LiteFold/PDB huggingface dataset:
PDB entry 8dx9: [C:Hg2+/Ag+:C--pH 6.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.55 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxa: [C:Hg2+/Ag+:C--pH 7] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.21 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxb: HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-fluoroindole-2-carboxylic acid at the NNRTI Adjacent site
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxc: [C:Hg2+/Ag+:C--pH 7.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.04 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxd: [C:Hg2+/Ag+:C--pH 8] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.28 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxe: HIV-1 reverse transcriptase/rilpivirine with bound fragment 2-amino-6-fluorobenzonitrile at the NNRTI adjacent site
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxf: [C:Hg2+/Ag+:C--pH 9] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.29 Å
Deposited: 2022-08-02
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxg: HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-(trifluoromethyl)pyridin-2-ol at W24 site
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 BH10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxh: HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-fluoroquinazolin-4-ol at W266 site
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxi: HIV-1 reverse transcriptase/rilpivirine with bound fragment [1-(4-fluorophenyl)-5-methyl-1H-pyrazol-4-yl]methanol at multiple sites
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxj: HIV-1 reverse transcriptase/rilpivirine with bound fragment 1-N-methyl-4-(trifluoromethyl)benzene-1,2-diamine at the NNRTI adjacent site
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxk: HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-bromopyrazole at multiple sites
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus 1aHuman immunodeficiency virus type 1 group M subtype B (isolate BH10); Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxl: HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-iodopyrazole at multiple sites
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxm: HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-bromophenol at the Knuckles site
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-08-02
Authors: Chopra, A., Ruiz, F.X., Bauman, J.D., Arnold, E.
PDB entry 8dxn: Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-02
Authors: Takahashi, H., Yamada, T., Denton, J.S., Strange, K., Karakas, E.
PDB entry 8dxo: Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-02
Authors: Takahashi, H., Yamada, T., Denton, J.S., Strange, K., Karakas, E.
PDB entry 8dxp: Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 3
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-08-02
Authors: Takahashi, H., Yamada, T., Denton, J.S., Strange, K., Karakas, E.
PDB entry 8dxq: Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-02
Authors: Takahashi, H., Yamada, T., Denton, J.S., Strange, K., Karakas, E.
PDB entry 8dxr: Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 5
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-08-02
Authors: Takahashi, H., Yamada, T., Denton, J.S., Strange, K., Karakas, E.
PDB entry 8dxs: Cryo-EM structure of RBD-directed neutralizing antibody P2B4 in complex with prefusion SARS-CoV-2 spike glycoprotein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2022-08-03
Authors: Reddem, E.R., Shapiro, L.
PDB entry 8dxt: Fab arm of antibody GAR12 bound to the receptor binding domain of SARS-CoV-2.
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-08-03
Authors: Langley, D.B., Christ, D., Henry, J.Y.
PDB entry 8dxu: Fab arms of antibodies GAR03 and 10G4 bound to the receptor binding domain of SARS-CoV-2 in a 1:1:1 complex.
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.728 Å
Deposited: 2022-08-03
Authors: Langley, D.B., Christ, D.
PDB entry 8dxv: [T:Au+:T--(pH11-pH7; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 5s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.59 Å
Deposited: 2022-08-03
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxw: [T:Au+:T--(pH11-pH7; 15s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 15s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.52 Å
Deposited: 2022-08-03
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxx: [T:Au+:T--(pH11-pH7; 45s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 45s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.07 Å
Deposited: 2022-08-03
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxy: [T:Au+:T--(pH11-pH7; 180s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 180s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.87 Å
Deposited: 2022-08-03
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dxz: [T:Au+:T--(pH11-pH7; 420s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 420s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.71 Å
Deposited: 2022-08-03
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8dy0: Crystal Structure of spFv GLK1 HL
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-03
Authors: Luo, J., Boucher, L.E.
