LiteFold/PDB huggingface dataset:
PDB entry 4v1s: Structure of the GH76 alpha-mannanase BT2949 from Bacteroides thetaiotaomicron
Classification: HYDROLASE
Source organism: BACTEROIDES THETAIOTAOMICRON
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-10-02
Authors: Thompson, A.J., Cuskin, F., Spears, R.J., Dabin, J., Turkenburg, J.P., Gilbert, H.J., Davies, G.J.
PDB entry 4v1t: Heterocyclase in complex with substrate and Cofactor
Classification: HYDROLASE
Source organism: LYNGBYA AESTUARII; UNCULTURED PROCHLORON SP.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2014-10-02
Authors: Koehnke, J., Naismith, J.H.
PDB entry 4v1u: Heterocyclase in complex with substrate and Cofactor
Classification: HYDROLASE
Source organism: LYNGBYA AESTUARII; UNCULTURED PROCHLORON SP.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2014-10-02
Authors: Koehnke, J., Naismith, J.H.
PDB entry 4v1v: Heterocyclase in complex with substrate and Cofactor
Classification: HYDROLASE
Source organism: LYNGBYA AESTUARII; UNCULTURED PROCHLORON SP.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2014-10-02
Authors: Koehnke, J., Naismith, J.H.
PDB entry 4v1w: 3D structure of horse spleen apoferritin determined by electron cryomicroscopy
Classification: STORAGE PROTEIN
Source organism: EQUUS CABALLUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2014-10-02
Authors: Russo, C.J., Passmore, L.A.
PDB entry 4v1x: The structure of the hexameric atrazine chlorohydrolase, AtzA
Classification: HYDROLASE
Source organism: PSEUDOMONAS SP. ADP
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-10-04
Authors: Peat, T.S., Newman, J., Balotra, S., Lucent, D., Warden, A.C., Scott, C.
PDB entry 4v1y: The structure of the hexameric atrazine chlorohydrolase, AtzA
Classification: HYDROLASE
Source organism: PSEUDOMONAS SP. ADP
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-10-04
Authors: Peat, T.S., Newman, J., Balotra, S., Lucent, D., Warden, A.C., Scott, C.
PDB entry 4v1z: The 3-D structure of the cellobiohydrolase, Cel7A, from Aspergillus fumigatus
Classification: HYDROLASE
Source organism: ASPERGILLUS FUMIGATUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2014-10-04
Authors: Moroz, O.V., Maranta, M., Shaghasi, T., Harris, P.V., Wilson, K.S., Davies, G.J.
PDB entry 4v20: The 3-D structure of the cellobiohydrolase, Cel7A, from Aspergillus fumigatus, disaccharide complex
Classification: HYDROLASE
Source organism: ASPERGILLUS FUMIGATUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-10-05
Authors: Moroz, O.V., Maranta, M., Shaghasi, T., Harris, P.V., Wilson, K.S., Davies, G.J.
PDB entry 4v23: RSV Matrix protein
Classification: VIRAL PROTEIN
Source organism: RESPIRATORY SYNCYTIAL VIRUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-10-05
Authors: Forster, A., Maertens, G., Bajorek, M.
PDB entry 4v24: Sphingosine kinase 1 in complex with PF-543
Classification: TRANSFERASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-10-05
Authors: Elkins, J.M., Wang, J., Sorrell, F., Tallant, C., Wang, D., Shrestha, L., Bountra, C., von Delft, F., Knapp, S., Edwards, A.
PDB entry 4v25: VER-246608, a novel pan-isoform ATP competitive inhibitor of pyruvate dehydrogenase kinase, disrupts Warburg metabolism and induces context- dependent cytostasis in cancer cells
Classification: TRANSFERASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-10-06
Authors: Moore, J.D., Staniszewska, A., Shaw, T., D'Alessandro, J., Davis, B., Surgenor, A., Baker, L., Matassova, N., Murray, J., Macias, A., Brough, P., Wood, M., Mahon, P.C.
PDB entry 4v26: VER-246608, a novel pan-isoform ATP competitive inhibitor of pyruvate dehydrogenase kinase, disrupts Warburg metabolism and induces context- dependent cytostasis in cancer cells
Classification: TRANSFERASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2014-10-06
Authors: Moore, J.D., Staniszewska, A., Shaw, T., D'Alessandro, J., Davis, B., Surgenor, A., Baker, L., Matassova, N., Murray, J., Macias, A., Brough, P., Wood, M., Mahon, P.C.
PDB entry 4v27: Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-isofagomine
Classification: HYDROLASE
Source organism: BACTEROIDES XYLANISOLVENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-10-07
Authors: Hakki, Z., Bellmaine, S., Thompson, A.J., Speciale, G., Davies, G.J., Williams, S.J.
PDB entry 4v28: Structure of an E333Q variant of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with Man-Man-Methylumbelliferone
Classification: HYDROLASE
Source organism: BACTEROIDES XYLANISOLVENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2014-10-07
Authors: Hakki, Z., Bellmaine, S., Thompson, A.J., Speciale, G., Davies, G.J., Williams, S.J.
