LiteFold/PDB huggingface dataset:
PDB entry 9exu: Complex of a mutant of the SARS-CoV-2 main protease Mpro with the nsp4/5 substrate peptide (cocrystallization).
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-04-08
Authors: Battistutta, R., Fornasier, E., Giachin, G.
PDB entry 9exv: Broad substrate scope C-C oxidation in cyclodipeptides catalysed by a flavin-dependent filament
Classification: OXIDOREDUCTASE
Source organism: Nocardiopsis dassonvillei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-08
Authors: Sutherland, E., Sundaramoorthy, R., Czekster, C.M.
PDB entry 9exw: Crystal structure of the PWWP1 domain of NSD2 bound by compound 17.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-04-09
Authors: Collie, G.W.
PDB entry 9exx: Crystal structure of the PWWP1 domain of NSD2 bound by compound 18.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.943 Å
Deposited: 2024-04-09
Authors: Collie, G.W.
PDB entry 9exy: Crystal structure of the PWWP1 domain of NSD2 bound by compound 34.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.699 Å
Deposited: 2024-04-09
Authors: Collie, G.W.
PDB entry 9exz: Efficient and scalable protein design using a relaxed sequence space
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-04-09
Authors: Frank, C.J., Dietz, H.
PDB entry 9ey0: Human mitochondrial RNase Z with tRNA-His
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-04-09
Authors: Valentin Gese, G., Hallberg, B.M.
PDB entry 9ey1: Human mitochondrial RNase Z with tRNA-His precursor
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-04-09
Authors: Valentin Gese, G., Hallberg, B.M.
PDB entry 9ey2: Human mitochondrial RNase Z with tRNA-His-CCA
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-04-09
Authors: Valentin Gese, G., Hallberg, B.M.
PDB entry 9ey3: The FK1 domain of FKBP51 in complex with (3S,11S,11aS)-12-((3,5-dichlorophenyl)sulfonyl)-5-oxo-11-vinyldecahydro-1H-6,10-epiminopyrrolo[1,2-a]azonine-3-carboxylic acid
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2024-04-09
Authors: Meyners, C., Krajczy, P., Hausch, F.
PDB entry 9ey4: The FK1 domain of FKBP51 in complex with (3S,11S)-12-((3,5-dichlorophenyl)sulfonyl)-5-oxo-11-vinyldecahydro-1H-6,10-epiminopyrrolo[1,2-a]azonine-3-carboxamide
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2024-04-09
Authors: Meyners, C., Krajczy, P., Hausch, F.
PDB entry 9ey5: Crystal structure of human tyrosinase-related protein 1 (TYRP1) in complex with (S)-2,4-dihydroxyphenylalanine
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-04-09
Authors: Ng, Y.M., Soler-Lopez, M.
PDB entry 9ey6: Crystal structure of human tyrosinase-related protein 1 (TYRP1)
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.228 Å
Deposited: 2024-04-09
Authors: Ng, Y.M., Soler-Lopez, M.
PDB entry 9ey7: Crystal structure of human tyrosinase-related protein 1 (TYRP1) in complex with (R)-2,4-dihydroxyphenylalanine
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-04-09
Authors: Ng, Y.M., Soler-Lopez, M.
PDB entry 9ey8: Crystal structure of human tyrosinase-related protein 1 (TYRP1) in complex with (s)-amino-L-tyrosine
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-09
Authors: Ng, Y.M., Soler-Lopez, M.
PDB entry 9ey9: Yeast 20S proteasome in complex with a sybactin derivative (PheSyr)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-04-09
Authors: Praeve, L., Kuttenlochner, W., Tabak, W.W.A., Langer, C., Kaiser, M., Groll, M., Bode, H.B.
PDB entry 9eya: Complex of a mutant of the SARS-CoV-2 main protease Mpro with the nsp4/5 substrate peptide (soaking).
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-04-09
Authors: Battistutta, R., Fornasier, E., Giachin, G.
PDB entry 9eyb: A-SPECTRIN SH3 DOMAIN V9L, A11V, V23L, M25C, V46W, V53L and V58L MUTANT
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.337 Å
Deposited: 2024-04-09
Authors: Vizarraga, D., Fita, I., Cianferoni, D., Delgado, J., Serrano, L.
PDB entry 9eyc: A-SPECTRIN SH3 DOMAIN V9L, A11V, V23L, M25C, V46W, V53L and V58L MUTANT
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.06 Å
Deposited: 2024-04-09
Authors: Vizarraga, D., Fita, I., Cianferoni, D., Delgado, J., Serrano, L.
PDB entry 9eyd: Structural basis of specific lysine transport by Pseudomonas aeruginosa permease LysP
Classification: MEMBRANE PROTEIN
Source organism: Lama glama; Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-04-09
Authors: Nji, E., Matsuoka, R.
