LiteFold/PDB huggingface dataset:
PDB entry 8r9j: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 822 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9k: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 922 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9l: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1036 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9m: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1143 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9n: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1224 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9o: A soakable crystal form of human CDK7 in complex with AMP-PNP
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2023-11-30
Authors: Mukherjee, M., Cleasby, A.
PDB entry 8r9p: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1297 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9q: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1373 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9r: GDP-bound state of S. putrefaciens FlhF
Classification: SIGNALING PROTEIN
Source organism: Shewanella putrefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2023-11-30
Authors: Mais, C.N., Dornes, A., Bange, G.
PDB entry 8r9s: A soakable crystal form of human CDK7 in complex with AMP-PNP
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-11-30
Authors: Mukherjee, M., Cleasby, A.
PDB entry 8r9t: Crystal structure of the C-terminal domain of Chlamydomonas reinhardtii CFAP410
Classification: PROTEIN BINDING
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Stadler, A., Dong, G.
PDB entry 8r9u: A soakable crystal form of human CDK7 in complex with AMP-PNP
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.937 Å
Deposited: 2023-11-30
Authors: Mukherjee, M., Cleasby, A.
PDB entry 8r9v: CryoEM structure of the primed actomyosin-5a complex
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-11-30
Authors: Klebl, D.P., McMillan, S.N., Risi, C., Forgacs, E., Virok, B., Atherton, J.L., Stofella, M., Winkelmann, D.A., Sobott, F., Galkin, V.E., Knight, P.J., Muench, S.P., Scarff, C.A., White, H.D.
PDB entry 8r9w: PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Classification: VIRAL PROTEIN
Source organism: Deltacoronavirus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-30
Authors: Debski-Antoniak, O., Hurdiss, D.L.
PDB entry 8r9x: Local refinement of the PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Classification: VIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-30
Authors: Debski-Antoniak, O., Hurdiss, D.L.
PDB entry 8r9y: S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Porcine deltacoronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-30
Authors: Debski-Antoniak, O., Hurdiss, D.L.
PDB entry 8r9z: S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 46E6 antibody Fab fragments
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Porcine deltacoronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-11-30
Authors: Debski-Antoniak, O., Hurdiss, D.L.
PDB entry 8ra0: Crystal structure of CysF
Classification: BIOSYNTHETIC PROTEIN
Source organism: Kitasatospora cystarginea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-11-30
Authors: Levy, C.W.
PDB entry 8ra1: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 312 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8ra2: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 392 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8ra3: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 462 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8ra4: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 527 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8ra5: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 590 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8ra6: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 655 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8ra7: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 722 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8ra8: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 802 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8ra9: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 907 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8raa: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1023 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8rab: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1112 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8rac: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1174 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8rad: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1235 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8rae: Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1303 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Barends, T., Schlichting, I.
PDB entry 8raf: Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis point mutant R90I (holo form)
Classification: TRANSFERASE
Source organism: Haliscomenobacter hydrossis DSM 1100
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-01
Authors: Matyuta, I.O., Bakunova, A.K., Minyaev, M.E., Popov, V.O., Bezsudnova, E.Y., Boyko, K.M.
PDB entry 8rag: Crystal structure of class Ie ribonucleotide reductase R2 subunit without Y150 modification from Gardnerella vaginalis
Classification: OXIDOREDUCTASE
Source organism: Gardnerella vaginalis ATCC 14019
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-01
Authors: John, J., Hogbom, M.
PDB entry 8rah: Crystal structure of class Ie ribonucleotide reductase R2 subunit with post-translational modification of Y150 into a DOPA from Gardnerella vaginalis
Classification: OXIDOREDUCTASE
Source organism: Gardnerella vaginalis ATCC 14019
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-01
Authors: John, J., Hogbom, M.
PDB entry 8rai: Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis point mutant R90I complexed with phenylhydrazine
Classification: TRANSFERASE
Source organism: Haliscomenobacter hydrossis DSM 1100
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-01
Authors: Matyuta, I.O., Bakunova, A.K., Minyaev, M.E., Popov, V.O., Bezsudnova, E.Y., Boyko, K.M.
PDB entry 8raj: NMR structure of PKS docking domains
Classification: PROTEIN BINDING
Source organism: Methylorubrum extorquens AM1
Experimental method: SOLUTION NMR
Deposited: 2023-12-01
Authors: Scat, S., Weissman, K.J., Chagot, B.