PDB entry 4v29: The crystal structure of Arabidopsis thaliana CAR4 in complex with two calcium ions
Classification: CALCIUM BINDING PROTEIN
Source organism: ARABIDOPSIS THALIANA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-10-07
Authors: Diaz, M., Albert, A.
PDB entry 4v2a: human Unc5A ectodomain
Classification: APOPTOSIS
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-10-08
Authors: Seiradake, E., del Toro, D., Nagel, D., Cop, F., Haertl, R., Ruff, T., Seyit-Bremer, G., Harlos, K., Border, E.C., Acker-Palmer, A., Jones, E.Y., Klein, R.
PDB entry 4v2b: rat Unc5D Ig domain 1
Classification: APOPTOSIS
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-10-08
Authors: Seiradake, E., del Toro, D., Nagel, D., Cop, F., Haertl, R., Ruff, T., Seyit-Bremer, G., Harlos, K., Border, E.C., Acker-Palmer, A., Jones, E.Y., Klein, R.
PDB entry 4v2c: mouse FLRT2 LRR domain in complex with rat Unc5D Ig1 domain
Classification: APOPTOSIS
Source organism: MUS MUSCULUS; RATTUS NORVEGICUS
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2014-10-08
Authors: Seiradake, E., del Toro, D., Nagel, D., Cop, F., Haertl, R., Ruff, T., Seyit-Bremer, G., Harlos, K., Border, E.C., Acker-Palmer, A., Jones, E.Y., Klein, R.
PDB entry 4v2d: FLRT2 LRR domain
Classification: SIGNALING PROTEIN
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-10-08
Authors: Seiradake, E., del Toro, D., Nagel, D., Cop, F., Haertl, R., Ruff, T., Seyit-Bremer, G., Harlos, K., Border, E.C., Acker-Palmer, A., Jones, E.Y., Klein, R.
PDB entry 4v2e: FLRT3 LRR domain
Classification: SIGNALING PROTEIN
Source organism: MUS MUSCULUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-10-08
Authors: Seiradake, E., del Toro, D., Nagel, D., Cop, F., Haertl, R., Ruff, T., Seyit-Bremer, G., Harlos, K., Border, E.C., Acker-Palmer, A., Jones, E.Y., Klein, R.
PDB entry 4v2f: Tetracycline repressor TetR(D), unliganded
Classification: TRANSCRIPTION
Source organism: ESCHERICHIA COLI
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-10-09
Authors: Werten, S., Orth, P., Saenger, W., Hinrichs, W.
PDB entry 4v2g: Tetracycline repressor TetR(D) bound to chlortetracycline and iso- chlortetracycline
Classification: TRANSCRIPTION
Source organism: ESCHERICHIA COLI
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2014-10-09
Authors: Werten, S., Orth, P., Saenger, W., Hinrichs, W.
PDB entry 4v2i: Biochemical characterization and structural analysis of a new cold- active and salt tolerant esterase from the marine bacterium Thalassospira sp
Classification: HYDROLASE
Source organism: THALASSOSPIRA SP. GB04J01
Experimental method: X-RAY DIFFRACTION
Resolution: 1.686 Å
Deposited: 2014-10-10
Authors: Santi, C.D., Leiros, H.-K.S., Scala, A.D., Pascale, D.D., Altermark, B., Willassen, N.-P.
PDB entry 4v2k: Crystal structure of the thiosulfate dehydrogenase TsdA in complex with thiosulfate
Classification: OXIDOREDUCTASE
Source organism: ALLOCHROMATIUM VINOSUM
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2014-10-10
Authors: Grabarczyk, D.B., Chappell, P.E., Eisel, B., Johnson, S., Lea, S.M., Berks, B.C.
PDB entry 4v2l: Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 3.4 MGy, focused in disulfide bonds.
Classification: OXIDOREDUCTASE
Source organism: LITOPENAEUS VANNAMEI
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2014-10-10
Authors: Campos-Acevedo, A.A., Rudino-Pinera, E.
PDB entry 4v2m: Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 34 MGy, focused in disulfide bonds.
Classification: OXIDOREDUCTASE
Source organism: LITOPENAEUS VANNAMEI
Experimental method: X-RAY DIFFRACTION
Resolution: 1.841 Å
Deposited: 2014-10-10
Authors: Campos-Acevedo, A.A., Rudino-Pinera, E.
PDB entry 4v2n: Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 85 MGy, focused in disulfide bonds
Classification: OXIDOREDUCTASE
Source organism: LITOPENAEUS VANNAMEI
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-10-10
Authors: Campos-Acevedo, A.A., Rudino-Pinera, E.
PDB entry 4v2o: Structure of saposin B in complex with chloroquine
Classification: HYDROLASE ACTIVATOR
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2014-10-13
Authors: Zubieta, C., Lai, X., Doyle, R.P.
PDB entry 4v2p: Ketosynthase MxnB
Classification: TRANSFERASE
Source organism: MYXOCOCCUS FULVUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2014-10-13
Authors: Koehnke, J.