PDB entry 9eye: A-SPECTRIN SH3 DOMAIN V9L, A11V, L31V, V44I, V53I MUTANT
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2024-04-09
Authors: Vizarraga, D., Fita, I., Cianferoni, D., Delgado, J., Serrano, L.
PDB entry 9eyf: A-SPECTRIN SH3 DOMAIN V9L, A11V, V23L, M25L, V46Y, V53I MUTANT
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2024-04-09
Authors: Vizarraga, D., Fita, I., Cianferoni, D., Delgado, J., Serrano, L.
PDB entry 9eyg: Structure of Tannerella forsythia endopeptidase O (TfPepO)
Classification: HYDROLASE
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-09
Authors: Zak, K.M., Grudnik, P., Waligorska, I., Ksiazek, M.
PDB entry 9eyh: Ubiquitin conjugating enzyme Ubc6 UBC domain with isopeptide-linked ubiquitin
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-09
Authors: Swarnkar, A., Stein, A.
PDB entry 9eyi: Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4p
Classification: HYDROLASE
Source organism: Candidatus Cloacimonas acidaminovorans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-04-09
Authors: Tamulaitiene, G., Sasnauskas, G., Smalakyte, D., Tamulaitis, G.
PDB entry 9eyj: Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to cA4
Classification: HYDROLASE
Source organism: Candidatus Cloacimonas acidaminovorans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-04-09
Authors: Tamulaitiene, G., Sasnauskas, G., Smalakyte, D., Tamulaitis, G.
PDB entry 9eyk: Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4>p
Classification: HYDROLASE
Source organism: Candidatus Cloacimonas acidaminovorans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-04-09
Authors: Tamulaitiene, G., Sasnauskas, G., Smalakyte, D., Tamulaitis, G.
PDB entry 9eyl: dN53 deletion variant of monomeric Fav - actinoporin from Orbicella faveolata
Classification: TOXIN
Source organism: Orbicella faveolata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-04-09
Authors: Solinc, G., Svigelj, T., Anderluh, G., Podobnik, M.
PDB entry 9eym: The structure of solubilized octameric pore of actinoporin Fav prepared on DOPC:sphingomyelin membranes
Classification: TOXIN
Source organism: Orbicella faveolata
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-04-09
Authors: Solinc, G., Srnko, M., Svigel, T., Anderluh, G., Podobnik, M.
PDB entry 9eyn: The structure of solubilized octameric pore of actinoporin Fav prepared on DOPC, cholesterol, sphingomyelin membranes
Classification: TOXIN
Source organism: Orbicella faveolata
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-04-09
Authors: Solinc, G., Srnko, M., Svigel, T., Anderluh, G., Podobnik, M.
PDB entry 9eyo: The structure of solubilized octameric pore of actinoporin Fav prepared on POPG, cholesterol, sphingomyelin membranes
Classification: TOXIN
Source organism: Orbicella faveolata
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-04-09
Authors: Solinc, G., Srnko, M., Anderluh, G., Podobnik, M.
PDB entry 9eyp: The structure of octameric pore of RN1 variant of actinoporin Fav
Classification: TOXIN
Source organism: Orbicella faveolata
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-04-09
Authors: Solinc, G., Srnko, M., Anderluh, G., Crnkovic, A., Podobnik, M.
PDB entry 9eyq: The structure of nonameric pore of RN1 variant of actinoporin Fav
Classification: TOXIN
Source organism: Orbicella faveolata
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-04-09
Authors: Solinc, G., Srnko, M., Anderluh, G., Crnkovic, A., Podobnik, M.
PDB entry 9eyr: VDR complex with gemini analog UG-480
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2024-04-09
Authors: Rochel, N.
PDB entry 9eys: Structure of Far-Red Photosystem I from C. thermalis PCC 7203
Classification: PHOTOSYNTHESIS
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.01 Å
Deposited: 2024-04-09
Authors: Consoli, G., Tufaill, F., Murray, J.W., Fantuzzi, A., Rutherford, A.W.
PDB entry 9eyt: Crystal structure of Yeast Clathrin Heavy Chain N-terminal domain bound to Epsin-1 peptide (LIDL)
Classification: ENDOCYTOSIS
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-04-09
Authors: Defelipe, L.A., Bento, I., Garcia Alai, M.M.
PDB entry 9eyu: Human PRMT5 in complex with AZ compound 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-04-09
Authors: Debreczeni, J.
PDB entry 9eyv: Human PRMT5 in complex with AZ compound 12
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-04-09
Authors: Debreczeni, J.
PDB entry 9eyw: Human PRMT5 in complex with AZ compound 21
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-04-09
Authors: Debreczeni, J.
PDB entry 9eyx: Human PRMT5 in complex with AZ compound 28
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-09
Authors: Debreczeni, J.
