LiteFold/PDB huggingface dataset:
PDB entry 7f75: Cryo-EM structure of Spx-dependent transcription activation complex
Classification: TRANSCRIPTION/DNA
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-06-28
Authors: Lin, W., Feng, Y., Shi, J.
PDB entry 7f76: Crystal Structure of FMN-dependent NADPH-quinone reductase (azoR) from Bacillus cohnii
Classification: OXIDOREDUCTASE
Source organism: Bacillus cohnii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2021-06-28
Authors: Yoneda, K., Sakuraba, H., Ohshima, T.
PDB entry 7f77: Crystal structure of glutamate dehydrogenase 3 from Candida albicans
Classification: OXIDOREDUCTASE
Source organism: Candida albicans SC5314
Experimental method: X-RAY DIFFRACTION
Resolution: 3.086 Å
Deposited: 2021-06-28
Authors: Li, N., Wang, W., Zeng, X., Liu, M., Li, M., Li, C., Wang, M.
PDB entry 7f79: Crystal structure of glutamate dehydrogenase 3 from Candida albicans in complex with alpha-ketoglutarate and NADPH
Classification: OXIDOREDUCTASE
Source organism: Candida albicans SC5314
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-06-28
Authors: Li, N., Wang, W., Zeng, X., Liu, M., Li, M., Li, C., Wang, M.
PDB entry 7f7a: Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS bound to Adenine at pH 9
Classification: HYDROLASE
Source organism: Sphingobium sp. 20006FA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-06-28
Authors: Gaur, N.K., Kumar, A., Sunder, S., Mukhopadhyaya, R., Makde, R.D.
PDB entry 7f7b: Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS bound to BIS-TRIS at pH 5.5
Classification: HYDROLASE
Source organism: Sphingobium sp. 20006FA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2021-06-28
Authors: Gaur, N.K., Kumar, A., Sunder, S., Mukhopadhyaya, R., Makde, R.D.
PDB entry 7f7c: Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS bound to Adenosine at pH 5.5
Classification: HYDROLASE
Source organism: Sphingobium sp. 20006FA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-06-28
Authors: Gaur, N.K., Kumar, A., Sunder, S., Mukhopadhyaya, R., Makde, R.D.
PDB entry 7f7d: Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS bound to Adenosine at pH 5.5
Classification: HYDROLASE
Source organism: Sphingobium sp. 20006FA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-06-28
Authors: Gaur, N.K., Kumar, A., Sunder, S., Mukhopadhyaya, R., Makde, R.D.
PDB entry 7f7e: SARS-CoV-2 S protein RBD in complex with A5-10 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2021-06-29
Authors: Dou, Y., Wang, X., Wang, K., Liu, P., Lu, B.
PDB entry 7f7f: Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in yeast lipids with beryllium fluoride (resting state)
Classification: LIPID TRANSPORT
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2021-06-29
Authors: Xu, J., He, Y., Wu, X., Li, L.
PDB entry 7f7g: a linear Peptide Inhibitors in complex with GK domain
Classification: PEPTIDE BINDING PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.446 Å
Deposited: 2021-06-29
Authors: Shang, Y., Huang, X., Li, X., Zhang, M.
PDB entry 7f7h: SARS-CoV-2 S protein RBD in complex with A8-1 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2021-06-29
Authors: Dou, Y., Wang, X., Wang, K., Liu, P., Lu, B.
PDB entry 7f7i: Stapled Peptide Inhibitor in complex with PSD95 GK domain
Classification: PEPTIDE BINDING PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.595 Å
Deposited: 2021-06-29
Authors: Shang, Y., Huang, X., Li, X., Zhang, M.
PDB entry 7f7j: The crystal structure of AKR4C17
Classification: OXIDOREDUCTASE
Source organism: Echinochloa colona
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-06-30
Authors: Li, H., Yang, Y., Hu, Y., Chen, C.-C., Huang, J.-W., Min, J., Dai, L., Guo, R.-T.
PDB entry 7f7k: Crystal structure of AKR4C17 bound with NADP+
Classification: OXIDOREDUCTASE
Source organism: Echinochloa colona
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2021-06-30
Authors: Li, H., Yang, Y., Hu, Y., Chen, C.-C., Huang, J.-W., Min, J., Dai, L., Guo, R.-T.
PDB entry 7f7l: Crystal structure of AKR4C17 bound with NADPH
Classification: OXIDOREDUCTASE
Source organism: Echinochloa colona
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-06-30
Authors: Li, H., Yang, Y., Hu, Y., Chen, C.-C., Huang, J.-W., Min, J., Dai, L., Guo, R.-T.
PDB entry 7f7m: AKR4C17 in complex with NADP+ and glyphosate
Classification: OXIDOREDUCTASE
Source organism: Echinochloa colona
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2021-06-30
Authors: Li, H., Yang, Y., Hu, Y., Chen, C.-C., Huang, J.-W., Min, J., Dai, L., Guo, R.-T.