PDB entry 8dy1: Crystal Structure of scFv CAT2200 LH in complex with IL-17A
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2022-08-03
Authors: Luo, J., Armstrong, A.A.
PDB entry 8dy2: Crystal Structure of spFv GLK1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-08-03
Authors: Luo, J., Boucher, L.E.
PDB entry 8dy3: Crystal Structure of spFv GLK2 HL
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.509 Å
Deposited: 2022-08-03
Authors: Luo, J., Boucher, L.E.
PDB entry 8dy4: Crystal Structure of spFv CAT2200 HL
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-08-03
Authors: Luo, J., Boucher, L.E.
PDB entry 8dy5: Crystal Structure of spFv CAT2200 LH in complex with IL-17A
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-08-03
Authors: Luo, J., Boucher, L.E.
PDB entry 8dy6: Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.32 Å
Deposited: 2022-08-03
Authors: Stalls, V., Acharya, P.
PDB entry 8dy7: Streptomyces venezuelae RNAP transcription open promoter complex with WhiA and WhiB transcription factors
Classification: TRANSCRIPTION/TRANSFERASE/DNA
Source organism: Streptomyces venezuelae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-08-03
Authors: Lilic, M., Campbell, E.A.
PDB entry 8dy8: Crystal structure of the R178Q mutant of ubiquitin carboxy terminal hydrolase L1 (UCH-L1)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-03
Authors: Kenny, S., Brown, K.J., Das, C.
PDB entry 8dy9: Streptomyces venezuelae RNAP unconstrained open promoter complex with WhiA and WhiB transcription factors
Classification: TRANSCRIPTION/TRANSFERASE/DNA
Source organism: Streptomyces venezuelae; Streptomyces venezuelae ATCC 10712; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2022-08-03
Authors: Lilic, M., Campbell, E.A.
PDB entry 8dya: Structure of the SARS-CoV-2 spike glycoprotein S2 subunit
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2022-08-03
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 8dyb: The crystal structure of the T252A mutant of CYP199A4 bound to 4-methylthiobenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-08-03
Authors: Coleman, T., Bell, S.G.
PDB entry 8dyc: Human CYP3A4 bound to a substrate
Classification: OXIDOREDUCTASE/SUBSTRATE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-08-04
Authors: Sevrioukova, I.F.
PDB entry 8dyd: Crystal structure of human SDHA-SDHAF2-SDHAF4 assembly intermediate
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-08-04
Authors: Sharma, P., Maklashina, E., Cecchini, G., Iverson, T.M.
PDB entry 8dye: Crystal structure of human SDHA-SDHAF4 assembly intermediate
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2022-08-04
Authors: Sharma, P., Maklashina, E., Cecchini, G., Iverson, T.M.
PDB entry 8dyf: IL17A homodimer bound to Compound 10
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-08-04
Authors: Argiriadi, M.A., Goedken, E.R.
PDB entry 8dyg: IL17A homodimer bound to Compound 7
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2022-08-04
Authors: Argiriadi, M.A., Goedken, E.R.
PDB entry 8dyh: IL17A homodimer bound to Compound 6
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-08-04
Authors: Argiriadi, M.A., Goedken, E.R.
PDB entry 8dyi: IL17A homodimer bound to Compound 5
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2022-08-04
Authors: Argiriadi, M.A., Goedken, E.R.
PDB entry 8dyj: Crystal structure of human methylmalonyl-CoA mutase in complex with ADP and cob(II)alamin
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-08-04
Authors: Mascarenhas, R.N., Gouda, H., Banerjee, R.
PDB entry 8dyk: Room temperature neutron structure of a fluorescent Ag8 cluster templated by a multistranded DNA scaffold
Classification: DNA
Experimental method: NEUTRON DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-04
Authors: Meilleur, F., Lieberman, R.L., Petty, J.T.
PDB entry 8dyl: Crystal structure of human methylmalonyl-CoA mutase bound to aquocobalamin
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-08-04
Authors: Mascarenhas, R.N., Gouda, H., Banerjee, R.
