LiteFold/PDB huggingface dataset:
PDB entry 9d96: KIR3DL1 - HLA-B38-YHL complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; human gammaherpesvirus 4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-08-21
Authors: Zhu, S., Vivian, J., Petersen, J., Rossjohn, J.
PDB entry 9d97: KIR3DL1 - HLA-B*38-YHE complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-08-21
Authors: Zhu, S., Vivian, J., Petersen, J., Rossjohn, J.
PDB entry 9d98: Cryo-EM structure of HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-VRC34.01 Fab with two gp120 protomers rotated, Population 5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.19 Å
Deposited: 2024-08-21
Authors: Thakur, B., Acharya, P.
PDB entry 9d99: Incorporation of dehydro-aza-proline residues in avian pancreatic polypeptide: prototype sequence
Classification: SIGNALING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-08-21
Authors: Wright, M.M., Rajewski, B.H., Gerrein, T.A., Smith, L.J., Horne, W.S., Del Valle, J.R.
PDB entry 9d9a: Incorporation of dehydro-aza-proline residues in avian pancreatic polypeptide: Aza-Pro substitution at position 4
Classification: SIGNALING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-08-21
Authors: Wright, M.M., Rajewski, B.H., Gerrein, T.A., Smith, L.J., Horne, W.S., Del Valle, J.R.
PDB entry 9d9b: Incorporation of dehydro-aza-proline residues in avian pancreatic polypeptide: Aza-Pro substitution at position 6
Classification: SIGNALING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-08-21
Authors: Wright, M.M., Rajewski, B.H., Gerrein, T.A., Smith, L.J., Horne, W.S., Del Valle, J.R.
PDB entry 9d9c: Incorporation of dehydro-aza-proline residues in avian pancreatic polypeptide: Aza-Pro substitution at positions 4 and 6
Classification: SIGNALING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-08-21
Authors: Wright, M.M., Rajewski, B.H., Gerrein, T.A., Smith, L.J., Horne, W.S., Del Valle, J.R.
PDB entry 9d9d: Candida albicans Hsp90 nucleotide binding domain in complex with BRI2216
Classification: CHAPERONE
Source organism: Candida albicans SC5314
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-08-21
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 9d9e: Candida albicans Hsp90 nucleotide binding domain in complex with BRI2217
Classification: CHAPERONE
Source organism: Candida albicans SC5314
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2024-08-21
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 9d9f: Candida albicans Hsp90 nucleotide binding domain in complex with BRI2311
Classification: CHAPERONE
Source organism: Candida albicans SC5314
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-08-21
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 9d9g: Candida albicans Hsp90 nucleotide binding domain in complex with BRI2312
Classification: CHAPERONE
Source organism: Candida albicans SC5314
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-08-21
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 9d9h: Human Hsp90b nucleotide binding domain in complex with BRI2311
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-08-21
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 9d9i: Human Hsp90b nucleotide binding domain in complex with BRI2312
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-21
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 9d9j: T4 Lysozyme A73H/G77H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-08-21
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9d9k: Crystal structure of MurC from Pseudomonas aeruginosa in complex with inhibitor M17
Classification: LIGASE/INHIBITOR
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2024-08-21
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9d9l: Mycobacteriophage Bxb1 tail tube segment - Composite map and model
Classification: VIRAL PROTEIN
Source organism: Mycobacterium phage Bxb1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-08-21
Authors: Freeman, K.G.
PDB entry 9d9m: Crystal structure of MurC from Pseudomonas aeruginosa in complex (sulfate bound)
Classification: LIGASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-08-21
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9d9n: Crystal structure of NDM-1 complexed with compound 5
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-08-21
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9d9o: Crystal structure of CVB3 replication-linked RNA stem-loop D in complex with 3C protein
Classification: VIRAL PROTEIN/RNA
Source organism: Coxsackievirus B3; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-08-21
Authors: Das, N.K., Koirala, D.
PDB entry 9d9p: Crystal structure of CVB3 replication-linked RNA in complex with 3C protein
Classification: VIRAL PROTEIN/RNA
Source organism: Coxsackievirus B3; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-08-21
Authors: Das, N.K., Koirala, D.