PDB entry 8rak: Crystal structure of human Dihydroorotate Dehydrogenase in complex with the inhibitor 2-Hydroxy-N-(2-isopropyl-5-methyl-4-(pyridin-4-yloxy)phenyl)pyrazolo[1,5-a]pyridine-3-carboxamide
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-12-01
Authors: Alberti, M., Miggiano, R.
PDB entry 8ral: CL3E peptide bound to the I-Ab murine MHC class II receptor
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-01
Authors: Erausquin, E., Urdiciain, A., Serra, P., Santamaria, P., Lopez-Sagaseta, J.
PDB entry 8ram: Structure of Sen1 bound RNA Polymerase II pre-termination complex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-01
Authors: Rengachari, S., Lidscreiber, M., Cramer, P.
PDB entry 8ran: Structure of Sen1-RNA complex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-12-01
Authors: Rengachari, S., Lidscreiber, M., Cramer, P.
PDB entry 8rao: Structure of Sen1-ADP.BeF3-RNA complex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-12-01
Authors: Rengachari, S., Lidscreiber, M., Cramer, P.
PDB entry 8rap: Structure of Sen1-ADP.BeF3 bound RNA Polymerase II pre-termination complex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-12-01
Authors: Rengachari, S., Lidscreiber, M., Cramer, P.
PDB entry 8raq: Crystal structure of Mycobacterium tuberculosis MmaA1 with S-adenosyl methionine (SAM)
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-01
Authors: Chaudhary, B., Kobakhidze, G., Wachelder, L., Mazumdar, P.A., Madhurantakam, C., Dong, G.
PDB entry 8rar: Crystal structure of chimeric human carbonic anhydrase IX with N-butyl-4-chloro-2-(cyclohexylsulfanyl)-5-sulfamoylbenzamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-12-01
Authors: Manakova, E.N., Smirnov, A., Paketuryte, V., Grazulis, S.
PDB entry 8ras: Plastid-encoded RNA polymerase transcription elongation complex
Classification: GENE REGULATION
Source organism: Sinapis alba; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2023-12-01
Authors: Webster, M.W., Pramanick, I., Vergara-Cruces, A.
PDB entry 8rat: EFFECTS OF TEMPERATURE ON PROTEIN STRUCTURE AND DYNAMICS: X-RAY CRYSTALLOGRAPHIC STUDIES OF THE PROTEIN RIBONUCLEASE-A AT NINE DIFFERENT TEMPERATURES FROM 98 TO 320 K
Classification: HYDROLASE (NUCLEIC ACID,RNA)
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 1991-08-13
Authors: Tiltonjunior, R.F., Dewan, J.C., Petsko, G.A.
PDB entry 8rau: The crystal structure of DNA-bound human MutSbeta (MSH2/MSH3) in the canonical mismatch bound conformation with ADP bound in MSH2 and MSH3
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-12-01
Authors: Thomsen, M., Neudegger, T., Thieulin-Pardo, G., Blaesse, M., Costanzi, E., Steinbacher, S., Plotnikov, N.V., Dominguez, C., Iyer, R.R., Wilkinson, H.A., Monteagudo, E., Haque, T.S., Prasad, B.C., Finley, M., Boudet, J., Vogt, T.F., Felsenfeld, D.P.
PDB entry 8rav: The crystal structure of DNA-bound human MutSbeta (MSH2/MSH3) in the canonical mismatch bound conformation with ADP bound in MSH2
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2023-12-01
Authors: Thomsen, M., Neudegger, T., Thieulin-Pardo, G., Blaesse, M., Costanzi, E., Steinbacher, S., Plotnikov, N.V., Dominguez, C., Iyer, R.R., Wilkinson, H.A., Monteagudo, E., Haque, T.S., Prasad, B.C., Finley, M., Boudet, J., Vogt, T.F., Felsenfeld, D.P.
PDB entry 8raw: The crystal structure of DNA-bound human MutSbeta (MSH2/MSH3_G901D) in the canonical mismatch bound conformation with ADP bound in MSH2
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-12-01
Authors: Thomsen, M., Neudegger, T., Thieulin-Pardo, G., Blaesse, M., Costanzi, E., Steinbacher, S., Plotnikov, N.V., Dominguez, C., Iyer, R.R., Wilkinson, H.A., Monteagudo, E., Haque, T.S., Prasad, B.C., Finley, M., Boudet, J., Vogt, T.F., Felsenfeld, D.P.
