LiteFold/PDB huggingface dataset:
PDB entry 3a7z: Crystal Structure of Trypsin complexed with (E)-4-((1-methylpiperidin-4-yloxyimino)methyl)benzimidamide (soaking 3hours)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a80: Crystal Structure of Trypsin complexed with (E)-2-(4-carbamimidoylbenzylideneaminooxy)-2-methylpropanoic acid (soaking 40seconds)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a81: Crystal Structure of Trypsin complexed with (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide (soaking 8 hours)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a82: Crystal Structure of Trypsin complexed with pre-synthesized (E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a83: Crystal Structure of Trypsin complexed with pre-synthesized (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a84: Crystal Structure of Trypsin complexed with(E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid (soaking 5 seconds)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a85: Crystal Structure of Trypsin complexed with (E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid (soaking 15 seconds)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a86: Crystal Structure of Trypsin complexed with (E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid (soaking 30 seconds)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a87: Crystal Structure of Trypsin complexed with (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide (soaking 5 minutes)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a88: Crystal Structure of Trypsin complexed with (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide (soaking 30 minutes)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a89: Crystal Structure of Trypsin complexed with (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide (soaking 4 hours)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a8a: Crystal Structure of Trypsin complexed with 4-formylbenzimidamide and aniline
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a8b: Crystal Structure of Trypsin complexed with (E)-4-((4-bromophenylimino)methyl)benzimidamide
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a8c: Crystal Structure of Trypsin complexed with (E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid (soaking with mixture of [(E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid] and [(E)-2-(4-carbamimidoylbenzylideneaminooxy)-2-methylpropanoic acid])
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a8d: Crystal Structure of Trypsin complexed with (E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid (under aniline-free condition)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a8e: The structure of AxCesD octamer complexed with cellopentaose
Classification: BIOSYNTHETIC PROTEIN
Source organism: Acetobacter xylinus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2009-10-05
Authors: Hu, S.Q., Tajima, K., Zhou, Y., Yao, M., Tanaka, I.
PDB entry 3a8g: Crystal structure of Nitrile Hydratase mutant S113A complexed with Trimethylacetonitrile
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2009-10-06
Authors: Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3a8h: Crystal structure of Nitrile Hydratase mutant S113A complexed with Trimethylacetamide
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2009-10-06
Authors: Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3a8i: Crystal Structure of ET-EHred-5-CH3-THF complex
Classification: TRANSFERASE/TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2009-10-06
Authors: Okamura-Ikeda, K., Hosaka, H.
PDB entry 3a8j: Crystal Structure of ET-EHred complex
Classification: TRANSFERASE/TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2009-10-06
Authors: Okamura-Ikeda, K., Hosaka, H.
PDB entry 3a8k: Crystal Structure of ETD97N-EHred complex
Classification: TRANSFERASE/TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-10-06
Authors: Okamura-Ikeda, K., Hosaka, H.
PDB entry 3a8l: Crystal structure of photo-activation state of Nitrile Hydratase mutant S113A
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2009-10-06
Authors: Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3a8m: Crystal structure of Nitrile Hydratase mutant Y72F complexed with Trimethylacetonitrile
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2009-10-06
Authors: Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3a8n: Crystal structure of the Tiam1 PHCCEx domain
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2009-10-07
Authors: Terawaki, S., Kitano, K., Mori, T., Zhai, Y., Higuchi, Y., Itoh, N., Watanabe, T., Kaibuchi, K., Hakoshima, T.
PDB entry 3a8o: Crystal structure of Nitrile Hydratase complexed with Trimethylacetamide
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2009-10-07
Authors: Yamanaka, Y., Hashimoto, K., Ohtaki, A., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3a8p: Crystal structure of the Tiam2 PHCCEx domain
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-10-07
Authors: Terawaki, S., Kitano, K., Mori, T., Zhai, Y., Higuchi, Y., Itoh, N., Watanabe, T., Kaibuchi, K., Hakoshima, T.
