LiteFold/PDB huggingface dataset:
PDB entry 8izc: Human CK1 Delta Kinase structure bound to Inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-04-06
Authors: Ghosh, K.
PDB entry 8izd: Cryo-EM structure of the C26-CoA-bound Lac1-Lip1 complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2023-04-07
Authors: Xie, T., Fang, Q., Gong, X.
PDB entry 8ize: Crystal structure of intracellular B30.2 domain of BTN3A1 in complex with 4-HMBPP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-04-07
Authors: Yang, Y.Y., Yi, S.M., Huang, J.W., Chen, C.C., Guo, R.T.
PDB entry 8izf: Cryo-EM structure of the Lac1-Lip1 (Lip1-S74F) complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2023-04-07
Authors: Xie, T., Fang, Q., Gong, X.
PDB entry 8izg: Crystal structure of intracellular B30.2 domain of BTN3A1 in complex with 5-HMBPP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-07
Authors: Yang, Y.Y., Yi, S.M., Huang, J.W., Chen, C.C., Guo, R.T.
PDB entry 8izh: Crystal structure of trypsin-aminoguanidine complex at 2.30 Angstroms resolution
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-07
Authors: Ahmad, M.S., Kalam, N., Akbar, Z., Rasheed, S., Choudhary, M.I.
PDB entry 8izi: Crystal structure of trypsin-cimetidine complex at 2.10 Angstroms resolution
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-04-07
Authors: Ahmad, M.S., Kalam, N., Akbar, Z., Rasheed, S., Choudhary, M.I.
PDB entry 8izj: Crystal structure of Escherichia coli Adenine Phosphoribosyltransferase (APRT) in complex with AMP
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-07
Authors: Yadav, P., Kushwaha, G.S., Bhavesh, N.S.
PDB entry 8izk: Crystal structure of trypsin-guanidine complex at 2.05 Angstroms resolution
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-04-07
Authors: Ahmad, M.S., Kalam, N., Akbar, Z., Rasheed, S., Choudhary, M.I.
PDB entry 8izl: Structure of the Mumps Virus L Protein Bound by Phosphoprotein Tetramer
Classification: VIRAL PROTEIN
Source organism: Mumps orthorubulavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-04-07
Authors: Li, T.H., Shen, Q.T.
PDB entry 8izm: Structure of the Mumps Virus L Protein (state2) Bound by Phosphoprotein Tetramer
Classification: VIRAL PROTEIN
Source organism: Mumps virus strain Jeryl Lynn
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-04-07
Authors: Li, T.H., Shen, Q.T.
PDB entry 8izn: Structural study of Interferon-induced, double-stranded RNA-activated protein kinase (PKR) and Non-structural protein 1 (NS1) complex
Classification: TRANSFERASE/VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus (strain A/Memphis/102/1972 H3N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.67 Å
Deposited: 2023-04-07
Authors: Han, C.W., Kim, H.J.
PDB entry 8izp: Multidrug resistance-associated protein 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-04-07
Authors: Yun, C.H., Gao, H.M.
PDB entry 8izq: Multidrug resistance-associated protein 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-04-07
Authors: Yun, C.H., Gao, H.M.
PDB entry 8izr: Multidrug resistance-associated protein 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-04-07
Authors: Yun, C.H., Gao, H.M.
PDB entry 8izs: Structure of a triple-helix region of human collagen type XVII
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-04-07
Authors: Zhu, Y., Yang, X., Sun, F.
PDB entry 8izt: Crystal structure of the N-terminal domain (residues 1-121) of MPXV A7
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-04-08
Authors: Ni, X.C., Lei, J.
PDB entry 8izu: Crystal structure of the N-terminal domain (residues 1-137) of MPXV A7
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-04-08
Authors: Ni, X.C., Lei, J.
PDB entry 8izy: Human KCNQ2-CaM in complex with HN37
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-04-09
Authors: Ma, D., Li, X., Guo, J.
PDB entry 8izz: Cryo-EM structure of DIP-2I8I polymorph 2
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-04-09
Authors: Li, D.N., Ma, Y.Y., Li, D., Dai, B., Liu, C.
PDB entry 8j00: Human KCNQ2-CaM in complex with CBD
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-04-09
Authors: Ma, D., Li, X., Guo, J.