PDB entry 8rax: The crystal structure of DNA-bound human MutSbeta (MSH2_G674D/MSH3) in the canonical mismatch bound conformation, nucleotide free
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.162 Å
Deposited: 2023-12-01
Authors: Thomsen, M., Neudegger, T., Thieulin-Pardo, G., Blaesse, M., Costanzi, E., Steinbacher, S., Plotnikov, N.V., Dominguez, C., Iyer, R.R., Wilkinson, H.A., Monteagudo, E., Haque, T.S., Prasad, B.C., Finley, M., Boudet, J., Vogt, T.F., Felsenfeld, D.P.
PDB entry 8ray: ParA in complex with ATP
Classification: REPLICATION
Source organism: Myxococcus xanthus DK 1622
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-12-01
Authors: Mais, C.-N., Bange, G.
PDB entry 8raz: The crystal structure of DNA-bound human MutSbeta (MSH2_E749A/MSH3_E976A) in the canonical mismatch bound conformation with ADP bound in MSH2 and MSH3
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.843 Å
Deposited: 2023-12-01
Authors: Thomsen, M., Neudegger, T., Thieulin-Pardo, G., Blaesse, M., Costanzi, E., Steinbacher, S., Plotnikov, N.V., Dominguez, C., Iyer, R.R., Wilkinson, H.A., Monteagudo, E., Haque, T.S., Prasad, B.C., Finley, M., Boudet, J., Vogt, T.F., Felsenfeld, D.P.
PDB entry 8rb0: The crystal structure of DNA-bound human MutSbeta (MSH2_E749A/MSH3) in the canonical mismatch bound conformation with ADP bound in MSH2
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2023-12-01
Authors: Thomsen, M., Neudegger, T., Thieulin-Pardo, G., Blaesse, M., Costanzi, E., Steinbacher, S., Plotnikov, N.V., Dominguez, C., Iyer, R.R., Wilkinson, H.A., Monteagudo, E., Haque, T.S., Prasad, B.C., Finley, M., Boudet, J., Vogt, T.F., Felsenfeld, D.P.
PDB entry 8rb1: The crystal structure of DNA-bound human MutSbeta (MSH2_K675R/MSH3_K902R) in the canonical mismatch bound conformation with ADP bound in MSH2 and MSH3
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.085 Å
Deposited: 2023-12-01
Authors: Thomsen, M., Neudegger, T., Thieulin-Pardo, G., Blaesse, M., Costanzi, E., Steinbacher, S., Plotnikov, N.V., Dominguez, C., Iyer, R.R., Wilkinson, H.A., Monteagudo, E., Haque, T.S., Prasad, B.C., Finley, M., Boudet, J., Vogt, T.F., Felsenfeld, D.P.
PDB entry 8rb2: The crystal structure of DNA-bound human MutSbeta (MSH2_E749A/MSH3_E976A) in the canonical mismatch bound conformation with ADP bound in MSH2
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.526 Å
Deposited: 2023-12-01
Authors: Thomsen, M., Neudegger, T., Thieulin-Pardo, G., Blaesse, M., Costanzi, E., Steinbacher, S., Plotnikov, N.V., Dominguez, C., Iyer, R.R., Wilkinson, H.A., Monteagudo, E., Haque, T.S., Prasad, B.C., Finley, M., Boudet, J., Vogt, T.F., Felsenfeld, D.P.
PDB entry 8rb3: Structure of the PNMA2 capsid
Classification: VIRUS LIKE PARTICLE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-02
Authors: Erlendsson, S., Xu, J., Shepherd, J.D., Briggs, J.A.G.
PDB entry 8rb4: Structure of the five-fold capsomer of the PNMA2 capsid
Classification: VIRUS LIKE PARTICLE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-02
Authors: Erlendsson, S., Xu, J., Shepherd, J.D., Briggs, J.A.G.
PDB entry 8rb5: Structure of the three-fold capsomer of the PNMA2 capsid
Classification: VIRUS LIKE PARTICLE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-03
Authors: Erlendsson, S., Xu, J., Shepherd, J.D., Briggs, J.A.G.
PDB entry 8rb6: Structure of Aldo-Keto Reductase 1C3 (AKR1C3) in complex with an inhibitor M689, with the 3-hydroxy-benzoisoxazole moiety. Resolution 2.0A
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-03
Authors: Frydenvang, K., Mirza, O.A.
PDB entry 8rb7: Structure of the two-fold capsomer of the PNMA2 capsid
Classification: VIRUS LIKE PARTICLE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-03
Authors: Erlendsson, S., Xu, J., Shepherd, J.D., Briggs, J.A.G.