PDB entry 3a8q: Low-resolution crystal structure of the Tiam2 PHCCEx domain
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2009-10-07
Authors: Terawaki, S., Kitano, K., Mori, T., Zhai, Y., Higuchi, Y., Itoh, N., Watanabe, T., Kaibuchi, K., Hakoshima, T.
PDB entry 3a8r: The structure of the N-terminal regulatory domain of a plant NADPH oxidase
Classification: CALCIUM BINDING PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-10-07
Authors: Oda, T., Hashimoto, H., Kuwabara, N., Akashi, S., Hayashi, K., Kojima, C., Wong, H.L., Kawasaki, T., Shimamoto, K., Sato, M., Shimizu, T.
PDB entry 3a8s: Crystal structure analysis of the fluorescent protein KillerRed
Classification: FLUORESCENT PROTEIN
Source organism: Anthomedusae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-10-08
Authors: Sakai, N., Kitago, Y., Takemoto, K., Matsuda, T., Nagai, T.
PDB entry 3a8t: Plant adenylate isopentenyltransferase in complex with ATP
Classification: TRANSFERASE
Source organism: Humulus lupulus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2009-10-09
Authors: Chu, H.-M., Ko, T.-P., Wang, A.H.-J.
PDB entry 3a8u: Crystal Structure of omega-Amino Acid:Pyruvate Aminotransferase
Classification: TRANSFERASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-10-11
Authors: Watanabe, N., Sakabe, N., Sakabe, K., Sasaki, K.
PDB entry 3a8w: Crystal Structure of PKCiota kinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-10-11
Authors: Takimura, T., Kamata, K.
PDB entry 3a8x: Crystal Structure of PKCiota kinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-11
Authors: Takimura, T., Kamata, K.
PDB entry 3a8y: Crystal structure of the complex between the BAG5 BD5 and Hsp70 NBD
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-10-13
Authors: Arakawa, A., Handa, N., Ohsawa, N., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3a8z: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-10-15
Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T.
PDB entry 3a90: Crystal structure of hen egg white lysozyme soaked with 1mM RhCl3
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2009-10-15
Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T.
PDB entry 3a91: Crystal structure of hen egg white lysozyme soaked with 5mM RhCl3
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2009-10-15
Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T.
PDB entry 3a92: Crystal structure of hen egg white lysozyme soaked with 10mM RhCl3
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-10-15
Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T.
PDB entry 3a93: Crystal structure of hen egg white lysozyme soaked with 30mM RhCl3
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2009-10-15
Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T.
PDB entry 3a94: Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2009-10-15
Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T.
PDB entry 3a95: Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH3.8
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-10-15
Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T.
PDB entry 3a96: Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-15
Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T.
PDB entry 3a98: Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-10-21
Authors: Hanawa-Suetsugu, K., Kukimoto-Niino, M., Sekine, S., Ito, T., Mishima-Tsumagari, C., Terada, T., Shirouzu, M., Fukui, Y., Yokoyama, S.
PDB entry 3a99: Structure of PIM-1 kinase crystallized in the presence of P27KIP1 Carboxy-terminal peptide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-10-22
Authors: Morishita, D., Takami, M., Yoshikawa, S., Katayama, R., Sato, S., Kukimoto-Niino, M., Umehara, T., Shirouzu, M., Sekimizu, K., Yokoyama, S., Fujita, N.
PDB entry 3a9b: CcCel6C, a glycoside hydrolase family 6 enzyme, complexed with cellobiose
Classification: HYDROLASE
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2009-10-22
Authors: Liu, Y., Yoshida, M., Kurakata, Y., Miyazaki, T., Nishikawa, A., Tonozuka, T.
PDB entry 3a9c: Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate
Classification: ISOMERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-10-22
Authors: Nakamura, A., Fujihashi, M., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
PDB entry 3a9e: Crystal structure of a mixed agonist-bound RAR-alpha and antagonist-bound RXR-alpha heterodimer ligand binding domains
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2009-10-24
Authors: Sato, Y., Duclaud, S., Peluso-Iltis, C., Poussin, P., Moras, D., Rochel, N., Structural Proteomics in Europe (SPINE)
PDB entry 3a9f: Crystal structure of the C-terminal domain of cytochrome cz from Chlorobium tepidum
Classification: ELECTRON TRANSPORT
Source organism: Chlorobaculum tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2009-10-25
Authors: Hirano, Y., Higuchi, M., Azai, C., Oh-oka, H., Miki, K., Wang, Z.-Y.
