LiteFold/PDB huggingface dataset:
PDB entry 5v34: Ethylene forming enzyme in complex with manganese, malic acid and L-arginine
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas savastanoi pv. phaseolicola
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2017-03-06
Authors: Fellner, M., Martinez, S., Hu, J., Hausinger, R.P.
PDB entry 5v35: Crystal structure of V71F mutant of the FKBP domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) complexed with S-farnesyl-L-cysteine methyl ester
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-03-06
Authors: Yadav, R.P., Gakhar, L., Liping, Y., Artemyev, N.O.
PDB entry 5v36: 1.88 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus mutans UA159 in Complex with FAD
Classification: HYDROLASE,OXIDOREDUCTASE
Source organism: Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2017-03-06
Authors: Minasov, G., Shuvalova, L., Dubrovska, I., Kiryukhina, O., Grimshaw, S., Kwon, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 5v37: Crystal structure of SMYD3 with SAM and EPZ028862
Classification: TRANSFERASE/TRANSFERASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2017-03-06
Authors: Boriack-Sjodin, P.A.
PDB entry 5v38: Crystal Structure of The Receptor-binding Domain of Botulinum Neurotoxin Type HA
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-03-06
Authors: Yao, G., Lam, K.-H., Jin, R.
PDB entry 5v39: Crystal structure of human vitamin D receptor ligand binding domain in complex with a VDRM
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-03-06
Authors: Wang, Y., Pelletier, L.
PDB entry 5v3a: Novel Structural Insights into GDP-Mediated Regulation of Acyl-CoA Thioesterases
Classification: HYDROLASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-03-06
Authors: Khandokar, Y.B., Srivastava, P., Forwood, J.K.
PDB entry 5v3b: Human A20 OTU domain (WT) with acetamidylated C103
Classification: HYDROLASE,LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-03-07
Authors: Langley, D.B., Christ, D., Grey, S.
PDB entry 5v3c: Crystal structure of TGT in complex with 4-(aminomethane)cyclohexane-1-carboxylic acid
Classification: TRANSFERASE
Source organism: Zymomonas mobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.419 Å
Deposited: 2017-03-07
Authors: Hassaan, E., Heine, A., Klebe, G.
PDB entry 5v3d: Crystal structure of fosfomycin resistance protein from Klebsiella pneumoniae with bound fosfomycin
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.539 Å
Deposited: 2017-03-07
Authors: Klontz, E., Guenther, S., Silverstein, Z., Sundberg, E.
PDB entry 5v3f: Co-crystal structure of the fluorogenic RNA Mango
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-03-07
Authors: Trachman, R.J., Ferre-D'Amare, A.R.
PDB entry 5v3g: PRDM9-allele-C ZnF8-13
Classification: transferase/dna
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.416 Å
Deposited: 2017-03-07
Authors: Patel, A., Cheng, X.
PDB entry 5v3h: Crystal structure of SMYD2 with SAM and EPZ033294
Classification: TRANSFERASE/TRANSFERASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2017-03-07
Authors: Boriack-Sjodin, P.A.
PDB entry 5v3i: Crystal structure of the VS ribozyme - wild-type C634
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.293 Å
Deposited: 2017-03-07
Authors: DasGupta, S., Suslov, N.B., Piccirilli, J.A.
PDB entry 5v3j: mouseZFP568-ZnF1-10 in complex with DNA
Classification: transferase/dna
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.064 Å
Deposited: 2017-03-07
Authors: Patel, A., Cheng, X.
PDB entry 5v3m: mouseZFP568-ZnF1-11 in complex with DNA
Classification: dna binding protein/dna
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.091 Å
Deposited: 2017-03-07
Authors: Patel, A., Cheng, X.
PDB entry 5v3n: Structure of S. cerevisiae Ulp2-Tof2-Csm1 complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae x Saccharomyces kudriavzevii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2017-03-07
Authors: SIngh, N., Corbett, K.D.
PDB entry 5v3o: Cereblon in complex with DDB1 and CC-220
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2017-03-07
Authors: Matyskiela, M., Pagarigan, B., Chamberlain, P.
PDB entry 5v3p: Human A20 OTU domain (I325N) with acetamidylated C103
Classification: HYDROLASE,LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-03-07
Authors: Langley, D.B., Christ, D., Grey, S.
PDB entry 5v3q: Human GSTO1-1 complexed with ML175
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2017-03-07
Authors: Oakley, A.J.
PDB entry 5v3r: CHMP4C in complex with ALIX BRO1
Classification: CELL DIVISION, TRANSPORT PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.906 Å
Deposited: 2017-03-08
Authors: Wenzel, D.M., Alam, S.L., Sundquist, W.I.
PDB entry 5v3s: Crystal structure of IP-1A from Alcaligenes faecalis at 1.8A resolution
Classification: TOXIN
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-03-08
Authors: Yalpani, N., Altier, D., Guan, R., Montelione, G.