PDB entry 4v2q: Ironing out their differences: Dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase
Classification: LYASE
Source organism: TAXUS WALLICHIANA VAR. CHINENSIS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-10-14
Authors: Heberling, M., Masman, M., Bartsch, S., Wybenga, G.G., Dijkstra, B.W., Marrink, S., Janssen, D.
PDB entry 4v2r: Ironing out their differences: Dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase
Classification: LYASE
Source organism: TAXUS WALLICHIANA VAR. CHINENSIS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-10-14
Authors: Heberling, M., Masman, M., Bartsch, S., Wybenga, G.G., Dijkstra, B.W., Marrink, S., Janssen, D.
PDB entry 4v2s: Crystal structure of Hfq in complex with the sRNA RydC
Classification: RNA BINDING PROTEIN/RNA
Source organism: ESCHERICHIA COLI; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.48 Å
Deposited: 2014-10-14
Authors: Dimastrogiovanni, D., Frohlich, K.S., Bruce, H.A., Bandyra, K.J., Hohensee, S., Vogel, J., Luisi, B.F.
PDB entry 4v2t: Membrane embedded pleurotolysin pore with 13 fold symmetry
Classification: TRANSPORT PROTEIN
Source organism: PLEUROTUS OSTREATUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 11 Å
Deposited: 2014-10-15
Authors: Lukoyanova, N., Kondos, S.C., Farabella, I., Law, R.H.P., Reboul, C.F., Caradoc-Davies, T.T., Spicer, B.A., Kleifeld, O., Perugini, M., Ekkel, S., Hatfaludi, T., Oliver, K., Hotze, E.M., Tweten, R.K., Whisstock, J.C., Topf, M., Dunstone, M.A., Saibil, H.R.
PDB entry 4v2u: Apo-structure of alpha2,3-sialyltransferase from Pasteurella dagmatis
Classification: TRANSFERASE
Source organism: PASTEURELLA DAGMATIS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2014-10-15
Authors: Pavkov-Keller, T., Schmoelzer, K., Czabany, T., Luley-Goedl, C., Ribitsch, D., Schwab, H., Nidetzky, B., Gruber, K.
PDB entry 4v2v: JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27me3 PEPTIDE (25-29) ARK(me3)SA
Classification: OXIDOREDUCTASE
Source organism: HOMO SAPIENS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-10-15
Authors: Chowdhury, R., Madden, S.K., Schofield, C.J.
PDB entry 4v2w: JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27me3 PEPTIDE (16-35)
Classification: OXIDOREDUCTASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2014-10-15
Authors: Chowdhury, R., Zafred, D., Schofield, C.J.
PDB entry 4v2x: High resolution structure of the full length tri-modular endo-beta-1, 4-glucanase B (Cel5B) from Bacillus halodurans
Classification: HYDROLASE
Source organism: BACILLUS HALODURANS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2014-10-15
Authors: Venditto, I., Santos, H., Ferreira, L.M.A., Sakka, K., Fontes, C.M.G.A., Najmudin, S.
PDB entry 4v2y: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide
Classification: SIGNALING PROTEIN
Source organism: MAGNETOSPIRILLUM GRYPHISWALDENSE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2014-10-15
Authors: Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.
PDB entry 4v2z: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Pomalidomide
Classification: SIGNALING PROTEIN
Source organism: MAGNETOSPIRILLUM GRYPHISWALDENSE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2014-10-15
Authors: Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.
PDB entry 4v30: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Lenalidomide
Classification: SIGNALING PROTEIN
Source organism: MAGNETOSPIRILLUM GRYPHISWALDENSE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2014-10-15
Authors: Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.
PDB entry 4v31: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Deoxyuridine
Classification: SIGNALING PROTEIN
Source organism: MAGNETOSPIRILLUM GRYPHISWALDENSE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-10-15
Authors: Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.
PDB entry 4v32: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide, Y101F mutant
Classification: SIGNALING PROTEIN
Source organism: MAGNETOSPIRILLUM GRYPHISWALDENSE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-10-15
Authors: Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.
PDB entry 4v33: Crystal structure of the putative polysaccharide deacetylase BA0330 from bacillus anthracis
Classification: HYDROLASE
Source organism: BACILLUS ANTHRACIS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2014-10-16
Authors: Giastas, P., Andreou, A., Bouriotis, V., Eliopoulos, E.
PDB entry 4v34: The Structure of A-PGS from Pseudomonas aeruginosa (SeMet derivative)
Classification: TRANSFERASE
Source organism: PSEUDOMONAS AERUGINOSA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2014-10-16
Authors: Krausze, J., Hebecker, S., Hasenkampf, T., Heinz, D.W., Moser, J.
PDB entry 4v35: The Structure of A-PGS from Pseudomonas aeruginosa
Classification: TRANSFERASE
Source organism: PSEUDOMONAS AERUGINOSA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-10-16
Authors: Krausze, J., Hebecker, S., Hasenkampf, T., Heinz, D.W., Moser, J.
