LiteFold/PDB huggingface dataset:
PDB entry 8yq0: Crystal structure of human phosphoribosyl pyrophosphate synthetase 1(PRPS1) chimera swapped with three residues from PRPS2
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-03-18
Authors: Zhang, L., Zhang, L.
PDB entry 8yq1: Linear form of FGF10 from Homo sapiens
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2024-03-18
Authors: Park, H.J., Park, Y.S., Lee, C.E., Kang, L.W.
PDB entry 8yq3: Structure of cyclohexanone monooxygenase mutant from Acinetobacter calcoaceticus
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-03-19
Authors: Qiang, G., Zheng, Y.C., Feng, L., Yu, H.L.
PDB entry 8yq4: Structure of mBaoJin2
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-19
Authors: Boyko, K.M., Nikolaeva, A.Y., Minyaev, M.E., Kuzmicheva, T.P., Vlaskina, A.V., Popov, V.O., Pyatkevich, K.D., Subach, F.V.
PDB entry 8yq5: Cryo-EM structure of a de novo designed transmembrane protein tmZC8-BTB
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-19
Authors: Lu, P.L., Zhou, C.
PDB entry 8yq6: Cryo-EM structure of a de novo designed voltage-gated anion channel (dVGAC)
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-03-19
Authors: Lu, P.L., Zhou, C.
PDB entry 8yq7: Acinetobacter baumannii membrane-bound lytic murein transglycosylase G
Classification: LYASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2024-03-19
Authors: Jang, H.S., Park, H.H.
PDB entry 8yq8: Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS V1/S) complexed with FB8, NADPH and dUMP
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum VS/1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-19
Authors: Vanichtanankul, J., Vitsupakorn, D., Saeyang, T., Arwon, U., Hoarau, M., Decharuangsilp, S., Kamchonwongpaisan, S., Yuthavong, Y.
PDB entry 8yq9: Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS V1/S) complexed with FB6, NADPH and dUMP
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-03-19
Authors: Vanichtanankul, J., Vitsupakorn, D., Saeyang, T., Arwon, U., Hoarau, M., Decharuangsilp, S., Kamchonwongpaisan, S., Yuthavong, Y.
PDB entry 8yqa: Galectin-10 L27A
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-03-19
Authors: Su, J.Y., Sun, Y.Q.
PDB entry 8yqb: Galectin-10 N32A
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-03-19
Authors: Su, J.Y., Sun, Y.Q.
PDB entry 8yqc: Galectin-10 C29AC57A
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-03-19
Authors: Su, J.Y., Sun, Y.Q.
PDB entry 8yqd: Crystal structure of human transthyretin variant A97S in complex with Tafamidis
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-03-19
Authors: Tzeng, S.R., Huang, C.H., Wang, Y.S., Hsieh, M.F.
PDB entry 8yqe: CDK2 and small molecular inhibitor L56
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-03-19
Authors: Ge, S.
PDB entry 8yqf: Structure of PsSIR2 tetradecamer
Classification: IMMUNE SYSTEM
Source organism: Paenibacillus sp. 453mf
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2024-03-19
Authors: Yu, G., Liao, F., Li, X., Li, Z., Zhang, H.
PDB entry 8yqg: Dimeric structure of the Longin domain from a Lokiarchaeota archaeon Roadblock-Longin protein
Classification: UNKNOWN FUNCTION
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-03-19
Authors: Kitaoku, Y., Sitthisak, P., Robinson, R.C.
PDB entry 8yqh: Crystal structure of Cry3Aa-PEI at 3.1 A
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2024-03-19
Authors: Li, J., Chan, M.K.
PDB entry 8yqj: Crystal structure of HylD1
Classification: HYDROLASE
Source organism: Paracoccus kondratievae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-03-19
Authors: Wang, N., Li, C.Y.
PDB entry 8yqk: Roadblock domain from a Lokiarchaeota archaeon Roadblock-Longin protein in P21
Classification: UNKNOWN FUNCTION
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2024-03-19
Authors: Kitaoku, Y., Sitthisak, P., Robinson, R.C.
PDB entry 8yql: Roadblock domain from a Lokiarchaeota archaeon Roadblock-Longin protein in P31
Classification: UNKNOWN FUNCTION
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-03-19
Authors: Kitaoku, Y., Sitthisak, P., Robinson, R.C.
PDB entry 8yqm: Structure of cyclohexanone monooxygenase mutant from Acinetobacter calcoaceticus
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2024-03-19
Authors: Qiang, G., Zheng, Y.C., Feng, L., Yu, H.L.