PDB entry 5v3t: Crystal Structure of the Group II Truncated Hemoglobin from Bacillus Anthracis
Classification: OXYGEN TRANSPORT
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.899 Å
Deposited: 2017-03-08
Authors: Varnado, C.L., SoRelle, E., Soman, J., Olson, J.S.
PDB entry 5v3u: Crystal Structure of the Group II Truncated Hemoglobin from Bacillus Anthracis: Trp90Leu mutant
Classification: OXYGEN TRANSPORT
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-03-08
Authors: Varnado, C.L., SoRelle, E., Soman, J., Olson, J.S.
PDB entry 5v3v: Crystal Structure of the Group II Truncated Hemoglobin from Bacillus Anthracis: Tyr26Ala Mutant
Classification: OXYGEN TRANSPORT
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2017-03-08
Authors: Varnado, C.L., SoRelle, E., Soman, J., Olson, J.S.
PDB entry 5v3w: Crystal Structure of the Apo form of Thioesterase domain of Mtb Pks13
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.723 Å
Deposited: 2017-03-08
Authors: Aggarwal, A., Sacchettini, J.C.
PDB entry 5v3x: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor TAM1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.936 Å
Deposited: 2017-03-08
Authors: Aggarwal, A., Sacchettini, J.C.
PDB entry 5v3y: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor TAM16
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2017-03-08
Authors: Aggarwal, A., Sacchettini, J.C.
PDB entry 5v3z: Crystal Structure of the D1607N mutant form of Thioesterase domain of Mtb Pks13
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.881 Å
Deposited: 2017-03-08
Authors: Aggarwal, A., Sacchettini, J.C.
PDB entry 5v40: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor TAM6
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.991 Å
Deposited: 2017-03-08
Authors: Aggarwal, A., Sacchettini, J.C.
PDB entry 5v41: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor TAM5
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.051 Å
Deposited: 2017-03-08
Authors: Aggarwal, A., Sacchettini, J.C.
PDB entry 5v42: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor TAM3
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.987 Å
Deposited: 2017-03-08
Authors: Aggarwal, A., Sacchettini, J.C.
PDB entry 5v43: Engineered human IgG Fc domain aglyco801
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2017-03-08
Authors: Yan, W., Marshall, N., Zhang, Y.J.
PDB entry 5v44: Crystal structure of the SR1 domain of human sacsin
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2017-03-08
Authors: Menade, M., Kozlov, G., Gehring, K.
PDB entry 5v45: Crystal structure of the F270M, K291M, L318M mutant of SR1 domain of human sacsin
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2017-03-08
Authors: Menade, M., Kozlov, G., Gehring, K.
PDB entry 5v46: Crystal structure of the I113M, F270M, K291M, L308M mutant of SR1 domain of human sacsin
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-03-08
Authors: Menade, M., Kozlov, G., Gehring, K.
PDB entry 5v47: Crystal structure of the SR1 domain of lizard sacsin
Classification: CHAPERONE
Source organism: Anolis carolinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2017-03-08
Authors: Pan, T., Menade, M., Kozlov, G., Gehring, K.
PDB entry 5v48: Soluble rabbit neprilysin in complex with thiorphan
Classification: HYDROLASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9965 Å
Deposited: 2017-03-08
Authors: Labiuk, S.L., Grochulski, P., Sygusch, J.
PDB entry 5v49: Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1917)
Classification: Ligase/Ligase Inhibitor
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-03-08
Authors: Barros-Alvarez, X., Hol, W.G.J.
PDB entry 5v4a: A New Glycosyltransferase (DUF1792) from Streptococcus sanguinis
Classification: TRANSFERASE
Source organism: Streptococcus sanguinis (strain SK36)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-03-08
Authors: Zhang, H., Wu, H.
PDB entry 5v4b: Crystal structure of the Skp1-FBXW7-DISC1 complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-03-08
Authors: Li, Y., Baillie, G.S., Hao, B.
PDB entry 5v4c: Peptide 38136 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoites (CelTOS)
Classification: CELL INVASION
Experimental method: SOLUTION NMR
Deposited: 2017-03-09
Authors: Bermudez, A., Patarroyo, M.E.
PDB entry 5v4d: Crystal Structure of the Protein of Unknown Function of the Conserved Rid Protein Family YyfA from Yersinia pestis
Classification: Structural genomics, unknown function
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-03-09
Authors: Kim, Y., Chhor, G., Endres, M., Krishnan, A., Babnigg, G., Schneewind, O., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 5v4e: Engineered human IgG Fc domain glyco801 (Fc801)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.216 Å
Deposited: 2017-03-09
Authors: Yan, W., Marshall, N., Zhang, Y.J.