PDB entry 8dym: Aspartimidylated Graspetide Amycolimiditide
Classification: UNKNOWN FUNCTION
Source organism: Amycolatopsis cihanbeyliensis
Experimental method: SOLUTION NMR
Deposited: 2022-08-04
Authors: Link, A.J., Choi, B.
PDB entry 8dyn: Antimicrobial lasso peptide cloacaenodin
Classification: ANTIBIOTIC
Source organism: Enterobacter hormaechei
Experimental method: SOLUTION NMR
Deposited: 2022-08-04
Authors: Carson, D.V., Link, A.J.
PDB entry 8dyo: Cryo-EM structure of Importin-4 bound to RanGTP
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2022-08-04
Authors: Bernardes, N.E., Fung, H.Y.J., Li, Y., Chen, Z., Chook, Y.M.
PDB entry 8dyp: Crystal structure of human cystine transporter cystinosin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-08-04
Authors: Guo, X., Feng, L.
PDB entry 8dyq: Crystal structure of Neisseria gonorrhoeae carbonic anhydrase with Acetazolamide
Classification: LYASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-08-04
Authors: Marapaka, A.K., Das, C., Flaherty, D.P., Yadav, R.
PDB entry 8dyr: BRD4-D1 in complex with BET inhibitor
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-08-04
Authors: Gorman, M.A., Fitzgerald, C.G.D., White, J.M., Parker, M.W.
PDB entry 8dys: Crystal structure of human Eukaryotic translation initiation factor 2A (eIF2A)
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-05
Authors: Righetto, G.L., Zeng, H., Dong, A., Li, Y., Hutchinson, A., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 8dyt: Cryo-EM structure of 227 Fab in complex with (NPNA)8 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-08-05
Authors: Martin, G.M., Ward, A.B.
PDB entry 8dyu: Structure of human cytoplasmic dynein-1 bound to two Lis1 proteins
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-08-05
Authors: Reimer, J.M., DeSantis, M., Reck-Peterson, S.L., Leschziner, A.E.
PDB entry 8dyv: Structure of human cytoplasmic dynein-1 bound to one Lis1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2022-08-05
Authors: Reimer, J.M., DeSantis, M., Reck-Peterson, S.L., Leschziner, A.E.
PDB entry 8dyw: Cryo-EM structure of 239 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2022-08-05
Authors: Martin, G.M., Ward, A.B.
PDB entry 8dyx: Cryo-EM structure of 311 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-08-05
Authors: Martin, G.M., Ward, A.B.
PDB entry 8dyy: Cryo-EM structure of 334 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2022-08-05
Authors: Martin, G.M., Ward, A.B.
PDB entry 8dyz: Hen lysozyme in tetragonal space group at ambient temperature - diffuse scattering dataset
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.272 Å
Deposited: 2022-08-05
Authors: Meisburger, S.P., Ando, N.
PDB entry 8dz0: Crystal Structure of SARS-CoV-2 Main protease in complex with Ensitrelvir
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-08-06
Authors: Noske, G.D., Oliva, G., Godoy, A.S.
PDB entry 8dz1: Crystal Structure of SARS-CoV-2 Main protease mutant M49I in complex with Ensitrelvir
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2022-08-06
Authors: Noske, G.D., Oliva, G., Godoy, A.S.
PDB entry 8dz2: Crystal Structure of SARS-CoV-2 Main protease in complex with Nirmatrelvir
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.129 Å
Deposited: 2022-08-06
Authors: Noske, G.D., Oliva, G., Godoy, A.S.
PDB entry 8dz3: Cryo-EM structure of 337 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-08-06
Authors: Martin, G.M., Ward, A.B.
PDB entry 8dz4: Cryo-EM structure of 356 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-06
Authors: Martin, G.M., Ward, A.B.
