LiteFold/PDB huggingface dataset:
PDB entry 9bc1: SARS-CoV-2 Mpro in complex with peptide mimetic inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-04-07
Authors: Afsar, M., Priscila, B., Olsen, S.K.
PDB entry 9bc2: Transglutaminase 2 - Open State
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-04-07
Authors: Mathews, I.I., Sewa, A., Khosla, C.
PDB entry 9bc3: Transglutaminase 2 - Alternate state
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-04-07
Authors: Mathews, I.I., Sewa, A.S., Khosla, C.
PDB entry 9bc4: Transglutaminase 2 - Intermediate State
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-04-07
Authors: Sewa, A.S., Mathews, I.I., Khosla, C.
PDB entry 9bc5: AAV-2 Rep68-AAVS1 heptameric complex
Classification: VIRAL PROTEIN/DNA
Source organism: adeno-associated virus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.32 Å
Deposited: 2024-04-07
Authors: Jaiswal, R., Escalante, C.R.
PDB entry 9bc6: HCN1 M305L with propofol
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-04-07
Authors: Kim, E.D., Nimigean, C.M.
PDB entry 9bc7: HCN1 M305L holo
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-08
Authors: Kim, E.D., Nimigean, C.M.
PDB entry 9bc8: Cargo-loaded Myxococcus xanthus EncA encapsulin engineered pore mutant with T=4 icosahedral symmetry
Classification: VIRUS LIKE PARTICLE
Source organism: Myxococcus xanthus DK 1622
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-04-08
Authors: Andreas, M.P., Kwon, S., Giessen, T.W.
PDB entry 9bc9: Structure of KLHDC2 bound to SJ10278
Classification: LIGASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-04-08
Authors: Scott, D.C., Dharuman, S., Griffith, E., Chai, S.C., Ronnebaum, J., King, M.T., Tangallapally, R., Lee, C., Gee, C.T., Lee, H.W., Ochoada, J., Miller, D.J., Jayasinghe, T., Paulo, J.A., Elledge, S.J., Harper, J.W., Chen, T., Lee, R.E., Schulman, B.A.
PDB entry 9bca: Structure of KLHDC2 bound to SJ46411
Classification: LIGASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-04-08
Authors: Scott, D.C., Dharuman, S., Griffith, E., Chai, S.C., Ronnebaum, J., King, M.T., Tangallapally, R., Lee, C., Gee, C.T., Lee, H.W., Ochoada, J., Miller, D.J., Jayasinghe, T., Paulo, J.A., Elledge, S.J., Harper, J.W., Chen, T., Lee, R.E., Schulman, B.A.
PDB entry 9bcb: Crystal structure of human cellular retinol binding protein 3 in complex with C11 TopFluor MG
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-04-08
Authors: Golczak, M.
PDB entry 9bcc: Structure of KLHDC2 bound to SJ46418
Classification: LIGASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-04-08
Authors: Scott, D.C., Dharuman, S., Griffith, E., Chai, S.C., Ronnebaum, J., King, M.T., Tangallapally, R., Lee, C., Gee, C.T., Lee, H.W., Ochoada, J., Miller, D.J., Jayasinghe, T., Paulo, J.A., Elledge, S.J., Harper, J.W., Chen, T., Lee, R.E., Schulman, B.A.
PDB entry 9bce: Shewanella oneidensis LysR family regulator SO0839 regulatory domain
Classification: TRANSCRIPTION
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-04-08
Authors: Han, S.R., Liang, H.H., Lin, Z.H., Fan, Y.L., Ye, K., Gao, H.G., Tao, Y.J., Jin, M.
PDB entry 9bcf: Chimeric protein of crocodile allergen Cro p 1.0101 and GFP
Classification: ALLERGEN
Source organism: Aequorea victoria; Crocodylus porosus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-04-09
Authors: O'Malley, A., Ruethers, T., Lopata, A.L., Chruszcz, M.
PDB entry 9bcg: Myeloid cell leukemia-1 (Mcl-1) complexed with compound
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.898 Å
Deposited: 2024-04-09
Authors: Zhao, B., Fesik, S.W.
PDB entry 9bch: Solution structure of the hemoglobin receptor HbpA from Corynebacterium diphtheriae
Classification: PROTEIN BINDING
Source organism: Corynebacterium diphtheriae NCTC 13129
Experimental method: SOLUTION NMR
Deposited: 2024-04-09
Authors: Mahoney, B.J., Clubb, R.T.