PDB entry 9eyy: Poliovirus type 1 (strain Mahoney) native conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Classification: VIRUS LIKE PARTICLE
Source organism: Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-09
Authors: Bahar, M.W., Sherry, L., Stonehouse, N.J., Rowlands, D.J., Fry, E.E., Stuart, D.I.
PDB entry 9ez0: Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Classification: VIRUS LIKE PARTICLE
Source organism: Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-10
Authors: Bahar, M.W., Sherry, L., Stonehouse, N.J., Rowlands, D.J., Fry, E.E., Stuart, D.I.
PDB entry 9ez1: Vitamin D receptor in complex with 1,4a,25-trihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-10
Authors: Rochel, N.
PDB entry 9ez2: Vitamin D receptor complex with 1,4b,25-trihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-10
Authors: Rochel, N.
PDB entry 9ez3: Crystal structure of human CLK3 bound to RN129
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-04-10
Authors: Kraemer, A., Raig, N., Knapp, S.
PDB entry 9ez4: Complex of a mutant of the SARS-CoV-2 main protease Mpro with the nsp5/6 substrate peptide.
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-10
Authors: Battistutta, R., Fornasier, E., Giachin, G.
PDB entry 9ez5: BsmI (Inactive) crystallized with Mg2+ and cognate dsDNA
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.846 Å
Deposited: 2024-04-10
Authors: Sieskind, R., Missoury, S., Madru, C., Commenge, I., Niogret, G., Rondelez, Y., Haouz, A., Legrand, P., Sauguet, L., Delarue, M.
PDB entry 9ez6: Complex of a mutant of the SARS-CoV-2 main protease Mpro with the nsp14/15 substrate peptide.
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-04-10
Authors: Battistutta, R., Fornasier, E., Giachin, G.
PDB entry 9ez7: BsmI (Nicking top mutant) crystallized with Ca2+ and cognate dsDNA
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.031 Å
Deposited: 2024-04-10
Authors: Sieskind, R., Missoury, S., Madru, C., Commenge, I., Niogret, G., Hollenstein, M., Rondelez, Y., Haouz, A., Legrand, P., Sauguet, L., Delarue, M.
PDB entry 9ez8: Cryo-EM structure of the icosahedral lumazine synthase from Vicia faba.
Classification: TRANSFERASE
Source organism: Vicia faba
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-04-11
Authors: Chee, M., Trapani, S., Hoh, F., Lai Kee Him, J., Yvon, M., Blanc, S., Bron, P.
PDB entry 9ez9: Crystal structure of human Dihydroorotate Dehydrogenase in complex with the inhibitor N-(3'-(2,2-difluoropropoxy)-2,3,5,6-tetrafluoro-[1,1'-biphenyl]-4-yl)-2-hydroxypyrazolo[1,5-a]pyridine-3-carboxamide
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-11
Authors: Alberti, M., Miggiano, R.
PDB entry 9eza: Interleukin-31 Receptor D1D2 in complex with Nemolizumab derived scFv
Classification: CYTOKINE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.147 Å
Deposited: 2024-04-11
Authors: Bloch, Y., Savvides, S.N.
PDB entry 9ezb: SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant P67S
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-04-11
Authors: Dhamotharan, K., Schlundt, A., Guenther, S.
PDB entry 9ezc: Structure of the extracellular subdomain of a homomeric LRRC8C truncation disease mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-04-11
Authors: Rutz, S., Quinodoz, M., Peter, V., Garavelli, L., Innes, M.A., Kellenberger, S., Peng, Z., Barone, A., Campos-Xavier, B., Unger, S., Rivolta, C., Dutzler, R., Superti-Furga, A.
PDB entry 9ezd: BsmI (Bottom Nicking mutant) crystallized with Mg2+ and cognate dsDNA (Post-reactive complex)
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.635 Å
Deposited: 2024-04-11
Authors: Sieskind, R., Missoury, S., Madru, C., Commenge, I., Niogret, G., Rondelez, Y., Haouz, A., Legrand, P., Sauguet, L., Delarue, M.
PDB entry 9eze: Structure of subdomain 3 of the Plasmodium vivx Duffy binding protein (PvDBP) bound to human antibody DB9
Classification: CELL ADHESION
Source organism: Homo sapiens; Plasmodium vivax Sal-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-04-11
Authors: Barber, N.M., Higgins, M.K.
PDB entry 9ezg: Crystal structure of human Casein Kinase II subunit alpha (CK2a1) in complex with 5-((4-((2-aminoethyl)(ethyl)amino)-3-(4H-1,2,4-triazol-4-yl)phenyl)amino)-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidine-3-carbonitrile
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-04-12
Authors: Kraemer, A., Ong, H.W., Yang, X., Brown, J.W., Chang, E., Willson, T., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 9ezh: Structure of single-domain antibody VHH_h4 in complex with human Vsig4
Classification: IMMUNE SYSTEM
Source organism: Camelidae; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-04-12
Authors: Vizarraga, D., Cianferoni, D., Delgado, J., van der Kant, R., Garcia, T., Maragkou, K., Zhang, Z., Dewilde, M., Schymkowitz, J., Rousseau, F., Serrano, L.
