LiteFold/PDB huggingface dataset:
PDB entry 9i6n: Hen egg-white lysozyme structure collected at EuXFEL SPB/SFX with HVE injection method
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-30
Authors: Zabelskii, D., Round, E., Han, H., von Stetten, D., Melo, D., de Wijn, R., Bean, R., Round, A.
PDB entry 9i6o: Hen egg-white lysozyme structure embedded in LCP medium at 95% relative humidity
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-30
Authors: Zabelskii, D., Round, E., Han, H., von Stetten, D., Melo, D., de Wijn, R., Bean, R., Round, A.
PDB entry 9i6p: Hen egg-white lysozyme structure embedded in LCP medium at 85% relative humidity
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-30
Authors: Zabelskii, D., Round, E., Han, H., von Stetten, D., Melo, D., de Wijn, R., Bean, R., Round, A.
PDB entry 9i6q: Structure of Fab-Fragment GB11 agains tumour associated carbohydrate antigens.
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2025-01-31
Authors: Freitag, A., Khilji, S.K., Nedielkov, R., Kumar, S.M., Krummhaar, M., Luehle, J., Goerdeler, F., Arndt, J., Kamphues, C., Mroginski, M.A., Roth, C., Seeberger, P.H., Moeller, H.M., Moscovitz, O.
PDB entry 9i6s: 14-3-3sigma binding to the ERa peptide and compound 28
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i6t: 14-3-3sigma binding to the ERa peptide and compound 32
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i6u: 14-3-3sigma binding to the ERa peptide and compound 33
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i6v: 14-3-3sigma binding to the ERa peptide and compound 40
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i6w: 14-3-3sigma binding to the ERa peptide and compound 41
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i6x: 14-3-3sigma binding to the ERa peptide and compound 42
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i6y: 14-3-3sigma binding to the ERa peptide and compound 1
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i6z: 14-3-3sigma binding to the ERa peptide and compound 2
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i70: 14-3-3sigma binding to the ERa peptide and compound 17
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i71: 14-3-3sigma binding to the ERa peptide and compound 19
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i72: 14-3-3sigma binding to the ERa peptide and compound 10
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i73: 14-3-3sigma binding to the ERa peptide and compound 20
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i74: 14-3-3sigma binding to the ERa peptide and compound 21
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i75: 14-3-3sigma binding to the ERa peptide and compound 25
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-01-31
Authors: Pennings, M.A.M., Arkin, M.R.
PDB entry 9i76: Pseudomonas aeruginosa FabF C164A in complex with 4-(1H-pyrazole-3-carboxamido)butanoic acid
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-01-31
Authors: Yadrykhins'ky, V., Brenk, R.
PDB entry 9i77: Deubiquitinase DUB16 from Leishmania donovani
Classification: LIGASE
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-31
Authors: Brannigan, J.A., Dodson, E.J., Wilkinson, A.J.
PDB entry 9i78: Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
Classification: RIBOSOME
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-01-31
Authors: Yang, T.J., McDowell, M.A.
PDB entry 9i79: Xylose Isomerase collected at 20C using time-resolved serial synchrotron crystallography with Glucose at 180 seconds
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-31
Authors: Schulz, E.C., Prester, A., Stetten, D.V., Gore, G., Hatton, C.E., Bartels, K., Leimkohl, J.P., Schikora, H., Ginn, H.M., TellKamp, F., Mehrabi, P.
PDB entry 9i7a: Crystal structure of HRP-2 PWWP domain with C64S mutation - Crystal form P1 type 1
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2025-01-31
Authors: Vantieghem, T., Osipov, E.M., Strelkov, S.V.
PDB entry 9i7b: Crystal structure of HRP-2 PWWP domain with C64S mutation - Crystal form C2
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-01-31
Authors: Vantieghem, T., Osipov, E.M., Strelkov, S.V.