PDB entry 3a9g: Crystal Structure of PQQ-dependent sugar dehydrogenase apo-form
Classification: OXIDOREDUCTASE
Source organism: Pyrobaculum aerophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2009-10-26
Authors: Sakuraba, H., Yokono, K., Yoneda, K., Ohshima, T.
PDB entry 3a9h: Crystal Structure of PQQ-dependent sugar dehydrogenase holo-form
Classification: OXIDOREDUCTASE
Source organism: Pyrobaculum aerophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-10-26
Authors: Sakuraba, H., Yokono, K., Yoneda, K., Ohshima, T.
PDB entry 3a9i: Crystal structure of homocitrate synthase from Thermus thermophilus complexed with Lys
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-28
Authors: Okada, T., Tomita, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3a9j: Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin
Classification: SIGNALING PROTEIN/METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2009-10-29
Authors: Sato, Y., Yoshikawa, A., Yamashita, M., Yamagata, A., Fukai, S.
PDB entry 3a9k: Crystal structure of the mouse TAB3-NZF in complex with Lys63-linked di-ubiquitin
Classification: SIGNALING PROTEIN/METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-10-29
Authors: Sato, Y., Yoshikawa, A., Yamashita, M., Yamagata, A., Fukai, S.
PDB entry 3a9l: Structure of Bacteriophage poly-gamma-glutamate hydrolase
Classification: HYDROLASE
Source organism: Bacillus phage phiNIT1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-30
Authors: Fujimoto, Z., Kimura, K.
PDB entry 3a9m: Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH9.0 coordinates)
Classification: OXYGEN TRANSPORT
Source organism: Tokunagayusurika akamusi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-30
Authors: Kuwada, T., Hasegawa, T., Takagi, T., Shishikura, F.
PDB entry 3a9q: Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4
Classification: OXIDOREDUCTASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.896 Å
Deposited: 2009-11-05
Authors: Masuda, T., Goto, F., Yoshihara, T., Mikami, B.
PDB entry 3a9r: X-ray Structures of Bacillus pallidus D-Arabinose IsomeraseComplex with (4R)-2-METHYLPENTANE-2,4-DIOL
Classification: ISOMERASE
Source organism: Geobacillus pallidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2009-11-05
Authors: Takeda, K., Yoshida, H., Izumori, K., Kamitori, S.
PDB entry 3a9s: X-ray Structure of Bacillus pallidus D-Arabinose Isomerase Complex with Glycerol
Classification: ISOMERASE
Source organism: Geobacillus pallidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-11-05
Authors: Takeda, K., Yoshida, H., Izumori, K., Kamitori, S.
PDB entry 3a9t: X-ray Structure of Bacillus pallidus D-Arabinose Isomerase Complex with L-Fucitol
Classification: ISOMERASE
Source organism: Geobacillus pallidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2009-11-05
Authors: Takeda, K., Yoshida, H., Izumori, K., Kamitori, S.
PDB entry 3a9u: Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase
Classification: LIGASE
Source organism: Populus tomentosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-11-06
Authors: Hu, Y.
PDB entry 3a9v: Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase
Classification: LIGASE
Source organism: Populus tomentosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-11-06
Authors: Hu, Y.
PDB entry 3a9w: Crystal structure of L-Threonine bound L-Threonine dehydrogenase (Y137F) from Hyperthermophilic Archaeon Thermoplasma volcanium
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-11-07
Authors: Yoneda, K., Sakuraba, H., Ohshima, T.
PDB entry 3a9x: Crystal structure of rat selenocysteine lyase
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-11-08
Authors: Omi, R., Hirotsu, K.
PDB entry 3a9y: Crystal structure of rat selenocysteine lyase in complex with L-cysteine
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-11-09
Authors: Omi, R., Hirotsu, K.