PDB entry 8yqn: Torpedo acetylcholine receptor in complex with Erabutoxin A
Classification: MEMBRANE PROTEIN
Source organism: Laticauda semifasciata; Tetronarce californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2024-03-19
Authors: Chan, C.Y.L., Li, H.H., Hibbs, R.E., Kini, R.M.
PDB entry 8yqo: Cryo-EM structure of human lanosterol 14alpha-demethylase (CYP51) in complex with FLZ
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-03-19
Authors: Zhou, L.C.
PDB entry 8yqp: Crystal structure of HylD1 in complex with MEP
Classification: HYDROLASE
Source organism: Paracoccus kondratievae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-03-19
Authors: Wang, N., Li, C.Y.
PDB entry 8yqq: Structure of HKU1B RBD with TMPRSS2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Candidatus Accumulibacter adiacens; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2024-03-19
Authors: Gao, X., Cui, S., Ding, W., Zhu, K., Shang, K., Zhu, H.
PDB entry 8yqt: African swine fever virus RNA Polymerase-M1249L complex2
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2024-03-20
Authors: Feng, X.Y.
PDB entry 8yqu: African swine fever virus RNA Polymerase-M1249L complex1
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2024-03-20
Authors: Feng, X.Y.
PDB entry 8yqv: African swine fever virus RNA Polymerase core
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-03-20
Authors: Feng, X.Y.
PDB entry 8yqw: ASFV RNA polymerase-M1249L complex3
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-03-20
Authors: Feng, X.Y.
PDB entry 8yqx: ASFV RNA polymerase-M1249L complex4
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-03-20
Authors: Feng, X.Y.
PDB entry 8yqy: ASFV RNA polymerase-M1249L complex complete
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-03-20
Authors: Feng, X.Y.
PDB entry 8yqz: African swine fever virus RNA Polymerase--DNA complex
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-03-20
Authors: Feng, X.Y.
PDB entry 8yr0: Cryo-EM Structure of AdeG from Acinetobacter baumannii
Classification: MEMBRANE PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-03-20
Authors: Ouyang, Z., Wen, Y., Zhu, L.
PDB entry 8yr2: Structure of NET-Nisoxetine in outward-open state
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-03-20
Authors: Zhang, H., Xu, E.H., Jiang, Y.
PDB entry 8yr3: Cryo-EM structure of the human ABCB6 in complex with Cd(II):GSH
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-20
Authors: Choi, S.H., Lee, S.S., Lee, H.Y., Kim, S., Kim, J.W., Jin, M.S.
PDB entry 8yr4: Cryo-EM structure of the human ABCB6 in complex with Cd(II):Phytochelatin 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-20
Authors: Choi, S.H., Lee, S.S., Lee, H.Y., Kim, S., Kim, J.W., Jin, M.S.
PDB entry 8yr5: Crystal structure of E. coli phosphatidylserine synthase in apo state
Classification: TRANSFERASE
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2024-03-20
Authors: Kim, J., Lee, E., Cho, G.
PDB entry 8yr6: Crystal structure of E. coli phosphatidylserine synthase complexed with 16:0/16:0 CDP-DG
Classification: TRANSFERASE
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2024-03-20
Authors: Kim, J., Lee, E., Cho, G.
PDB entry 8yr7: Crystal structure of human dishevelled 2 (Dvl2) PDZ domain fused with WGEF internal peptide motif
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-03-20
Authors: Omble, A., Mahajan, S., Kulkarni, K.A.
PDB entry 8yr9: the Cyro-EM Structure of human SLC26A3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-03-20
Authors: Feng, J.R., Dang, S.
PDB entry 8yra: The Cyro-EM Structure of human SLC26A3 with specific inhibitor DRAinh-A250
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-03-20
Authors: Feng, J.R., Dang, S.
PDB entry 8yrb: Structure of cyclohexanone monooxygenase mutant from Acinetobacter calcoaceticus
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-03-21
Authors: Qiang, G., Zheng, Y.C., Feng, L., Yu, H.L.
PDB entry 8yrc: Chlorinated YabJ from Staphylococcus aureus
Classification: STRUCTURAL PROTEIN
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-03-21
Authors: Jeong, C., Kim, H.J.
PDB entry 8yrd: Cryo-EM structure of hydroxylase in soluble methane monooxygenase from Methylosinus sporium 5
Classification: OXIDOREDUCTASE
Source organism: Methylosinus sporium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2024-03-21
Authors: Hwang, Y., Ryu, B., Pozharski, E., Lee, S.J.
