LiteFold/PDB huggingface dataset:
PDB entry 9k6t: Cryo-EM Structure of hAGO2D669A-siRNA-target (21-nt)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-22
Authors: Li, Z.Z., Xu, Q.K., Wu, J.P., Shen, E.Z.
PDB entry 9k6u: Pentraxin Domain of PTX3 Octamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-22
Authors: Guo, H.H., Zhang, H.W.
PDB entry 9k6v: Pentraxin Domain of PTX3 Hexamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.65 Å
Deposited: 2024-10-22
Authors: Guo, H.H., Zhang, H.W.
PDB entry 9k6w: Pentraxin Domain of PTX3 Dimer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.5 Å
Deposited: 2024-10-22
Authors: Guo, H.H., Zhang, H.W.
PDB entry 9k6y: Cryo-EM structure of SARS-CoV-2 prototype spike protein in complex with H4 Fab (local refinement)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-10-22
Authors: Zhang, G., Li, L.J., Wu, Y., Gao, G.F.
PDB entry 9k6z: SARS-CoV-2 related bat coronavirus BANAL-52 spike in the locked state
Classification: VIRAL PROTEIN
Source organism: Horseshoe bat sarbecovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-10-22
Authors: Li, Q.Q., Cai, X., Li, X.N., Zhang, Y.B., Li, R., Kang, Z.R., Wan, D.D., Wang, J.X., Yang, J.X., Shi, J.X., Jin, S.L., Peng, Y., Zang, N., Xie, Z.K., Wan, Y.S., Shang, J.
PDB entry 9k70: A (3+1) hybrid G-quadruplex assembled between two strands of human telomeric DNA and RNA
Classification: DNA-RNA HYBRID
Experimental method: SOLUTION NMR
Deposited: 2024-10-22
Authors: Fu, W.Q., Zhang, N.
PDB entry 9k71: Three-dimensional structure of homo-dimer of cystathione beta lyase/PLP from Bacillus cereus(BcPatB)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacillus cereus ATCC 14579
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-10-23
Authors: Liu, Y., Yang, C.
PDB entry 9k72: Crystal structure of TsaBgl using merged datasets
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-10-23
Authors: Nam, K.H.
PDB entry 9k73: Crystal structure of TsaBgl
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-23
Authors: Nam, K.H.
PDB entry 9k75: SARS-CoV-2 related bat coronavirus BANAL-103 spike in the closed state
Classification: VIRAL PROTEIN
Source organism: Coronaviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2024-10-23
Authors: Qingqing, L., Xiao, C., Xiaoning, L., Yibing, Z., Ru, L., Zirui, K., Didi, W., Jiaxu, W., Lili, L., Junxia, Y., Jianxiang, S., Shuiling, J., Ying, P., Na, Z., Yushun, W., Jian, S.
PDB entry 9k76: Crystal structure of human STING in complex with F2W
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16502 Å
Deposited: 2024-10-23
Authors: Feng, Z.W., Zeng, T., Chen, M.R., Xiao, Y.B., Xu, X.L.
PDB entry 9k7b: Cryo-EM structure of human taurine transporter TauT bound with taurine molecules in an inward-open state in the saposin-disc
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-10-23
Authors: Zhang, H., Xu, E.H.
PDB entry 9k7c: Crystal structure of GH57 family amylopullulanase from Aquifex aeolicus mutant E256Q in complex with maltopentaose
Classification: HYDROLASE
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-10-23
Authors: Zhu, Z.M., Wang, W.W., Li, M.J., Xu, Q., Zhou, H., Huang, L.Q., Wang, Q.S., Yu, F.
PDB entry 9k7d: Crystal structure of GH57 family amylopullulanase from Aquifex aeolicus mutant E256Q in complex with Maltohexaose
Classification: HYDROLASE
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-10-23
Authors: Zhu, Z.M., Wang, W.W., Li, M.J., Xu, Q., Zhou, H., Huang, L.Q., Wang, Q.S., Yu, F.
PDB entry 9k7e: Crystal structure of T2R-TTL-taccalonolide Y8 complex
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-10-23
Authors: Yu, Q.W., Wang, Y.X.
PDB entry 9k7f: RNA polymerase II elongation complex apo structure.
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-10-23
Authors: Xu, J., Zhao, W., Zhu, L.
PDB entry 9k7g: Structure of PfENT1 in complex with GSK3
Classification: TRANSPORT PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2024-10-23
Authors: Chen, X.Y., Li, J.L., Wang, X., Deng, D.