PDB entry 5v4f: Crystal Structure of the Protein of Unknown Function of the Conserved Rid Protein Family YyfB from Yersinia pestis
Classification: Structural genomics, unknown function
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.001 Å
Deposited: 2017-03-09
Authors: Kim, Y., Chhor, G., Endres, M., Krishnan, A., Babnigg, G., Schneewind, O., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 5v4g: Ruthenium(II)(cymene)(chlorido)2-lysozyme adduct with two binding sites
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2017-03-09
Authors: Sullivan, M.P., Hartinger, C.G., Goldstone, D.C.
PDB entry 5v4h: Ruthenium(II)(cymene)(chlorido)2-lysozyme adduct formed when ruthenium(II)(cymene)(bromido)2 underwent ligand exchange, resulting in one binding site
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2017-03-09
Authors: Sullivan, M.P., Hartinger, C.G., Goldstone, D.C.
PDB entry 5v4i: Osmium(II)(cymene)(chlorido)2-lysozyme adduct with one binding site
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-03-09
Authors: Sullivan, M.P., Hartinger, C.G., Goldstone, D.C.
PDB entry 5v4k: Crystal structure of NEDD4 LIR-fused human LC3B_2-119
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2017-03-09
Authors: Qiu, Y., Zheng, Y., Schulman, B.
PDB entry 5v4l: Cryptococcus neoformans adenylosuccinate lyase
Classification: LYASE
Source organism: Cryptococcus neoformans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-03-09
Authors: Chitty, J., Williams, S.J., Kobe, B., Fraser, J.A.
PDB entry 5v4m: Structure of HLA-DR15 with bound alpha3(135-145) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-03-10
Authors: Petersen, J., Rossjohn, J.
PDB entry 5v4n: Structure of HLA-DR1 with bound alpha3(135-145) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.405 Å
Deposited: 2017-03-10
Authors: Petersen, J., Rossjohn, J.
PDB entry 5v4o: Crystal structure of the D141A/Q233E/N240D variant of catalase-peroxidase from B. pseudomallei
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei (strain 1710b)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2017-03-10
Authors: Loewen, P.C.
PDB entry 5v4p: Saccharomyces cerevisiae OYE 3 soaked with p-hydroxybenzaldehyde
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2017-03-10
Authors: Stewart, J., Powell III, R.W.
PDB entry 5v4q: Crystal Structure of human GGT1 in complex with DON
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-03-10
Authors: Terzyan, S., Hanigan, M.
PDB entry 5v4r: Crystal structure of LARP1-unique domain DM15 bound to m7GTP
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2017-03-10
Authors: Berman, A.J., Lahr, R.M.
PDB entry 5v4s: CryoEM Structure of a Prokaryotic Cyclic Nucleotide-Gated Ion Channel
Classification: TRANSPORT PROTEIN
Source organism: Leptospira licerasiae serovar Varillal str. VAR 010
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2017-03-10
Authors: James, Z.M., Borst, A.J., Haitin, Y., Frenz, B., DiMaio, F., Zagotta, W.N., Veesler, D.
PDB entry 5v4t: Protein 84 with aldehyde deformylating oxygenase activity from Sulfolobus tokodaii (orthorhombic form)
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-03-10
Authors: Wilson, D.K., Mak, W.S., Siegel, J.B.
PDB entry 5v4u: Solution structure of VKK38 bound to plasminogen kringle 2
Classification: BLOOD CLOTTING
Source organism: Streptococcus pyogenes
Experimental method: SOLUTION NMR
Deposited: 2017-03-10
Authors: Yuan, Y., Castellino, F.
PDB entry 5v4v: Saccharomyces cerevisiae Old Yellow Enzyme 3
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.798 Å
Deposited: 2017-03-10
Authors: Stewart, J.D.
PDB entry 5v4w: Human glucokinase in complex with novel indazole activator.
Classification: transferase/transferase activator
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2017-03-10
Authors: Skene, R.J., Hosfield, D.J.
PDB entry 5v4x: Human glucokinase in complex with novel pyrazole activator.
Classification: transferase/transferase activator
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2017-03-10
Authors: Skene, R.J., Hosfiled, D.J.
PDB entry 5v4y: X-ray crystal structure of wild type HIV-1 protease in complex with GRL-09510
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-03-11
Authors: Yedidi, R.S., Delino, N.S., Das, D., Kaufman, J.D., Wingfield, P.T., Ghosh, A.K., Mitsuya, H.
PDB entry 5v50: Crystal Structure of MpPR-1i
Classification: LIPID BINDING PROTEIN
Source organism: Moniliophthora perniciosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2017-03-12
Authors: Luo, Z., Asojo, O.
PDB entry 5v51: Crystal Structure of MpPR-1i Soaked with Selenourea for 10 min
Classification: LIPID BINDING PROTEIN
Source organism: Moniliophthora perniciosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2017-03-12
Authors: Luo, Z., Asojo, O.