PDB entry 9i7c: Crystal structure of wild-type HRP-2 PWWP domain - Crystal form P212121 type 1
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-01-31
Authors: Osipov, E.M., Beelen, S., Vantieghem, T., Strelkov, S.V.
PDB entry 9i7d: Crystal structure of wild-type HRP-2 PWWP domain - Crystal form P212121 type 2
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2025-01-31
Authors: Osipov, E.M., Beelen, S., Vantieghem, T., Strelkov, S.V.
PDB entry 9i7e: Crystal structure of HRP-2 PWWP domain with C64S mutation - Crystal form P1 type 2
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-01-31
Authors: Vantieghem, T., Osipov, E.M., Strelkov, S.V.
PDB entry 9i7f: Crystal structure of HRP-2 PWWP domain with C64S mutation - Crystal form P21 type 1
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-01-31
Authors: Vantieghem, T., Osipov, E.M., Strelkov, S.V.
PDB entry 9i7g: Crystal structure of HRP-2 PWWP domain with C64S mutation - Crystal form P21 type 3
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-01-31
Authors: Vantieghem, T., Osipov, E.M., Strelkov, S.V.
PDB entry 9i7h: Crystal structure of HRP-2 PWWP domain with C64S mutation - Crystal form P21 type 2
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-01-31
Authors: Vantieghem, T., Osipov, E.M., Strelkov, S.V.
PDB entry 9i7i: Crystal structure of HRP-2 PWWP domain with C64S mutation - Crystal form P212121
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-01-31
Authors: Vantieghem, T., Osipov, E.M., Strelkov, S.V.
PDB entry 9i7j: Crystal structure of HRP-2 PWWP domain with C64S mutation - Crystal form P21212
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-01-31
Authors: Vantieghem, T., Osipov, E.M., Strelkov, S.V.
PDB entry 9i7k: Pseudomonas aeruginosa FabF C164A in complex with N-(3-(2-(1H-pyrrol-1-yl)propanamido)-2-hydroxy-2-methylpropyl)-1H-pyrazole-3-carboxamide
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.827 Å
Deposited: 2025-01-31
Authors: Yadrykhinsky, V., Brenk, R.
PDB entry 9i7l: Xylose Isomerase collected at 50C using time-resolved serial synchrotron crystallography with Glucose at 180 seconds
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-31
Authors: Schulz, E.C., Prester, A., Stetten, D.V., Gore, G., Hatton, C.E., Bartels, K., Leimkohl, J.P., Schikora, H., Ginn, H.M., Tellkamp, F., Mehrabi, P.
PDB entry 9i7m: EAAT1 thermostabilized mutant in Complex with L-Asp, Metal Ions, and the allosteric inhibitor UCPH101 in Salipro
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-01-31
Authors: Horn, G., Fu, L., Madej, M.G., Ziegler, C.
PDB entry 9i7n: Beta-lactoglobulin complex with retinol post lyophilization
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-01-31
Authors: Figueiredo, M.R.F., Pereira, P.J.B., Martins, P.M.M.
PDB entry 9i7o: Beta-lactoglobulin complex with retinol
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-01-31
Authors: Figueiredo, M.R.F., Pereira, P.J.B., Martins, P.M.M.
PDB entry 9i7p: CryoEM structure of the Chaetomium thermophilum TOM core complex at 3.2 angstrom resolution
Classification: MEMBRANE PROTEIN
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-01-31
Authors: Agip, A.N.A., Ornelas, P., Yang, T.J., Ermanno, U., Haeder, S., McDowell, M.A., Kuehlbrandt, W.
PDB entry 9i7s: CryoEM structure of the Chaetomium thermophilum TOM holo complex at 3.2 angstrom resolution (pALDH treated)
Classification: MEMBRANE PROTEIN
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-01
Authors: Agip, A.N.A., Ornelas, P., Yang, T.J., Ermanno, U., Haeder, S., McDowell, M.A., Kuehlbrandt, W.
