LiteFold/PDB huggingface dataset:
PDB entry 9oq0: Structure of the sweet receptor bound to sucralose in the compact state, transmembrane domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9oq1: Structure of the sweet receptor bound to sucralose in the loose state, extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9oq2: Structure of the sweet receptor bound to advantame in the compact state, extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9oq3: Structure of the sweet receptor bound to advantame in the loose state, extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9oq4: Structure of the human sweet receptor bound to advantame in the compact state, extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9oq5: Structure of the human sweet receptor bound to advantame in the intermediate state, extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9oq6: Structure of the human sweet receptor bound to advantame in the loose state, extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9oq8: Crystal structure of selenomethionine-substituted cyclodehydratase RohQ
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas brassicacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-05-20
Authors: Wei, Z.-W., Daniel-Ivad, P., Ryan, K.S.
PDB entry 9oq9: Crystal structure of E. coli ApaH in complex with Ap4AGG
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-05-20
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9oqa: Cryo-EM structure of AaaA, a Pseudomonas Aeruginosa autotransporter
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2025-05-20
Authors: Arachchige, E.J., Rahman, M.S., Singendonk, K., Kim, K.H.
PDB entry 9oqb: Crystal structure of E. coli ApaH in complex with Up4AGG
Classification: HYDROLASE
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-05-20
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9oqe: X-ray diffraction structure of apo-form CTX-M-14 beta-lactamase
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-20
Authors: Vlahakis, N.W., Rodriguez, J.A., Jacobs, L.M.C., Chen, Y.
PDB entry 9oqg: Human pannexin 1 channel with 0 mM ATP
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqh: Human pannexin 1 channel with 10 mM ATP
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqi: Human pannexin 1 channel with 20 mM ATP
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqj: Human pannexin 1 channel with 30 mM ATP
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqk: Human pannexin 1 channel from combined 0, 10, 20, 30 mM ATP datasets
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oql: Putative ATP-bound class from combined 10, 20, 30 mM ATP datasets
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqm: Apo class from combined 0, 10, 20, 30 mM ATP datastes
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqn: Constricted-pore class from combined 0, 10, 20, 30 mM ATP datasets
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqo: Dilated-pore class from combined 0, 10, 20, 30 mM ATP datasets
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqp: Human pannexin 1 channel with 1mM mefloquine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqq: Human pannexin 1 channel W74A mutant with 10mM ATP
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-05-21
Authors: Ruan, Z., Li, Y., Du, J., Lu, W.
PDB entry 9oqs: N-hydroxylamine dehydratase (NohD) crystal structure with heme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9oqt: N-hydroxylamine dehydratase (NohD) T98A/K167A mutant crystal structure with heme and N-hydroxylated ornithine (2.5h soak)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9oqu: N-hydroxylamine dehydratase (NohD) T98A/K167A mutant crystal structure with heme and N-hydroxylated ornithine (5h soak)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9oqv: N-hydroxylamine dehydratase (NohD) R144Y/V96A (A1/A2) mutant crystal structure with heme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9oqw: N-hydroxylamine dehydratase (NohD) H2F/F4P/P5S/R6Y/A59N/R144A (P1/P2/A1) mutant crystal structure with heme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9oqx: N-hydroxylamine dehydratase (NohD) H2F/F4P/P5S/R6Y/R144Y/V96A (P1/A1/A2) mutant crystal structure with heme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9oqy: X-ray crystal structure of Asp/Ala exchanger AspT at outward-facing conformation
Classification: MEMBRANE PROTEIN
Source organism: Tetragenococcus halophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2025-05-21
Authors: Nanatani, K., Hidaka, M., Ogasawara, S., Murata, T., Abe, K., Guan, L.
