LiteFold/PDB huggingface dataset:
PDB entry 9nik: Structure of E1277A mutant of the acyltransferase domain of NcdE, a multi-domain NRPS protein from nocardichelin biosynthesis
Classification: TRANSFERASE
Source organism: Nocardia carnea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-02-26
Authors: Fisk, M.B., Gulick, A.M.
PDB entry 9nil: Structure of a Y1216F mutant of the acyltransferase domain of NcdE, a multi-domain NRPS protein from nocardichelin biosynthesis
Classification: TRANSFERASE
Source organism: Nocardia carnea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-02-26
Authors: Fisk, M.B., Gulick, A.M., Barrera Ramirez, J.
PDB entry 9nim: Structure of a K1305A mutant of the acyltransferase domain of NcdE, a multi-domain NRPS protein from nocardichelin biosynthesis
Classification: TRANSFERASE
Source organism: Nocardia carnea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-02-26
Authors: Fisk, M.B., Gulick, A.M., Barrera Ramirez, J.
PDB entry 9nin: The structure of human Vacuolar Protein Sorting 34 catalytic domain bound to RD-I-86
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-02-26
Authors: Cartwright, J.J., Abiodun, W.O., Dass, R., Singleton, J.D., Doukov, T., Peterson, M.A., Moody, J.D.
PDB entry 9nio: SARS-CoV-2 NSP14 bound to N-((2-ethynylthiazol-4-yl)methyl)-1H-pyrazole-3-carboxamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-26
Authors: Coker, J.A., Sun, R., Polzer, P.M., Jung, J., Stauffer, S.R.
PDB entry 9niq: Structure of Candida albicans trehalose-6-phosphate synthase in complex with 4456
Classification: TRANSFERASE
Source organism: Candida albicans SC5314
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2025-02-26
Authors: Washington, E.J., Brennan, R.G.
PDB entry 9nir: Human Ectonucleotide pyrophosphatase/phosphodiesterase family member 3 (ENPP3) inhibitor complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-02-26
Authors: Fernandez, D., Li, L., Carozza, J.A.
PDB entry 9nis: Alflutinib in complex with WT EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2025-02-26
Authors: Damghani, T., Heppner, D.E.
PDB entry 9nit: Crystal structure of Vibrio cholerae CqsR bound to L-alaninol
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2025-02-26
Authors: Guarnaccia, A.M., Neiditch, M.B.
PDB entry 9niu: Co-crystal structure of FABP7 in complex with PFO3TDA
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-26
Authors: Yang, D., Liu, J., Zeng, H., Dong, A., Arrowsmith, C.H., Edwards, A.M., Peng, H., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9niv: Crystal structure of Vibrio cholerae CqsR bound to serinol
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-02-26
Authors: Guarnaccia, A.M., Neiditch, M.B.
PDB entry 9nix: FphI, Staphylococcus aureus fluorophosphonate-binding serine hydrolases I, in complex with Carbamoyl Fluoride compound 21
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-02-26
Authors: Randall, G.T., Meden, A., Knez, D., Fellner, M.
PDB entry 9niz: FphI, Staphylococcus aureus fluorophosphonate-binding serine hydrolases I, in complex with Carbamoyl Fluoride compound 18
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-02-26
Authors: Randall, G.T., Meden, A., Knez, D., Fellner, M.
PDB entry 9nj0: GlfT2 from Nocardia brasiliensis Bound to Galf Trisaccharide
Classification: TRANSFERASE
Source organism: Nocardia brasiliensis ATCC 700358
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-02-26
Authors: Carter, A.W., Dodge, G.J., Kiessling, L.L.
PDB entry 9nj1: GlfT2 from Nocardia brasiliensis Bound to Galf Tetrasaccharide
Classification: TRANSFERASE
Source organism: Nocardia brasiliensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2025-02-26
Authors: Carter, A.W., Dodge, G.J., Kiessling, L.L.
PDB entry 9nj2: N1 neuraminidase of influenza A/Vietnam/1203/2004 H5N1 in complex with four FNI9 Fab molecules
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-02-26
Authors: Errico, J.M., Dang, H.V., Snell, G.
