LiteFold/PDB huggingface dataset:
PDB entry 5ddi: Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from pig muscle - holo enzyme - at 2.40 Angstrom resolution
Classification: OXIDOREDUCTASE, TRANSFERASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-24
Authors: Dimova, M., Devedjiev, Y.D.
PDB entry 5ddj: Crystal structure of recombinant foot-and-mouth-disease virus O1M-S2093Y empty capsid
Classification: VIRUS
Source organism: Foot-and-mouth disease virus - type O
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2015-08-25
Authors: Kotecha, A., Seago, J., Scott, K., Burman, A., Loureiro, S., Ren, J., Porta, C., Ginn, H.M., Jackson, T., Perez-Martin, E., Siebert, C.A., Paul, G., Huiskonen, J.T., Jones, I.M., Esnouf, R.M., Fry, E.E., Maree, F.F., Charleston, B., Stuart, D.I.
PDB entry 5ddk: Succinyl-CoA:acetate CoA-transferase (AarCH6-N347A) in complex with CoA
Classification: TRANSFERASE
Source organism: Acetobacter aceti 1023
Experimental method: X-RAY DIFFRACTION
Resolution: 2.127 Å
Deposited: 2015-08-25
Authors: Kappock, T.J., Mullins, E.A., Murphy, J.R.
PDB entry 5ddl: Crystal Structure of WT Human Glutathione Transferase Pi soaked with a metalloid then back-soaked with glutathione
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2015-08-25
Authors: Parker, L.J., Parker, M.W., Morton, C.J.
PDB entry 5ddm: Human DNA polymerase lambda- Apoenzyme and complex with 6 paired DNA
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.802 Å
Deposited: 2015-08-25
Authors: Liu, M.S., Tsai, M.D.
PDB entry 5ddo: Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; Synechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2015-08-25
Authors: Ren, A., Patel, D.
PDB entry 5ddp: L-glutamine riboswitch bound with L-glutamine
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; Synechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.302 Å
Deposited: 2015-08-25
Authors: Ren, A., Patel, D.J.
PDB entry 5ddq: L-glutamine riboswitch bound with L-glutamine soaked with Mn2+
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; Synechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-25
Authors: Ren, A., Patel, D.J.
PDB entry 5ddr: L-glutamine riboswitch bound with L-glutamine soaked with Cs+
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; Synechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.605 Å
Deposited: 2015-08-25
Authors: Ren, A., Patel, D.J.
PDB entry 5dds: Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with PLP
Classification: TRANSFERASE
Source organism: Actinoalloteichus sp. WH1-2216-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-08-25
Authors: Xu, J., Feng, Z., Liu, J.
PDB entry 5ddt: Crystal structure of IspD from Bacillus subtilis at 1.80 Angstroms resolution, crystal form I
Classification: TRANSFERASE
Source organism: Bacillus subtilis (strain 168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-25
Authors: Jin, Y., Liu, Z.C., Wang, G.G.
PDB entry 5ddu: Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with PMP
Classification: TRANSFERASE
Source organism: Actinoalloteichus sp. WH1-2216-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2015-08-25
Authors: Xu, J., Feng, Z., Liu, J.
PDB entry 5ddv: Crystal structure of IspD from Bacillus subtilis at 2.30 Angstroms resolution, crystal form II
Classification: TRANSFERASE
Source organism: Bacillus subtilis (strain 168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-08-25
Authors: Jin, Y., Liu, Z.C., Wang, G.G.
PDB entry 5ddw: Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with the PMP external aldimine adduct with Caerulomycin M
Classification: TRANSFERASE
Source organism: Actinoalloteichus sp. WH1-2216-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-08-25
Authors: Xu, J., Feng, Z., Liu, J.
PDB entry 5ddy: Binary complex of human Polymerase lambda with dCTP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2015-08-25
Authors: Liu, M.S., Tsai, M.D.
PDB entry 5ddz: Crystal structure of the RTA-c10-P2 complex
Classification: HYDROLASE/PEPTIDE
Source organism: Homo sapiens; Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-25
Authors: Zhu, Y., Fan, X., Wang, C., Niu, L., Li, X., Teng, M.
PDB entry 5de0: Dye-decolorizing protein from V. cholerae
Classification: OXIDOREDUCTASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2015-08-25
Authors: Uchida, T., Sasaki, M., Tanaka, Y., Yao, M.
PDB entry 5de1: Crystal structure of human IDH1 in complex with GSK321A
Classification: Oxidoreductase/Oxidoreductase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-08-25
Authors: Concha, N.O., Smallwood, A., Qi, H.