PDB entry 8j01: Human KCNQ2-CaM in complex with CBD and PIP2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-04-09
Authors: Ma, D., Li, X., Guo, J.
PDB entry 8j02: Human KCNQ2(F104A)-CaM-PIP2-CBD complex in state II
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-04-09
Authors: Ma, D., Li, X., Guo, J.
PDB entry 8j03: Human KCNQ2(F104A)-CaM-PIP2-CBD complex in state I
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-04-09
Authors: Ma, D., Li, D., Guo, J.
PDB entry 8j04: Human KCNQ2-CaM-HN37 complex in the presence of PIP2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-04-09
Authors: Ma, D., Li, X., Guo, J.
PDB entry 8j05: Human KCNQ2-CaM complex in the presence of PIP2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-04-09
Authors: Ma, D., Li, X., Guo, J.
PDB entry 8j07: 96nm repeat of human respiratory doublet microtubule and associated axonemal complexes
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-04-09
Authors: Gui, M., Brown, A.
PDB entry 8j09: Crystal structure of the Sld3 Cdc45-binding-domain, in complex with Cdc45
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-04-10
Authors: Li, H., Ishizaka, I., Kato, K., Sun, X., Muramatsu, S., Itou, H., Ose, T., Araki, H., Yao, M.
PDB entry 8j0a: Robust design of effective allosteric activator UbV R4 for Rsp5 E3 ligase using the machine-learning tool ProteinMPNN
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-04-10
Authors: Lin, Y.-F., Hsieh, Y.-J., Kao, H.-W., Ko, T.-P., Wu, K.-P.
PDB entry 8j0d: FCP heterodimer, Lhca2, and Lhcf5 together as the M1 side binds to the PSII core in the diatom Thalassiosira pseudonana
Classification: PHOTOSYNTHESIS
Source organism: Thalassiosira pseudonana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-04-10
Authors: Li, Z., Feng, Y., Wang, W., Shen, J.R.
PDB entry 8j0e: GK monomer complexes with catalytic intermediate
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-10
Authors: Zhang, T., Guo, C.J., Liu, J.L.
PDB entry 8j0f: GK tetramer with adjacent hooks at reaction state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-10
Authors: Zhang, T., Guo, C.J., Liu, J.L.
PDB entry 8j0g: GK monomer complexes with glutamate and ATP
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-04-10
Authors: Zhang, T., Guo, C.J., Liu, J.L.
PDB entry 8j0h: Crystal structure of the fission yeast Rex1BD protein(C4H3.06)
Classification: NUCLEAR PROTEIN
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.383 Å
Deposited: 2023-04-11
Authors: Li, J., Sun, W., Chen, Y.
PDB entry 8j0i: Aldo-keto reductase KmAKR
Classification: OXIDOREDUCTASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-04-11
Authors: Xu, S.Y., Zhou, L., Xu, Y., Wang, Y.J., Zheng, Y.G.
PDB entry 8j0j: AtSLAC1 8D mutant in closed state
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-04-11
Authors: Lee, Y., Lee, S.
PDB entry 8j0k: Crystal structure of human TFAP2A in complex with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-04-11
Authors: Liu, K., Xiao, Y.Q., Li, W.F., Min, J.R.
PDB entry 8j0l: Structure of DNA binding Domain of Human TFAP2A
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-04-11
Authors: Liu, K., Xiao, Y.Q., Gan, L.Y., Min, J.R.
PDB entry 8j0n: cryo-EM structure of human EMC
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-04-11
Authors: Li, M., Zhang, C., Wu, J., Lei, M.
PDB entry 8j0o: cryo-EM structure of human EMC and VDAC
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-04-11
Authors: Li, M., Zhang, C., Wu, J., Lei, M.
PDB entry 8j0p: Chitin binding SusD-like protein AqSusD from a marine Bacteroidetes
Classification: SUGAR BINDING PROTEIN
Source organism: Aquimarina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-04-11
Authors: Yang, J.
PDB entry 8j0q: Structure of DNA binding domain of human TFAP2B
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-04-11
Authors: Liu, K., Xiao, Y.Q., Li, W.F., Min, J.R.
PDB entry 8j0r: Structure of human TFAP2A in complex with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-04-11
Authors: Liu, K., Xiao, Y.Q., Li, W.F., Min, J.R.