PDB entry 9nj3: Computationally optimized broadly reactive influenza B hemagglutinin BC2 bound by antibodies #46 and #3978
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-02-26
Authors: Dzimianski, J.V., Kunkel, I., Balasco Serrao, V.H., DuBois, R.M.
PDB entry 9nj6: Computationally optimized broadly reactive influenza B hemagglutinin BC2 bound by antibody #3978
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2025-02-26
Authors: Dzimianski, J.V., Kunkel, I., Balasco Serrao, V.H., DuBois, R.M.
PDB entry 9nj7: Almonertinib in complex with WT EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2025-02-26
Authors: Damghani, T., Heppner, D.E.
PDB entry 9nj8: Crystal structure of apo Vibrio cholerae CqsR with D198N mutation
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-02-26
Authors: Guarnaccia, A.M., Neiditch, M.B.
PDB entry 9nj9: Computationally optimized broadly reactive influenza B hemagglutinin BC2 bound by antibodies #46 and #3978
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-02-27
Authors: Dzimianski, J.V., Kunkel, I., Balasco Serrao, V.H., DuBois, R.M.
PDB entry 9nja: Computationally optimized broadly reactive influenza B hemagglutinin BC2 bound by antibody #46
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-02-27
Authors: Dzimianski, J.V., Kunkel, I., Balasco Serrao, V.H., DuBois, R.M.
PDB entry 9njb: hPNPase RNA pre-catalytic state
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.15 Å
Deposited: 2025-02-27
Authors: Unseld, O., Das, H., Hallberg, B.M.
PDB entry 9njc: hPNPase bound to PO4 in loop conformation 1
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2025-02-27
Authors: Unseld, O., Das, H., Hallberg, B.M.
PDB entry 9njd: hPNPase bound to PO4 in loop conformation 3
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2025-02-27
Authors: Unseld, O., Das, H., Hallberg, B.M.
PDB entry 9nje: hPNPase bound to PO4 in loop conformation 2
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2025-02-27
Authors: Unseld, O., Das, H., Hallberg, B.M.
PDB entry 9njf: E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-27
Authors: Singh, S., Hunt, J.F.
PDB entry 9njg: Structure of SARS-CoV-2 NSP14 bound to N-((4-cyclopropylthiazol-2-yl)methyl)-1H-pyrazolo[3,4-b]pyridine-3-carboxamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-27
Authors: Coker, J.A., Sun, R., Polzer, P.M., Jung, J., Stauffer, S.R.
PDB entry 9njh: Translocated product complex of DNA polymerase iota with DNA (template A)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2025-02-27
Authors: Frevert, Z., Freudenthal, B., Washington, M.T.
PDB entry 9nji: M298L Streptomyces coelicolor Laccase
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-02-27
Authors: Wang, J.-X., Lu, Y.
PDB entry 9njj: F195L/I200F/M298L Streptomyces coelicolor Laccase
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2025-02-27
Authors: Wang, J.-X., Lu, Y.
PDB entry 9njk: The Cryo-EM structure of the yeast Rad51-ssDNA nucleoprotein filament ADP bound state
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-02-27
Authors: Shin, Y., Greene, E.C.
PDB entry 9njl: MARV GP in complex with MARV16 Fab
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Orthomarburgvirus marburgense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-02-27
Authors: Addetia, A., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9njn: YK-029a in complex with WT EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2025-02-27
Authors: Damghani, T., Heppner, D.E.
PDB entry 9njo: Y100F Mutant of E. coli Dihydrofolate Reductase
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-27
Authors: Fried, S.D.E., Mathews, I.I., Boxer, S.G.
PDB entry 9njr: The Cryo-EM structure of the yeast Dmc1-ssDNA nucleoprotein filament ADP bound state
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-02-27
Authors: Shin, Y., Greene, E.C.
PDB entry 9njt: Structure of native octahedral assembly of D. discoideum Odo2
Classification: TRANSFERASE
Source organism: Dictyostelium discoideum AX2
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.72 Å
Deposited: 2025-02-27
Authors: Hoogerbrugge, G., Keatinge-Clay, A.T., Marcotte, E.M.
PDB entry 9nju: Structure of native homodimer of D. discoideum polyketide synthase Pks16
Classification: TRANSFERASE
Source organism: Dictyostelium discoideum AX2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2025-02-27
Authors: Hoogerbrugge, G., Keatinge-Clay, A.T., Marcotte, E.M.
