LiteFold/PDB huggingface dataset:
PDB entry 8d52: Parathyroid hormone 1 receptor extracellular domain complexed with a peptide ligand containing (2-naphthyl)-beta-3-homoalanine
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-06-03
Authors: Yu, Z., Kreitler, D.F., Gellman, S.H.
PDB entry 8d53: Crystal Structure of Mosaic HIV-1 Envelope (MosM3.3) in Complex with antibodies PGT124 and 35O22 at 3.25 Angstrom
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2022-06-03
Authors: Xian, Y., Wilson, I.A.
PDB entry 8d54: anti HIV gp120/CD4 complex antibody CG10 Fab
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-06-03
Authors: Yang, Z., Bjorkman, P.J.
PDB entry 8d55: Closed state of SARS-CoV-2 BA.2 variant spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-06-04
Authors: Zhang, J., Tang, W.C., Gao, H.L., Shi, W., Peng, H.Q., Volloch, S.R., Xiao, T.S., Chen, B.
PDB entry 8d56: One RBD-up state of SARS-CoV-2 BA.2 variant spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-06-04
Authors: Zhang, J., Tang, W.C., Gao, H.L., Shi, W., Peng, H.Q., Volloch, S.R., Xiao, T.S., Chen, B.
PDB entry 8d57: Crystal Structure of dihydrodipicolinate reductase from Acinetobacter baumannii
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-06-04
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8d58: Crystal structure of human METTL1-WDR4 complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2022-06-04
Authors: Raj, R., Babu, K., Nam, Y.
PDB entry 8d59: Crystal structure of human METTL1 in complex with SAM
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-06-04
Authors: Raj, R., Babu, K., Nam, Y.
PDB entry 8d5a: Middle state of SARS-CoV-2 BA.2 variant spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-04
Authors: Zhang, J., Tang, W.C., Gao, H.L., Shi, W., Peng, H.Q., Volloch, S.R., Xiao, T.S., Chen, B.
PDB entry 8d5b: Crystal structure of human METTL1 in complex with SAH
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-06-04
Authors: Raj, R., Babu, K., Nam, Y.
PDB entry 8d5c: anti-HIV-1 gp120-sCD4 complex antibody CG10 Fab in complex with B41-sCD4
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-06-04
Authors: Yang, Z., Bjorkman, P.J., Gershoni, J.M.
PDB entry 8d5d: Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-arginine
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-06-04
Authors: Phillips, R.S., Nguyen Hoang, K.N.
PDB entry 8d5e: The complex of Gtf2b Peptide TGAASFDEF Presented by H2-Dd
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2022-06-04
Authors: Custodio, J.M.F., Baker, B.M.
PDB entry 8d5f: The complex of Gtf2b neoantigen TGAARFDEF Presented by H2-Dd
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2022-06-04
Authors: Custodio, J.M.F., Baker, B.M.
PDB entry 8d5g: Crystal structure of dihydropteroate synthase (folP-SMZ_B27) from soil uncultured bacterium in complex with 6-hydroxymethyl-7,8-dihydropterin pyrophosphate
Classification: TRANSFERASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2022-06-04
Authors: Stogios, P.J., Skarina, T., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8d5h: Crystal structure of dihydropteroate synthase (folP-SMZ_B27) from soil uncultured bacterium in complex with 6-hydroxymethyl-7,8-dihydropterin
Classification: TRANSFERASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-06-04
Authors: Stogios, P.J., Skarina, T., Osipiuk, J., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8d5i: Crystal structure of dihydropteroate synthase H182G mutant (folP-SMZ_B27) from soil uncultured bacterium in complex with pteroic acid and pyrophosphate
Classification: TRANSFERASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-06-04
Authors: Stogios, P.J., Skarina, T., Kim, Y., Di Leo, R., Venkatesan, M., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8d5j: The complex of Pre-mRNA-Processing Factor 19 (Prpf19) neoantigen KYLQVASHV Presented by H2-Kd
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-06-04
Authors: Custodio, J.M.F., Baker, B.M.