PDB entry 4v36: The structure of L-PGS from Bacillus licheniformis
Classification: TRANSFERASE
Source organism: BACILLUS LICHENIFORMIS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-10-16
Authors: Krausze, J., Hebecker, S., Heinz, D.W., Moser, J.
PDB entry 4v37: Crystal structure of betaine aldehyde dehydrogenase from spinach showing a thiohemiacetal with 3-aminopropionaldehyde
Classification: OXIDOREDUCTASE
Source organism: SPINACIA OLERACEA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-10-16
Authors: Zarate-Romero, A., Munoz-Clares, R.A.
PDB entry 4v38: Apo-structure of alpha2,3-sialyltransferase variant 1 from Pasteurella dagmatis
Classification: TRANSFERASE
Source organism: PASTEURELLA DAGMATIS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2014-10-17
Authors: Pavkov-Keller, T., Schmoelzer, K., Czabany, T., Luley-Goedl, C., Ribitsch, D., Schwab, H., Nidetzky, B., Gruber, K.
PDB entry 4v39: Apo-structure of alpha2,3-sialyltransferase variant 2 from Pasteurella dagmatis
Classification: TRANSFERASE
Source organism: PASTEURELLA DAGMATIS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-10-17
Authors: Pavkov-Keller, T., Schmoelzer, K., Czabany, T., Luley-Goedl, C., Ribitsch, D., Schwab, H., Nidetzky, B., Gruber, K.
PDB entry 4v3a: Membrane bound pleurotolysin prepore (TMH1 lock) trapped with engineered disulphide cross-link
Classification: TRANSPORT PROTEIN
Source organism: PLEUROTUS OSTREATUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2014-10-17
Authors: Lukoyanova, N., Kondos, S.C., Farabella, I., Law, R.H.P., Reboul, C.F., CaradocDavies, T.T., Spicer, B.A., Kleifeld, O., Perugini, M., Ekkel, S., Hatfaludi, T., Oliver, K., Hotze, E.M., Tweten, R.K., Whisstock, J.C., Topf, M., Dunstone, M.A., Saibil, H.R.
PDB entry 4v3b: The structure of alpha2,3-sialyltransferase variant 1 from Pasteurella dagmatis in complex with the donor product CMP
Classification: TRANSFERASE
Source organism: PASTEURELLA DAGMATIS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2014-10-17
Authors: Pavkov-Keller, T., Schmoelzer, K., Czabany, T., Luley-Goedl, C., Ribitsch, D., Schwab, H., Nidetzky, B., Gruber, K.
PDB entry 4v3c: The structure of alpha2,3-sialyltransferase variant 2 from Pasteurella dagmatis in complex with the donor product CMP
Classification: TRANSFERASE
Source organism: PASTEURELLA DAGMATIS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2014-10-17
Authors: Pavkov-Keller, T., Schmoelzer, K., Czabany, T., Luley-Goedl, C., Ribitsch, D., Schwab, H., Nidetzky, B., Gruber, K.
PDB entry 4v3d: The CIDRa domain from HB3var03 PfEMP1 bound to endothelial protein C receptor
Classification: SIGNALING PROTEIN
Source organism: HOMO SAPIENS; PLASMODIUM FALCIPARUM
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2014-10-17
Authors: Lau, C.K.Y., Turner, L., Jespersen, J.S., Lowe, E.D., Petersen, B., Wang, C.W., Petersen, J.E.V., Lusingu, J., Theander, T.G., Lavstsen, T., Higgins, M.K.
PDB entry 4v3e: The CIDRa domain from IT4var07 PfEMP1 bound to endothelial protein C receptor
Classification: SIGNALING PROTEIN
Source organism: HOMO SAPIENS; PLASMODIUM FALCIPARUM
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-10-17
Authors: Lau, C.K.Y., Turner, L., Jespersen, J.S., Lowe, E.D., Petersen, B., Wang, C.W., Petersen, J.E.V., Lusingu, J., Theander, T.G., Lavstsen, T., Higgins, M.K.
PDB entry 4v3f: Crystal structure of betaine aldehyde dehydrogenase from spinach showing a thiohemiacetal with betaine aldehyde
Classification: OXIDOREDUCTASE
Source organism: SPINACIA OLERACEA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.998 Å
Deposited: 2014-10-18
Authors: Zarate-Romero, A., Munoz-Clares, R.A.
PDB entry 4v3g: Crystal structure of CymA from Klebsiella oxytoca
Classification: TRANSPORT PROTEIN
Source organism: KLEBSIELLA OXYTOCA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.513 Å
Deposited: 2014-10-18
Authors: van den Berg, B., Bhamidimarri, S.P., Kleinekathoefer, U., Winterhalter, M.
PDB entry 4v3h: Crystal structure of CymA from Klebsiella oxytoca
Classification: MEMBRANE
Source organism: KLEBSIELLA OXYTOCA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2014-10-18
Authors: van den Berg, B., Bhamidimarri, S.P., Kleinekathoefer, U., Winterhalter, M.
PDB entry 4v3i: Crystal Structure of TssL from Vibrio cholerae.
Classification: UNKNOWN FUNCTION
Source organism: VIBRIO CHOLERAE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2014-10-19
Authors: Jeong, J.H., Kim, Y.G.