PDB entry 5v52: Structure of TIGIT bound to nectin-2 (CD112)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2017-03-13
Authors: Deuss, F.A., Gully, B.S., Rossjohn, J., Berry, R.
PDB entry 5v53: Crystal structure of the D141A/Q233E/N240D variant of catalase-peroxidase from B. pseudomallei with acetate bound
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei (strain 1710b)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-03-13
Authors: Loewen, P.C.
PDB entry 5v54: Crystal structure of 5-HT1B receptor in complex with methiothepin
Classification: ELECTRON TRANSPORT
Source organism: Homo sapiens; Spodoptera frugiperda
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2017-03-13
Authors: Yin, W.C., Zhou, X.E., Yang, D., de Waal, P., Wang, M.T., Dai, A., Cai, X., Huang, C.Y., Liu, P., Yin, Y., Liu, B., Caffrey, M., Melcher, K., Xu, Y., Wang, M.W., Xu, H.E., Jiang, Y.
PDB entry 5v56: 2.9A XFEL structure of the multi-domain human smoothened receptor (with E194M mutation) in complex with TC114
Classification: MEMBRANE PROTEIN
Source organism: Desulfovibrio vulgaris; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-03-13
Authors: Zhang, X., Zhao, F., Wu, Y., Yang, J., Han, G.W., Zhao, S., Ishchenko, A., Ye, L., Lin, X., Ding, K., Dharmarajan, V., Griffin, P.R., Gati, C., Nelson, G., Hunter, M.S., Hanson, M.A., Cherezov, V., Stevens, R.C., Tan, W., Tao, H., Xu, F.
PDB entry 5v57: 3.0A SYN structure of the multi-domain human smoothened receptor in complex with TC114
Classification: MEMBRANE PROTEIN
Source organism: Desulfovibrio vulgaris; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-03-13
Authors: Zhang, X., Zhao, F., Wu, Y., Yang, J., Han, G.W., Zhao, S., Ishchenko, A., Ye, L., Lin, X., Ding, K., Dharmarajan, V., Griffin, P.R., Gati, C., Nelson, G., Hunter, M.S., Hanson, M.A., Cherezov, V., Stevens, R.C., Tan, W., Tao, H., Xu, F.
PDB entry 5v58: Crystal structure of human prolyl-tRNA synthetase in complex with Aze-SA
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2017-03-13
Authors: Zhou, H., Song, Y., Schimmel, P.
PDB entry 5v59: Crystal structure of catalytic fragment of human AlaRS in complex with Aze-SA
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2017-03-13
Authors: Zhou, H., Song, Y., Schimmel, P.
PDB entry 5v5b: KVQIINKKLD, Structure of the amyloid spine from microtubule associated protein tau Repeat 2
Classification: STRUCTURAL PROTEIN
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.5 Å
Deposited: 2017-03-13
Authors: Seidler, P.M., Sawaya, M.R., Rodriguez, J.A., Eisenberg, D.S., Cascio, D., Boyer, D.R.
PDB entry 5v5c: VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2
Classification: STRUCTURAL PROTEIN
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.25 Å
Deposited: 2017-03-14
Authors: Seidler, P.M., Sawaya, M.R., Rodriguez, J.A., Eisenberg, D.S., Cascio, D., Boyer, D.R.
PDB entry 5v5d: Room temperature (280K) crystal structure of Kaposi's sarcoma-associated herpesvirus protease in complex with allosteric inhibitor (compound 250)
Classification: VIRAL PROTEIN / INHIBITOR
Source organism: Human herpesvirus 8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.104 Å
Deposited: 2017-03-14
Authors: Thompson, M.C., Acker, T.M., Fraser, J.S., Craik, C.S.
PDB entry 5v5e: Room temperature (280K) crystal structure of Kaposi's sarcoma-associated herpesvirus protease in complex with allosteric inhibitor (compound 733)
Classification: VIRAL PROTEIN / INHIBITOR
Source organism: Human herpesvirus 8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.299 Å
Deposited: 2017-03-14
Authors: Thompson, M.C., Acker, T.M., Fraser, J.S., Craik, C.S.
PDB entry 5v5f: Crystal structure of RICE1 (PNT2)
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.945 Å
Deposited: 2017-03-14
Authors: Li, P.
PDB entry 5v5g: OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.4
Classification: hydrolase, transferase
Source organism: Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-03-14
Authors: Khare, B., Mark, B.L.
PDB entry 5v5h: OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.2
Classification: hydrolase, transferase
Source organism: Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-03-14
Authors: Khare, B., Mark, B.L.
PDB entry 5v5i: OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.1
Classification: hydrolase, transferase
Source organism: Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2017-03-14
Authors: Khare, B., Mark, B.L.
