LiteFold/PDB huggingface dataset:
PDB entry 8h5u: Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-021
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2022-10-13
Authors: Yang, J., Lin, S., Lu, G.W.
PDB entry 8h5v: Crystal structure of the FleQ domain of Vibrio cholerae FlrA
Classification: TRANSCRIPTION
Source organism: Vibrio cholerae O395
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-10-14
Authors: Dasgupta, J., Chakraborty, S.
PDB entry 8h5y: Crystal structure of RadD- ADP complex
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7001 Å
Deposited: 2022-10-14
Authors: Yan, X.X., Tian, L.F.
PDB entry 8h5z: Crystal structure of RadD/ATP analogue complex
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 3.00003 Å
Deposited: 2022-10-14
Authors: Yan, X.X., Tian, L.F.
PDB entry 8h61: Ketoreductase CpKR mutant - M2
Classification: OXIDOREDUCTASE
Source organism: Candida parapsilosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-10-14
Authors: Chen, C., Pan, J., Xu, J.H.
PDB entry 8h62: Crystal structure of Internalin A from Listeria monocytogenes with human E-cadherin EC12
Classification: CELL INVASION
Source organism: Homo sapiens; Listeria monocytogenes serovar 1/2a
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-10-14
Authors: Caaveiro, J.M.M., Nagatoish, S., Tsumoto, K.
PDB entry 8h63: Crystal structure of Internalin A from Listeria monocytogenes with nanobody VHH10 bound
Classification: CELL INVASION/IMMUNE SYSTEM
Source organism: Lama glama; Listeria monocytogenes serovar 1/2a
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2022-10-15
Authors: Caaveiro, J.M.M., Nagatoish, S., Tsumoto, K.
PDB entry 8h64: Crystal structure of Internalin A from Listeria monocytogenes with nanobody VHH24 bound
Classification: CELL INVASION/IMMUNE SYSTEM
Source organism: Lama glama; Listeria monocytogenes serovar 1/2a
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-10-15
Authors: Caaveiro, J.M.M., Nagatoish, S., Tsumoto, K.
PDB entry 8h65: Crystal structure of human GCN5 histone acetyltransferase domain bound with butyryl-CoA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-10-15
Authors: Li, N., Tao, Y.J., Guo, Y.R.
PDB entry 8h66: Crystal structure of human GCN5 histone acetyltransferase domain bound with propionyl-CoA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-10-15
Authors: Li, N., Tao, Y.J., Guo, Y.R.
PDB entry 8h67: type I-B Cascade bound to a PAM-containing dsDNA target at 3.8 angstrom resolution.
Classification: RNA BINDING PROTEIN
Source organism: Synechocystis sp. PCC 6714; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-10-15
Authors: Xiao, Y., Lu, M., Yu, C., Zhang, Y.
PDB entry 8h68: Crystal structure of Caenorhabditis elegans NMAD-1 in complex with NOG and Mg(II)
Classification: METAL BINDING PROTEIN
Source organism: Caenorhabditis elegans; Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-16
Authors: Shi, Y., Ding, J., Yang, H.
PDB entry 8h69: Cryo-EM structure of influenza RNA polymerase
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/goose/Guangdong/1/1996(H5N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-10-16
Authors: Li, H., Wu, Y., Liang, H., Liu, Y.
PDB entry 8h6a: Crystal structure of AtHPPD complexed with YH21477
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2022-10-16
Authors: Yang, G.-F.
PDB entry 8h6b: Crystal structure of AtHPPD complexed with YH20702
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.897 Å
Deposited: 2022-10-16
Authors: Yang, G.-F.
PDB entry 8h6c: Crystal structure of human GCN5 histone acetyltransferase domain bound with malonyl-CoA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-10-16
Authors: Li, N., Tao, Y.J., Guo, Y.R.
PDB entry 8h6d: Crystal structure of human GCN5 histone acetyltransferase domain bound with glutaryl-CoA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.26 Å
Deposited: 2022-10-16
Authors: Li, N., Tao, Y.J., Guo, Y.R.
PDB entry 8h6e: Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-17
Authors: Zhang, W., Zhan, X., Zhang, X., Bai, R., Lei, J., Yan, C., Shi, Y.
PDB entry 8h6f: Cryo-EM structure of SARS-CoV-2 Spike protein in complex with A6 repebody
Classification: VIRAL PROTEIN
Source organism: Cyclostomatida; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-10-17
Authors: Kim, U.J., Yoo, Y., Cho, H.S.