PDB entry 8d5k: The complex of Pre-mRNA-Processing Factor 19 (Prpf19) peptide KYLQVASHV Presented by H2-Kd
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.066 Å
Deposited: 2022-06-05
Authors: Custodio, J.M.F., Baker, B.M.
PDB entry 8d5l: Crystal structure of theophylline aptamer in complex with TAL1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2022-06-05
Authors: Menichelli, E., Spraggon, G.
PDB entry 8d5n: Crystal structure of Ld-HF10
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Toxoplasma gondii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-06-05
Authors: Wang, Y., Dai, S.
PDB entry 8d5o: Crystal structure of theophylline aptamer in complex with TAL4
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-06-05
Authors: Menichelli, E., Spraggon, G.
PDB entry 8d5p: Mouse TCR TG6
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2022-06-05
Authors: Wang, Y., Dai, S.
PDB entry 8d5q: TCR TG6 in complex with Ld-HF10
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.501 Å
Deposited: 2022-06-05
Authors: Wang, Y., Dai, S.
PDB entry 8d5r: Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-ornithine
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2022-06-06
Authors: Phillips, R.S., Nguyen Hoang, K.N.
PDB entry 8d5s: Crystal structure of hen egg white lysozyme at 100 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d5t: Crystal structure of hen egg white lysozyme at 100 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d5u: Crystal structure of hen egg white lysozyme at 100 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.498 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d5v: WhiB6 bound to the SigmaAr4-RNAP Beta flap tip chimera
Classification: TRANSCRIPTION/Transferase
Source organism: Mycobacterium tuberculosis; Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-06-06
Authors: Wan, T., Zhang, L.M.
PDB entry 8d5w: Crystal structure of hen egg white lysozyme at 125 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d5x: Crystal structure of hen egg white lysozyme at 125 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d5z: Crystal structure of hen egg white lysozyme at 125 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d60: Crystal structure of hen egg white lysozyme at 150 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d61: Crystal structure of hen egg white lysozyme at 150 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d62: Crystal structure of hen egg white lysozyme at 150 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d63: ELIC apo in POPC nanodisc
Classification: STRUCTURAL PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-06-06
Authors: Petroff II, J.T., Deng, Z., Rau, M.J., Fitzpatrick, J.A.J., Yuan, P., Cheng, W.W.L.
PDB entry 8d64: ELIC with cysteamine in POPC nanodisc
Classification: STRUCTURAL PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-06-06
Authors: Petroff II, J.T., Deng, Z., Rau, M.J., Fitzpatrick, J.A.J., Yuan, P., Cheng, W.W.L.
PDB entry 8d65: ELIC apo in 2:1:1 POPC:POPE:POPG nanodisc
Classification: STRUCTURAL PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2022-06-06
Authors: Petroff II, J.T., Deng, Z., Rau, M.J., Fitzpatrick, J.A.J., Yuan, P., Cheng, W.W.L.
PDB entry 8d66: ELIC with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc
Classification: STRUCTURAL PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-06-06
Authors: Petroff II, J.T., Deng, Z., Rau, M.J., Fitzpatrick, J.A.J., Yuan, P., Cheng, W.W.L.
PDB entry 8d67: ELIC3 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc
Classification: STRUCTURAL PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-06-06
Authors: Petroff II, J.T., Deng, Z., Rau, M.J., Fitzpatrick, J.A.J., Yuan, P., Cheng, W.W.L.
PDB entry 8d69: Crystal structure of hen egg white lysozyme at 175 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d6a: Cryo-EM structure of human LIF signaling complex: model containing the interaction core region
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2022-06-06
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8d6b: Crystal structure of hen egg white lysozyme at 175 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d6c: Crystal Structure of Human Myt1 Kinase domain Bounded with compound 28
Classification: SIGNALING PROTEIN, Transferase/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-06
Authors: Pau, V.P.T., Mao, D.Y.L., Mader, P., Orlicky, S., Sicheri, F.