PDB entry 9bci: Structure of West Nile Virus 3'- stem-loop_50NTS
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-04-09
Authors: Zhu, Y., Chaubey, B., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9bcj: Crystal structure of human hemoglobin in complex with the HbpA receptor from Corynebacterium diphtheriae
Classification: PROTEIN BINDING
Source organism: Corynebacterium diphtheriae NCTC 13129; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.691 Å
Deposited: 2024-04-09
Authors: Mahoney, B.J., Cascio, D., Clubb, R.T.
PDB entry 9bcl: Extracellular domain of apo GC-A, state 1
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-04-09
Authors: Liu, S., Huang, X.
PDB entry 9bcm: Crystal structure of the glycosyltransferase UGT95A1
Classification: TRANSFERASE
Source organism: Pilosella officinarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-04-09
Authors: Pereira, J.H., Sirirungruang, S., Shih, P.M., Adams, P.D.
PDB entry 9bcn: Extracellular domain of apo GC-A, state 2
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-04-09
Authors: Liu, S., Huang, X.
PDB entry 9bco: Intracellular domain of apo GC-A
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-04-09
Authors: Liu, S., Huang, X.
PDB entry 9bcp: Kinase homology domain of apo GC-A
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-04-09
Authors: Liu, S., Huang, X.
PDB entry 9bcq: Extracellular domain of GC-A bound to ANP
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-09
Authors: Liu, S., Huang, X.
PDB entry 9bcr: Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-04-09
Authors: Qian, R., Jing, W., Vinay, I., Shanwen, Z., Jeehae, S., William, G.L., Luis, M.R.H., Jong, H.S., Young, A.G., IIya, L., Kirill, M., Baron, C., Huan, B.
PDB entry 9bcs: Intracellular domain of GC-A bound to ANP
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-04-09
Authors: Liu, S., Huang, X.
PDB entry 9bct: Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex containing 44 nt RNA
Classification: TRANSCRIPTION
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-04-09
Authors: You, L., Ebright, R.H.
PDB entry 9bcu: Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex containing 52 nt RNA
Classification: TRANSCRIPTION
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-04-09
Authors: You, L., Ebright, R.H.
PDB entry 9bcv: Cyclase domain of GC-A bound to ANP
Classification: LYASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-04-09
Authors: Liu, S., Huang, X.
PDB entry 9bcx: Cryo-EM structure of the S. cerevisiae ORC-Cdc6-Mcm2-7-DNA complex with a fully closed Mcm2-Mcm5 DNA entry gate
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2024-04-10
Authors: Yuan, Z., Bai, L., Li, H., Speck, C.
PDB entry 9bcy: Crystal structure of Mayaro virus capsid C-terminal domain
Classification: VIRAL PROTEIN
Source organism: Mayaro virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2024-04-10
Authors: Bezerra, E.H.S., Scorsato, V., Tonoli, C.C., Benedetti, C.E., Marques, R.E.
PDB entry 9bcz: Chicken 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1 (PLCZ1) in complex with calcium and phosphorylated threonine
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-04-10
Authors: Edwards, M.M., Dong, A., Theo-Emegano, N., Seitova, A., Loppnau, P., Leung, R., Li, H., Ilyassov, O., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium, Structural Genomics Consortium (SGC)
PDB entry 9bd0: Solution Structure of a Disulfide Insertion Mutant of S. aureus SPIN
Classification: IMMUNE SYSTEM
Source organism: Staphylococcus aureus
Experimental method: SOLUTION NMR
Deposited: 2024-04-10
Authors: Mishra, N.B., Prakash, O., Geisbrecht, B.V.
PDB entry 9bd1: beta/alpha1 region of ApoB 100
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.4 Å
Deposited: 2024-04-10
Authors: Dearborn, A.D., Reimund, M., Graziano, G., Lei, H., Kumar, A., Neufeld, E.B., Remaley, A.T., Marcotrigiano, J.
PDB entry 9bd2: MAGE-A3 MHD crystal soaked with KL861
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2024-04-10
Authors: Butrin, A., Krone, M.W., Li, K., Bond, M.J., Linhares, B.M., Crews, C.
PDB entry 9bd3: Structure of the MAGEA4 MHD-RAD18 R6BD Complex
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-04-10
Authors: Forker, K., Zhou, P.
