LiteFold/PDB huggingface dataset:
PDB entry 7x47: Cryo-EM structure of Coxsackievirus B1 empty particle in complex with nAb 2E6 (classified from CVB1 mature virion in complex with 8A10 and 2E6)
Classification: VIRUS
Source organism: Coxsackievirus B1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2022-03-02
Authors: Zheng, Q., Zhu, R., Sun, H., Cheng, T., Li, S., Xia, N.
PDB entry 7x48: The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pelargonic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.86 Å
Deposited: 2022-03-02
Authors: Sugiyama, S., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.
PDB entry 7x49: Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 8A10 (classified from CVB1 mature virion in complex with 8A10 and 9A3)
Classification: VIRUS
Source organism: Coxsackievirus B1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-03-02
Authors: Zheng, Q., Zhu, R., Sun, H., Cheng, T., Li, S., Xia, N.
PDB entry 7x4a: Native CD-NTase ClCdnE
Classification: TRANSFERASE
Source organism: Cecembia lonarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2022-03-02
Authors: Chen, Y., Ko, T.P., Yang, C.S., Wang, Y.C., Hou, M.H.
PDB entry 7x4b: Crystal Structure of An Anti-CRISPR Protein
Classification: PROTEIN BINDING
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2022-03-02
Authors: Hu, J., Zhang, S., Gao, J.Y., Liu, X., Liu, J.
PDB entry 7x4c: Native CD-NTase EfCdnE
Classification: TRANSFERASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-03-02
Authors: Chen, Y., Ko, T.P., Yang, C.S., Wang, Y.C., Hou, M.H.
PDB entry 7x4d: Crystal structure of chlorotoxin mutant - Y29K
Classification: TOXIN
Source organism: Leiurus quinquestriatus quinquestriatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-03-02
Authors: Chang, Y.T., Chuang, W.J.
PDB entry 7x4e: Structure of 10635-DndE
Classification: DNA BINDING PROTEIN
Source organism: Natronorubrum bangense JCM 10635
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2022-03-02
Authors: Haiyan, G., Wei, H., Chen, S., Wang, L., Wu, G.
PDB entry 7x4f: Native CD-NTase LpCdnE
Classification: TRANSFERASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2022-03-02
Authors: Chen, Y., Ko, T.P., Yang, C.S., Wang, Y.C., Hou, M.H.
PDB entry 7x4g: CD-NTase ClCdnE in complex with substrate UTP
Classification: TRANSFERASE
Source organism: Cecembia lonarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-03-02
Authors: Chen, Y., Ko, T.P., Yang, C.S., Wang, Y.C., Hou, M.H.
PDB entry 7x4h: Crystal structure of CK2a1 complexed with AG1112
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2022-03-02
Authors: Ikeda, A., Kinoshita, T., Tsuyuguchi, M.
PDB entry 7x4i: Crystal structure of nanobody aSA3 in complex with dimer SARS-CoV-1 RBD
Classification: ANTIVIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.38 Å
Deposited: 2022-03-02
Authors: Ma, H., Zeng, W.H., Jin, T.C.
PDB entry 7x4j: The 0.96 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with arachidic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.96 Å
Deposited: 2022-03-02
Authors: Sugiyama, S., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.
PDB entry 7x4k: Cryo-EM structure of Coxsackievirus B1 empty particle in complex with nAb 9A3 (classified from CVB1 mature virion in complex with 8A10 and 9A3)
Classification: VIRUS
Source organism: Coxsackievirus B1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2022-03-02
Authors: Zheng, Q., Zhu, R., Sun, H., Cheng, T., Li, S., Xia, N.
PDB entry 7x4l: Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase mutant Y303F-PLP complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-03-02
Authors: Liu, S., Guoming, D., Yulu, W., Boting, W., Xin, F.
PDB entry 7x4m: Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 8A10 (classified from CVB1 mature virion in complex with 8A10, 2E6 and 9A3)
Classification: VIRUS
Source organism: Coxsackievirus B1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2022-03-02
Authors: Zheng, Q., Zhu, R., Sun, H., Cheng, T., Li, S., Xia, N.
PDB entry 7x4n: Crystal Structure of C. elegans kinesin-4 KLP-12 complexed with tubulin and DARPin
Classification: MOTOR PROTEIN
Source organism: Caenorhabditis elegans; Sus scrofa; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2022-03-03
Authors: Taguchi, S., Imasaki, T., Saijo-Hamano, Y., Sakai, N., Nitta, R.