PDB entry 8rb8: Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, purified with 2-ME/TCEP, NADH added
Classification: MEMBRANE PROTEIN
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-12-03
Authors: Zhang, L., Einsle, O.
PDB entry 8rb9: Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, NADH added
Classification: MEMBRANE PROTEIN
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-12-03
Authors: Zhang, L., Einsle, O.
PDB entry 8rba: p53-Y220C Core Domain Covalently Bound to 2,5,6-trifluoropyridine-3-carbonitrile Soaked at 5 mM
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-12-04
Authors: Stahlecker, J., Klett, T., Stehle, T., Boeckler, F.M.
PDB entry 8rbb: p53-Y220C Core Domain Covalently Bound to 2,5,6-trifluoropyridine-3-carbonitrile Soaked at 40 mM
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-12-04
Authors: Stahlecker, J., Klett, T., Stehle, T., Boeckler, F.M.
PDB entry 8rbc: p53-Y220C Core Domain Covalently Bound to 3-amino-5-chloropyrazine-2,6-dicarbonitrile Soaked at 5 mM
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2023-12-04
Authors: Stahlecker, J., Klett, T., Stehle, T., Boeckler, F.M.
PDB entry 8rbd: Crystal structure of Mycobacterium tuberculosis MmaA1 with Sinefungin (SFG)
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-12-04
Authors: Kobakhidze, G., Wachelder, L., Chaudhary, B., Mazumdar, P.A., Madhurantakam, C., Dong, G.
PDB entry 8rbe: Crystal structure of Mycobacterium tuberculosis MmaA1 in apo form
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-04
Authors: Kobakhidze, G., Wachelder, L., Chaudhary, B., Mazumdar, P.A., Madhurantakam, C., Dong, G.
PDB entry 8rbf: CryoEM structure of the post-powerstroke actomyosin-5a complex
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-12-04
Authors: Klebl, D.P., McMillan, S.N., Risi, C., Forgacs, E., Virok, B., Atherton, J.L., Stofella, M., Winkelmann, D.A., Sobott, F., Galkin, V.E., Knight, P.J., Muench, S.P., Scarff, C.A., White, H.D.
PDB entry 8rbg: CryoEM structure of primed myosin-5a (ADP-Pi state)
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2023-12-04
Authors: Klebl, D.P., McMillan, S.N., Risi, C., Forgacs, E., Virok, B., Atherton, J.L., Stofella, M., Winkelmann, D.A., Sobott, F., Galkin, V.E., Knight, P.J., Muench, S.P., Scarff, C.A., White, H.D.
PDB entry 8rbh: Crystal structure of the kelch domain of human KLHL12 in complex with PEF1 peptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-12-04
Authors: Ramdass, A.E., Chen, Z., Dalietou, E.V., Manning, C.E., Bullock, A.N.
PDB entry 8rbi: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124
Classification: LYASE
Source organism: Paradendryphiella salina
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2023-12-04
Authors: Wilkens, C.
PDB entry 8rbj: Structure of fungal tRNA ligase in complex with RNA
Classification: LIGASE
Source organism: Thermochaetoides thermophila; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2023-12-04
Authors: Kopp, J., Koehler, S., Peschek, J.
PDB entry 8rbk: Bos taurus PRMT9 in the presence of SAH
Classification: TRANSFERASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2023-12-04
Authors: Bonnefond, L., Cavarelli, J.
PDB entry 8rbl: Crystal structure of Mycobacterium tuberculosis MmaA1 with S-adenosyl homocysteine
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-12-04
Authors: Kobakhidze, G., Wachelder, L., Chaudhary, B., Mazumdar, P.A., Madhurantakam, C., Dong, G.
PDB entry 8rbm: Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, ferricyanide oxidized
Classification: MEMBRANE PROTEIN
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2023-12-04
Authors: Zhang, L., Einsle, O.
PDB entry 8rbo: Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp conformation
Classification: TRANSCRIPTION
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-12-04
Authors: Tarau, D.M., Reichelt, R., Heiss, F.B., Pilsl, M., Hausner, W., Engel, C., Grohmann, D.
PDB entry 8rbp: Crystal structure of chimeric human carbonic anhydrase IX with 4-chloro-2-(cyclohexylsulfanyl)-N-(2-hydroxyethyl)-5-sulfamoylbenzamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-12-04
Authors: Manakova, E.N., Smirnov, A., Paketuryte, V., Grazulis, S.