PDB entry 8j0s: Cryo-EM structure of Mycobacterium tuberculosis ATP synthase in complex with bedaquiline(BDQ)
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2023-04-11
Authors: Zhang, Y., Lai, Y., Liu, F., Rao, Z., Gong, H.
PDB entry 8j0t: Cryo-EM structure of Mycobacterium tuberculosis ATP synthase in the apo-form
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-04-11
Authors: Zhang, Y., Lai, Y., Liu, F., Rao, Z., Gong, H.
PDB entry 8j0u: Crystal structure of horse spleen L-ferritin A115T mutant at -180deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j0v: Crystal structure of horse spleen L-ferritin at -100deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j0w: Crystal structure of horse spleen L-ferritin at -40deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j0x: Crystal structure of horse spleen L-ferritin at -20deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j0y: Crystal structure of horse spleen L-ferritin at 20deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j0z: Crystal structure of horse spleen L-ferritin at -180deg Celsius cooled from -40deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j10: Crystal structure of horse spleen L-ferritin at -180deg Celsius cooled from -20deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j11: Crystal structure of horse spleen L-ferritin at 0deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j12: Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Acidibacillus sulfooxidans; Acidibacillus sulfuroxidans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-04-12
Authors: Hino, T., Omura, N.S., Nakagawa, R., Togashi, T., Takeda, N.S., Hiramoto, T., Tasaka, S., Hirano, H., Tokuyama, T., Uosaki, H., Ishiguro, H., Yamano, H., Ozaki, Y., Motooka, D., Mori, H., Kirita, Y., Kise, Y., Itoh, Y., Matoba, S., Aburatani, H., Yachie, N., Siksnys, V., Ohmori, T., Hoshino, A., Nureki, O.
PDB entry 8j16: Crystal structure of horse spleen L-ferritin at -80deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8j17: Crystal structure of IsPETase variant
Classification: HYDROLASE
Source organism: Ideonella sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-04-12
Authors: Yin, Q.D., Wang, Y.X.
PDB entry 8j18: Cryo-EM structure of the 3-OH-C12-bound GPR84 receptor-Gi complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-04-12
Authors: Liu, H., Yin, W., Xu, H.E.
PDB entry 8j19: Cryo-EM structure of the LY237-bound GPR84 receptor-Gi complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-04-12
Authors: Liu, H., Yin, W., Xu, H.E.
PDB entry 8j1a: Cryo-EM structure of the GPR84 receptor-Gi complex with no ligand modeled
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2023-04-12
Authors: Liu, H., Yin, W., Xu, H.E.
PDB entry 8j1b: GSK101 and Ruthenium Red bound state of mTRPV4
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2023-04-12
Authors: Zhen, W.X., Yang, F.
PDB entry 8j1c: Structure of amino acid dehydrogenase in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas veronii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-04-12
Authors: Sakuraba, H., Ohshima, T.
PDB entry 8j1d: Cryo-EM structure of apo state mTRPV4
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2023-04-12
Authors: Zhen, W.X., Yang, F.
PDB entry 8j1e: AtSLAC1 in open state
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2023-04-12
Authors: Lee, Y., Lee, S.
PDB entry 8j1f: GSK101 bound state of mTRPV4
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-04-12
Authors: Zhen, W.X., Yang, F.
PDB entry 8j1g: Structure of amino acid dehydrogenase in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas veronii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-04-12
Authors: Sakuraba, H., Ohshima, T.
PDB entry 8j1h: Agonist1 and Ruthenium Red bound state of mTRPV4
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-04-12
Authors: Zhen, W.X., Yang, F.
PDB entry 8j1i: Crystal Structure of EphA8/SASH1 Complex
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-04-12
Authors: Liu, W., Li, J., Ding, Y.
PDB entry 8j1j: Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Sulfoacidibacillus thermotolerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-04-13
Authors: Hino, T., Omura, N.S., Nakagawa, R., Togashi, T., Takeda, N.S., Hiramoto, T., Tasaka, S., Hirano, H., Tokuyama, T., Uosaki, H., Ishiguro, H., Yamano, H., Ozaki, Y., Motooka, D., Mori, H., Kirita, Y., Kise, Y., Itoh, Y., Matoba, S., Aburatani, H., Yachie, N., Siksnys, V., Ohmori, T., Hoshino, A., Nureki, O.