PDB entry 8h6h: cryo-EM structure of cellodextrin phosphorylase from Clostridium thermocellum
Classification: CARBOHYDRATE
Source organism: Acetivibrio thermocellus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2022-10-17
Authors: Kuga, T., Sunagawa, N., Igarashi, K.
PDB entry 8h6i: The crystal structure of SARS-CoV-2 3C-like protease Double Mutant (L50F and E166V) in complex with a traditional Chinese Medicine Inhibitors
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-10-17
Authors: Lin, M., Liu, X.
PDB entry 8h6j: Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-10-18
Authors: Zhang, W., Zhan, X., Zhang, X., Lei, J., Yan, C., Shi, Y.
PDB entry 8h6k: Cryo-EM structure of human exon-defined spliceosome in the mature B state.
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-10-18
Authors: Zhang, W., Zhan, X., Zhang, X., Bai, R., Lei, J., Yan, C., Shi, Y.
PDB entry 8h6l: Cryo-EM structure of human exon-defined spliceosome in the early B state.
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-10-18
Authors: Zhang, W., Zhan, X., Zhang, X., Bai, R., Lei, J., Yan, C., Shi, Y.
PDB entry 8h6n: Crystal structure of SARS-CoV-2 main protease (Mpro) Mutant (T21I) in complex with protease inhibitor Nirmatrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-10-18
Authors: Lin, M., Liu, X.
PDB entry 8h6p: Complex structure of CDK2/Cyclin E1 and a potent, selective macrocyclic inhibitor
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2022-10-18
Authors: Ren, X.
PDB entry 8h6q: Class I sesquiterpene synthase BCBOT2 (apo)
Classification: STRUCTURAL PROTEIN
Source organism: Botrytis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-10-18
Authors: Lou, T.T., Ma, M.
PDB entry 8h6r: LW Domain of Arabidopsis thaliana TFIIS
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-10-18
Authors: Wang, Y.
PDB entry 8h6s: Structure of acyltransferase VinK in complex with the loading acyl carrier protein of vicenistatin PKS
Classification: TRANSFERASE
Source organism: Streptomyces halstedii
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-10-18
Authors: Kawada, K., Miyanaga, A., Chisuga, T., Kudo, F., Eguchi, T.
PDB entry 8h6t: Complex structure of CDK2/Cyclin E1 and a potent, selective small molecule inhibitor
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-10-18
Authors: Ren, X.
PDB entry 8h6u: Class I sesquiterpene synthase BCBOT2 (complex)
Classification: STRUCTURAL PROTEIN
Source organism: Botrytis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2022-10-18
Authors: Lou, T.T., Ma, M.
PDB entry 8h70: Crystal structure of the catalytic ATP-binding domain of the PhoR sensor histidine kinase from Vibrio cholera
Classification: MEMBRANE PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-10-18
Authors: Jia, R., Zhao, W., Hattori, M.
PDB entry 8h72: Class I sesquiterpene synthase DbPROS (complex)
Classification: STRUCTURAL PROTEIN
Source organism: Dendrothele bispora (strain CBS 962.96)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-10-18
Authors: Lou, T.T., Ma, M.
PDB entry 8h73: Crystal structure of antibody scFv against M2e Influenza peptide
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-10-18
Authors: Kumar, U., Madni, Z.K., Gaur, V., Salunke, D.M.
PDB entry 8h75: FGFR2 in complex with YJ001
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.75 Å
Deposited: 2022-10-19
Authors: Yan, X.E., Yun, C.H.
PDB entry 8h77: Hsp90-AhR-p23-XAP2 complex
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-19
Authors: Wen, Z.L., Zhai, Y.J., Zhu, Y., Sun, F.
PDB entry 8h78: Crystal structure of human MMP-2 catalytic domain in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-10-19
Authors: Kamitani, M., Takeuchi, T., Mima, M.
PDB entry 8h79: The crystal structure of cyanorhodopsin-II (CyR-II) P7104R from Nodosilinea nodulosa PCC 7104
Classification: MEMBRANE PROTEIN
Source organism: Nodosilinea nodulosa PCC 7104
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2022-10-19
Authors: Hosaka, T., Kimura-Someya, T., Shirouzu, M.
PDB entry 8h7a: Crystal structure of the dimer form KAT6A WH domain with its bound double stranded DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-10-19
Authors: Wang, Z., Cao, Y.