PDB entry 9d9q: Crystal structure of IgG1 FC M252R at pH 8.0
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2024-08-21
Authors: Reddem, E.R., Shapiro, L.
PDB entry 9d9r: X-ray structure of ALX4 homeodomain dimer bound to DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.389 Å
Deposited: 2024-08-21
Authors: Yuan, Z., Kovall, R.A.
PDB entry 9d9s: Cryo-EM structure of Human Enterovirus D94 full particle
Classification: VIRUS
Source organism: enterovirus D94
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-21
Authors: Fu, J., Klose, T., Rossmann, M.R., Kuhn, R., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 9d9t: Human norovirus GII.4 Sydney protease R112A mutant in complex with rupintrivir
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-21
Authors: Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9d9u: Rhodospirillum rubrum Nitrogenase-like Methylthio-alkane Reductase Complex with an Oxidized P-cluster
Classification: OXIDOREDUCTASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2024-08-21
Authors: Kreitler, D.F., Hu, G., North, J.A.
PDB entry 9d9v: X-Ray structure of ALX4 homeodomain
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-08-21
Authors: Yuan, Z., Kovall, R.A.
PDB entry 9d9w: Mycobacteriophage Bxb1 C1 Capsid and Portal - Composite map and model
Classification: VIRAL PROTEIN
Source organism: Mycobacterium phage Bxb1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-08-21
Authors: Freeman, K.G.
PDB entry 9d9x: Mycobacteriophage Bxb1 Capsid - Composite map and model
Classification: VIRAL PROTEIN
Source organism: Mycobacterium phage Bxb1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-21
Authors: Freeman, K.G.
PDB entry 9d9y: Human norovirus GI.1 Norwalk protease in complex with rupintrivir
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-08-21
Authors: Zhao, B., Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9d9z: Structure of human UBR4-KCMF1-CaM E3 ligase complex (Silencing Factor of the Integrated stress response, SiFI)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-08-21
Authors: Yang, Z., Rape, M.
PDB entry 9da0: Human norovirus GII.4 Houston R112A mutant protease in complex with rupintrivir
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-08-21
Authors: Zhao, B., Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9da1: Crystal structure of human DNPH1 bound to inhibitor 1a
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-08-21
Authors: Wagner, A.G., Schramm, V.L., Almo, S.C., Ghosh, A.
PDB entry 9da2: Crystal structure of human DNPH1 bound to inhibitor 1b
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2024-08-21
Authors: Wagner, A.G., Schramm, V.L., Almo, S.C., Ghosh, A.
PDB entry 9da3: Crystal structure of human DNPH1 bound to inhibitor 2a
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2024-08-21
Authors: Wagner, A.G., Schramm, V.L., Almo, S.C., Ghosh, A.
PDB entry 9da4: Crystal structure of human DNPH1 bound to inhibitor 2b
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-08-21
Authors: Wagner, A.G., Schramm, V.L., Almo, S.C., Ghosh, A.
PDB entry 9da5: Crystal structure of human DNPH1 bound to inhibitor 2c
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2024-08-21
Authors: Wagner, A.G., Schramm, V.L., Almo, S.C., Ghosh, A.
PDB entry 9da6: Crystal structure of human DNPH1 bound to inhibitor 3a
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-08-21
Authors: Wagner, A.G., Schramm, V.L., Almo, S.C., Ghosh, A.
PDB entry 9da7: Human norovirus GII.4 Houston protease in complex with rupintrivir
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-21
Authors: Zhao, B., Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9da8: Tau-Microtubule structure in the presence of ATP
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-08-21
Authors: Perez-Bertoldi, J.M., Nogales, E.
PDB entry 9da9: Crystal structure of GluN1/GluN2A agonist-binding domains in complex with 7CKA and glutamate
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-08-22
Authors: Bosco, J., Yates-Hansen, C.K., McClelland, L.J., Voronina, E., Hansen, K.B.