PDB entry 8dz5: Cryo-EM structure of 364 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2022-08-06
Authors: Martin, G.M., Ward, A.B.
PDB entry 8dz6: Crystal Structure of SARS-CoV-2 Main protease mutant Q189K in complex with Nirmatrelvir
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.366 Å
Deposited: 2022-08-06
Authors: Noske, G.D., Oliva, G., Godoy, A.S.
PDB entry 8dz7: Hen lysozyme in orthorhombic space group at ambient temperature - diffuse scattering dataset
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2022-08-06
Authors: Meisburger, S.P., Imran, S.M.S., Ando, N.
PDB entry 8dz8: Neoleukin 4, a de novo designed IL-4 mimetic
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.972 Å
Deposited: 2022-08-06
Authors: Jude, K.M., Spangler, J.B., Garcia, K.C.
PDB entry 8dz9: Crystal Structure of SARS-CoV-2 Main protease G143S mutant in complex with Nirmatrelvir
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.664 Å
Deposited: 2022-08-06
Authors: Noske, G.D., Oliva, G., Godoy, A.S.
PDB entry 8dza: Crystal Structure of SARS-CoV-2 Main protease A193T mutant in complex with Nirmatrelvir
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.961 Å
Deposited: 2022-08-06
Authors: Noske, G.D., Oliva, G., Godoy, A.S.
PDB entry 8dzb: Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor 11
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-08-06
Authors: Sacco, M., Chen, Y.
PDB entry 8dzc: Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor 17
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-08-06
Authors: Sacco, M., Chen, Y.
PDB entry 8dzd: Structure of MS3494 from Mycobacterium smegmatis bound to sucrose
Classification: UNKNOWN FUNCTION
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2022-08-06
Authors: Kent, J.E., Aleshin, A.E., Marassi, F.M.
PDB entry 8dze: Cryo-EM structure of bundle-forming pilus extension ATPase from E. coli in the presence of AMP-PNP (class-1)
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2022-08-07
Authors: Nayak, A.R., Zhao, J., Donnenberg, M.S., Samso, M.
PDB entry 8dzf: Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of AMP-PNP (class-2)
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2022-08-07
Authors: Nayak, A.R., Zhao, J., Donnenberg, M.S., Samso, M.
PDB entry 8dzg: Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of ADP
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-08-07
Authors: Nayak, A.R., Zhao, J., Donnenberg, M.S., Samso, M.
PDB entry 8dzh: Structure of SARS-CoV-2 Omicron BA.1.1.529 Spike trimer with two RBDs down in complex with the Fab fragment of human neutralizing antibody MB.02
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-07
Authors: Hu, Y., Xiong, Y.
PDB entry 8dzi: Structure of SARS-CoV-2 Omicron BA.1.1.529 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody MB.02
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-07
Authors: Hu, Y., Xiong, Y.
PDB entry 8dzj: Cryo-EM structure of Acidibacillus sulfuroxidans Cas12f in complex with sgRNA and target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Acidibacillus sulfuroxidans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-08-07
Authors: Liu, C., Zhao, M.
PDB entry 8dzk: Dbr1 in complex with 5-mer cleavage product
Classification: HYDROLASE/RNA
Source organism: Entamoeba histolytica; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-08
Authors: Clark, N.E., Taylor, A.B.
PDB entry 8dzl: Structure of the K39Q mutant of rat somatic Cytochrome c at 1.36A
Classification: ELECTRON TRANSPORT
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2022-08-08
Authors: Edwards, B.F.P., Huettemann, M., Vaishnav, A., Brunzelle, J., Morse, P., Wan, J.
PDB entry 8dzm: Crystal structure of human Sar1a in complex with ppGpp and Magnesium
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.648 Å
Deposited: 2022-08-08
Authors: Huang, Q.
PDB entry 8dzn: Crystal structure of human Sar1a in complex with GDP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.107 Å
Deposited: 2022-08-08
Authors: Huang, Q.