PDB entry 9oqz: N-hydroxylamine dehydratase (NohD) A59N/R144Y/V96A (P2/A1/A2) mutant crystal structure with heme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9or0: N-hydroxylamine dehydratase (NohD) H2F/F4P/P5S/R6Y/A59N/R144Y/V96A (P1/P2/A1/A2) mutant crystal structure with heme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9or1: N-hydroxylamine dehydratase (NohD) H2F/F4P/P5S/R6Y/A59N/R144Y/V96A/D172E/L172Q/D173P/R176V (P1/P2/A1/A2/A3) mutant crystal structure with heme and N-hydroxylated ornithine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinomadura luzonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-21
Authors: Higgins, M.A., Shi, X., Hoffarth, E.R., Du, Y.L., Ryan, K.S.
PDB entry 9or2: Antarctic Rhodopsin crystallized in bicelles at pH 4.0
Classification: MEMBRANE PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-05-21
Authors: Besaw, J.E., Peng, S., Ernst, O.P.
PDB entry 9or3: X-ray diffraction structure of CTX-M-14 beta-lactamase co-crystallized with avibactam
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-05-21
Authors: Vlahakis, N.W., Rodriguez, J.A., Jacobs, L.M.C., Chen, Y.
PDB entry 9or4: Crystal structure of SARS-CoV2 PLpro in complex with a covalent inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-05-21
Authors: Lye, M.F., Wang, J., Namchuk, M.N., Buhrlage, S.J.
PDB entry 9or5: Cryo-EM structure of rat TRPM1 in the apo state
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-05-21
Authors: Fabrizio, M., Zhao, C.
PDB entry 9or6: Crystal structure of PprA S-F-S tetramer from Deinococcus radiodurans
Classification: DNA BINDING PROTEIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-05-21
Authors: Szabla, R., Junop, M.S., Wood, K.
PDB entry 9or7: X-ray diffraction structure of CTX-M-14 beta-lactamase soaked with avibactam
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-21
Authors: Vlahakis, N.W., Rodriguez, J.A., Jacobs, L.M.C., Chen, Y.
PDB entry 9orb: X-ray diffraction structure of the CTX-M-14 beta-lactamase-avibactam complex an inhibitor cocktail-soaked crystal
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-21
Authors: Vlahakis, N.W., Rodriguez, J.A., Jacobs, L.M.C., Chen, Y.
PDB entry 9ore: CryoEM structure of 4F11 Fab bound to stabilized MPV-2c HMPV preF
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2025-05-21
Authors: McGovern, M.R., Pancera, M.
PDB entry 9org: MicroED structure of apo-form CTX-M-14 beta-lactamase
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2025-05-22
Authors: Vlahakis, N., Rodriguez, J.A., Jacobs, L.M.C., Chen, Y.
PDB entry 9orh: MicroED structure of the CTX-M-14 beta-lactamase-avibactam complex from inhibitor cocktail-soaked crystals
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2 Å
Deposited: 2025-05-22
Authors: Vlahakis, N., Rodriguez, J.A., Jacobs, L.M.C., Chen, Y.
PDB entry 9ork: Antarctic Rhodopsin crystallized in LCP at pH 8.5
Classification: MEMBRANE PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-05-22
Authors: Peng, S., Besaw, J.E., Ernst, O.P.
PDB entry 9orl: MicroED structure of CTX-M-14 beta-lactamase soaked with avibactam
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.3 Å
Deposited: 2025-05-22
Authors: Vlahakis, N.W., Rodriguez, J.A., Jacobs, L.M.C., Chen, Y.
PDB entry 9orm: The structure of human Vacuolar Protein Sorting 34 catalytic domain bound to RD-I-137
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-05-22
Authors: Burtch, M., Abiodun, W., Litchfield, C., Cartwright, J., Doukov, T., Moody, J.D.
PDB entry 9orn: Structure of the Acinetobacter calcoaceticus Cyclohexanone Monooxygenase mutant M10-R327K-R490E-I491E-Y246F-S186W-T187V
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-05-22
Authors: Raps, F.C., Jeffrey, P.D., Sorigue, D., Hyster, T.K.
PDB entry 9oro: Crystal structure of GH158(Pro) soaked with laminaritetraose at 1.31 angstrom resolution
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-05-22
Authors: Spadeto, J.P.M., Martins, M.P., Araujo, E.A., Mandelli, F., Domingues, M.N., Santos, C.A., Santos, C.R., Morais, M.A.B., Murakami, M.T.