PDB entry 8h7b: The crystal structure of human mcl1 kinase domain in complex with MCL1-M-EBA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46408 Å
Deposited: 2022-10-19
Authors: Zhu, C.J., Zhang, Z.M.
PDB entry 8h7c: Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T) - Pt derivative
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-10-19
Authors: Kurihara, K., Umezawa, K., Donnelly, A.E., Hecht, M.H., Arai, R.
PDB entry 8h7d: Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T)
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-19
Authors: Kurihara, K., Umezawa, K., Donnelly, A.E., Hecht, M.H., Arai, R.
PDB entry 8h7e: Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T) at 2.0 angstrom resolution
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-10-19
Authors: Kurihara, K., Umezawa, K., Donnelly, A.E., Hecht, M.H., Arai, R.
PDB entry 8h7f: The crystal structure of human abl1 kinase domain in complex with abl1-B-EBA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45013 Å
Deposited: 2022-10-20
Authors: Zhu, C.J., Zhang, Z.M.
PDB entry 8h7g: Cryo-EM structure of the human SAGA complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-10-20
Authors: Huang, J., Zhang, Y.
PDB entry 8h7h: The crystal structure of human abl1 kinase domain in complex with abl1-A-EBA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2779 Å
Deposited: 2022-10-20
Authors: Zhu, C.J., Zhang, Z.M.
PDB entry 8h7i: Structure of nanobody 11A in complex with quinalphos
Classification: IMMUNE SYSTEM
Source organism: Camelus bactrianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-10-20
Authors: Wang, H., Li, J.D., Shen, X., Xu, Z.L., Sun, Y.M.
PDB entry 8h7j: The crystal structure of CD163 SRCR5-9
Classification: ENDOCYTOSIS
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-10-20
Authors: Luo, Z.P., Li, R., Ma, H.F.
PDB entry 8h7k: SARS-CoV-2 Mpro Double Mutant (H41A and T21I) in complex with nsp4/5 peptidyl substrate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-10-20
Authors: Lin, M., Liu, X.
PDB entry 8h7l: Cryo-EM Structure of SARS-CoV-2 BA.2 Spike protein in complex with BA7535
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2022-10-20
Authors: Liu, Z., Yan, A., Gao, Y.
PDB entry 8h7m: Structure of nanobody 11A in complex with parathion
Classification: IMMUNE SYSTEM
Source organism: Camelus bactrianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2022-10-20
Authors: Wang, H., Li, J.D., Shen, X., Xu, Z.L., Sun, Y.M.
PDB entry 8h7n: Structure of nanobody 11A in complex with triazophos
Classification: IMMUNE SYSTEM
Source organism: Camelus bactrianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-10-20
Authors: Wang, H., Li, J.D., Shen, X., Xu, Z.L., Sun, Y.M.
PDB entry 8h7o: Crystal structure of aqualigase
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-10-20
Authors: Li, H., Ma, M.Z., Zhang, L.J., Dai, L., Chen, C.-C., Guo, R.-T.
PDB entry 8h7p: Crystal structure of aqualigase bound with Suc-AAPF
Classification: HYDROLASE
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-10-20
Authors: Li, H., Ma, M.Z., Zhang, L.J., Dai, L., Chen, C.-C., Guo, R.-T.
PDB entry 8h7q: Cryo-EM structure of Synechocystis sp. PCC6714 Cascade at 3.8 angstrom resolution
Classification: RNA BINDING PROTEIN
Source organism: Synechocystis sp. PCC 6714; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-10-20
Authors: Xiao, Y., Lu, M., Yu, C., Zhang, Y.
PDB entry 8h7r: Structure of nanobody 11A in complex with coumaphos
Classification: IMMUNE SYSTEM
Source organism: Camelus bactrianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-10-20
Authors: Wang, H., Li, J.D., Shen, X., Xu, Z.L., Sun, Y.M.
PDB entry 8h7t: Trans-3/4-proline-hydroxylase H11 apo structure
Classification: STRUCTURAL PROTEIN
Source organism: uncultured bacterium esnapd13
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-10-21
Authors: Gong, W.M., Hu, X.Y.
PDB entry 8h7v: Trans-3/4-proline-hydroxylase H11 with AKG
Classification: STRUCTURAL PROTEIN
Source organism: uncultured bacterium esnapd13
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-10-21
Authors: Gong, W.M., Hu, X.Y.