PDB entry 7x4o: Crystal structure of Vps17p PX from S. cerevisiae (Space)
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-03-03
Authors: Maita, N., Kohda, D., Obita, T.
PDB entry 7x4p: CD-NTase EfCdnE in complex with intermediate pppUpU
Classification: TRANSFERASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-03-03
Authors: Chen, Y., Ko, T.P., Yang, C.S., Wang, Y.C., Hou, M.H.
PDB entry 7x4q: LpCdnE UTP Mg complex
Classification: TRANSFERASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-03-03
Authors: Chen, Y., Ko, T.P., Yang, C.S., Wang, Y.C., Hou, M.H.
PDB entry 7x4r: Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-03-03
Authors: Liu, S., Wang, Y., Du, G., Wen, B., Xin, F.
PDB entry 7x4s: Crystal structure of Rhodostomin ARGDMP mutant
Classification: BLOOD CLOTTING
Source organism: Calloselasma rhodostoma
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-03-03
Authors: Chang, Y.T., Chuang, W.J.
PDB entry 7x4t: LpCdnE UMPNPP Mg complex
Classification: TRANSFERASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-03-03
Authors: Chen, Y., Ko, T.P., Yang, C.S., Wang, Y.C., Hou, M.H.
PDB entry 7x4u: Crystal structure of ERK2 with an allosteric inhibitor 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-03-03
Authors: Yoshida, M., Kinoshita, T.
PDB entry 7x4v: Crystal structure of Rhodostomin ARGDDP mutant
Classification: BLOOD CLOTTING
Source organism: Calloselasma rhodostoma
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2022-03-03
Authors: Chang, Y.T., Chuang, W.J.
PDB entry 7x4w: Crystal structure of Keap1 BTB domain in complex with dimethyl fumarate (DMF)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.209 Å
Deposited: 2022-03-03
Authors: Qu, L.Z.
PDB entry 7x4x: BTB domain of KEAP1 in complex with MEF
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2022-03-03
Authors: Qu, L.Z.
PDB entry 7x4y: Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase BTGAD-PLP-GABA complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-03-03
Authors: Liu, S., Du, G., Wang, Y., Wen, B., Xin, F.
PDB entry 7x4z: Crystal structure of Rhodostomin ARGDWP mutant
Classification: BLOOD CLOTTING
Source organism: Calloselasma rhodostoma
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2022-03-03
Authors: Chang, Y.T., Chuang, W.J.
PDB entry 7x50: The 0.93 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with heneicosanoic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.93 Å
Deposited: 2022-03-03
Authors: Sugiyama, S., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.
PDB entry 7x51: Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase BTGAD-PLP-GUA complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-03-03
Authors: Liu, S., Du, G., Wang, L., Wen, B., Xin, F.
PDB entry 7x52: Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase BTGAD-PLP complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-03-03
Authors: Liu, S., Du, G., Wang, Y., Wen, B., Xin, F.
PDB entry 7x53: cytochrome P450 monooxygenase
Classification: TRANSFERASE
Source organism: Pseudomonas putida KT2440
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2022-03-03
Authors: Yan, Y., Zheng, C.
PDB entry 7x54: A Cbc-ParM filament with ADP
Classification: CELL CYCLE
Source organism: Clostridium botulinum Bf
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-03-04
Authors: Koh, A., Ali, S., Robinson, R., Narita, A.
PDB entry 7x55: A Cbc-ParM filament with GTP and a short incubation time
Classification: CELL CYCLE
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.6 Å
Deposited: 2022-03-04
Authors: Koh, A., Ali, S., Robinson, R., Narita, A.
PDB entry 7x56: A Cbc-ParM filament with GDP
Classification: CELL CYCLE
Source organism: Clostridium botulinum Bf
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-03-04
Authors: Koh, A., Ali, S., Robinson, R., Narita, A.
PDB entry 7x57: Cryo-EM structure of human subnucleosome (closed form)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2022-03-04
Authors: Nozawa, K., Takizawa, Y., Kurumizaka, H.
PDB entry 7x58: Cryo-EM structure of human subnucleosome (open form)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2022-03-04
Authors: Nozawa, K., Takizawa, Y., Kurumizaka, H.
PDB entry 7x59: A Cbc-ParM filament with GTP or GDPPi
Classification: CELL CYCLE
Source organism: Clostridium botulinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2022-03-04
Authors: Koh, A., Ali, S., Robinson, R., Narita, A.