PDB entry 9dae: Cryo-EM Structure of the Multimeric Phosphoenolpyruvate Binding Domain of Staphylothermus marinus Phosphoenolpyruvate Synthase
Classification: CYTOSOLIC PROTEIN
Source organism: Staphylothermus marinus F1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2024-08-22
Authors: Legare, S., Kirby, M.W., Stetefeld, J.
PDB entry 9daf: L-asparaginase II (EcA2-K12)
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-08-22
Authors: de Sa Ribeiro, F., Costa, A.C., Araujo, T.S., Almeida, M.S., Lima, L.M.T.R.
PDB entry 9dag: Crystal structure of NDM-1 complexed with compound 13
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-08-22
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9dah: L-asparaginase II (EcA2-4M)
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-08-22
Authors: de Sa Ribeiro, F., Costa, A.C., Araujo, T.S., Almeida, M.S., Lima, L.M.T.R.
PDB entry 9dai: Crystal structure of Trk-A in complex with Staurosporin
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.864 Å
Deposited: 2024-08-22
Authors: Johnson, E., Greasley, S.E., Kraus, M.L., Cronin, C.N.
PDB entry 9daj: Human norovirus GII.4 Sydney protease in complex with rupintrivir
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-22
Authors: Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9dak: Merbecovirus PnNL2018B Spike glycoprotein RBD bound to the P. Nathusii ACE2
Classification: VIRAL PROTEIN
Source organism: Merbecovirus; Pipistrellus nathusii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-08-22
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dal: Human norovirus GII.3 R112A mutant protease in complex with rupintrivir
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-22
Authors: Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9dan: STING oligomer bound to PI(4,5)P2
Classification: SIGNALING PROTEIN/ACTIVATOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-08-22
Authors: Li, J., Zhang, X., Bai, X.
PDB entry 9dao: AlphaIIbbeta3 in fully-extended conformation in complex with R6H8 Fab
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-22
Authors: Walz, T., Coller, B.S., Wang, J.L., Buitrago, L., Wang, L., Li, J.H.
PDB entry 9dap: Human norovirus GII.3 protease in complex with rupintrivir
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2024-08-22
Authors: Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9daq: Structure of E. coli dihydrofolate reductase (DHFR) in an occluded conformation and in complex with a cycloguanil derivative
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-08-22
Authors: Berkovich, D.A., Jez, J.M.
PDB entry 9dar: Structure of E. coli dihydrofolate reductase (DHFR) in an occluded conformation and in complex with cycloguanil
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-08-22
Authors: Berkovich, D.A., Jez, J.M.
PDB entry 9das: Crystal structure of vWFA domain from large adhesion protein of Aeromonas hydrophila
Classification: CELL ADHESION
Source organism: Aeromonas hydrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-08-22
Authors: Vance, T.D.R., Ye, Q., Davies, P.L.
PDB entry 9dat: STING oligomer bound to PI(3,5)P2
Classification: SIGNALING PROTEIN/ACTIVATOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-22
Authors: Li, J., Zhang, X., Bai, X.
PDB entry 9dau: S. thermophilus class III ribonucleotide reductase with dATP and TTP
Classification: OXIDOREDUCTASE
Source organism: Streptococcus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-08-22
Authors: Andree, G.A., Drennan, C.L.
PDB entry 9dav: STING oligomer bound to cGAMP and STG2 in the presence of PI4P
Classification: SIGNALING PROTEIN/ACTIVATOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-22
Authors: Li, J., Zhang, X., Bai, X.
PDB entry 9daw: STING oligomer bound to cGAMP, C53 and PI(3,5)P2
Classification: SIGNALING PROTEIN/ACTIVATOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-22
Authors: Li, J., Zhang, X., Bai, X.
PDB entry 9dax: The structure of AlphaIIbbeta3 in apo state
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-22
Authors: Walz, T., Coller, B.S., Wang, J.L., Buitrago, L., Wang, L., Li, J.H.
PDB entry 9day: Crystal Structure of the Transcriptional Regulator HcpR from Porphyromonas Gingivalis
Classification: TRANSCRIPTION
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-08-22
Authors: Musayev, F.N., Escalante, C.R., Belvin, B.R., Lewis, J.P.