PDB entry 7f7n: Solution structure of apo-WhiB4 from Mycobacterium tuberculosis
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: SOLUTION NMR
Deposited: 2021-06-30
Authors: Xia, B., Duan, B.
PDB entry 7f7o: APC-Asef FP assay tracer
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-06-30
Authors: Yang, X., Zhang, J.
PDB entry 7f7p: AcrIIC4
Classification: IMMUNE SYSTEM
Source organism: Haemophilus parainfluenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2021-06-30
Authors: Kim, G.E., Park, H.H.
PDB entry 7f7q: Enterococcus faecalis GH31 alpha-N-acetylgalactosaminidase D455A in complex with p-nitrophenyl alpha-N-acetylgalactosaminide
Classification: HYDROLASE
Source organism: Enterococcus faecalis ATCC 10100
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2021-06-30
Authors: Miyazaki, T.
PDB entry 7f7r: Enterococcus faecalis GH31 alpha-N-acetylgalactosaminidase D455N in complex with Tn antigen
Classification: HYDROLASE
Source organism: Enterococcus faecalis ATCC 10100
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2021-06-30
Authors: Miyazaki, T.
PDB entry 7f7w: JAK2-JH2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-06-30
Authors: Niu, L.
PDB entry 7f7x: Protein complex between phosphorylated ubiquitin and Ubqln2 UBA
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2021-06-30
Authors: Qin, L.Y., Dong, X., Tang, C.
PDB entry 7f7y: Crystal Structure of protein PitB from pilus islet-2 of Streptococcus pneumoniae
Classification: CELL ADHESION
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2021-06-30
Authors: Yadav, R.K., Krishnan, V.
PDB entry 7f80: Co-crystal structure of Inhibitor compound MA-211 in complex with human PPARdelta LBD
Classification: PROTEIN BINDING/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-06-30
Authors: Lakshminarasimhan, A., Rani, S.T., Senaiar, R.S., Krishnamurthy, N.
PDB entry 7f81: Structure of the bacterial cellulose synthase subunit Z from Enterobacter sp. CJF-002
Classification: HYDROLASE
Source organism: Enterobacter sp. CJF-002
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-06-30
Authors: Fujiwara, T., Fujishima, A., Yao, M.
PDB entry 7f82: Structure of the bacterial cellulose synthase subunit Z in complex with cellooligosaccharides from Enterobacter sp. CJF-002
Classification: HYDROLASE
Source organism: Enterobacter sp. CJF-002
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2021-06-30
Authors: Fujiwara, T., Fujishima, A., Yao, M.
PDB entry 7f83: Crystal Structure of a receptor in Complex with inverse agonist
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2021-07-01
Authors: Xu, Z., Shao, Z.
PDB entry 7f84: Crystal structure of CRISPR-associated Cas2c of Leptospira interrogans
Classification: DNA BINDING PROTEIN
Source organism: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-07-01
Authors: Gogoi, P., Anand, V., Prabhakaran, H.S., Kumar, M., Kanaujia, S.P.
PDB entry 7f86: Crystal structure of Phycoerythrin from Halomicronema Sp. R31DM
Classification: PHOTOSYNTHESIS
Source organism: Halomicronema sp. R31DM
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2021-07-01
Authors: Patel, S.N., Gupta, G.D., Sonani, R.R., Singh, N.K., Kumar, V., Madamwar, D.
PDB entry 7f87: Crystal structure of housekeeping sortase SrtA bound with self derived tripeptide from Lactobacillus rhamnosus GG
Classification: TRANSFERASE
Source organism: Lacticaseibacillus rhamnosus; Lactobacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2021-07-01
Authors: Pratap, S., Krishnan, V.
PDB entry 7f88: Crystal structure of GH19 chitinase lacking the third loop structure
Classification: HYDROLASE
Source organism: Gemmabryum coronatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-07-01
Authors: Ohnuma, T., Numata, T.
PDB entry 7f8a: Crystal structure of rRNA methyltransferase Erm38
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-01
Authors: Goh, B.C., Lescar, J.
PDB entry 7f8b: Crystal structure of rRNA methyltransferase Erm38 in complex with SAM
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.248 Å
Deposited: 2021-07-01
Authors: Goh, B.C., Lescar, J.
PDB entry 7f8c: Crystal structure of rRNA methyltransferase Erm38 in complex with sinefungin
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.248 Å
Deposited: 2021-07-01
Authors: Goh, B.C., Lescar, J.
PDB entry 7f8d: Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) G218Y mutant
Classification: OXIDOREDUCTASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-07-02
Authors: Shimozawa, Y., Himiyama, T., Nakamura, T., Nishiya, Y.