PDB entry 8dzo: Crystal structure of human Sar1T39N mutant
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-08
Authors: Huang, Q.
PDB entry 8dzp: momSalB bound Kappa Opioid Receptor in complex with Gi1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2022-08-08
Authors: Fay, J.F., Che, T.
PDB entry 8dzq: momSalB bound Kappa Opioid Receptor in complex with GoA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2022-08-08
Authors: Fay, J.F., Che, T.
PDB entry 8dzr: GR89,696 bound Kappa Opioid Receptor in complex with gustducin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2022-08-08
Authors: Fay, J.F., Che, T.
PDB entry 8dzs: GR89,696 bound Kappa Opioid Receptor in complex with Gz
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2022-08-08
Authors: Fay, J.F., Che, T.
PDB entry 8dzt: Crystal structure of human Sar1aH79G mutant
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-08
Authors: Huang, Q.
PDB entry 8dzu: Crystal structure of photoactive yellow protein (PYP); F96oCNF M100H construct
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2022-08-08
Authors: Kirsh, J.M., Weaver, J.B., Boxer, S.G.
PDB entry 8dzv: Chicken anti-cardiac Troponin I antibody in complex with peptide
Classification: PROTEIN BINDING
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-08-08
Authors: Conroy, P.J., Law, H.P.
PDB entry 8dzw: RSV F trimer bound to RSV-199 Fab
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus A2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2022-08-08
Authors: Wen, X., Jardetzky, T.S.
PDB entry 8dzx: Crystal structure of photoactive yellow protein (PYP); F96oCNF M100K construct
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2022-08-08
Authors: Kirsh, J.M., Weaver, J.B., Boxer, S.G.
PDB entry 8dzy: Crystal structure of photoactive yellow protein (PYP); F96oCNF I49T construct
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2022-08-08
Authors: Weaver, J.B., Kirsh, J.M., Boxer, S.G.
PDB entry 8dzz: Cryo-EM structure of chi dynein bound to Lis1
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-08-08
Authors: Reimer, J.M., Lahiri, I., Leschziner, A.E.
PDB entry 8e00: Symmetry expansion of yeast cytoplasmic dynein-1 bound to Lis1 in the chi conformation.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-08
Authors: Reimer, J.M., Lahiri, I., Leschziner, A.E.
PDB entry 8e01: Structure of engineered nano-cage fusion protein
Classification: PROTEIN BINDING
Source organism: Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-08
Authors: Moustafa, I.M., Hafenstein, S.L.
PDB entry 8e02: Crystal structure of photoactive yellow protein (PYP); F96oCNF T103V construct
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.09 Å
Deposited: 2022-08-08
Authors: Kirsh, J.M., Weaver, J.B., Boxer, S.G.
PDB entry 8e03: Crystal structure of photoactive yellow protein (PYP); F96oCNF M100D construct
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2022-08-08
Authors: Kirsh, J.M., Weaver, J.B., Boxer, S.G.
PDB entry 8e04: Structure of monomeric LRRK1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-08
Authors: Reimer, J.M., Mathea, S., Chatterjee, D., Knapp, S., Leschziner, A.E.
PDB entry 8e05: Structure of dimeric LRRK1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2022-08-08
Authors: Reimer, J.M., Lin, Y.X., Leschziner, A.E.
PDB entry 8e06: Symmetry expansion of dimeric LRRK1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-08-08
Authors: Reimer, J.M., Lin, Y.X., Leschziner, A.E.
PDB entry 8e07: Crystal structure of HPSE P6 in complex with triose pentosan inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-08
Authors: Whitefield, C., Jackson, C.J.
PDB entry 8e08: Crystal structure of HPSE P6 in complex with tetraose pentosan inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-08-08
Authors: Whitefield, C., Jackson, C.J.
PDB entry 8e09: Crystal structure of photoactive yellow protein (PYP); F96oCNF M100E construct
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2022-08-08
Authors: Kirsh, J.M., Weaver, J.B., Boxer, S.G.
