LiteFold/PDB huggingface dataset:
PDB entry 7bn9: Crystal Structure of Bacillus subtilis Penicillin Binding Protein 3
Classification: HYDROLASE
Source organism: Bacillus subtilis (strain 168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2021-01-21
Authors: Rao, V.A., Lewis, R.J.
PDB entry 7bna: ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHOD
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1985-01-07
Authors: Holbrook, S.R., Dickerson, R.E., Kim, S.-H.
PDB entry 7bnb: Notum fragment_50 (3-(quinazolin-4-ylsulfanyl)propanoic acid)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2021-01-21
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bnc: Notum fragment_126 (2-(1,2-dihydroacenaphthylen-5-ylsulfanyl)acetic acid)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2021-01-21
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bnd: Notum_Fragment41 (N-methyl-4,5-dihydronaphtho,2-bthiophene-2-carboxamide)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-01-21
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bne: Notum Nicotine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-01-22
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bnf: Notum Cotinine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-01-22
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bng: Complex structure of SH3b domain with L-canavanine
Classification: CELL ADHESION
Source organism: Staphylococcus simulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2021-01-22
Authors: Malecki, P.H., Sabala, I.
PDB entry 7bnh: Complex structure at atomic resolution of SH3b domain with benzoic acid
Classification: CELL ADHESION
Source organism: Staphylococcus simulans
Experimental method: X-RAY DIFFRACTION
Resolution: 0.84 Å
Deposited: 2021-01-22
Authors: Malecki, P.H., Sabala, I.
PDB entry 7bni: Complex structure of SH3b domain with 2-hydroxybenzoic acid
Classification: CELL ADHESION
Source organism: Staphylococcus simulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2021-01-22
Authors: Malecki, P.H., Sabala, I.
PDB entry 7bnj: Notum Riluzole
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2021-01-22
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bnk: Crystal structure of ParB from Myxococcus xanthus bound to CDP and Monothiophosphate
Classification: DNA BINDING PROTEIN
Source organism: Myxococcus xanthus (strain DK 1622)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-01-22
Authors: Altegoer, F., Bange, G.
PDB entry 7bnl: Notum ARUK3003710
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2021-01-22
Authors: Zhao, Y., Jones, E.Y., Fish, P.V., Svensson, F., Steadman, D.
PDB entry 7bnm: Closed conformation of D614G SARS-CoV-2 spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-01-22
Authors: Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.
PDB entry 7bnn: Open conformation of D614G SARS-CoV-2 spike with 1 Erect RBD
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-01-22
Authors: Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.
PDB entry 7bno: Open conformation of D614G SARS-CoV-2 spike with 2 Erect RBDs
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-01-22
Authors: Benton, D.J., Wrobel, A.G., Rosenthal, P.B., Gamblin, S.J.
PDB entry 7bnp: Llama nanobody nb17 raised against GldL from Flavobacterium jonhsoniae
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-01-22
Authors: Trinh, N.T., Cambillau, C., Leone, P.
PDB entry 7bnq: Lateral-closed conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-01-22
Authors: Haysom, S.F.
PDB entry 7bnr: Crystal structure of a ParB Q52A mutant from Myxococcus xanthus bound to CTPyS
Classification: DNA BINDING PROTEIN
Source organism: Myxococcus xanthus (strain DK 1622)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-01-22
Authors: Altegoer, F., Bange, G.
PDB entry 7bns: VDR complex with BXL-62
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-01-22
Authors: Rochel, N., Belorusova, A.Y.
PDB entry 7bnt: Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with a predicted ancestral HMA domain of Pik-1 from Oryza spp.
Classification: PROTEIN BINDING
Source organism: Magnaporthe oryzae; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2021-01-22
Authors: Bialas, A., Langner, T., Harant, A., Contreras, M.P., Stevenson, C.E.M., Lawson, D.M., Sklenar, J., Kellner, R., Moscou, M.J., Terauchi, R., Banfield, M.J., Kamoun, S.
PDB entry 7bnu: VDR complex with BXL-62
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-01-22
Authors: Rochel, N., Belorusova, A.Y.
PDB entry 7bnv: Crystal Structure of the SARS-CoV-2 Receptor Binding Domain in Complex with Antibody ION-300
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-01-22
Authors: Hall, G., Cowan, R., Carr, M.