PDB entry 9ezi: Structure of single-domain antibody VHH_h5 in complex with human Vsig4
Classification: IMMUNE SYSTEM
Source organism: Camelidae; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-04-12
Authors: Vizarraga, D., Cianferoni, D., Delgado, J., van der Kant, R., Garcia, T., Maragkou, K., Zhang, Z., Dewilde, M., Schymkowitz, J., Rousseau, F., Serrano, L.
PDB entry 9ezj: Apo human TDO in complex with a bound inhibitor (Cpd-4)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.612 Å
Deposited: 2024-04-12
Authors: Wicki, M., Mac Sweeney, A.
PDB entry 9ezk: Nucleoside-2'-deoxyribosyltransferase from Lactobacillus leichmannii (apo).
Classification: TRANSFERASE
Source organism: Lactobacillus leichmannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2024-04-12
Authors: Ascham, A., Salihovic, A., Burley, G., Grogan, G.
PDB entry 9ezl: Crystal structure of trehalose synthase mutant N253H from Deinococcus radiodurans
Classification: ISOMERASE
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2024-04-12
Authors: Ye, L.C., Chen, S.C.
PDB entry 9ezm: CryoEM structure of the contracted sheath in H. borinquense
Classification: STRUCTURAL PROTEIN
Source organism: Halogeometricum borinquense DSM 11551
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-04-12
Authors: Zachs, T., Malit, J.J., Xu, J., Schuerch, A., Sivabalasarma, S., Nussbaum, P., Albers, S.V., Pilhofer, M.
PDB entry 9ezn: Canonical class 1 structure of the human cortactin SH3 domain in complex with WIP-derived peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2024-04-13
Authors: Sokolik, C.G., Chill, J.H.
PDB entry 9ezo: Canonical class 2 structure of the human cortactin SH3 domain in complex with WIP-derived peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2024-04-13
Authors: Sokolik, C.G., Chill, J.H.
PDB entry 9ezp: Non-canonical structure of the human cortactin SH3 domain in complex with WIP-derived peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2024-04-13
Authors: Sokolik, C.G., Chill, J.H.
PDB entry 9ezq: XFEL structure of the free hNQO1 unmixed (P3083)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-14
Authors: Martin-Garcia, J.M., Grieco, A., Botha, S.
PDB entry 9ezr: XFEL structure of hNQO1 mixed with NADH in an extended orientation at 0.3 s
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2024-04-14
Authors: Grieco, A., Quereda-Moraleda, I., Botha, S., Martin-Garcia, J.M.
PDB entry 9ezs: XFEL structure of free hNQO1 unmixed (P4502)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-14
Authors: Martin-Garcia, J.M., Grieco, A., Botha, S.
PDB entry 9ezt: XFEL structure of hNQO1 mixed with NADH for 1.2 s
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-14
Authors: Martin-Garcia, J.M., Grieco, A., Botha, S., Quereda-Moraleda, I.
PDB entry 9ezu: Structure of the single-domain antibody VHH_h1 in complex with human Vsig4
Classification: IMMUNE SYSTEM
Source organism: Camelidae; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2024-04-14
Authors: Markovic, I., Savvides, S.N.
PDB entry 9ezv: Structure of the single-domain antibody VHH_h2 in complex with human Vsig4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-04-14
Authors: Markovic, I., Savvides, S.N.
PDB entry 9ezw: Structure of the single-domain antibody VHH_h3 in complex with human Vsig4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-14
Authors: Markovic, I., Savvides, S.N.
PDB entry 9ezx: Vibrio cholerae DdmD apo complex
Classification: IMMUNE SYSTEM
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2024-04-14
Authors: Loeff, L., Jinek, M.
PDB entry 9ezy: Vibrio cholerae DdmD-DdmE holo complex
Classification: IMMUNE SYSTEM
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2024-04-14
Authors: Loeff, L., Jinek, M.
PDB entry 9ezz: Bacterial histone protein HBb from Bdellovibrio bacteriovorus bound to DNA
Classification: DNA BINDING PROTEIN
Source organism: Bdellovibrio bacteriovorus HD100; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-14
Authors: Hu, Y., Albrecht, R., Hartmann, M.D.
PDB entry 9f00: Complex between D-SH2 domain of ABL with monobody DAM27
Classification: PROTEIN BINDING
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2024-04-14
Authors: Essen, L.-O., Hantschel, O., Schmidt, N., Korf, L.