PDB entry 7f8e: Crystal structure of YggS from Fusobacterium nucleatum
Classification: BIOSYNTHETIC PROTEIN
Source organism: Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2021-07-02
Authors: Wang, L., Chen, Y., Bu, T., Bai, X.
PDB entry 7f8f: Roadblock from Odinarchaeota LCB_4
Classification: UNKNOWN FUNCTION
Source organism: Candidatus Odinarchaeota archaeon LCB_4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-07-02
Authors: Robinson, R.C., Akil, C.
PDB entry 7f8g: Structure-activity relationship studies of allosteric inhibitors of EYA2 tyrosine phosphatase
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.491 Å
Deposited: 2021-07-02
Authors: Anantharajan, J., Baburajendran, N.
PDB entry 7f8h: Structure-activity relationship studies of allosteric inhibitors of EYA2 tyrosine phosphatase
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2021-07-02
Authors: Anantharajan, J., Baburajendran, N.
PDB entry 7f8i: Crystal structure of HPV6 L1 pentamer
Classification: VIRAL PROTEIN
Source organism: Human papillomavirus type 6
Experimental method: X-RAY DIFFRACTION
Resolution: 3.366 Å
Deposited: 2021-07-02
Authors: Wang, Z.P., Wang, D.N., Gu, Y., Li, S.W.
PDB entry 7f8j: Cryo-EM structure of human pannexin-1 in a nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-02
Authors: Kuzuya, M., Hirano, H., Hayashida, K., Watanabe, M., Kobayashi, K., Tani, K., Fujiyoshi, Y., Oshima, A.
PDB entry 7f8k: Room temperature structure of bacterial copper amine oxidase determined by serial femtosecond crystallography
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-02
Authors: Murakawa, T., Okajima, T.
PDB entry 7f8l: Crystal structure of Bat coronavirus RaTG13 ORF8 accessory protein
Classification: VIRAL PROTEIN
Source organism: Bat coronavirus RaTG13
Experimental method: X-RAY DIFFRACTION
Resolution: 1.762 Å
Deposited: 2021-07-02
Authors: Chen, X., Zhou, Z., Chen, S.
PDB entry 7f8m: Roadblock from Thorarchaeota SMTZ1-45
Classification: UNKNOWN FUNCTION
Source organism: Candidatus Thorarchaeota archaeon SMTZ1-45
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2021-07-02
Authors: Robinson, R.C., Tran, L.T.
PDB entry 7f8n: Human pannexin-1 showing a conformational change in the N-terminal domain and blocked pore
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-02
Authors: Kuzuya, M., Hirano, H., Hayashida, K., Watanabe, M., Kobayashi, K., Tani, K., Fujiyoshi, Y., Oshima, A.
PDB entry 7f8o: Cryo-EM structure of the C-terminal deletion mutant of human PANX1 in a nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-02
Authors: Kuzuya, M., Hirano, H., Hayashida, K., Watanabe, M., Kobayashi, K., Tani, K., Fujiyoshi, Y., Oshima, A.
PDB entry 7f8p: Crystal structure of the Mycobacterium tuberculosis L,D-transpeptidase-2 (LdtMt2) with new carbapenem drug T203
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-07-02
Authors: Kumar, P., Lamichhane, G.
PDB entry 7f8r: Crystal structure of human soluble CLIC1 with catalytic cysteine (Cys24) in sulphonic acid form.
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2021-07-02
Authors: Kumar, A., Das, B.K., Sreeshma, N.S., Arockiasamy, A.
PDB entry 7f8s: Pennisetum glaucum (Pearl millet) dehydroascorbate reductase (DHAR) with catalytic cysteine (Cy20) in sulphenic and sulfinic acid forms.
Classification: OXIDOREDUCTASE
Source organism: Cenchrus americanus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2021-07-02
Authors: Das, B.K., Kumar, A., Sreeshma, N.S., Arockiasamy, A.
PDB entry 7f8t: Re-refinement of the 2XRY X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei
Classification: LYASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-07-02
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7f8u: Crystal structure of the cholecystokinin receptor CCKAR in complex with lintitript
Classification: STRUCTURAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-07-02
Authors: Zhang, X., He, C., Wang, M., Zhou, Q., Yang, D., Zhu, Y., Wu, B., Zhao, Q.
PDB entry 7f8v: Cryo-EM structure of the cholecystokinin receptor CCKBR in complex with gastrin-17 and Gi
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-02
Authors: Zhang, X., He, C., Wang, M., Zhou, Q., Yang, D., Zhu, Y., Wu, B., Zhao, Q.
PDB entry 7f8w: Cryo-EM structure of the cholecystokinin receptor CCKBR in complex with gastrin-17 and Gq
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-02
Authors: Zhang, X., He, C., Wang, M., Zhou, Q., Yang, D., Zhu, Y., Wu, B., Zhao, Q.