PDB entry 9i7t: CryoEM structure of the Chaetomium thermophilum TOM holo complex at 3.8 angstrom resolution
Classification: MEMBRANE PROTEIN
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-01
Authors: Agip, A.N.A., Ornelas, P., Yang, T.J., Ermanno, U., Haeder, S., McDowell, M.A., Kuehlbrandt, W.
PDB entry 9i7u: Cryo-EM structure of NDUFA4 bound complex IV within the respirasome complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-02-02
Authors: Nguyen, M.D., Singh, V., Rorbach, J.
PDB entry 9i7v: EAAT1 thermostabilized mutant in Complex with Rubidium, and the allosteric inhibitor UCPH101 in DDS/CHS
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2025-02-02
Authors: Horn, G., Fu, L., Madej, M.G., Ziegler, C.
PDB entry 9i7w: Extended and wrapped protein P7 dimers of dimers, the P1 layer and the RNA-dependent RNA polymerase P2 in transcribing particles of bacteriophage phi6
Classification: VIRAL PROTEIN
Source organism: Cystovirus phi6; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2025-02-03
Authors: Kumpula, E.-P., Ilca, S.L., Huiskonen, J.T.
PDB entry 9i7y: Crystal Structure of KRasG13C in Complex with Nucleotide-based Covalent Inhibitor 7b
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-03
Authors: Niggenaber, J., Mueller, M.P., Rauh, D.
PDB entry 9i7z: LecA in complex with 2-fluoro non-carbohydrate glycomimetic
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-03
Authors: Varrot, A.
PDB entry 9i80: LecA in complex with a tolcapone derivative glycomimetic
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-02-03
Authors: Varrot, A.
PDB entry 9i81: SARS-CoV-2 RdRp bound to a stack of three HeE1-2Tyr molecules
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-02-04
Authors: Kabinger, F., Doze, V., Schmitzova, J., Lidschreiber, M., Dienemann, C., Cramer, P.
PDB entry 9i86: Enterobacteriaphage PRD1 - P12 protein filament in complex with poly(dT) ssDNA
Classification: REPLICATION
Source organism: Enterobacteria phage PRD1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-02-04
Authors: Degen, M., Traeger, K.L., Hiller, S.
PDB entry 9i88: Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
Classification: RIBOSOME
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-02-04
Authors: Novotna, M., Boissier, F., Balikova Novotna, G., Innis, C.A.
PDB entry 9i89: Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
Classification: RIBOSOME
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-02-04
Authors: Novotna, M., Boissier, F., Balikova Novotna, G., Innis, C.A.
PDB entry 9i8a: NXT1-NXF1 complex crystallized in space group P65 2 2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.501 Å
Deposited: 2025-02-04
Authors: Koekemoer, L., Fairhead, M., Wright, N.D., Bowesman-Jones, H.J., Adams, C.J., Von Delft, F.
PDB entry 9i8b: NMR-based model of an A-form 20mer dsRNA
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2025-02-04
Authors: Mueller-Hermes, C., Sattler, M.
PDB entry 9i8c: GBSV1 portal protein without the N-terminal tail
Classification: VIRAL PROTEIN
Source organism: Geobacillus phage GBSV1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-02-04
Authors: Chong, P.J., Chechik, M., Jenkins, H., Greive, S., Antson, F.
PDB entry 9i8d: Structure of Encapsulin from Arthrobacter sp.
Classification: CYTOSOLIC PROTEIN
Source organism: Arthrobacter sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-04
Authors: Belyy, A.
PDB entry 9i8e: Structure of Encapsulin from Dendrosporobacter quercicolus
Classification: CYTOSOLIC PROTEIN
Source organism: Dendrosporobacter quercicolus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-04
Authors: Belyy, A.
PDB entry 9i8f: Structure of Encapsulin from Dendrosporobacter quercicolus, mutant N198W
Classification: CYTOSOLIC PROTEIN
Source organism: Dendrosporobacter quercicolus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-04
Authors: Belyy, A.