PDB entry 9f01: Complex between D-SH2 domain of ABL with monobody 'DAM21
Classification: PROTEIN BINDING
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2024-04-14
Authors: Essen, L.-O., Hantschel, O., Schmidt, N., Korf, L.
PDB entry 9f02: HIV-1 envelope glycoprotein (BG505 gp140 SOSIP.664) trimer in complex with three copies of ELC07 broadly neutralizing antibody.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-04-15
Authors: Hope, J., Alguel, Y., Nans, A., Cherepanov, P.
PDB entry 9f03: mRhubarb720-WT
Classification: FLUORESCENT PROTEIN
Source organism: Rhodopseudomonas palustris
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-04-15
Authors: Aksakal, O., Rizkallah, P.J., Warren, A., Lipka-Lloyd, M., Jones, D.D.
PDB entry 9f04: Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the pre-contraction state - tube and sheath proteins
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-04-15
Authors: Binovsky, J., Siborova, M., Skubnik, K., Novacek, J., Plevka, P.
PDB entry 9f05: Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - sheath proteins
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-15
Authors: Binovsky, J., Siborova, M., Skubnik, K., Novacek, J., Plevka, P.
PDB entry 9f06: Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - tube proteins
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-04-15
Authors: Binovsky, J., Siborova, M., Plevka, P.
PDB entry 9f07: TUBULIN:STATHMIN:DARPIN:TAU MTBR3 COMPLEX
Classification: CELL CYCLE
Source organism: Homo sapiens; Ovis aries; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.211 Å
Deposited: 2024-04-15
Authors: Ammar Khodja, L., Campanacci, V., Gigant, b.
PDB entry 9f08: Nucleoside-2'-deoxyribosyltransferase from Lactobacillus leichmannii. Covalent complex with 2-deoxyribose.
Classification: TRANSFERASE
Source organism: Lactobacillus leichmannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.371 Å
Deposited: 2024-04-15
Authors: Ascham, A., Salihovic, A., Burley, G., Grogan, G.
PDB entry 9f09: Nucleoside-2'-deoxyribosyltransferase from Lactobacillus leichmannii. Complex with 2-deoxyribose, 7-Bromo-1H-imidazo[4,5-b]pyridine and 2'-deoxycytidine
Classification: TRANSFERASE
Source organism: Lactobacillus leichmannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2024-04-15
Authors: Ascham, A., Salihovic, A., Burley, G., Grogan, G.
PDB entry 9f0a: N5 Adduct of LSD1-CoREST in complex with MC4455
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2024-04-15
Authors: Barone, M., Mattevi, A.
PDB entry 9f0e: Bacterial histone protein HBb from Bdellovibrio bacteriovorus bound to DNA
Classification: DNA BINDING PROTEIN
Source organism: Bdellovibrio bacteriovorus HD100; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-04-15
Authors: Hu, Y., Albrecht, R., Hartmann, M.D.
PDB entry 9f0f: Coproporphyrin III - LmCpfC WT complex soaked with Fe2+ and anomalous densities
Classification: METAL BINDING PROTEIN
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-04-16
Authors: Gabler, T., Hofauer, S.
PDB entry 9f0g: LmCpfC H182A variant in complex with iron coproporhyrin III
Classification: METAL BINDING PROTEIN
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-04-16
Authors: Gabler, T., Hofbauer, S.
PDB entry 9f0h: cryo-EM structure of carboxysomal mini-shell icosahedral assembly from co-expression of CsoS1C, CsoS4A, and CsoS2-C (T = 9)
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.8 Å
Deposited: 2024-04-16
Authors: Wang, P., Marles-Wright, J., Liu, L.N.
PDB entry 9f0i: Human Cyclophilin D in complex with fragment
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-04-16
Authors: Silva, D.O., Graedler, U., Bandeiras, T.M.
PDB entry 9f0j: Cryo-EM structure of the I923V MDA5-dsRNA filament without nucleotide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-04-16
Authors: Singh, R., Herrero del Valle, A., Modis, Y.
PDB entry 9f0k: Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a mammalian expression system
Classification: VIRUS LIKE PARTICLE
Source organism: Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-16
Authors: Bahar, M.W., Porta, C., Fry, E.E., Stuart, D.I.
PDB entry 9f0l: Scalable protein design using hallucination in a relaxed sequence space
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-04-17
Authors: Frank, C.J., Motoyuki, H., Dietz, H.
PDB entry 9f0m: Crystal structure of Ta_Cel5A E133Q Y200F variant in complex with cellopentaose
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus ATCC 26904
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2024-04-17
Authors: Dutoit, R.
PDB entry 9f0n: Crystal structure of Ta_Cel5A E133A variant, apoform
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus ATCC 26904
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2024-04-17
Authors: Dutoit, R.
PDB entry 9f0o: The molecular basis and modulation of lamin-specific chromatin interaction
Classification: STRUCTURAL PROTEIN
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-04-17
Authors: Wang, B., Luo, Q.