PDB entry 8rbq: Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, dithionite reduced
Classification: MEMBRANE PROTEIN
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-12-04
Authors: Zhang, L., Einsle, O.
PDB entry 8rbs: Emiliania huxleyi virus 201 (EhV-201) asymmetrical unit of capsid proteins predicted by AlphaFold2 fitted into the cryo-EM density of EhV-201 virion composite map.
Classification: VIRUS
Source organism: Emiliania huxleyi virus 201
Experimental method: ELECTRON MICROSCOPY
Resolution: 18 Å
Deposited: 2023-12-04
Authors: Homola, M., Buttner, C.R., Fuzik, T., Novacek, J., Chaillet, M., Forster, F., Plevka, P.
PDB entry 8rbt: Emiliania huxleyi virus 201 (EhV-201) capsid proteins predicted by AlphaFold2 fitted into a cryo-EM density map of the EhV-201 virion capsid.
Classification: VIRUS
Source organism: Emiliania huxleyi virus 201
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2023-12-04
Authors: Homola, M., Buttner, C.R., Fuzik, T., Novacek, J., Chaillet, M., Forster, F., Plevka, P.
PDB entry 8rbu: Crystal structure of HLA-A*11:01 in complex with SVLNDILARL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-12-05
Authors: Ahn, Y.M., Maddumage, J.C., Szeto, C., Gras, S.
PDB entry 8rbv: SARS-CoV-2 Spike-derived peptide S976-984 S982A mutant (VLNDILARL) presented by HLA-A*02:01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-12-05
Authors: Ahn, Y.M., Maddumage, J.C., Szeto, C., Gras, S.
PDB entry 8rbx: Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; Trichoplusia ni; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-12-05
Authors: Fianu, I., Ochmann, M., Walshe, J.L., Cramer, P.
PDB entry 8rby: The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.26
Classification: ANTIVIRAL PROTEIN
Source organism: Camelus dromedarius; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-05
Authors: Casasnovas, J.M., Fernandez, L.A., Silva, K.
PDB entry 8rbz: Structure of Integrator-PP2A-SOSS-CTD post-termination complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-05
Authors: Fianu, I., Ochmann, M., Walshe, J.L., Cramer, P.
PDB entry 8rc0: Structure of the human 20S U5 snRNP
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-05
Authors: Schneider, S., Galej, W.P.
PDB entry 8rc1: MAP7 MTBD (microtubule binding domain) decorated microtubule protofilament
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-05
Authors: Bangera, M., Moores, C.A.
PDB entry 8rc2: DNA bound type IV-A3 CRISPR effector complex from K. pneumoniae
Classification: GENE REGULATION
Source organism: Klebsiella pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-05
Authors: Miksys, A., Cepaite, R., Malinauskaite, L., Pausch, P.
PDB entry 8rc3: DNA bound type IV-A1 CRISPR effector complex from P. oleovorans
Classification: GENE REGULATION
Source organism: Pseudomonas oleovorans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-05
Authors: Miksys, A., Cepaite, R., Malinauskaite, L., Pausch, P.
PDB entry 8rc4: Structure of Integrator-PP2A complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-06
Authors: Fianu, I., Ochmann, M., Walshe, J.L., Cramer, P.
PDB entry 8rc5: Complex between the RecA-like Sak4 SSAP and the SaPI2 Stl master regulator
Classification: RECOMBINATION
Source organism: Staphylococcus aureus; Staphylococcus phage 52A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-12-06
Authors: Debiasi-Anders, G., Mir-Sanchis, I.
PDB entry 8rc6: Cryo-EM structure of hexameric BTB domain of Drosophila CG6765 protein
Classification: TRANSCRIPTION
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-06
Authors: Bonchuk, A.N., Naschberger, A., Baradaran, R.
PDB entry 8rc7: The structure of membrane-active antibiotic cyclodecapeptide gramicidin S in complex with urea
Classification: ANTIBIOTIC
Source organism: Brevibacillus brevis
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2023-12-06
Authors: Dodson, E.J.
PDB entry 8rc8: W-formate dehydrogenase from Desulfovibrio vulgaris - Co-crystallized with Formate and Exposed to air for 0 min
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 2.005 Å
Deposited: 2023-12-06
Authors: Vilela-Alves, G., Manuel, R.R., Pereira, I.C., Romao, M.J., Mota, C.
