LiteFold/PDB huggingface dataset:
PDB entry 8bb3: Structure of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC with PEG linker (conformation #1)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-10-12
Authors: Kraemer, A., Doelle, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8bb4: Structure of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC with C3 linker
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-10-12
Authors: Kraemer, A., Doelle, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8bb5: Structure of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC with Aryl linker
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-12
Authors: Kraemer, A., Doelle, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8bb6: Crystal structure of Arabidopsis thaliana sucrose transporter SUC1
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2022-10-12
Authors: Bavnhoej, L., Pedersen, B.P.
PDB entry 8bb7: Crystal structure of Mouse Plexin-B1 (20-535) in complex with VHH15
Classification: SIGNALING PROTEIN
Source organism: Camelidae; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2022-10-12
Authors: Cowan, R., Hall, G., Carr, M.
PDB entry 8bb8: Crystal structure of human aldehyde dehydrogenase ALDH3A1 in complex with octanal
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-10-12
Authors: Schwartz, M., Neiers, F.
PDB entry 8bb9: IPNS H270N variant in complex with Fe and ACV after O2 exposure
Classification: OXIDOREDUCTASE
Source organism: Aspergillus nidulans FGSC A4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2022-10-12
Authors: Rabe, P., Schofield, C.J.
PDB entry 8bba: IPNS H270N variant in complex with Fe and ACV under anaerobic conditions
Classification: OXIDOREDUCTASE
Source organism: Aspergillus nidulans FGSC A4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-10-12
Authors: Rabe, P., Schofield, C.J.
PDB entry 8bbb: IPNS H270A variant in complex with ACV exposed to O2
Classification: OXIDOREDUCTASE
Source organism: Aspergillus nidulans FGSC A4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-10-12
Authors: Rabe, P., Schofield, C.J.
PDB entry 8bbc: IPNS H270A variant in complex with Fe and ACV under anaerobic conditions
Classification: OXIDOREDUCTASE
Source organism: Aspergillus nidulans FGSC A4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-10-12
Authors: Rabe, P., Schofield, C.J.
PDB entry 8bbd: IPNS H270Q variant in complex with ACV after O2 exposure
Classification: OXIDOREDUCTASE
Source organism: Aspergillus nidulans FGSC A4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-10-12
Authors: Rabe, P., Schofield, C.J.
PDB entry 8bbe: Structure of the IFT-A complex; IFT-A2 module
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-10-12
Authors: Hesketh, S.J., Mukhopadhyay, A.G., Nakamura, D., Toropova, K., Roberts, A.J.
PDB entry 8bbf: Structure of the IFT-A complex; IFT-A1 module
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2022-10-12
Authors: Hesketh, S.J., Mukhopadhyay, A.G., Nakamura, D., Toropova, K., Roberts, A.J.
PDB entry 8bbg: Structure of the IFT-A complex; anterograde IFT-A train model
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-10-12
Authors: Hesketh, S.J., Mukhopadhyay, A.G., Nakamura, D., Toropova, K., Roberts, A.J.
PDB entry 8bbh: The crystal structure of a mouse Fab fragment TL1 in complex with a human Glucose-6-phosphate isomerase peptide 293-307
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.619 Å
Deposited: 2022-10-13
Authors: Ge, C., Holmdahl, R., Li, T.
PDB entry 8bbi: Crystal structure of Xyn11 double mutant L271S, K275H from Psedothermotoga thermarum
Classification: HYDROLASE
Source organism: Pseudothermotoga thermarum DSM 5069
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-10-13
Authors: Cea-Rama, I., Sanz-Aparicio, J.
PDB entry 8bbj: Secretagogin (mouse) in complex with its target peptide from Syntaxin-4
Classification: PEPTIDE BINDING PROTEIN
Source organism: Aequorea victoria; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-10-13
Authors: Schnell, R., Szodorai, E.
PDB entry 8bbk: Crystal structure of human Sirt3 in complex with a fragment of the human AROS protein
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.27 Å
Deposited: 2022-10-13
Authors: Steegborn, C., Weiss, S.
PDB entry 8bbl: SGL a GH20 family sulfoglycosidase
Classification: HYDROLASE
Source organism: Prevotella
Experimental method: X-RAY DIFFRACTION
Resolution: 2.711 Å
Deposited: 2022-10-13
Authors: Dong, M.D., Roth, C.R., Jin, Y.J.