PDB entry 8yre: Crystal structure of Arabidopsis VTC1-KJC2
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.54 Å
Deposited: 2024-03-21
Authors: Zhang, C., Liu, L.
PDB entry 8yrf: Crystal structure of LmrR with V15 replaced by unnatural amino acid 4-amino-L-phenyl-cysteine
Classification: DNA BINDING PROTEIN
Source organism: Lactococcus cremoris subsp. cremoris MG1363
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2024-03-21
Authors: Zhou, Z., Huang, W.
PDB entry 8yrg: CryoEM structure of fospropofol-bound MRGPRX4-Gq complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-03-21
Authors: Cao, C., Fay, J.F., Roth, B.L.
PDB entry 8yrh: Complex of SARS-CoV-2 main protease and Rosmarinic acid
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.841 Å
Deposited: 2024-03-21
Authors: Wang, Q.S., Li, Q.H.
PDB entry 8yri: Crystal structure of sugar phosphotransferase system EIIB component CPF_0401 from Clostridium perfringens
Classification: TRANSFERASE
Source organism: Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-21
Authors: Hirayama, Y., Oiki, S., Mikami, B., Ogura, K., Hashimoto, W.
PDB entry 8yrj: Mouse Fc epsilon RI
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2024-03-21
Authors: Zhang, Z., Yui, M., Ohto, U., Shimizu, T.
PDB entry 8yrk: Tubulin-Compound KY216: stathmin-like domain complex
Classification: CELL CYCLE
Source organism: Gallus gallus; Mus musculus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2024-03-21
Authors: Xia, Y.Z., He, X.Y.
PDB entry 8yrl: Crystal structure of Aspergillus fumigatus Galactofuranosylransferase (AfGfsA) in complex with UDP and galactofuranose
Classification: TRANSFERASE
Source organism: Aspergillus fumigatus CEA10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2024-03-21
Authors: Okuno, A., Oka, T., Chihara, Y., Hirata, R., Kadooka, C., Teramoto, T., Hira, D., Kakuta, Y.
PDB entry 8yrm: Iota toxin Ib pore serine-clamp mutant
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2024-03-21
Authors: Ninomiya, Y., Yoshida, T., Yamada, T., Kishikawa, J., Tsuge, H.
PDB entry 8yro: SARS-CoV-2 Delta Spike in complex with JL-8C
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-03-21
Authors: Nguyen, V.H.T., Chen, X.
PDB entry 8yrp: SARS-CoV-2 Delta Spike in complex with JM-1A
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2024-03-21
Authors: Nguyen, V.H.T., Chen, X.
PDB entry 8yrs: Crystal structure of human RECQ1 helicase containing a flexible linker in complex with tailed duplex DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-03-21
Authors: Das, T., Das, A.K., Ganguly, A.
PDB entry 8yrt: Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis in the holo form obtained at pH 7.0
Classification: TRANSFERASE
Source organism: Haliscomenobacter hydrossis DSM 1100
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-21
Authors: Matyuta, I.O., Bakunova, A.K., Minyaev, M.E., Popov, V.O., Boyko, K.M.
PDB entry 8yru: Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis (apo form) after 15 sec of soaking with phenylhydrazine
Classification: TRANSFERASE
Source organism: Haliscomenobacter hydrossis DSM 1100
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-21
Authors: Matyuta, I.O., Bakunova, A.K., Minyaev, M.E., Popov, V.O., Boyko, K.M.
PDB entry 8yrv: Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis complexed with 3-aminooxypropionic acid
Classification: TRANSFERASE
Source organism: Haliscomenobacter hydrossis DSM 1100
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-03-21
Authors: Matyuta, I.O., Bakunova, A.K., Nikolaeva, A.Y., Popov, V.O., Boyko, K.M.
PDB entry 8yry: HER3 in complex with FAb Hu3f8
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-03-22
Authors: Wang, M., Li, X.
PDB entry 8ys1: Crystal structure of rat thioredoxin, Wild-type
Classification: ELECTRON TRANSPORT
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.112 Å
Deposited: 2024-03-22
Authors: Baba, T., Ueno, G., Ohe, C., Saji, S., Yamamoto, S., Yamamoto, M., Ouchida, M., Kawasaki-Ohmori, I., Takeshita, K.