PDB entry 3a9z: Crystal structure of ras selenocysteine lyase in complex with selenopropionate
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2009-11-09
Authors: Omi, R., Hirotsu, K.
PDB entry 3aa0: Crystal structure of Actin Capping Protein in complex with the Cp-binding motif derived from CARMIL
Classification: PROTEIN BINDING
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-11-11
Authors: Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
PDB entry 3aa1: Crystal structure of Actin capping protein in complex with the Cp-binding motif derived from CKIP-1
Classification: PROTEIN BINDING
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-11-11
Authors: Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
PDB entry 3aa2: A52I E. coli RNase HI
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-11-11
Authors: Takano, K.
PDB entry 3aa3: A52L E. coli RNase HI
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-11-11
Authors: Takano, K.
PDB entry 3aa4: A52V E.coli RNase HI
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2009-11-11
Authors: Takano, K.
PDB entry 3aa5: A52F E.coli RNase HI
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-11-11
Authors: Takano, K.
PDB entry 3aa6: Crystal structure of Actin capping protein in complex with the Cp-binding motif derived from CD2AP
Classification: PROTEIN BINDING
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-11-11
Authors: Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
PDB entry 3aa7: Crystal structure of Actin capping protein
Classification: PROTEIN BINDING
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-11-11
Authors: Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
PDB entry 3aa8: Crystal Structure Analysis of the Mutant CutA1 (S11V/E61V) from E. coli
Classification: UNKNOWN FUNCTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-11-12
Authors: Matsuura, Y., Tanaka, T., Bagautdinov, B., Kunishima, N., Yutani, K.
PDB entry 3aa9: Crystal Structure Analysis of the Mutant CutA1 (E61V) from E. coli
Classification: UNKNOWN FUNCTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-11-12
Authors: Matsuura, Y., Tanaka, T., Bagautdinov, B., Kunishima, N., Yutani, K.
PDB entry 3aaa: Crystal Structure of Actin capping protein in complex with V-1
Classification: PROTEIN BINDING
Source organism: Gallus gallus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-11-12
Authors: Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
PDB entry 3aab: Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form I crystal
Classification: CHAPERONE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.851 Å
Deposited: 2009-11-13
Authors: Takeda, K., Hayashi, T., Abe, T., Hirano, Y., Hanazono, Y., Yohda, M., Miki, K.
PDB entry 3aac: Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form II crystal
Classification: CHAPERONE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-11-13
Authors: Takeda, K., Hayashi, T., Abe, T., Hirano, Y., Hanazono, Y., Yohda, M., Miki, K.
PDB entry 3aad: Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction
Classification: TRANSCRIPTION/CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2009-11-16
Authors: Akai, Y., Adachi, N., Hayashi, Y., Eitoku, M., Sano, N., Natsume, R., Kudo, N., Tanokura, M., Senda, T., Horikoshi, M.
PDB entry 3aae: Crystal structure of Actin capping protein in complex with CARMIL fragment
Classification: PROTEIN BINDING
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2009-11-16
Authors: Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
PDB entry 3aaf: Structure of WRN RQC domain bound to double-stranded DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-11-16
Authors: Kitano, K., Hakoshima, T.
PDB entry 3aag: Crystal structure of C. jejuni pglb C-terminal domain
Classification: TRANSFERASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-11-16
Authors: Maita, N., Kohda, D.
PDB entry 3aai: X-ray crystal structure of CsoR from Thermus thermophilus HB8
Classification: TRANSCRIPTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-11-17
Authors: Sakamoto, K., Agari, Y., Shinkai, A., Kuramitsu, S.
PDB entry 3aaj: Crystal structure of Ca2+-bound form of des3-23ALG-2deltaGF122
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-11-19
Authors: Suzuki, H., Inuzuka, T., Kawasaki, M., Shibata, H., Wakatsuki, S., Maki, M.
PDB entry 3aak: Crystal structure of Zn2+-bound form of des3-20ALG-2F122A
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-11-19
Authors: Inuzuka, T., Suzuki, H., Kawasaki, M., Shibata, H., Wakatsuki, S., Maki, M.