PDB entry 9daz: Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. Complex of fAPN with FCoV-23 RBD
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Feline coronavirus; Felis catus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-08-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9db0: Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S short
Classification: VIRAL PROTEIN
Source organism: Feline coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-08-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9db1: Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S Do in proximal conformation (local refinement)
Classification: VIRAL PROTEIN
Source organism: Feline coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-08-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9db2: Class Ia ribonucleotide reductase with mechanism-based inhibitor N3CDP
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-08-23
Authors: Westmoreland, D.E., Drennan, C.L.
PDB entry 9db3: Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long with Do in swung-out conformation
Classification: VIRAL PROTEIN
Source organism: Feline coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-08-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9db5: A DARPin fused to the 1TEL crystallization chaperone via a proline-alanine linker
Classification: PROTEIN BINDING
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-08-23
Authors: Pedroza Romo, M.J., Averett, J.C., Keliiliki, A., Wilson, E.W., Smith, C., Hansen, D., Averett, B., Gonzalez, J., Noakes, E., Nickles, R., Doukov, T., Moody, J.D.
PDB entry 9db6: Sialidase682 co-crystallized with inhibitor DANA
Classification: HYDROLASE
Source organism: Bacteroides finegoldii DSM 17565
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-08-23
Authors: Young, M.A., Rees, S.D., Chang, G.
PDB entry 9db7: Crystal structure of NDM-1 complexed with compound 22
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-08-23
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9db8: Cu-Bound Structure of Computationally Designed Homotrimer Tet4
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9db9: Ni-Bound Structure of Computationally Designed Homotrimer Tet4
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9dba: Co-Bound Structure of Computationally Designed Homotrimer Tet4
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9dbb: Fe-Bound Structure of Computationally Designed Homotrimer Tet4
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9dbc: Mn-Bound Structure of Computationally Designed Homotrimer Tet4
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9dbd: Zn-Bound Structure of a Single-Chain Tet4 Variant with an H38E Mutation
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Neeley, M.N., Tezcan, F.A.
PDB entry 9dbe: Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long domain 0 in swung-out conformation (local refinement)
Classification: VIRAL PROTEIN
Source organism: Feline coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-08-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dbf: Zn-Bound Structure of a Single-Chain Tet4 Variant with an L42W Mutation
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Neeley, M.N., Tezcan, F.A.
PDB entry 9dbh: Structure of Hailong HalB in complex with oligodeoxyadenylate
Classification: ANTIVIRAL PROTEIN/DNA
Source organism: Rhodobacteraceae bacterium QY30; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-08-23
Authors: Tan, J.M.J., Melamed, S., Cofsky, J.C., Hobbs, S.J., Kruse, A.C., Sorek, R., Kranzusch, P.J.
PDB entry 9dbi: Structure of Hailong HalB D21A/D23A mutant
Classification: ANTIVIRAL PROTEIN/DNA
Source organism: Rhodobacteraceae bacterium QY30
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-08-23
Authors: Tan, J.M.J., Melamed, S., Cofsky, J.C., Hobbs, S.J., Kruse, A.C., Sorek, R., Kranzusch, P.J.
PDB entry 9dbj: Structure of Hailong HalB R164A mutant with non-hydrolyzable dATP
Classification: ANTIVIRAL PROTEIN
Source organism: Rhodobacteraceae bacterium QY30
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-08-23
Authors: Tan, J.M.J., Melamed, S., Cofsky, J.C., Hobbs, S.J., Kruse, A.C., Sorek, R., Kranzusch, P.J.
PDB entry 9dbk: Full-length apo human voltage-gated sodium channel 1.8 (NaV1.8)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-08-23
Authors: Neumann, B., McCarthy, S., Gonen, S.
PDB entry 9dbl: Full-length apo human voltage-gated sodium channel 1.8 (NaV1.8), class I
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-08-23
Authors: Neumann, B., McCarthy, S., Gonen, S.
PDB entry 9dbm: Full-length apo human voltage-gated sodium channel 1.8 (NaV1.8), class II
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-08-23
Authors: Neumann, B., McCarthy, S., Gonen, S.