PDB entry 7bnw: Llama nanobody nb18 raised against GldL from Flavobacterium jonhsoniae
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2021-01-22
Authors: Trinh, N.T., Cambillau, C., Leone, P.
PDB entry 7bnx: Archeal holliday junction resolvase from Thermus thermophilus phage 15-6
Classification: RECOMBINATION
Source organism: Thermus thermophilus phage 15-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.551 Å
Deposited: 2021-01-22
Authors: Hakansson, M., Ahlqvist, J., Linares Pasten, J.A., Jasilionis, A., Nordberg Karlsson, E., Al-Karadaghi, S.
PDB entry 7bny: Structure of 2A protein from encephalomyocarditis virus (EMCV)
Classification: VIRAL PROTEIN
Source organism: Mengo encephalomyocarditis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2021-01-22
Authors: Hill, C.H., Napthine, S., Pekarek, L., Kibe, A., Firth, A.E., Graham, S.C., Caliskan, N., Brierley, I.
PDB entry 7bo0: Crystal structure of ene-reductase GsOYE from Galdieria sulphuraria in complex with alpha-angelica lactone
Classification: OXIDOREDUCTASE
Source organism: Galdieria sulphuraria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2021-01-23
Authors: Robescu, M.S., Bergantino, E., Hall, M., Cendron, L.
PDB entry 7bo1: Notum Fragment_274 [(4-fluorophenyl)amino]thiourea
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-01-23
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bo2: Notum Fragment_130 (4H-thieno[3,2-c]chromene-2-carboxylic acid)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2021-01-23
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bo3: Human Butyrylcholinesterase in complex with N-(2-(1H-Indol-3-yl)ethyl)-2-cycloheptyl-N-methylethan-1-amine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-01-23
Authors: Brazzolotto, X., Meden, A., Knez, D., Nachon, F., Gobec, S.
PDB entry 7bo4: Human Butyrylcholinesterase in complex with 3-(2-(butyl(2-cycloheptylethyl)amino)ethyl)-1H-indol-6-ol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2021-01-23
Authors: Brazzolotto, X., Meden, A., Knez, D., Nachon, F., Gobec, S.
PDB entry 7bo5: Notum Fragment_130_methyEster (methyl 4H-thieno[3,2-c]chromene-2-carboxylate)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2021-01-23
Authors: Zhao, Y., Jones, E.Y.
PDB entry 7bo6: VDR complex with LCA derivative
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2021-01-24
Authors: Rochel, N.
PDB entry 7bo7: CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJB44355437
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2021-01-24
Authors: Brown, D., Robinson, C., Carr, K.H., Pande, V.
PDB entry 7bo8: A hexameric de novo coiled-coil assembly: CC-Type2-(VaYd)4-Y3F-W19(BrPhe)-Y24F.
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2021-01-24
Authors: Rhys, G.G., Brady, R.L., Woolfson, D.N.
PDB entry 7bo9: A hexameric de novo coiled-coil assembly: CC-Type2-(VaYd)4-Y3F-W19(BrPhe).
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2021-01-24
Authors: Rhys, G.G., Brady, R.L., Woolfson, D.N.
PDB entry 7boa: A hexameric de novo coiled-coil assembly: CC-Type2-(YaFd)4-W19(BrPhe).
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-01-24
Authors: Rhys, G.G., Martin, F.J.O., Brady, R.L., Woolfson, D.N.
PDB entry 7bob: Exo-beta-1,4-mannosidase Op5Man5 from Opitutaceae bacterium strain TAV5
Classification: HYDROLASE
Source organism: Opitutaceae bacterium TAV5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-01-24
Authors: Kalyani, D.C., Reichenbach, T., Keskitalo, M.M., Conrad, J., Aspeborg, H., Divne, C.
PDB entry 7boc: Crystal structure of the PRMT5 TIM barrel domain in complex with RioK1 peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-01-25
Authors: Krzyzanowski, A., t Hart, P., Waldmann, H., Gasper, R.
PDB entry 7bod: Bacterial 30S ribosomal subunit assembly complex state M (body domain)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Lopez-Alonso, J., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.R.
PDB entry 7boe: Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Lopez-Alonso, J., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.R.