PDB entry 3aal: Crystal Structure of endonuclease IV from Geobacillus kaustophilus
Classification: HYDROLASE
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-11-20
Authors: Asano, R., Ishikawa, H., Nakane, S., Nakagawa, N., Kuramitsu, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3aam: Crystal structure of endonuclease IV from Thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2009-11-20
Authors: Asano, R., Ishikawa, H., Nakane, S., Baba, S., Nakagawa, N., Kuramitsu, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3aap: Crystal Structure of Lp1NTPDase from Legionella pneumophila
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-11-24
Authors: Vivian, J.P., Beddoe, T., Rossjohn, J.
PDB entry 3aaq: Crystal structure of Lp1NTPDase from Legionella pneumophila in complex with the inhibitor ARL 67156
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-11-24
Authors: Vivian, J.P., Beddoe, T., Rossjohn, J.
PDB entry 3aar: Crystal structure of Lp1NTPDase from Legionella pneumophila in complex with AMPPNP
Classification: HYDROLASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2009-11-24
Authors: Ge, H., Vivian, J.P., Beddoe, T., Rossjohn, J.
PDB entry 3aas: Bovine beta-trypsin bound to meta-guanidino schiff base copper (II) chelate
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-11-26
Authors: Iyaguchi, D., Kawano, S., Toyota, E.
PDB entry 3aat: ACTIVITY AND STRUCTURE OF THE ACTIVE-SITE MUTANTS R386Y AND R386F OF ESCHERICHIA COLI ASPARTATE AMINOTRANSFERASE
Classification: TRANSFERASE(AMINOTRANSFERASE)
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1990-12-06
Authors: Danishefsky, A.T., Ringe, D., Petsko, G.A.
PDB entry 3aau: Bovine beta-trypsin bound to meta-diguanidino schiff base copper (II) chelate
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-11-26
Authors: Iyaguchi, D., Kawano, S., Toyota, E.
PDB entry 3aav: Bovine beta-trypsin bound to meta-diamidino schiff base copper (II) chelate
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-11-26
Authors: Iyaguchi, D., Kawano, S., Toyota, E.
PDB entry 3aaw: Crystal structure of aspartate kinase from Corynebacterium glutamicum in complex with lysine and threonine
Classification: TRANSFERASE
Source organism: Corynebacterium crenatum; Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-11-27
Authors: Yoshida, A., Tomita, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3aax: Crystal structure of probable thiosulfate sulfurtransferase cysa3 (RV3117) from Mycobacterium tuberculosis: monoclinic FORM
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-11-28
Authors: Sankaranarayanan, R., Witholt, S.J., Cherney, M.M., Garen, C.R., Cherney, L.T., James, M.N.G., TB Structural Genomics Consortium (TBSGC)
PDB entry 3aay: Crystal structure of probable thiosulfate sulfurtransferase CYSA3 (RV3117) from Mycobacterium tuberculosis: orthorhombic form
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-11-28
Authors: Sankaranarayanan, R., Witholt, S.J., Cherney, M.M., Garen, C.R., Cherney, L.T., James, M.N.G., TB Structural Genomics Consortium (TBSGC)
PDB entry 3aaz: Crystal structure of the humanized recombinant Fab fragment of a murine; antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-11-28
Authors: Streltsov, V.A.
PDB entry 3ab0: Crystal structure of complex of the Bacillus anthracis major spore surface protein BclA with ScFv antibody fragment
Classification: IMMUNE SYSTEM
Source organism: Bacillus anthracis; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2009-11-28
Authors: Streltsov, V.A.
PDB entry 3ab1: Crystal Structure of Ferredoxin NADP+ Oxidoreductase
Classification: OXIDOREDUCTASE
Source organism: Chlorobaculum tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2009-11-30
Authors: Muraki, N., Seo, D., Kurisu, G.