PDB entry 9dbn: Tarantula venom peptide Protoxin-I bound to full-length human voltage-gated sodium channel 1.8 (NaV1.8)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-08-23
Authors: Neumann, B., McCarthy, S., Gonen, S.
PDB entry 9dbo: Crystal structure of a synthetic Fab (R3E9) in complex with the FRB domain of mTOR
Classification: Transferase/Immune System
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-08-23
Authors: O'Leary, K.M., Slezak, T., Kossiakoff, A.A.
PDB entry 9dbp: Crystal structure of the LSD1/CoREST histone demethylase in complex with the cofactor FAD and the inhibitor GSK690
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2024-08-23
Authors: An, S., Engel, J., Wang, Y., Yu, L., Cho, U.S.
PDB entry 9dbq: Cryo-EM structure of human ABCB6 transporter in an inward-facing conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-23
Authors: Shaik, M.M., Myasnikov, A., Oldham, M.L., Baril, S.A., Kalathur, R.C., Schuetz, J.D.
PDB entry 9dbr: Danio rerio TREK-1:CBD complex
Classification: MEMBRANE PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2024-08-23
Authors: Docter, T., Brohawn, S.G.
PDB entry 9dbt: Crystal structure of human astrovirus 1 capsid spike bound to human neonatal Fc receptor
Classification: VIRAL PROTEIN/MEMBRANE PROTEIN
Source organism: Homo sapiens; Human astrovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-08-23
Authors: Lentz, A., DuBois, R.M.
PDB entry 9dbu: Apo Structure of Computationally Designed Homotetramer PW1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9dbv: Cu-Bound Structure of Computationally Designed Homotetramer PW1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9dbw: Rh-Bound Structure of Computationally Designed Homotetramer PW1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-08-23
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9dbx: Structure of AG11-2F01 Fab in complex with A/Solomon Islands/3/2006 (H1N1) influenza virus hemagglutinin
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-23
Authors: Mou, Z., Lei, R., Dai, X., Wu, N.
PDB entry 9dby: ncPRC1RYBP bound to singly modified H2AK119Ub nucleosome
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-24
Authors: Godinez-Lopez, V., Valencia-Sanchez, M.I., Armache, J.P., Armache, K.-J.
PDB entry 9dbz: Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long with Do in mixed conformations (global refinement).
Classification: VIRAL PROTEIN
Source organism: Feline coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-08-24
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dc0: Crystal Structure of European Robin CRY1
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Erithacus rubecula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-08-24
Authors: Wickramaratne, A., Chelliah, Y., Green, C.B., Takahashi, J.S., Zoltowski, B.D.
PDB entry 9dc2: Adeno-associated virus 8 capsid
Classification: VIRUS
Source organism: adeno-associated virus 8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2024-08-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9dc3: AAV8 in complex with the AAVX affinity ligand
Classification: VIRUS
Source organism: adeno-associated virus 8; Camelidae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2024-08-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9dc4: Transferrin Binding Protein A in complex with transferrin binding protein B, transferrin and globular domain of TonB
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Neisseria meningitidis; Neisseria meningitidis serogroup B
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-25
Authors: Dubey, S., Noinaj, N.
PDB entry 9dc6: Structure of J-PKAc chimera in complex with Aplithianine e1
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-08-25
Authors: Martinez Fiesco, J.A., Zhang, P.
PDB entry 9dc7: AAV5 at 80 Degree Celsius
Classification: VIRUS
Source organism: adeno-associated virus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-08-25
Authors: McKenna, R., Bennett, A., Gliwa, K.
PDB entry 9dc8: Mtb GuaB dCBS in complex with inhibitor G1
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-08-25
Authors: Harris, S.F., Wu, P.
PDB entry 9dc9: Mtb GuaB dCBS in complex with inhibitor compound 5
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-08-25
Authors: Harris, S.F., Wu, P.
PDB entry 9dca: S. thermophilus class III ribonucleotide reductase with ATP and TTP
Classification: OXIDOREDUCTASE
Source organism: Streptococcus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-08-25
Authors: Andree, G.A., Drennan, C.L.