PDB entry 9njv: E. coli 70S initiation complex (bL33 absent)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-28
Authors: Singh, S., Hunt, J.F.
PDB entry 9njw: Structure of ancestral-reconstructed cytochrome P450 11A1 (CYP11A1) in complex with cholesterol
Classification: OXIDOREDUCTASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-28
Authors: Chagas, B.C., Wang, P.C., Brixius-Anderko, S.
PDB entry 9njx: [0,7,12-->14] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,7,12) base pairs and 2 nt sticky ends containing a semi-junction that becomes left-handed
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.58 Å
Deposited: 2025-02-28
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9njy: Terminal two domains of ClfA002 with bound Fab of AZD7745
Classification: IMMUNE SYSTEM
Source organism: Mammalia; Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-02-28
Authors: Oganesyan, V.Y.
PDB entry 9njz: [0,8,12-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,8,12) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.18 Å
Deposited: 2025-02-28
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nk0: Prenylated-FMN maturase PhdC from Mycolicibacterium fortuitum (apo)
Classification: FLAVOPROTEIN
Source organism: Mycolicibacterium fortuitum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2025-02-28
Authors: Kilde, I.R., Koutmos, M.
PDB entry 9nk1: Prenylated-FMN maturase PhdC from Mycolicibacterium fortuitum bound to flavin mononucleotide
Classification: FLAVOPROTEIN
Source organism: Mycolicibacterium fortuitum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2025-02-28
Authors: Kilde, I.R., Koutmos, M.
PDB entry 9nk2: Prenylated-FMN maturase PhdC from Mycolicibacterium fortuitum bound to prenylated flavin mononucleotide
Classification: FLAVOPROTEIN
Source organism: Mycolicibacterium fortuitum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-02-28
Authors: Kilde, I.R., Koutmos, M.
PDB entry 9nk3: Prenylated-FMN maturase PhdC E45A mutant from Mycolicibacterium fortuitum (apo)
Classification: FLAVOPROTEIN
Source organism: Mycolicibacterium fortuitum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-02-28
Authors: Kilde, I.R., Koutmos, M.
PDB entry 9nk4: Prenylated-FMN maturase PhdC E45A mutant from Mycolicibacterium fortuitum bound to flavin mononucleotide
Classification: FLAVOPROTEIN
Source organism: Mycolicibacterium fortuitum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2025-02-28
Authors: Kilde, I.R., Koutmos, M.
PDB entry 9nk5: [0,7,12-->14] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,7,12) base pairs and 2 nt sticky ends containing a semi-junction that becomes left-handed
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.58 Å
Deposited: 2025-02-28
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nk6: Thermothelomyces thermophilus SAM complex closed conformation
Classification: MEMBRANE PROTEIN
Source organism: Thermothelomyces thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-02-28
Authors: Diederichs, K., Botos, I., Buchanan, S.K.
PDB entry 9nk7: Thermothelomyces thermophilus SAM complex open conformation
Classification: MEMBRANE PROTEIN
Source organism: Thermothelomyces thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-02-28
Authors: Diederichs, K., Botos, I., Buchanan, S.K.
PDB entry 9nk8: Thermothelomyces thermophilus SAM complex bound to darobactin A
Classification: MEMBRANE PROTEIN/ANTIBIOTIC
Source organism: Photorhabdus khanii; Thermothelomyces thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-28
Authors: Diederichs, K., Botos, I., Buchanan, S.K.
PDB entry 9nk9: Nano-body peptide complex
Classification: IMMUNE SYSTEM
Source organism: Lama glama; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-28
Authors: Zhao, G., Cheloha, R.W., Bewley, C.A.
PDB entry 9nka: [-1,8,12-->14] Shifted tensegrity triangle with an (arm,center,arm) distribution of (-1,8,12) base pairs and 2 nt sticky ends containing a semi-junction that becomes left-handed
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.88 Å
Deposited: 2025-02-28
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nkb: Structure of Candida albicans trehalose-6-phosphate synthase in complex with SJ6675
Classification: TRANSFERASE
Source organism: Candida albicans SC5314
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-02-28
Authors: Schaefer, M., Washington, E.J., Brennan, R.G.