PDB entry 8rc9: W-formate dehydrogenase from Desulfovibrio vulgaris - Co-crystallized with Formate and Exposed to air for 2 h
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2023-12-06
Authors: Vilela-Alves, G., Manuel, R.R., Pereira, I.C., Romao, M.J., Mota, C.
PDB entry 8rca: W-formate dehydrogenase from Desulfovibrio vulgaris - Co-crystallized with Formate and Reoxidized by exposure to air for 1 h in the absence of Formate
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 1.664 Å
Deposited: 2023-12-06
Authors: Vilela-Alves, G., Manuel, R.R., Pereira, I.C., Romao, M.J., Mota, C.
PDB entry 8rcb: W-formate dehydrogenase from Desulfovibrio vulgaris - Co-crystallized with Formate and Reoxidized by exposure to air (in a not degassed drop) for 34 min in the presence of Formate
Classification: OXIDOREDUCTASE
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-12-06
Authors: Vilela-Alves, G., Manuel, R.R., Pereira, I.C., Romao, M.J., Mota, C.
PDB entry 8rcc: W-formate dehydrogenase from Desulfovibrio vulgaris - aerobic soaked with 48 bar CO2 for 1 min
Classification: OXIDOREDUCTASE
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2023-12-06
Authors: Vilela-Alves, G., Carpentier, P., Manuel, R.R., Pereira, I.C., Romao, M.J., Mota, C.
PDB entry 8rcd: RAD51 nucleoprotein filament on abasic single-stranded DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-06
Authors: Appleby, R., Pellegrini, L.
PDB entry 8rce: Crystal structure of PPAR alfa Ligand Binding Domain in complex with the ligand LBB78
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-12-06
Authors: Capelli, D., Montanari, R.
PDB entry 8rcf: RAD51 nucleoprotein filament on double-stranded abasic DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-06
Authors: Appleby, R., Pellegrini, L.
PDB entry 8rcg: W-formate dehydrogenase M405S from Desulfovibrio vulgaris
Classification: OXIDOREDUCTASE
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 2.005 Å
Deposited: 2023-12-06
Authors: Vilela-Alves, G., Manuel, R.R., Pereira, I.C., Romao, M.J., Mota, C.
PDB entry 8rch: CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, overall refinement
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-06
Authors: Anandapadamanaban, M., Hay, I.M., Perisic, O., Williams, R.L.
PDB entry 8rci: Human p53 DNA-binding domain bound to DARPin C10
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-12-06
Authors: Balourdas, D.I., Muenick, P., Strubel, A., Knapp, S., Dotsch, V., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 8rck: CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, Focused on one protomer copy.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-06
Authors: Anandapadamanaban, M., Hay, I.M., Perisic, O., Williams, R.L.
PDB entry 8rcl: Escherichia coli paused disome complex (Non-rotated disome interface class 1)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-12-06
Authors: Fluegel, T., Schacherl, M.
PDB entry 8rcm: Escherichia coli paused disome complex (Non-rotated disome interface class 2)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2023-12-06
Authors: Fluegel, T., Schacherl, M.
PDB entry 8rcn: CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, Focused region of mTOR and RAPTOR on one protomer copy.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-06
Authors: Anandapadamanaban, M., Hay, I.M., Perisic, O., Williams, R.L.
PDB entry 8rco: Structure of Human Serum Albumin in complex with Aristolochic Acid II at 1.9 A resolution
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-06
Authors: Pomyalov, S., Sidorenko, V.S., Grollman, A.P., Shoham, G.
PDB entry 8rcp: Structure of Human Serum Albumin in complex with Myristic Acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-06
Authors: Pomyalov, S., Sidorenko, V.S., Grollman, A.P., Shoham, G.
PDB entry 8rcq: Structural flexibility of Nucleoprotein of the Toscana virus in the presence of a nanobody.
Classification: VIRAL PROTEIN
Source organism: Lama glama; Toscana virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2023-12-06
Authors: Papageorgiou, N., Ferron, F., Coutard, B., Lichiere, J., Baklouti, A.
PDB entry 8rcr: human TRPM4 in SMA apo
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-07
Authors: Ekundayo, B., Prakash, A., Christian, G., Anne, F.H., Sabrina, G., Mey, B., Daniela, R., Martin, L., Jean, S.R., Henning, S., Hugues, A., Dongchun, N.
PDB entry 8rcs: Escherichia coli paused disome complex (Rotated disome interface class 1)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.46 Å
Deposited: 2023-12-07
Authors: Fluegel, T., Schacherl, M.