PDB entry 7bof: Bacterial 30S ribosomal subunit assembly complex state I (body domain)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Lopez-Alonso, J., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7bog: Bacterial 30S ribosomal subunit assembly complex state E (body domain)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Lopez-Alonso, J., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7boh: Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7boi: Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7boj: Cryo-EM structure of the encapsulin shell from Mycobacterium smegmatis
Classification: VIRUS LIKE PARTICLE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2020-03-19
Authors: Tang, Y.T., Mu, A., Gong, H.R., Wang, Q., Rao, Z.H.
PDB entry 7bok: Cryo-EM structure of the encapsulated DyP-type peroxidase from Mycobacterium smegmatis
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2020-03-19
Authors: Tang, Y.T., Mu, A., Gong, H.R., Wang, Q., Rao, Z.H.
PDB entry 7bol: ubiquitin-conjugating enzyme, Ube2D2
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.797 Å
Deposited: 2020-03-19
Authors: Lee, S.O., Ryu, K.S., Chi, S.-W.
PDB entry 7bom: Crystal structure of recombinant horse spleen apo-R52C/E56C/R59C/E63C-Fr immobilized with gold ions.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2020-03-19
Authors: Hishikawa, Y., Maity, B., Ito, N., Abe, S., Lu, D., Ueno, T.
PDB entry 7bon: Crystal structure of recombinant horse spleen apo-R52C/E56C/R59C/E63C-Fr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2020-03-19
Authors: Hishikawa, Y., Maity, B., Ito, N., Abe, S., Lu, D., Ueno, T.
PDB entry 7boo: Crystal Structure of Core-mannan synthase A (CmsA/Ktr4) from Aspergillus fumigatus, apo form
Classification: TRANSFERASE
Source organism: Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-03-19
Authors: Hira, D., Onoue, T., Oka, T.
PDB entry 7bop: Crystal Structure of Core-mannan synthase A (CmsA/Ktr4) from Aspergillus fumigatus, Mn/GDP-form
Classification: TRANSFERASE
Source organism: Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-03-19
Authors: Hira, D., Onoue, T., Oka, T.
PDB entry 7bor: Structure of Pseudomonas aeruginosa CoA-bound OdaA
Classification: ISOMERASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2020-03-19
Authors: Zhao, N., Zhao, C., Liu, L., Li, T., Li, C., He, L., Zhu, Y., Song, Y., Bao, R.
PDB entry 7bos: Human SIRT2 in complex with myristoyl thiourea inhibitor, No.13
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-03-19
Authors: Kudo, N., Olsen, C.A., Minoru, Y.
PDB entry 7bot: Human SIRT2 in complex with myristoyl thiourea inhibitor, No.23
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-03-19
Authors: Kudo, N., Olsen, C.A., Minoru, Y.
PDB entry 7bou: GP8 of Mature Bacteriophage T7
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-03-19
Authors: Chen, W.Y., Xiao, H.
PDB entry 7bov: The Structure of Bacillus subtilis glycosyltransferase,Bs-YjiC
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 2.293 Å
Deposited: 2020-03-20
Authors: Zhao, C., Liu, B., Zhao, N.L., Luo, Y.Z., Bao, R.
PDB entry 7bow: Hydroxynitrile lyase from Parafonteria laminate
Classification: LYASE
Source organism: Parafontaria falcifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2020-03-20
Authors: Nuylert, A., Nakabayashi, M., Yamaguchi, T., Asano, Y.
PDB entry 7box: Mature bacteriorphage t7 tail adaptor protein gp11
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-03-20
Authors: Chen, W.Y., Xiao, H.
PDB entry 7boy: Mature bacteriorphage t7 tail nozzle protein gp12
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-03-20
Authors: Chen, W.Y., Xiao, H.
PDB entry 7boz: N-teminal of mature bacteriophage T7 tail fiber protein gp17
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-03-20
Authors: Chen, W.Y., Xiao, H.
PDB entry 7bp0: Packing Bacteriophage T7 portal protein GP8
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2020-03-20
Authors: Chen, W.Y., Xiao, H.