PDB entry 9bd4: YjfP, Klebsiella pneumoniae serine hydrolase, unbound
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-04-11
Authors: Randall, G.T., Fellner, M.
PDB entry 9bd5: Laccase from Bacillus licheniformis
Classification: OXIDOREDUCTASE
Source organism: Bacillus paralicheniformis ATCC 9945a
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-04-11
Authors: Habib, M.H., Smith, T.J.
PDB entry 9bd6: PaMsbA in an occluded, outward conformation
Classification: TRANSLOCASE
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-04-11
Authors: Bahramimoghaddam, H., Laganowsky, A.
PDB entry 9bd7: PaMsbA in an open, outward conformation
Classification: TRANSLOCASE
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2024-04-11
Authors: Bahramimoghaddam, H., Laganowsky, A.
PDB entry 9bd8: ApoB 100 beta barrel bound to LDLR beta propeller
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2024-04-11
Authors: Dearborn, A.D., Reimund, M., Graziano, G., Lei, H., Kumar, A., Neufeld, E.B., Remaley, A.T., Marcotrigiano, J.
PDB entry 9bd9: SARS CoV-2 full-length WT spike protein, 1RBD-up conformation (SPIKE-WT)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-04-11
Authors: Singh, S., Hasan, S.S.
PDB entry 9bdc: Cryo-EM Structure of the TEFM-bound Human Mitochondrial Transcription Substrate Rejection Complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-04-11
Authors: Herbine, K.H., Nayak, A.R., Temiakov, D.
PDB entry 9bdd: Cryo-EM Structure of Non-Cognate Substrate Bound in the Entry Site (ES) of Human Mitochondrial Transcription Elongation Complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-04-11
Authors: Herbine, K.H., Nayak, A.R., Temiakov, D.
PDB entry 9bde: Middle Region of Apolipoprotein B 100 bound to Low Density Lipoprotein Receptor
Classification: LIPID TRANSPORT
Source organism: Camelus bactrianus; Escherichia coli; Homo sapiens; Mus musculus; Staphylococcus aureus; Streptococcus sp. 'group G'
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2024-04-11
Authors: Dearborn, A.D., Reimund, M., Graziano, G., Lei, H., Kumar, A., Neufeld, E.B., Remaley, A.T., Marcotrigiano, J.
PDB entry 9bdf: Influenza A virus Hemagglutinin H3/Darwin/6/2021 in complex with Fab ADI-85666
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-04-11
Authors: Ferreira Ramos, A.S., Bajic, G.
PDB entry 9bdg: Influenza A virus Hemagglutinin H3/Darwin/6/2021 in complex with Fab ADI-85647
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-04-11
Authors: Ferreira Ramos, A.S., Bajic, G.
PDB entry 9bdh: Crystal structure of HIV-1 MPER scaffold in complex with antibody Fab Ab45.1
Classification: VIRAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-04-11
Authors: Lee, C.C.D., Wilson, I.A.
PDB entry 9bdi: Crystal structure of HIV-1 MPER scaffold in complex with antibody Fab Ab45.2
Classification: VIRAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2024-04-11
Authors: Lee, C.C.D., Wilson, I.A.
PDB entry 9bdj: MicroED structure of bovine liver catalase with missing cone eliminated by suspended drop
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 4 Å
Deposited: 2024-04-11
Authors: Gillman, C., Bu, G., Gonen, T.
PDB entry 9bdl: 80S ribosome with angiogenin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-04-12
Authors: Loveland, A.B., Korostelev, A.A.
PDB entry 9bdm: Cryo-EM structure of cardiac amyloid fibril from a variant ATTRV122delta, single filament morphology
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2024-04-12
Authors: Nguyen, B.A., Ahmed, Y., Saelices, L.
PDB entry 9bdn: 80S ribosome with angiogenin and tRNAAla
Classification: RIBOSOME
Source organism: Escherichia coli; Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-12
Authors: Loveland, A.B., Korostelev, A.A.
PDB entry 9bdo: Crystal structure of anti-abTCR NANOBODY VHH
Classification: ANTITUMOR PROTEIN
Source organism: Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.948 Å
Deposited: 2024-04-12
Authors: Qiu, Y.
PDB entry 9bdp: 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Classification: RIBOSOME
Source organism: Escherichia coli; Homo sapiens; Oryctolagus cuniculus; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-04-12
Authors: Loveland, A.B., Korostelev, A.A.