PDB entry 8h7w: Crystal structure of SARS-CoV-2 main protease (Mpro) Mutant (S144A) in complex with protease inhibitor Nirmatrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-10-21
Authors: Lin, M., Liu, X.
PDB entry 8h7x: Crystal structure of EGFR T790M/C797S mutant in complex with brigatinib
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.404 Å
Deposited: 2022-10-21
Authors: Kukimoto-Niino, M., Shirouzu, M.
PDB entry 8h7y: Trans-3/4-proline-hydroxylase H11 with AKG and L-proline
Classification: STRUCTURAL PROTEIN
Source organism: uncultured bacterium esnapd13
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2022-10-21
Authors: Gong, W.M., Hu, X.Y.
PDB entry 8h7z: Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2022-10-21
Authors: Liu, Z., Yan, A., Gao, Y.
PDB entry 8h81: Trans-3/4-proline-hydroxylase H11 with 4-Hydroxyl-proline
Classification: STRUCTURAL PROTEIN
Source organism: uncultured bacterium esnapd13
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-10-21
Authors: Gong, W.M., Hu, X.Y.
PDB entry 8h82: Crystal structure of SARS-CoV-2 main protease (Mpro) Mutant (E166V) in complex with protease inhibitor Nirmatrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-10-21
Authors: Lin, M., Liu, X.
PDB entry 8h83: Crystal structure of a IsPETase variant V22 from Ideonella sakaiensis
Classification: HYDROLASE
Source organism: Ideonella sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-10-21
Authors: Wei, H.L., Gao, S.F., Li, Q., Han, X., Gao, J., Liu, W.D.
PDB entry 8h85: Trans-3/4-proline-hydroxylase H11 with 3-hydroxyl-proline
Classification: STRUCTURAL PROTEIN
Source organism: uncultured bacterium esnapd13
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-10-21
Authors: Gong, W.M., Hu, X.Y.
PDB entry 8h86: Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 in lipid nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Hyphochytrium catenoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2022-10-21
Authors: Tajima, S., Kim, Y., Yamashita, K., Fukuda, M., Deisseroth, K., Kato, H.E.
PDB entry 8h87: Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR2 in lipid nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Hyphochytrium catenoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2022-10-21
Authors: Tajima, S., Kim, Y., Yamashita, K., Fukuda, M., Deisseroth, K., Kato, H.E.
PDB entry 8h89: Capsid of Ralstonia phage GP4
Classification: VIRUS
Source organism: Ralstonia phage GP4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-10-22
Authors: Liu, H.R., Chen, W.Y.
PDB entry 8h8a: Type VI secretion system effector RhsP in its post-autoproteolysis and monomeric form
Classification: TOXIN
Source organism: Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-10-22
Authors: Tang, L., Dong, S.Q., Rasheed, N., Wu, H.W., Zhou, N.K., Li, H.D., Wang, M.L., Zheng, J., He, J., Chao, W.C.H.
PDB entry 8h8b: Type VI secretion system effector RhsP in its pre-autoproteolysis and monomeric form
Classification: TOXIN
Source organism: Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2022-10-22
Authors: Tang, L., Dong, S.Q., Rasheed, N., Wu, H.W., Zhou, N.K., Li, H.D., Wang, M.L., Zheng, J., He, J., Chao, W.C.H.
PDB entry 8h8c: Type VI secretion system effector RhsP in its post-autoproteolysis and dimeric form
Classification: TOXIN
Source organism: Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-10-22
Authors: Tang, L., Dong, S.Q., Rasheed, N., Wu, H.W., Zhou, N.K., Li, H.D., Wang, M.L., Zheng, J., He, J., Chao, W.C.H.
PDB entry 8h8d: Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (intermediate state)
Classification: MEMBRANE PROTEIN
Source organism: Xenopus tropicalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.26 Å
Deposited: 2022-10-22
Authors: Chi, P., Wang, X., Li, J., Li, K., Zhang, Y., Geng, J., Wu, J., Deng, D.
PDB entry 8h8e: Structure of the dimeric Xenopus tropical acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (closed state)
Classification: MEMBRANE PROTEIN
Source organism: Spodoptera frugiperda; Xenopus tropicalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2022-10-22
Authors: Chi, P., Wang, X., Li, J., Li, K., Zhang, Y., Geng, J., Wu, J., Deng, D.