PDB entry 8d6d: Crystal Structure of Human Myt1 Kinase domain Bounded with compound 39
Classification: SIGNALING PROTEIN, Transferase/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-06-06
Authors: Pau, V.P.T., Mao, D.Y.L., Mader, P., Orlicky, S., Sicheri, F.
PDB entry 8d6e: Crystal Structure of Human Myt1 Kinase domain Bounded with RP-6306
Classification: SIGNALING PROTEIN, Transferase/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-06-06
Authors: Pau, V.P.T., Mao, D.Y.L., Mader, P., Orlicky, S., Sicheri, F.
PDB entry 8d6f: Crystal Structure of Human Myt1 Kinase domain Bounded with Eph receptor inhibitor / compound 41
Classification: SIGNALING PROTEIN, Transferase/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2022-06-06
Authors: Pau, V.P.T., Mao, D.Y.L., Mader, P., Orlicky, S., Sicheri, F.
PDB entry 8d6g: Nanorana parkeri saxiphilin
Classification: ANTITOXIN
Source organism: Nanorana parkeri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-06
Authors: Zakrzewska, S., Chen, Z., Minor, D.L.
PDB entry 8d6h: Q108K:K40L:T51C:T53A:R58L:Q38F:Q4F mutant of hCRBPII bound to synthetic fluorophore CM1V after UV irradiation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-06-06
Authors: Bingham, C.R., Geiger, J.H., Borhan, B.
PDB entry 8d6i: Crystal structure of hen egg white lysozyme at 175 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-06
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d6j: Human Ago2 bound to miR122(21nt) with PIWI loop swapped to AtAgo10 sequence
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-06-06
Authors: Xiao, Y., MacRae, I.
PDB entry 8d6k: Sco GlgEI-V279S in complex with cyclohexyl carbasugar
Classification: TRANSFERASE
Source organism: Streptomyces coelicolor A3(2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2022-06-06
Authors: Jayasinghe, T.J., Ronning, D.R.
PDB entry 8d6l: Q108K:K40L:T51C:T53A:R58L:Q38F:Q4F mutant of hCRBPII bound to synthetic fluorophore CM1V
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2022-06-06
Authors: Bingham, C.R., Geiger, J.H., Borhan, B.
PDB entry 8d6m: Nanorana parkeri saxiphilin:STX (co-crystal)
Classification: ANTITOXIN
Source organism: Nanorana parkeri
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-06
Authors: Zakrzewska, S., Chen, Z., Minor, D.L.
PDB entry 8d6n: Q108K:K40L:T53A:R58L:Q38F:Q4F mutant of hCRBPII bound to synthetic fluorophore CM1V
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2022-06-06
Authors: Bingham, C.R., Geiger, J.H., Borhan, B.
PDB entry 8d6o: Nanorana parkeri saxiphilin:F-STX (soaked)
Classification: ANTITOXIN
Source organism: Nanorana parkeri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-06
Authors: Zakrzewska, S., Chen, Z., Minor, D.L.
PDB entry 8d6p: Rana catesbeiana saxiphilin mutant - Y558A
Classification: ANTITOXIN
Source organism: Lithobates catesbeianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-06-06
Authors: Chen, Z., Zakrzewska, S., Minor, D.L.
PDB entry 8d6q: Rana catesbeiana saxiphilin mutant - Y558I
Classification: ANTITOXIN
Source organism: Lithobates catesbeianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-06-06
Authors: Chen, Z., Zakrzewska, S., Minor, D.L.
PDB entry 8d6s: Rana catesbeiana saxiphilin mutant - Y558A:STX (co-crystal)
Classification: ANTITOXIN
Source organism: Lithobates catesbeianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-06-06
Authors: Chen, Z., Zakrzewska, S., Minor, D.L.