PDB entry 8ys2: Overall structure of Eastern Equine Encephalitis virus VLP in complex with the receptor VLDLR LA1-2
Classification: VIRUS LIKE PARTICLE
Source organism: Eastern equine encephalitis virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2024-03-22
Authors: Cao, D., Ma, B., Cao, Z., Xu, X., Zhang, X., Xiang, Y.
PDB entry 8ys3: Crystal structure of rat thioredoxin, F54L mutant
Classification: ELECTRON TRANSPORT
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.752 Å
Deposited: 2024-03-22
Authors: Takeshita, K., Baba, T., Ohe, C., Saji, S., Yamamoto, S., Yamamoto, M., Ouchida, M., Kawasaki-Ohmori, I.
PDB entry 8ys4: Overall structure of Eastern Equine Encephalitis virus VLP in complex with the receptor VLDLR LA3-5
Classification: VIRUS LIKE PARTICLE
Source organism: Eastern equine encephalitis virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2024-03-22
Authors: Cao, D., Ma, B., Cao, Z., Xu, X., Zhang, X., Xiang, Y.
PDB entry 8ys5: Cryo-EM structure of the Helicobacter pylori OorDABC complex in the apo-form
Classification: OXIDOREDUCTASE
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-03-22
Authors: Lan, W., Gao, Y., Bi, H.
PDB entry 8ys6: Helicobacter pylori OorDABC in complex with Napabucasin
Classification: OXIDOREDUCTASE
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-03-22
Authors: Lan, W., Gao, Y., Bi, H.
PDB entry 8ys7: Crystal structure of actinomycin D and Echinomycin-d(ACGGGCT/AGCCCCGT) complex
Classification: DNA/ANTIBIOTIC
Source organism: Streptomyces; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2024-03-22
Authors: Lee, Y.Y., Hou, M.H.
PDB entry 8ys8: The Cyro-EM Structure of human SLC26A3 with non-specific inhibitor Tenidap
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2024-03-22
Authors: Feng, J.R., Dang, S.
PDB entry 8ys9: Crystal structure of Phosphatidylethanolamine N-methyltransferase from R. thermophilum complexed with DMPE and SAH
Classification: TRANSFERASE
Source organism: Rubellimicrobium thermophilum DSM 16684
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2024-03-22
Authors: Kim, J., Salsabila, S.D.
PDB entry 8ysa: The co-crystal structure of SARS-CoV-2 Mpro in complex with compound H102
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-03-22
Authors: Zheng, W.Y., Fu, L.F., Feng, Y., Han, P., Qi, J.X.
PDB entry 8ysb: Crystal structure of DynA1, a putative monoxygenase from Mivromonospora chersina.
Classification: ISOMERASE
Source organism: Micromonospora chersina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-03-22
Authors: Yan, X.F., Huang, H.W., Gao, Y.G., Liang, Z.X.
PDB entry 8ysc: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with ATP (form 1)
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-03-22
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysd: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with ATP (form 2)
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2024-03-22
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8yse: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with dATP
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2024-03-22
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysf: MERS-CoV RBD in complex with nanobody Nb9
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2024-03-22
Authors: Wang, Y.X., Ma, S.
PDB entry 8ysg: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with GTP
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.171 Å
Deposited: 2024-03-22
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysh: MERS-CoV RBD in complex with nanobody Nb14
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-03-23
Authors: Wang, Y.X., Ma, S.
PDB entry 8ysi: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with UTP
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.897 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysj: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with UMPNPP
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.903 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysk: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with UTP Mn
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.984 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysl: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with UTP and ATP
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysm: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with CTP Mn
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysn: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB Ear-cut mutant
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8yso: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB Ear-cut mutant in complex with ATP
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysp: Crystal structure of a cyanobacteria type III polyketide synthase CylI
Classification: TRANSFERASE
Source organism: Cylindrospermum licheniforme UTEX B 2014
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-23
Authors: Wang, H.Q., Xiang, Z.
PDB entry 8ysq: Crystal structure of SAVED domain of Cap5 from Deinococcus wulumuqiensis
Classification: IMMUNE SYSTEM
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysr: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with hexatungstotellurate(VI) TEW
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8yss: Crystal structure of the apo form of Deinococcus wulumuqiensis CD-NTase DwCdnB
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8yst: Structure of CylI in complex with beta-ketoacyl-SNAC substrate
Classification: TRANSFERASE
Source organism: Cylindrospermum licheniforme UTEX B 2014
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-23
Authors: Wang, H.Q., Xiang, Z.