PDB entry 5de2: Structural mechanism of Nek7 activation by Nek9-induced dimerisation
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2015-08-25
Authors: Haq, T., Bayliss, R.
PDB entry 5de3: The Crystal structure of Chlamydomonas reinhardtii Arl3 bound to GppNHp
Classification: HYDROLASE
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.417 Å
Deposited: 2015-08-25
Authors: Gotthardt, K., Lokaj, M., Wittinghofer, A.
PDB entry 5de5: Crystal structure of the complex between human FMRP RGG motif and G-quadruplex RNA.
Classification: RNA binding protein/RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.0011 Å
Deposited: 2015-08-25
Authors: Vasilyev, N., Polonskaia, A., Darnell, J.C., Darnell, R.B., Patel, D.J., Serganov, A.
PDB entry 5de8: Crystal structure of the complex between human FMRP RGG motif and G-quadruplex RNA, iridium hexammine bound form.
Classification: RNA binding protein/RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1003 Å
Deposited: 2015-08-25
Authors: Vasilyev, N., Polonskaia, A., Darnell, J.C., Darnell, R.B., Patel, D.J., Serganov, A.
PDB entry 5de9: The role of Ile87 of CYP158A2 in oxidative coupling reaction
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2015-08-25
Authors: Zhao, B.
PDB entry 5dea: Crystal structure of the complex between human FMRP RGG motif and G-quadruplex RNA, cesium bound form.
Classification: RNA binding protein/RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7973 Å
Deposited: 2015-08-25
Authors: Vasilyev, N., Polonskaia, A., Darnell, J.C., Darnell, R.B., Patel, D.J., Serganov, A.
PDB entry 5deb: 2009 H1N1 PA endonuclease mutant E119D in complex with rUMP
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2015-08-25
Authors: Kumar, G., White, S.W.
PDB entry 5dec: Crystal structure of the small alarmone synthetase 1 from Bacillus subtilis
Classification: TRANSFERASE
Source organism: Bacillus subtilis (strain 168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-25
Authors: Steinchen, W., Altegoer, A., Schuhmacher, J.S., Bange, G.
PDB entry 5ded: Crystal structure of the small alarmone synthethase 1 from Bacillus subtilis bound to its product pppGpp
Classification: TRANSFERASE
Source organism: Bacillus subtilis PY79
Experimental method: X-RAY DIFFRACTION
Resolution: 2.942 Å
Deposited: 2015-08-25
Authors: Steinchen, W., Schuhmacher, J.S., Altegoer, F., Bange, G.
PDB entry 5def: Crystal structure of B*27:04 complex bound to the pVIPR peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-25
Authors: Loll, B., Fabian, H., Huser, H., Hee, C.S., Uchanska-Ziegler, B., Ziegler, A.
PDB entry 5deg: Crystal structure of B*27:06 bound to the pVIPR peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2015-08-25
Authors: Loll, B., Fabian, H., Hee, C.S., Huser, H., Uchanska-Ziegler, B., Ziegler, A.
PDB entry 5deh: Crystal structure of Staphylococcal nuclease variant Delta+PHS N100D at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-25
Authors: Skerritt, L.A., Bell-Upp, P.C., Siegler, M.A., Schlessman, J.L., Garcia-Moreno E., B.
PDB entry 5dei: BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2015-08-25
Authors: Bera, A.K., Hasson, M.S.
PDB entry 5dej: Transthyretin natural mutant A19D
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2015-08-25
Authors: Pereira, H.M., Ferreira, P., Andrade, C., Lima, C., Palhano, F., Foguel, D.
PDB entry 5dek: RNA octamer containing dT
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.993 Å
Deposited: 2015-08-25
Authors: Harp, J.M., Egli, M.
PDB entry 5del: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM59
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-08-25
Authors: Phillips, M., Deng, X.
PDB entry 5dem: Structure of Pseudomonas aeruginosa LpxA
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa (strain PA7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2015-08-25
Authors: Smith, E.W., Chen, Y.
PDB entry 5den: The First Structure of a Full-Length Mammalian Phenylalanine Hydroxylase Reveals the Architecture of an Auto-inhibited Tetramer
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-08-25
Authors: Arturo, E.C., Loll, P.J., Jaffe, E.K.
PDB entry 5deo: Mycobacterium abscessus NadD in complex with nicotinic acid adenine dinucleotide
Classification: TRANSFERASE
Source organism: Mycobacterium abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2015-08-25
Authors: Reed, R.W., Korotkov, K.V., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 5dep: Structure of Pseudomonas aeruginosa LpxA in complex with UDP-GlcNAc
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa (strain PA7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2015-08-25
Authors: Smith, E.W., Chen, Y.