PDB entry 8d6t: Rana catesbeiana saxiphilin mutant - Y558I:STX (co-crystal)
Classification: ANTITOXIN
Source organism: Lithobates catesbeianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-06-06
Authors: Chen, Z., Zakrzewska, S., Minor, D.L.
PDB entry 8d6u: Rana catesbeiana saxiphilin:F-STX (soaked)
Classification: ANTITOXIN
Source organism: Lithobates catesbeianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-06-06
Authors: Chen, Z., Zakrzewska, S., Minor, D.L.
PDB entry 8d6v: Structure of the Mycobacterium tuberculosis 20S proteasome bound to the C-terminal GQYL motif of the ATP-bound Mpa ATPase
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-06
Authors: Xiao, X., Li, H.
PDB entry 8d6w: Structure of the Mycobacterium tuberculosis 20S proteasome bound to the C-terminal GQYL motif of the ADP-bound Mpa ATPase
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-06-06
Authors: Xiao, X., Li, H.
PDB entry 8d6x: Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ATP-bound Mpa ATPase
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-06
Authors: Xiao, X., Li, H.
PDB entry 8d6y: Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ADP-bound Mpa ATPase
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2022-06-06
Authors: Xiao, X., Li, H.
PDB entry 8d6z: Crystal structure of SARS-CoV-2 spike stem fusion peptide in complex with neutralizing antibody COV91-27
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-06
Authors: Lee, C.C.D., Lin, T.H., Yuan, M., Wilson, I.A.
PDB entry 8d71: Human Ago2 bound to miR122(21nt)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-06-07
Authors: Xiao, Y., MacRae, I.
PDB entry 8d73: Crystal Structure of EGFR LRTM with compound 7
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-06-07
Authors: Kim, J.L.
PDB entry 8d74: Cryo-EM structure of human CNTF signaling complex: model containing the interaction core region
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2022-06-07
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8d75: Crystal structure of hen egg white lysozyme at 200 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d76: Crystal Structure of EGFR LRTM with compound 24
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-06-07
Authors: Kim, J.L.
PDB entry 8d77: Crystal structure of hen egg white lysozyme at 200 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d78: Crystal structure of a Ba stabilized four-tetrad, parallel Tetrahymena thermophila telomeric G-quadruplex in complex with N-methyl mesoporphyrin IX
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2022-06-07
Authors: Chen, E.V., Beseiso, D., Yatsunyk, L.A.
PDB entry 8d79: Crystal structure of a four-tetrad, parallel, and Na+ stabilized Tetrahymena thermophila telomeric G-quadruplex in complex with N-methyl mesoporphyrin IX
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-06-07
Authors: Chen, E.V., Beseiso, D., Yatsunyk, L.A.
PDB entry 8d7a: Crystal structure of hen egg white lysozyme at 200 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d7b: Crystal structure of hen egg white lysozyme at 225 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d7c: Crystal structure of hen egg white lysozyme at 225 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d7d: Crystal structure of hen egg white lysozyme at 225 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d7e: Cryo-EM structure of human CNTFR alpha in complex with the Fab fragments of two antibodies
Classification: CYTOKINE/Immune System
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2022-06-07
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8d7f: FlvF from Aspergillus flavus in complex with Bis-Tris
Classification: LYASE
Source organism: Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2022-06-07
Authors: Tararina, M.A., Christianson, D.W.
PDB entry 8d7h: Cryo-EM structure of human CLCF1 in complex with CRLF1 and CNTFR alpha
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-07
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8d7i: Bifunctional Inhibition of Neutrophil Elastase and Cathepsin G by Eap1 from S. aureus
Classification: HYDROLASE/INHIBITOR,PROTEIN BINDING
Source organism: Homo sapiens; Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.63 Å
Deposited: 2022-06-07
Authors: Gido, C.D., Herdendorf, T.J., Geisbrecht, B.V.