PDB entry 7x5a: CryoEM structure of RuvA-Holliday junction complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2022-03-04
Authors: Lin, Z., Qu, Q., Zhang, X., Zhou, Z.
PDB entry 7x5b: Crystal structure of RuvB
Classification: MOTOR PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2022-03-04
Authors: Lin, Z., Qu, Q., Zhang, X., Zhou, Z., Dai, L.
PDB entry 7x5c: Solution structure of Tetrahymena p75OB1-p50PBM
Classification: REPLICATION
Source organism: Tetrahymena
Experimental method: SOLUTION NMR
Deposited: 2022-03-04
Authors: Wu, B., Tang, T., Xue, H.J., Wu, J., Lei, M.
PDB entry 7x5d: Crystal Structure of the K316C mutant of Human Lamin A/C Coil 2 (residues 244-340)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-03-04
Authors: Ahn, J., Jo, I., Ha, N.-C.
PDB entry 7x5e: Nrf2-MafG heterodimer bound with CsMBE1
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-03-04
Authors: Sengoku, T., Shiina, M., Suzuki, K., Hamada, K., Sato, K., Uchiyama, A., Okada, C., Baba, S., Ohta, T., Motohashi, H., Yamamoto, M., Ogata, K.
PDB entry 7x5f: Nrf2-MafG heterodimer bound with CsMBE2
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-03-04
Authors: Sengoku, T., Shiina, M., Suzuki, K., Hamada, K., Sato, K., Uchiyama, A., Okada, C., Baba, S., Ohta, T., Motohashi, H., Yamamoto, M., Ogata, K.
PDB entry 7x5g: Nrf2 (A510Y)-MafG heterodimer bound with CsMBE2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-03-04
Authors: Sengoku, T., Shiina, M., Suzuki, K., Hamada, K., Sato, K., Uchiyama, A., Okada, C., Baba, S., Ohta, T., Motohashi, H., Yamamoto, M., Ogata, K.
PDB entry 7x5h: Serotonin 5A (5-HT5A) receptor-Gi protein complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-03-04
Authors: Tan, Y., Xu, P., Huang, S., Xu, H.E., Jiang, Y.
PDB entry 7x5j: ACP-dependent oxoacyl reductase
Classification: OXIDOREDUCTASE
Source organism: Candidatus Methanoliparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-03-04
Authors: Wang, S., Bai, L.
PDB entry 7x5k: Tir-dsDNA complex, the initial binding state
Classification: HYDROLASE/DNA
Source organism: DNA molecule; Linum usitatissimum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-03-04
Authors: Tan, Y., Xu, C., Yu, D., Song, W., Wu, B., Schulze-Lefert, P., Chai, J.
PDB entry 7x5l: Tir-dsDNA complex, the initial binding state
Classification: HYDROLASE/DNA
Source organism: DNA molecule; Linum usitatissimum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2022-03-04
Authors: Tan, Y., Xu, C., Yu, D., Song, W., Wu, B., Schulze-Lefert, P., Chai, J.
PDB entry 7x5m: Tir-dsDNA complex, the initial binding state
Classification: HYDROLASE/DNA
Source organism: DNA molecule; Linum usitatissimum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2022-03-05
Authors: Tan, Y., Xu, C., Yu, D., Song, W., Wu, B., Schulze-Lefert, P., Chai, J.
PDB entry 7x5n: Crystal structure of E. faecium SHMT in complex with (+)-SHIN-1 and PLP-Ser
Classification: TRANSFERASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-03-05
Authors: Hasegawa, K., Hayashi, H.
PDB entry 7x5o: Crystal structure of E. faecium SHMT in complex with Me-THF and PLP-Gly
Classification: TRANSFERASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2022-03-05
Authors: Hasegawa, K., Hayashi, H.
PDB entry 7x5p: Truncated VhChiP (1-19aa) in complex with doxycycline
Classification: TRANSPORT PROTEIN
Source organism: Vibrio harveyi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-03-05
Authors: Sanram, S., Robinson, C.R., Aunkham, A., Suginta, W.
PDB entry 7x5q: Apo Truncated VhChiP (Delta 1-19) in complex with peptide (DGANSDAAK)
Classification: TRANSPORT PROTEIN
Source organism: Vibrio harveyi; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-03-05
Authors: Sanram, S., Aunkham, A., Suginta, W., Robinson, R.C.