PDB entry 9f0p: VIM-2 in complex with GKV61 (5c) - dynamically chiral phosphonic acid-type metallo-beta-lactamase inhibitors
Classification: ANTIBIOTIC
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2024-04-17
Authors: Bartels, K., Prester, A., Bosman, R., Gulyas, K.V., Erdelyi, M., Schulz, E.C.
PDB entry 9f0q: VIM-2 in complex with GKV53 (5d) - dynamically chiral phosphonic acid-type metallo-beta-lactamase inhibitors
Classification: ANTIBIOTIC
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-04-17
Authors: Bartels, K., Prester, A., Bosman, R., Gulyas, K.V., Erdelyi, M., Schulz, E.C.
PDB entry 9f0r: VIM-2 in complex with GKV65 (5g) - dynamically chiral phosphonic acid-type metallo-beta-lactamase inhibitors
Classification: ANTIBIOTIC
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-04-17
Authors: Bosman, R., Prester, A., Bartels, K., Gulyas, K.V., Erdelyi, M., Schulz, E.C.
PDB entry 9f0s: VIM-2 in complex with GKV63 (5j) - dynamically chiral phosphonic acid-type metallo-beta-lactamase inhibitors
Classification: ANTIBIOTIC
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-04-17
Authors: Bosman, R., Prester, A., Bartels, K., Gulyas, K.V., Erdelyi, M., Schulz, E.C.
PDB entry 9f0t: Structure of KPC-2 complexed with benzoxaborole AK-110
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2024-04-17
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 9f0u: Structure of KPC-2 complexed with benzoxaborole AK-425
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2024-04-17
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 9f0v: Structure of KPC-2 complexed with benzoxaborole AK-63
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-04-17
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 9f0x: CryoEM structure of the F plasmid relaxosome in its pre-initiation state, derived from the ds-27_+143-R Locally-refined Map 3.76 A
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-04-17
Authors: Williams, S.M., Waksman, G.
PDB entry 9f0y: CryoEM structure of the F plasmid relaxosome with TraI in its TE mode, derived from the ss-27_+8ds+9_+143-R Locally-refined 3.45 A Map.
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-04-17
Authors: Williams, S.M., Waksman, G.
PDB entry 9f0z: CryoEM structure of the F plasmid relaxosome with truncated TraI1-863 in its TE mode, derived from the ss-27_+8ds+9_+143-R_deltaAH+CTD Locally-refined 3.42 A Map
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-04-17
Authors: Williams, S.M., Waksman, G.
PDB entry 9f10: CryoEM structure of the F plasmid relaxosome with TraI in its TE mode, without accessory protein TraM. Derived from the ss-27_+8ds+9_+143-R_deltaTraM Locally-refined 2.94 A Map.
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-04-17
Authors: Williams, S.M., Waksman, G.
PDB entry 9f11: CryoEM structure of the F plasmid relaxosome with oriT DNA ss-27_+3ds+4_+143 and TraI its TE mode, derived from ss-27_+3ds+4_+143-R Locally-refined 3.68 A Map.
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-04-17
Authors: Williams, S.M., Waksman, G.
PDB entry 9f12: CryoEM structure of the F plasmid relaxosome with oriT DNA ss-27_-3ds-2_+143 and TraI its TE mode, derived from ss-27_-3ds-2_+143-R Locally-refined 3.42 A Map.
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-04-17
Authors: Williams, S.M., Waksman, G.
PDB entry 9f13: Crystal structure of HLA-C*12:02 in complex with KAYNVTQAF (KF9), a 9-mer epitope from SARS-CoV-2 Nucleocapsid (N266-274)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2024-04-18
Authors: Ahn, Y.M., Maddumage, J.C., Chatzileontiadou, D.S.M., Gras, S.
PDB entry 9f14: The crystal structure of full length tetramer CysB from Klebsiella aerogenes in complex with N-acetylserine
Classification: TRANSCRIPTION
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-04-18
Authors: Verschueren, K.H.G., Dodson, E.J., Wilkinson, A.J.
PDB entry 9f15: Carbonic anhydrase II variant with bound iron complex
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-04-18
Authors: Zhang, K., Jakob, R.P., Ward, T.R.
PDB entry 9f16: Structure of a homomeric LRRC8C point mutation disease mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-04-18
Authors: Rutz, S., Quinodoz, M., Peter, V., Garavelli, L., Innes, M.A., Kellenberger, S., Peng, Z., Barone, A., Campos-Xavier, B., Unger, S., Rivolta, C., Dutzler, R., Superti-Furga, A.
PDB entry 9f17: Crystal structure of N term His-tag Adenylosuccinate synthetase from Helicobacter pylori
Classification: LIGASE
Source organism: Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-04-18
Authors: Stefanic, Z.