PDB entry 5v5j: oxyferrous Dehaloperoxidase B
Classification: OXYGEN TRANSPORT
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.814 Å
Deposited: 2017-03-14
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 5v5k: Crystal structure of ferritin E65R mutant from hyperthermophilic archaeon Archaeoglobus fulgidus
Classification: OXIDOREDUCTASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2017-03-14
Authors: Roose, B.W., Pulsipher, K.W.
PDB entry 5v5l: Crystal structure of HLA-B*5801 complex with HIV-1 gag derived peptide TW10
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2017-03-14
Authors: Li, X., Wang, J.-H.
PDB entry 5v5m: Crystal structure of HLA-B*5701 complex with HIV-1 gag derived peptide TW10
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.878 Å
Deposited: 2017-03-14
Authors: Li, X., Wang, J.-H.
PDB entry 5v5n: Crystal structure of Takinib bound to TAK1
Classification: TRANSFERASE/TRANSFERASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.006 Å
Deposited: 2017-03-14
Authors: Gurbani, D., Westover, K., Bera, A.K.
PDB entry 5v5o: Structure of NLS2K of influenza A virus nucleoprotein bound to importin alpha
Classification: VIRAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.243 Å
Deposited: 2017-03-14
Authors: Sankhala, R.S., Lokareddy, R.K., Cingolani, G.
PDB entry 5v5p: Structure of NLS2R of influenza A virus nucleoprotein bound to importin alpha
Classification: VIRAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2017-03-14
Authors: Sankhala, R.S., Lokareddy, R.K., Cingolani, G.
PDB entry 5v5q: Dehaloperoxidase B L9I mutant
Classification: OXYGEN TRANSPORT
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.961 Å
Deposited: 2017-03-14
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 5v5r: Dehaloperoxidase A I9L mutant
Classification: OXYGEN TRANSPORT
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2017-03-15
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 5v5s: multi-drug efflux; membrane transport; RND superfamily; Drug resistance
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2017-03-15
Authors: wang, Z., fan, G., Hryc, C.F., Blaza, J.N., Serysheva, I.I., Schmid, M.F., Chiu, W., Luisi, B.F., Du, D.
PDB entry 5v5t: Crystal structure of leucine-rich protein regulator, ElrR, from Enterococcus faecalis
Classification: TRANSCRIPTION
Source organism: Enterococcus faecalis (strain ATCC 700802 / V583)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2017-03-15
Authors: De Groote, M.C.R., Camargo, I.L., Serror, P., Horjales, E.
PDB entry 5v5u: Crystal structure of leucine-rich protein regulator, ElrR, from Enterococcus faecalis
Classification: TRANSCRIPTION
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.278 Å
Deposited: 2017-03-15
Authors: De Groote, M.C.R., Camargo, I.L., Serror, P., Horjales, E.
PDB entry 5v5v: Complex of NLGN2 with MDGA1 Ig1-Ig2
Classification: CELL ADHESION
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.11 Å
Deposited: 2017-03-15
Authors: Gangwar, S.P., Machius, M., Rudenko, G.
PDB entry 5v5w: Molecular Mechanism of MDGA1: Regulation of Neuroligin 2:Neurexin Trans-synaptic Bridges
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.718 Å
Deposited: 2017-03-15
Authors: Machius, M., Gangwar, S.P., Rudenko, G.
PDB entry 5v5x: Protocadherin gammaB7 EC3-6 cis-dimer structure
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2017-03-15
Authors: Goodman, K.M., Mannepalli, S., Bahna, F., Honig, B., Shapiro, L.
PDB entry 5v5y: CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH MK1775
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-03-15
Authors: ZHU, J.-Y., SCHONBRUNN, E.
PDB entry 5v5z: Structure of CYP51 from the pathogen Candida albicans
Classification: OXIDOREDUCTASE/OXIDOREDUCATSE INHIBITOR
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-03-15
Authors: Keniya, M.V., Sabherwal, M., Wilson, R.K., Sagatova, A.A., Tyndall, J.D.A., Monk, B.C.
PDB entry 5v60: Phospho-ERK2 bound to AMP-PCP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2017-03-15
Authors: Lechtenberg, B.C., Riedl, S.J.
PDB entry 5v61: Phospho-ERK2 bound to bivalent inhibitor SBP2
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-03-15
Authors: Lechtenberg, B.C., Riedl, S.J.
PDB entry 5v62: Phospho-ERK2 bound to bivalent inhibitor SBP3
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-03-15
Authors: Lechtenberg, B.C., Riedl, S.J.
PDB entry 5v63: Crystal structure of macrocycles containing Abeta 16-22 (KLV(PHI)FAE) and Abeta 30-36 (AII(SAR)L(ORN)V)
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.091 Å
Deposited: 2017-03-15
Authors: Spencer, R.K., Salveson, P.J., Nowick, J.S.