PDB entry 7f8x: Crystal structure of the cholecystokinin receptor CCKAR in complex with NN9056
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia virus T4; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-02
Authors: Zhang, X., He, C., Wang, M., Zhou, Q., Yang, D., Zhu, Y., Wu, B., Zhao, Q.
PDB entry 7f8y: Crystal structure of the cholecystokinin receptor CCKAR in complex with devazepide
Classification: STRUCTURAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-07-02
Authors: Zhang, X., He, C., Wang, M., Zhou, Q., Yang, D., Zhu, Y., Wu, B., Zhao, Q.
PDB entry 7f8z: RNA kink-turn motif with 2-aminopurine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-03
Authors: Kondo, J., Miyauchi, T.
PDB entry 7f90: Crystal structure of SARS auxiliary protein in complex with human nuclear protein
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2021-07-03
Authors: Gao, X., Cui, S.
PDB entry 7f91: SeMet derivative of Thrombocorticin
Classification: SUGAR BINDING PROTEIN
Source organism: Corticium sp. (in: Fungi)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.401 Å
Deposited: 2021-07-03
Authors: Kageyama, H., Onodera, K., Sakai, R., Tanaka, Y.
PDB entry 7f92: Structure of connexin43/Cx43/GJA1 gap junction intercellular channel in LMNG/CHS detergents at pH ~8.0
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-03
Authors: Lee, H.J., Cha, H.J., Jeong, H., Lee, S.N., Lee, C.W., Woo, J.S.
PDB entry 7f93: Structure of connexin43/Cx43/GJA1 gap junction intercellular channel in nanodiscs with soybean lipids at pH ~8.0
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-03
Authors: Lee, H.J., Cha, H.J., Jeong, H., Lee, S.N., Lee, C.W., Woo, J.S.
PDB entry 7f94: Structure of C-terminal truncated connexin43/Cx43/GJA1 gap junction intercellular channel with two conformationally different hemichannels
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-03
Authors: Lee, H.J., Cha, H.J., Jeong, H., Lee, S.N., Lee, C.W., Woo, J.S.
PDB entry 7f96: Plasmodium falciparum Prolyl-tRNA Synthetase (PfPRS) in Complex with L-proline and compound L95
Classification: LIGASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.577 Å
Deposited: 2021-07-04
Authors: Mishra, S., Malhotra, N., Yogavel, M., Sharma, A.
PDB entry 7f97: Plasmodium falciparum Prolyl-tRNA Synthetase (PfPRS) in Complex with L-proline and compound L97
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.394 Å
Deposited: 2021-07-04
Authors: Mishra, S., Malhotra, N., Yogavel, M., Sharma, A.
PDB entry 7f98: Homo sapiens Prolyl-tRNA Synthetase (HsPRS) in Complex with L-proline and compound L95
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2021-07-04
Authors: Malhotra, N., Manickam, Y., Sharma, A.
PDB entry 7f99: Homo sapiens Prolyl-tRNA Synthetase (HsPRS) in Complex with L-proline and compound L96
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.979 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9a: Homo sapiens Prolyl-tRNA Synthetase (HsPRS) in Complex with L-proline and compound L97
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9b: Homo sapiens Prolyl-tRNA Synthetase (HsPRS) in Complex with L-proline and compound L95
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.995 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9c: Homo sapiens Prolyl-tRNA Synthetase (HsPRS) in Complex with L-proline and compound L96
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.196 Å
Deposited: 2021-07-04
Authors: Malhotra, N., Manickam, Y., Sharma, A.
PDB entry 7f9d: Homo sapiens Prolyl-tRNA Synthetase (HsPRS) in Complex with L-proline and compound L96
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.497 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9f: Thrombocorticin
Classification: SUGAR BINDING PROTEIN
Source organism: Corticium sp. (in: Fungi)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.411 Å
Deposited: 2021-07-04
Authors: Kageyama, H., Onodera, K., Sakai, R., Tanaka, Y., Freymann, D.M.
PDB entry 7f9g: Thrombocorticin in complex with Ca2+ and fucose
Classification: SUGAR BINDING PROTEIN
Source organism: Corticium sp. (in: Fungi)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.331 Å
Deposited: 2021-07-04
Authors: Kageyama, H., Onodera, K., Sakai, R., Tanaka, Y.
PDB entry 7f9h: complex structure of EnrR-DNA
Classification: DNA BINDING PROTEIN
Source organism: Edwardsiella piscicida; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-07-04
Authors: Gan, J.H., Wang, Q.Y.
PDB entry 7f9i: The apo-form structure of EnrR
Classification: DNA BINDING PROTEIN
Source organism: Edwardsiella piscicida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-07-04
Authors: Gan, J.H., Wang, Q.Y.
PDB entry 7f9j: Thrombocorticin Q25K in complex with Ca2+
Classification: SUGAR BINDING PROTEIN
Source organism: Corticium sp. (in: Fungi)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2021-07-04
Authors: Kageyama, H., Onodera, K., Sakai, R., Tanaka, Y.