PDB entry 8ysu: Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with CTP
Classification: TRANSFERASE
Source organism: Deinococcus wulumuqiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.944 Å
Deposited: 2024-03-23
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8ysv: Crystal structure of beta - glucosidase 6PG from Enterococcus faecalis
Classification: HYDROLASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2024-03-23
Authors: Wang, W.Y., Li, Y.J., Liu, Z.Y., Han, X.D.
PDB entry 8ysw: phosphinothricin dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Lysinibacillus composti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-03-23
Authors: Xue, Y.P., Cheng, F., Zhou, S.P., Xu, J.M., Jin, L.Q., Ma, C.J., Zheng, Y.G.
PDB entry 8ysx: canine immunoproteasome 20S subunit in complex with compound 2
Classification: HYDROLASE
Source organism: Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-03-24
Authors: Kashima, A., Arai, Y.
PDB entry 8ysy: Ubiquitin(native) from Oryza sativa subsp. japonica (Rice)
Classification: PLANT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: SOLUTION NMR
Deposited: 2024-03-24
Authors: Adhada, S.T., Sarma, S.P.
PDB entry 8ysz: Cryo-EM structure of the complex IR with three IGF-II
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-03-24
Authors: Xi, Z.
PDB entry 8yt0: Structure of CylI in complex with acyl-SNAC substrate
Classification: TRANSFERASE
Source organism: Cylindrospermum licheniforme UTEX B 2014
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-24
Authors: Wang, H.Q., Xiang, Z.
PDB entry 8yt1: Crystal structure of ACMSD in complex with malonate
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2024-03-24
Authors: Yang, Y., Liu, A.
PDB entry 8yt2: Crystal structure of ACMSD mutant W194A
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-03-24
Authors: Yang, Y., Liu, A.
PDB entry 8yt4: Structure of Aquifex aeolicus Lumazine Synthase by Cryo-Electron Microscopy to 1.42 Angstrom Resolution
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aquifex aeolicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.42 Å
Deposited: 2024-03-24
Authors: Savva, C.G., Sobhy, M.A., De Biasio, A., Hamdan, S.M.
PDB entry 8yt5: SP1746 treated with EDTA, in complex with ADP
Classification: HYDROLASE
Source organism: Streptococcus pneumoniae TIGR4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-03-25
Authors: Jin, Y., Niu, L., Ke, J.
PDB entry 8yt6: Human PPAR alpha ligand binding domain in complex with a 1H-pyrazolo[3,4-b]pyridine-derived compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-03-25
Authors: Tachibana, K., Morie, T., Fukuda, S., Yuzuriha, T., Ishimoto, K., Nunomura, K., Lin, B., Miyachi, H., Oki, H., Kawahara, K., Meguro, K., Nakagawa, S., Tsujikawa, K., Akai, S., Doi, T., Yoshida, T.
PDB entry 8yt7: Crystal structure of the MAM domain of Spodoptera frugiperda Scavenger Receptor-C
Classification: MEMBRANE PROTEIN
Source organism: Spodoptera frugiperda
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-03-25
Authors: Lan, J., Wang, C.H.
PDB entry 8yt8: Cryo-EM structure of the dystrophin glycoprotein complex
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-03-25
Authors: Wu, J.P., Yan, Z., Wan, L.
PDB entry 8yt9: Human PPAR alpha ligand binding domain in complex with a 1H-pyrazolo[3,4-b]pyridine-derived compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-03-25
Authors: Tachibana, K., Morie, T., Fukuda, S., Yuzuriha, T., Ishimoto, K., Nunomura, K., Lin, B., Miyachi, H., Oki, H., Kawahara, K., Meguro, K., Nakagawa, S., Tsujikawa, K., Akai, S., Doi, T., Yoshida, T.
PDB entry 8yta: The crystal structure of PDE8A with 1604R
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.50001 Å
Deposited: 2024-03-25
Authors: Huang, Y.-Y., Luo, H.-B.
PDB entry 8ytb: Cryo-EM structure of enterovirus A71 empty particle
Classification: VIRUS
Source organism: Enterovirus A71
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-03-25
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 8ytc: PML-RBCC dimer
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2024-03-25
Authors: Tan, Y., Li, J., Zhang, S., Zhang, Y., Cong, Y., Meng, G.
PDB entry 8ytd: Crystal Structure of TrkA D5 domain in complex with two different macrocyclic peptides
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-03-25
Authors: Yamada, T., Mihara, K., Ueda, T., Yamauchi, D., Shimizu, M., Ando, A., Mayumi, K., Nakata, Z., Mikamiyama, H.