PDB entry 5v64: Crystal structure of macrocycles containing Abeta 15-21 (QKLV(PHI)FA) and Abeta 30-36 (AII(SAR)L(ORN)V)
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.023 Å
Deposited: 2017-03-15
Authors: Salveson, P.J., Spencer, R.K., Nowick, J.S.
PDB entry 5v65: Crystal structure of macrocycles containing Abeta 17-23 (LV(PHI)FAED) and Abeta 30-36 (AII(SAR)L(ORN)V)
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2017-03-15
Authors: Kreutzer, A.G., Salveson, P.J., Nowick, J.S.
PDB entry 5v67: CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH Volasertib
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2017-03-16
Authors: EMBER, S.W., ZHU, J.-Y., SCHONBRUNN, E.
PDB entry 5v68: Crystal structure of cell division protein FtsZ from Mycobacterium tuberculosis bounded via the T9 loop
Classification: CELL CYCLE
Source organism: Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2017-03-16
Authors: Lazo, E.O., Ojima, I., Chowdhury, S.R., Awasthi, D., Jakoncic, J.
PDB entry 5v69: Crystal structure of the Middle East respiratory syndrome coronavirus papain-like protease bound to ubiquitin variant ME.4
Classification: HYDROLASE
Source organism: Homo sapiens; Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2017-03-16
Authors: Bailey-Elkin, B.A., Mark, B.L.
PDB entry 5v6a: Crystal structure of the Middle East respiratory syndrome coronavirus papain-like protease bound to ubiquitin variant ME.2
Classification: HYDROLASE
Source organism: Homo sapiens; Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-03-16
Authors: Bailey-Elkin, B.A., Mark, B.L.
PDB entry 5v6b: Crystal structure of GIPC1
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-03-16
Authors: Shang, G., Zhang, X.
PDB entry 5v6c: Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae
Classification: SUGAR BINDING PROTEIN
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-03-16
Authors: De, S., Kaus, K., Sinclair, S., Case, B.C., Olson, R.
PDB entry 5v6d: Crystal structure of nucleoside diphosphate kinase from Neisseria gonorrhoeae in complex with citrate
Classification: TRANSFERASE
Source organism: Neisseria gonorrhoeae NCCP11945
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-03-16
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 5v6e: Crystal structure of Myosin VI in complex with GH2 domain of GIPC1
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.506 Å
Deposited: 2017-03-16
Authors: Shang, G., Zhang, X.
PDB entry 5v6f: Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae bound to Mannotriose
Classification: SUGAR BINDING PROTEIN
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-03-16
Authors: De, S., Kaus, K., Sinclair, S., Case, B.C., Olson, R.
PDB entry 5v6g: Crystal structure of Influenza A virus Matrix Protein M1(NLS-88R)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (strain A/Wilson-Smith/1933 H1N1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-03-16
Authors: Musayev, F.N., Safo, M.K., Desai, U.R., Xie, H., Mosier, P.D., Chiang, M.-J.
PDB entry 5v6h: Crystal structure of Myosin VI in complex with GH2 domain of GIPC2
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.601 Å
Deposited: 2017-03-16
Authors: Shang, G., Zhang, X.
PDB entry 5v6i: Glycan binding protein Y3 from mushroom Coprinus comatus possesses anti-leukemic activity - Pt derivative
Classification: SUGAR BINDING PROTEIN
Source organism: Coprinus comatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-03-16
Authors: Li, K., Zhang, P., Gang, Y., Xia, C., Polston, J.E., Li, G., Li, S., Lin, Z., Yang, L.-J., Bruner, S.D., Ding, Y.
PDB entry 5v6j: Glycan binding protein Y3 from mushroom Coprinus comatus possesses anti-leukemic activity
Classification: SUGAR BINDING PROTEIN
Source organism: Coprinus comatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2017-03-16
Authors: Li, K., Zhang, P., Gang, Y., Xia, C., Polston, J.E., Li, G., Li, S., Lin, Z., Yang, L.-J., Bruner, S.D., Ding, Y.
PDB entry 5v6k: Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae Bound to N-acetylglucosaminyl-beta-1,2-mannose
Classification: SUGAR BINDING PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-03-16
Authors: De, S., Kaus, K., Sinclair, S., Case, B.C., Olson, R.
PDB entry 5v6l: Crystal Structure of Rabbit Anti-HIV-1 gp120 V3 Fab 10A37 in complex with V3 peptide JR-FL
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.549 Å
Deposited: 2017-03-17
Authors: Pan, R., Kong, X.-P.
PDB entry 5v6m: Crystal Structure of Rabbit Anti-HIV-1 gp120 V3 Fab 10A3 in complex with V3 peptide ConB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-03-17
Authors: Pan, R., Kong, X.-P.
PDB entry 5v6n: Crystal Structure of the highly open channel-stabilized mutant C27S + K33C + I9'A + N21'C of GLIC under reducing conditions.