PDB entry 7f9k: Crystal structure of the variable region of Plasmodium RIFIN #6(PF3D7_1400600)
Classification: IMMUNE SYSTEM
Source organism: Plasmodium falciparum (isolate 3D7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2021-07-04
Authors: Xie, Y., Song, H., Li, X., Qi, J., Gao, G.F.
PDB entry 7f9l: Crystal structure of the variable region of Plasmodium RIFIN #6 (PF3D7_1400600) in complex with LAIR1 (with T67L, N69S and A77T mutations)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum (isolate 3D7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-07-04
Authors: Xie, Y., Song, H., Li, X., Qi, J., Gao, G.F.
PDB entry 7f9m: Crystal structure of the variable region of Plasmodium RIFIN #4 (PF3D7_1000500) in complex with LAIR1 (with T67L, N69S and A77T mutations)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum (isolate 3D7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-07-04
Authors: Xie, Y., Song, H., Li, X., Qi, J., Gao, G.F.
PDB entry 7f9n: Crystal structure of the variable region of Plasmodium RIFIN #4 (PF3D7_1000500) in complex with LAIR1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum (isolate 3D7)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-04
Authors: Xie, Y., Song, H., Li, X., Qi, J., Gao, G.F.
PDB entry 7f9o: PSI-NDH supercomplex of Barley
Classification: PHOTOSYNTHESIS
Source organism: Hordeum vulgare subsp. spontaneum
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2021-07-04
Authors: Wang, W.D., Shen, L., Tang, K., Han, G.Y., Shen, J.R., Zhang, X.
PDB entry 7f9p: Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor L95 and azetidine
Classification: LIGASE
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9q: Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor L97 and Febrifugine
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.796 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9r: Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor L95, L-Proline and Febrifugine
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9s: Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor T35 and Febrifugine (FF)
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.861 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9t: Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor L97 and Halofuginone
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.489 Å
Deposited: 2021-07-04
Authors: Malhotra, N., Manickam, Y., Sharma, A.
PDB entry 7f9u: Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor T35 and Halofuginone
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9v: Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with inhibitor T35 and Halofuginone
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.816 Å
Deposited: 2021-07-04
Authors: Manickam, Y., Malhotra, N., Sharma, A.
PDB entry 7f9w: CD25 in complex with Fab
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-05
Authors: Liu, C.
PDB entry 7f9x: Structure of the second OTU domain of LotA
Classification: HYDROLASE
Source organism: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-07-05
Authors: Iwai, T., Takekawa, T., Kubori, T., Nagai, H., Imada, K.
PDB entry 7f9y: ghrelin-bound ghrelin receptor in complex with Gq
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-07-05
Authors: Wang, Y., Zhuang, Y., Xu, P., Xu, H.E., Jiang, Y.
PDB entry 7f9z: GHRP-6-bound ghrelin receptor in complex with Gq
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-05
Authors: Wang, Y., Zhuang, Y., Xu, P., Xu, H.E., Jiang, Y.
PDB entry 7fa0: The crystal structure of VyPAL2-C214A, a dead mutant of VyPAL2 peptide asparaginyl ligase in form II
Classification: PLANT PROTEIN
Source organism: Viola philippica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-05
Authors: Hu, S., Sahili, A., Lescar, J.
PDB entry 7fa1: Crystal Structure of N-terminus of the non-structural protein 2 from SARS coronavirus
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-07-05
Authors: Li, Y.Y., Ren, Z.L., Bao, Z.H., Ming, Z.H., Yan, L.M., Lou, Z.Y., Rao, Z.H.
PDB entry 7fa3: Selenomethionine-derived structure of Aca1 in Pseudomonas phage JBD30
Classification: TRANSCRIPTION
Source organism: Pseudomonas phage JBD30
Experimental method: X-RAY DIFFRACTION
Resolution: 1.847 Å
Deposited: 2021-07-05
Authors: Liu, Y., Zhang, L., Wu, B., Huang, H.
PDB entry 7fab: CRYSTAL STRUCTURE OF HUMAN IMMUNOGLOBULIN FRAGMENT FAB NEW REFINED AT 2.0 ANGSTROMS RESOLUTION
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1991-11-20
Authors: Saul, F., Poljak, R.J.
PDB entry 7fac: Crystal Structure of C-terminus of the non-structural protein 2 from SARS coronavirus
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2021-07-06
Authors: Li, Y.Y., Ren, Z.L., Bao, Z.H., Ming, Z.H., Yan, L.M., Lou, Z.Y., Rao, Z.H.
PDB entry 7fad: Crystal structure of Xenopus GCP2-N terminal domain and Mzt2
Classification: STRUCTURAL PROTEIN
Source organism: Xenopus laevis; Xenopus tropicalis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.204 Å
Deposited: 2021-07-06
Authors: Shankar, S., Huang, T.L., Hsia, K.C.