PDB entry 9bdq: The structure of NiV L-P complex
Classification: VIRAL PROTEIN
Source organism: Henipavirus nipahense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2024-04-12
Authors: Hu, S., Yang, P., Yu, Z., Abraham, J.
PDB entry 9bdr: Cryo-EM structure of cardiac amyloid fibril from a variant ATTRV122delta, double filament morphology 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2024-04-12
Authors: Nguyen, B.A., Ahmed, Y., Saelices, L.
PDB entry 9bds: Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP with Trp
Classification: RNA BINDING PROTEIN
Source organism: Halalkalibacterium halodurans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-04-12
Authors: Yang, H., Stachowski, K., Foster, M.
PDB entry 9bdt: Apolipoprotein B 100 bound to LDL receptor and legobody
Classification: LIPID TRANSPORT
Source organism: Camelus bactrianus; Escherichia coli; Homo sapiens; Mus musculus; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.4 Å
Deposited: 2024-04-12
Authors: Dearborn, A.D., Reimund, M., Graziano, G., Lei, H., Kumar, A., Neufeld, E.B., Remaley, A.T., Marcotrigiano, J.
PDB entry 9bdu: NF-kappaB RelA homo-dimer bound to AT-centric kappaB DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2024-04-12
Authors: Biswas, T., Huang, D., Ghosh, G.
PDB entry 9bdv: NF-kappaB RelA homo-dimer bound to TA-centric kappaB DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-12
Authors: Biswas, T., Shahabi, S., Tsodikov, O.V.
PDB entry 9bdw: NF-kappaB RelA homo-dimer bound to GC-centric kappaB DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-04-12
Authors: Biswas, T., Shahabi, S., Tsodikov, O.V., Huang, D., Ghosh, G.
PDB entry 9bdx: NF-kappaB RelA homo-dimer bound to CG-centric kappaB DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2024-04-12
Authors: Biswas, T., Shahabi, S., Tsodikov, O.V., Ghosh, G.
PDB entry 9bdy: AT-centric NF-kappaB RelA binding DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-04-13
Authors: Biswas, T., Shahabi, S., Tsodikov, O.V., Ghosh, G.
PDB entry 9bdz: TA-centric NF-kappaB RelA binding DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-04-13
Authors: Biswas, T., Shahabi, S., Tsodikov, O.V., Wang, V., Ghosh, G.
PDB entry 9be0: GC-centric NF-kappaB RelA binding DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-13
Authors: Biswas, T., Shahabi, S., Tsodikov, O.V., Ghosh, G.
PDB entry 9be1: CG-centric NF-kappaB RelA binding DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-13
Authors: Biswas, T., Shahabi, S., Tsodikov, O.V., Wang, V., Ghosh, G.
PDB entry 9be2: Structure of the E. coli nucleic associated protein, YejK
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.56 Å
Deposited: 2024-04-13
Authors: Schumacher, M.A.
PDB entry 9be3: The pre-condensation state of the dimodular NRPS protein LgrA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Brevibacillus parabrevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-04-13
Authors: Pistofidis, A., Schmeing, T.M.
PDB entry 9be4: The post-condensation state of the dimodular NRPS protein LgrA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Brevibacillus parabrevis
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-04-13
Authors: Pistofidis, A., Schmeing, T.M.
PDB entry 9be5: Cryo-EM structure of Human Nucleosome collected by EPU on Glacios at 3.3 Angstrom resolution
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-14
Authors: Jia, L., Ruben, E.A., Olsen, S.K., Wasmuth, E.V.
PDB entry 9be6: Cryo-EM structure of Human Nucleosome collected by Leginon on Krios at 3.0 Angstrom resolution
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-14
Authors: Jia, L., Ruben, E.A., Olsen, S.K., Wasmuth, E.V.
PDB entry 9be7: Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP without Trp
Classification: RNA BINDING PROTEIN
Source organism: Halalkalibacterium halodurans
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.24 Å
Deposited: 2024-04-15
Authors: Yang, H., Stachowski, K., Foster, M.
PDB entry 9be8: Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant T49A/T52A dTRAP with Trp
Classification: RNA BINDING PROTEIN
Source organism: Halalkalibacterium halodurans
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2024-04-15
Authors: Yang, H., Stachowski, K., Foster, M.
PDB entry 9be9: HIV-1 Env 16055 dGly4 NFL
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-04-15
Authors: Ozorowski, G., Lee, W.-H., Ward, A.B.