PDB entry 9i8g: Inwards conformation' of the human gamma-TuRC from purified centrosomes obtained by rigid body docking
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 22.4 Å
Deposited: 2025-02-04
Authors: Hofer, F.W., Pfeffer, S.
PDB entry 9i8h: Outwards conformation' of the human gamma-TuRC from purified centrosomes obtained by rigid body docking
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 23.2 Å
Deposited: 2025-02-04
Authors: Hofer, F.W., Pfeffer, S.
PDB entry 9i8i: cryoEM structure of HIV-1 KAKA/G225R mature CA hexamer
Classification: VIRUS
Source organism: HIV-1 06TG.HT008
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-02-05
Authors: Zhu, Y., Shen, J., Shen, Y., Xu, J., Zhang, P.
PDB entry 9i8j: AB Spike of RHDV mutant N15
Classification: VIRAL PROTEIN
Source organism: Rabbit hemorrhagic disease virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-05
Authors: Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.
PDB entry 9i8k: Beta-catenin armadillo (150-663)
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-05
Authors: Klejnot, M., Skowron, A.N., Pastok, M.W., Gorecka-Minakowska, K.M., Wisniewski, J., Walczak, M.J.
PDB entry 9i8l: X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2</sub>] at 310 K
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.831 Å
Deposited: 2025-02-05
Authors: Tito, G., Ferraro, G., Merlino, A.
PDB entry 9i8m: NEDD1-bound native vertebrate gamma-tubulin ring complex from Xenopus laevis, focused reconstruction
Classification: CELL CYCLE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-02-05
Authors: Vermeulen, B.J.A., Pfeffer, S.
PDB entry 9i8n: NEDD1-bound native vertebrate gamma-tubulin ring complex from Xenopus laevis
Classification: CELL CYCLE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2025-02-05
Authors: Vermeulen, B.J.A., Pfeffer, S.
PDB entry 9i8o: Beta-Catenin R4 with Compound 1
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-02-05
Authors: Skowron, A.N., Klejnot, M., Pastok, M.W., Gorecka-Minakowska, K.M., Wisniewski, J., Walczak, M.J.
PDB entry 9i8p: Human beta-cardiac myosin wild type motor domain in the pre-powerstroke state, MgADP.VO4 form
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2025-02-05
Authors: Glaser, C., Houdusse, A.
PDB entry 9i8q: Cryo-EM structure of VSV-Indiana (MUDD-SUMMERS strain) glycoprotein under its pre-fusion conformation
Classification: VIRAL PROTEIN
Source organism: Vesicular stomatitis Indiana virus strain Mudd-Summers
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-02-05
Authors: Albertini, A., Minoves, M.J., OuldAli, M., Gaudin, Y., Schoehn, G., Zarkadas, E.
PDB entry 9i8r: CP of RHDV VLP (VP1)
Classification: VIRAL PROTEIN
Source organism: Rabbit hemorrhagic disease virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-05
Authors: Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.
PDB entry 9i8u: Upregulated state of BetP with Potassium in Amphipol A8-35
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium glutamicum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2025-02-05
Authors: Urbansky, K., Fu, L., Madej, M.G., Ziegler, C.
PDB entry 9i8v: Cryo-EM structure of the Danio rerio tRNA ligase complex
Classification: LIGASE
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2025-02-06
Authors: Chamera, S., Zajko, W., Czarnocki-Cieciura, M., Jaciuk, M., Koziej, L., Nowak, J., Wycisk, K., Sroka, M., Chramiec-Glabik, A., Smietanski, M., Golebiowski, F., Warminski, M., Jemielity, J., Glatt, S., Nowotny, M.