PDB entry 7x5r: Crystal structure of AtHPPD-Lancotrione complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.644 Å
Deposited: 2022-03-05
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x5s: Crystal structure of AtHPPD-Y14157 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.706 Å
Deposited: 2022-03-05
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x5t: Structure of the C-terminal head domain of the fowl adenovirus type 4 fiber 1
Classification: VIRAL PROTEIN
Source organism: Fowl adenovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-03-05
Authors: Song, Y.P., Zhao, J.C., Liu, L., Li, X.S., Wei, Q.
PDB entry 7x5u: Crystal structure of AtHPPD-diketonitrile complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-03-05
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x5v: NaVEh Sodium channel, and NaVEh from the coccolithophore Emiliania huxleyi
Classification: TRANSPORT PROTEIN
Source organism: Emiliania huxleyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2022-03-05
Authors: Jiang, D., Zhang, J.
PDB entry 7x5w: Crystal structure of AtHPPD-Y18022 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.598 Å
Deposited: 2022-03-05
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x5x: Crystal structure of AtHPPD-YH20533 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.196 Å
Deposited: 2022-03-05
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x5y: Crystal structure of AtHPPD-Y14240 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.498 Å
Deposited: 2022-03-05
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x5z: Crystal structure of AtHPPD-Y13162 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.688 Å
Deposited: 2022-03-05
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x62: Crystal structure of AtHPPD-Y191051 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.004 Å
Deposited: 2022-03-06
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x63: SARS-CoV-2-Beta-RBD and BD-236-GWP/P-VK antibody complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2022-03-06
Authors: Shi, R., Wang, Y., Wu, Z., Han, X., Yan, J.
PDB entry 7x64: Crystal structure of AtHPPD-Y18027 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.288 Å
Deposited: 2022-03-06
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x66: SARS-CoV-2-Omicron-RBD and BD-236-GWP/P-VK antibody complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-03-06
Authors: Shi, R., Wang, Y., Wu, Z., Han, X., Yan, J.
PDB entry 7x67: Crystal structure of AtHPPD-Y18406 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.996 Å
Deposited: 2022-03-06
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x68: CYS179 and CYS504 of CRMP2 were covalently binded by a Sesquiterpene lactone
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-03-06
Authors: Zhang, S.D., Ma, Y.F., Zhang, J.
PDB entry 7x69: Crystal structure of AtHPPD-Y191053 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.797 Å
Deposited: 2022-03-06
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x6a: SARS-CoV-2 BA.2 variant spike protein in complex with Fab BD55-5840
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-03-07
Authors: Wang, X., Wang, L.
PDB entry 7x6c: Cryo-EM structure of the human TRPC5 ion channel in lipid nanodiscs, class1
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2022-03-07
Authors: Won, J., Jeong, H., Lee, H.H.
PDB entry 7x6f: Outer membrane lipoprotein QseG of Escherichia coli O157:H7
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-03-07
Authors: Matsumoto, K., Fukuda, Y., Inoue, T.
PDB entry 7x6g: Outer membrane lipoprotein QseG of Escherichia coli O157:H7
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-03-07
Authors: Matsumoto, K., Fukuda, Y., Inoue, T.
PDB entry 7x6h: Outer membrane lipoprotein QseG of Escherichia coli O157:H7
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-03-07
Authors: Matsumoto, K., Fukuda, Y., Inoue, T.
PDB entry 7x6i: Cryo-EM structure of the human TRPC5 ion channel in complex with G alpha i3 subunits, class1
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2022-03-07
Authors: Won, J., Jeong, H., Lee, H.H.
PDB entry 7x6j: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 3af
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-03-07
Authors: Su, H., Nie, T., Xie, H., Li, Z.W., Li, M.J., Xu, Y.
PDB entry 7x6k: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 3w
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2022-03-07
Authors: Su, H., Nie, T., Xie, H., Li, Z.W., Li, M.J., Xu, Y.
PDB entry 7x6l: Cryo-EM structure of H3 hemagglutinin from A/HongKong/01/1968 in complex with a neutralizing antibody 28-12
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Influenza A virus; Influenza A virus (A/Hong Kong/1/1968(H3N2))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-03-07
Authors: Cong, Y., Liu, C.X.
PDB entry 7x6m: Crystal structure of AtHPPD-Y191058 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.815 Å
Deposited: 2022-03-07
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x6n: Crystal structure of AtHPPD-Y191710 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.691 Å
Deposited: 2022-03-07
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x6o: Cryo-EM structure of H1 hemagglutinin from A/Washington/05/2011 in complex with a neutralizing antibody 28-12
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-03-07
Authors: Cong, Y., Liu, C.X.