PDB entry 9bea: Structure of SARS-CoV-2 full-length WT spike protein with internal tag, 2RBD-up conformation (SPIKE-WT)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2024-04-15
Authors: Singh, S., Hasan, S.S.
PDB entry 9beb: Tungstate binding protein (Tungbindin) from Eubacterium limosum with eight Tungstates bound
Classification: METAL BINDING PROTEIN
Source organism: Eubacterium limosum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-04-15
Authors: Zhou, D., Rose, J.P., Chen, L., Wang, B.C.
PDB entry 9bed: Tungstate binding protein (Tungbindin) from Eubacterium limosum with eight molybdates bound
Classification: METAL BINDING PROTEIN
Source organism: Eubacterium limosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-04-15
Authors: Zhou, D., Rose, J.P., Chen, L., Wang, B.C.
PDB entry 9bee: alphaB-crystallin N-terminal IXI variant in a fibril state
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-15
Authors: McFarland, R., Reichow, S.L.
PDB entry 9bef: Structure of S1_8B, a lambda-carrageenan specific sulfatase, in complex with an oligosaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudoalteromonas distincta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-04-15
Authors: Hettle, J.A., Vickers, C., Boraston, A.B.
PDB entry 9beh: Structure of GH110A in complex with galactose-6-sulfate
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudoalteromonas distincta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.247 Å
Deposited: 2024-04-15
Authors: Hettle, J.A., Vickers, C., Boraston, A.B.
PDB entry 9bei: Cryo-EM structure of synthetic claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-2, and Nanobody
Classification: MEMBRANE PROTEIN/IMMUNE SYSYTEM
Source organism: Clostridium perfringens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2024-04-15
Authors: Vecchio, A.J.
PDB entry 9bel: Tungstate binding protein (Tungbindin) from Eubacterium limosum with five Tungstates bound
Classification: METAL BINDING PROTEIN
Source organism: Eubacterium limosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2024-04-15
Authors: Zhou, D., Rose, J.P., Chen, L., Wang, B.C.
PDB entry 9bem: Tungstate binding protein (Tungbindin) from Eubacterium limosum with seven Tungstates bound
Classification: METAL BINDING PROTEIN
Source organism: Eubacterium limosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-04-15
Authors: Zhou, D., Rose, J.P., Chen, L., Wang, B.C.
PDB entry 9beo: Tungstate binding protein (Tungbindin) from Eubacterium limosum with 7.5 tungstates bound
Classification: METAL BINDING PROTEIN
Source organism: Eubacterium limosum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-04-16
Authors: Zhou, D., Rose, J.P., Chen, L., Wang, B.C.
PDB entry 9bep: Structure of S1_8C, a lambda-carrageenan specific sulfatase, in complex with an oligosaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudoalteromonas distincta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.898 Å
Deposited: 2024-04-16
Authors: Hettle, J.A., Vickers, C., Boraston, A.B.
PDB entry 9beq: Crystal structure of pregnane X receptor ligand binding domain complexed with AP1867
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-16
Authors: Huber, A.D., Poudel, S., Miller, D.J., Chen, T.
PDB entry 9ber: Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-04-16
Authors: Gorman, J., Kwong, P.D.
PDB entry 9bes: Structure of S1_8A, a lambda-carrageenan specific sulfatase, in complex with monosaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudoalteromonas distincta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.079 Å
Deposited: 2024-04-16
Authors: Hettle, J.A., Vickers, C., Boraston, A.B.
PDB entry 9bet: Structure of the human CD33 transmembrane domain
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-04-16
Authors: Ulmer, T.S., Vu, H.N.
PDB entry 9beu: Structure of GH110B in complex with a lambda-carrageenan oligosaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudoalteromonas distincta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-04-16
Authors: Hettle, J.A., Vickers, C., Boraston, A.B.
PDB entry 9bev: Structure of GH110A in complex with a lambda-carrageenan oligosaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudoalteromonas distincta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-04-16
Authors: Hettle, J.A., Vickers, C., Boraston, A.B.
PDB entry 9bew: Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-16
Authors: Gorman, J., Kwong, P.D.
PDB entry 9bex: X-ray crystallography structural model of the immunoglobulin G1 (IgG1) Fc D270C K326C variant
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-04-16
Authors: Shenoy, A., Barb, A.W.
PDB entry 9bey: Structure of a lambda-carrageenan active GH2 A in complex with inhibitor
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudoalteromonas distincta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.386 Å
Deposited: 2024-04-16
Authors: Hettle, J.A., Vickers, C., Boraston, A.B.