PDB entry 7fae: S protein of SARS-CoV-2 in complex bound with P36-5D2(state2)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2021-07-06
Authors: Zhang, L., Wang, X., Shan, S., Zhang, S.
PDB entry 7faf: S protein of SARS-CoV-2 in complex bound with P36-5D2 (state1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2021-07-06
Authors: Zhang, L., Wang, X., Zhang, S., Shan, S.
PDB entry 7fag: Room temperature structure of elastase with high-strength agarose hydrogel
Classification: ISOMERASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2021-07-06
Authors: Sugiyama, S., Kakinouchi, K., Adachi, H., Murata, M., Mori, Y.
PDB entry 7fah: Immune complex of head region of CA09 HA and neutralizing antibody 12H5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Influenza A virus (strain swl A/California/04/2009 H1N1); Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.151 Å
Deposited: 2021-07-06
Authors: Li, T.T., Xue, W.H., Gu, Y., Li, S.W.
PDB entry 7fai: CARM1 bound with compound 9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09749 Å
Deposited: 2021-07-06
Authors: Cao, D.Y., Li, J., Xiong, B.
PDB entry 7faj: CARM1 bound with compound 43
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24507 Å
Deposited: 2021-07-06
Authors: Cao, D.Y., Li, J., Xiong, B.
PDB entry 7fak: Co-crystal Structure of Toxoplasma gondii Prolyl tRNA Synthetase (TgPRS) in complex with L96 and L-pro
Classification: TRANSLATION/INHIBITOR
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.899 Å
Deposited: 2021-07-06
Authors: Malhotra, N., Mishra, S., Yogavel, M., Sharma, A.
PDB entry 7fal: Co-crystal Structure of Toxoplasma gondii Prolyl tRNA Synthetase (TgPRS) in complex with T36 and L-pro
Classification: TRANSLATION/INHIBITOR
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.219 Å
Deposited: 2021-07-06
Authors: Malhotra, N., Mishra, S., Yogavel, M., Sharma, A.
PDB entry 7fam: Co-crystal Structure of Toxoplasma gondii Prolyl tRNA Synthetase (TgPRS) in complex with L97 and L-pro
Classification: TRANSLATION
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2021-07-06
Authors: Mishra, S., Malhotra, N., Yogavel, M., Sharma, A.
PDB entry 7fan: Co-crystal Structure of Toxoplasma gondii Prolyl tRNA Synthetase (TgPRS) in complex with T35 and L-pro
Classification: TRANSLATION
Source organism: Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.769 Å
Deposited: 2021-07-06
Authors: Mishra, S., Malhotra, N., Yogavel, M., Sharma, A.
PDB entry 7fao: Top7 surface mutant K42A Q43A K46A K57S K58S, and I68R
Classification: DE NOVO PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2021-07-07
Authors: Ito, Y., Makabe, K.
PDB entry 7fap: Structure of VAR2CSA-CSA 3D7
Classification: CELL ADHESION
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-07
Authors: Wang, L., Wang, Z.
PDB entry 7faq: Crystal structure of PDE5A in complex with inhibitor L1
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.20014 Å
Deposited: 2021-07-07
Authors: Wu, D., Huang, Y.Y., Luo, H.B.
PDB entry 7far: Crystal structure of PDE5A in complex with inhibitor L12
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.40006 Å
Deposited: 2021-07-07
Authors: Wu, D., Huang, Y.Y., Luo, H.B.
PDB entry 7fas: VAR2CSA 3D7 ectodomain core region
Classification: CELL ADHESION
Source organism: Plasmodium falciparum (isolate 3D7)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-07
Authors: Wang, L., Zhaoning, W.
PDB entry 7fat: Structure Determination of the RBD-NB1A7
Classification: STRUCTURAL PROTEIN
Source organism: Camelus bactrianus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2021-07-07
Authors: Geng, Y., Shi, Z.Z., Li, X.Y., Wang, L., Sun, Z.C., Zhang, H.W., Chen, X.C.
PDB entry 7fau: Structure Determination of the NB1B11-RBD Complex
Classification: STRUCTURAL PROTEIN
Source organism: Camelidae; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2021-07-07
Authors: Shi, Z.Z., Li, X.X., Wang, L., Sun, Z.C., Zhang, H.W., Chen, X.C., Cui, Q.Q., Qiao, H.R., Lan, Z.Y., Zhang, X.
PDB entry 7fav: Crystal Structure of Rubella Protease
Classification: HYDROLASE
Source organism: Rubella virus (strain RA27/3 vaccine)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2021-07-07
Authors: Quek, J.P.
PDB entry 7faw: Structure of LW domain from Yeast
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.438 Å
Deposited: 2021-07-07
Authors: Liao, S., Gao, J., Tu, X.