PDB entry 5deq: Crystal structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI in complex with L-arabinose
Classification: TRANSCRIPTION REGULATOR
Source organism: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2015-08-25
Authors: Chang, C., Tesar, C., Rodionov, D., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 5der: RNA oligonucleotide containing (R)-C5'-ME-2'F U
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-25
Authors: Harp, J.M., Egli, M.
PDB entry 5des: 2009 H1N1 PA endonuclease domain
Classification: HYDROLASE
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-08-25
Authors: Kumar, G., White, S.W.
PDB entry 5det: X-ray structure of human RBPMS in complex with the RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2015-08-25
Authors: Teplova, M., Farazi, T.A., Tuschl, T., Patel, D.J.
PDB entry 5deu: Crystal structure of TET2-5hmC complex
Classification: oxidoreductase/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2015-08-26
Authors: Hu, L., Cheng, J., Rao, Q., Li, Z., Li, J., Xu, Y.
PDB entry 5dev: High resolution structure of CCG DNA repeats at 1.71 angstrom resolution
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2015-08-26
Authors: Hou, M.H., Jhan, C.R.
PDB entry 5dew: Crystal structure of PAK1 in complex with an inhibitor compound 5
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-26
Authors: Oh, A., Tam, C., Wang, W.
PDB entry 5dex: Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, phenyl-ACEPC
Classification: TRANSPORT PROTEIN, RECEPTOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-26
Authors: Mou, T.-C., Conti, P., Pinto, A., Tamborini, L., Sprang, S.R., Hansen, K.B.
PDB entry 5dey: Crystal structure of PAK1 in complex with an inhibitor compound G-5555
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-08-26
Authors: Oh, A., Tam, C., Wang, W.
PDB entry 5dez: Crystal structure of AcMNPV Chitinase A
Classification: HYDROLASE
Source organism: Autographa californica nuclear polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-08-26
Authors: Mou, T.-C., Sprang, S.R.
PDB entry 5df0: Crystal structure of AcMNPV Chitinase A in complex WITH CHITOTRIO-THIAZOLINE DITHIOAMIDE
Classification: HYDROLASE
Source organism: Autographa californica nuclear polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.251 Å
Deposited: 2015-08-26
Authors: Mou, T.-C., Sprang, S.R.
PDB entry 5df1: Iridoid synthase from Catharanthus roseus - ternary complex with NADP+ and geranic acid
Classification: OXIDOREDUCTASE
Source organism: Catharanthus roseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2015-08-26
Authors: Caputi, L., Kries, H., Stevenson, C.E.M., Kamileen, M.O., Sherden, N.H., Geu-Flores, F., Lawson, D.M., O'Connor, S.E.
PDB entry 5df5: The structure of oxidized rat cytochrome c (T28E) at 1.30 angstroms resolution.
Classification: ELECTRON TRANSPORT
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.301 Å
Deposited: 2015-08-26
Authors: Edwards, B.F.P., Mahapatra, G., Vaishnav, A.A., Brunzelle, J.S., Huttemann, M.
PDB entry 5df6: Crystal structure of PTPN11 tandem SH2 domains in complex with a TXNIP peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2015-08-26
Authors: Dong, A., Li, W., Tempel, W., Liu, Y., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
PDB entry 5df7: CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH AZLOCILLIN
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-26
Authors: Ren, J., Nettleship, J.E., Males, A., Stuart, D.I., Owens, R.J.
PDB entry 5df8: CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH CEFOPERAZONE
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-26
Authors: Ren, J., Nettleship, J.E., Males, A., Stuart, D.I., Owens, R.J.
PDB entry 5df9: CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 IN COMPLEX WITH DEACYLATED PRODUCT OF CEFOPERAZONE
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-08-26
Authors: Ren, J., Nettleship, J.E., Males, A., Stuart, D.I., Owens, R.J.
PDB entry 5dfa: 3D structure of the E323A catalytic mutant of Gan42B, a GH42 beta-galactosidase from G. stearothermophilus
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-08-26
Authors: Solomon, H.V., Tabachnikov, O., Lansky, S., Feinberg, H., Govada, L., Chayen, N.E., Shoham, Y., Shoham, G.
PDB entry 5dfb: Crystal structure of BRD2(BD2) mutant W370F in the free form
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-08-26
Authors: Tallant, C., Baud, M., Lin-Shiao, E., Chirgadze, D.Y., Ciulli, A.
PDB entry 5dfc: Crystal structure of BRD2(BD2) W370F mutant with ligand I-BET 762 bound
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-26
Authors: Tallant, C., Baud, M., Lin-Shiao, E., Chirgadze, D.Y., Ciulli, A.