PDB entry 4v3j: Structural and functional characterization of a novel monotreme- specific protein from the milk of the platypus
Classification: UNKNOWN FUNCTION
Source organism: ORNITHORHYNCHUS ANATINUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2014-10-20
Authors: Kumar, A., Newman, J., Polekina, G., Adams, T.E., Sharp, J.A., Peat, T.S., Nicholas, K.R.
PDB entry 4v3k: RNF38-UbcH5B-UB complex
Classification: LIGASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2014-10-20
Authors: Buetow, L., Gabrielsen, M., Anthony, N.G., Dou, H., Patel, A., Aitkenhead, H., Sibbet, G.J., Smith, B.O., Huang, D.T.
PDB entry 4v3l: RNF38-UB-UbcH5B-Ub complex
Classification: LIGASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2014-10-20
Authors: Buetow, L., Gabrielsen, M., Anthony, N.G., Dou, H., Patel, A., Aitkenhead, H., Sibbet, G.J., Smith, B.O., Huang, D.T.
PDB entry 4v3m: Membrane bound pleurotolysin prepore (TMH2 helix lock) trapped with engineered disulphide cross-link
Classification: TRANSPORT PROTEIN
Source organism: PLEUROTUS OSTREATUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 17 Å
Deposited: 2014-10-20
Authors: Lukoyanova, N., Kondos, S.C., Farabella, I., Law, R.H.P., Reboul, C.F., Caradoc-Davies, T.T., Spicer, B.A., Kleifeld, O., Perugini, M., Ekkel, S., Hatfaludi, T., Oliver, K., Hotze, E.M., Tweten, R.K., Whisstock, J.C., Topf, M., Dunstone, M.A., Saibil, H.R.
PDB entry 4v3n: Membrane bound pleurotolysin prepore (TMH2 strand lock) trapped with engineered disulphide cross-link
Classification: TRANSPORT PROTEIN
Source organism: PLEUROTUS OSTREATUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 14 Å
Deposited: 2014-10-20
Authors: Lukoyanova, N., Kondos, S.C., Farabella, I., Law, R.H.P., Reboul, C.F., Caradoc-Davies, T.T., Spicer, B.A., Kleifeld, O., Perugini, M., Ekkel, S., Hatfaludi, T., Oliver, K., Hotze, E.M., Tweten, R.K., Whisstock, J.C., Topf, M., Dunstone, M.A., Saibil, H.R.
PDB entry 4v3o: Designed armadillo repeat protein with 5 internal repeats, 2nd generation C-cap and 3rd generation N-cap.
Classification: DE NOVO PROTEIN
Source organism: SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-10-20
Authors: Reichen, C., Madhurantakam, C., Pluckthun, A., Mittl, P.
PDB entry 4v3p: The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes
Classification: RIBOSOME
Source organism: Triticum aestivum
Experimental method: ELECTRON MICROSCOPY
Resolution: 34 Å
Deposited: 2014-10-20
Authors: Myasnikov, A.G., Afonina, Z.A., Menetret, J.F., Shirokov, V.A., Spirin, A.S., Klaholz, B.P.
PDB entry 4v3q: Designed armadillo repeat protein with 4 internal repeats, 2nd generation C-cap and 3rd generation N-cap.
Classification: DE NOVO PROTEIN
Source organism: SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-10-20
Authors: Reichen, C., Madhurantakam, C., Pluckthun, A., Mittl, P.
PDB entry 4v3r: Designed armadillo repeat protein with 5 internal repeats, 2nd generation C-cap and 3rd generation N-cap.
Classification: DE NOVO PROTEIN
Source organism: SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-10-20
Authors: Reichen, C., Madhurantakam, C., Pluckthun, A., Mittl, P.
PDB entry 4v3u: Structure of human nNOS R354A G357D mutant heme domain in complex with N-2-(2-(1H-imidazol-1-yl)pyrimidin-4-yl)ethyl-3-(pyridin-3-yl) propan-1-amine
Classification: OXIDOREDUCTASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-10-20
Authors: Li, H., Poulos, T.L.
PDB entry 4v3v: Structure of rat neuronal nitric oxide synthase heme domain in complex with N-(2-(1H-imidazol-1-yl)-4-pyrimidylmethyl)-3-(3- fluorophenyl)propan-1-amine
Classification: OXIDOREDUCTASE
Source organism: RATTUS NORVEGICUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2014-10-20
Authors: Li, H., Poulos, T.L.
PDB entry 4v3w: Structure of rat neuronal nitric oxide synthase heme domain in complex with 2-(2-(1H-imidazol-1-yl)pyrimidin-4-yl)-N-(3- fluorophenethyl)ethan-1-amine
Classification: OXIDOREDUCTASE
Source organism: RATTUS NORVEGICUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2014-10-20
Authors: Li, H., Poulos, T.L.