PDB entry 9f18: Crystal structure of a first-in-class antibody for alpha-1,6-fucosylated prostate-specific antigen
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-04-18
Authors: Halldorsson, S.
PDB entry 9f19: Human USP30 chimera in complex with NK036 inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-04-18
Authors: Kazi, N.H., Gersch, M.
PDB entry 9f1a: Crystal structure of human soluble epoxide hydrolase C-terminal domain in complex with a benzohomoadamantane-based urea inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-04-18
Authors: Qiu, Q., Prischi, F., Jora, B., Vazquez, S., Conte, M.R.
PDB entry 9f1b: Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Classification: TRANSLATION
Source organism: Homo sapiens; Oryctolagus cuniculus; Schistosoma japonicum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-04-18
Authors: Yudin, D., Scaiola, A., Ban, N.
PDB entry 9f1c: Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
Classification: TRANSLATION
Source organism: Homo sapiens; Oryctolagus cuniculus; Schistosoma japonicum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-04-18
Authors: Yudin, D., Scaiola, A., Ban, N.
PDB entry 9f1d: Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
Classification: TRANSLATION
Source organism: Homo sapiens; Oryctolagus cuniculus; Schistosoma japonicum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-04-18
Authors: Yudin, D., Scaiola, A., Ban, N.
PDB entry 9f1e: Remorin protein StREM13_171-198
Classification: LIPID BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-04-18
Authors: Xu, Z., Habenstein, B.
PDB entry 9f1f: Remorin protein StREM13_160-198
Classification: PEPTIDE BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-04-18
Authors: Xu, Z., Habenstein, B.
PDB entry 9f1g: Remorin protein StREM13_150-198
Classification: PEPTIDE BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-04-18
Authors: Xu, Z., Habenstein, B.
PDB entry 9f1i: Crystal structure of a first-in-class antibody for alpha-1,6-fucosylated prostate-specific antigen, target bound
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2024-04-19
Authors: Halldorsson, S.
PDB entry 9f1j: First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 14
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13003 Å
Deposited: 2024-04-19
Authors: Balourdas, D.I., Edmonds, A.K., Marsh, G.P., Maple, H.J., Spencer, J., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 9f1k: First bromodomain of BRD4 in complex with ISOX-DUAL based inhibitor 30
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2024-04-19
Authors: Balourdas, D.I., Edmonds, A.K., Marsh, G.P., Maple, H.J., Spencer, J., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 9f1l: First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 35
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.30001 Å
Deposited: 2024-04-19
Authors: Balourdas, D.I., Edmonds, A.K., Marsh, G.P., Maple, H.J., Spencer, J., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 9f1m: First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 45
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.90001 Å
Deposited: 2024-04-19
Authors: Balourdas, D.I., Edmonds, A.K., Marsh, G.P., Maple, H.J., Spencer, J., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 9f1n: First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 46
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-04-19
Authors: Balourdas, D.I., Edmonds, A.K., Marsh, G.P., Maple, H.J., Spencer, J., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 9f1o: Crystal structure of the DyP-type peroxidase PROSS variant from Pseudomonas putida
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-04-19
Authors: Lorena, C., Borges, P.T., Frazao, C., Martins, L.O.
PDB entry 9f1q: Crystal structure of a DyP-type peroxidase Fireprot variant from Pseudomonas putida
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-04-19
Authors: Lorena, C., Borges, P.T., Frazao, C., Martins, L.O.
PDB entry 9f1r: Cryo-EM structure of SV2B-Hc-A1 complex
Classification: MEMBRANE PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2024-04-20
Authors: Khanppnavar, B., Leka, O., Korkhov, V., Kammerer, R.
PDB entry 9f1s: Structure of UP1 S4ES6E phosphomimetic mutant
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-04-20
Authors: Dunnett, L., Prischi, F.
PDB entry 9f1t: Psychrophilic laccase (multicopper oxidase) from Oenococcus oeni 229 without Histag
Classification: OXIDOREDUCTASE
Source organism: Oenococcus oeni
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-04-20
Authors: Paredes, F., Casino, P.
PDB entry 9f1u: Cryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 81-degree helical twist
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2024-04-20
Authors: Singh, R., Herrero del Valle, A., Modis, Y.
PDB entry 9f1v: Crystal structure of Borrelia burgdorferi CspZ-YA
Classification: IMMUNE SYSTEM
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-20
Authors: Brangulis, K., Malfetano, J., Marcinkiewicz, A.L., Wang, A., Chen, Y.-L., Yang, X., Lee, W., Bottazzi, M.-E., Pal, U., Hsieh, C.-L., Chen, W.-H., Lin, Y.-P.
PDB entry 9f1w: SFX room temperature structure of Oscillatoria acuminata adenylyate cyclase.