PDB entry 5dfd: Crystal structure of BRD2(BD2) W370F mutant with ligand 28 bound
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-26
Authors: Tallant, C., Baud, M., Lin-Shiao, E., Chirgadze, D.Y., Ciulli, A.
PDB entry 5dfe: 70S termination complex containing E. coli RF2
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli (strain K12); Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09998 Å
Deposited: 2015-08-26
Authors: Hoffer, E.D., Dunham, C.M.
PDB entry 5dff: Human APE1 product complex
Classification: LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2015-08-26
Authors: Freudenthal, B.D., Wilson, S.H.
PDB entry 5dfg: Crystal structure of C-As lyase with mutations Y100H and V102F
Classification: LYASE
Source organism: Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9711 Å
Deposited: 2015-08-26
Authors: Venkadesh, S., Yoshinaga, M., Kandavelu, P., Sankaran, B., Rosen, B.P.
PDB entry 5dfh: Human APE1 mismatch product complex
Classification: LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.949 Å
Deposited: 2015-08-26
Authors: Freudenthal, B.D., Wilson, S.H.
PDB entry 5dfi: Human APE1 phosphorothioate substrate complex
Classification: LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2015-08-26
Authors: Freudenthal, B.D., Wilson, S.H.
PDB entry 5dfj: Human APE1 E96Q/D210N mismatch substrate complex
Classification: LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-08-26
Authors: Freudenthal, B.D., Wilson, S.H.
PDB entry 5dfk: Crystal Structure of the Escherichia coli Common Pilus Chaperone, EcpB
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-26
Authors: Garnett, J.A., Diallo, M., Matthews, S.J.
PDB entry 5dfl: Crystal structure of Ube2K~Ubiquitin conjugate
Classification: LIGASE/SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-08-27
Authors: Middleton, A.J., Day, C.L.
PDB entry 5dfm: Structure of Tetrahymena telomerase p19 fused to MBP
Classification: NUCLEAR PROTEIN
Source organism: Escherichia coli; Tetrahymena thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2015-08-27
Authors: Chan, H., Cascio, D., Sawaya, M.R., Feigon, J.
PDB entry 5dfn: Structure of Tetrahymena Telomerase P45 C-terminal domain
Classification: NUCLEAR PROTEIN
Source organism: Tetrahymena thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.382 Å
Deposited: 2015-08-27
Authors: Chan, H., Cascio, D., Sawaya, M.R., Feigon, J.
PDB entry 5dfp: Crystal structure of PAK1 in complex with an inhibitor compound FRAX1036
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-08-27
Authors: Maksimoska, J., Marmorstein, R., Wang, W.
PDB entry 5dfr: CRYSTAL STRUCTURE OF UNLIGANDED ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE. LIGAND-INDUCED CONFORMATIONAL CHANGES AND COOPERATIVITY IN BINDING
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1988-10-21
Authors: Bystroff, C., Kraut, J.
PDB entry 5dfs: Crystal structure of Spider Monkey Cytochrome C at 1.15 Angstrom
Classification: ELECTRON TRANSPORT
Source organism: Ateles sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2015-08-27
Authors: MOU, T.C., McClelland, L.J., Jeakins-Cooley, M.E., Goldes, M.E., SPRANG, S.R., BOWLER, B.E.
PDB entry 5dft: Structure of the Eleventh Type III Domain from Human Fibronectin
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-08-27
Authors: Rusnac, D.-V., Mou, T.C., Sprang, S.R., Briknarova, K.
PDB entry 5dfv: CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX WITH MURINE FAB FRAGMENT K04
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-08-27
Authors: Harris, S.F., Wong, A., Kuglstatter, A.
PDB entry 5dfw: CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX WITH SINGLE CHAIN FV FRAGMENT K13
Classification: CELL ADHESION
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2015-08-27
Authors: Harris, S.F., Villasenor, A., Kuglstatter, A.
PDB entry 5dfx: Structure of the parental state of GAF3 from Slr1393 of Synechocystis sp. PCC6803 (in vivo assembled protein/chromophore)
Classification: TRANSFERASE
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-27
Authors: Xu, X.-L., Zhao, K.-H., Gaertner, W., Hoeppner, A.
PDB entry 5dfy: Structure of the parental state of GAF3 from Slr1393 of Synechocystis sp. PCC6803 (in vitro assembled protein/chromophore)
Classification: TRANSFERASE
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-27
Authors: Xu, X.-L., Zhao, K.-H., Gaertner, W., Hoeppner, A.