PDB entry 8bbm: DNA binding domain of J-DNA Binding Protein 1 (JBP1)
Classification: OXIDOREDUCTASE
Source organism: Leishmania tarentolae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-10-13
Authors: de Vries, I., Joosten, R.P., Perrakis, A.
PDB entry 8bbn: SARS-CoV-2 Delta-RBD complexed with BA.2-10 and EY6A Fabs
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.58 Å
Deposited: 2022-10-14
Authors: Zhou, D., Ren, J., Stuart, D.I.
PDB entry 8bbo: SARS-CoV-2 Delta-RBD complexed with BA.2-36 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2022-10-14
Authors: Zhou, D., Ren, J., Stuart, D.I.
PDB entry 8bbp: Crystal structure of feruloyl esterase wtsFae1B
Classification: RECOMBINATION
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.07 Å
Deposited: 2022-10-14
Authors: Wilkens, C.
PDB entry 8bbq: Determination of the structure of active tyrosinase from bacterium Verrucomicrobium spinosum
Classification: METAL BINDING PROTEIN
Source organism: Verrucomicrobium spinosum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2022-10-14
Authors: Fekry, M., Dave, K., Badgujar, D., Aurelius, O., Hamnevik, E., Dobritzsch, D., Danielson, H.
PDB entry 8bbr: Determination of the structure of active tyrosinase from bacterium Verrucomicrobium spinosum
Classification: METAL BINDING PROTEIN
Source organism: Verrucomicrobium spinosum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2022-10-14
Authors: Fekry, M., Dave, K., Badgujar, D., Aurelius, O., Hamnevik, E., Dobritzsch, D., Danielson, H.
PDB entry 8bbs: Structure of AKR1C3 in complex with a bile acid fused tetrazole inhibitor
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-10-14
Authors: Petri, E.T., Skerlova, J., Marinovic, M., Brynda, J., Kugler, M., Skoric, D., Bekic, S., Celic, A.S., Rezacova, P.
PDB entry 8bbt: Native Tipula oleracea Nudivirus polyhedrin - 1960
Classification: VIRAL PROTEIN
Source organism: Tipula oleracea nudivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2022-10-14
Authors: Keown, J.R., Grimes, J.M.
PDB entry 8bbu: Crystal structure of medical leech destabilase (high salt)
Classification: HYDROLASE
Source organism: Hirudo medicinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-10-14
Authors: Marin, E., Bukhdruker, S., Manuvera, V., Kornilov, D., Zinovev, E., Bobrovsky, P., Lazarev, V., Borshchevskiy, V.
PDB entry 8bbv: Coproporphyrin III - LmCpfC complex soaked 2min with Fe2+
Classification: METAL BINDING PROTEIN
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-10-14
Authors: Gabler, T., Hofbauer, S.
PDB entry 8bbw: Crystal structure of medical leech destabilase (low salt)
Classification: HYDROLASE
Source organism: Hirudo medicinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-10-14
Authors: Marin, E., Bukhdruker, S., Manuvera, V., Kornilov, D., Zinovev, E., Bobrovsky, P., Lazarev, V., Borshchevskiy, V.
PDB entry 8bbx: Structure of prolyl endoprotease from Aspergillus niger CBS 109712 in space group C222(1)
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-10-14
Authors: Pijning, T., Vujicic-Zagar, A., Van der Laan, J.M., De Jong, R.M., Dijkstra, B.W.
PDB entry 8bby: VarB H/L (SLPL/SLPH) complex from C. difficile SlpA (R20291 strain)
Classification: STRUCTURAL PROTEIN
Source organism: Clostridioides difficile R20291
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-10-14
Authors: Barwinska-Sendra, A., Salgado, P.S.
PDB entry 8bbz: Crystal Structure of SilF (apo form)
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-14
Authors: Lithgo, R.M., Carr, S.B., Quigley, A.M., Scott, D.J.
PDB entry 8bc0: Cryo-EM structure of Ca2+-bound mTMEM16F F518A Q623A mutant in GDN open/closed
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-10-14
Authors: Arndt, M., Alvadia, C., Straub, M., Clerico-Mosina, V., Paulino, C., Dutzler, R.
PDB entry 8bc1: Cryo-EM Structure of Ca2+-bound mTMEM16F F518A_Q623A mutant in GDN
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2022-10-14
Authors: Arndt, M., Alvadia, C., Straub, M.S., Clerico-Mosina, V., Paulino, C., Dutzler, R.