PDB entry 9k7h: Crystal structure of dehydrogenase/isomerase FabX from Helicobacter pylori in complex with inhibitor 1872
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-10-23
Authors: Zhang, L., Zhang, L.
PDB entry 9k7i: Gamma-glutamyl peptidase 1 from Arabidopsis thaliana (Glu complex)
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-10-23
Authors: Sone, K., Kashima, T., Miyanaga, A., Fushinobu, S.
PDB entry 9k7j: Gamma-glutamyl peptidase 1 from Arabidopsis thaliana (ligand-free)
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-10-23
Authors: Sone, K., Kashima, T., Miyanaga, A., Fushinobu, S.
PDB entry 9k7k: Gamma-glutamyl peptidase 1 from Arabidopsis thaliana (inactive form)
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-10-23
Authors: Sone, K., Kashima, T., Miyanaga, A., Fushinobu, S.
PDB entry 9k7l: Gamma-glutamyl peptidase 1 from Arabidopsis thaliana (H192N gamma-Glu intermediate)
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-10-23
Authors: Sone, K., Kashima, T., Miyanaga, A., Fushinobu, S.
PDB entry 9k7m: Coprinopsis cinerea GH131 protein CcGH131B E161A in complex with cellobiose
Classification: HYDROLASE
Source organism: Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-10-24
Authors: Shiojima, Y., Tonozuka, T.
PDB entry 9k7n: Cryo-EM structure of human taurine transporter TAUT bound taurine in an occluded state in the saposin-disc
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-24
Authors: Zhang, H., Xu, E.H.
PDB entry 9k7o: Coprinopsis cinerea GH131 protein CcGH131B
Classification: HYDROLASE
Source organism: Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-10-24
Authors: Shiojima, Y., Tonozuka, T.
PDB entry 9k7q: Parkinson disease protein 7 (DJ-1) and Alpha-synuclein (Alpha-syn) complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.58 Å
Deposited: 2024-10-24
Authors: Han, C.W., Kim, D.H.
PDB entry 9k7r: Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth (K form)
Classification: RNA/DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-10-24
Authors: Kondo, J., Ando, S.
PDB entry 9k7s: Structure of PfENT1(S143C,S382C) with inosine
Classification: TRANSPORT PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2024-10-24
Authors: Chen, X.Y., Li, J.L., Wang, X., Deng, D.
PDB entry 9k7t: Crystal structure of designed zinc-induced homotetramer C4-Zn1-HEHE-1
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k7u: Crystal structure of designed zinc-induced heterodimer Heter-Zn2-HEHE-22
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k7v: Structural insights into photosystem II supercomplex of a a siphonous green algae Bryopsis corticulans from intertidal zone
Classification: PHOTOSYNTHESIS
Source organism: Bryopsis corticulans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-10-24
Authors: Liu, X.Y., Wang, W.D.
PDB entry 9k7w: Crystal structure of designed nickel-induced homotrimer C3-Ni1-HH*3-18
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k7x: Crystal structure of designed calcium-induced homotrimer C3-Ca1-DN*3-20
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k7y: Cryo-EM structure of designed zinc-induced icosahedron Cage-i53-Zn1-HEHE-14
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k7z: Cryo-EM structure of designed zinc-induced icosahedron Cage-i53-Zn1-HEHE-16
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k80: Cryo-EM structure of designed zinc-induced filament Fiber-n6-Zn1-HEHE-5
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k81: Cryo-EM structure of designed zinc-induced filament Fiber-n7-Zn1-HEHE-74
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k82: Cryo-EM structure of designed zinc-induced filament Fiber-n5-Zn1-HEHE-917
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k83: Cryo-EM structure of designed zinc-induced filament Fiber-n6-Zn1-HEHE-43
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k84: Cryo-EM structure of designed zinc-induced filament Fiber-n6-Zn1-HEHE-44
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k85: Cryo-EM structure of designed zinc-induced filament Fiber-n6-Zn1-HEHE-46
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k86: Cryo-EM structure of designed zinc-induced filament Fiber-n6-Zn1-HEHE-410
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k87: Cryo-EM structure of designed zinc-induced icosahedron Cage-i53-Zn1-HEHE-5
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k88: Structure of PfENT1(T144C,K375C) with inosine
Classification: TRANSPORT PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2024-10-24
Authors: Chen, X.Y., Li, J.L., Wang, X., Deng, D.