PDB entry 9i8w: Beta-catenin armadillo with cyclic peptide and Compound 3
Classification: ONCOPROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-06
Authors: Klejnot, M., Siewko, A.N., Pastok, M.W., Gorecka-Minakowska, K.M., Wisniewski, J., Walczak, M.J.
PDB entry 9i8x: Beta-catenin armadillo with cyclic peptide and Compound 2
Classification: ONCOPROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-06
Authors: Klejnot, M., Skowron, A.N., Pastok, M.W., Gorecka-Minakowska, K.M., Wisniewski, J., Walczak, M.J.
PDB entry 9i8y: SpCas12Cas12f1 in complex with sgRNA and cognate DNA
Classification: RNA BINDING PROTEIN
Source organism: Syntrophomonas palmitatica JCM 14374; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-02-06
Authors: Sasnauskas, G., Baltramonaitis, M., Karvelis, T., Siksnys, V.
PDB entry 9i90: CP of empty RHDV virion
Classification: VIRUS
Source organism: Rabbit hemorrhagic disease virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-06
Authors: Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.
PDB entry 9i91: Ku from Mycobacterium tuberculosis bound to DNA
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-02-06
Authors: Chaplin, A.K., Zahid, S.
PDB entry 9i92: Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 1)
Classification: MEMBRANE PROTEIN
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2025-02-06
Authors: Allyjaun, S., Newman, H., Dunbar, E., Hardwick, S.W., Chirgadze, D.Y., van den Berg, B., Hubbard, J.
PDB entry 9i93: Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 2)
Classification: MEMBRANE PROTEIN
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-02-06
Authors: Allyjaun, S., Newman, H., Dunbar, E., Hardwick, S.W., Chirgadze, D.Y., van den Berg, B., Hubbard, J.
PDB entry 9i94: Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 3)
Classification: MEMBRANE PROTEIN
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-02-06
Authors: Allyjaun, S., Newman, H., Dunbar, E., Hardwick, S.W., Chirgadze, D.Y., van den Berg, B., Hubbard, J.
PDB entry 9i95: Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 4)
Classification: MEMBRANE PROTEIN
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2025-02-06
Authors: Allyjaun, S., Newman, H., Dunbar, E., Hardwick, S.W., Chirgadze, D.Y., van den Berg, B., Hubbard, J.
PDB entry 9i96: Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 5)
Classification: MEMBRANE PROTEIN
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-02-06
Authors: Allyjaun, S., Newman, H., Dunbar, E., Hardwick, S.W., Chirgadze, D.Y., van den Berg, B., Hubbard, J.
PDB entry 9i97: Cryo-EM structure of Shigella flexneri LptDE in complex with a Bicyclic Peptide binder (Compound 12)
Classification: MEMBRANE PROTEIN
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-02-06
Authors: Allyjaun, S., Dunbar, E., Hardwick, S.W., Chirgadze, D.Y., Hubbard, J., van den Berg, B., Newman, H.
PDB entry 9i98: Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 13)
Classification: MEMBRANE PROTEIN
Source organism: Shigella flexneri; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-02-06
Authors: Allyjaun, S., Newman, H., Dunbar, E., Hardwick, S.W., Chirgadze, D.Y., van den Berg, B., Hubbard, J.
PDB entry 9i99: THE COLLAGEN REPEATING SEQUENCE (PRO-PRO-GLY)10 AT AMBIENT PRESSURE AND TEMPERATURE
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-06
Authors: Prange, T., Girard, E., Colloc'h, N., Dhaussy, A.C.
PDB entry 9i9a: COLLAGEN-LIKE (PRO-PRO-GLY)10 AT 0.86 GPa HYDROSTATIC PRESSURE
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-06
Authors: Prange, T., Girard, E., Colloc'h, N., Dhaussy, A.C.
PDB entry 9i9c: CRYSTAL STRUCTURE OF HUMAN MONOACYLGLYCEROL LIPASE WITH COMPOUND 29
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2025-02-06
Authors: Walter, A., Atz, K., Stenzhorn, Y., Nippa, D., Grether, U., Kuhn, B., Martin, R., Benz, J.