PDB entry 9bez: MID domain of human Argo2 bound to RNA
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-16
Authors: Harp, J.M., Egli, M.
PDB entry 9bf0: MID domain of human Argo2 bound to UTP
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-04-16
Authors: Harp, J.M., Egli, M.
PDB entry 9bf1: Structure of apo-state V. cholerae DdmD
Classification: IMMUNE SYSTEM
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-16
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 9bf2: MID domain of Ago2 bound to UMP
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-04-16
Authors: Harp, J.M., Egli, M.
PDB entry 9bf3: Cryo-EM Structure of GCN2 HRSL Domain
Classification: SIGNALING PROTEIN
Source organism: Kluyveromyces marxianus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-04-16
Authors: Solorio-Kirpichyan, K.M., Golovenko, D., Xiao, F., Yan, N., Korostelev, A.A., Korennykh, A.V.
PDB entry 9bf4: NMR solution structure of Paws Derived Peptide-25 (PDP-25)
Classification: PLANT PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-04-16
Authors: Hajiaghaalipour, F., Wong, W., Payne, C.D., Fisher, M.F., Clark, R.J., Mylne, J.S., Rosengren, K.J.
PDB entry 9bf5: Structure of V. cholerae DdmD in complex with ssDNA
Classification: IMMUNE SYSTEM/DNA
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-04-16
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 9bf6: Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-04-16
Authors: Gorman, J., Kwong, P.D.
PDB entry 9bf7: SARS-CoV-2 Papain-like Protease (PLpro) C111S Untagged Crystal Structure
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-04-17
Authors: Al-Homoudi, A.I., Brunzelle, J.S., Gavande, N., Kovari, L.C.
PDB entry 9bf8: SARS-CoV-2 Papain-like Protease (PLpro) Untagged Crystal Structure
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-04-17
Authors: Al-Homoudi, A.I., Engel, J., Brunzelle, J.S., Gavande, N., Kovari, L.C.
PDB entry 9bf9: Human LAG-3-HLA-DR1 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-04-17
Authors: Petersen, J., Rossjohn, J.
PDB entry 9bfa: BCAT mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.786 Å
Deposited: 2024-04-17
Authors: Dong, M.
PDB entry 9bfb: Crystal structure of BRAF kinase domain with PF-07284890
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-04-17
Authors: Mou, T.-C.
PDB entry 9bfc: Cryo-EM structure of importin alpha-1/beta bound to FG repeats
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-04-17
Authors: Ko, Y., Cingolani, G.
PDB entry 9bfd: Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex A
Classification: ISOMERASE
Source organism: Brevibacillus parabrevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-04-17
Authors: Heberlig, G.W., Burkart, M.D.
PDB entry 9bfe: Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex B
Classification: ISOMERASE
Source organism: Brevibacillus parabrevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-04-17
Authors: Heberlig, G.W., Burkart, M.D.
PDB entry 9bff: Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex C
Classification: ISOMERASE
Source organism: Brevibacillus parabrevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-04-17
Authors: Heberlig, G.W., Burkart, M.D.
PDB entry 9bfg: Structure of the crosslinked PCP-E didomain of tyrocidine synthetase A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Brevibacillus parabrevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-04-17
Authors: Heberlig, G.W., Burkart, M.D.
PDB entry 9bfh: Cryo-EM co-structure of AcrB with the CU032 efflux pump inhibitor
Classification: TRANSLOCASE
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-04-17
Authors: Su, C.C.
PDB entry 9bfi: Cryo-EM structure of human CHT1 in the apo inward-open state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2024-04-17
Authors: Xue, J., Jiang, Y.
PDB entry 9bfj: Cryo-EM structure of human CHT1 in the choline bound state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2024-04-17
Authors: Xue, J., Jiang, Y.
PDB entry 9bfk: Cryo-EM structure of human CHT1 in the ML352 bound state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2024-04-18
Authors: Xue, J., Jiang, Y.
PDB entry 9bfl: Solution structure of the scorpion toxin omega-Buthitoxin-Hf1a
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2024-04-18
Authors: Rosengren, K.J., Payne, C.D.
PDB entry 9bfm: Cryo-EM co-structure of AcrB with the EPM35 efflux pump inhibitor
Classification: TRANSLOCASE
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-04-18
Authors: Su, C.C.