PDB entry 4v3x: Structure of rat neuronal nitric oxide synthase heme domain in complex with N-2-(2-(1H-imidazol-1-yl)pyrimidin-4-yl)ethyl-3-(3- fluorophenyl)propan-1-amine
Classification: OXIDOREDUCTASE
Source organism: RATTUS NORVEGICUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2014-10-20
Authors: Li, H., Poulos, T.L.
PDB entry 4v3y: Structure of rat neuronal nitric oxide synthase heme domain in complex with N-2-(2-(1H-imidazol-1-yl)pyrimidin-4-yl)ethyl-3-(3- chlorophenyl)propan-1-amine
Classification: OXIDOREDUCTASE
Source organism: RATTUS NORVEGICUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.962 Å
Deposited: 2014-10-20
Authors: Li, H., Poulos, T.L.
PDB entry 4v3z: Structure of rat neuronal nitric oxide synthase heme domain in complex with 2-(2-(1H-imidazol-1-yl)pyrimidin-4-yl)-N-(2-(3- fluorophenyl)cyclopropylmethyl)ethan-1-amine
Classification: OXIDOREDUCTASE
Source organism: RATTUS NORVEGICUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.052 Å
Deposited: 2014-10-20
Authors: Li, H., Poulos, T.L.
PDB entry 4v40: BETA-GALACTOSIDASE
Classification: HYDROLASE (O-GLYCOSYL)
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1994-07-18
Authors: Jacobson, R.H., Zhang, X., Dubose, R.F., Matthews, B.W.
PDB entry 4v41: E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC)
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2000-06-07
Authors: Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.
PDB entry 4v42: Crystal structure of the ribosome at 5.5 A resolution.
Classification: RIBOSOME
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 5.5 Å
Deposited: 2001-03-30
Authors: Yusupov, M.M., Yusupova, G.Z., Baucom, A., Lieberman, K., Earnest, T.N., Cate, J.H.D., Noller, H.F.
PDB entry 4v43: Structural and mechanistic basis for allostery in the bacterial chaperonin GroEL
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2002-01-02
Authors: Wang, J.
PDB entry 4v44: E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2001-09-13
Authors: Juers, D.H., McCarter, J.D., Withers, S.G., Matthews, B.W.
PDB entry 4v45: E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2001-09-13
Authors: Juers, D.H., McCarter, J.D., Withers, S.G., Matthews, B.W.
PDB entry 4v46: Crystal structure of the BAFF-BAFF-R complex
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2003-03-23
Authors: Kim, H.M., Yu, K.S., Lee, M.E., Shin, D.R., Kim, Y.S., Paik, S.G., Yoo, O.J., Lee, H., Lee, J.-O.
PDB entry 4v47: Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.3 Å
Deposited: 2003-05-06
Authors: Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
PDB entry 4v48: Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.5 Å
Deposited: 2003-05-06
Authors: Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
PDB entry 4v49: Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 8.7 Å
Deposited: 2003-06-13
Authors: Vila-Sanjurjo, A., Ridgeway, W.K., Seymaner, V., Zhang, W., Santoso, S., Yu, K., Cate, J.H.D.
PDB entry 4v4a: Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 9.5 Å
Deposited: 2003-06-13
Authors: Vila-Sanjurjo, A., Ridgeway, W.K., Seymaner, V., Zhang, W., Santoso, S., Yu, K., Cate, J.H.D.
PDB entry 4v4b: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map.
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.7 Å
Deposited: 2004-01-06
Authors: Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J.
PDB entry 4v4c: Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici
Classification: OXIDOREDUCTASE
Source organism: Pelobacter acidigallici
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2004-06-02
Authors: Messerschmidt, A., Niessen, H., Abt, D., Einsle, O., Schink, B., Kroneck, P.M.H.
PDB entry 4v4d: Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici complexed with pyrogallol
Classification: OXIDOREDUCTASE
Source organism: Pelobacter acidigallici
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2004-06-02
Authors: Messerschmidt, A., Niessen, H., Abt, D., Einsle, O., Schink, B., Kroneck, P.M.H.
PDB entry 4v4e: Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici complexed with inhibitor 1,2,4,5-tetrahydroxy-benzene
Classification: OXIDOREDUCTASE
Source organism: Pelobacter acidigallici
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2004-06-02
Authors: Messerschmidt, A., Niessen, H., Abt, D., Einsle, O., Schink, B., Kroneck, P.M.H.
PDB entry 4v4f: The structure of the trp RNA-binding attenuation protein (TRAP) bound to a RNA molecule containing UAGAU repeats
Classification: RNA BINDING PROTEIN
Source organism: BACILLUS STEAROTHERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2003-12-08
Authors: Hopcroft, N.H., Manfredo, A., Wendt, A.L., Brzozowski, A.M., Gollnick, P., Antson, A.A.
PDB entry 4v4g: Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 11.5 Å
Deposited: 2004-10-06
Authors: Vila-Sanjurjo, A., Schuwirth, B.S., Hau, C.W., Cate, J.H.
PDB entry 4v4h: Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2006-08-04
Authors: Schuwirth, B.S., Vila-Sanjurjo, A., Cate, J.H.D.
PDB entry 4v4i: Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.71 Å
Deposited: 2007-02-15
Authors: Korostelev, A., Trakhanov, S., Laurberg, M., Noller, H.F.