PDB entry 9i9d: CP of RHDV virion (full particle)
Classification: VIRUS
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-06
Authors: Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.
PDB entry 9i9f: Crystal structure of apoform human eIF4A1 C-terminal domain
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.731 Å
Deposited: 2025-02-06
Authors: Turnbull, A.P., Schmidt, T., Bushell, M.
PDB entry 9i9g: Crystal structure of human eIF4A1 C-terminal domain in complex with hippuristanol
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-06
Authors: Turnbull, A.P., Schmidt, T., Bushell, M.
PDB entry 9i9h: Structure of FAB-fragment GB11 in complex with Sialyl Lewis A
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2025-02-06
Authors: Freitag, A., Khan-Kilji, S., Nedielkov, R., Murali Kumar, S., Krummhaar, M., Luehle, J., Goerdeler, F., Arndt, J., Kamphues, C., Mroginski, M.A., Roth, C., Seeberger, P.H., Moeller, H.M., Moscovitz, O.
PDB entry 9i9i: Cryo-EM structure of CAK-CDK11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-06
Authors: Cushing, V.I., Greber, B.J., McGeoch, A.J.S., Feng, J.
PDB entry 9i9j: Cryo-EM structure of CAK-CDK2 (determined in the presence of ADP-nitrate)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-06
Authors: Cushing, V.I., Greber, B.J., McGeoch, A.J.S., Feng, J.
PDB entry 9i9k: Cryo-EM structure of CAK-CDK2 (determined in the presence of ADP-AlFx)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-02-06
Authors: Cushing, V.I., Greber, B.J., McGeoch, A.J.S., Feng, J.
PDB entry 9i9l: Structure of Far-Red Photosystem I from C. thermalis PCC 7203
Classification: PHOTOSYNTHESIS
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.89 Å
Deposited: 2025-02-06
Authors: Consoli, G., Tufaill, F., Murray, J.W., Fantuzzi, A., Rutherford, A.W.
PDB entry 9i9m: Crystal structure of chimeric UFC1, TAK MotiF replaced with HPN motif of other E2 proteins
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.543 Å
Deposited: 2025-02-06
Authors: Manoj Kumar, P., Banerjee, S., Wiener, R.
PDB entry 9i9n: Crystal Structure of UFC1 C116E & K108A
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-02-06
Authors: Manoj Kumar, P., Banerjee, S., Weiner, R.
PDB entry 9i9o: Crystal Structure of UFC1 K108M
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.051 Å
Deposited: 2025-02-06
Authors: Manoj Kumar, P., Banerjee, S., Wiener, R.
PDB entry 9i9p: Crystal Structure of UFC1 W145H
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.022 Å
Deposited: 2025-02-06
Authors: Manoj Kumar, P., Banerjee, S., Weiner, R.
PDB entry 9i9q: Crystal structure of DNPH1 bound by compound 2.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.721 Å
Deposited: 2025-02-06
Authors: Collie, G.W.
PDB entry 9i9r: X-ray structure of the drug binding domain of AlbA in complex with the KMR-04-163 compound of the pyrrolobenzodiazepines class
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2025-02-06
Authors: Di Palma, M., Steiner, R.A.
PDB entry 9i9s: Room temperature structure of PBP2a at the LCLS
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-02-07
Authors: Grieco, A., Botha, S., Martin-Garcia, J.M.
PDB entry 9i9t: Room-temperature structure of PBP2a at EuXFEL
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-02-07
Authors: Grieco, A., Botha, S., Martin-Garcia, J.M.
PDB entry 9i9u: CARM1 in complex with arg-sDMA analog
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-07
Authors: Cura, V., Dursun, E., Troffer, N., Cavarelli, J.