PDB entry 7x6q: cryo-EM structure of human TRiC-ATP-closed state
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-03-08
Authors: Cong, Y., Liu, C.X.
PDB entry 7x6r: Crystal structure of actinomycin D-echinomycin-d(AGCACGT/ACGGGCT) complex
Classification: DNA/ANTIBIOTIC
Source organism: Streptomyces; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-03-08
Authors: Kao, S.H., Satange, R.B., Hou, M.H.
PDB entry 7x6s: lymphocytic choriomeningitis virus RNA-dependent RNA polymerase (LCMV-L protein)
Classification: TRANSFERASE
Source organism: Lymphocytic choriomeningitis virus (strain Armstrong)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-03-08
Authors: Liu, L., Lou, Z.
PDB entry 7x6t: Discovery of Selective BRD4 BD1 Inhibitor Based on [1,2,4] triazolo [4,3-b] pyridazine Scaffold
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2022-03-08
Authors: Cao, D., Xiong, B.
PDB entry 7x6u: SFTSV 3 fold hexmer
Classification: VIRAL PROTEIN
Source organism: Severe fever with thrombocytopenia syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-03-08
Authors: Sun, Z., Lou, Z.
PDB entry 7x6v: lymphocytic choriomeningitis virus polymerase- Matrix Z Protein Complex (LCMV L-Z Complex)
Classification: METAL BINDING PROTEIN/TRANSFERASE
Source organism: Lymphocytic choriomeningitis virus (strain Armstrong)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-03-08
Authors: Liu, L., Lou, Z.
PDB entry 7x6w: SFTSV 2 fold hexamer
Classification: VIRAL PROTEIN
Source organism: Severe fever with thrombocytopenia syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.18 Å
Deposited: 2022-03-08
Authors: Sun, Z., Lou, Z.
PDB entry 7x6y: TRIM7 in complex with C-terminal peptide of NSP5
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-03-08
Authors: Zhang, H., Liang, X., Li, X.Z.
PDB entry 7x6z: TRIM7 in complex with C-terminal peptide of NSP12
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2022-03-08
Authors: Zhang, H., Liang, X., Li, X.Z.
PDB entry 7x70: TRIM7 in complex with C-terminal peptide of NSP8
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2022-03-08
Authors: Zhang, H., Liang, X., Li, X.Z.
PDB entry 7x72: SFTSV 5 fold pentamer
Classification: VIRAL PROTEIN
Source organism: Severe fever with thrombocytopenia syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.2 Å
Deposited: 2022-03-08
Authors: Sun, Z., Lou, Z.
PDB entry 7x73: Structure of G9a in complex with RK-701
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2022-03-09
Authors: Niwa, H., Shirai, F., Sato, S., Nishigaya, Y., Shirouzu, M., Umehara, T.
PDB entry 7x74: Cryo-EM structure of Streptomyces coelicolor transcription initial complex with two Zur dimers.
Classification: DNA BINDING PROTEIN
Source organism: Streptomyces coelicolor A3(2); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-03-09
Authors: Yang, X., Zheng, J.
PDB entry 7x75: Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with three Zur dimers
Classification: GENE REGULATION
Source organism: Streptomyces coelicolor A3(2); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2022-03-09
Authors: Yang, X., Zheng, J.
PDB entry 7x76: Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with two Zur dimers
Classification: DNA BINDING PROTEIN
Source organism: Streptomyces coelicolor A3(2); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2022-03-09
Authors: Yang, X., Zheng, J.
PDB entry 7x77: Ectodomain structure of per os infectivity factor 5
Classification: MEMBRANE PROTEIN
Source organism: Autographa californica multiple nucleopolyhedrovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-03-09
Authors: Cao, S., Li, Z., Fu, Y.
PDB entry 7x78: L-fuculose 1-phosphate aldolase
Classification: LYASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-03-09
Authors: Lou, X., Zhang, Q., Bartlam, M.
PDB entry 7x79: The crystal structure of human Calpain-1 protease core in complex with 14b
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-03-09
Authors: Zhao, Y., Zhao, J., Shao, M., Yang, H., Rao, Z.
PDB entry 7x7a: Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-03-09
Authors: Yu, G., Wang, X., Deng, Z., Zhang, H.
PDB entry 7x7d: SARS-CoV-2 Delta RBD and Nb22
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2022-03-09
Authors: Wang, Y., Ye, S.
PDB entry 7x7e: SARS-CoV-2 RBD and Nb22
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lama; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2022-03-09
Authors: Wang, Y., Ye, S.