PDB entry 9ors: MicroED structure of CTX-M-14 beta-lactamase co-crystallized with avibactam
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2 Å
Deposited: 2025-05-22
Authors: Vlahakis, N.W., Rodriguez, J.A., Jacobs, L.M.C., Chen, Y.
PDB entry 9orv: X-ray diffraction structure of lysozyme co-crystallized with N,N',N""-triacetylchitotriose
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-05-22
Authors: Flowers, C.W., Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9orw: X-ray diffraction structure of apo-form lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-23
Authors: Flowers, C.W., Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9orx: X-ray diffraction structure of lysozyme complexed with N,N',N""-triacetylchitotriose from a cocktail-soaked crystal
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-23
Authors: Flowers, C.W., Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9ory: X-ray diffraction structure of lysozyme soaked with N,N',N""-triacetylchitotriose
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-05-23
Authors: Flowers, C.W., Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9orz: MicroED structure of apo-form lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.3 Å
Deposited: 2025-05-23
Authors: Vlahakis, N.W., Flowers, C.W., Rodriguez, J.A.
PDB entry 9os0: MicroED structure of lysozyme complexed with N,N',N""-triacetylchitotriose from cocktail-soaked crystals
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.4 Å
Deposited: 2025-05-23
Authors: Vlahakis, N.W., Flowers, C.W., Rodriguez, J.A.
PDB entry 9os1: MicroED structure of lysozyme co-crystallized with N,N',N""-triacetylchitotriose
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.3 Å
Deposited: 2025-05-23
Authors: Vlahakis, N.W., Flowers, C.W., Rodriguez, J.A.
PDB entry 9os2: Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-05-23
Authors: Quan, C., Petzold, G., Gainza, P., Tsai, J., Bunker, R.D., Wiedmer, L., Donckele, E.J.
PDB entry 9os5: Human antibody Fab MPV498 bound to hMPV B2 post-fusion F
Classification: IMMUNE SYSTEM, ANTIVIRAL PROTEIN
Source organism: Homo sapiens; human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-05-23
Authors: Ghazi Esfahani, B., Mousa, J., Khalil, A.M.
PDB entry 9os6: Canertinib (CI-1033) in complex with wild-type EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-05-23
Authors: Lantry, A.M., Damnghani, T., Heppner, D.E.
PDB entry 9os7: Mycoplasma penetrans Methionyl tRNA Synthetase is an Asymmetric Dimer fused to N-terminal Ancillary Domains
Classification: LIGASE
Source organism: Malacoplasma penetrans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2025-05-23
Authors: Ghazi Esfahani, B., Bowman, M., Alexander, R., Stroupe, M.E.
PDB entry 9os8: MicroED structure of lysozyme soaked with N,N',N""-triacetylchitotriose
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.3 Å
Deposited: 2025-05-23
Authors: Vlahakis, N.W., Flowers, C.W., Rodriguez, J.A.
PDB entry 9osb: D3 prohead 1
Classification: VIRUS LIKE PARTICLE
Source organism: Pseudomonas phage D3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-05-23
Authors: Belford, A.K., Huet, A., Maurer, J.B., Duda, R.L., Conway, J.F.
PDB entry 9osc: Crystal structure of HP1gamma chromoshadow domain in complex with KAP1 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-05-23
Authors: Selvam, K., Liu, J., Singh, R.K., Gaurav, N., Kutateladze, T.G.
PDB entry 9osm: [4,8,7-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,8,7) base pairs and 2 nt sticky ends complexing calcium
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2025-05-24
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9oso: The specificity and structure of DNA crosslinking by a gut bacterial genotoxin
Classification: DNA
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2025-05-25
Authors: D'Souza, V.D., Balskus, E.P.
PDB entry 9osr: Structure of Fab HB420 in complex with influenza H3N2 A/Moscow/10/1999 neuraminidase
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.16 Å
Deposited: 2025-05-25
Authors: Lv, H., Wu, N.C.
PDB entry 9osw: Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-05-26
Authors: Zahn, K.E., Mader, P., Sicheri, F.