PDB entry 9i9w: Crystal structure containing UGGAA/UGGAA motif interacting with NCD molecule
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.501 Å
Deposited: 2025-02-07
Authors: Mateja-Pluta, M., Kiliszek, A.
PDB entry 9i9x: Human GABARAP in complex with artificial peptide IM-2
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-02-07
Authors: Wilms, J.A., McDonald, I., Willbold, D., Kritzer, J.A., Weiergraeber, O.H.
PDB entry 9i9z: LpDE from Escherichia coli
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-02-07
Authors: Siroy, R., Fronzes, R., Ieva, R.
PDB entry 9ia0: LpDE from Escherichia coli
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-02-07
Authors: Siroy, R., Fronzes, R., Ieva, R.
PDB entry 9ia2: LpDEM from Escherichia coli
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2025-02-07
Authors: Siroy, R., Fronzes, R., Ieva, R.
PDB entry 9ia3: Bc8.108 Fab bound to preS2 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2025-02-07
Authors: Mechaly, A.E., Haouz, A., Beretta, M., Caillet-Saguy, C., Mouquet, H.
PDB entry 9ia4: Bc8.108 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2025-02-07
Authors: Mechaly, A.E., Haouz, A., Beretta, M., Caillet-Saguy, C., Mouquet, H.
PDB entry 9ia5: LpDEM from Escherichia coli
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2025-02-07
Authors: Siroy, R., Fronzes, R., Ieva, R.
PDB entry 9ia6: Crystal structure of DNPH1 bound by compound 3.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.209 Å
Deposited: 2025-02-07
Authors: Collie, G.W.
PDB entry 9ia7: NMR solution structure of RPRD2 CTD-interacting domain and pT4 RNAPII CTD peptide.
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2025-02-07
Authors: Linhartova, K., Kubicek, K., Stefl, R.
PDB entry 9ia8: Crystal Structure of UFC1 K108R
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-08
Authors: Manoj Kumar, P., Banerjee, S., Wiener, R.
PDB entry 9ia9: DtpB in complex with photocaged nitric oxide, 1.24 s, 8.05 microjoule, SSX
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces lividans 1326
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-08
Authors: Smyth, P., Williams, L.J., Hough, M.A., Worrall, J.A.R., Owen, R.L.
PDB entry 9iaa: DtpB in complex with photocaged nitric oxide, 1.24 s, 0.81 microjoule, SSX
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces lividans 1326
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-09
Authors: Smyth, P., Williams, L.J., Hough, M.A., Worrall, J.A.R., Owen, R.L.
PDB entry 9iab: Structure of the Argonaute-associated Cas4 family protein 1 (ACE1) from Chroococcidiopsis thermalis (CtACE1)
Classification: IMMUNE SYSTEM
Source organism: Chroococcidiopsis thermalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-02-09
Authors: Bobadilla Ugarte, P., Halter, S., Jinek, M., Swarts, D.C.
PDB entry 9iac: Structure of the Argonaute-associated Cas4 family protein 1 (ACE1) from Microcystis aeruginosa (MaACE1)
Classification: IMMUNE SYSTEM
Source organism: Microcystis aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2025-02-09
Authors: Bobadilla Ugarte, P., Halter, S., Jinek, M., Swarts, D.C.
PDB entry 9iad: Chroococcidiopsis thermalis Argonaute (CtAgo) bound to the 3' end of a guide DNA
Classification: IMMUNE SYSTEM
Source organism: Chroococcidiopsis thermalis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-09
Authors: Bobadilla Ugarte, P., Swarts, D.C.
PDB entry 9iae: Structure of a Chimeric Protein Composed of the SNX5 PX Domain and the N-Terminal Region of NCOA7-AS, crystal form I
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-10
Authors: Arnaud-Arnould, M., Rebendenne, A., Tauziet, M., Urbach, S., El Koulali, K., Ricci, E., Wencker, M., Moncorge, O., Blaise, M., Goujon, C.