PDB entry 8j1k: co-crystal structure of non-carboxylic acid inhibitor with PHD2
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.451 Å
Deposited: 2023-04-13
Authors: Xu, J., Fu, Y., Ding, X., Meng, Q., Wang, L., Zhang, M., Ding, X., Ren, F., Zhavoronkov, A.
PDB entry 8j1m: Crystal structure of a crosslinked variant of BbZIP
Classification: MEMBRANE PROTEIN
Source organism: Bordetella bronchiseptica RB50
Experimental method: X-RAY DIFFRACTION
Resolution: 1.952 Å
Deposited: 2023-04-13
Authors: Zhang, T., Zhang, Y., Sui, D., Hu, J.
PDB entry 8j1n: Structure of human UCP1 in the DNP-bound state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2023-04-13
Authors: Chen, L., Kang, Y.
PDB entry 8j1o: Crystal structure of HaloTag complexed with BTTA
Classification: HYDROLASE
Source organism: Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.991 Å
Deposited: 2023-04-13
Authors: Kim, H., Rhee, H., Lee, C.
PDB entry 8j1p: Cryo-EM structure of Ufd4 in complex with K29/48 triUb
Classification: LYASE
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-04-13
Authors: Ai, H.S., Mao, J.X., Wu, X.W., Pan, M., Liu, L.
PDB entry 8j1q: CryoEM structure of SARS CoV-2 RBD and Aptamer complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM/DNA
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-13
Authors: Rahman, M.S., Jang, S.K., Lee, J.O.
PDB entry 8j1r: cryo-EM structures of Ufd4 in complex with Ubc4-Ub
Classification: LIGASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-04-13
Authors: Ai, H.S., Mao, J.X., Wu, X.W., Cai, H.Y., Pan, M., Liu, L.
PDB entry 8j1t: Local refined cryo-EM structure of Omicron BA.5 RBD in complex with 8-9D Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-13
Authors: Xiang, Y., Li, R.
PDB entry 8j1v: Cryo-EM structure of SARS-CoV2 Omicron BA.5 spike in complex with 8-9D Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-04-13
Authors: Xiang, Y., Li, R.
PDB entry 8j1w: A near-infrared fluorescent protein of de novo backbone design
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-04-13
Authors: Hu, X., Xu, Y.
PDB entry 8j1x: A near-infrared fluorescent protein of de novo backbone design
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-04-13
Authors: Hu, X., Xu, Y.
PDB entry 8j1z: The global structure of pre50S related to DbpA in state3
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-04-13
Authors: Yu, T., Zeng, F.
PDB entry 8j20: Cryo-EM structure of FFAR3 bound with valeric acid and AR420626
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-14
Authors: Tai, L., Li, F., Sun, X., Tang, W., Wang, J.
PDB entry 8j21: Cryo-EM structure of FFAR3 complex bound with butyrate acid
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-14
Authors: Tai, L., Li, F., Sun, X., Tang, W., Wang, J.
PDB entry 8j22: Cryo-EM structure of FFAR2 complex bound with TUG-1375
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-14
Authors: Tai, L., Li, F., Sun, X., Tang, W., Wang, J.
PDB entry 8j23: Cryo-EM structure of FFAR2 complex in apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-14
Authors: Tai, L., Li, F., Sun, X., Tang, W., Wang, J.
PDB entry 8j24: Cryo-EM structure of FFAR2 complex bound with acetic acid
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-04-14
Authors: Tai, L., Li, F., Tang, W., Sun, X., Wang, J.
PDB entry 8j25: Crystal structure of PML B-box2 mutant
Classification: LIGASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-04-14
Authors: Zhou, C., Zang, N., Zhang, J.
PDB entry 8j26: CryoEM structure of SARS CoV-2 RBD and Aptamer complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM/DNA
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-14
Authors: Rahman, M.S., Jang, S.K., Lee, J.O.
PDB entry 8j27: GK monomer complexes with ADP
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-04-14
Authors: Zhang, T., Guo, C.J., Liu, J.L.
PDB entry 8j28: GK monomer complexes with G5P and ADP
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-04-14
Authors: Zhang, T., Guo, C.J., Liu, J.L.