PDB entry 8bc2: Ligand-Free Structure of the decameric sulfofructose transaldolase BmSF-TAL
Classification: TRANSFERASE
Source organism: Bacillus aryabhattai
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-10-14
Authors: Snow, A.J.D., Sharma, M., Blaza, J., Davies, G.J.
PDB entry 8bc3: Cryo-EM Structure of a BmSF-TAL - Sulfofructose Schiff Base Complex
Classification: TRANSFERASE
Source organism: Bacillus aryabhattai
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2022-10-14
Authors: Snow, A.J.D., Sharma, M., Blaza, J., Davies, G.J.
PDB entry 8bc4: Cryo-EM Structure of a BmSF-TAL - Sulfofructose Schiff Base Complex in symmetry group C1
Classification: TRANSFERASE
Source organism: Bacillus aryabhattai
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-10-14
Authors: Snow, A.J.D., Sharma, M., Blaza, J., Davies, G.J.
PDB entry 8bc5: Recombinant Tipula oleracea Nudivirus Polyhedrin - Selenomethionine
Classification: VIRAL PROTEIN
Source organism: Tipula oleracea nudivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-10-15
Authors: Keown, J.R., Grimes, J.M.
PDB entry 8bc6: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex an aspartimide degron peptide
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-10-15
Authors: Heim, C., Hartmann, M.D.
PDB entry 8bc7: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex an aminoglutarimide degron peptide
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.719 Å
Deposited: 2022-10-15
Authors: Heim, C., Albrecht, R., Spring, A.K., Hartmann, M.D.
PDB entry 8bc8: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 18
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bc9: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 24
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bca: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 26
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bcb: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 34
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bcc: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 39
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bcd: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 50
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bce: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 76
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bcf: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 78
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bcg: Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 86
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bch: Human Brr2 Helicase Region in complex with Sulfaguanidine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2022-10-15
Authors: Vester, K., Loll, B., Wahl, M.C.
PDB entry 8bci: Crystal structure of short-chain dehydrogenase PA3128 from Pseudomonas aeruginosa PAO1
Classification: UNKNOWN FUNCTION
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-16
Authors: Popp, M.A., Vit, A., Blankenfeldt, W.
PDB entry 8bcj: Crystal structure of short-chain dehydrogenase PA3128 from Pseudomonas aeruginosa PAO1 in complex with NADP+
Classification: UNKNOWN FUNCTION
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2022-10-16
Authors: Popp, M.A., Vit, A., Blankenfeldt, W.
PDB entry 8bck: Recombinant Tipula oleracea Nudivirus polyhedrin
Classification: VIRAL PROTEIN
Source organism: Tipula oleracea nudivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2022-10-16
Authors: Keown, J.R., Grimes, J.M.
PDB entry 8bcl: Recombinant Tipula oleracea Nudivirus polyhedrin Expanded unit cell
Classification: VIRAL PROTEIN
Source organism: Tipula oleracea nudivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-10-16
Authors: Keown, J.R., Grimes, J.M.
PDB entry 8bcm: Structure of Synechococcus elongatus PCC 7942 Rubisco recombinantly expressed from E.coli
Classification: BIOSYNTHETIC PROTEIN
Source organism: Synechococcus elongatus PCC 7942 = FACHB-805
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.15 Å
Deposited: 2022-10-17
Authors: Ni, T., Sun, Y., Liu, L.N., Zhang, P.
PDB entry 8bcp: Cryo-EM structure of the proximal end of bacteriophage T5 tail : p142 tail terminator protein hexamer and pb6 tail tube protein trimer
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2022-10-17
Authors: Linares, R., Effantin, G., Breyton, C.
PDB entry 8bcq: N-terminal domain of Plasmodium berghei glutamyl-tRNA synthetase (native crystal structure)
Classification: RNA BINDING PROTEIN
Source organism: Plasmodium berghei ANKA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-10-17
Authors: Benas, P., Jaramillo Ponce, J.R., Frugier, M., Sauter, C.
PDB entry 8bcr: DENV3 Methyltransferase in complexed with AT-9010 and SAH
Classification: VIRAL PROTEIN
Source organism: Dengue virus type 3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-10-17
Authors: Gauffre, P., Fattorini, V., Canard, B., Ferron, F.
PDB entry 8bcs: X-ray crystal structure of a de novo designed helix-loop-helix homodimer in an anti arrangement, CC-HP1.0
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-10-17
Authors: Edgell, C.L., Mylemans, B., Naudin, E.A., Smith, A.J., Savery, N.J., Woolfson, D.N.