PDB entry 9osx: PfCyRPA-EM epitope mimic bound to monoclonal antibody Cy.004
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2025-05-26
Authors: Alam, N., Higgins, M.K.
PDB entry 9osy: Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-05-26
Authors: Zahn, K.E., Mader, P., Sicheri, F.
PDB entry 9ot0: Antarctic Rhodopsin crystallized in LCP at pH 4.6
Classification: MEMBRANE PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-05-26
Authors: Peng, S., Besaw, J.E., Ernst, O.P.
PDB entry 9ot1: Helical assembly of the IL-17RA/RB/ACT1 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-05-26
Authors: Zhang, H., Bai, X., Zhang, X.
PDB entry 9ot2: 13PF microtubule symmetry expansion
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2025-05-26
Authors: Bui, K.H., Legal, T.L.
PDB entry 9ot6: Cryo-EM structure of the PI4KA complex bound to an EFR3 interfering nanobody (F3IN)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2025-05-26
Authors: Shaw, A.L., Suresh, S., Yip, C.K., Burke, J.E.
PDB entry 9oth: D3 prohead 1
Classification: VIRUS LIKE PARTICLE
Source organism: Pseudomonas phage D3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-05-27
Authors: Belford, A.K., Huet, A., Maurer, J.B., Duda, R.L., Conway, J.F.
PDB entry 9oti: GATOR2 complex bound to arginine sensor CASTOR1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-05-27
Authors: Jansen, R.M., Hurley, J.H.
PDB entry 9otj: Crystal Structure of Salmonella FraB Deglycase, Crystal Form 1
Classification: ANTIBIOTIC
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.851 Å
Deposited: 2025-05-27
Authors: Bell, C.E., Zakharova, K.
PDB entry 9otl: Crystal Structure of Salmonella FraB Deglycase, Crystal Form 1
Classification: ANTIBIOTIC
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.846 Å
Deposited: 2025-05-27
Authors: Bell, C.E., Zakharova, K.
PDB entry 9otm: Human glutamine synthetase filament under turnover conditions
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2025-05-27
Authors: Greene, E.R., Muniz, R.S., Kollman, J.M., Fraser, J.S.
PDB entry 9otn: Human glutamine synthetase filament bound to ATP
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Deposited: 2025-05-27
Authors: Greene, E.R., Muniz, R.S., Kollman, J.M., Fraser, J.S.
PDB entry 9oto: Human glutamine synthetase decamer under turnover conditions
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.03 Å
Deposited: 2025-05-27
Authors: Greene, E.R., Muniz, R.S., Kollman, J.M., Fraser, J.S.
PDB entry 9otp: Human glutamine synthetase R298A decamer under turnover conditions
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.95 Å
Deposited: 2025-05-27
Authors: Greene, E.R., Muniz, R.S., Kollman, J.M., Fraser, J.S.
PDB entry 9otq: Human glutamine synthetase filament apo
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2025-05-27
Authors: Greene, E.R., Muniz, R.S., Kollman, J.M., Fraser, J.S.
PDB entry 9otr: Crystal Structure of Salmonella FraB Deglycase, Crystal Form 4 with deletion of C-terminal residues 313-325.
Classification: ANTIBIOTIC
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.839 Å
Deposited: 2025-05-27
Authors: Bell, C.E., Zakharova, K.
PDB entry 9ots: Cryo-EM structure of the T9SS PORkN ring complex of P. Gingivalis
Classification: MEMBRANE PROTEIN
Source organism: Porphyromonas gingivalis ATCC 33277
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-05-27
Authors: Liu, X., Song, L., Zheng, L., Hu, B.
PDB entry 9otu: Crystal Structure of Salmonella FraB Deglycase, E214A Mutant, Crystal Form 5
Classification: ANTIBIOTIC
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.873 Å
Deposited: 2025-05-27
Authors: Bell, C.E., Zakharova, K.