PDB entry 4v4j: Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Classification: RIBOSOME
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.83 Å
Deposited: 2007-07-18
Authors: Korostelev, A., Trakhanov, S., Asahara, H., Laurberg, M., Noller, H.F.
PDB entry 4v4k: Bacteriophage P22 Portal Protein bound to middle Tail Factor GP4. This file contain the second biological assembly
Classification: VIRAL PROTEIN
Source organism: ENTEROBACTERIA PHAGE P22
Experimental method: X-RAY DIFFRACTION
Resolution: 3.251 Å
Deposited: 2010-04-19
Authors: Olia, A.S., Cingolani, G.
PDB entry 4v4l: Structure of the Drosophila apoptosome
Classification: APOPTOSIS
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2010-10-04
Authors: Yuan, S., Topf, M., Akey, C.W., Ludtke, S.J.
PDB entry 4v4m: 1.45 Angstrom Structure of STNV coat protein
Classification: VIRUS
Source organism: Tobacco necrosis satellite virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2011-04-28
Authors: Lane, S.W., Dennis, C.A., Lane, C.L., Trinh, C.H., Rizkallah, P.J., Stockley, P.G., Phillips, S.E.V.
PDB entry 4v4n: Structure of the Methanococcus jannaschii ribosome-SecYEBeta channel complex
Classification: RIBOSOME/PROTEIN TRANSPORT
Source organism: Methanococcus  jannaschii; Methanococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2013-06-17
Authors: Menetret, J.F., Park, E., Gumbart, J.C., Ludtke, S.J., Li, W., Whynot, A., Rapoport, T.A., Akey, C.W.
PDB entry 4v4o: Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
Classification: CHAPERONE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2004-05-23
Authors: Shimamura, T., Koike-Takeshita, A., Yokoyama, K., Masui, R., Murai, N., Yoshida, M., Taguchi, H., Iwata, S.
PDB entry 4v4p: Crystal structure of 70S ribosome with thrS operator and tRNAs.
Classification: RIBOSOME
Source organism: Thermus thermophilus; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 5.5 Å
Deposited: 2005-01-19
Authors: Jenner, L., Romby, P., Rees, B., Schulze-Briese, C., Springer, M., Ehresmann, C., Ehresmann, B., Moras, D., Yusupova, G., Yusupov, M.
PDB entry 4v4q: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2005-08-30
Authors: Schuwirth, B.S., Borovinskaya, M.A., Hau, C.W., Zhang, W., Vila-Sanjurjo, A., Holton, J.M., Cate, J.H.D.
PDB entry 4v4r: Crystal structure of the whole ribosomal complex.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 5.9 Å
Deposited: 2005-09-30
Authors: Petry, S., Brodersen, D.E., Murphy IV, F.V., Dunham, C.M., Selmer, M., Tarry, M.J., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v4s: Crystal structure of the whole ribosomal complex.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 6.76 Å
Deposited: 2005-10-12
Authors: Petry, S., Brodersen, D.E., Murphy IV, F.V., Dunham, C.M., Selmer, M., Tarry, M.J., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v4t: Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 6.46 Å
Deposited: 2005-10-12
Authors: Petry, S., Brodersen, D.E., Murphy IV, F.V., Dunham, C.M., Selmer, M., Tarry, M.J., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v4u: The quasi-atomic model of Human Adenovirus type 5 capsid
Classification: VIRUS
Source organism: HUMAN ADENOVIRUS 2; HUMAN ADENOVIRUS TYPE 5; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2005-03-03
Authors: Fabry, C.M.S., Rosa-Calatrava, M., Conway, J.F., Zubieta, C., Cusack, S., Ruigrok, R.W.H., Schoehn, G.
PDB entry 4v4v: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2006-05-09
Authors: Mitra, K., Frank, J.
PDB entry 4v4w: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2006-05-09
Authors: Mitra, K., Frank, J.
PDB entry 4v4x: Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 5 Å
Deposited: 2006-06-27
Authors: Jenner, L., Yusupova, G., Rees, B., Moras, D., Yusupov, M.
PDB entry 4v4y: Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 5.5 Å
Deposited: 2006-06-27
Authors: Jenner, L., Yusupova, G., Rees, B., Moras, D., Yusupov, M.
PDB entry 4v4z: 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.51 Å
Deposited: 2006-06-27
Authors: Jenner, L., Yusupova, G., Rees, B., Moras, D., Yusupov, M.
PDB entry 4v50: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2006-08-16
Authors: Berk, V., Zhang, W., Pai, R.D., Cate, J.H.D.
PDB entry 4v51: Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin
Classification: RIBOSOME
Source organism: THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-07-31
Authors: Selmer, M., Dunham, C.M., Murphy, F.V., Weixlbaumer, A., Petry, S., Weir, J.R., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v52: Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2007-06-15
Authors: Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.
PDB entry 4v53: Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.54 Å
Deposited: 2007-06-16
Authors: Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.
PDB entry 4v54: Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2007-06-16
Authors: Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.