PDB entry 7x7g: Crystal structure of a dimeric interlocked parallel G-quadruplex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-03-09
Authors: Ngo, K.H., Liew, C.W., Lattmann, S., Winnerdy, F.R., Phan, A.T.
PDB entry 7x7h: Crystal structure of Fructose regulator/Histidine phosphocarrier protein complex from Vibrio cholerae
Classification: GENE REGULATION/TRANSFERASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-03-09
Authors: Kim, M.-K., Zhang, J., Yoon, C.-K., Seok, Y.-J.
PDB entry 7x7i: Ancestral L-Lys oxidase (AncLLysO-2) ligand free form
Classification: OXIDOREDUCTASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-03-09
Authors: Motoyama, T., Ishida, C., Hasebe, F., Ito, S., Nakano, S.
PDB entry 7x7j: Ancestral L-Lys oxidase (AncLLysO-2) L-Lys binding form
Classification: OXIDOREDUCTASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-03-09
Authors: Motoyama, T., Ishida, C., Hasebe, F., Ito, S., Nakano, S.
PDB entry 7x7k: Ancestral L-Lys oxidase (AncLLysO-2) L-Arg binding form
Classification: OXIDOREDUCTASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-03-09
Authors: Motoyama, T., Ishida, C., Hasebe, F., Ito, S., Nakano, S.
PDB entry 7x7l: Crystal structure of ZmHPPD-Y13161 complex
Classification: OXIDOREDUCTASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.887 Å
Deposited: 2022-03-09
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 7x7m: Lumazine Synthase from Aquifex aeolicus
Classification: TRANSFERASE
Source organism: Aquifex aeolicus VF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2022-03-09
Authors: Sobhy, M.A., Hamdan, S.M.
PDB entry 7x7n: 3D model of the 3-RBD up single trimeric spike protein of SARS-CoV2 in the presence of synthetic peptide SIH-5.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.47 Å
Deposited: 2022-03-10
Authors: Khatri, B., Pramanick, I., Malladi, S.K., Rajmani, R.S., Kumar, S., Ghosh, P., Sengupta, N., Rahisuddin, R., Kumaran, S., Ringe, R.P., Varadarajan, R., Dutta, S., Chatterjee, J.
PDB entry 7x7o: SARS-CoV-2 spike RBD in complex with neutralizing antibody UT28K
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.75 Å
Deposited: 2022-03-10
Authors: Ozawa, T., Tani, H., Anraku, Y., Kita, S., Igarashi, E., Saga, Y., Inasaki, N., Kawasuji, H., Yamada, H., Sasaki, S., Somekawa, M., Sasaki, J., Hayakawa, Y., Yamamoto, Y., Morinaga, Y., Kurosawa, N., Isobe, M., Fukuhara, H., Maenaka, K., Hashiguchi, T., Kishi, H., Kitajima, I., Saito, S., Niimi, H.
PDB entry 7x7p: CryoEM structure of dsDNA-RuvB-RuvA domain3 complex
Classification: MOTOR PROTEIN/DNA
Source organism: Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.02 Å
Deposited: 2022-03-10
Authors: Lin, Z., Qu, Q., Zhang, X., Zhou, Z.
PDB entry 7x7q: CryoEM structure of RuvA-RuvB-Holliday junction complex
Classification: RECOMBINATION/DNA
Source organism: Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.02 Å
Deposited: 2022-03-10
Authors: Lin, Z., Qu, Q., Zhang, X., Zhou, Z.
PDB entry 7x7r: Cryo-EM structure of a bacterial protein
Classification: RNA/RNA BINDING PROTEIN
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-03-10
Authors: Yu, G., Wang, X., Deng, Z., Zhang, H.
PDB entry 7x7s: Solution structure of human adenylate kinase 1 (hAK1)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2022-03-10
Authors: Zhang, H.
PDB entry 7x7t: Cryo-EM structure of SARS-CoV-2 spike protein in complex with three nAbs X01, X10 and X17
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-03-10
Authors: Sun, H., Liu, L., Zheng, Q., Li, S., Zhang, T., Xia, N.
PDB entry 7x7u: Cryo-EM structure of SARS-CoV-2 Delta variant spike protein in complex with three nAbs X01, X10 and X17
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2022-03-10
Authors: Sun, H., Liu, L., Zhang, T., Zheng, Q., Li, S., Xia, N.
PDB entry 7x7v: Cryo-EM structure of SARS-CoV spike protein in complex with three nAbs X01, X10 and X17
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2022-03-10
Authors: Sun, H., Liu, L., Zhang, T., Zheng, Q., Li, S., Xia, N.