PDB entry 8rct: Escherichia coli paused disome complex (Rotated disome interface class 2)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.32 Å
Deposited: 2023-12-07
Authors: Fluegel, T., Schacherl, M.
PDB entry 8rcu: human TRPM4 in SMA IBA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-12-07
Authors: Ekundayo, B., Prakash, A., Christian, G., Anne, F.H., Sabrina, G., Mey, B., Daniela, R., Martin, L., Jean, S.R., Henning, S., Hugues, A., Dongchun, N.
PDB entry 8rcv: Crystal structure of HLA B*13:01 in complex with SVLNDIFSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-12-07
Authors: Ahn, Y.M., Maddumage, J.C., Szeto, C., Gras, S.
PDB entry 8rcw: Crystal structure of the Mycobacterium tuberculosis regulator VirS (N-terminal fragment 4-208) in complex with the lead compound SMARt751
Classification: TRANSCRIPTION
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.692 Å
Deposited: 2023-12-07
Authors: Grosse, C., Sigoillot, M., Megalizzi, V., Tanina, A., Willand, N., Baulard, A.R., Wintjens, R.
PDB entry 8rcx: Crystal structure of the Mycobacterium tuberculosis regulator VirS (N-terminal fragment 4-208) in complex with the drug candidate alpibectir
Classification: TRANSCRIPTION
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.494 Å
Deposited: 2023-12-07
Authors: Edoo, Z., Frita, R., Grosse, C., Bourotte, M., Moune, M., Antoine, R., Trebosc, V., Schellhorn, B., Dreneau, A., Hofmann, L., Kemmer, C., Lociuro, S., Dale, G.E., Jung, F., Perez-Herran, E., Mendoza, A., Rebollo Lopez, M.J., Ghidelli-Disse, S., Drewes, G., Mathys, V., Soetaert, K., Megalizzi, V., Wintjens, R., Barros Aguirre, D., Remuinan, M.D., Gitzinger, M., Deprez, B., Willand, N., Pieren, M., Baulard, A.R.
PDB entry 8rcy: L-SIGN CRD in complex with Man84.
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-12-07
Authors: Thepaut, M., Bouchikri, C., Pollastri, S., Bernardi, A., Fieschi, F.
PDB entry 8rcz: Structure of the enoyl-ACP reductase FabV from Pseudomonas aeruginosa with NADH cofactor
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-12-07
Authors: Vandebroek, L., Van Olmen, F., Voet, A.R.D., Verwilst, P.
PDB entry 8rd0: HUWE1 WWE domain in complex with compound 3
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.765 Å
Deposited: 2023-12-07
Authors: Muenzker, L., Boettcher, J.
PDB entry 8rd1: HUWE1 WWE domain in complex with compound 4
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.896 Å
Deposited: 2023-12-07
Authors: Muenzker, L., Zak, K.M., Boettcher, J.
PDB entry 8rd2: Trypanosoma brucei Invariant Surface Glycoprotein 75 (ISG75)
Classification: IMMUNOSUPPRESSANT
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-12-07
Authors: Stodkilde-Jorgensen, K., Mikkelsen, J.H.
PDB entry 8rd3: Crystal structure of Saccharomyces cerevisiae Nmd4 protein bound to Upf1 helicase domain
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.402 Å
Deposited: 2023-12-07
Authors: Barbarin-Bocahu, I., Graille, M.
PDB entry 8rd4: Telomeric RAP1:DNA-PK complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-12-07
Authors: Eickhoff, P., Fisher, C.E.L., Inian, O., Guettler, S., Douglas, M.E.
PDB entry 8rd5: Crystal structure of Kemp Eliminase HG3.R5 with bound transition state analog 6-nitrobenzotriazole
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-12-07
Authors: Schaub, D., Schwander, T., Hueppi, S., Buller, R.M.
PDB entry 8rd6: the C-terminal domain of TonB protein from Salmonella enterica.
Classification: TRANSPORT PROTEIN
Source organism: Salmonella enterica
Experimental method: SOLUTION NMR
Deposited: 2023-12-07
Authors: Iwai, H., Ciragan, A., Oeemig, J.S.
PDB entry 8rd7: HUWE1 WWE domain in complex with ADP-ribose
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-12-07
Authors: Muenzker, L., Zak, K.M., Boettcher, J.