PDB entry 8bct: X-ray crystal structure of a de novo selected helix-loop-helix heterodimer in a syn arrangement, 26alpha/26beta
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-17
Authors: Naudin, E.A., Mylemans, B., Smith, A.J., Savery, N.J., Woolfson, D.N.
PDB entry 8bcu: Cryo-EM structure of the proximal end of bacteriophage T5 tail, after interaction with its receptor : p142 tail terminator protein hexamer and pb6 tail tube protein trimer
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T5
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2022-10-17
Authors: Linares, R., Effantin, G., Breyton, C.
PDB entry 8bcv: Photosystem I assembly intermediate of Avena sativa
Classification: PHOTOSYNTHESIS
Source organism: Avena sativa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-10-17
Authors: Naschberger, A., Amunts, A., Nelson, N.
PDB entry 8bcw: Photosystem I assembly intermediate of Avena sativa
Classification: PHOTOSYNTHESIS
Source organism: Avena sativa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Deposited: 2022-10-17
Authors: Naschberger, A., Amunts, A., Nelson, N.
PDB entry 8bcx: Crystal structure of NrfA-1 from Geobacter metallireducens
Classification: OXIDOREDUCTASE
Source organism: Geobacter metallireducens GS-15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.941 Å
Deposited: 2022-10-17
Authors: Denkhaus, L., Siffert, F., Einsle, O.
PDB entry 8bcy: HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 13
Classification: TRANSFERASE
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2022-10-17
Authors: Pala, D., Mazzucato, R., Capelli, A.M., Rancati, F., Biagetti, M.
PDB entry 8bcz: SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-10-17
Authors: Duyvesteyn, H.M.E., Ren, J., Stuart, D.I.
PDB entry 8bd0: Human Gamma-D crystallin R36S mutant with DTT-Cystein Protein modification
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-10-17
Authors: Yorke, B.A., Hill, J.A.
PDB entry 8bd1: Crystal structure of the RhsPWHH-RhsPI toxin-immunity pair
Classification: TOXIN
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2022-10-18
Authors: Chao, W.C.H., Wu, H.W., Li, H.
PDB entry 8bd2: Calcium-bound Calmodulin variant G113R
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2022-10-18
Authors: Wimmer, R., Holler, C.V., Petersson, N.M., Iwai, H., Niemelae, M.A., Brohus, M., Overgaard, M.T.
PDB entry 8bd3: Cryo-EM structure of the Photosystem II - LHCII supercomplex from Chlorella ohadi
Classification: PHOTOSYNTHESIS
Source organism: Chlorella ohadii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2022-10-18
Authors: Fadeeva, M., Klaiman, D., Caspy, I., Nelson, N.
PDB entry 8bd4: TniQ-capped Tns-ATP-dsDNA complex
Classification: DNA BINDING PROTEIN
Source organism: Scytonema hofmannii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2022-10-18
Authors: Querques, I., Schmitz, M., Oberli, S., Chanez, C., Jinek, M.
PDB entry 8bd5: Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli K-12; Scytonema hofmannii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-10-18
Authors: Schmitz, M., Querques, I., Oberli, S., Chanez, C., Jinek, M.
PDB entry 8bd6: Cas12k-sgRNA-dsDNA-TnsC non-productive complex.
Classification: RNA BINDING PROTEIN
Source organism: Scytonema hofmannii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-10-18
Authors: Schmitz, M., Querques, I., Oberli, S., Chanez, C., Jinek, M.
PDB entry 8bd7: IFTB1 subcomplex of anterograde Intraflagellar transport trains (Chlamydomonas reinhardtii)
Classification: PROTEIN TRANSPORT
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.9 Å
Deposited: 2022-10-18
Authors: Lacey, S.E., Foster, H.E., Pigino, G.
PDB entry 8bd8: Crystal structure of TRIM33 alpha PHD-Bromo domain in complex with 8
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-10-18
Authors: Tassone, G., Pozzi, C., Palomba, T.
PDB entry 8bd9: Crystal structure of TRIM33 alpha PHD-Bromo domain in complex with 10
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-10-18
Authors: Tassone, G., Pozzi, C., Palomba, T.
PDB entry 8bda: IFTA complex in anterograde intraflagellar transport trains (Chlamydomonas reinhardtii)
Classification: PROTEIN TRANSPORT
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 20.7 Å
Deposited: 2022-10-18
Authors: Lacey, S.E., Foster, H.E., Pigino, G.