PDB entry 8d7j: Crystal structure of hen egg white lysozyme at 250 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d7k: Bifunctional Inhibition of Neutrophil Elastase and Cathepsin G by Eap2 from S. aureus
Classification: HYDROLASE/INHIBITOR,PROTEIN BINDING
Source organism: Homo sapiens; Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-06-07
Authors: Gido, C.D., Herdendorf, T.J., Geisbrecht, B.V.
PDB entry 8d7l: Crystal structure of hen egg white lysozyme at 250 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d7m: Human Casein kinase 1 delta in complex with phosphorylated human PERIOD2 FASP peptide
Classification: TRANSFERASE/CIRCADIAN CLOCK PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-06-07
Authors: Philpott, J.M., Freeberg, A.M., Tripathi, S.M., Partch, C.L.
PDB entry 8d7n: Human Casein kinase 1 delta in complex with phosphorylated human PERIOD2 FASP peptide
Classification: TRANSFERASE/CIRCADIAN CLOCK PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2022-06-07
Authors: Philpott, J.M., Freeberg, A.M., Tripathi, S.M., Partch, C.L.
PDB entry 8d7o: Human Casein kinase 1 delta in complex with phosphorylated human PERIOD2 FASP peptide
Classification: TRANSFERASE/CIRCADIAN CLOCK PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-06-07
Authors: Philpott, J.M., Freeberg, A.M., Tripathi, S.M., Partch, C.L.
PDB entry 8d7p: Human Casein kinase 1 delta in complex with phosphorylated Drosophila PERIOD peptide
Classification: TRANSFERASE/CIRCADIAN CLOCK PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-06-07
Authors: Philpott, J.M., Freeberg, A.M., Tripathi, S.M., Partch, C.L.
PDB entry 8d7q: Crystal structure of hen egg white lysozyme at 250 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d7r: Cryo-EM structure of human CLCF1 signaling complex: model containing the interaction core region
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-06-07
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8d7s: Crystal structure of hen egg white lysozyme at 275 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-07
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d7u: Cereblon~DDB1 bound to CC-92480 with DDB1 in the linear conformation
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-07
Authors: Watson, E.R., Lander, G.C.
PDB entry 8d7v: Cereblon~DDB1 bound to CC-92480 with DDB1 in the twisted conformation
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-07
Authors: Watson, E.R., Lander, G.C.
PDB entry 8d7w: Cereblon~DDB1 bound to CC-92480 with DDB1 in the hinged conformation
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-07
Authors: Watson, E.R., Lander, G.C.
PDB entry 8d7x: Cereblon~DDB1 in the Apo form with DDB1 in the hinged conformation
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-07
Authors: Watson, E.R., Lander, G.C.
PDB entry 8d7y: Cereblon-DDB1 in the Apo form with DDB1 in the twisted conformation
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-07
Authors: Watson, E.R., Lander, G.C.
PDB entry 8d7z: Cereblon-DDB1 bound to CC-92480 and Ikaros ZF1-2-3
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-07
Authors: Watson, E.R., Lander, G.C.
PDB entry 8d80: Cereblon~DDB1 bound to Iberdomide and Ikaros ZF1-2-3
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-06-07
Authors: Watson, E.R., Lander, G.C.
PDB entry 8d81: Cereblon~DDB1 bound to Pomalidomide
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-06-07
Authors: Watson, E.R., Lander, G.C.
PDB entry 8d82: Cryo-EM structure of human IL-6 signaling complex in detergent: model containing full extracellular domains
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2022-06-07
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8d84: E. faecium MurAA in complex with UDP-N-acetylmuramic acid (UNAM) and a covalent adduct of PEP with Cys119
Classification: TRANSFERASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-06-07
Authors: Zhou, Y., Shamoo, Y.
PDB entry 8d85: Cryo-EM structure of human IL-27 signaling complex: model containing the interaction core region
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2022-06-07
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8d86: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence co-crystallized with a guest small molecule, netropsin.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2022-06-07
Authors: Orun, A.R., Snow, C.D.