PDB entry 8rd8: Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
Classification: RIBOSOME
Source organism: Psychrobacter urativorans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2023-12-07
Authors: Helena-Bueno, K., Rybak, M.Y., Gagnon, M.G., Hill, C.H., Melnikov, S.V.
PDB entry 8rd9: human TRPM4 in SMA NBA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-12-07
Authors: Ekundayo, B., Prakash, A., Christian, G., Anne, F.H., Sabrina, G., Mey, B., Daniela, R., Martin, L., Jean, S.R., Henning, S., Hugues, A., Dongchun, N.
PDB entry 8rda: Crystal structure of Haemophilus influenzae type b (Hib) DP2 oligosaccharide bound to Fab CA4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-12-07
Authors: Nonne, F., Dello Iacono, L.
PDB entry 8rdb: Isopenicillin N synthase N252E variant in complex with Fe and ACV under anaerobic conditions
Classification: OXIDOREDUCTASE
Source organism: Aspergillus nidulans FGSC A4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-12-07
Authors: Stead, A., Rabe, P., Schofield, C.J.
PDB entry 8rdc: Galectin-1 in complex with thiogalactoside derivative
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-07
Authors: Hakansson, M., Diehl, C., Peterson, K., Zetterberg, F., Nilsson, U.
PDB entry 8rdd: Crystal structure of Saccharomyces cerevisiae Nmd4 protein involved in nonsense mediated mRNA decay
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.796 Å
Deposited: 2023-12-08
Authors: Barbarin-Bocahu, I., Graille, M.
PDB entry 8rde: STRUCTURE OF THE MOUSE FCGBP DIMER PROTEIN IN ITS COMPACT CONFORMATION
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-08
Authors: Gallego, P., Hansson, G.C., Johansson, M.E.V.
PDB entry 8rdf: Crystal structure of Haemophilus influenzae type b (Hib) DP3 oligosaccharide bound to Fab CA4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-12-08
Authors: Nonne, F., Dello Iacono, L.
PDB entry 8rdg: Crystal structure of UDP-galactose 4-epimerase from Pyrococcus horikoshii with bound NAD
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-08
Authors: Thunnissen, A.M.W.H., Alvarez Quispe, C., Desmet, T.
PDB entry 8rdh: Crystal structure of UDP-galactose 4-epimerase from Pyrococcus horikoshii with bound NAD and GDP-L-fucose
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-08
Authors: Thunnissen, A.M.W.H., Alvarez Quispe, C., Desmet, T.
PDB entry 8rdi: Crystal structure of UDP-galactose 4-epimerase from Pyrococcus horikoshii containing Y145F mutation and with bound NAD and GDP-L-fucose
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-12-08
Authors: Thunnissen, A.M.W.H., Alvarez Quispe, C., Desmet, T.
PDB entry 8rdj: Plastid-encoded RNA polymerase transcription elongation complex (Integrated model)
Classification: GENE REGULATION
Source organism: Sinapis alba; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2023-12-08
Authors: Webster, M.W., Pramanick, I., Vergara-Cruces, A.
PDB entry 8rdk: Crystal structure of human Haspin (GSG2) kinase bound to MD420
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-08
Authors: Kraemer, A., Defois, M., Giraud, F., Moreau, P., Anizon, F., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8rdl: Xenorhabdin methyltransferase XrdM with SAH
Classification: TRANSFERASE
Source organism: Xenorhabdus doucetiae FRM16 = DSM 17909
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-08
Authors: Huber, E.M., Groll, M.
PDB entry 8rdm: Holomycin methyltransferase DtpM with SAH
Classification: TRANSFERASE
Source organism: Xenorhabdus doucetiae FRM16 = DSM 17909
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-12-08
Authors: Huber, E.M., Groll, M.
PDB entry 8rdn: Holomycin methyltransferase DtpM with SAH and XRD-271
Classification: TRANSFERASE
Source organism: Xenorhabdus doucetiae FRM16 = DSM 17909
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-12-08
Authors: Huber, E.M., Groll, M.
PDB entry 8rdo: Holomycin methyltransferase DtpM with SAH and XRD-271Me
Classification: TRANSFERASE
Source organism: Xenorhabdus doucetiae FRM16 = DSM 17909
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-12-08
Authors: Huber, E.M., Groll, M.
PDB entry 8rdp: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8a
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-12-08
Authors: Bischof, L., Hartmann, M.D.
PDB entry 8rdq: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8b
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-12-08
Authors: Bischof, L., Hartmann, M.D.