PDB entry 8j29: Structures of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus
Classification: OXIDOREDUCTASE
Source organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-04-14
Authors: Ma, Q., Liu, C.
PDB entry 8j2a: Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, in complex with NADP+
Classification: OXIDOREDUCTASE
Source organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-14
Authors: Ma, Q., Liu, C.
PDB entry 8j2b: Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, in complex with NADP+ and malonate
Classification: OXIDOREDUCTASE
Source organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2023-04-14
Authors: Ma, Q., Liu, C.
PDB entry 8j2c: Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, mutant N940V/K1106W/S1114R
Classification: OXIDOREDUCTASE
Source organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-14
Authors: Ma, Q., Liu, C.
PDB entry 8j2d: Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, mutant N940V/K1106W/S1114R in complex with NADP+
Classification: OXIDOREDUCTASE
Source organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-04-14
Authors: Ma, Q., Liu, C.
PDB entry 8j2e: Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, mutant N940V/K1106W/S1114R in complex with NADP+ and malonate
Classification: OXIDOREDUCTASE
Source organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-04-14
Authors: Ma, Q., Liu, C.
PDB entry 8j2f: Human neutral shpingomyelinase
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-04-14
Authors: Zhang, S.S.
PDB entry 8j2g: Human ZnT1-D47N/D255N mutant
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-14
Authors: Sun, L., Liu, X., Sun, C., He, B.
PDB entry 8j2h: Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (N137A) in jellyfish Cytaeis uchidae from Biortus
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-14
Authors: Wu, J., Wang, F., Gui, W., Cheng, W., Yang, Y.
PDB entry 8j2i: Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (Q140S) in jellyfish Cytaeis uchidae from Biortus
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-04-14
Authors: Wu, J., Wang, F., Gui, W., Cheng, W., Yang, Y.
PDB entry 8j2j: Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (Y187F) in jellyfish Cytaeis uchidae from Biortus
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-04-14
Authors: Wu, J., Wang, F., Gui, W., Cheng, W., Yang, Y.
PDB entry 8j2k: Crystal structure of a bright green fluorescent protein (StayGold) with double mutation (N137A, Q140S) in jellyfish Cytaeis uchidae from Biortus
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-14
Authors: Wu, J., Wang, F., Gui, W., Cheng, W., Yang, Y.
PDB entry 8j2l: Crystal structure of a bright green fluorescent protein (StayGold) with double mutations (N137A, Y187F) in jellyfish Cytaeis uchidae from Biortus
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-14
Authors: Wu, J., Wang, F., Gui, W., Cheng, W., Yang, Y.
PDB entry 8j2m: The truncated rice Na+/H+ antiporter SOS1 (1-976) in a constitutively active state
Classification: MEMBRANE PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-14
Authors: Zhang, X.Y., Tang, L.H., Zhang, C.R., Nie, J.W., Chen, Y.H.
PDB entry 8j2n: Exopolysaccharide phosphotransferase CpsY in Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-04-14
Authors: Liu, D.F.
PDB entry 8j2o: Crystal Structure of Human Carbonic Anhydrase II In-complex with Acetohexamide at 2.6 A Resolution
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-04-14
Authors: Rasheed, S., Huda, N., Choudhary, M.I.
PDB entry 8j2p: Crystal structure of PML B-box2
Classification: LIGASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-04-15
Authors: Zhou, C., Zang, N., Zhang, J.
PDB entry 8j2q: Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-04-15
Authors: Kojima, M., Ueno, T., Abe, S., Hirata, K.
PDB entry 8j2u: Glucosyl Transferase NbUGT72AY1 co-crystallized with UDP
Classification: TRANSFERASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2023-04-15
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8j2v: Glucosyl transferase NbUGT72AY1 co-crystallized with Scopoletin
Classification: TRANSFERASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-04-15
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8j2w: Saccharothrix syringae photocobilins protein, dark state
Classification: UNKNOWN FUNCTION
Source organism: Saccharothrix syringae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-15
Authors: Zhang, S., Poddar, H., Levy, W.C., Leys, D.
PDB entry 8j2x: Saccharothrix syringae photocobilins protein, light state
Classification: UNKNOWN FUNCTION
Source organism: Saccharothrix syringae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-04-15
Authors: Zhang, S., Poddar, H., Levy, C., Leys, D.