PDB entry 9nkc: Dpo4 DNA polymerase (Wild Type) in complex with DNA containing an 8oxoG template lesion
Classification: TRANSFERASE/DNA
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-02-28
Authors: Pata, J.D., Liang, B.
PDB entry 9nkd: Dpo4 DNA polymerase (R332A) in complex with DNA containing an 8oxoG template lesion
Classification: TRANSFERASE/DNA
Source organism: Saccharolobus solfataricus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-02-28
Authors: Pata, J.D., Liang, B.
PDB entry 9nke: Dpo4 DNA polymerase (R336A) in complex with DNA containing an 8oxoG template lesion
Classification: TRANSFERASE/DNA
Source organism: Saccharolobus solfataricus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-02-28
Authors: Pata, J.D., Liang, B.
PDB entry 9nkf: Structure of human substrate-free 26S proteasome in the presence of ATPgS and MG-132,SA-like state (composite map)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-28
Authors: Peddada, N., Beutler, B.
PDB entry 9nkg: Structure of substrate engaged MIDN-bound human 26S proteasome, EB-MIDN (Composite map)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-28
Authors: Peddada, N., Beutler, B.
PDB entry 9nkh: Conformational flexibility in HLA-B8: peptide tuning structural and dynamical changes
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-02-28
Authors: Li, L., Bouvier, M.
PDB entry 9nki: Structure of substrate engaged MIDN-bound human 26S proteasome, EB MIDN_UBL state (Composite map)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-02-28
Authors: Peddada, N., Beutler, B.
PDB entry 9nkj: Structure of substrates-engaged MIDN-bound human 26S proteasome,ED-MIDN state (Composite map)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2025-02-28
Authors: Peddada, N., Beutler, B.
PDB entry 9nkk: Horse liver alcohol dehydrogenase T178A in complex with NADH and N-cylcohexyl formamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-02-28
Authors: Mukherjee, S., Boxer, S.G.
PDB entry 9nkl: E. coli 70S initiation complex
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-01
Authors: Singh, S., Hunt, J.F.
PDB entry 9nkm: Coevolved affibody pair A4B1
Classification: PROTEIN BINDING
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-01
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 9nkn: Coevolved affibody pair A2B2
Classification: PROTEIN BINDING
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-03-01
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 9nko: Coevolved affibody pair A3B3
Classification: PROTEIN BINDING
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2025-03-01
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 9nkp: Coevolved affibody pair A5B5
Classification: PROTEIN BINDING
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-03-01
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 9nkq: Coevolved affibody pair A6B6
Classification: PROTEIN BINDING
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-03-01
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 9nkr: Coevolved affibody pair A7B7
Classification: PROTEIN BINDING
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-03-01
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 9nks: Coevolved affibody pair A7B3
Classification: PROTEIN BINDING
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-01
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 9nkt: [0,8,12P-->13] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,8,12) base pairs, 1 nt sticky ends, and 5' phosphates containing a semi-junction that becomes left-handed
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.42 Å
Deposited: 2025-03-01
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nky: Crystal structure of unliganded Fab MAM01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-03-02
Authors: Jain, M., Wilson, I.A.
PDB entry 9nkz: Crystal structure of Fab MAM01 in complex with NANP6 peptide from circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-03-02
Authors: Jain, M., Wilson, I.A.
PDB entry 9nl0: Crystal structure of Fab MAM01 in complex with NPNA3 peptide from circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-03-02
Authors: Jain, M., Wilson, I.A.
PDB entry 9nl1: Crystal structure of Fab MAM01 in complex with junctional region peptide from circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2025-03-02
Authors: Jain, M., Wilson, I.A.
PDB entry 9nl2: Structure of R2 retrotransposon protein from Platysternon megacephalum initiating target-primed reverse transcription
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Platysternon megacephalum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-02
Authors: Thawani, A., Collins, K., Nogales, E.
PDB entry 9nl3: Structure of R2 retrotransposon protein from Taeniopygia guttata initiating target-primed reverse transcription
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Taeniopygia guttata; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-02
Authors: Thawani, A., Collins, K., Nogales, E.
PDB entry 9nl4: Structure of R2 retrotransposon protein from Platysternon megacephalum after second strand nicking
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Platysternon megacephalum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2025-03-02
Authors: Thawani, A., Collins, K., Nogales, E.