PDB entry 8yte: Crystal Structure of TrkA D5 domain in complex with macrocyclic peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-03-25
Authors: Yamada, T., Mihara, K., Ueda, T., Yamauchi, D., Shimizu, M., Ando, A., Mayumi, K., Nakata, Z., Mikamiyama, H.
PDB entry 8ytf: Crystal structures of human IRF2BP2 RING domain in complex with VGLL4 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-03-25
Authors: Wang, G.C., Ding, J.P.
PDB entry 8ytg: Crystal structures of human IRF2BP2 RING domain in complex with IRF2 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-03-25
Authors: Wang, G.C., Ding, J.P.
PDB entry 8yth: Crystal structures of human IRF2BP2 RING domain in complex with ZBTB16 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-03-25
Authors: Wang, G.C., Ding, J.P.
PDB entry 8yti: Crystal Structure of Nucleosome-H1x Linker Histone Assembly (sticky-169a DNA fragment)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-03-26
Authors: Adhireksan, Z., Qiuye, B., Padavattan, S., Davey, C.A.
PDB entry 8ytj: Cryo-EM structure of enterovirus A71 mature virion
Classification: VIRUS
Source organism: Enterovirus A71
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-03-26
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 8ytk: Crystal structure of human prolyl-tRNA synthetase in complex with inhibitor
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.553 Å
Deposited: 2024-03-26
Authors: Luo, Z., Zhou, H.
PDB entry 8ytl: Human PPAR alpha ligand binding domain in complex with a 1H-pyrazolo[3,4-b]pyridine-derived compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-26
Authors: Tachibana, K., Morie, T., Fukuda, S., Yuzuriha, T., Ishimoto, K., Nunomura, K., Lin, B., Miyachi, H., Oki, H., Kawahara, K., Meguro, K., Nakagawa, S., Tsujikawa, K., Akai, S., Doi, T., Yoshida, T.
PDB entry 8ytn: Single-chain Fv antibody of E11
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-03-26
Authors: Yoshida, M., Hanazono, Y., Numoto, N., Ito, N., Oda, M.
PDB entry 8yto: Single-chain Fv antibody of E11 complex with NP-glycine
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2024-03-26
Authors: Yoshida, M., Hanazono, Y., Numoto, N., Ito, N., Oda, M.
PDB entry 8ytp: Single-chain Fv antibody of E11 complex with NP-glycine under reducing conditions
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-03-26
Authors: Yoshida, M., Hanazono, Y., Numoto, N., Ito, N., Oda, M.
PDB entry 8ytq: The structure of apoCopC from Thioalkalivibrio paradoxus
Classification: METAL BINDING PROTEIN
Source organism: Thioalkalivibrio paradoxus ARh 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-03-26
Authors: Kulikova, O.G., Solovieva, A.Y., Varfolomeeva, L.A., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8ytr: The structure of Cu(II)-CopC from Thioalkalivibrio paradoxus
Classification: METAL BINDING PROTEIN
Source organism: Thioalkalivibrio paradoxus ARh 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-26
Authors: Kulikova, O.G., Solovieva, A.Y., Varfolomeeva, L.A., Dergousova, N.I., Nikolaeva, A.Y., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8yts: The structure of the cytochrome c546/556 from Thioalkalivibrio paradoxus with unusual UV-Vis spectral features at atomic resolution
Classification: ELECTRON TRANSPORT
Source organism: Thioalkalivibrio paradoxus ARh 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2024-03-26
Authors: Varfolomeeva, L.A., Solovieva, A.Y., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8ytt: Structure of cyclohexanone monooxygenase mutant from Acinetobacter calcoaceticus
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2024-03-26
Authors: Qiang, G., Zheng, Y.C., Feng, L., Yu, H.L.
PDB entry 8ytu: Mipa-PETase from Micromonospora pattaloongensis
Classification: HYDROLASE
Source organism: Micromonospora pattaloongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2024-03-26
Authors: Hong, H., Seo, H., Park, J., Kim, K.-J.
PDB entry 8ytv: The M19 variant of Mipa-Petase from Micromonospora pattaloongensis
Classification: HYDROLASE
Source organism: Micromonospora pattaloongensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-03-26
Authors: Hong, H., Seo, H., Park, J., Kim, K.-J.