PDB entry 8j2y: Acidimicrobiaceae bacterium photocobilins protein, dark state
Classification: UNKNOWN FUNCTION
Source organism: Acidimicrobiaceae bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-15
Authors: Zhang, S., Poddar, H., Levy, W.C., Leys, D.
PDB entry 8j2z: Glucosyl transferase
Classification: TRANSFERASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.783 Å
Deposited: 2023-04-15
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8j30: Crystal structure of ApNGT with Q469A and M218A mutations in complex with UDP-GLC
Classification: TRANSFERASE
Source organism: Actinobacillus pleuropneumoniae serovar 5b str. L20
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-04-15
Authors: Feng, Y., Hao, Z., Guo, Q., Zheng, J., Da, L., Peng, W.
PDB entry 8j31: Glucosyl transferase crystallized in the presence of beta carotene
Classification: TRANSFERASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.78 Å
Deposited: 2023-04-16
Authors: Arold, S.T., Hameed, U.F.S.
PDB entry 8j32: Crystal structure of SARS-Cov-2 main protease in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j34: Crystal structure of MERS main protease in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j35: Crystal structure of SARS-Cov-2 main protease G15S mutant in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j36: Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j37: Crystal structure of SARS-Cov-2 main protease K90R mutant in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j38: Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j39: Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j3a: Crystal structure of SARS-Cov-2 main protease Y54C mutant in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j3b: Crystal structure of SARS-Cov-2 main protease S46F mutant in complex with PF00835231
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-04-16
Authors: Zhou, X.L., Lin, C., Zou, X.F., Zhang, J., Li, J.
PDB entry 8j3c: Crystal structure of AtHPPD-Y19623 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.703 Å
Deposited: 2023-04-16
Authors: Dong, J., Yang, G.-F., Lin, H.-Y.
PDB entry 8j3g: Crystal structure of apo (S)-norcoclaurine 6-O-methyltransferase from Coptis chinensis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Coptis chinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-16
Authors: Li, X.H., Su, D., Zhang, C.H.
PDB entry 8j3i: Crystal structure of (S)-scoulerine 9-O-methyltransferase from Coptis chinensis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Coptis chinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-04-16
Authors: Li, X.H., Su, D., Lei, J.H.
PDB entry 8j3j: Crystal structure of a bright green fluorescent protein (StayGold) with double mutations (Q140S, Y187F) in jellyfish Cytaeis uchidae from Biortus
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-04-17
Authors: Wu, J., Wang, F., Gui, W., Cheng, W., Yang, Y.
PDB entry 8j3m: Structure of GH1 Br2 beta-glucosidase from bovine rumen metagenome
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2023-04-17
Authors: Kaenying, W., Kongsaeree, P.T., Tagami, T.
PDB entry 8j3n: Solution NMR structure of purS subunit of phosphoribosylformylglycinamidine synthase enzyme from Staphylococcus aureus
Classification: LYASE
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: SOLUTION NMR
Deposited: 2023-04-17
Authors: Wahab, A., Ashraf, F., Choudhary, M.I.
PDB entry 8j3o: Formate dehydrogenase wild-type enzyme from Candida dubliniensis complexed with NADH
Classification: OXIDOREDUCTASE
Source organism: Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-04-17
Authors: Ma, W., Zheng, Y.C., Geng, Q., Chen, C.
PDB entry 8j3p: Formate dehydrogenase mutant from from Candida dubliniensis M4 complexed with NADP+
Classification: OXIDOREDUCTASE
Source organism: Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-17
Authors: Ma, W., Zheng, Y.C., Geng, Q., Chen, C., Xu, J.H.
PDB entry 8j3q: Solution structure of LL-TILmut1
Classification: HYDROLASE
Source organism: Lepidobatrachus laevis
Experimental method: SOLUTION NMR
Deposited: 2023-04-18
Authors: Rami, M.J., Sarma, S.P.