Classification: LYASE
Source organism: Oscillatoria acuminata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-04-20
Authors: Kapetanaki, S., Coquelle, N., Weik, M.
PDB entry 9f1x: SSX room temperature structure of Oscillatoria acuminata adenylyate cyclase.
Classification: LYASE
Source organism: Oscillatoria acuminata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-20
Authors: Kapetanaki, S., Coquelle, N., Weik, M.
PDB entry 9f1y: Crystal structure of Oscillatoria acuminata adenylyate cyclase at 100K
Classification: LYASE
Source organism: Oscillatoria acuminata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-20
Authors: Kapetanaki, S., Coquelle, N., Weik, M.
PDB entry 9f1z: Crystal structure of adenylyate cyclase variant Y6W
Classification: LYASE
Source organism: Oscillatoria acuminata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-20
Authors: Kapetanaki, S., Coquelle, N., Weik, M.
PDB entry 9f20: Cryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 88-degree helical twist
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2024-04-20
Authors: Singh, R., Herrero del Valle, A., Modis, Y.
PDB entry 9f21: Crystal structure of Borrelia burgdorferi CspZ-YACS
Classification: IMMUNE SYSTEM
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-20
Authors: Brangulis, K., Malfetano, J., Marcinkiewicz, A.L., Wang, A., Chen, Y.-L., Yang, X., Lee, W., Bottazzi, M.-E., Pal, U., Hsieh, C.-L., Chen, W.-H., Lin, Y.-P.
PDB entry 9f22: DARPin eGFP complex DP1 (3G190.24)
Classification: PROTEIN BINDING
Source organism: Aequorea victoria; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-22
Authors: Mittl, P.R., Winkelvoss, D.
PDB entry 9f23: DARPin eGFP complex DP2 (2G156)
Classification: PROTEIN BINDING
Source organism: Aequorea victoria; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-04-22
Authors: Mittl, P.R., Hansen, S.
PDB entry 9f24: DARPin eGFP complex DP4 (2G71)
Classification: PROTEIN BINDING
Source organism: Aequorea victoria; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2024-04-22
Authors: Mittl, P.R., Winkelvoss, D.
PDB entry 9f25: Cryo-EM structure of Botulinum neurotoxin A LC-HN domain
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-04-22
Authors: Khanppnavar, B., Leka, O., Korkhov, V., Kammerer, R.
PDB entry 9f26: Crystal structure of the PriS_PriL-Rpa2WH ternary complex from P. abyssi
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.501 Å
Deposited: 2024-04-22
Authors: Madru, C., Legrand, P., Haouz, A., Sauguet, L.
PDB entry 9f27: Solution structure of the Pyrococcus abyssi Rpa2 winged-helix domain
Classification: REPLICATION
Source organism: Pyrococcus abyssi GE5
Experimental method: SOLUTION NMR
Deposited: 2024-04-22
Authors: Le Meur, R.A., Madru, C., Cordier, F., Sauguet, L., Guijarro, J.I.
PDB entry 9f28: Crystal structure of the heterodimeric primase from pyrococcus abyssi (deletion of the PriL-CTD domain)
Classification: REPLICATION
Source organism: Pyrococcus abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-04-22
Authors: Madru, C., Sauguet, L.
PDB entry 9f29: Pyrococcus abyssi PolD in complex with Rpa2 winged-helix domain class 1 (composite map)
Classification: REPLICATION
Source organism: Pyrococcus abyssi GE5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-04-22
Authors: Martinez-Carranza, M., Sauguet, L.
PDB entry 9f2a: Pyrococcus abyssi PolD in complex with Rpa2 winged-helix domain class 2 (composite map)
Classification: REPLICATION
Source organism: Pyrococcus abyssi GE5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-04-22
Authors: Martinez-Carranza, M., Sauguet, L.
PDB entry 9f2b: Focused refinement of SV2B luminal domain and BoNT/A1 complex
Classification: MEMBRANE PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-04-22
Authors: Khanppnavar, B., Leka, O., Korkhov, V., Kammerer, R.
PDB entry 9f2c: Archaeal histone protein HTkC from Thermococcus kodakarensis
Classification: DNA BINDING PROTEIN
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-04-22
Authors: Hu, Y., Albrecht, R., Hartmann, M.D.
PDB entry 9f2d: KIR2DL1 bound to RIFIN RBK21
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.886 Å
Deposited: 2024-04-22
Authors: Chamberlain, S.G., Higgins, M.K.
PDB entry 9f2e: Carbonic anhydrase II variant with bound iron complex in space group C2 (ArPase)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.015 Å
Deposited: 2024-04-23
Authors: Jakob, R.P., Ward, T.R.
PDB entry 9f2f: Carbonic anhydrase II variant with bound iron complex in space group R3 (ArPase)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-04-23
Authors: Jakob, R.P., Ward, T.R.