Classification: membrane protein, metal transport
Source organism: Gloeobacter violaceus (strain PCC 7421)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.355 Å
Deposited: 2017-03-17
Authors: Gonzalez-Gutierrez, G., Grosman, C.
PDB entry 5v6o: Crystal Structure of the highly open channel-stabilized mutant G-2'I + I9'A of GLIC
Classification: membrane protein, metal transport
Source organism: Gloeobacter violaceus (strain PCC 7421)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.121 Å
Deposited: 2017-03-17
Authors: Gonzalez-Gutierrez, G., Grosman, C.
PDB entry 5v6p: CryoEM structure of the ERAD-associated E3 ubiquitin-protein ligase HRD1
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2017-03-17
Authors: Schoebel, S., Mi, W., Stein, A., Rapoport, T.A., Liao, M.
PDB entry 5v6q: Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase SMc04462 (SmGhrB) from Sinorhizobium meliloti in complex with NADP and malonate
Classification: OXIDOREDUCTASE
Source organism: Rhizobium meliloti (strain 1021)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2017-03-17
Authors: Shabalin, I.G., Handing, K.B., Miezaniec, A.P., Gasiorowska, O.A., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)
PDB entry 5v6r: Structure of Plexin D1 intracellular domain
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-03-17
Authors: Shang, G., Zhang, X.
PDB entry 5v6s: Crystal structure of small molecule acrylamide 1 covalently bound to K-Ras G12C
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-03-17
Authors: McGregor, L.M., Jenkins, M., Kerwin, C., Burke, J.E., Shokat, K.M.
PDB entry 5v6t: The Plexin D1 intracellular region in complex with GIPC1
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.189 Å
Deposited: 2017-03-17
Authors: Shang, G., Zhang, X.
PDB entry 5v6u: Crystal structure of human caspase-7 soaked with allosteric inhibitor 2-[(2-acetylphenyl)sulfanyl]benzoic acid
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-03-17
Authors: Vance, N.R., Gakhar, L., Spies, M.A.
PDB entry 5v6v: Crystal structure of small molecule aziridine 3 covalently bound to K-Ras G12C
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2017-03-17
Authors: McGregor, L.M., Jenkins, M., Kerwin, C., Burke, J.E., Shokat, K.M.
PDB entry 5v6x: Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase mutant (32A NTD) bound to tRNA(Pyl)
Classification: LIGASE/RNA
Source organism: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2017-03-17
Authors: Suzuki, T., Soll, D.
PDB entry 5v6y: Crystal structure of the human CLR:RAMP1 extracellular domain heterodimer with bound high-affinity and altered selectivity adrenomedullin variant
Classification: TRANSPORT PROTEIN / MEMBRANE PROTEIN
Source organism: Escherichia coli O157:H7; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-03-17
Authors: Pioszak, A., Booe, J.
PDB entry 5v6z: Crystal structure of human caspase-7 soaked with allosteric inhibitor 2-{[2-(4-chlorophenyl)-2-oxoethyl]sulfanyl}benzoic acid
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-03-17
Authors: Vance, N.R., Gakhar, L., Spies, M.A.
PDB entry 5v70: Crystal structure of N102A mutant of human macrophage migration inhibitory factor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2017-03-17
Authors: Pantouris, G., Lolis, E.
PDB entry 5v71: KRAS G12C in bound to quinazoline based switch II pocket (SWIIP) binder
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.228 Å
Deposited: 2017-03-17
Authors: Westover, K., Lu, J.
PDB entry 5v72: Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase SMc04462 (SmGhrB) from Sinorhizobium meliloti in complex with citrate
Classification: OXIDOREDUCTASE
Source organism: Rhizobium meliloti (strain 1021)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-03-17
Authors: Shabalin, I.G., Handing, K.B., Gasiorowska, O.A., Cooper, D.R., Matelska, D., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)
PDB entry 5v73: Crystal structure of N110A mutant of human macrophage migration inhibitory factor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2017-03-17
Authors: Pantouris, G., Lolis, E.
PDB entry 5v74: Structure of the intact Haliangium ochraceum microcompartment shell
Classification: STRUCTURAL PROTEIN
Source organism: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51015 Å
Deposited: 2017-03-17
Authors: Sutter, M., Kerfeld, C.A.
PDB entry 5v75: Structure of Haliangium ochraceum BMC-T HO-5816
Classification: STRUCTURAL PROTEIN
Source organism: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-03-17
Authors: Sutter, M., Aussignargues, C., Kerfeld, C.A.
PDB entry 5v76: Structure of Haliangium ochraceum BMC-T HO-3341
Classification: STRUCTURAL PROTEIN
Source organism: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2017-03-17
Authors: Sutter, M., Paasch, B., Zarzycki, J., Aussignargues, C., Kerfeld, C.A.