PDB entry 7fax: Complex structure of TbLeo1 and LW domain from Trypanosoma brucei
Classification: TRANSCRIPTION
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-07
Authors: Liao, S., Gao, J., Tu, X.
PDB entry 7fay: Crystal structure of SARS-CoV-2 main protease in complex with (R)-1a
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-08
Authors: Zeng, R., Quan, B.X., Liu, X.L., Lei, J.
PDB entry 7faz: Crystal structure of the SARS-CoV-2 main protease in complex with Y180
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-08
Authors: Zeng, R., Quan, B.X., Liu, X.L., Lei, J.
PDB entry 7fb0: SARS-CoV-2 spike protein in closed state
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-08
Authors: Zhu, Y., Tai, L.H., Sun, F.
PDB entry 7fb1: SARS-CoV-2 spike protein in one-RBD open state
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-07-08
Authors: Zhu, Y., Tai, L.H., Sun, F.
PDB entry 7fb3: SARS-CoV-2 spike protein in one-RBD weak state after CTSL-treatment
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-08
Authors: Zhu, Y., Tai, L.H., Sun, F.
PDB entry 7fb4: SARS-CoV-2 spike protein in two-RBD weak state after CTSL-treatment
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-08
Authors: Zhu, Y., Tai, L.H., Sun, F.
PDB entry 7fb5: Crystal structure of FAM134B/GABARAP complex
Classification: PROTEIN BINDING
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2021-07-08
Authors: Zhao, J., Li, J.
PDB entry 7fb6: C57D/C146D mutant of Human Cu, Zn Superoxide Dismutase (SOD1)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-08
Authors: Baek, Y., Ha, N.-C.
PDB entry 7fb7: Crystal structure of human UHRF1 TTD in complex with 5-amino-2,4-dimethylpyridine
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-07-08
Authors: Kori, S., Arita, K., Yoshimi, S.
PDB entry 7fb8: De Novo-Designed and Disulfide-Bridged Peptide Heterodimer - hd1
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-08
Authors: Yao, H., Yao, S., Zheng, Y., Moyer, A., Baker, D., Wu, C.
PDB entry 7fb9: Crystal Structure of Human Cu, Zn Superoxide Dismutase (SOD1)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-07-08
Authors: Baek, Y., Ha, N.-C.
PDB entry 7fba: De Novo-Designed and Disulfide-Bridged Peptide Heterodimer - hd2
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-07-08
Authors: Yao, H., Yao, S., Moyer, A., Zheng, Y., Baker, D., Wu, C.
PDB entry 7fbb: De novo design protein D12 with MBP tag
Classification: UNKNOWN FUNCTION
Source organism: Serratia sp. (strain FS14); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.307 Å
Deposited: 2021-07-09
Authors: Bin, H.
PDB entry 7fbc: De novo design protein D22 with MBP tag
Classification: UNKNOWN FUNCTION
Source organism: Serratia sp. (strain FS14); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-07-09
Authors: Bin, H.
PDB entry 7fbd: De novo design protein D53 with MBP tag
Classification: UNKNOWN FUNCTION
Source organism: Serratia sp. (strain FS14); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-07-09
Authors: Bin, H.
PDB entry 7fbf: The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with octanoic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.86 Å
Deposited: 2021-07-09
Authors: Sugiyama, S., Kakinouchi, K., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.
PDB entry 7fbg: Kinetic and structural analysis by Peptidoglycan editing factor from Bacillus cereus ATCC 14579
Classification: UNKNOWN FUNCTION
Source organism: Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-07-10
Authors: Seok, J., Kim, K.-J.
PDB entry 7fbh: geranyl pyrophosphate C6-methyltransferase BezA
Classification: TRANSFERASE
Source organism: Streptomyces sp. RI18
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-10
Authors: Tsutsumi, H., Moriwaki, Y., Terada, T., Shimizu, K., Katsuyama, Y., Ohnishi, Y.
PDB entry 7fbi: Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5
Classification: VIRAL PROTEIN
Source organism: Epstein-Barr virus (strain GD1); Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-07-10
Authors: Zheng, Q., Li, S., Zha, Z., Hong, J., Chen, Y., Zhang, X.
PDB entry 7fbj: Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing nanobody 17F6
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Chiloscyllium plagiosum; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-07-11
Authors: Zhu, J., Xu, T., Feng, B., Liu, J.
PDB entry 7fbk: Crystal structure of SARS-CoV-2 receptor binding domain N501Y mutant in complex with neutralizing nanobody 20G6
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Chiloscyllium plagiosum; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-11
Authors: Zhu, J., Xu, T., Feng, B., Liu, J.
PDB entry 7fbl: Thrombocorticin in complex with Ca2+ and mannose
Classification: SUGAR BINDING PROTEIN
Source organism: Corticium sp. (in: Fungi)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.419 Å
Deposited: 2021-07-11
Authors: Kageyama, H., Onodera, K., Sakai, R., Tanaka, Y.