PDB entry 8bdb: Ribulose-1,5-bisphosphate carboxylase/oxygenase from Griffithsia monilis
Classification: PHOTOSYNTHESIS
Source organism: Griffithsia monilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-19
Authors: Andersson, I., Gunn, L.H.
PDB entry 8bdc: Human apo TRPM8 in a closed state (composite map)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2022-10-19
Authors: Palchevskyi, S., Czarnocki-Cieciura, M., Vistoli, G., Gervasoni, S., Nowak, E., Beccari, A.R., Nowotny, M., Talarico, C.
PDB entry 8bdd: Crystal structure of Bacteroides ovatus CP926 PL17 alginate lyase
Classification: LYASE
Source organism: Bacteroides ovatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2022-10-19
Authors: Roenne, M.E., Tandrup, T., Wilkens, C.
PDB entry 8bde: Tubulin-baccatin III complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.902 Å
Deposited: 2022-10-19
Authors: Prota, A.E., Lucena-Agell, D., Ma, Y., Estevez-Gallego, J., Li, S., Bargsten, K., Altmann, K.H., Gaillard, N., Kamimura, S., Muehlethaler, T., Gago, F., Oliva, M.A., Steinmetz, M.O., Fang, W.S., Diaz, J.F.
PDB entry 8bdf: Tubulin-taxane-2a complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-10-19
Authors: Prota, A.E., Lucena-Agell, D., Ma, Y., Estevez-Gallego, J., Li, S., Bargsten, K., Altmann, K.H., Gaillard, N., Kamimura, S., Muehlethaler, T., Gago, F., Oliva, M.A., Steinmetz, M.O., Fang, W.S., Diaz, J.F.
PDB entry 8bdg: Tubulin-taxane-2b complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-10-19
Authors: Prota, A.E., Lucena-Agell, D., Ma, Y., Estevez-Gallego, J., Li, S., Bargsten, K., Altmann, K.H., Gaillard, N., Kamimura, S., Muehlethaler, T., Gago, F., Oliva, M.A., Steinmetz, M.O., Fang, W.S., Diaz, J.F.
PDB entry 8bdi: VCB in complex with compound 32
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.108 Å
Deposited: 2022-10-19
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bdj: VCB in complex with compound 30
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-10-19
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bdk: Structure of a non-canonical histone from archaea
Classification: DNA BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-10-19
Authors: Ofer, S., Werner, F.
PDB entry 8bdl: VCB in complex with compound 27
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.295 Å
Deposited: 2022-10-19
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bdm: VCB in complex with compound 26
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.021 Å
Deposited: 2022-10-19
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bdn: VCB in complex with compound 23
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2022-10-19
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bdo: VCB in complex with compound 21
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-10-19
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bdp: A GH20 family sulfoglycosidase Bt4394 in complex with NAG-thiazoline and sulfite
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-10-19
Authors: Zhang, Z., He, Y., Jin, Y.
PDB entry 8bdq: Crystal structure of Bacteroides ovatus CP926 PL38 alginate lyase
Classification: LYASE
Source organism: Bacteroides ovatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2022-10-19
Authors: Roenne, M.E., Tandrup, T., Wilkens, C.
PDB entry 8bdr: Early transcription elongation state of influenza B/Mem polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the U +1 position
Classification: VIRAL PROTEIN
Source organism: Influenza B virus (B/Memphis/13/2003); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-10-19
Authors: Cusack, S., Kouba, T.
PDB entry 8bds: Ternary complex between VCB, BRD4-BD1 and PROTAC 48
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-10-20
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bdt: Ternary complex between VCB, BRD4-BD2 and PROTAC 51
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-10-20
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.A.
PDB entry 8bdu: H33 variant of DoBi scaffold based on PIH1D1 N-terminal domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.471 Å
Deposited: 2022-10-20
Authors: Kolenko, P., Mikulecky, P., Pham, P.N., Schneider, B.
PDB entry 8bdv: Ribosome maturation factor P (RimP) from Staphylococcus aureus
Classification: TRANSLATION
Source organism: Staphylococcus aureus
Experimental method: SOLUTION NMR
Deposited: 2022-10-20
Authors: Garaeva, N., Usachev, K.
PDB entry 8bdw: Crystal structure of CnaB2 domain from Lactobacillus plantarum
Classification: PEPTIDE BINDING PROTEIN
Source organism: Lactiplantibacillus plantarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2022-10-20
Authors: Taberman, H., Hakanpaa, J., Linder, M.B., Aranko, A.S.