PDB entry 8ytw: Kubu-PETase from Kutzneria buriramensis
Classification: HYDROLASE
Source organism: Kutzneria buriramensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-03-26
Authors: Park, J., Seo, H., Hong, H., Kim, K.-J.
PDB entry 8ytx: Tubulin-RB3-TTL in complex with compound SI9
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2024-03-26
Authors: Wu, C.Y., Wang, Y.X.
PDB entry 8yty: The M12+P185V variant of Kubu-PETase from Kutzneria buriramensis
Classification: HYDROLASE
Source organism: Kutzneria buriramensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2024-03-26
Authors: Park, J., Seo, H., Hong, H., Kim, K.-J.
PDB entry 8ytz: The P185V variant of Kubu-PETase from Kutzneria buriramensis
Classification: HYDROLASE
Source organism: Kutzneria buriramensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-03-26
Authors: Park, J., Seo, H., Hong, H., Kim, K.-J.
PDB entry 8yu0: Structure of cyclohexanone monooxygenase mutant from Acinetobacter calcoaceticus
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-26
Authors: Qiang, G., Zheng, Y.C., Feng, L., Yu, H.L.
PDB entry 8yu2: Structure of cyclohexanone monooxygenase mutant from Acinetobacter calcoaceticus
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2024-03-26
Authors: Qiang, G., Zheng, Y.C., Feng, L., Yu, H.L.
PDB entry 8yu3: NMR solution structure of the 2:1 complex of a platinum(II) compound bound to Myc1234 G-quadruplex
Classification: DNA
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-03-26
Authors: Liu, W., Mao, Z.W.
PDB entry 8yu4: Structure of cyclohexanone monooxygenase mutant from Acinetobacter calcoaceticus
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-03-26
Authors: Qiang, G., Zheng, Y.C., Feng, L., Yu, H.L.
PDB entry 8yu5: The structure of non-activated thiocyanate dehydrogenase mutant with the H447Q substitution from Pelomicrobium methylotrophicum (pmTcDH H447Q)
Classification: OXIDOREDUCTASE
Source organism: Pelomicrobium methylotrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-03-26
Authors: Varfolomeeva, L.A., Shipkov, N.S., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8yu6: The structure of thiocyanate dehydrogenase mutant with the H447Q substitution from Pelomicrobium methylotrophicum (pmTcDH H447Q), activated by crystal soaking with 1mM CuCl2 and 1 mM sodium ascorbate
Classification: OXIDOREDUCTASE
Source organism: Pelomicrobium methylotrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-03-26
Authors: Varfolomeeva, L.A., Shipkov, N.S., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8yu7: Cryo-EM structure of CXCR4 tetramer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-03-26
Authors: Liu, A., Liu, Y.
PDB entry 8yu8: Human PPAR alpha ligand binding domain in complex with a 1H-pyrazolo[3,4-b]pyridine-derived compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-03-27
Authors: Tachibana, K., Morie, T., Fukuda, S., Yuzuriha, T., Ishimoto, K., Nunomura, K., Lin, B., Miyachi, H., Oki, H., Kawahara, K., Meguro, K., Nakagawa, S., Tsujikawa, K., Akai, S., Doi, T., Yoshida, T.
PDB entry 8yu9: Tubulin-RB3-TTL in complex with compound SI10
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2024-03-27
Authors: Wu, C.Y., Wang, Y.X.
PDB entry 8yua: Tubulin-RB3-TTL in complex with compound SI10
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2024-03-27
Authors: Wu, C.Y., Wang, Y.X.
PDB entry 8yub: Crystal structure of SARS-CoV-2 ConSp RBD in complex with neutralizing antibody CC25.4 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2024-03-27
Authors: Kang, J.M., Yuan, M., Han, B.W., Wilson, I.A.
PDB entry 8yuc: Crystal structure of SARS-CoV-2 ConSp RBD in complex with antibodies PDI222 Fab and COVA1-16 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 4.51 Å
Deposited: 2024-03-27
Authors: Kang, J.M., Yuan, M., Han, B.W., Wilson, I.A.
PDB entry 8yud: Crystal structure of Xylose isomerase from Streptomyces avermitilis
Classification: ISOMERASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2024-03-27
Authors: Nam, K.H.
PDB entry 8yue: Crystal structure of the kinesin-14 motor protein from Drosophila melanogaster
Classification: MOTOR PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2024-03-27
Authors: Wei, Y., Jobichen, C., Imasaki, T., Nitta, R., Wang, M.Y., Sivaraman, J., Endow, S.A.