PDB entry 8j3r: Cryo-EM structure of the AsCas12f-HKRA-sgRNAS3-5v7-target DNA
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Sulfoacidibacillus thermotolerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-04-18
Authors: Hino, T., Omura, N.S., Nakagawa, R., Togashi, T., Takeda, N.S., Hiramoto, T., Tasaka, S., Hirano, H., Tokuyama, T., Uosaki, H., Ishiguro, H., Yamano, H., Ozaki, Y., Motooka, D., Mori, H., Kirita, Y., Kise, Y., Itoh, Y., Matoba, S., Aburatani, H., Yachie, N., Siksnys, V., Ohmori, T., Hoshino, A., Nureki, O.
PDB entry 8j3s: Complex structure of human cytomegalovirus protease and a macrocyclic peptide ligand
Classification: HYDROLASE
Source organism: Human betaherpesvirus 5; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2023-04-18
Authors: Yoshida, S., Sako, Y., Nikaido, E., Ueda, T., Kozono, I., Ichihashi, Y., Nakahashi, A., Onishi, M., Yamatsu, Y., Kato, T., Nishikawa, J., Tachibana, Y.
PDB entry 8j3t: Complex structure of human cytomegalovirus protease and a non-covalent small-molecule ligand
Classification: HYDROLASE
Source organism: Human betaherpesvirus 5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-04-18
Authors: Yoshida, S., Sako, Y., Nikaido, E., Ueda, T., Kozono, I., Ichihashi, Y., Nakahashi, A., Onishi, M., Yamatsu, Y., Kato, T., Nishikawa, J., Tachibana, Y.
PDB entry 8j3v: Structure of the transmembrane domain of human PD-L2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-04-18
Authors: OuYang, B., Zhang, Y.
PDB entry 8j3w: Cryo-EM structure of aspirin-bound ABCC4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-04-18
Authors: Chen, Y., Wang, L., Hou, W.T., Zhou, C.Z., Chen, Y., Li, Q.
PDB entry 8j3x: Crystal structure of CBM6E from Saccharophagus degradans
Classification: HYDROLASE
Source organism: Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-04-18
Authors: He, C., Li, F.
PDB entry 8j3y: Crystal structure of CBM6E E168Q in complex with oligosaccharides
Classification: HYDROLASE
Source organism: Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-04-18
Authors: He, C., Li, F.
PDB entry 8j3z: Cryo-EM structure of ATP-U46619-bound ABCC4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-04-18
Authors: Chen, Y., Wang, L., Hou, W.T., Zhou, C.Z., Chen, Y., Li, Q.
PDB entry 8j40: Crystal Structure of CATB8 in complex with chloramphenicol
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-04-18
Authors: Liao, J., Kuang, L., Jiang, Y.
PDB entry 8j43: Reductive aminase RA29-WT
Classification: OXIDOREDUCTASE
Source organism: Frankia sp. QA3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-04-19
Authors: Zheng, X.Y., Xu, G.C., Ni, Y.
PDB entry 8j44: Reductive Aminase RA34-WT
Classification: OXIDOREDUCTASE
Source organism: Streptomyces viridochromogenes (strain DSM 40736 / JCM 4977 / BCRC 1201 / Tue 494)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-04-19
Authors: Zheng, X.Y., Xu, G.C., Ni, Y.
PDB entry 8j45: Crystal structure of a Pichia pastoris-expressed IsPETase variant
Classification: HYDROLASE
Source organism: Ideonella sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-04-19
Authors: Li, X., He, H.L., Long, X., Niu, D., Huang, J.-W., Chen, C.-C., Guo, R.-T.
PDB entry 8j46: Human Consensus Olfactory Receptor OR52c in apo state, OR52c-bRIL
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2023-04-19
Authors: Choi, C.W., Bae, J., Choi, H.-J., Kim, J.
PDB entry 8j47: CryoEM Structure of 40-Residue Arctic (E22G) Beta-Amyloid Fibril Derived by Co-Analysis with Solid-State NMR | E22G Abeta40
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-04-19
Authors: Tehrani, M.J., Matsuda, I., Yamagata, A., Matsunaga, T., Sato, M., Toyooka, K., Shirouzu, M., Ishii, Y., Kodama, Y., McElheny, D., Kobayashi, N.
PDB entry 8j48: Crystal structure of OY phytoplasma SAP05 in complex with AtGATA18
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana; Onion yellows phytoplasma OY-M
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-04-19
Authors: Dong, C., Yan, X., Yuan, X.