PDB entry 9bfn: Cryo-EM co-structure of AcrB with the CU232 efflux pump inhibitor
Classification: TRANSLOCASE
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-04-18
Authors: Su, C.C.
PDB entry 9bfo: BCAT mutant 36E
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.663 Å
Deposited: 2024-04-18
Authors: Dong, M., Dare, E.
PDB entry 9bfp: Cryo-EM structure of Sevenless extracellular domain (monomer)
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-04-18
Authors: Cerutti, G., Shapiro, L.
PDB entry 9bfq: Cryo-EM structure of Sevenless in complex with Bride of Sevenless
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-04-18
Authors: Cerutti, G., Shapiro, L.
PDB entry 9bfr: Cryo-EM structure of Bride of Sevenless extracellular domain (dimer, Sevenless-bound form)
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-04-18
Authors: Cerutti, G., Shapiro, L.
PDB entry 9bfs: Cryo-EM structure of Sevenless extracellular domain (dimer, pH 6.6)
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-04-18
Authors: Cerutti, G., Shapiro, L.
PDB entry 9bft: Cryo-EM co-structure of AcrB with CU244
Classification: TRANSLOCASE
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2024-04-18
Authors: Su, C.C.
PDB entry 9bfu: Cryo-EM structure of Sevenless extracellular domain (composite map of the dimer, pH 4.6)
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2024-04-18
Authors: Cerutti, G., Shapiro, L.
PDB entry 9bfv: Tri-complex of Compound-23, KRAS G12C, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Knox, J.E., Yano, J.K.
PDB entry 9bfw: Tri-complex of Compound-4, KRAS G12C, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Knox, J.E., Yano, J.K.
PDB entry 9bfx: Tri-complex of Elironrasib (RMC-6291), KRAS G12C, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.
PDB entry 9bfy: Tri-complex of Compound-14, KRAS G12C, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.
PDB entry 9bfz: Tri-complex of Compound-5, KRAS G12C, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.
PDB entry 9bg0: Tri-complex of Daraxonrasib (RMC-6236), NRAS WT, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bg1: Tri-complex of Compound-3, KRAS G12V, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.
PDB entry 9bg2: Tri-complex of Compound-10, KRAS G12V, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bg3: Tri-complex of Daraxonrasib (RMC-6236), NRAS Q61K, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bg4: Tri-complex of Compound-2, KRAS G12V, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bg5: Tri-complex of Daraxonrasib (RMC-6236), KRAS G13D, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bg6: Tri-complex of Daraxonrasib (RMC-6236), KRAS G12V, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Saldajeno-Concar, M., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bg7: Tri-complex of Compound-6, KRAS G12V, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.
PDB entry 9bg8: Tri-complex of Daraxonrasib (RMC-6236), NRAS Q61R, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bg9: Tri-complex of Daraxonrasib (RMC-6236), KRAS WT, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Saldajeno-Concar, M., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bga: Tri-complex of Daraxonrasib (RMC-6236), KRAS G12C, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2024-04-18
Authors: Chen, A., Tomlinson, A.C.A., Bieder, R., Knox, J.E., Yano, J.K.
PDB entry 9bgb: Tri-complex of Daraxonrasib (RMC-6236), KRAS Q61H, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bgc: Tri-complex of Daraxonrasib (RMC-6236), KRAS G12R, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Bieder, R., Bar Ziv, T., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bgd: Tri-complex of Daraxonrasib (RMC-6236), NRAS Q61L, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-04-18
Authors: Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 9bge: Cryo-EM structure of mAb8-24 bound to 426c.WITO.TM.SOSIP
Classification: IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-04-18
Authors: Hurlburt, N.K., Pancera, M.
PDB entry 9bgf: Structure of human GlcNAc-1-phosphotransferase complexed with the donor substrate UDP-GlcNAc
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-04-18
Authors: Li, H., Li, H.
PDB entry 9bgg: Structure of a hyperactive S1S3 truncation of the human GlcNAc-1-phosphotransferase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-18
Authors: Li, H., Li, H.
PDB entry 9bgh: Crystal structure of KRAS G12D in a transition state mimetic complex with CYPA and RMC-7977
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-04-18
Authors: Pourfarjam, Y., Goldgur, Y., Cuevas-Navarro, A., Lito, P.
PDB entry 9bgi: Activated wild-type SgrAI endonuclease DNA-bound dimer with Mg2+ and cleaved primary site DNA
Classification: HYDROLASE/DNA
Source organism: Streptomyces griseus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-04-18
Authors: Shan, Z., Lyumkis, D., Horton, N.C.