PDB entry 9k89: Cryo-EM structure of designed zinc-induced icosahedron Cage-i53-Zn1-HEHE-6
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8a: Cryo-EM structure of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-34
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8b: Cryo-EM structure of monomer of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-34
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8c: Cryo-EM structure of C2 symmetric interface of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-34
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8d: Cryo-EM structure of C3 symmetric interface of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-34
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8e: Cryo-EM structure of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-35
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8f: Cryo-EM structure of monomer of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-35
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8g: Cryo-EM structure of C3 symmetric interface of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-35
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8h: Cryo-EM structure of C2 symmetric interface of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-35
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8i: Cryo-EM structure of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-36
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8j: Cryo-EM structure of monomer of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-36
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8k: Cryo-EM structure of C2 symmetric interface of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-36
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8l: Cryo-EM structure of C3 symmetric interface of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-36
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-10-24
Authors: Qu, Y.N., Cao, L.X.
PDB entry 9k8m: Hypoxanthine-guanine phosphoribosyltransferase from E. coli with HEPES
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-10-24
Authors: Timofeev, V.I., Shevtsov, M.B., Abramchik, Y.A., Kostromina, M.A., Zayats, E.A., Kuranova, I.P., Esipov, R.S.
PDB entry 9k8n: Solution structure of a short zinc-dependent DNAzyme minGAA
Classification: DNA-RNA HYBRID
Experimental method: SOLUTION NMR
Deposited: 2024-10-24
Authors: Yamasaki, K., Yamasaki, T., Takeuchi, K.
PDB entry 9k8o: Crystal structure of a short zinc-dependent DNAzyme minGAA
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2024-10-24
Authors: Yamasaki, K., Yamasaki, T., Kubota, T.
PDB entry 9k8p: Crystal structure of a short zinc-dependent DNAzyme minGAA, dimeric form
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-10-24
Authors: Yamasaki, K., Yamasaki, T., Kubota, T.
PDB entry 9k8q: Structure of Promiscuous Short Chain reductase Spm14
Classification: BIOSYNTHETIC PROTEIN
Source organism: Spiromastix sp. SCSIO F190
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-10-24
Authors: Jing, L.Q., Peng, M., Chen, Y.Y., Ju, J.H., Wu, D.L.
PDB entry 9k8r: Structure of Promiscuous short chain dehydrogenase Spm14 in complex with NADPH
Classification: BIOSYNTHETIC PROTEIN
Source organism: Spiromastix sp. SCSIO F190
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-10-24
Authors: Jing, L.Q., Peng, M., Chen, Y.Y., Ju, J.H., Wu, D.L.
PDB entry 9k8s: Cryo-EM structure of HE30 polymorph 1
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-24
Authors: Xia, W.C., Liu, C.
PDB entry 9k8t: Cryo-EM structure of HE30 polymorph 2
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-24
Authors: Xia, W.C., Liu, C.
PDB entry 9k8u: Ethanol dehydrogenase of Bursaphelenchus xylophilus
Classification: OXIDOREDUCTASE
Source organism: Bursaphelenchus xylophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2024-10-24
Authors: Xing, Z.F., Luo, X., Li, X.Y., Song, R.J., Song, B.A.
PDB entry 9k8v: Cryo-EM structure of the Type II secretion system protein from Vibrio cholerae
Classification: PROTEIN TRANSPORT
Source organism: Vibrio cholerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2024-10-24
Authors: Liu, R.H., Feng, Q.S., Zhang, K., Dai, X., Dai, J., Guo, X.R., Lin, W.F., Wang, Z.F., Fu, Y., Li, Y.
PDB entry 9k8w: Crystal structure of the calcium indicator GCaMP6s-BrUS in calcium-bound state
Classification: FLUORESCENT PROTEIN
Source organism: homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-10-24
Authors: Varfolomeeva, L.A., Simonyan, T.R., Mamontova, A.V., Bogdanov, A.M., Popov, V.O., Boyko, K.M.
PDB entry 9k8x: Crystal structure of the calcium indicator GCaMP6s-BrUS-145 in calcium-bounded state
Classification: FLUORESCENT PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-10-24
Authors: Varfolomeeva, L.A., Simonyan, T.R., Mamontova, A.V., Popov, V.O., Bogdanov, A.M., Boyko, K.M.
PDB entry 9k8y: Structure of PfENT1(T144C,K375C,N60R,Q266R) with inosine- outward-facing state
Classification: TRANSPORT PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2024-10-25
Authors: Chen, X.Y., Li, J.L., Wang, X., Deng, D.
PDB entry 9k8z: Crystal structure of DNA/RNA duplex obtained using the counter diffusion method in space (K form)
Classification: RNA/DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-10-25
Authors: Kondo, J., Ando, S.
PDB entry 9k90: Structure of PfENT1(S143C,S382C)-occluded state
Classification: TRANSPORT PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2024-10-25
Authors: Chen, X.Y., Li, J.L., Wang, X., Deng, D.