PDB entry 7bp1: Crystal structure of 2, 3-dihydroxybenzoic acid decarboxylase from Fusarium oxysporum in complex with Catechol
Classification: BIOSYNTHETIC PROTEIN
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2020-03-21
Authors: Song, M.K., Feng, J.H., Liu, W.D., Wu, Q.Q., Zhu, D.M.
PDB entry 7bp2: Structural mechanism directing nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)
Classification: NUCLEAR PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2020-03-21
Authors: Luo, Q., Baihui, W.
PDB entry 7bp3: Cryo-EM structure of the human MCT2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-03-21
Authors: Zhang, B., Jin, Q., Zhang, X., Guo, J., Ye, S.
PDB entry 7bp4: Structural insights into nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)
Classification: NUCLEAR PROTEIN
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-03-21
Authors: Luo, Q., Baihui, W.
PDB entry 7bp5: Structural insights into nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)
Classification: NUCLEAR PROTEIN
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-03-21
Authors: Luo, Q., Baihui, W.
PDB entry 7bp6: Structural insights into nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)
Classification: NUCLEAR PROTEIN/CHAPERONE
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2020-03-21
Authors: Luo, Q., Baihui, W.
PDB entry 7bp8: Human AAA+ ATPase VCP mutant - T76A, ADP-bound form
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-03-21
Authors: Yang, C., Zhang, H.
PDB entry 7bp9: Human AAA+ ATPase VCP mutant - T76E, ADP-bound form
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-03-21
Authors: Yang, C., Zhang, H.
PDB entry 7bpa: Human AAA+ ATPase VCP mutant - T76A, AMP-PNP-bound form, Conformation I
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-03-21
Authors: Yang, C., Zhang, H.
PDB entry 7bpb: Human AAA+ ATPase VCP mutant - T76E, AMP-PNP bound form, Conformation I
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-03-22
Authors: Yang, C., Zhang, H.
PDB entry 7bpc: Crystal structure of 2, 3-dihydroxybenzoic acid decarboxylase from Fusarium oxysporum in complex with 2,5-DHBA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-03-22
Authors: Song, M.K., Feng, J.H., Liu, W.D., Wu, Q.Q., Zhu, D.M.
PDB entry 7bpd: Crystal structural analysis of Swine dUTPase
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2020-03-22
Authors: Liang, R., Peng, G.Q.
PDB entry 7bpf: Structure of L-threoninol nucleic acid - RNA complex
Classification: RNA/NUCLEIC ACID
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-03-22
Authors: Kamiya, Y., Satoh, T., Kodama, A., Suzuki, T., Uchiyama, S., Kato, K., Asanuma, H.
PDB entry 7bpg: Structure of serinol nucleic acid - RNA complex
Classification: RNA/NUCLEIC ACID
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-03-22
Authors: Kamiya, Y., Satoh, T., Kodama, A., Suzuki, T., Uchiyama, S., Kato, K., Asanuma, H.
PDB entry 7bph: Crystal structure of GppNHp-bound GNAS in complex with the cyclic peptide inhibitor GN13
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2020-03-22
Authors: Hu, Q., Dai, S., Shokat, K.M.
PDB entry 7bpi: The crystal structue of PDE10A complexed with 14
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.40009 Å
Deposited: 2020-03-22
Authors: Yang, Y., Zhang, S., Zhou, Q., Huang, Y.-Y., Guo, L., Luo, H.-B.
PDB entry 7bpk: Zika virus envelope protein mutant bound to mAb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-03-23
Authors: Dai, L., Qi, J., Gao, G.F.
PDB entry 7bpl: Solution NMR structure of NF1; de novo designed protein with a novel fold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-23
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Minami, S., Koga, R., Chikenji, G., Koga, N.
PDB entry 7bpm: Solution NMR structure of NF2; de novo designed protein with a novel fold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-23
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Minami, S., Koga, R., Chikenji, G., Koga, N.
PDB entry 7bpn: Solution NMR structure of NF7; de novo designed protein with a novel fold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-23
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Minami, S., Koga, R., Chikenji, G., Koga, N.
PDB entry 7bpo: Hydroxynitrile lyase from Parafonteria laminate complexed with benzaldehyde
Classification: LYASE
Source organism: Parafontaria falcifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2020-03-23
Authors: Nuylert, A., Nakabayashi, M., Yamaguchi, T., Asano, Y.