PDB entry 9otv: Truncated putative polyesterase from Chloracidobacterium thermophilum
Classification: HYDROLASE
Source organism: Chloracidobacterium thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-05-27
Authors: Caputo, A.T., Newton, S., Esquirol, L., Birgan, M., French, N.G., Scott, C., Ahmed, F.H.
PDB entry 9otw: Influenza A Virus Nucleoprotein(8-498)NP complex with 5-(4-{[(2R)-6,6-dimethyl-1,4-dioxan-2-yl]methoxy}phenyl)-2-oxo-6-(trifluoromethyl)-1,2-dihydropyridine-3-carboxamide (compound 13)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/(Puerto Rico/8/1934-Korea/426/1968)(H2N2))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.244 Å
Deposited: 2025-05-27
Authors: Mamo, M.
PDB entry 9oty: DDB1-CRBN with CK1 alpha, SB-405483, and DEG-47: composite map and model submission
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-05-27
Authors: Rizvi, Z., Lander, G.C.
PDB entry 9ou1: Crystal structure of maize AKR4C13 in P21 space group
Classification: OXIDOREDUCTASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-05-28
Authors: Santos, M.L., Giuseppe, P.O., Kiyota, E., Schmelz, E.A., Yunes, J.A., Koch, K.E., Murakami, M.T., Aparicio, R., Sousa, S.M.
PDB entry 9ou5: Crystal Structure of Salmonella FraB Deglycase, Crystal Form 3
Classification: ANTIBIOTIC
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.669 Å
Deposited: 2025-05-28
Authors: Bell, C.E., Zakharova, K.
PDB entry 9ou6: Crystal Structure of Salmonella FraB Deglycase, Crystal Form 1
Classification: ANTIBIOTIC
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.483 Å
Deposited: 2025-05-28
Authors: Bell, C.E., Zakharova, K.
PDB entry 9ou7: Methanosarcina acetivorans large (50S) subunit dimer
Classification: RIBOSOME
Source organism: Methanosarcina acetivorans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-05-28
Authors: Ghosh, A., Fordjour, G.N.R., Armache, J.-P., Ferry, J.G., Murakami, K.S., Bevilacqua, P.C.
PDB entry 9ou9: AZD3759 in complex with wild-type EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-05-28
Authors: Lantry, A.M., Damnghani, T., Heppner, D.E.
PDB entry 9oub: Structure of full-length Streptococcus mutans GtfD in complex with dextran 1000 in domain V
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-05-28
Authors: Schormann, N., Deivanayagam, C.
PDB entry 9ouc: Influenza A Virus Nucleoprotein(8-498)NP complex with 5-(4-(morpholinomethyl)phenyl)-2-oxo-6-(trifluoromethyl)-1,2-dihydropyridine-3-carboxamide (Compound 3)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/(Puerto Rico/8/1934-Korea/426/1968)(H2N2))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.732 Å
Deposited: 2025-05-28
Authors: Mamo, M.
PDB entry 9oue: Structure of full-length Streptococcus mutans GtfD in complex with dextran 5000 in domain V
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-05-28
Authors: Schormann, N., Deivanayagam, C.
PDB entry 9ouf: Crystal structure of an ADP-ribosyl hydrolase from Streptococcus parasanguinis
Classification: HYDROLASE
Source organism: Streptococcus parasanguinis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-05-28
Authors: Colautti, J., Kim, Y., Whitney, J.C.
PDB entry 9oug: Influenza A Virus Nucleoprotein(8-498)NP complex with rac-5-(4-(((2R,6R)-6-(methoxymethyl)-6-methyl-1,4-dioxan-2-yl)methoxy)phenyl)-2-oxo-6-(trifluoromethyl)-1,2-dihydropyridine-3-carboxamide (Compound 20)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/(Puerto Rico/8/1934-Korea/426/1968)(H2N2))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-05-28
Authors: Mamo, M.
PDB entry 9ouk: DDB1-CRBN with Ikaros(ZF2) and DEG-47: composite map and model submission
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-05-28
Authors: Rizvi, Z., Lander, G.C.
PDB entry 9oul: DDB1-CRBN with Ikaros(ZF2), SB-405483, and DEG-47: composite map and model submission
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-05-28
Authors: Rizvi, Z., Lander, G.C.