PDB entry 9k92: Cryo-EM structure of human signal peptide peptidase like 2A (SPPL2a)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-25
Authors: Zhou, R., Huang, G., Guo, X., Wang, J., Ge, X., Shi, Y.
PDB entry 9k93: Cryo-EM structure of human signal peptide peptidase like 2A (SPPL2a) in complex with L685,458
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-10-25
Authors: Zhou, R., Huang, G., Guo, X., Wang, J., Ge, X., Shi, Y.
PDB entry 9k94: CRP-HCAb2 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2024-10-25
Authors: Li, Y.J.
PDB entry 9k95: Cryo-EM structure of human gamma-secretase in complex with compound E
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-25
Authors: Zhou, R., Huang, G., Guo, X., Wang, J., Ge, X., Shi, Y.
PDB entry 9k97: Solution structure of DRB2 dsRBD2
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2024-10-25
Authors: Patra, D., Deshmukh, M.V.
PDB entry 9k98: Crystal structure of Plasmoredoxin, a disulfide oxidoreductase from Plasmodium falciparum
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-10-26
Authors: Panicker, L.
PDB entry 9k99: Crystal structure of Setaria viridis SPS complexed with Aclonifen (surface polar residue mutant)
Classification: TRANSFERASE
Source organism: Setaria viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.655 Å
Deposited: 2024-10-26
Authors: Xiao, H., Li, M., Yang, G.-F.
PDB entry 9k9b: Apo form of Solanum tuberosum solanesyl diphosphate synthase
Classification: TRANSFERASE
Source organism: Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.189 Å
Deposited: 2024-10-26
Authors: Xiao, H., Li, M., Yang, G.-F.
PDB entry 9k9c: Crystal structure of Sorghum bicolor SPS complexed with Zoledronate
Classification: TRANSFERASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.286 Å
Deposited: 2024-10-26
Authors: Xiao, H., Li, M., Yang, G.-F.
PDB entry 9k9g: Cryo-EM structure of Anabaena tRNA(Leu) precursor at Apo state
Classification: RNA
Source organism: Anabaena
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-10-26
Authors: Zhang, X., Li, S., Zhang, K.
PDB entry 9k9h: Cryo-EM structure of Anabaena tRNA(Leu) precursor at Pre-1S state
Classification: RNA
Source organism: Anabaena
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-10-26
Authors: Zhang, X., Li, S., Zhang, K.
PDB entry 9k9j: Cryo-EM structure of linear intron of Anabaena tRNA(Leu) precursor
Classification: RNA
Source organism: Anabaena
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-10-26
Authors: Zhang, X., Li, S., Zhang, K.
PDB entry 9k9k: Cryo-EM structure of circular intron of Anabaena tRNA(Leu) precursor
Classification: RNA
Source organism: Anabaena
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-10-26
Authors: Zhang, X., Li, S., Zhang, K.
PDB entry 9k9l: Cryo-EM structure of the human CENP-A-H4 octasome.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2024-10-27
Authors: Nozawa, K., Takizawa, Y., Kurumizaka, H.
PDB entry 9k9m: X-ray structure of FBB18 from Chlamydomonas reinhardtii.
Classification: MOTOR PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-10-27
Authors: Sahashi, Y., Tanaka, H., Shimo-Kon, R., Yamamoto, R., Kurisu, G., Kon, T.
PDB entry 9k9n: Cryo-EM structure of MjHKU4r-CoV-1 receptor-binding domain complexed with human CD26
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Tylonycteris bat coronavirus HKU4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-10-27
Authors: Sun, J.Q.
PDB entry 9k9p: crystal structure of Arabidopsis DCL4 dsRBD2 in complex with DRB4 CTD
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-10-27
Authors: Wang, C., Du, J.
PDB entry 9k9r: MPXV DNA polymerase in complex with primer/5U template DNA
Classification: REPLICATION/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-10-27
Authors: Xie, Y.F., Kuai, L., Peng, Q., Wang, Q., Wang, H., Li, X.M., Qi, J.X., Ding, Q., Shi, Y., Gao, F.
PDB entry 9k9s: MPXV DNA polymerase in complex with primer/4U template DNA
Classification: REPLICATION/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2024-10-27
Authors: Xie, Y.F., Kuai, L., Peng, Q., Wang, Q., Wang, H., Li, X.M., Qi, J.X., Ding, Q., Shi, Y., Gao, F.