PDB entry 9nl5: E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-02
Authors: Singh, S., Hunt, J.F.
PDB entry 9nl6: E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-02
Authors: Singh, S., Hunt, J.F.
PDB entry 9nl7: E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-02
Authors: Singh, S., Hunt, J.F.
PDB entry 9nl8: [3,7,10-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (3,7,10) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.77 Å
Deposited: 2025-03-02
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nlb: E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-03
Authors: Singh, S., Hunt, J.F.
PDB entry 9nld: O-acetylserine sulfhydrylase A (CysK) from Neisseria gonorrhoeae
Classification: BIOSYNTHETIC PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-03
Authors: McGarvie, J., Warrender, A.K., Hicks, J.L., Oldham, K.E.A., Prentice, E.A., Jiao, W.
PDB entry 9nle: E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-03
Authors: Singh, S., Hunt, J.F.
PDB entry 9nlf: E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-03
Authors: Singh, S., Hunt, J.F.
PDB entry 9nlg: CBASS Pseudomonas syringae Cap5 tetramer with 3'2'-c-GAMP cyclic dinucleotide ligand (His56Ala mutant without Mg2+ ions)
Classification: IMMUNE SYSTEM
Source organism: Pseudomonas syringae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2025-03-03
Authors: Rechkoblit, O., Aggarwal, A.K.
PDB entry 9nlh: E.coli Initiation complex with YheS-EQ2
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-03
Authors: Singh, S., Hunt, J.F.
PDB entry 9nli: GloR, native, unmodified
Classification: CYTOSOLIC PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-03-03
Authors: Cuthbert, B.J., de Miranda, R., Martinez, J., Goulding, C.W.
PDB entry 9nlj: E.coli Initiation complex with Uup-EQ2
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-03
Authors: Singh, S., Hunt, J.F.
PDB entry 9nlk: [0,7,13,P-->14] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,7,13) base pairs, 1 nt sticky ends, and 5' phosphates containing a semi-junction that becomes left-handed
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.42 Å
Deposited: 2025-03-03
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nll: [0,7,13-->14] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,7,13) base pairs and 1 nt sticky ends containing a semi-junction that becomes left-handed
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.73 Å
Deposited: 2025-03-03
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nlm: GloR with selenomethionine labels
Classification: CYTOSOLIC PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-03
Authors: Cuthbert, B.J., de Miranda, R., Martinez, J., Goulding, C.W.
PDB entry 9nln: Crystal Structure of Coxakievirus B3 IRES Domain V in Complex with a Fab
Classification: RNA/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-03-03
Authors: Das, N.K., Banna, H.A., Koirala, D.
PDB entry 9nlo: Escherichia coli Signal Peptidase I Delta 2-76 P84A in complex with lipopeptide inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2025-03-03
Authors: Paetzel, M., Luo, C.
PDB entry 9nlp: HIV-1 Reverse Transcriptase with New Non-Nucleoside Reverse Transcriptase Inhibitor 12126065
Classification: VIRAL PROTEIN
Source organism: HIV-1 06TG.HT008
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2025-03-03
Authors: Young, M.A., Lane, T.R., Raman, R., Nelson, J.A.E., Riabova, O., Kazakova, E., Monakhova, N., Tsedilin, A., Rees, S.D., Quinnell, D., Chang, G., Ekins, S.
PDB entry 9nlq: E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-03
Authors: Singh, S., Hunt, J.F.
PDB entry 9nlr: Crystal structure of human glutamine synthetase in complex with ADP and phosphate
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-03-03
Authors: Lovell, S., Battaile, K.P., Jeitner, T.M.
PDB entry 9nls: E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-03
Authors: Singh, S., Hunt, J.F.
PDB entry 9nlt: Crystal Structure of Flpp3-minibinder687 Complex
Classification: APOPTOSIS
Source organism: Francisella tularensis; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-03-03
Authors: Bera, A.K., Gokce, G., Kang, A., Bhardwaj, G.
PDB entry 9nlu: Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 5
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.29 Å
Deposited: 2025-03-03
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nlv: Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli; Salmonella enterica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-03-03
Authors: Burman, N., Pandey, S., Wiedenheft, B., Sternberg, S.H.
