshpande, C., Sureshan, V., Boucher, Y., Xu, X., Cui, H., Cuff, M., Edwards, A., Savchenko, A., Joachimiak, A., Stokes, H.W., Curmi, P.M.G., Mabbutt, B.C., Midwest Center for Structural Genomics (MCSG)
PDB entry 3jru: Crystal structure of Leucyl Aminopeptidase (pepA) from Xoo0834,Xanthomonas oryzae pv. oryzae KACC10331
Classification: HYDROLASE
Source organism: Xanthomonas oryzae pv. oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-09-08
Authors: Natarajan, S., Huynh, K.-H., Kang, L.W.
PDB entry 3jrv: Structure of poxvirus K7 protein in complex with RNA helicase DDX3
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Vaccinia virus WR; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-09-09
Authors: Oda, S., Khan, R.A.
PDB entry 3jrw: Phosphorylated BC domain of ACC2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-09-09
Authors: Cho, Y.S., Lee, J.I., Shin, D., Kim, H.T., Lee, T.G., Heo, Y.S.
PDB entry 3jrx: Crystal structure of the BC domain of ACC2 in complex with soraphen A
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-09-09
Authors: Cho, Y.S., Lee, J.I., Shin, D., Kim, H.T., Lee, T.G., Heo, Y.S.
PDB entry 3jry: Human Serum albumin with bound Sulfate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-09
Authors: Hein, K.L., Kragh-Hansen, U., Morth, J.P., Nissen, P.
PDB entry 3jrz: CcdBVfi-FormII-pH5.6
Classification: TOXIN
Source organism: Vibrio fischeri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-09-09
Authors: De Jonge, N., Buts, L., Loris, R.
PDB entry 3js1: Crystal structure of adipocyte fatty acid binding protein covalently modified with 4-hydroxy-2-nonenal
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2009-09-09
Authors: Hellberg, K., Grimsrud, P.A., Kruse, A.C., Banaszak, L.J., Ohlendorf, D.H., Bernlohr, D.A.
PDB entry 3js2: Crystal structure of minimal kinase domain of fibroblast growth factor receptor 1 in complex with 5-(2-thienyl)nicotinic acid
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-09-09
Authors: Bae, J.H., Ravindranathan, K.P., Mandiyan, V., Ekkati, A.R., Schlessinger, J., Jorgensen, W.L.