PDB entry 9k9t: MPXV DNA polymerase in complex with CDV
Classification: REPLICATION/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-10-27
Authors: Xie, Y.F., Kuai, L., Peng, Q., Wang, Q., Wang, H., Li, X.M., Qi, J.X., Ding, Q., Shi, Y., Gao, F.
PDB entry 9k9u: MPXV DNA polymerase complex in editing state 1
Classification: REPLICATION/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-10-27
Authors: Xie, Y.F., Kuai, L., Peng, Q., Wang, Q., Wang, H., Li, X.M., Qi, J.X., Ding, Q., Shi, Y., Gao, F.
PDB entry 9k9v: MPXV DNA polymerase complex in editing state 2
Classification: REPLICATION/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-10-27
Authors: Xie, Y.F., Kuai, L., Peng, Q., Wang, Q., Wang, H., Li, X.M., Qi, J.X., Ding, Q., Shi, Y., Gao, F.
PDB entry 9k9w: structure of bundle-shaped PBS with short rod
Classification: PHOTOSYNTHESIS
Source organism: Gloeobacter violaceus PCC 7421
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-28
Authors: Sui, S.-F., Ma, J., You, X., Sun, S.
PDB entry 9k9z: Room-temperature structure of lysozyme determined by serial synchrotron crystallography (MOSFLM)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-28
Authors: Nam, K.H.
PDB entry 9ka0: Room-temperature structure of lysozyme determined by serial synchrotron crystallography (XGANDALF)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-28
Authors: Nam, K.H.
PDB entry 9ka2: Crystal structure of beta-ketoacyl-ACP synthase FabH from E. coli
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-10-28
Authors: Zhang, L., Zhang, L., Cai, C.
PDB entry 9ka3: The cryo-EM structure of Ac-K58D_G51DA53T a-syn fibril.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2024-10-28
Authors: Zhao, Q.Y., Tao, Y.Q., Li, D., Liu, C.
PDB entry 9ka4: The cryo-EM structure of MSA-like fold (P1) formed under the palette stratagy.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-10-28
Authors: Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.
PDB entry 9ka5: Crystal structure of beta-ketoacyl-ACP synthase FabH C112Q from E. coli
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-10-28
Authors: Zhang, L., Zhang, L., Cai, C.
PDB entry 9ka6: Crystal structure of beta-ketoacyl-ACP synthase FabH C112Q in complex with acyl-ACP from E. coli
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-10-28
Authors: Zhang, L., Zhang, L., Cai, C.
PDB entry 9ka7: Crystal structure of beta-ketoacyl-ACP synthase FabH C112Q in complex with malonyl-ACP from E. coli
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-10-28
Authors: Zhang, L., Zhang, L., Cai, C.
PDB entry 9ka8: Structure of the recombinant structure of the subunit of allophycocyanin (APC) and the formate dehydrogenase (FDH)
Classification: PHOTOSYNTHESIS
Source organism: Candida boidinii; Picosynechococcus sp. PCC 7003
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2024-10-28
Authors: Duan, M.P., Zhang, T.
PDB entry 9kad: Solution NMR structure of an RNA duplex containing pure CAG repeats
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-10-28
Authors: Guo, P., Wan, L.
PDB entry 9kae: CryoEM structure of LTag bound to SV40 EP half origin DNA
Classification: TRANSLOCASE
Source organism: Betapolyomavirus macacae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-28
Authors: Danazumi, A.U., Shahid, T., Tehseen, M., Alhudhali, L., Clark, A., Savva, C.G., Hamdan, S.M., De Biasio, A.
PDB entry 9kah: Crystal Structure of Chalcone Syntase and Chalcone Isomerase-like Protein Complex from Physcomitrella patens
Classification: TRANSFERASE
Source organism: Physcomitrium patens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-10-28
Authors: Imaizumi, R., Waki, T., Yasuda, A., Yanai, T., Takeshita, K., Sakai, N., Yamamoto, M., Nakayama, T., Yamashita, S.
PDB entry 9kai: Crystal Structure of Chalcone Isomerase-like Protein from Physcomitrella patens
Classification: TRANSFERASE
Source organism: Physcomitrium patens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-10-28
Authors: Imaizumi, R., Waki, T., Yasuda, A., Yanai, T., Takeshita, K., Sakai, N., Yamamoto, M., Nakayama, T., Yamashita, S.
PDB entry 9kaj: Crystal Structure of Chalcone Syntase from Physcomitrella patens complexed with Coenzyme A
Classification: TRANSFERASE
Source organism: Physcomitrium patens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2024-10-28
Authors: Imaizumi, R., Waki, T., Yasuda, A., Yanai, T., Takeshita, K., Sakai, N., Yamamoto, M., Nakayama, T., Yamashita, S.