PDB entry 9nlw: Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 6
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2025-03-03
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nlx: Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Classification: IMMUNE SYSTEM
Source organism: Salmonella enterica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-03
Authors: Burman, N., Pandey, S., Wiedenheft, B., Sternberg, S.H.
PDB entry 9nly: Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 7
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2025-03-03
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nlz: Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 8
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2025-03-03
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nm0: AZ5104 (metabolite of AZD9291) in complex with WT EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-03-03
Authors: Damghani, T., Heppner, D.E.
PDB entry 9nm1: Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - All Merge (Class 9, focused on D1/D2)
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-03
Authors: Khan, Y.A., Brunger, A.T.
PDB entry 9nm2: Dimeric Structure of full-length CrgA, a Cell Division Protein from Mycobacterium tuberculosis, in Lipid Bilayers
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: SOLID-STATE NMR
Deposited: 2025-03-03
Authors: Shin, Y., Prasad, R., Das, N., Taylor, J.A., Qin, H., Hu, W., Hu, Y.-Y., Fu, R., Zhang, R., Zhou, H.-X., Cross, T.A.
PDB entry 9nm3: Crystal structure of FBF-1 RBD+CT complexed with compact FBE RNA
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-03-04
Authors: Qiu, C., Hall, T.M.T.
PDB entry 9nm5: Crystal structure of human glutamine synthetase in complex with ADP and phosphinothricin phosphate
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-03-04
Authors: Lovell, S., Battaile, K.P., Jeitner, T.M.
PDB entry 9nm6: [3,8,9-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (3,8,9) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.58 Å
Deposited: 2025-03-04
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nm7: [2T7-SiO2] Rhombohedral tensegrity triangle lattice coated in silica
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.76 Å
Deposited: 2025-03-04
Authors: Vecchioni, S., Al-Zarah, H.A., Sha, R., Ohayon, Y.P., Woloszyn, K., Perren, L.
PDB entry 9nm8: [2T7-SiO2-dry] Rhombohedral tensegrity triangle lattice coated in silica tapped dry and flash frozen without cryoprotectant
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.18 Å
Deposited: 2025-03-04
Authors: Vecchioni, S., Al-Zarah, H.A., Sha, R., Ohayon, Y.P., Woloszyn, K., Perren, L.
PDB entry 9nm9: [2T8-SiO2] Hexagonal tensegrity triangle lattice coated in silica
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.56 Å
Deposited: 2025-03-04
Authors: Vecchioni, S., Al-Zarah, H.A., Sha, R., Ohayon, Y.P., Woloszyn, K., Perren, L.
PDB entry 9nmc: SARS-CoV-2 3CLPro in complex with 3-(6-bromo-2-hydroxy-3-(isoquinolin-4-yl)-4-oxoquinolin-1(4H)-yl)propanenitrile
Classification: VIRAL PROTEIN,TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-03-04
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9nmd: SARS-CoV-2 3CLPro in complex with 3-(6-bromo-2-hydroxy-3-(isoquinolin-4-yl)-4-oxoquinolin-1(4H)-yl)propanenitrile
Classification: VIRAL PROTEIN,TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-03-04
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9nme: SARS-CoV-2 3CLPro in complex with 2-[2-hydroxy-3-(4-isoquinolyl)-4-oxo-6-(trifluoromethyl)-1H-quinolin-8-yl]benzonitrile
Classification: VIRAL PROTEIN,TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-04
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9nmf: SARS-CoV-2 3CLPro in complex with 8-(6-amino-3-pyridyl)-2-hydroxy-3-(4-isoquinolyl)-6-(trifluoromethyl)-1H-quinolin-4-one
Classification: VIRAL PROTEIN,TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-04
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9nmg: SARS-CoV-2 3CLPro in complex with 8-(2,5-dihydro-1H-pyrrol-3-yl)-2-hydroxy-3-(4-isoquinolyl)-6-(trifluoromethyl)-1H-quinolin-4-one
Classification: VIRAL PROTEIN,TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-04
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9nmh: SARS-CoV-2 3CLPro in complex with 2-hydroxy-3-(4-isoquinolyl)-8-(1,2,3,6-tetrahydropyridin-4-yl)-6-(trifluoromethyl)-1H-quinolin-4-one
Classification: VIRAL PROTEIN,HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-04
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9nmm: [4,7,9-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,7,9) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.86 Å
Deposited: 2025-03-04
Authors: Abi Rizk, J., Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nmn: Structure of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-03-04
Authors: Weninger, G., Marks, A.R.