PDB entry 7x7w: The X-ray Crystallographic Structure of D-Psicose 3-epimerase from Clostridia bacterium
Classification: ISOMERASE
Source organism: Clostridia bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.097 Å
Deposited: 2022-03-10
Authors: Li, Z.F., Ban, X.F., Xie, X.F., Tian, Y.X., Li, C.M., Gu, Z.B.
PDB entry 7x7x: Human serum albumin complex with deschloro-aripiprazole
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-03-10
Authors: Kawai, A., Otagiri, M.
PDB entry 7x7y: Cryo-EM structure of Human TRiC-ATP-open state
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-03-10
Authors: Cong, Y., Liu, C.X.
PDB entry 7x7z: The crystal structure of 2+2/4+2 cyclase PloI4
Classification: LYASE
Source organism: Micromonospora sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.903 Å
Deposited: 2022-03-10
Authors: Li, M., Pan, L.F.
PDB entry 7x80: The crystal structure of PloI4-C16M/D46A/I137V
Classification: LYASE
Source organism: Micromonospora sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-03-10
Authors: Li, M., Pan, L.F.
PDB entry 7x81: The crystal structure of PloI4-C16M/D46A/I137V in complex with exo-2+2 adduct
Classification: LYASE
Source organism: Micromonospora sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.104 Å
Deposited: 2022-03-10
Authors: Li, M., Pan, L.F.
PDB entry 7x83: Cryo-EM structure of the TMEM106B fibril from normal elder
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-03-11
Authors: Xia, W.C., Zhao, Q.Y., Fan, Y., Sun, Y.P., Tao, Y.Q., Liu, C.
PDB entry 7x84: Cryo-EM structure of the TMEM106B fibril from Parkinson's disease dementia
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-03-11
Authors: Zhao, Q.Y., Xia, W.C., Fan, Y., Sun, Y.P., Tao, Y.Q., Liu, C.
PDB entry 7x85: Crystal structure of chicken CENP-C Cupin domain
Classification: CELL CYCLE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.639 Å
Deposited: 2022-03-11
Authors: Ariyoshi, M., Hara, M., Fukagawa, T.
PDB entry 7x86: The crystal structure of PloI4-F124L in complex with endo-4+2 adduct
Classification: LIGASE
Source organism: Micromonospora sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.303 Å
Deposited: 2022-03-11
Authors: Li, M., Pan, L.F.
PDB entry 7x87: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with sophotetraose observed as sophorose
Classification: TRANSFERASE
Source organism: Ignavibacterium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-03-11
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7x88: Crystal structure of ENL YEATS domain T2 mutant in complex with histone H3 acetylation at K27
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-03-11
Authors: Li, Y.Y., Li, H.T.
PDB entry 7x89: Tid1
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2022-03-11
Authors: Jang, J., Lee, S.H., Kang, D.H., Sim, D.W., Jo, K.S., Ryu, H., Kim, E.H., Ryu, K.S., Lee, J.H., Kim, J.H., Won, H.S.
PDB entry 7x8a: Cryo-EM structure of a bacterial protein complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-03-11
Authors: Yu, G., Wang, X., Deng, Z., Zhang, H.
PDB entry 7x8b: Crystal structure of ENL T1 mutant YEATS domain in complex with histone H3 acetylation at K27
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-03-11
Authors: Li, Y., Peng, B., Li, H.
PDB entry 7x8c: Crystal structure of a KTSC family protein from Euryarchaeon Methanolobus vulcani
Classification: DNA BINDING PROTEIN
Source organism: Methanolobus vulcani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2022-03-12
Authors: Zhang, Z.F., Zhu, K.L., Chen, Y.Y., Cao, P., Gong, Y.
PDB entry 7x8d: Crystal structure of AtHPPD-phenylpyruvate complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.695 Å
Deposited: 2022-03-12
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 7x8e: Crystal structure of PfHPPD-Y13287 complex
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.749 Å
Deposited: 2022-03-12
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 7x8f: Crystal structure of ENL T4 mutant YEATS domain in complex with histone H3 acetylation at K27
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2022-03-12
Authors: Li, Y., Peng, B., Li, H.
PDB entry 7x8g: Crystal structure of ENL T1(H116P) mutant YEATS domain in complex with histone H3 acetylation at K27
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-03-12
Authors: Li, Y., Peng, B., Li, H.