PDB entry 9kak: CryoEM structure of LTag bound to SV40 AT half origin DNA
Classification: TRANSLOCASE
Source organism: Betapolyomavirus macacae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-29
Authors: Danazumi, A.U., Shahid, T., Tehseen, M., Alhudhali, L., Clark, A., Savva, C.G., Hamdan, S.M., De Biasio, A.
PDB entry 9kal: The cryo-EM structure of Ac-E57A_G51DA53T a-syn fibril.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-10-29
Authors: Zhao, Q.Y., Tao, Y.Q., Li, D., Liu, C.
PDB entry 9kan: Crystal structure of the C. jejuni VapD-VapW toxin-antitoxin complex
Classification: TOXIN/ANTITOXIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-10-29
Authors: Popov, A., Gilep, K., Tagami, S.
PDB entry 9kao: CTP synthetase of pseudomonas aeruginosa PAO1
Classification: LIGASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-10-29
Authors: Wang, C.C.
PDB entry 9kap: Cryo-EM structure of glycopeptide fibril
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-29
Authors: Xia, W.C., Liu, C.
PDB entry 9kar: Solution NMR structure of a new lasso peptide streptacidin
Classification: ANTIBIOTIC
Source organism: Streptacidiphilus jiangxiensis
Experimental method: SOLUTION NMR
Deposited: 2024-10-29
Authors: Huang, J.W., Cao, C.Y.
PDB entry 9kas: Crystal structure of anti-sulfonylurea antibody scFv in complex with chlorpropamide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2024-10-29
Authors: Yu, X.T., Gao, Y.G., Lei, H.T.
PDB entry 9kat: Crystal structure of anti-sulfonylurea antibody scFv apo form
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2024-10-29
Authors: Yu, X.T., Gao, Y.G., Lei, H.T.
PDB entry 9kau: Three-dimensional structure of homo-dimer of cystathione beta lyase/PLP/+L-alliin complex from Bacillus cereus(BcPatB)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacillus cereus ATCC 14579
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-10-29
Authors: Liu, Y., Yang, C.
PDB entry 9kax: The outward-open structure of BjSemiSWEET in native cellular membranes determined by in situ solid-state NMR
Classification: MEMBRANE PROTEIN
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: SOLID-STATE NMR
Deposited: 2024-10-30
Authors: Xie, H., Yang, J.
PDB entry 9kay: Bioengineered protein nanocarrier facilitating siRNA escape from lysosomes for targeted RNAi therapy in glioblastoma
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.73 Å
Deposited: 2024-10-30
Authors: Chen, X., Fan, K.
PDB entry 9kb0: 3-hydroxyisobutyrate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Micromonospora echinaurantiaca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-10-30
Authors: Fang, P., Liu, Z.
PDB entry 9kb1: The Structure of the Carbohydrate Deacetylase PpOngB from Pseudoalteromonas prydzensis ACAM 620.
Classification: DE NOVO PROTEIN
Source organism: Pseudoalteromonas prydzensis ACAM 620
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-10-30
Authors: Wang, J.P., Li, P.Y.
PDB entry 9kb3: The structure of the carbohydrate deacetylase inactive mutant PpOngB in complex with GlcNAc1A.
Classification: PROTEIN BINDING
Source organism: Pseudoalteromonas prydzensis ACAM 620
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-10-30
Authors: Wang, J.P., Li, P.Y.
PDB entry 9kb4: The structure of the PpOngB-citrate
Classification: DE NOVO PROTEIN
Source organism: Pseudoalteromonas prydzensis ACAM 620
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-10-30
Authors: Wang, J.P., Li, P.Y.
PDB entry 9kb6: Cryo-EM structure of LGR4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-10-30
Authors: Peng, Y., Fujimura, A., Asami, J., Zhang, Z., Shimizu, T., Ohto, U.
PDB entry 9kb7: Cryo-EM structure of LGR4-RSPO2 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-10-30
Authors: Peng, Y., Fujimura, A., Asami, J., Zhang, Z., Shimizu, T., Ohto, U.
PDB entry 9kb8: Cryo-EM structure of LGR4-RSPO2-ZNRF3 complex (1:1:2)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-10-30
Authors: Peng, Y., Fujimura, A., Asami, J., Zhang, Z., Shimizu, T., Ohto, U.
PDB entry 9kb9: Cryo-EM structure of LGR4-RSPO2-ZNRF3 complex (2:2:2)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2024-10-30
Authors: Peng, Y., Fujimura, A., Asami, J., Zhang, Z., Shimizu, T., Ohto, U.