PDB entry 5dfz: Structure of Vps34 complex II from S. cerevisiae.
Classification: TRANSFERASE
Source organism: Lama glama; Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 4.4 Å
Deposited: 2015-08-27
Authors: Rostislavleva, K., Soler, N., Ohashi, Y., Zhang, L., Williams, R.L.
PDB entry 5dg0: Human APE1 phosphorothioate substrate complex with Mn2+
Classification: HYDROLASE,LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-27
Authors: Freudenthal, B.D., Wilson, S.H.
PDB entry 5dg1: Sugar binding protein - human galectin-2
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-08-27
Authors: Su, J.Y., Si, Y.L.
PDB entry 5dg2: Sugar binding protein - human galectin-2 (dimer)
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.612 Å
Deposited: 2015-08-27
Authors: Su, J.Y., Si, Y.L.
PDB entry 5dg3: Structure of Pseudomonas aeruginosa LpxA in complex with UDP-3-O-(R-3-hydroxydecanoyl)-GlcNAc
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa (strain PA7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-08-27
Authors: Smith, E.W., Chen, Y.
PDB entry 5dg4: Crystal structure of monomer human cellular retinol binding protein II-Y60L
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-27
Authors: Assar, Z., Nossoni, Z., Wang, W., Gieger, J.H., Borhan, B.
PDB entry 5dg5: CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF THE HEPATOCYTE GROWTH FACTOR RECEPTOR C-MET IN COMPLEX WITH ALTIRATINIB ANALOG DP-4157
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-08-27
Authors: Smith, B.D., Kaufman, M.D., Leary, C.B., Turner, B.A., Wise, S.A., Ahn, Y.M., Booth, R.J., Caldwell, T.M., Ensinger, C.L., Hood, M.M., Lu, W.-P., Patt, T.W., Patt, W.C., Rutkoski, T.J., Samarakoon, T., Telikepalli, H., Vogeti, L., Vogeti, S., Yates, K.M., Chun, L., Stewart, L.J., Clare, M., Flynn, D.L.
PDB entry 5dg6: 2.35A resolution structure of Norovirus 3CL protease in complex an oxadiazole-based, cell permeable macrocyclic (21-mer) inhibitor
Classification: HYDROLASE/HYDROLASE Inhibitor
Source organism: Norwalk virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2015-08-27
Authors: Lovell, S., Battaile, K.P., Mehzabeen, N., Damalanka, V.C., Kim, Y., Alliston, K.R., Weerawarna, P.M., Kankanamalage, A.C.G., Lushington, G.H., Chang, K.-O., Groutas, W.C.
PDB entry 5dg7: CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dTTP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2015-08-27
Authors: Patra, A., Egli, M.
PDB entry 5dg8: CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dAMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2015-08-27
Authors: Patra, A., Egli, M.
PDB entry 5dg9: CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dGMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2015-08-27
Authors: Patra, A., Egli, M.
PDB entry 5dga: CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA EXTENDING AN 1,N6-ETHENODEOXYADENOSINE : dT PAIR BY INSERTING dTMPNPP OPPOSITE TEMPLATE dA
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-08-27
Authors: Patra, A., Egli, M.
PDB entry 5dgb: CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA EXTENDING AN 1,N6-ETHENODEOXYADENOSINE : dA PAIR BY INSERTING dTMPNPP OPPOSITE TEMPLATE dA
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2015-08-27
Authors: Patra, A., Egli, M.
PDB entry 5dgc: Reaction of phosphorylated CheY with imidazole 2 of 3
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2015-08-27
Authors: Page, S., Silversmith, R.E., Bourret, R.B., Collins, E.J.
PDB entry 5dgd: Benzoylformate decarboxylase F464I and A460V mutant from Pseudomonas putida
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2015-08-27
Authors: Bera, A.K., Hasson, M.S.
PDB entry 5dge: Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2015-08-27
Authors: Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.
PDB entry 5dgf: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2015-08-27
Authors: Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.
PDB entry 5dgg: Central domain of uncharacterized Lpg1148 protein from Legionella pneumophila
Classification: UNKNOWN FUNCTION
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2015-08-27
Authors: Osipiuk, J., Evdokimova, E., Yim, V., Joachimiak, A., Ensminger, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 5dgh: Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with AMP-PNP and 5-(PCP)-IP5
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-08-27
Authors: Wang, H., Shears, S.B.
PDB entry 5dgi: Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with ADP and 3,5-(PCP)2-IP4
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-08-27
Authors: Wang, H., Shears, S.B.