PDB entry 9oum: Native GABA-A receptor from rat cerebella, beta2-alpha1-beta1-alpha6-gamma2 subtype, in complex with GABA and PZ-II-029
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-05-29
Authors: Sun, C., Gouaux, E.
PDB entry 9oun: Native GABA-A receptor from rat cerebella, beta2-alpha1-beta2-alpha1-gamma2 subtype, in complex with GABA and PZ-II-029
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-05-29
Authors: Sun, C., Gouaux, E.
PDB entry 9ouo: Native GABA-A receptor from rat cerebella, beta1-alpha1-beta1-alpha1-gamma2 subtype, in complex with GABA and PZ-II-029
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-05-29
Authors: Sun, C., Gouaux, E.
PDB entry 9oup: Native GABA-A receptor from rat cerebella, beta2-alpha1-beta1-alpha6-gamma2 subtype, in complex with GABA
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-05-29
Authors: Sun, C., Gouaux, E.
PDB entry 9ouq: Native GABA-A receptor from rat cerebella, beta1-alpha1-beta2-alpha1-gamma2 subtype, in complex with GABA
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-05-29
Authors: Sun, C., Gouaux, E.
PDB entry 9our: Native GABA-A receptor from rat cerebella, beta2-alpha1-beta2-alpha1-gamma2 subtype, in complex with GABA
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-05-29
Authors: Sun, C., Gouaux, E.
PDB entry 9ous: D3 Virion icos
Classification: VIRUS
Source organism: Pseudomonas phage D3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-05-29
Authors: Belford, A.K., Huet, A., Maurer, J.B., Duda, R.L., Conway, J.F.
PDB entry 9out: SPOP double donut locally refined MATH domains
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-05-29
Authors: Cuneo, M.J.
PDB entry 9ouu: SPOP double donut locally refined MATH domains
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-05-29
Authors: Cuneo, M.J.
PDB entry 9ouv: Crystal structure of human IGG1 FC fragment-FC-gamma receptor IIB complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2025-05-29
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 9ouw: SPOP double donut locally refined MATH domains
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-05-29
Authors: Cuneo, M.J.
PDB entry 9ouz: Icosahedral D3 expanded capsid
Classification: VIRUS
Source organism: Pseudomonas phage D3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-05-29
Authors: Belford, A.K., Huet, A., Maurer, J.B., Duda, R.L., Conway, J.F.
PDB entry 9ov4: Native GABA-A receptor from rat cerebella, beta1-alpha1-beta2-alpha1-gamma2 subtype, in complex with GABA and PZ-II-029
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-05-29
Authors: Sun, C., Gouaux, E.
PDB entry 9ovf: Rubredoxin covalently linked to benzo-18-crown-6
Classification: METAL BINDING PROTEIN
Source organism: Desulfovibrio desulfuricans ATCC 27774
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-05-29
Authors: Adhami, N., Sawaya, M.R., Shafaat, H.S., Rodriguez, J.A., Spokoyny, A.M.
PDB entry 9ovh: Structure of an ancestral ethylene forming enzyme, Anc357, in complex with Mn
Classification: OXIDOREDUCTASE
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-05-30
Authors: Chatterjee, S., Rankin, J.A., Farrugia, M.A., Hu, J., Hausinger, R.P.
PDB entry 9ovi: Crystal Structure of SH3-like_bac-type domain (79-145) of Conserved domain protein GBAA_2967 from Bacillus anthracis Ames ancestor
Classification: UNKNOWN FUNCTION
Source organism: Bacillus anthracis str. Ames
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-30
Authors: Minasov, G., Dubrovska, I., Winsor, J., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9ovj: Structure of human SHOC2 in complex with a small molecule inhibitor (R)-5
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-05-30
Authors: Dhembi, A., Hauseman, Z.J., King, D.
PDB entry 9ovq: PAD2 with an inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.175 Å
Deposited: 2025-05-30
Authors: Yamaguchi, M.