PDB entry 4v55: Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2007-06-17
Authors: Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.
PDB entry 4v56: Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.93 Å
Deposited: 2007-07-21
Authors: Borovinskaya, M.A., Shoji, S., Holton, J.M., Fredrick, K., Cate, J.H.D.
PDB entry 4v57: Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2007-07-21
Authors: Borovinskaya, M.A., Shoji, S., Holton, J.M., Fredrick, K., Cate, J.H.D.
PDB entry 4v58: Crystal structure of fatty acid synthase from thermomyces lanuginosus at 3.1 angstrom resolution.
Classification: TRANSFERASE
Source organism: THERMOMYCES LANUGINOSUS
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2007-03-09
Authors: Jenni, S., Leibundgut, M., Boehringer, D., Frick, C., Mikolasek, B., Ban, N.
PDB entry 4v59: Crystal structure of fatty acid synthase complexed with nadp+ from thermomyces lanuginosus at 3.1 angstrom resolution.
Classification: TRANSFERASE
Source organism: THERMOMYCES LANUGINOSUS
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2007-03-09
Authors: Jenni, S., Leibundgut, M., Boehringer, D., Frick, C., Mikolasek, B., Ban, N.
PDB entry 4v5a: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2007-06-28
Authors: Weixlbaumer, A., Petry, S., Dunham, C.M., Selmer, M., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v5b: Structure of PDF binding helix in complex with the ribosome.
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å
Deposited: 2007-11-22
Authors: Bingel-Erlenmeyer, R., Kohler, R., Kramer, G., Sandikci, A., Antolic, S., Maier, T., Schaffitzel, C., Wiedmann, B., Bukau, B., Ban, N.
PDB entry 4v5c: Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Classification: RIBOSOME
Source organism: Escherichia coli K-12; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2009-03-24
Authors: Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v5d: Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2009-03-24
Authors: Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v5e: Insights into translational termination from the structure of RF2 bound to the ribosome
Classification: RIBOSOME
Source organism: Escherichia coli K-12; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2009-04-30
Authors: Weixlbaumer, A., Jin, H., Neubauer, C., Voorhees, R.M., Petry, S., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v5f: The structure of the ribosome with elongation factor G trapped in the post-translocational state
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2009-09-01
Authors: Gao, Y.-G., Selmer, M., Dunham, C.M., Weixlbaumer, A., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v5g: The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2009-09-01
Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
PDB entry 4v5h: E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2009-10-26
Authors: Seidelt, B., Innis, C.A., Wilson, D.N., Gartmann, M., Armache, J., Villa, E., Trabuco, L.G., Becker, T., Mielke, T., Schulten, K., Steitz, T.A., Beckmann, R.
PDB entry 4v5i: Structure of the Phage P2 Baseplate in its Activated Conformation with Ca
Classification: VIRAL PROTEIN
Source organism: LACTOCOCCUS PHAGE P2
Experimental method: X-RAY DIFFRACTION
Resolution: 5.464 Å
Deposited: 2010-02-05
Authors: Sciara, G., Bebeacua, C., Bron, P., Tremblay, D., Ortiz-Lombardia, M., Lichiere, J., van Heel, M., Campanacci, V., Moineau, S., Cambillau, C.
PDB entry 4v5j: Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-03-24
Authors: Jin, H., Kelley, A.C., Loakes, D., Ramakrishnan, V.
PDB entry 4v5k: Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli ; Escherichia coli K-12; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2010-05-29
Authors: Ng, C.L., Lang, K., Meenan, N.A.G., Sharma, A., Kelley, A.C., Kleanthous, C., Ramakrishnan, V.
PDB entry 4v5l: The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-09-02
Authors: Voorhees, R.M., Schmeing, T.M., Ramakrishnan, V.
PDB entry 4v5m: tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.8 Å
Deposited: 2010-10-01
Authors: Ratje, A.H., Loerke, J., Mikolajka, A., Bruenner, M., Hildebrand, P.W., Starosta, A.L., Doenhoefer, A., Connell, S.R., Fucini, P., Mielke, T., Whitford, P.C., Onuchic, J.N., Yu, Y., Sanbonmatsu, K.Y., Hartmann, R.K., Penczek, P.A., Wilson, D.N., Spahn, C.M.T.
PDB entry 4v5n: tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2010-10-21
Authors: Ratje, A.H., Loerke, J., Mikolajka, A., Bruenner, M., Hildebrand, P.W., Starosta, A.L., Doenhoefer, A., Connell, S.R., Fucini, P., Mielke, T., Whitford, P.C., Onuchic, J.N., Yu, Y., Sanbonmatsu, K.Y., Hartmann, R.K., Penczek, P.A., Wilson, D.N., Spahn, C.M.T.
PDB entry 4v5o: CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Classification: RIBOSOME
Source organism: TETRAHYMENA THERMOPHILA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.93 Å
Deposited: 2010-11-26
Authors: Rabl, J., Leibundgut, M., Ataide, S.F., Haag, A., Ban, N.
PDB entry 4v5p: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-12-07
Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
PDB entry 4v5q: The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-12-07
Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.