PDB entry 9nmo: Structure of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-03-04
Authors: Weninger, G., Marks, A.R.
PDB entry 9nmp: Structure of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-03-04
Authors: Weninger, G., Marks, A.R.
PDB entry 9nmq: Structure of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-03-04
Authors: Weninger, G., Marks, A.R.
PDB entry 9nmr: Structure of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-03-04
Authors: Weninger, G., Marks, A.R.
PDB entry 9nms: R162Q mutant of inwardly rectifying potassium channel Kir7.1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-03-04
Authors: Peisley, A., Cone, R.
PDB entry 9nmt: ML418 bound inwardly rectifying potassium channel Kir7.1 R162Q mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-03-04
Authors: Peisley, A., Su, M., Cone, R.
PDB entry 9nmu: TCR156 bound to HLA A*02:01-PAP
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-04
Authors: Jude, K.M., Chen, X., Garcia, K.C.
PDB entry 9nmv: TCR156 S32Halpha bound to HLA A*02:01-PAP
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-03-04
Authors: Jude, K.M., Chen, X., Garcia, K.C.
PDB entry 9nmw: TCR156 S30Ealpha S32Qalpha bound to HLA A*02:01-PAP
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-03-04
Authors: Jude, K.M., Chen, X., Garcia, K.C.
PDB entry 9nmx: TCR156 S32Malpha variant bound to HLA A*02:01-PAP
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2025-03-04
Authors: Jude, K.M., Chen, X., Garcia, K.C.
PDB entry 9nmy: TCR156 S32Qalpha bound to HLA A*02:01-PAP
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-03-04
Authors: Jude, K.M., Xiang, X., Chen, X., Garcia, K.C.
PDB entry 9nn1: Yeast V1-ATPase bound to Rtc5p
Classification: PROTON TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-03-04
Authors: Khan, M.M., Wilkens, S.
PDB entry 9nn2: Composite structure of HSV-1 helicase-primase in complex with a forked DNA and amenamevir
Classification: Transferase/Hydrolase
Source organism: Human alphaherpesvirus 1 strain 17; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-04
Authors: He, Q., Baranovskiy, A.G., Morstadt, L.M., Babayeva, N.D., Lim, C., Tahirov, T.H.
PDB entry 9nn3: BET BRD2-BD1 in complex with peptide 6.2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-05
Authors: Jing, X., Deshpande, C., Patel, K., Mackay, J.P.
PDB entry 9nn4: BET BRD3-BD1 in complex with peptide 7.2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-03-05
Authors: Jing, X., Mackay, J.P.
PDB entry 9nn5: BET BRD4-BD1 in complex with peptide 9.2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-03-05
Authors: Jing, X., Mackay, J.P.
PDB entry 9nn6: E. coli Cir in Complex with the RBD of Microcin V
Classification: MEMBRANE PROTEIN
Source organism: Enterobacteriaceae; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-05
Authors: Maurakis, S.A., Botos, I., Buchanan, S.K.
PDB entry 9nn9: ISG15 complexed with nanobody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-03-05
Authors: Dabhade, P., Schwartz, T.U.
PDB entry 9nna: Crystal structure of CYP46A1 with [(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl][(4R,8M)-8-(1,3-oxazol-5-yl)-6-(trifluoromethyl)imidazo[1,2-a]pyridin-3-yl]methanone (compound 3k)
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-03-05
Authors: Yano, J., Skene, R.J.
PDB entry 9nnb: Cryo-EM structure of the Retron Ec78 complex, PtuA:PtuB:RT (4:2:1)
Classification: DNA-RNA HYBRID
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-03-05
Authors: Wang, B., Li, H.
PDB entry 9nnc: Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in oxlate bound state
Classification: MEMBRANE PROTEIN
Source organism: Serendipita indica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-03-05
Authors: Khandelwal, N.K., Kumar, P., Gupta, M., Finer-Moore, J., Stroud, R.M.
PDB entry 9nnd: Structure of the HERV-K (HML-2) spike complex
Classification: VIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Deposited: 2025-03-05
Authors: Shaked, R., Katz, M., Diskin, R.