PDB entry 9bgj: SgrAI mutant K242A endonuclease DNA-bound dimer with Mg2+ and intact primary site DNA
Classification: HYDROLASE/DNA
Source organism: Streptomyces griseus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2024-04-18
Authors: Shan, Z., Lyumkis, D., Horton, N.C.
PDB entry 9bgk: Structure of V.cholera DdmDE (2D:1E) in complex with DNA
Classification: IMMUNE SYSTEM/DNA
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-04-19
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 9bgl: Complex of Zinc Finger Antiviral Protein RBD and KHNYN CTD
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.294 Å
Deposited: 2024-04-19
Authors: Meagher, J.L., Smith, J.L.
PDB entry 9bgm: Pseudomonas phage DEV neck and tail (portal, head-to-tail and tail tube proteins)
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage vB_PaeP_DEV
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-19
Authors: Iglesias, S.M., Hou, C.-F.D., Li, F., Cingolani, G.
PDB entry 9bgn: Pseudomonas phage DEV 5-fold vertex (major coat protein)
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas phage vB_PaeP_DEV
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-19
Authors: Iglesias, S.M., Hou, C.F.D., Li, F., Cingolani, G.
PDB entry 9bgo: Pseudomonas phage DEV gp72 ejection protein (pre-ejection conformation)
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas phage vB_PaeP_DEV
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-04-19
Authors: Iglesias, S.M., Hou, C.F.D., Li, F., Cingolani, G.
PDB entry 9bgp: X-ray structure of the aminotransferase from Vibrio vulnificus responsible for the biosynthesis of 2,3-diacetamido-4-amino-2,3,4-trideoxy-arabinose in the presence of its internal aldimine
Classification: TRANSFERASE
Source organism: Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-04-19
Authors: Fait, D.J., Thoden, J.B., Holden, H.M.
PDB entry 9bgq: Cryo-EM structure of Trypanosoma cruzi MscS
Classification: TRANSPORT PROTEIN
Source organism: Trypanosoma cruzi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-04-19
Authors: Zhang, J., Yuan, P.
PDB entry 9bgr: X-ray structure of the aminotransferase from Vibrio vulnificus responsible for the biosynthesis of 2,3-diacetamido-4-amino-2,3,4-trideoxy-arabinose in the presence of its external aldimine with 2,3-diacetamido-4-amino-2,3,4-trideoxy-l-arabinose
Classification: TRANSFERASE
Source organism: Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2024-04-19
Authors: Fait, D.J., Thoden, J.B., Holden, H.M.
PDB entry 9bgs: Cryo-EM structure of Trypanosoma cruzi MscS in lipid nanodiscs
Classification: TRANSPORT PROTEIN
Source organism: Trypanosoma cruzi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-04-19
Authors: Zhang, J., Yuan, P.
PDB entry 9bgt: Cryo-EM structure of Trypanosoma cruzi MscS C66L in nanodiscs
Classification: TRANSPORT PROTEIN
Source organism: Trypanosoma cruzi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-04-19
Authors: Zhang, J., Yuan, P.
PDB entry 9bgu: Cryo-EM structure of Trypanosoma cruzi MscS G63V in lipid nanodiscs
Classification: TRANSPORT PROTEIN
Source organism: Trypanosoma cruzi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-04-19
Authors: Zhang, J., Yuan, P.
PDB entry 9bgv: DosP R97A straight form
Classification: OXYGEN BINDING
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-04-19
Authors: Kumar, P., Kober, D.L.
PDB entry 9bgy: Ancestral uncoupled aspartate transporter, apo conditions, low-affinity state
Classification: TRANSPORT PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-19
Authors: Reddy, K.D., Boudker, O.
PDB entry 9bgz: Ancestral uncoupled aspartate transporter, apo conditions, high-affinity state
Classification: TRANSPORT PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-19
Authors: Reddy, K.D., Boudker, O.
PDB entry 9bh0: Ancestral uncoupled aspartate transporter in complex with L-aspartate
Classification: TRANSPORT PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-19
Authors: Reddy, K.D., Boudker, O.
PDB entry 9bh1: Apo GltPh, intermediate outward-facing state
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-19
Authors: Reddy, K.D., Boudker, O.
PDB entry 9bh2: Apo GltPh, outward-facing state
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-04-19
Authors: Reddy, K.D., Boudker, O.