PDB entry 5dgj: 1.0A resolution structure of Norovirus 3CL protease in complex an oxadiazole-based, cell permeable macrocyclic (20-mer) inhibitor
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Norwalk virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2015-08-27
Authors: Lovell, S., Battaile, K.P., Mehzabeen, N., Damalanka, V.C., Kim, Y., Alliston, K.R., Weerawarna, P.M., Kankanamalage, A.C.G., Lushington, G.H., Chang, K.-O., Groutas, W.C.
PDB entry 5dgk: SCCmec type IV Cch - active helicase
Classification: REPLICATION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.895 Å
Deposited: 2015-08-27
Authors: Rice, P.A., Mir-Sanchis, I.
PDB entry 5dgm: Crystal structure of human FPPS in complex with monophosphonate compound 7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2015-08-28
Authors: Rondeau, J.M., Bourgier, E., Lehmann, S.
PDB entry 5dgn: Crystal structure of human FPPS in complex with compound 13
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2015-08-28
Authors: Rondeau, J.M., Bourgier, E., Lehmann, S.
PDB entry 5dgo: Crystal structure of cell division cycle protein 45 (Cdc45)
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-08-28
Authors: Simon, A.C., Pellegrini, L.
PDB entry 5dgq: Crystal structure of GH9 exo-beta-D-glucosaminidase PBPRA0520
Classification: HYDROLASE
Source organism: Photobacterium profundum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-28
Authors: Suzuki, K., Honda, Y., Fushinobu, S.
PDB entry 5dgr: Crystal structure of GH9 exo-beta-D-glucosaminidase PBPRA0520, glucosamine complex
Classification: HYDROLASE
Source organism: Photobacterium profundum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-28
Authors: Suzuki, K., Honda, Y., Fushinobu, S.
PDB entry 5dgs: Crystal structure of human FPPS in complex with the monophosphonate compound 15
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2015-08-28
Authors: Rondeau, J.M., Bourgier, E., Lehmann, S.
PDB entry 5dgt: BENZOYLFORMATE DECARBOXYLASE H70A MUTANT at pH 8.5 FROM PSEUDOMONAS PUTIDA
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.081 Å
Deposited: 2015-08-28
Authors: Bera, A.K., Hasson, M.S.
PDB entry 5dgu: Crystal Structure of HIV-1 Protease Inhibitors Containing Substituted fused-Tetrahydropyranyl Tetrahydrofuran as P2-Ligand GRL-004-11A
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2015-08-28
Authors: Agniswamy, J., Wang, Y.-F., Weber, I.T.
PDB entry 5dgv: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2015-08-28
Authors: Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.
PDB entry 5dgw: Crystal Structure of HIV-1 Protease Inhibitor GRL-105-11A Containing Substituted fused-Tetrahydropyranyl Tetrahydrofuran as P2-Ligand
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2015-08-28
Authors: Agniswamy, J., Wang, Y.-F., Weber, I.T.
PDB entry 5dgx: 1.73 Angstrom resolution crystal structure of the ABC-ATPase domain (residues 357-609) of lipid A transport protein (msbA) from Francisella tularensis subsp. tularensis SCHU S4 in complex with ADP
Classification: TRANSPORT PROTEIN
Source organism: Francisella tularensis subsp. tularensis (strain FSC 198)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2015-08-28
Authors: Halavaty, A.S., Minasov, G., Dubrovska, I., Kiryukhina, O., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 5dgy: Crystal structure of rhodopsin bound to visual arrestin
Classification: SIGNALING PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 7.7 Å
Deposited: 2015-08-28
Authors: Zhou, X.E., Gao, X., Kang, Y., He, Y., de Waal, P.W., Suino-Powell, K.M., Wang, M., Melcher, K., Xu, H.E.
PDB entry 5dgz: Discovery of 3,5-substituted 6-azaindazoles as potent pan-Pim inhibitors
Classification: Transferase/Transferase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.502 Å
Deposited: 2015-08-29
Authors: Murray, J.M., Wallweber, H., Steffek, M.
PDB entry 5dh0: Structure of the siderophore periplasmic binding protein from the fuscachelin gene cluster of Thermobifida fusca in P41
Classification: PROTEIN BINDING
Source organism: Thermobifida fusca (strain YX)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.444 Å
Deposited: 2015-08-29
Authors: Li, K., Bruner, S.D.
PDB entry 5dh1: Structure of the siderophore periplasmic binding protein from the fuscachelin gene cluster of Thermobifida fusca in P21
Classification: PROTEIN BINDING
Source organism: Thermobifida fusca (strain YX)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.842 Å
Deposited: 2015-08-29
Authors: Li, K., Bruner, S.D.