PDB entry 7bpp: Solution NMR structure of NF5; de novo designed protein with a novel fold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-23
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Minami, S., Koga, R., Chikenji, G., Koga, N.
PDB entry 7bpr: Crystal structure of human TEX101
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-03-23
Authors: Masutani, M., Sakurai, S., Shimizu, T., Ohto, U.
PDB entry 7bps: Crystal structure of mouse TEX101
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-03-23
Authors: Masutani, M., Sakurai, S., Shimizu, T., Ohto, U.
PDB entry 7bpu: Structural and mechanistic insights into the biosynthesis of Digeranylgeranylglyceryl phosphate synthase in membranes
Classification: MEMBRANE PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2020-03-23
Authors: Cheng, W., Ren, S.
PDB entry 7bpv: r(GUGGGCCGAC)/d(GTCGGCCCAC) hybrid duplex structure
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 1.781 Å
Deposited: 2020-03-23
Authors: Wang, S.C., Satange, R.B., Hou, M.H.
PDB entry 7bpy: X-ray structure of human PPARalpha ligand binding domain-clofibric acid-SRC1 coactivator peptide co-crystals obtained by delipidation and co-crystallization
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2020-03-23
Authors: Kamata, S., Ishikawa, R., Akahane, M., Oyama, T., Ishii, I.
PDB entry 7bpz: X-ray structure of human PPARalpha ligand binding domain-bezafibrate-SRC1 coactivator peptide co-crystals obtained by soaking
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2020-03-23
Authors: Kamata, S., Ishikawa, R., Akahane, M., Oyama, T., Ishii, I.
PDB entry 7bq0: X-ray structure of human PPARalpha ligand binding domain-fenofibric acid-SRC1 coactivator peptide co-crystals obtained by delipidation and co-crystallization
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.771 Å
Deposited: 2020-03-23
Authors: Kamata, S., Ishikawa, R., Akahane, M., Oyama, T., Ishii, I.
PDB entry 7bq1: X-ray structure of human PPARalpha ligand binding domain-intrinsic fatty acid (E. coli origin)-SRC1 coactivator peptide co-crystals obtained by co-crystallization
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.521 Å
Deposited: 2020-03-23
Authors: Kamata, S., Ishikawa, R., Akahane, M., Oyama, T., Ishii, I.
PDB entry 7bq2: X-ray structure of human PPARalpha ligand binding domain-pemafibrate-SRC1 coactivator peptide co-crystals obtained by soaking
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2020-03-23
Authors: Kamata, S., Ishikawa, R., Akahane, M., Oyama, T., Ishii, I.
PDB entry 7bq3: X-ray structure of human PPARalpha ligand binding domain-GW7647-SRC1 coactivator peptide co-crystals obtained by delipidation and co-crystallization
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2020-03-23
Authors: Kamata, S., Ishikawa, R., Akahane, M., Oyama, T., Ishii, I.
PDB entry 7bq4: X-ray structure of human PPARalpha ligand binding domain-eicosapentaenoic acid (EPA)-SRC1 coactivator peptide co-crystals obtained by delipidation and co-crystallization
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2020-03-23
Authors: Kamata, S., Ishikawa, R., Akahane, M., Oyama, T., Ishii, I.
PDB entry 7bq5: ZIKV sE bound to mAb Z6
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2020-03-24
Authors: Dai, L., Qi, J., Gao, G.F.
PDB entry 7bq6: Crystal structure of Pennisetum glaucum monodehydroascorbate reductase
Classification: OXIDOREDUCTASE
Source organism: Cenchrus americanus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2020-03-24
Authors: Sonkar, K.S., Arulandu, A., Achary, M.M., Reddy, M.K.
PDB entry 7bq7: Crystal structure of 2019-nCoV nsp16-nsp10 complex
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2020-03-24
Authors: Yan, L.M., Huang, Y.C., Lou, Z.Y., Rao, Z.H.
PDB entry 7bq9: Crystal structure of ASFV p15
Classification: STRUCTURAL PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.612 Å
Deposited: 2020-03-24
Authors: Fu, D., Chen, C., Guo, Y.
PDB entry 7bqa: Crystal structure of ASFV p35
Classification: STRUCTURAL PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.102 Å
Deposited: 2020-03-24
Authors: Li, G.B., Fu, D., Chen, C., Guo, Y.