PDB entry 8h8f: Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR (resting state)
Classification: MEMBRANE PROTEIN
Source organism: Xenopus tropicalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-10-22
Authors: Chi, P., Wang, X., Li, J., Li, K., Zhang, Y., Geng, J., Wu, J., Deng, D.
PDB entry 8h8h: Crystal structure of the N-terminal domain of H-NS family protein TurB (TurB_nt50)
Classification: TRANSCRIPTION
Source organism: Pseudomonas putida KT2440
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-10-22
Authors: Vasileva, D., Suzuki-Minakuchi, C., Arakawa, T., Nojiri, H.
PDB entry 8h8i: Triterpenoid saponin acetyltransferase, AmAT7-3
Classification: BIOSYNTHETIC PROTEIN
Source organism: Astragalus membranaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2022-10-22
Authors: Wang, L.L.
PDB entry 8h8j: Lodoxamide-bound GPR35 in complex with G13
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-23
Authors: Yuan, Q., Duan, J., Liu, Q., Xu, H.E., Jiang, Y.
PDB entry 8h8l: Crystal structure of apo-R52F/E56F/R59F/E63F-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-10-23
Authors: Hishikawa, Y., Noya, H., Maity, B., Abe, S., Ueno, T.
PDB entry 8h8m: Crystal structure of apo-E53F/E57F/E60F/E64F-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-10-23
Authors: Hishikawa, Y., Noya, H., Maity, B., Abe, S., Ueno, T.
PDB entry 8h8n: Crystal structure of apo-R52Y/E56Y/R59Y/E63Y-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-10-23
Authors: Hishikawa, Y., Noya, H., Maity, B., Abe, S., Ueno, T.
PDB entry 8h8o: Crystal structure of apo-R52W/E56W/R59W/E63W-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-10-23
Authors: Hishikawa, Y., Noya, H., Maity, B., Abe, S., Ueno, T.
PDB entry 8h8p: Crystal structure of thiomorpholine-carboxylate dehydrogenase from Candida parapsilosis.
Classification: OXIDOREDUCTASE
Source organism: Candida parapsilosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-10-24
Authors: Uma Mahesh, M.V.N., Abhishek, S., Faidh, M.A., Rajakumara, E., Chadha, A.
PDB entry 8h8q: Fab-amyloid beta fragment complex at neutral pH
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-10-24
Authors: Kita, A., Irie, K., Irie, Y., Matsushima, Y., Miki, K.
PDB entry 8h8r: Bovine Heart Cytochrome c Oxidase in the Calcium-bound Fully Oxidized State
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-24
Authors: Muramoto, K., Shinzawa-Itoh, K.
PDB entry 8h8s: Bovine Heart Cytochrome c Oxidase in the Calcium-bound Fully Reduced State
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-24
Authors: Muramoto, K., Shinzawa-Itoh, K.
PDB entry 8h8t: Room-temperature structure of lysozyme by pink-beam serial crystallography (50 ms, edge)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-24
Authors: Kim, Y., Nam, K.H.
PDB entry 8h8u: Room-temperature structure of lysozyme by pink-beam serial crystallography (50 ms, center)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-24
Authors: Kim, Y., Nam, K.H.
PDB entry 8h8v: Room-temperature structure of lysozyme by pink-beam serial crystallography (100 ms, edge)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-24
Authors: Kim, Y., Nam, K.H.
PDB entry 8h8w: Room-temperature structure of lysozyme by pink-beam serial crystallography (100 ms, center)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-24
Authors: Kim, Y., Nam, K.H.
PDB entry 8h8x: Cryo-EM structure of HACE1 monomer
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2022-10-24
Authors: Singh, S., Machida, S., Tulsian, N.K., Choong, Y.K., Ng, J., Shanker, S., Yaochen, L.D., Shi, J., Sivaraman, J.
PDB entry 8h8y: Crystal structure of AbHheG from Acidimicrobiia bacterium
Classification: OXIDOREDUCTASE
Source organism: Acidimicrobiia bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-10-24
Authors: Zhou, C.H., Chen, X., Han, X., Liu, W.D., Wu, Q.Q., Zhu, D.M., Ma, Y.H.
PDB entry 8h91: Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with nanobody N19
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2022-10-24
Authors: Zhang, Y.T., Li, J., Zhang, J.
PDB entry 8h92: Ziziphus jujuba adenylyl cyclase
Classification: PLANT PROTEIN
Source organism: Ziziphus jujuba
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-10-24
Authors: Liu, Z.G., Wang, L.L., Yuan, Y., Liu, M.J.