PDB entry 5dh2: Structure of the siderophore periplasmic binding protein from the fuscachelin gene cluster of Thermobifida fusca in I222
Classification: PROTEIN BINDING
Source organism: Thermobifida fusca (strain YX)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2015-08-29
Authors: Li, K., Bruner, S.D.
PDB entry 5dh3: Crystal structure of MST2 in complex with XMU-MP-1
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.468 Å
Deposited: 2015-08-29
Authors: Kong, L.L., Yun, C.H.
PDB entry 5dh4: PDE10 complexed with 5-chloro-N-[(2,4-dimethylthiazol-5-yl)methyl]pyrazolo[1,5-a]pyrimidin-7-amine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-08-29
Authors: Yan, Y.
PDB entry 5dh5: PDE10 complexed with N-[(1-methylpyrazol-4-yl)methyl]-5-[[(1S,2S)-2-(2-pyridyl)cyclopropyl]methoxy]pyrazolo[1,5-a]pyrimidin-7-amine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-29
Authors: Yan, Y.
PDB entry 5dh6: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mg2+
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.784 Å
Deposited: 2015-08-29
Authors: Mir, A., Chen, J., Neau, D., Golden, B.L.
PDB entry 5dh7: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.064 Å
Deposited: 2015-08-29
Authors: Mir, A., Chen, J., Neau, D., Golden, B.L.
PDB entry 5dh8: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction- G12A mutant in Zn2+
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.297 Å
Deposited: 2015-08-29
Authors: Mir, A., Chen, J., Neau, D., Golden, B.L.
PDB entry 5dh9: Crystal Structure of PKI NES Flip Mutant Peptide in complex with CRM1-Ran-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2015-08-30
Authors: Fung, H.Y., Chook, Y.M.
PDB entry 5dha: Crystal Structure of CPEB4 NES Reverse Mutant Peptide in complex with CRM1-Ran-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2015-08-30
Authors: Fung, H.Y., Chook, Y.M.
PDB entry 5dhb: Cooperativity and Downstream Binding in RNA Replication
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-30
Authors: Zhang, W., Fahrenbach, A.C., Tam, C.P., Szostak, J.W.
PDB entry 5dhc: Cooperativity and Downstream Binding in RNA Replication
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2015-08-30
Authors: Zhang, W., Fahrenbach, A.C., Tam, C.P., Szostak, J.W.
PDB entry 5dhd: Crystal structure of ChBD2 from Thermococcus kodakarensis KOD1
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis KOD1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2015-08-30
Authors: Hibi, M., Niwa, S., Takeda, K., Miki, K.
PDB entry 5dhe: Crystal structure of ChBD3 from Thermococcus kodakarensis KOD1
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis KOD1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-30
Authors: Niwa, S., Hibi, M., Takeda, K., Miki, K.
PDB entry 5dhf: Crystal Structure of hRio2 NES Peptide in complex with CRM1-Ran-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.285 Å
Deposited: 2015-08-30
Authors: Fung, H.Y., Chook, Y.M.
PDB entry 5dhg: The crystal structure of nociceptin/orphanin FQ peptide receptor (NOP) in complex with C-35 (PSI Community Target)
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-08-30
Authors: Miller, R.L., Thompson, A.A., Trapella, C., Guerrini, R., Malfacini, D., Patel, N., Han, G.W., Cherezov, V., Calo, G., Katritch, V., Stevens, R.C., GPCR Network (GPCR)
PDB entry 5dhh: The crystal structure of nociceptin/orphanin FQ peptide receptor (NOP) in complex with SB-612111 (PSI Community Target)
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.004 Å
Deposited: 2015-08-31
Authors: Miller, R.L., Thompson, A.A., Trapella, C., Guerrini, R., Malfacini, D., Patel, N., Han, G.W., Cherezov, V., Calo, G., Katritch, V., Stevens, R.C., GPCR Network (GPCR)
PDB entry 5dhi: Nicotiana tabacum 5-epi-aristolochene synthase mutant W273E - nonalkylated
Classification: LYASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-08-31
Authors: Noel, J.P., Kersten, R.D.
PDB entry 5dhj: PIM1 in complex with Cpd4 (3-methyl-5-(pyridin-3-yl)-1H-pyrazolo[3,4-c]pyridine)
Classification: Transferase/Transferase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.457 Å
Deposited: 2015-08-31
Authors: Murray, J.M., Wallweber, H.
PDB entry 5dhk: Nicotiana tabacum 5-epi-aristolochene synthase mutant W273E - alkylated
Classification: LYASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2015-08-31
Authors: Noel, J.P., Kersten, R.K.