PDB entry 7bqb: Solution NMR structure of NF6; de novo designed protein with a novel fold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-24
Authors: Kobayashi, N., Nagashima, T., Minami, S., Koga, R., Chikenji, G., Koga, N.
PDB entry 7bqc: Solution NMR structure of NF4; de novo designed protein with a novel fold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-24
Authors: Kobayashi, N., Nagashima, T., Minami, S., Koga, R., Chikenji, T., Koga, N.
PDB entry 7bqd: Solution NMR structure of NF8 (knot fold); de novo designed protein with a novel fold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-24
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Minami, S., Koga, R., Chikenji, G., Koga, N.
PDB entry 7bqe: Solution NMR structure of NF3; de novo designed protein with a novel fold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-24
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Minami, S., Koga, R., Chikenji, G., Koga, N.
PDB entry 7bqf: Dimerization of SAV1 WW tandem
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.70038 Å
Deposited: 2020-03-24
Authors: Lin, Z., Zhang, M.
PDB entry 7bqg: Complex structure of SAV1 and Dendrin
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55011 Å
Deposited: 2020-03-24
Authors: Lin, Z., Zhang, M.
PDB entry 7bqi: Crystal structure of FYCO1 RUN domain
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-03-24
Authors: Sakurai, S., Shimizu, T., Ohto, U.
PDB entry 7bqj: The structure of PdxI
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus bombycis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2020-03-24
Authors: Cai, Y.J., Ohashi, M., Zhou, J.H., Tang, Y.
PDB entry 7bqk: The structure of PdxI in complex with its substrate analogue
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus bombycis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-03-24
Authors: Cai, Y.J., Ohashi, M., Zhou, J.H., Tang, Y.
PDB entry 7bql: The crystal structure of PdxI complex with the Alder-ene adduct
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus bombycis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.396 Å
Deposited: 2020-03-24
Authors: Cai, Y.J., Ohashi, M., Zhou, J.H., Tang, Y.
PDB entry 7bqm: Solution NMR structure of fold-0 Chantal; de novo designed protein with an asymmetric all-alpha topology
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-25
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Sakuma, K., Kosugi, T., Koga, R., Koga, N.
PDB entry 7bqn: Solution NMR structure of fold-C Rei; de novo designed protein with an asymmetric all-alpha topology
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-25
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Sakuma, K., Kosugi, T., Koga, R., Koga, N.
PDB entry 7bqo: The structure of HpiI in complex with its substrate analogue
Classification: BIOSYNTHETIC PROTEIN
Source organism: Hymenoscyphus scutula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2020-03-25
Authors: Cai, Y.J., Ohashi, M., Zhou, J.H., Tang, Y.
PDB entry 7bqp: The structure of HpiI
Classification: BIOSYNTHETIC PROTEIN
Source organism: Hymenoscyphus scutula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2020-03-25
Authors: Cai, Y.J., Ohashi, M., Zhou, J.H., Tang, Y.
PDB entry 7bqq: Solution NMR structure of fold-Z Gogy; de novo designed protein with an asymmetric all-alpha topology
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-25
Authors: Kobayashi, N., Sugiki, T., Fujiwara, T., Sakuma, K., Kosugi, T., Koga, R., Koga, N.
PDB entry 7bqr: Solution NMR structure of fold-K Mussoc; de novo designed protein with an asymmetric all-alpha topology
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-25
Authors: Kobayashi, N., Nagashima, T., Sakuma, K., Kosugi, T., Koga, R., Koga, N.
PDB entry 7bqs: Solution NMR structure of fold-U Nomur; de novo designed protein with an asymmetric all-alpha topology
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-03-25
Authors: Kobayashi, N., Nagashima, T., Sakuma, K., Kosugi, T., Koga, R., Koga, N.
PDB entry 7bqt: Epstein-Barr virus, C12 portal dodecamer
Classification: VIRAL PROTEIN
Source organism: Epstein-Barr virus (strain B95-8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2020-03-25
Authors: Li, Z., Yu, X.
PDB entry 7bqu: Cereblon in complex with SALL4 and (S)-thalidomide
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-03-25
Authors: Furihata, H., Miyauchi, Y., Asano, A., Tanokura, M., Miyakawa, T.