PDB entry 9dcb: The Structure of AAV5 at 4 Degrees
Classification: VIRUS
Source organism: adeno-associated virus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-08-25
Authors: Bennett, A.B., McKenna, R.
PDB entry 9dcc: The Structure of AAV5 at 55 Degrees Celsius
Classification: VIRUS
Source organism: adeno-associated virus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-08-25
Authors: Bennett, A.B., McKenna, R.
PDB entry 9dcd: Structure of J-PKAc chimera in complex with Aplithianine d2
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-08-25
Authors: Martinez Fiesco, J.A., Zhang, P.
PDB entry 9dcf: Structure of Coxsackievirus B3 cloverleaf RNA in complex with 3Cpro dimer
Classification: RNA BINDING PROTEIN/RNA
Source organism: Coxsackievirus B3 (strain Nancy)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2024-08-26
Authors: Gottipati, K., Dias, D.S.A.N., Choi, K.H.
PDB entry 9dcg: Crystal Structure of the Thiol:Disulfide Interchange Protein DsbC from Vibrio cholerae
Classification: OXIDOREDUCTASE
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-08-26
Authors: Kim, Y., Maltseva, N., Shatsman, S., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dch: Single-stranded RNA-mediated PRC2 dimer
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-08-26
Authors: Song, J.S., Kasinath, V.K.
PDB entry 9dci: Mycobacterium tuberculosis UvrD1 dimer: apo compact conformation.
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2024-08-26
Authors: Chadda, A., Galburt, E.A.
PDB entry 9dcj: Pentameric Structure of MERS-CoV Envelope Protein Transmembrane Domain Determined by Solid-State NMR
Classification: VIRAL PROTEIN
Source organism: Betacoronavirus England 1
Experimental method: SOLID-STATE NMR
Deposited: 2024-08-26
Authors: Sucec, I., Hong, M.
PDB entry 9dcl: [2Fe-2S] SufU from Mycobacterium tuberculosis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-08-26
Authors: Stuteley, S.M., Bashiri, G.
PDB entry 9dcm: Sucrose-phosphate synthase from Leishmania major
Classification: SUGAR BINDING PROTEIN
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2024-08-27
Authors: Gorman, M.A., Parker, M.W., McConville, M.J.
PDB entry 9dcn: Solution structure of the translation initiation factor IF-1 from Neisseria gonorrhoeae (NCCP11945). Seattle Structural Genomics Center for Infectious Disease target NegoA.17902.a
Classification: RNA BINDING PROTEIN
Source organism: Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Experimental method: SOLUTION NMR
Deposited: 2024-08-27
Authors: Buchko, G.W., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dco: Crystal structure of epoxyqueuosine reductase QueH D13N mutant from Thermotoga maritima
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-08-27
Authors: Hu, Y., Bruner, S.D.
PDB entry 9dcp: Structure of PmHMGR bound to mevalonate, CoA and NAD 1 minute after reaction initiation at pH 9
Classification: OXIDOREDUCTASE/SUBSTRATE/INTERMEDIATE
Source organism: Pseudomonas sp. 'mevalonii'
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2024-08-27
Authors: Purohit, V., Stauffacher, C.V.
PDB entry 9dcq: Bacteroides cellulosyliticus GH13_46 (BcGH13A)
Classification: HYDROLASE
Source organism: Bacteroides cellulosilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-08-27
Authors: Brown, H.A., Koropatkin, N.M.
PDB entry 9dcr: Structure of the TelA-associated type VII secretion system chaperone SIR_0168
Classification: CHAPERONE
Source organism: Streptococcus intermedius B196
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-08-27
Authors: Grebenc, D.W., Kim, Y., Whitney, J.C.
PDB entry 9dcs: Structure of a TelD-associated type VII secretion system DUF4176 protein
Classification: CHAPERONE
Source organism: Streptococcus intermedius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-08-27
Authors: Grebenc, D.W., Kim, Y., Whitney, J.C.
PDB entry 9dct: Structure of the TelB-associated type VII secretion system chaperone SIR_0178
Classification: CHAPERONE
Source organism: Streptococcus intermedius B196
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2024-08-27
Authors: Gkragkopoulou, P., Kim, Y., Whitney, J.C.