PDB entry 8d87: Fitted crystal structure of the homotrimer of fusion glycoprotein E1 from SFV into subtomogram averaged CHIKV E1 glycoprotein density
Classification: VIRAL PROTEIN
Source organism: Chikungunya virus strain S27-African prototype
Experimental method: ELECTRON MICROSCOPY
Resolution: 27.2 Å
Deposited: 2022-06-08
Authors: Mangala Prasad, V., Lee, K.K.
PDB entry 8d88: Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-lysine
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2022-06-08
Authors: Phillips, R.S., Nguyen Hoang, K.N.
PDB entry 8d89: Crystal structure of a novel GH5 enzyme retrieved from capybara gut metagenome
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-06-08
Authors: Martins, M.P., Morais, M.A.B., Murakami, M.T.
PDB entry 8d8a: Crystal structure of hen egg white lysozyme at 275 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-08
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d8b: Crystal structure of hen egg white lysozyme at 275 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-08
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d8c: Crystal structure of hen egg white lysozyme at 300 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-08
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d8d: Crystal structure of hen egg white lysozyme at 300 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-08
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d8e: Crystal structure of hen egg white lysozyme at 300 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-08
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d8f: Crystal structure of hen egg white lysozyme at 325 Kelvin
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-08
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d8g: Crystal structure of hen egg white lysozyme at 325 Kelvin (Duplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-08
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d8h: Crystal structure of hen egg white lysozyme at 325 Kelvin (Triplicate)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-08
Authors: Ribeiro, F.S., Lima, L.M.T.R.
PDB entry 8d8i: Crystal structure of Reverb alpha in complex with synthetic agonist
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.504 Å
Deposited: 2022-06-08
Authors: Ronin, C., Ciesielski, F., Hegazy, L., Burris, P.T.
PDB entry 8d8j: Yeast mitochondrial small subunit assembly intermediate (State 1)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-06-08
Authors: Burnside, C., Harper, N., Klinge, S.
PDB entry 8d8k: Yeast mitochondrial small subunit assembly intermediate (State 2)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-06-08
Authors: Burnside, C., Harper, N.J., Klinge, S.
PDB entry 8d8l: Yeast mitochondrial small subunit assembly intermediate (State 3)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-06-08
Authors: Burnside, C., Harper, N., Klinge, S.
PDB entry 8d8m: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence grown in a calcium chloride crystallization solution.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-06-08
Authors: Orun, A.R., Snow, C.D.
PDB entry 8d8n: gRAMP non-match PFS target RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-06-08
Authors: Hu, C., Nam, K.H., Schuler, G., Ke, A.
PDB entry 8d8o: Cryo-EM structure of substrate unbound PAPP-A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2022-06-08
Authors: Judge, R.A., Jain, R., Hao, Q., Ouch, C., Sridar, J., Smith, C.L., Wang, J.C.K., Eaton, D.
PDB entry 8d8p: Crystal structure of a novel fatty acid decarboxylase from Rothia nasimurium
Classification: OXIDOREDUCTASE
Source organism: Rothia nasimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2022-06-08
Authors: Vieira, P.S., Murakami, M.T., Zanphorlin, L.M.
PDB entry 8d8q: SARS-CoV-2 Spike RBD in complex with DMAbs 2130 and 2196
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2022-06-08
Authors: Du, J., Cui, J., Pallesen, J.
PDB entry 8d8r: SARS-CoV-2 Spike RBD in complex with DMAb 2196
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-06-08
Authors: Du, J., Cui, J., Pallesen, J.
PDB entry 8d8s: SufS from Staphylococcus aureus
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.388 Å
Deposited: 2022-06-08
Authors: Morrison, C.N., Boncella, A.E., Lunin, V.
PDB entry 8d8w: Crystal structure of ChoE with Ser38 adopting alternative conformations
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-06-09
Authors: Pham, V.D., Shi, R.