PDB entry 7bqv: Cereblon in complex with SALL4 and (S)-5-hydroxythalidomide
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-03-25
Authors: Furihata, H., Miyauchi, Y., Asano, A., Tanokura, M., Miyakawa, T.
PDB entry 7bqw: Crystal structure of Methionine gamma-lyase from Fusobacterium nucleatum
Classification: LYASE
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-03-25
Authors: Lan, J., Chen, Y., Liu, W., Xu, Y.
PDB entry 7bqx: Epstein-Barr virus, C5 portal vertex
Classification: VIRAL PROTEIN
Source organism: Epstein-Barr virus (strain B95-8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2020-03-25
Authors: Li, Z., Yu, X.
PDB entry 7bqy: THE CRYSTAL STRUCTURE OF COVID-19 MAIN PROTEASE IN COMPLEX WITH AN INHIBITOR N3 at 1.7 angstrom
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-03-26
Authors: Liu, X., Zhang, B., Jin, Z., Yang, H., Rao, Z.
PDB entry 7bqz: Crystal Structure of Spindlin1 bound to H3(K4me3-K9me3) peptide
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.101 Å
Deposited: 2020-03-26
Authors: Zhao, F., Li, H.
PDB entry 7br0: Crystal structure of AclR, a thioredoxin oxidoreductase fold protein carrying the CXXH catalytic motif
Classification: OXIDOREDUCTASE
Source organism: Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.003 Å
Deposited: 2020-03-26
Authors: Hara, K., Hashimoto, H., Maeda, N., Watanabe, K., Hertweck, C., Tsunematsu, Y.
PDB entry 7br1: Hydroxynitrile lyase from Parafontaria laminate complexed with benzaldehyde prepared by cocrystallization
Classification: LYASE
Source organism: Parafontaria laminata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2020-03-26
Authors: Nuylert, A., Nakabayashi, M., Yamaguchi, T., Asano, Y.
PDB entry 7br2: BT4096 a gut microbial diltiazem-metabolizing enzyme
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2020-03-26
Authors: Ko, T.-P., Chen, C.-C., Guo, R.-T.
PDB entry 7br3: Crystal structure of the protein 1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Pyrococcus abyssi (strain GE5 / Orsay)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2020-03-26
Authors: Cheng, L., Shao, Z.
PDB entry 7br4: Structure of deletion mutant of alpha-glucuronidase (TM0752) from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-03-26
Authors: Manoj, N., Mohapatra, S.B.
PDB entry 7br5: Lysozyme-sugar complex in H2O
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-03-26
Authors: Tanaka, I., Chatake, T.
PDB entry 7br7: Epstein-Barr virus, C1 portal-proximal penton vertex, CATC binding
Classification: VIRAL PROTEIN
Source organism: Epstein-Barr virus (strain B95-8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-03-26
Authors: Li, Z., Yu, X.
PDB entry 7br8: Epstein-Barr virus, C5 penton vertex, CATC absent.
Classification: VIRAL PROTEIN
Source organism: Epstein-Barr virus (strain B95-8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-03-26
Authors: Li, Z., Yu, X.
PDB entry 7br9: Crystal structure of mus musculus IRG1
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2020-03-27
Authors: Park, H.H., Chun, H.L.
PDB entry 7bra: Bacillus subtilis IRG1
Classification: STRUCTURAL PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.785 Å
Deposited: 2020-03-27
Authors: Park, H.H., Chun, H.L.
PDB entry 7brc: Crystal structure of the TMK3 LRR domain
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2020-03-27
Authors: Chen, H., Kong, Y.Q., Chen, J., Li, L., Li, X.S., Yu, F., Ming, Z.H.
PDB entry 7brd: Crystal structure of Peptidyl-tRNA hydrolase from Klebsiella pneumoniae
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.892 Å
Deposited: 2020-03-27
Authors: Mundra, S., Zohib, M., Pal, R.K., Biswal, B.K., Arora, A.
PDB entry 7bre: The crystal structure of MLL2 in complex with ASH2L and RBBP5
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2020-03-28
Authors: Li, Y., Zhao, L., Chen, Y.