PDB entry 3ab2: Crystal structure of aspartate kinase from Corynebacterium glutamicum in complex with threonine
Classification: TRANSFERASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2009-11-30
Authors: Yoshida, A., Tomita, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3ab3: Crystal structure of p115RhoGEF RGS domain in complex with G alpha 13
Classification: SIGNALING PROTEIN/MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-11-30
Authors: Kukimoto-Niino, M., Mishima, C., Shirouzu, M., Kozasa, T., Yokoyama, S.
PDB entry 3ab4: Crystal structure of feedback inhibition resistant mutant of aspartate kinase from Corynebacterium glutamicum in complex with lysine and threonine
Classification: TRANSFERASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2009-11-30
Authors: Yoshida, A., Tomita, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3ab5: Crystal structure of the 2Fe 2S Ferredoxin from Cyanidioschyzon merolae
Classification: ELECTRON TRANSPORT
Source organism: Cyanidioschyzon merolae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2009-12-01
Authors: Morimoto, Y., Imai, T., Ozawa, Y.
PDB entry 3ab6: Crystal structure of NAG3 bound lysozyme from Meretrix lusoria
Classification: HYDROLASE
Source organism: Meretrix lusoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2009-12-01
Authors: Yoneda, K., Kuwano, Y., Araki, T.
PDB entry 3ab7: Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8
Classification: UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2009-12-01
Authors: Goto, M., Iino, H., Shimizu, N., Kuramitsu, S.
PDB entry 3ab8: Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 complexed with ATPs.
Classification: UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-12-01
Authors: Goto, M., Iino, H., Shimizu, N., Kuramitsu, S.
PDB entry 3ab9: Crystal Structure of lipoylated E. coli H-protein (reduced form)
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2009-12-04
Authors: Okamura-Ikeda, K., Maita, N.
PDB entry 3aba: Crystal structure of CYP105P1 in complex with filipin I
Classification: OXIDOREDUCTASE/ANTIBIOTIC
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-12-04
Authors: Xu, L.H., Fushinobu, S., Takamatsu, S., Wakagi, T., Ikeda, H., Shoun, H.
PDB entry 3abb: Crystal structure of CYP105D6
Classification: OXIDOREDUCTASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-12-04
Authors: Xu, L.H., Fushinobu, S., Takamatsu, S., Wakagi, T., Ikeda, H., Shoun, H.
PDB entry 3abd: Structure of human REV7 in complex with a human REV3 fragment in a monoclinic crystal
Classification: CELL CYCLE/REPLICATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-12-07
Authors: Hara, K., Hashimoto, H., Murakumo, Y., Kobayashi, S., Kogame, T., Unzai, S., Akashi, S., Takeda, S., Shimizu, T., Sato, M.
PDB entry 3abe: Structure of human REV7 in complex with a human REV3 fragment in a tetragonal crystal
Classification: CELL CYCLE/REPLICATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-12-07
Authors: Hara, K., Hashimoto, H., Murakumo, Y., Kobayashi, S., Kogame, T., Unzai, S., Akashi, S., Takeda, S., Shimizu, T., Sato, M.
PDB entry 3abf: Crystal Structure of a 4-Oxalocrotonate Tautomerase Homologue (TTHB242)
Classification: ISOMERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2009-12-10
Authors: Kida, H., Miki, K.
PDB entry 3abg: X-ray Crystal Analysis of Bilirubin Oxidase from Myrothecium verrucaria at 2.3 angstrom Resolution using a Twin Crystal
Classification: OXIDOREDUCTASE
Source organism: Albifimbria verrucaria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-12-10
Authors: Mizutani, K., Toyoda, M., Sagara, K., Takahashi, N., Sato, A., Kamitaka, Y., Tsujimura, S., Nakanishi, Y., Sugiura, T., Yamaguchi, S., Kano, K., Mikami, B.
PDB entry 3abh: Crystal structure of the EFC/F-BAR domain of human PACSIN2/Syndapin II (2.0 A)
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-12-11
Authors: Shimada, A., Shirouzu, M., Hanawa-Suetsugu, K., Terada, T., Umehara, T., Suetsugu, S., Yamamoto, M., Yokoyama, S.