PDB entry 5v77: Crystal structure of an uncharacterized protein from Neisseria gonorrhoeae
Classification: UNKNOWN FUNCTION
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-03-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 5v79: E. coli dihydropteroate synthase complexed with an 8-mercaptoguanine derivative: 2-((2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)thio)-N-phenylacetamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2017-03-20
Authors: Dennis, M.L., Peat, T.S., Swarbrick, J.D.
PDB entry 5v7a: E. coli dihydropteroate synthase complexed with an 8-mercaptoguanine derivative: 2-((2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)thio)acetic acid
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2017-03-20
Authors: Dennis, M.L., Peat, T.S., Swarbrick, J.D.
PDB entry 5v7b: Crystal structure of Influenza A virus matrix protein M1 (NLS-88E)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (strain A/Wilson-Smith/1933 H1N1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-03-20
Authors: Musayev, F.N., Safo, M.K., Desai, U.R., Xie, H., Mosier, P.D., Chiang, M.-J.
PDB entry 5v7c: Crystal structure of LARP1-unique domain DM15 bound 5'TOP RNA sequence
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2017-03-20
Authors: Berman, A.J., Lahr, R.M., Al-Ashtal, H.A.
PDB entry 5v7d: T4 lysozyme Y18Ymbr
Classification: HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2017-03-20
Authors: Carlsson, A.-C.C.
PDB entry 5v7e: T4 lysozyme Y18Ymcl
Classification: HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2017-03-20
Authors: Carlsson, A.-C.C.
PDB entry 5v7f: T4 lysozyme Y18Ymi
Classification: HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2017-03-20
Authors: Carlsson, A.-C.C.
PDB entry 5v7g: Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase SMc04462 (SmGhrB) from Sinorhizobium meliloti in complex with NADPH and oxalate
Classification: OXIDOREDUCTASE
Source organism: Rhizobium meliloti (strain 1021)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-03-20
Authors: Shabalin, I.G., Mason, D.V., Handing, K.B., Kutner, J., Matelska, D., Cooper, D.R., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)
PDB entry 5v7i: Crystal structure of homo sapiens serine hydroxymethyltransferase 2 (mitochondrial) (SHMT2), in complex with glycine, PLP and folate-competitive pyrazolopyran inhibitor: 6-amino-4-isopropyl-3-methyl-4-(3-(pyrrolidin-1-yl)-5-(trifluoromethyl)phenyl)-1,4-dihydropyrano[2,3-c]pyrazole-5-carbonitrile
Classification: Transferase/Transferase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2017-03-20
Authors: Ducker, G.S., Ghergurovich, J.M., Mainolfi, N., Suri, V., Jeong, S., Friedman, A., Manfredi, M., Kim, H., Rabinowitz, J.D.
PDB entry 5v7j: Crystal Structure at 3.7 A Resolution of Glycosylated HIV-1 Clade A BG505 SOSIP.664 Prefusion Env Trimer with Four Glycans (N197, N276, N362, and N462) removed in Complex with Neutralizing Antibodies 3H+109L and 35O22.
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.907 Å
Deposited: 2017-03-20
Authors: Stewart-Jones, G.B.E., Zhou, T., Kwong, P.D.
PDB entry 5v7k: PCNA mutant D41A/D42A Protein Defective in Gene Silencing
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2017-03-20
Authors: Kondratick, C.M., Litman, J.M., Washington, M.T., Dieckman, L.M.
PDB entry 5v7l: PCNA mutant R61A/D63A Protein Defective in Gene Silencing
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.201 Å
Deposited: 2017-03-20
Authors: Kondratick, C.M., Litman, J.M., Washington, M.T., Dieckman, L.M.
PDB entry 5v7m: PCNA mutant L126A/I128A Protein Defective in Gene Silencing
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2017-03-20
Authors: Kondratick, C.M., Litman, J.M., Washington, M.T., Dieckman, L.M.
PDB entry 5v7n: Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase SMc04462 (SmGhrB) from Sinorhizobium meliloti in complex with NADP and 2-Keto-D-gluconic acid
Classification: OXIDOREDUCTASE
Source organism: Rhizobium meliloti (strain 1021)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-03-20
Authors: Shabalin, I.G., Handing, K.B., Miks, C.D., Kutner, J., Matelska, D., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)
PDB entry 5v7o: Crystal Structure of NosK from Streptomyces actuosus
Classification: TRANSFERASE
Source organism: Streptomyces actuosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-03-20
Authors: Booker, S.J., Boal, A.K., Grove, T.L., Badding, E.D.
PDB entry 5v7p: Atomic structure of the eukaryotic intramembrane Ras methyltransferase ICMT (isoprenylcysteine carboxyl methyltransferase), in complex with a monobody
Classification: TRANSFERASE
Source organism: synthetic construct; Tribolium castaneum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-03-20
Authors: Long, S.B., Diver, M.M., Pedi, L., Koide, A., Koide, S.