PDB entry 8yuf: Crystal structure of HEPN (Q64A) toxin
Classification: TOXIN
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-03-27
Authors: Jin, C., Jeon, C., Kim, D.H., Lee, B.J.
PDB entry 8yug: X-ray Crystal structure of glycoside hydrolase family 18 chitinase from Serratia marcescens hexahistigine-tagged SmChiB apo enzyme
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-03-27
Authors: Ebi, S., Sunagawa, N., Yamaguchi, S., Igarashi, K.
PDB entry 8yuh: X-ray Crystal structure of glycoside hydrolase family 18 chitinase from Serratia marcescens hexahistigine-tagged SmChiB with allosamidin
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-03-27
Authors: Ebi, S., Sunagawa, N., Yamaguchi, S., Igarashi, K.
PDB entry 8yui: X-ray Crystal structure of glycoside hydrolase family 18 chitinase from Serratia marcescens hexahistigine-tagged SmChiB with triacetyl chitotriose
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2024-03-27
Authors: Ebi, S., Sunagawa, N., Yamaguchi, S., Igarashi, K.
PDB entry 8yuk: Structure of a triple-helix region of human collagen type VII
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-03-27
Authors: Zhu, Y., Yang, X., Sun, F.
PDB entry 8yum: Ubiquitin(late folding intermediate, F') from Oryza sativa subsp. japonica (Rice)
Classification: PLANT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: SOLUTION NMR
Deposited: 2024-03-27
Authors: Adhada, S.T., Sarma, S.P.
PDB entry 8yun: The crystal structure of HNBP001-HCP
Classification: STRUCTURAL PROTEIN
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-03-27
Authors: Chen, C.Z., Xia, Q.F.
PDB entry 8yuo: E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Classification: RIBOSOME
Source organism: Escherichia coli; Pseudomonas putida NBRC 14164; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2024-03-27
Authors: Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.
PDB entry 8yup: E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli BW25113; Pseudomonas putida NBRC 14164; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2024-03-28
Authors: Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.
PDB entry 8yuq: E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli BW25113; Pseudomonas putida NBRC 14164; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2024-03-27
Authors: Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.
PDB entry 8yur: E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli BW25113; Pseudomonas putida NBRC 14164; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2024-03-27
Authors: Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.
PDB entry 8yus: E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli BW25113; Pseudomonas putida NBRC 14164; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2024-03-27
Authors: Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.
PDB entry 8yut: Cryo-EM structure of the amthamine-bound H2R-Gs complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-27
Authors: Shen, Q., Tang, X., Wen, X., Cheng, S., Xiao, P., Zang, S., Shen, D., Jiang, L., Zheng, Y., Zhang, H., Xu, H., Mao, C., Zhang, M., Hu, W., Sun, J., Chen, Z., Zhang, Y.
PDB entry 8yuu: Cryo-EM structure of the histamine-bound H3R-Gi complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-27
Authors: Shen, Q., Tang, X., Wen, X., Cheng, S., Xiao, P., Zang, S., Shen, D., Jiang, L., Zheng, Y., Zhang, H., Xu, H., Mao, C., Zhang, M., Hu, W., Sun, J., Chen, Z., Zhang, Y.
PDB entry 8yuv: Cryo-EM structure of the immepip-bound H3R-Gi complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-27
Authors: Shen, Q., Tang, X., Wen, X., Cheng, S., Xiao, P., Zang, S., Shen, D., Jiang, L., Zheng, Y., Zhang, H., Xu, H., Mao, C., Zhang, M., Hu, W., Sun, J., Chen, Z., Zhang, Y.
PDB entry 8yv3: The heterotrimer structure of peptides derived from human collagen type I
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-03-27
Authors: Zhu, Y., Yang, X., Sun, F.
PDB entry 8yv4: The crystal structure of G.acetivorans RNA kinase Ark1
Classification: TRANSFERASE
Source organism: Geoglobus acetivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-03-27
Authors: Cao, C.L., Gan, J.H.
PDB entry 8yv5: The crystal structure of G. acetivorans RNA kinase Ark1 in complex with ATP
Classification: TRANSFERASE
Source organism: Geoglobus acetivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-03-28
Authors: Cao, C.L., Gan, J.H.
PDB entry 8yv6: Crystal structure of LC3B in complex with Influenza A virus M2 peptide
Classification: VIRUS
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-03-28
Authors: Murata, D., Novoa, C., Beale, R., Akutsu, M.