PDB entry 8e0a: Crystal structure of human Sar1b
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.797 Å
Deposited: 2022-08-08
Authors: Huang, Q.
PDB entry 8e0b: Crystal structure of human Sar1bT39N
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.212 Å
Deposited: 2022-08-08
Authors: Huang, Q.
PDB entry 8e0c: Crystal structure of human Sar1bH79G
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.993 Å
Deposited: 2022-08-08
Authors: Huang, Q.
PDB entry 8e0d: Crystal structure of human Sar1bE140D
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.981 Å
Deposited: 2022-08-08
Authors: Huang, Q.
PDB entry 8e0e: nbF3:CaV beta subunit 2a complex
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Lama glama; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-09
Authors: Nirwan, N., Minor, D.L.
PDB entry 8e0f: Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing a G-G pair adjacent to the target site
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-08-09
Authors: Wilcox, X.E., Fisher, A.J., Beal, P.A.
PDB entry 8e0g: Re-refined model of active mu-opioid receptor (PDB 5c1m) as an adduct with BU72
Classification: SIGNALING PROTEIN/AGONIST
Source organism: Lama glama; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-09
Authors: Munro, T.A.
PDB entry 8e0h: Crystal structure of human Sar1aD104/D140A double mutant
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-09
Authors: Huang, Q.
PDB entry 8e0l: Homotrimeric variant of tcTRP9, BGL06
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-09
Authors: Kennedy, M.A., Kibler, R., Stoddard, B.L.
PDB entry 8e0m: Homotrimeric variant of tcTRP9, BGL15
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2022-08-09
Authors: Kibler, R., Stoddard, B.L., Kennedy, M.A.
PDB entry 8e0n: Homotrimeric variant of tcTRP9, BGL18
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-08-09
Authors: Kibler, R., Stoddard, B.L., Kennedy, M.A.
PDB entry 8e0o: Heterotrimeric variant of tcTRP9, hetBGL03-15-18
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-09
Authors: Kibler, R., Stoddard, B.L., Kennedy, M.A.
PDB entry 8e0p: Crystal structure of mouse APCDD1 in fusion with engineered MBP
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2022-08-09
Authors: Hsieh, F.L., Chang, T.H., Gabelli, S.B., Nathans, J.
PDB entry 8e0q: Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a C2 symmetric dimeric form
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2022-08-09
Authors: Wang, F., He, Q., Lin, G., Li, H.
PDB entry 8e0r: Crystal structure of mouse APCDD1 in P21 space group
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-08-09
Authors: Hsieh, F.L., Chang, T.H., Gabelli, S.B., Nathans, J.
PDB entry 8e0s: DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase complexed with DAHP Oxime in unbound:(bound)2:unbound conformations
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-08-09
Authors: Berti, P.J., Junop, M.S., Grainger, R.
PDB entry 8e0t: DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase complexed with DAHP Oxime in unbound:(bound)2:other conformations
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-08-09
Authors: Berti, P.J., Junop, M.S., Grainger, R.
PDB entry 8e0u: DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase complexed with Sulfate in unbound:(bound)2:other conformations
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-08-09
Authors: Berti, P.J., Junop, M.S., Grainger, R.
PDB entry 8e0v: DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase complexed with Mn(II), PEP, and Pi in unbound:(bound)2:other Conformations
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-09
Authors: Berti, P.J., Junop, M.S., Grainger, R.
PDB entry 8e0w: Crystal structure of mouse APCDD1 in P1 space group
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-08-09
Authors: Hsieh, F.L., Chang, T.H., Gabelli, S.B., Nathans, J.
PDB entry 8e0x: DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase complexed with Mn(II), PEP, and Pi in unbound:(bound)2:other Conformations
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-08-09
Authors: Berti, P.J., Junop, M.S., Grainger, R.