PDB entry 9nne: Crystal structure of CYP46A1 with (morpholin-4-yl)[(4R,8M)-8-(1,3-oxazol-5-yl)-6-(trifluoromethyl)imidazo[1,2-a]pyridin-3-yl]methanone (compound 2h)
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-03-05
Authors: Yano, J., Skene, R.J.
PDB entry 9nnf: Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-03-05
Authors: Gharpure, A., Fernandez-Quintero, M.L., Ward, A.B.
PDB entry 9nng: X-ray structure of SARS-CoV-2 main protease V186I covalently bound to inhibitor GRL-051-22 at 1.90 A
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-03-05
Authors: Beechboard, S.N., Ghosh, A.K., Mesecar, A.D., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9nnh: Cryo-EM structure of the Retron Ec78 complex, PtuA:PtuB:RT (4:2:2)
Classification: DNA-RNA HYBRID
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-03-05
Authors: Wang, B., Li, H.
PDB entry 9nni: Crystal structure of CYP46A1 with cyclopropyl[(4M)-4-(1,3-oxazol-5-yl)-6-(trifluoromethyl)-1H-indol-1-yl]methanone (compound 2b)
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-05
Authors: Yano, J., Skene, R.J.
PDB entry 9nnj: Crystal structure of CYP46A1 with 3-chloro-N-[(3M)-3-(1,3-oxazol-5-yl)phenyl]-N-(propan-2-yl)benzene-1-sulfonamide (compound 2)
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2025-03-05
Authors: Yano, J., Skene, R.J.
PDB entry 9nnk: Cryo-EM structure of Retron-displaced free PtuAB complex, PtuA:PtuB (4:2)
Classification: TOXIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-03-05
Authors: Wang, B., Li, H.
PDB entry 9nnl: Bordetella filamentous hemagglutinin (FhaB) C-terminal domain bound to microtubules
Classification: TOXIN
Source organism: Bordetella bronchiseptica RB50; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2025-03-05
Authors: Neumann, B., Gonen, S.
PDB entry 9nnm: Crystal structure of CYP46A1 with 3-chloro-N-[(3M)-3-(1,3-oxazol-5-yl)-5-(trifluoromethyl)phenyl]benzamide (compound 3f)
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-05
Authors: Yano, J., Skene, R.J.
PDB entry 9nnn: Cryo-EM structure of amyloid fibril extracted from the heart of a variant ATTR D38A amyloidosis patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-05
Authors: Nguyen, B., Afrin, S., Saelices, L.
PDB entry 9nno: Crystal structure of CYP46A1 with N-[6-(1,3-oxazol-5-yl)-4-(trifluoromethyl)pyridin-2-yl]cyclopropanecarboxamide (compound 4l)
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-05
Authors: Yano, J., Skene, R.J.
PDB entry 9nnp: Composite structure of HSV-1 helicase-primase in complex with a forked DNA
Classification: Transferase/Hydrolase/DNA
Source organism: Human alphaherpesvirus 1 strain 17; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-05
Authors: He, Q., Baranovskiy, A.G., Morstadt, L.M., Babayeva, N.D., Lim, C., Tahirov, T.H.
PDB entry 9nnq: GNAT family acetyltransferase EryM
Classification: TRANSFERASE
Source organism: Saccharopolyspora erythraea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-06
Authors: Li, Y., Smith, J.
PDB entry 9nnr: GNAT family acetyltransferase EryM in complex with Acetyl-CoA
Classification: TRANSFERASE
Source organism: Saccharopolyspora erythraea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-03-06
Authors: Li, Y., Smith, J.
PDB entry 9nns: Flavin-dependent N5-ornithine monooxygenase EtcB
Classification: FLAVOPROTEIN
Source organism: Saccharopolyspora erythraea
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-03-06
Authors: Li, Y., Liu, X., Smith, J.
PDB entry 9nnt: BET BRD4-BD1 in complex with peptide 6.1
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-03-06
Authors: Jing, X.
PDB entry 9nnu: Crystal Structure of Ebola Envelope glycoprotein GP in complex with compound LD4-189ZbR
Classification: VIRAL PROTEIN
Source organism: Ebola virus - Mayinga, Zaire, 1976
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-03-06
Authors: Agrawal, S., Wilson, I.A.