PDB entry 9ovr: CryoEM structural insight into the breast cancer pH regulator NBCn1
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-30
Authors: Weiguang, W., Hristina, R.Z., Kirill, T., Hong, Z., Alexander, P., Ira, K.
PDB entry 9ovt: Heteromeric GluA1/A2 in the inactive state, composite map of LBD-TMD
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2025-05-31
Authors: Yen, L.Y., Sobolevsky, A.I., Newton, T.P., Gangwar, S.P.
PDB entry 9ovu: Composite map of GluA1/A2 in the activated state, in complex with positive allosteric modulator (R,R)-2b and agonist glutamate (ATD-LBD-TMD)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-05-31
Authors: Yen, L.Y., Sobolevsky, A.I., Newton, T.P., Gangwar, S.P.
PDB entry 9ovv: Heteromeric GluA1/A2-CNIH1 in the activated state, composite map of LBD-TMD
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2025-05-31
Authors: Yen, L.Y., Newton, T.P., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9ovw: Heteromeric GluA1/A2 in the desensitized state, composite map of ATD-LBD-TMD
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.91 Å
Deposited: 2025-05-31
Authors: Yen, L.Y., Newton, T.P., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9ovx: CRYSTAL STRUCTURE OF UBIQUITIN K27M MUTANT
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-06-01
Authors: Lubkowski, J., Wentz, B.G., Fushman, D., Gardiner, C.
PDB entry 9ovz: Gallid alphaherpesvirus-2 large tegument protein NLS in complex with Importin alpha
Classification: NUCLEAR PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-06-02
Authors: Donnelly, C.M., Nath, B.K., Forwood, J.K.
PDB entry 9ow2: Crystal Structure of the Surface Protein (CD630_07380) from Clostridium difficile Strain 630
Classification: MEMBRANE PROTEIN
Source organism: Clostridioides difficile 630
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-06-02
Authors: Minasov, G., Shuvalova, L., Kiryukhina, O., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9ow9: Human WRN helicase in complex with allosteric ligand Compound 1
Classification: HYDROLASE
Source organism: Spodoptera frugiperda
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2025-06-02
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.J.
PDB entry 9owa: Human WRN helicase in complex with allosteric ligand Compound 2
Classification: HYDROLASE
Source organism: Spodoptera frugiperda
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-06-02
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.J.
PDB entry 9owb: Human WRN helicase in complex with allosteric ligand Compound 6
Classification: HYDROLASE
Source organism: Spodoptera frugiperda
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-06-02
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.J.
PDB entry 9owc: Human WRN helicase in complex with allosteric ligand Compound 7
Classification: HYDROLASE
Source organism: Spodoptera frugiperda
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-06-02
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.J.
PDB entry 9owd: Human WRN helicase in complex with allosteric ligand Compound 9
Classification: HYDROLASE
Source organism: Spodoptera frugiperda
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-06-02
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.J.
PDB entry 9owe: CryoEM structure of stabilized dengue 3 virus envelope glycoprotein in complex with Fab of F25.S02
Classification: IMMUNE SYSTEM
Source organism: dengue virus type 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2025-06-02
Authors: Hurlburt, N.K., Pancera, M.
PDB entry 9owf: X-ray crystal structure of Zika virus envelope glycoprotein in complex with Fab of F25.S02
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-02
Authors: Hurlburt, N.K., Pancera, M.
PDB entry 9owg: Crystal Structure of the Immunity Protein (52 domain-containing protein) from Pseudomonas aeruginosa PAO1.
Classification: ANTITOXIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-06-02
Authors: Minasov, G., Wawrzak, Z., Skarina, T., Stogios, P.J., Savchenko, A., Satchell, K.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9ox7: In situ microtubule structure in the axon of a human neuron
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-06-03
Authors: Zehr, E.A., Sun, S., Roll-Mecak, A.
PDB entry 9ox9: Cryo-EM structure of S. Mansoni p97 bound to CB-5083
Classification: CHAPERONE
Source organism: Schistosoma mansoni
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-06-03
Authors: Stephens, D.R., Han, Y., Chen, Z., Collins, J.J., Fung, H.Y.J.