PDB entry 7fbm: X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMSO solution containing dibutylhydroxytoluene (BHT)
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2021-07-11
Authors: Sugiyama, S., Kakinouchi, K., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.
PDB entry 7fbn: X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMF solution containing dibutylhydroxytoluene (BHT)
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2021-07-11
Authors: Sugiyama, S., Kakinouchi, K., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.
PDB entry 7fbo: geranyl pyrophosphate C6-methyltransferase BezA binding with S-adenosylhomocysteine
Classification: TRANSFERASE
Source organism: Streptomyces sp. RI-18-2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2021-07-12
Authors: Tsutsumi, H., Moriwaki, Y., Terada, T., Shimizu, K., Katsuyama, Y., Ohnishi, Y.
PDB entry 7fbp: FXIIa-cMCoFx1 complex
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2021-07-12
Authors: Sengoku, T., Liu, W., de Veer, S.J., Huang, Y.H., Okada, C., Zdenek, C.N., Fry, B.G., Swedberg, J.E., Passioura, T., Craik, D.J., Suga, H., Ogata, K.
PDB entry 7fbq: Human CLIC1 in complex with NSC602247
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-12
Authors: Kuila, S., Sonkar, K.S., Arulandu, A.
PDB entry 7fbr: Solution structure of The first RNA binding domain of Matrin-3
Classification: RNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2021-07-12
Authors: Muto, Y., Kobayashi, N., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 7fbs: structure of a channel
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-12
Authors: Jiang, D.J., Catterall, W.A.
PDB entry 7fbt: Crystal structure of chitinase (RmChi1) from Rhizomucor miehei (sp p32 2 1, MR)
Classification: HYDROLASE
Source organism: Rhizomucor miehei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-12
Authors: Jiang, Z.Q., Hu, S.Q., Zhu, Q., Liu, Y.C., Ma, J.W., Yan, Q.J., Gao, Y.G., Yang, S.Q.
PDB entry 7fbv: The solution structure of the second RRM domain of Matrin-3
Classification: RNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2021-07-13
Authors: Muto, Y., Kobayashi, N., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 7fbw: Acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis
Classification: HYDROLASE
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-13
Authors: Sasamoto, K., Himiyama, T., Moriyoshi, K., Ohmoto, T., Uegaki, K., Nishiya, Y., Nakamura, T.
PDB entry 7fby: Crystal Structure of PH0140 from Pyrococcus horikosii OT3
Classification: TRANSCRIPTION
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2021-07-13
Authors: Richard, M., Ahmad, M., Pal, R.K., Biswal, B.K., Jeyakanthan, J.
PDB entry 7fc0: Reconstitution of MbnABC complex from Rugamonas rubra ATCC-43154 (GroupIII)
Classification: METAL BINDING PROTEIN
Source organism: Rugamonas rubra
Experimental method: X-RAY DIFFRACTION
Resolution: 2.643 Å
Deposited: 2021-07-13
Authors: Chao, D., Zhaolin, L., Shoujie, L., Li, Z., Dan, Z., Ying, J., Wei, C.
PDB entry 7fc2: Crystal Structure of GPX6
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-13
Authors: Sun, J.
PDB entry 7fc3: structure of NL63 receptor-binding domain complexed with horse ACE2
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Equus caballus; Human coronavirus NL63
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2021-07-13
Authors: Wang, X.Q., Ge, J.W., Lan, J.
PDB entry 7fc4: X-ray structure of the human heart fatty acid-binding protein complexed with S-Ibuprofen
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-07-13
Authors: Sugiyama, S., Kakinouchi, K., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.
PDB entry 7fc5: Crystal structure of SARS-CoV-2 RBD and horse ACE2
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Equus caballus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.894 Å
Deposited: 2021-07-13
Authors: Wang, X.Q., Lan, J., Ge, J.W.
PDB entry 7fc6: Crystal structure of SARS-CoV RBD and horse ACE2
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Equus caballus; Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.655 Å
Deposited: 2021-07-13
Authors: Wang, X.Q., Lan, J., Ge, J.W.
PDB entry 7fc7: Acyl-Coenzyme A Binding Protein 96 (LMJ_17_0780) of Leishmania Major in complex with Coenzyme A
Classification: LIPID BINDING PROTEIN
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-14
Authors: Verma, S., Makde, R.D., Sundd, M.
PDB entry 7fc8: Crystal structure of the Apo enoyl-ACP-reductase (FabI) from Moraxella catarrhalis
Classification: OXIDOREDUCTASE
Source organism: Moraxella catarrhalis (strain BBH18)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.377 Å
Deposited: 2021-07-14
Authors: Katiki, M., Pratap, S., Kumar, P.