PDB entry 8d8x: Crystal structure of ChoE in complex with acetate and thiocholine (crystal form 2)
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2022-06-09
Authors: Pham, V.D., Shi, R.
PDB entry 8d8y: Crystal structure of ChoE N147A mutant in complex with acetylthiocholine
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-06-09
Authors: Pham, V.D., Shi, R.
PDB entry 8d8z: Crystal structure of ChoE N147A mutant in complex with thiocholine and chloride
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2022-06-09
Authors: Pham, V.D., Shi, R.
PDB entry 8d90: Crystal structure of ChoE N147A mutant in complex with bromide ions
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-06-09
Authors: Pham, V.D., Shi, R.
PDB entry 8d91: Crystal structure of ChoE in complex with acetate and tetraethylammonium (TEA)
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2022-06-09
Authors: Pham, V.D., Shi, R.
PDB entry 8d93: [2T7] Self-assembling tensegrity triangle with R3 symmetry at 2.96 A resolution, update and junction cut for entry 3GBI
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2022-06-09
Authors: Vecchioni, S., Woloszyn, K., Lu, B., Sha, R., Ohayon, Y.P., Seeman, N.C.
PDB entry 8d94: SAMHD1-DNA complex
Classification: HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2022-06-09
Authors: Hollis, T.J., Batalis, S.M.
PDB entry 8d95: Scaffold Hopping via Ring Opening Enables Identification of Acyclic Compounds as New Complement Factor D Inhibitors
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.166 Å
Deposited: 2022-06-09
Authors: Raman, K., Babu, Y.S.
PDB entry 8d96: Human DNA polymerase alpha/primase elongation complex I bound to primer/template
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2022-06-09
Authors: He, Q., Baranovskiy, A., Lim, C., Tahirov, T.
PDB entry 8d97: Apo gRAMP
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-06-09
Authors: Hu, C., Nam, K.H., Schuler, G., Ke, A.
PDB entry 8d98: Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with fluorinated inhibitor 5
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2022-06-09
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8d99: Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with fluorinated inhibitor 7
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-06-09
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8d9a: Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with fluorinated inhibitor 8
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-06-09
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8d9b: Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with fluorinated inhibitor 9
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-06-09
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8d9c: Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with fluorinated inhibitor 10
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-06-09
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8d9d: Human DNA polymerase-alpha/primase elongation complex II bound to primer/template
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2022-06-09
Authors: He, Q., Baranovskiy, A., Lim, C., Tahirov, T.
PDB entry 8d9e: gRAMP-match PFS target
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2022-06-09
Authors: Hu, C., Nam, K.H., Schuler, G., Ke, A.
PDB entry 8d9f: gRAMP-TPR-CHAT (Craspase)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2022-06-09
Authors: Hu, C., Nam, K.H., Schuler, G., Ke, A.
PDB entry 8d9g: gRAMP-TPR-CHAT Non match PFS target RNA(Craspase)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2022-06-09
Authors: Hu, C., Nam, K.H., Schuler, G., Ke, A.
PDB entry 8d9h: gRAMP-TPR-CHAT match PFS target RNA(Craspase)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-06-09
Authors: Hu, C., Nam, K.H., Schuler, G., Ke, A.
PDB entry 8d9i: gRAMP non-matching PFS-with Mg
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2022-06-09
Authors: Hu, C., Nam, K.H., Schuler, G., Ke, A.
PDB entry 8d9j: SAMHD1-DNA complex
Classification: HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2022-06-10
Authors: Hollis, T.J., Batalis, S.M.
PDB entry 8d9k: CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2022-06-10
Authors: Ruiz-Arroyo, V.M., Nam, Y.
PDB entry 8d9l: CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA and SAM
Classification: TRANSFERASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2022-06-10
Authors: Ruiz-Arroyo, V.M., Nam, Y.