PDB entry 9dcw: FKBP1a (FKBP12) co-crystal structure with macrocycle molecular glue
Classification: IMMUNOSUPPRESSANT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.721 Å
Deposited: 2024-08-27
Authors: Salcius, M.J., King, D.A., Clark, K.
PDB entry 9dcx: Crystal Structure of designed allosteric facilitated dissociation switch AS1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dcy: Crystal Structure of Designed allosteric facilitated dissociation switch AS1 in complex state HE
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dcz: Designed allosteric facilitated dissociation switch AS1 in complex state TH with methylated lysines, crystal #1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dd0: Designed allosteric facilitated dissociation switch AS1 in complex state TH with methylated lysines, crystal #2
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.88 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dd1: Designed allosteric facilitated dissociation switch AS1 in complex state THE with methylated lysines
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dd2: Crystal Structure of Designed allosteric facilitated dissociation switch AS5
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dd3: Crystal Structure of Designed allosteric facilitated dissociation switch AS5 in complex state HE
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dd4: Crystal Structure of Designed facilitated dissociation target LHD101An1: LHD101A with an N-terminal extension
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dd5: Crystal Structure of designed conformational switch effector peptide CS221B
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-27
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9dd6: Cryo-EM structure of neutralizing murine antibody WS.HSV-1.24 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-27
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9dd7: Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E.DS
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-08-27
Authors: Roark, R.S., Shapiro, L., Kwong, P.D.
PDB entry 9dd8: Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-08-27
Authors: Roark, R.S., Shapiro, L., Kwong, P.D.
PDB entry 9dd9: Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2024-08-27
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9dda: Cryo-EM structure of gB-Ecto.516P.531E.DS, a prefusion-stabilized HSV-1 glycoprotein B extracellular domain
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-08-27
Authors: Roark, R.S., Shapiro, L., Kwong, P.D.
PDB entry 9ddb: Cryo-EM structure of gB-Ecto.516P.531E, a prefusion-stabilized HSV-1 glycoprotein B extracellular domain
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2024-08-27
Authors: Roark, R.S., Shapiro, L., Kwong, P.D.
PDB entry 9ddc: Cryo-EM structure of gB-Ecto.516P, an HSV-1 glycoprotein B extracellular domain
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-27
Authors: Roark, R.S., Lawrence, L., Kwong, P.D.
PDB entry 9ddd: SufS-SufU complex from Mycobacterium Tuberculosis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-27
Authors: Stuteley, S.M., Bashiri, G.
PDB entry 9dde: ncPRC1RYBP bound to H2AK119Ub/H1.4 chromatosome
Classification: Gene Regulation/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-08-28
Authors: Godinez-Lopez, V., Valencia-Sanchez, M.I., Armache, J.P., Armache, K.-J.
PDB entry 9ddf: SARS-CoV-2 main protease with inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.549 Å
Deposited: 2024-08-28
Authors: Bell, J.A.
PDB entry 9ddg: SARS-CoV-2 main protease with inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-08-28
Authors: Bell, J.A., Lane, W.
PDB entry 9ddl: Glutathione transferase sigma class from Taenia solium 1.3
Classification: TRANSFERASE
Source organism: Taenia solium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-08-28
Authors: Miranda-Blancas, R., Cardona-Echavarria, M.C., Sanchez, C., Sanchez-Perez, L.C., Flores-Lopez, R., Rodriguez-Lima, O., Garcia-Gutierrez, P., Zubillaga, R., Landa, A., Rudino-Pinera, E.
PDB entry 9ddm: E. coli TolAQR conformation I
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-08-28
Authors: Celia, H., Botos, I.
PDB entry 9ddn: E. coli TolAQR conformation II
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-08-28
Authors: Celia, H., Botos, I.
PDB entry 9ddo: E. coli TonB-ExbBD TonB bound to ExbB chain C
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-28
Authors: Celia, H., Botos, I.
PDB entry 9ddp: E. coli TonB-ExbBD TonB bound to ExbB chain E
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-08-28
Authors: Celia, H., Botos, I.