PDB entry 9kba: The occluded structures of BjSemiSWEET in native cellular membranes determined by in situ solid-state NMR
Classification: MEMBRANE PROTEIN
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: SOLID-STATE NMR
Deposited: 2024-10-30
Authors: Xie, H., Yang, J.
PDB entry 9kbb: 3-hydroxyisobutyrate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Micromonospora echinaurantiaca
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-10-30
Authors: Fang, P., Liu, Z.
PDB entry 9kbc: 3-hydroxyisobutyrate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Micromonospora echinaurantiaca
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-10-30
Authors: Fang, P., Liu, Z.
PDB entry 9kbd: Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO3 SCF ubiquition ligase complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-10-30
Authors: Wei, J., Xu, C.
PDB entry 9kbe: Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis complexed with indolcarboxamide
Classification: MEMBRANE PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-10-30
Authors: Murakami, S., Okada, U., Yamashita, E., Pieroni, M., Carosati, E.
PDB entry 9kbf: Cryo-EM structure of the SKP1-FBXO3 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-10-30
Authors: Wei, J., Xu, C.
PDB entry 9kbg: The structure of B19V NS1_2-570/AMPPNP
Classification: DNA BINDING PROTEIN
Source organism: Human parvovirus B19
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-10-30
Authors: Gan, J., Zhang, Y.
PDB entry 9kbh: The structure of B19V NS1_2-570/ssDNA/AMPPNP
Classification: DNA BINDING PROTEIN/DNA
Source organism: Human parvovirus B19; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-30
Authors: Gan, J., Zhang, Y.
PDB entry 9kbi: The structure of B19V NS1_2-570/dsDNA/AMPPNP
Classification: DNA BINDING PROTEIN/DNA
Source organism: Human parvovirus B19; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2024-10-30
Authors: Gan, J., Zhang, Y.
PDB entry 9kbj: The structure of B19V NS1_200-501/AMPPNP
Classification: DNA BINDING PROTEIN
Source organism: Human parvovirus B19
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-10-30
Authors: Gan, J., Zhang, Y.
PDB entry 9kbk: Cryo-EM structure of the SPS3-FBN5 complex in a 2:2 state (class 3)
Classification: TRANSFERASE
Source organism: Oryza sativa subsp. japonica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2024-10-31
Authors: Xiao, H., Wang, Y.-W., Zhu, P., Yang, G.-F.
PDB entry 9kbl: Crystal structure of T2R-TTL-IKP104
Classification: CELL CYCLE
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2024-10-31
Authors: Yan, W., Yang, J.
PDB entry 9kbn: Crystal structure of T2R-TTL-IKP104-Colchicine
Classification: CELL CYCLE
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2024-10-31
Authors: Yan, W., Yang, J.H.
PDB entry 9kbo: Crystal structure of human Shiftless (SFL) containing phosphorylation sites Ser249, Thr250, Thr253 and Ser256
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-10-31
Authors: Zhang, Y., Li, Z., Chong, H., Hou, P., Hao, W., Li, M., Liu, Z., Jia, W., Qin, B., He, Y., Cui, S.
PDB entry 9kbq: Crystal structure of PHAb10, a peptidoglycan hydrolase with thermal stability and broad-spectrum
Classification: LYASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-10-31
Authors: Hu, F.
PDB entry 9kbr: Crystal structure of the methyltransferase-ribozyme 1 bound to DNA substrate (with 1-methyl-adenosine)
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-10-31
Authors: He, Y., Yan, K., Lilley, D.M.J., Huang, L.
PDB entry 9kbs: Crystal structure of PHAb11, another peptidoglycan hydrolase with thermal stability and broad-spectrum
Classification: LYASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-10-31
Authors: Hu, F.
PDB entry 9kbt: Crystal structure of PHAB8, a peptidoglycan hydrolase with relatively weak thermal stability and broad-spectrum.
Classification: LYASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-10-31
Authors: Hu, F.
PDB entry 9kbu: Crystal structure of an ankyrin protein
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-31
Authors: Ngo, K.H., Heddi, B., Winnerdy, F.R., Phan, A.T.
PDB entry 9kbw: CryoEM structure of microtubule bound with GAS2-GAR domain.
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-31
Authors: An, J., Imasaki, T., Narita, A., Niwa, S., Sasaki, R., Makino, T., Nitta, R., Kikkawa, M.
PDB entry 9kbx: CryoEM structure of F-actin bound with GAS2-CH3 domain.
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-31
Authors: An, J., Imasaki, T., Narita, A., Niwa, S., Sasaki, R., Makino, T., Nitta, R., Kikkawa, M.