PDB entry 9oxa: CryoEM structure of Gi-coupled TAS2R43 with aristolochic acid I
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-03
Authors: Kim, Y., Gumpper, R.H., Roth, B.L.
PDB entry 9oxb: CryoEM structure of Ggust-coupled TAS2R43 with aristolochic acid I
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-03
Authors: Kim, Y., Gumpper, R.H., Roth, B.L.
PDB entry 9oxe: CRYO-EM STRUCTURE OF the human mPSF IN COMPLEX WITH THE AGUAAA poly(A) signal
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-06-03
Authors: Huang, L., Tong, L., Chu, H.-F.
PDB entry 9oxj: CryoEM structure of FlaA filament from Shewanella oneidensis
Classification: STRUCTURAL PROTEIN
Source organism: Shewanella oneidensis MR-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-03
Authors: Qing, L., Fan, H.C., Liu, Y., Miller, J.F., Huang, Y., Zhou, Z.H.
PDB entry 9oxk: CryoEM structure of FlaB filament from Shewanella oneidensis
Classification: STRUCTURAL PROTEIN
Source organism: Shewanella oneidensis MR-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-03
Authors: Qing, L., Fan, H.C., Liu, Y., Miller, J.F., Huang, Y., Zhou, Z.H.
PDB entry 9oxl: SthK closed state at low temperature, cAMP-bound in the presence of DOPE
Classification: TRANSPORT PROTEIN
Source organism: Spirochaeta thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-06-03
Authors: Li, C.-C., Nimigean, C.M.
PDB entry 9oxm: SthK intermediate state at low temperature, cAMP-bound in the presence of DOPE
Classification: TRANSPORT PROTEIN
Source organism: Spirochaeta thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-06-03
Authors: Li, C.-C., Nimigean, C.M.
PDB entry 9oxn: Compact, ligand-free state of Manduca sexta soluble guanylate cyclase mutant beta C122S
Classification: SIGNALING PROTEIN
Source organism: Manduca sexta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-06-03
Authors: Thomas, W.C., Houghton, K.A.
PDB entry 9oxp: Beta-barrel forming peptide macrocycle
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-06-04
Authors: Dang, V.T., Nguyen, A.
PDB entry 9oxq: X-ray crystal structure of Beta-Barrel forming peptide macrocycle
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-06-04
Authors: Dang, V.T., Nguyen, A.
PDB entry 9oxs: CRYO-EM STRUCTURE OF the human mPSF IN COMPLEX WITH THE AAUAAU poly(A) signal
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-06-04
Authors: Huang, L., Tong, L., Chu, H.-F.
PDB entry 9oy8: Flavobacterium johnsoniae 30S ribosomal subunit.
Classification: RIBOSOME
Source organism: Flavobacterium johnsoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-04
Authors: Ortega, J., Arpin, D.
PDB entry 9oyb: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 1 with flexibly bound DNA at the shoulder
Classification: REPLICATION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyc: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 2 with flexibly bound DNA at the shoulder
Classification: REPLICATION/DNA
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyd: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 3 with disordered DNA at the shoulder
Classification: REPLICATION/DNA
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oye: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 1 with sharply bent DNA
Classification: REPLICATION/DNA
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyf: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 2 with less bent DNA
Classification: REPLICATION/DNA
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyg: Structure of the E. coli clamp loader DnaX-complex alone
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyh: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 1 the DNA recognition state
Classification: REPLICATION/DNA
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyi: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 1 with fully open clamp and unsettled DNA
Classification: REPLICATION/DNA
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyj: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 2 with fully open clamp and settled DNA
Classification: REPLICATION
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyk: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 3 with partially closed clamp
Classification: REPLICATION/DNA
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oyl: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 4 with fully closed clamp
Classification: REPLICATION
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.
PDB entry 9oym: Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 5 with fully closed clamp
Classification: REPLICATION/DNA
Source organism: DNA molecule; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-06-04
Authors: Zheng, F., Yao, Y.N., Georgescu, R., Lyu, M., O'Donnell, M.E., Li, H.