PDB entry 7x8h: Crystal structure of AtHPPD-(+)-Usnic acid complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.986 Å
Deposited: 2022-03-13
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 7x8i: Crystal structure of AtHPPD-Shikonin complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.096 Å
Deposited: 2022-03-13
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 7x8j: Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (unliganded)
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.798 Å
Deposited: 2022-03-13
Authors: Zhao, S., Zhang, C., Liu, L.
PDB entry 7x8k: Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (product-bound)
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-03-13
Authors: Zhao, S., Zhang, C., Liu, L.
PDB entry 7x8l: Microbial family VII carboxylesterase E93 Wild-type
Classification: HYDROLASE
Source organism: Altericroceibacterium indicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2022-03-13
Authors: Li, Y., Zhen, R., Li, J., Xu, X.
PDB entry 7x8m: NMR Solution Structure of the 2:1 Berberine-KRAS-G4 Complex
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-03-14
Authors: Wang, K.B., Liu, Y., Li, J., Xiao, C., Gu, W., Li, Y., Xia, Y.Z., Yan, T., Yang, M.H., Kong, L.Y.
PDB entry 7x8n: NMR Solution Structure of the Wild-type Bulge-containing KRAS-G4
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-03-14
Authors: Wang, K.B., Liu, Y., Li, J., Xiao, C., Gu, W., Li, Y., Xia, Y.Z., Yan, T., Yang, M.H., Kong, L.Y.
PDB entry 7x8o: NMR Solution Structure of the 2:1 Coptisine-KRAS-G4 Complex
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-03-14
Authors: Wang, K.B., Liu, Y., Li, J., Xiao, C., Gu, W., Li, Y., Xia, Y.Z., Yan, T., Yang, M.H., Kong, L.Y.
PDB entry 7x8p: Frizzled 2 CRD in complex with pF7_A5 Fab
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2022-03-14
Authors: Ge, Q., Wang, Q.
PDB entry 7x8q: Frizzled-10 CRD in complex with F10_A9 Fab
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-03-14
Authors: Ge, Q., Wang, Q.
PDB entry 7x8r: Cryo-EM structure of the Boc5-bound hGLP-1R-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2022-03-14
Authors: Cong, Z.T., Zhou, Q.T., Li, Y., Chen, L.N., Zhang, Z.C., Liang, A.Y., Liu, Q., Wu, X.Y., Dai, A.T., Xia, T., Wu, W., Zhang, Y., Yang, D.H., Wang, M.W.
PDB entry 7x8s: Cryo-EM structure of the WB4-24-bound hGLP-1R-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-03-14
Authors: Cong, Z.T., Zhou, Q.T., Li, Y., Chen, L.N., Zhang, Z.C., Liang, A.Y., Liu, Q., Wu, X.Y., Dai, A.T., Xia, T., Wu, W., Zhang, Y., Yang, D.H., Wang, M.W.
PDB entry 7x8t: Frizzled 10 CRD in complex with hB9L9.3 Fab
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2022-03-14
Authors: Ge, Q., Wang, Q.
PDB entry 7x8u: Crystal structure of the N-terminal Solanaceae domain of the Sw-5b NLR immune receptor
Classification: PLANT PROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-03-14
Authors: Li, J., Xin, J., Xing, W., Tao, X.
PDB entry 7x8v: Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity
Classification: IMMUNE SYSTEM
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-03-15
Authors: Ichimaru, K., Harada, K., Yamaguchi, K., Shigeta, S., Shimada, K., Ishikawa, K., Inoue, K., Nishio, Y., Yoshimura, S., Inoue, H., Yamashita, E., Fujiwara, T., Nakagawa, A., Kojima, C., Kawasaki, T.
PDB entry 7x8w: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab354
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x8x: structural insights into Mycobacterium tuberculosis ClpP1P2 inhibition by Cediranib: implications for developing antimicrobial agents targeting Clp protease
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Mycobacterium tuberculosis; Mycobacterium tuberculosis CDC1551; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2022-03-15
Authors: Bao, R., Luo, Y.F., Zhu, Y.B., Yang, Y., Zhou, Y.Z.
PDB entry 7x8y: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab159
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x8z: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab188
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x90: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab326
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x91: The SARS-CoV-2 receptor binding domain bound with an Fv-clasp form of a human neutralizing antibody Ab496
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x92: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab445
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x93: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab765
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x94: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab712
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x95: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab709
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.
PDB entry 7x96: The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab847
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-03-15
Authors: Kamada, K., Shirouzu, M.