PDB entry 3abi: Crystal Structure of L-Lysine Dehydrogenase from Hyperthermophilic Archaeon Pyrococcus horikoshii
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2009-12-14
Authors: Yoneda, K., Sakuraba, H., Fukuda, J., Ohshima, T.
PDB entry 3abk: Bovine heart cytochrome c oxidase at the NO-bound fully reduced state (50K)
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-12-16
Authors: Ohta, K., Muramoto, K., Shinzawa-Itoh, K., Yamashita, E., Yoshikawa, S., Tsukihara, T.
PDB entry 3abl: Bovine heart cytochrome c oxidase at the fully oxidized state (15-s X-ray exposure dataset)
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-12-16
Authors: Aoyama, H., Muramoto, K., Shinzawa-Itoh, K., Yamashita, E., Tsukihara, T., Ogura, T., Yoshikawa, S.
PDB entry 3abm: Bovine heart cytochrome c oxidase at the fully oxidized state (200-s X-ray exposure dataset)
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-12-16
Authors: Aoyama, H., Muramoto, K., Shinzawa-Itoh, K., Yamashita, E., Tsukihara, T., Ogura, T., Yoshikawa, S.
PDB entry 3abn: Crystal structure of (Pro-Pro-Gly)4-Hyp-Asp-Gly-(Pro-Pro-Gly)4 at 1.02 A
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2009-12-16
Authors: Okuyama, K., Shimura, M., Kawaguchi, T., Noguchi, K., Mizuno, K., Bachinger, H.P.
PDB entry 3abo: Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-Cbl and ethanolamine
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-12-21
Authors: Shibata, N.
PDB entry 3abq: Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-Cbl and 2-amino-1-propanol
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-12-21
Authors: Shibata, N.
PDB entry 3abr: Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-Cbl (substrate-free form)
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-12-21
Authors: Shibata, N.
PDB entry 3abs: Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with adeninylpentylcobalamin and ethanolamine
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2009-12-21
Authors: Shibata, N.
PDB entry 3abt: Crystal Structure of LSD1 in complex with trans-2-pentafluorophenylcyclopropylamine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2009-12-21
Authors: Mimasu, S., Umezawa, N., Sato, S., Higuchi, T., Umehara, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3abu: Crystal Structure of LSD1 in complex with a 2-PCPA derivative, S1201
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-12-21
Authors: Mimasu, S., Umezawa, N., Sato, S., Higuchi, T., Umehara, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3abv: Crystal structure of porcine heart mitochondrial complex II bound with N-Biphenyl-3-yl-2-trifluoromethyl-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2009-12-22
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3abw: Crystal structure of pharaonis halorhodopsin in complex with azide ion
Classification: MEMBRANE PROTEIN
Source organism: Natronomonas pharaonis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-12-24
Authors: Kouyama, T., Kanada, S.
PDB entry 3abx: CcCel6C, a glycoside hydrolase family 6 enzyme, complexed with p-nitrophenyl beta-D-cellotrioside
Classification: HYDROLASE
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-12-24
Authors: Liu, Y., Yoshida, M., Kurakata, Y., Miyazaki, T., Nishikawa, A., Tonozuka, T.
PDB entry 3abz: Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus
Classification: HYDROLASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2009-12-25
Authors: Yoshida, E., Hidaka, M., Fushinobu, S., Katayama, T., Kumagai, H.
PDB entry 3ac0: Crystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose
Classification: HYDROLASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2009-12-25
Authors: Yoshida, E., Hidaka, M., Fushinobu, S., Katayama, T., Kumagai, H.
PDB entry 3ac1: Crystal structure of pyrazin derivative bound to the kinase domain of Human LCK, (Auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2009-12-28
Authors: Tsuji, E.
PDB entry 3ac2: Crystal structure of pyrazolo pyrimidine derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-12-28
Authors: Tsuji, E.
PDB entry 3ac3: Crystal structure of pyrazolo pyrimidine derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2009-12-28
Authors: Tsuji, E.
PDB entry 3ac4: Crystal structure of triazolo pyrimidine derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-12-28
Authors: Tsuji, E.
PDB entry 3ac5: Crystal structure of triazolo pyrimidine derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-12-28
Authors: Tsuji, E.