PDB entry 7brf: Structure of NADH complex of Thermotoga maritima alpha-glucuronidase at 2.15 Angstrom resolution
Classification: HYDROLASE
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-03-28
Authors: Manoj, N., Mohapatra, S.B.
PDB entry 7brg: Atrial Natriuretic Peptide Receptor complexed with rat Atrial Natriuretic Peptide
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-03-29
Authors: Ogawa, H.
PDB entry 7brh: Atrial Natriuretic Peptide Receptor complexed with human Atrial Natriuretic Peptide
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-03-29
Authors: Ogawa, H.
PDB entry 7bri: Atrial Natriuretic Peptide Receptor complexed with Dendroaspis Natriuretic Peptide
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-03-29
Authors: Ogawa, H.
PDB entry 7brj: Atrial Natriuretic Peptide Receptor complexed with deletion mutant of human Atrial Natriuretic Peptide[7-28]
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-03-29
Authors: Ogawa, H.
PDB entry 7brk: Atrial Natriuretic Peptide Receptor complexed with deletion mutant of human Atrial Natriuretic Peptide[5-27]
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2020-03-29
Authors: Ogawa, H.
PDB entry 7brl: Atrial Natriuretic Peptide Receptor complexed with Deletion mutant of rat Atrial Natriuretic Peptide[4-17,23]
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-03-29
Authors: Ogawa, H.
PDB entry 7brm: Architecture of curli complex
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-03-29
Authors: Zhang, M., Shi, H.
PDB entry 7brn: Crystal structure of Atg40 AIM fused to Atg8
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.231 Å
Deposited: 2020-03-29
Authors: Yamasaki, A., Noda, N.N.
PDB entry 7bro: Crystal structure of the 2019-nCoV main protease
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-03-29
Authors: Fu, L.F.
PDB entry 7brp: Crystal structure of the 2019-nCoV main protease complexed with Boceprevir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-03-29
Authors: Fu, L.F.
PDB entry 7brq: Crystal structure of human FAM134B LIR fused to human GABARAP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.404 Å
Deposited: 2020-03-29
Authors: Yamasaki, A., Noda, N.N.
PDB entry 7brs: E.coli beta-galactosidase (E537Q) in complex with fluorescent probe KSA02
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2020-03-30
Authors: Chen, X., Hu, Y.L., Gao, Y., Yuan, R., Guo, Y.
PDB entry 7brt: Crystal structure of Sec62 LIR fused to GABARAP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2020-03-30
Authors: Yamasaki, A., Noda, N.N.
PDB entry 7bru: Crystal structure of human RTN3 LIR fused to human GABARAP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.149 Å
Deposited: 2020-03-30
Authors: Yamasaki, A., Noda, N.N.
PDB entry 7brv: Bovine Pancreatic Trypsin with 4-Bromobenzamidine (Room Temperature)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-03-30
Authors: Takeda, R., Ito, S., Maeki, M., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7brw: Bovine Pancreatic Trypsin with 5-chlorotryptamine (Room Temperature)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7brx: Bovine Pancreatic Trypsin with 5-Methoxytryptamine (Room Temperature)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bry: Bovine Pancreatic Trypsin with 6-Methoxytryptamine (Room Temperature)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7brz: Bovine Pancreatic Trypsin with 2-Methyltryptamine (Room Temperature)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bs0: Bovine Pancreatic Trypsin with aniline (Room Temperature)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bs1: Bovine Pancreatic Trypsin with benzamidine (Room Temperature)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bs2: Bovine Pancreatic Trypsin with serotonin (Room Temperature)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bs3: Bovine Pancreatic Trypsin with 4-Bromo-benzamidine (Cryo)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bs4: Bovine Pancreatic Trypsin with 5-Methoxytryptamine (Cryo)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bs5: Bovine Pancreatic Trypsin with 6-Methoxytryptamine (Cryo)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bs6: Bovine Pancreatic Trypsin with 2-Methyltryptamine (Cryo)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.
PDB entry 7bs7: Bovine Pancreatic Trypsin with aniline (Cryo)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2020-03-30
Authors: Maeki, M., Ito, S., Takeda, R., Funakubo, T., Ueno, G., Ishida, A., Tani, H., Yamamoto, M., Tokeshi, M.