PDB entry 5dhl: Crystal structure of Toxin, mutant N197W
Classification: TOXIN
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2015-08-31
Authors: Parker, M.W., Gorman, M.A., Lawrence, S.L.
PDB entry 5dhm: Crystal structure of the fimbrial protein Mfa4 from Porphyromonas gingivalis
Classification: CELL ADHESION
Source organism: Porphyromonas gingivalis ATCC 33277
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-31
Authors: Kloppsteck, P., Hall, M., Persson, K.
PDB entry 5dhp: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Classification: TRANSFERASE
Source organism: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2015-08-31
Authors: Gelin, M., Paoletti, J., Assairi, L., Huteau, V., Pochet, S., Labesse, G.
PDB entry 5dhq: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Classification: TRANSFERASE
Source organism: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2015-08-31
Authors: Gelin, M., Paoletti, J., Assairi, L., Huteau, V., Pochet, S., Labesse, G.
PDB entry 5dhr: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Classification: TRANSFERASE
Source organism: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2015-08-31
Authors: Gelin, M., Paoletti, J., Assairi, L., Huteau, V., Pochet, S., Labesse, G.
PDB entry 5dhs: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Classification: TRANSFERASE
Source organism: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2015-08-31
Authors: Gelin, M., Paoletti, J., Assairi, L., Huteau, V., Pochet, S., Labesse, G.
PDB entry 5dht: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Classification: TRANSFERASE
Source organism: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2015-08-31
Authors: Gelin, M., Paoletti, J., Assairi, L., Huteau, V., Pochet, S., Labesse, G.
PDB entry 5dhu: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Classification: TRANSFERASE
Source organism: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2015-08-31
Authors: Gelin, M., Paoletti, J., Assairi, L., Huteau, V., Pochet, S., Labesse, G.
PDB entry 5dhv: HIV-1 Rev NTD dimers with variable crossing angles
Classification: IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-08-31
Authors: DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C.
PDB entry 5dhx: HIV-1 Rev NTD dimers with variable crossing angles
Classification: IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-08-31
Authors: DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C.
PDB entry 5dhy: HIV-1 Rev NTD dimers with variable crossing angles
Classification: IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2015-08-31
Authors: DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C.
PDB entry 5dhz: HIV-1 Rev NTD dimers with variable crossing angles
Classification: IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.3 Å
Deposited: 2015-08-31
Authors: DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C.
PDB entry 5di0: Crystal structure of Dln1
Classification: SUGAR BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-31
Authors: Jia, N., Jiang, Y.L., Cheng, W., Wang, H.W., Zhou, C.Z., Chen, Y.
PDB entry 5di1: MAP4K4 in complex with an inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-08-31
Authors: Liu, S.
PDB entry 5di2: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at high pH
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.989 Å
Deposited: 2015-08-31
Authors: Mir, A., Chen, J., Neau, D., Golden, B.L.
PDB entry 5di3: Crystal structure of Arl13B in complex with Arl3 of Chlamydomonas reinhardtii
Classification: HYDROLASE
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-08-31
Authors: Gotthardt, K., Lokaj, M., Falk, N., Koerner, C., Giessl, A., Wittinghofer, A.
PDB entry 5di4: Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at low pH
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.948 Å
Deposited: 2015-08-31
Authors: Mir, A., Chen, J., Neau, D., Golden, B.L.
PDB entry 5di5: beta1 t801 loop variant in P3221
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2015-08-31
Authors: MacDonald, J.T., Kabasakal, B.V., Murray, J.W.
PDB entry 5di7: Crystal Structure of the ER-alpha Ligand-binding Domain in complex with an methyl-substituted A-CD ring estrogen derivative (1S,3aR,5S,7aS)-5-(4-hydroxy-2-methylphenyl)-7a-methyloctahydro-1H-inden-1-ol
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.241 Å
Deposited: 2015-08-31
Authors: Nwachukwu, J.C., Srinivasan, S., Zheng, Y., Wang, S., Min, J., Dong, C., Liao, Z., Cavett, V., Nowak, J., Houtman, R., Carlson, K.E., Josan, J.S., Elemento, O., Katzenellenbogen, J.A., Zhou, H.B., Nettles, K.W.
PDB entry 5di8: Fc Knob-Hole Heterodimer T366W + T366S/L368A/Y407V
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-31
Authors: Atwell, S., Leaver-Fay, A., Froning, K.J., Aldaz, H., Pustilnik, A., Lu, F., Huang, F., Yuan, R., Dhanani, S.H., Chamberlain, A.K., Fitchett, J.R., Gutierrez, B., Hendle, J., Secrist, E., Demarest, S.J., Kuhlman, B.