PDB entry 8d9m: Cryo-EM of the OmcZ nanowires from Geobacter sulfurreducens
Classification: ELECTRON TRANSPORT, PROTEIN FIBRIL
Source organism: Geobacter sulfurreducens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2022-06-10
Authors: Wang, F., Chan, C.H., Mustafa, K., Hochbaum, A.I., Bond, D.R., Egelman, E.H.
PDB entry 8d9n: CryoEM structures of bAE1 captured in multiple states.
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2022-06-10
Authors: Zhekova, H.R., Wang, W.G., Jiang, J.S., Tsirulnikov, K., Muhammad-Khan, G.H., Azimov, R., Abuladze, N., Kao, L., Newman, D., Noskov, S.Y., Tieleman, P., Zhou, Z.H., Pushkin, A., Kurtz, I.
PDB entry 8d9o: De Novo Photosynthetic Reaction Center Protein in Apo-State
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-06-10
Authors: Ennist, N.M., Stayrook, S.E., Dutton, P.L., Moser, C.C.
PDB entry 8d9p: De Novo Photosynthetic Reaction Center Protein Equipped with Heme B and Mn(II) cations
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-06-10
Authors: Ennist, N.M., Stayrook, S.E., Dutton, P.L., Moser, C.C.
PDB entry 8d9r: AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide membrane tubes, centered on gamma-Arf1
Classification: VIRAL PROTEIN/PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2022-06-11
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d9s: AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide membrane tubes, centered on beta-Arf1
Classification: VIRAL PROTEIN/PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2022-06-11
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d9t: AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on gamma-Arf1
Classification: VIRAL PROTEIN/PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2022-06-11
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d9u: AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on beta-Arf1
Classification: VIRAL PROTEIN/PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2022-06-11
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d9v: gamma-Arf1 homodimeric interface within AP-1, Arf1, Nef lattice on narrow membrane tubes
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å
Deposited: 2022-06-11
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d9w: beta-Arf1 homodimeric interface within AP-1, Arf1, Nef, MHC-I lattice on narrow tubes
Classification: Protein Transport/Viral Protein
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.3 Å
Deposited: 2022-06-11
Authors: Hooy, R.H., Hurley, J.H.
PDB entry 8d9x: Cryo-EM structure of human DELE1 in oligomeric form
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-06-11
Authors: Yang, J., Lander, G.C.
PDB entry 8d9y: Crystal structure of Taipan alpha-neurotoxin in complex with Centi-LNX-D09 antibody
Classification: IMMUNE SYSTEM,ANTITOXIN/TOXIN
Source organism: Homo sapiens; Oxyuranus scutellatus scutellatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-12
Authors: Pletnev, S., Verardi, R., Tully, E.S., Glanville, J., Kwong, P.D.
PDB entry 8d9z: Crystal structure of Cobra alpha-neurotoxin in complex with Centi-LNX-D09 antibody
Classification: IMMUNE SYSTEM,ANTITOXIN/TOXIN
Source organism: Homo sapiens; Naja nivea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-06-12
Authors: Pletnev, S., Verardi, R., Tully, E.S., Glanville, J., Kwong, P.D.
PDB entry 8da0: Crystal structure of Mamba alpha-neurotoxin in complex with Centi-LNX-D09 antibody
Classification: IMMUNE SYSTEM,ANTITOXIN/TOXIN
Source organism: Dendroaspis polylepis polylepis; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-12
Authors: Pletnev, S., Verardi, R., Tully, E.S., Glanville, J., Kwong, P.D.
PDB entry 8da1: Crystal structure of Krait alpha-neurotoxin in complex with Centi-LNX-D09 antibody
Classification: IMMUNE SYSTEM, ANTITOXIN/TOXIN
Source organism: Bungarus multicinctus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2022-06-12
Authors: Pletnev, S., Verardi, R., Tully, E.S., Glanville, J., Kwong, P.D.
PDB entry 8da2: Acinetobacter baumannii L,D-transpeptidase
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-06-12
Authors: Toth, M., Stewart, N.K., Smith, C.A., Vakulenko, S.B.