PDB entry 8h93: Structure of dimeric mouse SCMC core complex
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2022-10-24
Authors: Chi, P., Ou, G., Han, Z., Li, J., Deng, D.
PDB entry 8h94: Structure of mouse SCMC bound with KH domain of FILIA
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-10-24
Authors: Chi, P., Ou, G., Han, Z., Li, J., Deng, D.
PDB entry 8h95: Structure of mouse SCMC bound with full-length FILIA
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2022-10-24
Authors: Chi, P., Ou, G., Han, Z., Li, L., Deng, D.
PDB entry 8h96: Structure of mouse SCMC core complex
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2022-10-24
Authors: Chi, P., Ou, G., Li, J., Han, Z., Deng, D.
PDB entry 8h97: GH86 agarase Aga86A_Wa
Classification: HYDROLASE
Source organism: Wenyingzhuangia sp. OF219
Experimental method: X-RAY DIFFRACTION
Resolution: 2.194 Å
Deposited: 2022-10-25
Authors: Zhang, Y.Y., Dong, S., Feng, Y.G., Chang, Y.G.
PDB entry 8h98: Crystal structure of chemically modified E. coli ThrS catalytic domain 1
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-10-25
Authors: Qiao, H., Xia, M., Wang, J., Fang, P.
PDB entry 8h99: Crystal structure of E. coli ThrS catalytic domain mutant
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-10-25
Authors: Qiao, H., Xia, M., Wang, J., Fang, P.
PDB entry 8h9a: Crystal structure of chemically modified E. coli ThrS catalytic domain 2
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-10-25
Authors: Qiao, H., Xia, M., Wang, J., Fang, P.
PDB entry 8h9b: Crystal structure of chemically modified E. coli ThrS catalytic domain 3
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2022-10-25
Authors: Qiao, H., Xia, M., Wang, J., Fang, P.
PDB entry 8h9c: Crystal structure of chemically modified E. coli ThrS catalytic domain 4
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-10-25
Authors: Qiao, H., Xia, M., Wang, J., Fang, P.
PDB entry 8h9d: Crystal structure of Cas12a protein
Classification: DNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-10-25
Authors: Jianwei, L., Jobichen, C., Sivaraman, J.
PDB entry 8h9e: Human ATP synthase F1 domain, state 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9f: Human ATP synthase state 1 subregion 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9g: Human ATP synthase state 1 subregion 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9h: Crystal structure of ZBTB7A in complex with GACCC-containing sequence
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-25
Authors: Yang, Y.
PDB entry 8h9i: Human ATP synthase F1 domain, state2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9j: Human ATP synthase state2 subregion 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9k: Human ATP synthase state 2 subregion 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9l: Human ATP synthase F1 domain, state 3a
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9m: Human ATP synthase state 3a subregion 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9n: Human ATP synthase state 3a subregion 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9o: Crystal structure of voltage-gated sodium channel NavAb N49K mutant in sodium ion condition
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-10-25
Authors: Irie, K.
PDB entry 8h9p: Human ATP synthase F1 domain, state 3b
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9q: Human ATP synthase state 3b subregion 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9r: Human ATP synthase state 3b subregion 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9s: Human ATP synthase state 1 (combined)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9t: Human ATP synthase state 2 (combined)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9u: Human ATP synthase state 3a (combined)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9v: Human ATP synthase state 3b (combined)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2022-10-25
Authors: Lai, Y., Zhang, Y., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8h9w: Crystal structure of voltage-gated sodium channel NavAb N49K mutant in calcium ion condition
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-10-25
Authors: Irie, K.
PDB entry 8h9x: Crystal structure of voltage-gated sodium channel NavAb N49K/L176Q mutant in sodium ion condition
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-10-25
Authors: Irie, K., Oda, Y.
PDB entry 8h9y: Crystal structure of voltage-gated sodium channel NavAb N49K/L176Q mutant in calcium ion condition
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-10-25
Authors: Irie, K., Oda, Y.
PDB entry 8h9z: Annexin A5 protein mutant
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2022-10-26
Authors: Hua, Z.C., Tang, W.
PDB entry 8ha0: Molecular recognition of two endogenous hormones by the human parathyroid hormone receptor-1
Classification: LIPID BINDING PROTEIN/HORMONE/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-10-26
Authors: Zhao, L., Xu, H.E., Yuan, Q.