PDB entry 8bdx: Ternary complex between VCB, BRD4-BD2 and PROTAC 48
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2022-10-20
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bdy: Crystal structure of TRIM33 alpha PHD-Bromo domain in complex with 9
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2022-10-20
Authors: Tassone, G., Pozzi, C., Palomba, T.
PDB entry 8bdz: Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=4 topology
Classification: VIRUS LIKE PARTICLE
Source organism: Hepatitis B virus adw/991; Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979); Influenza A virus (A/Malaya/302/1954(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-10-20
Authors: Egorov, V.V., Shvetsov, A.V., Pichkur, E.B., Shaldzhyan, A.A., Zabrodskaya, Y.A., Vinogradova, D.S., Nekrasov, P.A., Gorshkov, A.N., Garmay, Y.P., Kovaleva, A.A., Stepanova, L.A., Tsybalova, L.M., Shtam, T.A., Myasnikov, A.G., Konevega, A.L.
PDB entry 8be0: Early transcription elongation state of influenza B/Mem polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the C +1 position
Classification: VIRAL PROTEIN
Source organism: Influenza B virus (B/Memphis/13/2003); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.34 Å
Deposited: 2022-10-20
Authors: Cusack, S., Kouba, T.
PDB entry 8be1: SARS-CoV-2 RBD in complex with a Fab fragment of a neutralising antibody mRBD2
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-10-21
Authors: Lulla, A., Brear, P., Fischer, K., Hollfelder, F., Hyvonen, M.
PDB entry 8be2: Crystal structure of SOS1-Nanobody77
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89794 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8be3: Crystal structure of KRasG12V-Nanobody84
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8be4: Crystal structure of SOS1-KRasG12V-Nanobody14
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8be5: Crystal structure of SOS1-KRasG12V-Nanobody22-Nanobody75
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8be6: Crystal structure of SOS1-HRas-peptidomimetic2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8988 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8be7: Crystal structure of SOS1-HRas-peptidomimetic3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8be8: Crystal structure of SOS1-HRas-peptidomimetic4
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8be9: Crystal structure of SOS1-HRas-peptidomimetic5
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8bea: Crystal structure of SOS1-HRas-peptidomimetic10
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2022-10-21
Authors: Fischer, B., Wohlkonig, A., Steyaert, J.
PDB entry 8beb: Ternary complex between VCB, BRD4-BD1 and PROTAC 49
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2022-10-21
Authors: Sorrell, F.J., Mueller, J.E., Lehmann, M., Wegener, A.
PDB entry 8bec: Crystal structure of the SARS-CoV-2 S RBD in complex with pT1375 scFV
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-21
Authors: Hansen, G., Ssebyatika, G.L., Krey, T.
PDB entry 8bed: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI peripheral tip)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.03 Å
Deposited: 2022-10-21
Authors: Klusch, N., Kuehlbrandt, W.
PDB entry 8bee: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI peripheral core)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2022-10-21
Authors: Klusch, N., Kuehlbrandt, W.
PDB entry 8bef: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI membrane core)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Deposited: 2022-10-21
Authors: Klusch, N., Kuehlbrandt, W.
PDB entry 8beg: Structure of Ig-like domains from PrgB
Classification: CELL ADHESION
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-10-21
Authors: Jarva, M., Schmitt, A., Berntsson, R.P.-A.
PDB entry 8beh: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI membrane tip)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2022-10-21
Authors: Klusch, N., Kuehlbrandt, W.
PDB entry 8bei: Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942
Classification: TRANSFERASE
Source organism: Synechococcus elongatus PCC 7942 = FACHB-805
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2022-10-21
Authors: Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.
PDB entry 8bej: GABA-A receptor a5 homomer - a5V3 - APO
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2022-10-21
Authors: Miller, P.S., Malinauskas, T.M., Hardwick, S.W., Chirgadze, D.Y.
PDB entry 8bek: Early transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 position
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9)); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2022-10-21
Authors: Cusack, S., Kouba, T.
PDB entry 8bel: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CIII membrane domain)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2022-10-21
Authors: Klusch, N., Kuehlbrandt, W.
PDB entry 8bem: STE20-like serine/threonine-protein kinase (SLK) in complex with Tivozanib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-10-21
Authors: Kraemer, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8ben: LRR domain Structure of the LRRC8C protein
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-10-21
Authors: Sawicka, M., Dutzler, R.