PDB entry 3ac8: Crystal structure of pyrazolo pyrimidine derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-12-29
Authors: Tsuji, E.
PDB entry 3ac9: Crystal structure of human NUDT5 complexed with 8-oxo-dGDP and manganese
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-12-30
Authors: Arimori, T., Yamagata, Y.
PDB entry 3aca: Crystal structure of human NUDT5 complexed with 8-oxo-dADP and manganese
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-12-30
Authors: Arimori, T., Yamagata, Y.
PDB entry 3acb: Crystal structure of hypoxanthine-guanine phosphoribosyltransferase from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2009-12-30
Authors: Kanagawa, M., Baba, S., Hirotsu, K., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3acc: Crystal structure of hypoxanthine-guanine phosphoribosyltransferase with GMP from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2009-12-30
Authors: Kanagawa, M., Baba, S., Hirotsu, K., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3acd: Crystal structure of hypoxanthine-guanine phosphoribosyltransferase with IMP from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2009-12-30
Authors: Kanagawa, M., Baba, S., Hirotsu, K., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3acf: Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in a ligand-free form
Classification: HYDROLASE
Source organism: Clostridium josui
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-01-04
Authors: Tsukimoto, K., Takada, R., Araki, Y., Suzuki, K., Karita, S., Wakagi, T., Shoun, H., Watanabe, T., Fushinobu, S.
PDB entry 3acg: Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellobiose
Classification: HYDROLASE
Source organism: Clostridium josui
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2010-01-04
Authors: Tsukimoto, K., Takada, R., Araki, Y., Suzuki, K., Karita, S., Wakagi, T., Shoun, H., Watanabe, T., Fushinobu, S.
PDB entry 3ach: Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellotetraose
Classification: HYDROLASE
Source organism: Clostridium josui
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2010-01-04
Authors: Tsukimoto, K., Takada, R., Araki, Y., Suzuki, K., Karita, S., Wakagi, T., Shoun, H., Watanabe, T., Fushinobu, S.
PDB entry 3aci: Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellopentaose
Classification: HYDROLASE
Source organism: Clostridium josui
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-01-04
Authors: Tsukimoto, K., Takada, R., Araki, Y., Suzuki, K., Karita, S., Wakagi, T., Shoun, H., Watanabe, T., Fushinobu, S.
PDB entry 3acj: Crystal structure of imidazo pyrimidine derivative bound to the kinase domain of human LCK, (Auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-01-05
Authors: Tsuji, E.
PDB entry 3ack: Crystal structure of Pyrrolo pyrazine derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-01-05
Authors: Tsuji, E.
PDB entry 3acl: Crystal Structure of Human Pirin in complex with Triphenyl Compound
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2010-01-05
Authors: Okumura, H., Miyazaki, I., Simizu, S., Osada, H.
PDB entry 3aco: Crystal structure of the EFC/F-BAR domain of human PACSIN2/Syndapin II (2.7 A)
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2010-01-07
Authors: Shimada, A., Shirouzu, M., Hanawa-Suetsugu, K., Terada, T., Umehara, T., Suetsugu, S., Yamamoto, M., Yokoyama, S.
PDB entry 3acp: Crystal Structure of Yeast Rpn14, a Chaperone of the 19S Regulatory Particle of the Proteasome
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-01-08
Authors: Kim, S., Saeki, Y., Suzuki, A., Takagi, K., Fukunaga, K., Yamane, T., Kato, K., Tanaka, K., Mizushima, T.
PDB entry 3acs: Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase W488F mutant
Classification: TRANSFERASE
Source organism: Cellvibrio gilvus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2010-01-08
Authors: Hidaka, M., Arai, T., Fushinobu, S.
PDB entry 3act: Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Histidine mutant
Classification: TRANSFERASE
Source organism: Cellvibrio gilvus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2010-01-08
Authors: Hidaka, M., Hayashi, M.A., Fushinobu, S.
PDB entry 3acw: Crystal structure of the C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus complexed with BPH-651
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2010-01-13
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J., Oldfield, E.