PDB entry 8ha1: Crystal structure of voltage-gated sodium channel NavAb N49K/L176G mutant in sodium ion condition
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-10-26
Authors: Irie, K., Oda, Y.
PDB entry 8ha2: Crystal structure of voltage-gated sodium channel NavAb N49K/L176G mutant in calcium ion condition
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-10-26
Authors: Irie, K., Oda, Y.
PDB entry 8hac: A novel dimer configuration of a diatom Get3 forming a tetrameric complex with its tail-anchored membrane cargo
Classification: CHAPERONE
Source organism: Phaeodactylum tricornutum CCAP 1055/1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2022-10-26
Authors: Chang, H.Y., Ko, T.P.
PDB entry 8had: A novel dimer configuration of a diatom Get3 forming a tetrameric complex with its tail-anchored membrane cargo
Classification: CHAPERONE
Source organism: Phaeodactylum tricornutum CCAP 1055/1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.81 Å
Deposited: 2022-10-26
Authors: Chang, H.Y., Ko, T.P.
PDB entry 8hae: Cryo-EM structure of HACE1 dimer
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.55 Å
Deposited: 2022-10-26
Authors: Singh, S., Machida, S., Tulsian, N.K., Choong, Y.K., Ng, J., Shanker, S., Yaochen, L.D., Shi, J., Sivaraman, J., Machida, S.
PDB entry 8haf: PTHrP-PTH1R-Gs complex
Classification: LIPID BINDING PROTEIN/HORMONE/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-10-26
Authors: Zhao, L., Xu, H.E., Yuan, Q.
PDB entry 8hag: Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (3.2 angstrom resolution)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-26
Authors: Kikuchi, M., Morita, S., Wakamori, M., Shin, S., Uchikubo-Kamo, T., Shirouzu, M., Umehara, T.
PDB entry 8hah: Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (3.9 angstrom resolution)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-10-26
Authors: Kikuchi, M., Morita, S., Wakamori, M., Shin, S., Uchikubo-Kamo, T., Shirouzu, M., Umehara, T.
PDB entry 8hai: Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (4.7 angstrom resolution)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2022-10-26
Authors: Kikuchi, M., Morita, S., Wakamori, M., Shin, S., Uchikubo-Kamo, T., Shirouzu, M., Umehara, T.
PDB entry 8haj: Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (4.8 angstrom resolution)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2022-10-26
Authors: Kikuchi, M., Morita, S., Wakamori, M., Shin, S., Uchikubo-Kamo, T., Shirouzu, M., Umehara, T.
PDB entry 8hak: Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (4.5 angstrom resolution)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-10-26
Authors: Kikuchi, M., Morita, S., Wakamori, M., Shin, S., Uchikubo-Kamo, T., Shirouzu, M., Umehara, T.
PDB entry 8hal: Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2022-10-26
Authors: Kikuchi, M., Morita, S., Wakamori, M., Shin, S., Uchikubo-Kamo, T., Shirouzu, M., Umehara, T.
PDB entry 8ham: Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 2
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-10-26
Authors: Kikuchi, M., Morita, S., Wakamori, M., Shin, S., Uchikubo-Kamo, T., Shirouzu, M., Umehara, T.
PDB entry 8han: Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 3
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2022-10-26
Authors: Kikuchi, M., Morita, S., Wakamori, M., Shin, S., Uchikubo-Kamo, T., Shirouzu, M., Umehara, T.
PDB entry 8hao: Human parathyroid hormone receptor-1 dimer
Classification: LIPID BINDING PROTEIN/HORMONE/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2022-10-26
Authors: Zhao, L., Xu, H.E., Yuan, Q.
PDB entry 8hap: Crystal structure of thermostable acetaldehyde dehydrogenase from hyperthermophilic archaeon Sulfolobus tokodaii
Classification: OXIDOREDUCTASE
Source organism: Sulfurisphaera tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-26
Authors: Mine, S., Nakabayashi, M., Ishikawa, K.
PDB entry 8haq: The complex of Src with GW8510
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2022-10-26
Authors: Zhu, S.J., Bi, S.Z.
PDB entry 8har: SAH-bound C-Methyltransferase Fur6 from Streptomyces sp. KO-3988
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2022-10-26
Authors: Noguchi, T., Nagata, R., Tomita, T., Kuzuyama, T.