PDB entry 8beo: Crystal structure of E. coli glyoxylate carboligase mutant I393A with MAP
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2022-10-21
Authors: Shaanan, B., Binshtein, E.
PDB entry 8bep: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CIII MPP domain)
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2022-10-21
Authors: Klusch, N., Kuehlbrandt, W.
PDB entry 8beq: Structure of fructofuranosidase from Rhodotorula dairenensis
Classification: HYDROLASE
Source organism: Rhodotorula dairenensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2022-10-21
Authors: Jimenez-Ortega, E., Sanz-Aparicio, J.
PDB entry 8ber: Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=3 topology
Classification: VIRUS LIKE PARTICLE
Source organism: Hepatitis B virus; Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-10-21
Authors: Egorov, V.V., Shvetsov, A.V., Pichkur, E.B., Shaldzhyan, A.A., Zabrodskaya, Y.A., Vinogradova, D.S., Nekrasov, P.A., Gorshkov, A.N., Garmay, Y.P., Kovaleva, A.A., Stepanova, L.A., Tsybalova, L.M., Shtam, T.A., Myasnikov, A.G., Konevega, A.L.
PDB entry 8bes: Structure of D188A-fructofuranosidase from Rhodotorula dairenensis in complex with fructose
Classification: HYDROLASE
Source organism: Rhodotorula dairenensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2022-10-21
Authors: Jimenez-Ortega, E., Sanz-Aparicio, J.
PDB entry 8bet: Structure of D188A-fructofuranosidase from Rhodotorula dairenesis in complex with sucrose
Classification: HYDROLASE
Source organism: Rhodotorula dairenensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-10-21
Authors: Jimenez-Ortega, E., Sanz-Aparicio, J.
PDB entry 8beu: Structure of D188A-fructofuranosidase from Rhodotorula dairenensis in complex with raffinose
Classification: HYDROLASE
Source organism: Rhodotorula dairenensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2022-10-21
Authors: Jimenez-Ortega, E., Sanz-Aparicio, J.
PDB entry 8bev: Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.92 Å
Deposited: 2022-10-21
Authors: Lauer, S., Spahn, C.M.T., Schwefel, D.
PDB entry 8bew: Cryo-EM structure of the electron bifurcating Fe-Fe hydrogenase HydABC complex from Thermoanaerobacter kivui in the oxidised state
Classification: ELECTRON TRANSPORT
Source organism: Thermoanaerobacter kivui
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2022-10-22
Authors: Kumar, A., Schuller, J.M.
PDB entry 8bex: Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein at pH 3
Classification: TOXIN
Source organism: Lysinibacillus sphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-10-22
Authors: Williamson, L.J., Rizkallah, P.J., Berry, C., Oberthur, D., Galchenkova, M., Yefanov, O., Bean, R.
PDB entry 8bey: Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein at pH 7
Classification: TOXIN
Source organism: Lysinibacillus sphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2022-10-22
Authors: Williamson, L.J., Rizkallah, P.J., Berry, C., Oberthur, D., Galchenkova, M., Yefanov, O., Bean, R.
PDB entry 8bez: Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein at pH 11
Classification: TOXIN
Source organism: Lysinibacillus sphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-10-22
Authors: Williamson, L.J., Rizkallah, P.J., Berry, C., Oberthur, D., Galchenkova, M., Yefanov, O., Bean, R.
PDB entry 8bf0: Structure of a Fab portion from TKH2
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-10-23
Authors: Diskin, R., Borenstein-Katz, A.
PDB entry 8bf1: High-resolution structure of unliganded PPAR gamma in complex with the peptide PGC-1 alpha
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2022-10-23
Authors: Useini, A., Straeter, N.
PDB entry 8bf2: Human PPARgamma in complex with MEHP bound to the AF-2 and omega sub-pockets
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2022-10-23
Authors: Useini, A., Straeter, N.
PDB entry 8bf3: Crystal structure of feruloyl esterase wtsFae1B in complex with xylobiose
Classification: SUGAR BINDING PROTEIN
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2022-10-23
Authors: Wilkens, C.
PDB entry 8bf4: Crystal structure of Mouse Plexin-B1 (20-535) in complex with VHH15 and VHH14
Classification: SIGNALING PROTEIN
Source organism: Camelidae; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-10-24
Authors: Cowan, R., Hall, G., Carr, M.