PDB entry 8e0y: DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase complexed with DAHP oxime, Pr(III), and Pi in unbound:(bound)2:other Conformations
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2022-08-09
Authors: Berti, P.J., Junop, M.S., Grainger, R.
PDB entry 8e0z: DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase unbound:(bound)2:unbound Conformations
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-08-09
Authors: Berti, P.J., Junop, M.S., Grainger, R.
PDB entry 8e10: Structure of mouse polymerase beta
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-08-09
Authors: Thompson, M.K., Sharma, N., Prakash, A.
PDB entry 8e11: Structure of mouse DNA polymerase Beta (PolB) mutant
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-09
Authors: Sharma, N., Thompson, M.K., Prakash, A.
PDB entry 8e12: Homotrimeric variant of tcTRP9, BGL14
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-08-09
Authors: Kibler, R., Stoddard, B.L., Kennedy, M.A.
PDB entry 8e13: Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2022-08-09
Authors: Li, L., Bouvier, M.
PDB entry 8e14: Cryo-EM structure of Rous sarcoma virus strand transfer complex
Classification: VIRAL PROTEIN/DNA
Source organism: Rous sarcoma virus - Prague C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-08-09
Authors: Pandey, K.K., Bera, S., Shi, K., Aihara, H., Grandgenett, D.P.
PDB entry 8e15: A computationally stabilized hMPV F protein
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T2; Human metapneumovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2022-08-09
Authors: Huang, J., Gonzalez, K., Mousa, J., Strauch, E.
PDB entry 8e16: Mycobacterium phage Che8
Classification: VIRUS
Source organism: Mycobacterium virus Che8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-08-09
Authors: Podgorski, J.M., White, S.J.
PDB entry 8e17: BRD4-D1 in complex with BET inhibitor
Classification: GENE REGULATION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-08-09
Authors: Gorman, M.A., Fitzgerald, C.G.D., White, J.M., Parker, M.W.
PDB entry 8e18: Crystal structure of apo TnmK1
Classification: HYDROLASE
Source organism: Streptomyces sp. CB03234
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2022-08-10
Authors: Liu, Y.-C., Gui, C., Shen, B.
PDB entry 8e19: Crystal structure of TnmK1 complexed with TNM H
Classification: HYDROLASE
Source organism: Streptomyces sp. CB03234
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2022-08-10
Authors: Liu, Y.-C., Gui, C., Shen, B.
PDB entry 8e1a: Structure-based study to overcome cross-reactivity of novel androgen receptor inhibitors
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-08-10
Authors: Lallous, N., Li, H., Radaeva, M., Dalal, K., Leblanc, E., Ban, F., Ciesielski, F., Chow, B., Morin, M., Singh, K., Rennie, P.S., Cherkasov, A.
PDB entry 8e1b: Crystal Structure of Nanobody VHH108 Specific for PA14 Cif
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-08-10
Authors: Simard, A.R., Taher, N.M., Mishra, A.K., Madden, D.R.
PDB entry 8e1c: Crystal Structure of Nanobody VHH222 Specific for PA14 Cif
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-08-10
Authors: Simard, A.R., Taher, N.M., Balsam, S.S., Madden, D.R.
PDB entry 8e1d: NMR-derived ensemble of the TAZ2 domain of p300 bound to the microphthalmia-associated transcription factor
Classification: TRANSCRIPTION/TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2022-08-10
Authors: Langelaan, D.N., Branch, M.
PDB entry 8e1e: Scaffolding protein functional sites using deep learning
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 4.27 Å
Deposited: 2022-08-10
Authors: Bera, A.K., Gerben, S., Baker, D.
PDB entry 8e1f: Sterile Alpha Motif Domain of Human Translocation ETS Leukemia, Non-Polymer Crystal Form
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2022-08-10
Authors: Wilson, E., Nawarathnage, S., Stewart, C., Brown, S., Bezzant, B., Bunn, D., Towne, N., Pedroza Romo, M.J., Moody, J.D.