PDB entry 8j49: Crystal structure of OY phytoplasma SAP05 in complex with AtSPL5
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana; Onion yellows phytoplasma OY-M
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-04-19
Authors: Dong, C., Yan, X., Yuan, X.
PDB entry 8j4a: Crystal structure of OY phytoplasma SAP05 in complex with AtRPN10
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana; Onion yellows phytoplasma OY-M
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-04-19
Authors: Dong, C., Yan, X., Yuan, X.
PDB entry 8j4b: Crystal structure of OY phytoplasma SAP05 in complex with AtSPL13
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana; Onion yellows phytoplasma OY-M
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-04-19
Authors: Dong, C., Yan, X., Yuan, X.
PDB entry 8j4c: YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium pollutisoli; Spirochaeta thermophila DSM 6578
Experimental method: X-RAY DIFFRACTION
Resolution: 3.34 Å
Deposited: 2023-04-19
Authors: Ikei, M., Miyazaki, R., Monden, K., Naito, Y., Takeuchi, A., Takahashi, Y.S., Tanaka, Y., Ichikawa, M., Tsukazaki, T.
PDB entry 8j4f: Structure of human Nav1.7 in complex with Hardwickii acid
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-04-19
Authors: Wu, Q.R., Yan, N.
PDB entry 8j4g: Crystal structure of 11JD mutant-I62N
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos; unidentified influenza virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-04-19
Authors: Tang, Z., Zhang, N.
PDB entry 8j4h: X-ray structure of a ferric ion-binding protein A (FbpA) from Vibrio metschnikovii in complex with Danshensu (DSS)
Classification: METAL BINDING PROTEIN
Source organism: Vibrio metschnikovii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-04-20
Authors: Lu, P., Jiang, J., Nagata, K.
PDB entry 8j4i: Unveiling the Role of Human Prohibitin 2 as a Mitochondrial Calcium Channel in Parkinson's Disease
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-04-20
Authors: Li, Y.Y., Fang, Y., Gao, Y.X., Ding, W., Yang, J., Liu, Y., Shen, B., Wang, J.F., Zhou, S.
PDB entry 8j4j: X-ray structure of a ferric ion-binding protein A (FbpA) from Vibrio metschnikovii in complex with ferric ion
Classification: METAL BINDING PROTEIN
Source organism: Vibrio metschnikovii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-04-20
Authors: Lu, P., Jiang, J., Nagata, K.
PDB entry 8j4k: X-ray crystal structure of F46C myoglobin with a covalently linked phenol group
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-04-20
Authors: Yuan, H., Lin, Y.W.
PDB entry 8j4l: X-ray crystal structure of F46C myoglobin with a covalently linked triazole group
Classification: OXYGEN STORAGE
Source organism: Physeter macrocephalus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-04-20
Authors: Yuan, H., Lin, Y.W.
PDB entry 8j4n: Crystal Structure of the Acinetobacter baumannii LysR family regulator AceR effector-binding domain (APO FORM)
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-04-20
Authors: Ma, J.M., Ge, H.H.
PDB entry 8j4o: Crystal Structure of the Acinetobacter baumannii LysR family regulator AceR effector-binding domain with Spermidine
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-04-20
Authors: Ma, J.M., Ge, H.H.
PDB entry 8j4q: Crystal structure of eKatE (extra KatE) from atypical E. coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-04-20
Authors: Yoo, Y.
PDB entry 8j4r: Crystal structure of eKatE (extra KatE) F413Y mutant from atypical E. coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-04-20
Authors: Yoo, Y.
PDB entry 8j4t: GajA-GajB complex
Classification: DNA BINDING PROTEIN
Source organism: Bacillus cereus VD045
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-04-20
Authors: Wei, T., Ma, J., Huo, Y.
PDB entry 8j4u: Structure of HerA-Sir2 complex from Escherichia coli Nezha system
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-04-20
Authors: Chen, Q., Yu, Y.
PDB entry 8j4v: Structure of Mycobacterium thermoresistibile NrdI(oxidised) determined at 1.1 angstrom resolution
Classification: FLAVOPROTEIN
Source organism: Mycolicibacterium thermoresistibile ATCC 19527
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2023-04-21
Authors: Yadav, L.R., Mande, S.C.