PDB entry 9ddq: E. coli TonB-ExbBD TonB bound to ExbB chain A
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-08-28
Authors: Celia, H., Botos, I.
PDB entry 9ddr: Ternary substrate complex of DNA polymerase iota with DNA (template A), Ca2+, and dTTP
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-08-28
Authors: Frevert, Z., Reusch, D., Freudenthal, B., Washington, M.T.
PDB entry 9dds: Crystal structure of human AAGAB G domain with E144K mutation
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-08-28
Authors: Wang, B., Tian, Y., Yin, Q.
PDB entry 9ddt: AAGAB pseudoGTPase domain in complex with AP-1 clathrin adaptor complex sigma 3 subunit
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-08-28
Authors: Wang, B., Tian, Y., Yin, Q.
PDB entry 9ddu: Q108K:K40L:T51V:T53C:R58Y:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V and irradiated with UV light at pH 3.0
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.599 Å
Deposited: 2024-08-28
Authors: Bingham, C., Geiger, J.H.
PDB entry 9ddv: Cryo-EM structure of the human P2X2 receptor in the apo closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-08-28
Authors: Westermann, F.G., Oken, A.C., Muller, C.E., Mansoor, S.E.
PDB entry 9ddw: Cryo-EM structure of the human P2X2 receptor in conformation I of the ATP-bound desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2024-08-28
Authors: Westermann, F.G., Oken, A.C., Muller, C.E., Mansoor, S.E.
PDB entry 9ddx: Cryo-EM structure of the human P2X2 receptor in conformation II of the ATP-bound desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2024-08-28
Authors: Westermann, F.G., Oken, A.C., Muller, C.E., Mansoor, S.E.
PDB entry 9ddy: The Crystal Structure of Geranyltranstransferase from Streptococcus pneumoniae TIGR4
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-08-28
Authors: Kim, Y., Tan, A., Endres, M., Tan, K., Joachimik, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9ddz: Crystal Structure of Neisseria meningitidis TonB C-terminus domain (globular domain)
Classification: MOTOR PROTEIN
Source organism: Neisseria meningitidis serogroup B
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2024-08-28
Authors: Dubey, S., Li, P., Noinaj, N.
PDB entry 9de1: Q108K:K40L:T51V:T53C:R58Y:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V in the dark at pH 6.0
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-08-28
Authors: Bingham, C., Geiger, J.H.
PDB entry 9de2: ETO2 MYND bound to MPPL peptide from GATAD2A
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-08-28
Authors: Williams, D.C.
PDB entry 9de3: Crystal structure of NDM-1 complexed with compound 28
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-08-28
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9de4: Er-Bound Structure of Computationally Designed Homotetramer PW1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-28
Authors: Hoffnagle, A.M., Tezcan, F.A.
PDB entry 9de5: Structure of full-length HIV TAR RNA bound to HIV Tat RNA-binding domain
Classification: RNA/TRANSCRIPTION
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-08-28
Authors: Bou-Nader, C., Zhang, J.
PDB entry 9de6: Structure of full-length HIV TAR RNA
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-08-28
Authors: Bou-Nader, C., Zhang, J.
PDB entry 9de7: Structure of full-length HIV TAR RNA G16A/A17G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-08-28
Authors: Bou-Nader, C., Zhang, J.
PDB entry 9de8: Structure of full-length HIV TAR RNA soaked in CaCl2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2024-08-28
Authors: Bou-Nader, C., Zhang, J.
PDB entry 9de9: Crystal Structure of HE-B11
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-08-28
Authors: Bera, A.K., Sims, J., Baker, D.
PDB entry 9dea: Crystal Structure of C3-threaded
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2024-08-28
Authors: Bera, A.K., Sims, J., Baker, D.
PDB entry 9deb: Crystal Structure of D3-threaded
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2024-08-28
Authors: Bera, A.K., Sims, J., Kang, A., Baker, D.
PDB entry 9dec: Crystal Structure of D9-threaded
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-08-28
Authors: Bera, A.K., Sims, J., Baker, D.