PDB entry 8has: NARROW LEAF 1-close from Japonica
Classification: SURFACTANT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2022-10-26
Authors: Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.
PDB entry 8hat: NARROW LEAF 1-open from Japonica
Classification: SURFACTANT PROTEIN
Source organism: Oryza sativa subsp. japonica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2022-10-26
Authors: Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.
PDB entry 8hau: NARROW LEAF 1 from Indica
Classification: SURFACTANT PROTEIN
Source organism: Oryza sativa Indica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2022-10-26
Authors: Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.
PDB entry 8hav: An auto-activation mechanism of plant non-specific phospholipase C
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-10-26
Authors: Zhao, F., Fan, R.Y., Guan, Z.Y., Guo, L., Yin, P.
PDB entry 8haw: An auto-activation mechanism of plant non-specific phospholipase C
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-10-26
Authors: Zhao, F., Fan, R.Y., Guan, Z.Y., Guo, L., Yin, P.
PDB entry 8hax: Brucella melitensis 7alpha-Hydroxysteroid Dehydrogenase mutant-I258M/K262T
Classification: OXIDOREDUCTASE
Source organism: Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2022-10-27
Authors: Liu, Z.Y., Zhang, R.Z.
PDB entry 8hay: d4-bound btDPP4
Classification: HYDROLASE/INHIBITOR
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2022-10-27
Authors: Hang, J., Jiang, C., Wang, K., Zhang, Z., Guo, F., Liu, J., Wang, G., Lei, X., Gonzalez, F., Qiao, J.
PDB entry 8haz: Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand I
Classification: OXIDOREDUCTASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2022-10-27
Authors: Shang, G., Chen, Z.
PDB entry 8hb0: Structure of human SGLT2-MAP17 complex with TA1887
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-10-27
Authors: Hiraizumi, M., Kishida, H., Miyaguchi, I., Nureki, O.
PDB entry 8hb1: Crystal structure of NAD-II riboswitch (two strands) with NMN
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2022-10-27
Authors: Peng, X., Lilley, D.M.J., Huang, L.
PDB entry 8hb2: Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand II
Classification: OXIDOREDUCTASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2022-10-27
Authors: Shang, G., Chen, Z.
PDB entry 8hb3: Crystal structure of NAD-II riboswitch (two strands) with NR
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2022-10-27
Authors: Peng, X., Lilley, D.M.J., Huang, L.
PDB entry 8hb5: Crystal structure of Mincle in complex with HD-275
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-10-27
Authors: Ishizuka, S., Nagae, M., Yamasaki, S.
PDB entry 8hb8: Crystal structure of NAD-II riboswitch (single strand) with NMN
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-10-27
Authors: Peng, X., Lilley, D.M.J., Huang, L.
PDB entry 8hb9: Crystal Structure of Human IDH1 R132H Mutant in Complex with NADPH and Compound IHMT-IDH1-053
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-10-27
Authors: Guo, G., Wang, B., Liu, J., Liu, Q.
PDB entry 8hba: Crystal structure of NAD-II riboswitch (single strand) with NAD
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2022-10-27
Authors: Peng, X., Lilley, D.M.J., Huang, L.
PDB entry 8hbb: Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand III
Classification: OXIDOREDUCTASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2022-10-27
Authors: Shang, G., Chen, Z.
PDB entry 8hbc: Crystal structure of the CysR-CTLD3 fragment of human DEC205
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2022-10-28
Authors: Kong, D., Yu, B., Hu, Z., Cheng, C., Cao, L., He, Y.
PDB entry 8hbd: Cryo-EM structure of IRL1620-bound ETBR-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2022-10-28
Authors: Yuan, Q., Ji, Y., Jiang, Y., Duan, J., Xu, H.E.
PDB entry 8hbe: Structure of human soluble guanylate cyclase in the inactive state at 3.1 angstrom
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-28
Authors: Chen, L., Liu, R.
PDB entry 8hbf: Structure of human soluble guanylate cyclase in the NO+Rio state at 3.1 angstrom
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-28
Authors: Chen, L., Liu, R.
PDB entry 8hbg: FMDV (A/TUR/14/98) in complex with M678F
Classification: VIRUS
Source organism: Foot-and-mouth disease virus A; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-10-28
Authors: Li, H.Z., Dong, H., Liu, P.
PDB entry 8hbh: Structure of human soluble guanylate cyclase in the NO-activated state at 3.1 angstrom
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-28
Authors: Chen, L., Liu, R.