PDB entry 8bf5: Early transcription elongation state of influenza A/H7N9 polymerase stalled with incoming GTP analogue
Classification: VIRAL PROTEIN
Source organism: Influenza B virus (B/Memphis/13/2003); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2022-10-24
Authors: Cusack, S., Kouba, T.
PDB entry 8bf6: X-ray structure of the CeuE Homologue from Parageobacillus thermoglucosidasius - azotochelin complex
Classification: METAL TRANSPORT
Source organism: Parageobacillus thermoglucosidasius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.969 Å
Deposited: 2022-10-24
Authors: Wilson, K.S., Duhme-Klair, A.-K., Blagova, E.V., Miller, A., Booth, R., Dodson, E.J.
PDB entry 8bf7: Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Classification: TRANSLATION
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2022-10-24
Authors: Koziej, L., Glatt, S.
PDB entry 8bf8: ISDra2 TnpB in complex with reRNA
Classification: RNA BINDING PROTEIN
Source organism: Deinococcus radiodurans R1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-10-24
Authors: Sasnauskas, G., Tamulaitiene, G., Carabias, A., Siksnys, V., Montoya, G., Druteika, G., Silanskas, A., Venclovas, C., Karvelis, T., Kazlauskas, D.
PDB entry 8bf9: Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.
Classification: TRANSPORT PROTEIN
Source organism: Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2022-10-24
Authors: Karki, S., Javanainen, M., Tranter, D., Rehan, S., Huiskonen, J., Happonen, L., Paavilainen, V.
PDB entry 8bfa: Sarkosyl-extracted AppNL-G-F Abeta42 fibril structure
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-10-24
Authors: Wilkinson, M., Leistner, C., Burgess, A., Goodfellow, S., Deuchars, S., Ranson, N.A., Radford, S.E., Frank, R.A.W.
PDB entry 8bfb: Sarkosyl-extracted AppNL-G-F Abeta42 fibril structure (Methoxy-X04-labelled mice)
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-24
Authors: Wilkinson, M., Leistner, C., Burgess, A., Goodfellow, S., Deuchars, S., Ranson, N.A., Radford, S.E., Frank, R.A.W.
PDB entry 8bfc: Binary structure of 14-3-3s and RND3 phosphopeptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-10-24
Authors: Somsen, B.A., Ottmann, C.
PDB entry 8bfd: Racemic structure of PK-7 (310HD-U2U5)
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-10-25
Authors: Kumar, P., Paterson, N.G., Woolfson, D.N.
PDB entry 8bfe: A dimeric de novo coiled-coil assembly: PK-2 (CC-TypeN-LaUbUcLd)
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-10-25
Authors: Kumar, P., Paterson, N.G., Woolfson, D.N.
PDB entry 8bff: Human PPARgamma in complex with MINCH bound to the AF-2 sub-pocket
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-10-25
Authors: Useini, A., Straeter, N.
PDB entry 8bfg: Solution structure of human apo/Calmodulin G113R (G114R)
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2022-10-25
Authors: Wimmer, R., Holler, C.V., Petersson, N.M., Brohus, M.B., Niemelae, M., Overgaard, M.T., Iwai, H.
PDB entry 8bfh: CNOT11
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-26
Authors: Basquin, J., Ozgur, S., Conti, E.
PDB entry 8bfi: human CNOT1-CNOT10-CNOT11 module
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-10-26
Authors: Basquin, J., Ozgur, S., Conti, E.
PDB entry 8bfj: CNOT11-GGNBP2 complex
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2022-10-26
Authors: Basquin, J., Ozgur, S., Conti, E.
PDB entry 8bfk: Jumbo Phage phi-kp24 tail inner tube
Classification: STRUCTURAL PROTEIN
Source organism: Klebsiella phage vB_KpM_FBKp24
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-10-26
Authors: Ouyang, R., Briegel, A.
PDB entry 8bfl: Jumbo Phage phi-kp24 empty capsid hexamers
Classification: VIRUS
Source organism: Klebsiella phage vB_KpM_FBKp24
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-10-26
Authors: Ouyang, R.
PDB entry 8bfm: Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) in complex with FZ331
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-10-26
Authors: Kraemer, A., Zhu, W.F., Hernandez-Olmos, V., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8bfn: E. coli Wadjet JetABC dimer of dimers
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-10-26
Authors: Roisne-Hamelin, F., Beckert, B., Myasnikov, A., Li, Y., Gruber, S.
PDB entry 8bfo: Structure of the apo form of Mpro from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-10-26
Authors: Medrano, F.J., Romero, A.