PDB entry 9kby: Cryo-EM structure of DCL4-Hairpin RNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-10-31
Authors: Wang, C., Du, J.
PDB entry 9kbz: Cryo-EM structure of DCL4-DRB4CTD-dsRNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-10-31
Authors: Wang, C., Du, J.
PDB entry 9kc2: Cryo-EM structure of ZSQ07-bound alpha-synuclein fibril polymorph 6A6B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-31
Authors: Zhang, S.Q., Liu, C.
PDB entry 9kc5: PSI-LHCI of the red alga Galdieria sulphuraria NIES-3638
Classification: PHOTOSYNTHESIS
Source organism: Galdieria sulphuraria
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2024-11-01
Authors: Kato, K., Nakajima, Y., Shen, J.R., Nagao, R.
PDB entry 9kc9: Cryo-EM structure of docked mouse bestrophin-1 in a partial open state
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-01
Authors: Lim, H.H., Kim, K.W., Ko, A.
PDB entry 9kca: Cryo-EM structure of docked mouse bestrophin-1 in a closed state
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-11-01
Authors: Lim, H.H., Kim, K.W., Ko, A.
PDB entry 9kcc: DNA duplex containing copper-mediated 5-fluorouracil-cytosine base pairs
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-11-01
Authors: Kondo, J., Hirabayashi, K., Torigoe, H., Adachi, S.
PDB entry 9kce: Crystal Structure of the ATP analog-bound closed state of Thermotoga maritima MutS2
Classification: DNA BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2024-11-01
Authors: Fukui, K., Murakawa, T., Yano, T.
PDB entry 9kcf: Bovine Flagellar TRiC
Classification: CHAPERONE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-11-01
Authors: Cong, Y., Meng, X.
PDB entry 9kcg: Cryo-EM structure of human sodium pump WT in (3Na+)E1-AMPPCP state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-01
Authors: Abe, K., Dou, Y., Suzuki, J.
PDB entry 9kch: Cryo-EM structure of inner membrane TolQRA complex in CYMAL-6-Neopentyl Glycol detergent micelles
Classification: PROTON TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.19 Å
Deposited: 2024-11-01
Authors: Yeow, J., Chng, S.S.
PDB entry 9kci: Cryo-EM structure of human sodium pump WT in (2K+)E2-AlF state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-01
Authors: Abe, K., Dou, Y., Suzuki, J.
PDB entry 9kcj: Cryo-EM structure of human sodium pump E1003 in (3Na+)E1-AMPPCP state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-01
Authors: Abe, K., Dou, Y., Suzuki, J.
PDB entry 9kck: Cryo-EM structure of human sodium pump E1003K in (2K+)E2-AlF state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-01
Authors: Abe, K., Dou, Y., Suzuki, J.
PDB entry 9kcl: Cryo-EM structure of human sodium pump E1003K complexed with NDRG3 in (2Na+)E1-AMPPCP state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-01
Authors: Abe, K., Dou, Y., Suzuki, J.
PDB entry 9kcm: Cryo-EM structure of human sodium pump E1003K complexed with NDRG3 and TMX2 in (2Na+)E1-AMPPCP state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-01
Authors: Abe, K., Matsui, R., Dou, Y., Suzuki, J.
PDB entry 9kcn: Cryo-EM structure of FD4-bound alpha-synuclein fibril polymorph 6A6B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-11-01
Authors: Zhang, S.Q., Liu, C.
PDB entry 9kco: Cryo-EM structure of FD4-bound alpha-synuclein MSA-like fibril
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-01
Authors: Zhang, S.Q., Liu, C.
PDB entry 9kcp: Cryo-EM structure of ACI-12589-bound alpha-synuclein fibril polymorph 6A6B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-11-01
Authors: Zhang, S.Q., Liu, C.
PDB entry 9kcq: Crystal structure of an ankyrin protein in complex with G-quadruplex
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-11-02
Authors: Ngo, K.H., Heddi, B., Winnerdy, F.R., Phan, A.T.
PDB entry 9kcr: Cryo-EM structure of human sodium pump E1003K complexed with NDRG3 in (2Na+)E1 state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-02
Authors: Abe, K., Matsui, R., Dou, Y., Suzuki, J.
PDB entry 9kcs: Crystal structure of Tagatose 4-epimerase with one glycerol from Thermoprotei archaeon
Classification: ISOMERASE
Source organism: Thermoprotei archaeon
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-11-02
Authors: Chen, J., Luo, G., Huang, Z., Ni, D., Zhu, Y., Xu, W., Zhang, W., Mu, W.