PDB entry 8e1g: SARS-CoV-2 RBD in complex with Omicron-neutralizing antibody 2A10
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2022-08-10
Authors: Wasserman, H., Hastie, K.M., Buck, T.K., Saphire, E.O.
PDB entry 8e1h: Asp1 kinase in complex with ADP Mg 5-IP7
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-08-10
Authors: Goldgur, Y., Shuman, S., Benjamin, B.
PDB entry 8e1i: Asp1 kinase in complex with ATP Mg 5-IP7
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe/Puccinia graminis mixed DNA library
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-10
Authors: Goldgur, Y., Shuman, S., Benjamin, B.
PDB entry 8e1j: Asp1 kinase in complex with 1,5-IP8
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-08-10
Authors: Goldgur, Y., Shuman, S., Benjamin, B.
PDB entry 8e1k: Crystal structure of photoactive yellow protein (PYP); F96oCNF M100Q construct
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2022-08-10
Authors: Kirsh, J.M., Weaver, J.B., Boxer, S.G.
PDB entry 8e1l: Crystal structure of photoactive yellow protein (PYP); F96oCNF M100N construct
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-08-10
Authors: Kirsh, J.M., Weaver, J.B., Boxer, S.G.
PDB entry 8e1m: Cryo-EM structure of the endogenous core TIM23 complex from S. cerevisiae
Classification: TRANSLOCASE/IMMUNE SYSTEM
Source organism: Mus musculus; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-08-10
Authors: Sim, S.I., Park, E.
PDB entry 8e1o: Crystal structure of hTEAD2 bound to a methoxypyridine lipid pocket binder
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-08-10
Authors: Noland, C.L., Dey, A., Zbieg, J., Crawford, J.
PDB entry 8e1p: Crystal structure of BG505 SOSIP.v4.1-GT1.2 trimer in complex with gl-PGV20 and PGT124 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.82 Å
Deposited: 2022-08-11
Authors: Sarkar, A., Kumar, S., Wilson, I.A.
PDB entry 8e1q: The crystal structure of the I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023044
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Luxembourg/43/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-11
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 8e1s: Asp1 kinase in complex with ADPNP Mn IP6
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-08-11
Authors: Goldgur, Y., Shuman, S., Benjamin, B.
PDB entry 8e1t: Asp1 kinase in complex with ADPNP Mg IP7
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-08-11
Authors: Goldgur, Y., Shuman, S., Benjamin, B.
PDB entry 8e1u: Propionibacterium freudenreichii PPi-dependent PEPCK in complex with malate
Classification: LYASE
Source organism: Propionibacterium freudenreichii subsp. shermanii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-08-11
Authors: McLeod, M.J., Holyoak, T.
PDB entry 8e1v: Asp1 kinase in complex with ADPNP Mg IP6
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-08-11
Authors: Goldgur, Y., Shuman, S., Benjamin, B.
PDB entry 8e1w: Neutron crystal structure of Panus similis AA9A at room temperature
Classification: OXIDOREDUCTASE
Source organism: Panus similis
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2022-08-11
Authors: Meilleur, F., Tandrup, T., Lo Leggio, L.
PDB entry 8e1x: FGFR2 kinase domain in complex with a Pyrazolo[1,5-a]pyrimidine analog (Compound 29)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2022-08-11
Authors: Lei, H.-T., Epling, L.B., Deller, M.C.
PDB entry 8e1y: Crystal Structure of SARS-CoV-2 Main protease A193S mutant in complex with Nirmatrelvir
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2022-08-11
Authors: Noske, G.D., Oliva, G., Godoy, A.S.
PDB entry 8e1z: Crystal structure of Plasmodium falciparum ookinete surface antigen Pfs28
Classification: CELL ADHESION
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-12
Authors: Shukla, N., Tang, W.K., Tolia, N.H.