PDB entry 9iaf: Crystal structure of Arr in complex with Rifampicin and Chr-16
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-10
Authors: Alaviuhkola, J., Abdulmajeed, S., Lehtio, L.
PDB entry 9iah: Structure of beta-lactoglobulin fibril
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-02-10
Authors: Sternke-Hoffmann, R., Rhyner, D., Qureshi, B., Riek, R., Greenwald, J., Luo, J.
PDB entry 9iaj: Structure of cyclodipeptide synthase from Nocardia brasiliensis (Nbra-CDPS) in complex with RNA microhelices mimicking tRNA-Ala acceptor arm
Classification: RNA BINDING PROTEIN
Source organism: Nocardia brasiliensis ATCC 700358; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2025-02-11
Authors: Marouf, F.Z., Charbonnier, J.B., Fernandez Varela, P.
PDB entry 9iak: Structure of cyclodipeptide synthase from Nocardia brasiliensis (Nbra-CDPS) in complex with RNA microhelices mimicking tRNA-Glu acceptor arm
Classification: RNA BINDING PROTEIN
Source organism: Nocardia brasiliensis ATCC 700358; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2025-02-11
Authors: Marouf, F.Z., Charbonnier, J.B., Fernandez Varela, P.
PDB entry 9ial: Structure of cyclodipeptide synthase from Nocardia brasiliensis (Nbra-CDPS) in complex with RNA microhelices mimicking tRNA-Glu acceptor arm
Classification: RNA BINDING PROTEIN
Source organism: Nocardia brasiliensis ATCC 700358; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.43 Å
Deposited: 2025-02-11
Authors: Marouf, F.Z., Charbonnier, J.B., Fernandez Varela, P.
PDB entry 9iam: Structure of cyclodipeptide synthase from Nocardia brasiliensis (Nbra-CDPS) in complex with alanylated RNA microhelices analogues mimicking Ala-tRNA-Ala substrate
Classification: RNA BINDING PROTEIN
Source organism: Nocardia brasiliensis ATCC 700358; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.61 Å
Deposited: 2025-02-11
Authors: Marouf, Z., Charbonnier, J.B., Fernandez Varela, P., Legrand, P.
PDB entry 9ian: Nitrogenase maturase NifEN in complex with the cofactor chaperone NifX
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.16 Å
Deposited: 2025-02-11
Authors: Schneider, F.F., Martin del Campo, J.S., Zhang, L., Dean, D.R., Einsle, O.
PDB entry 9iao: Nitrogenase maturase NifEN
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2025-02-11
Authors: Schneider, F.F., Martin del Campo, J.S., Zhang, L., Dean, D.R., Einsle, O.
PDB entry 9iap: Structure of 1 in complex with GDP-KRAS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.182 Å
Deposited: 2025-02-11
Authors: Boettcher, J.
PDB entry 9iaq: Arbitrium controls lysis-lysogeny through the activation of a small antirepressor protein in the majority of arbitrium-coding phages
Classification: DNA BINDING PROTEIN
Source organism: Bacillus phage vB_BtS_BMBtp14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.893 Å
Deposited: 2025-02-11
Authors: Marina, A., Eldar, A., Gallego, F.
PDB entry 9iar: Sulfate transporter SLC26A11 in nanodiscs with nanobody Nb11
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-11
Authors: Rasmussen, T., Kuhn, B.T., Bottcher, B., Geertsma, E.R.
PDB entry 9ias: Sulfate transporter SLC26A11 in nanodiscs with nanobody Nb4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-11
Authors: Rasmussen, T., Kuhn, B.T., Bottcher, B., Geertsma, E.R.
PDB entry 9iat: Bc8.121 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-02-11
Authors: Mechaly, A.E., Haouz, A., Beretta, M., Caillet-Saguy, C., Mouquet, H.
PDB entry 9iau: Non-immunogenic staphylokinase variant SY155
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2025-02-11
Authors: Kasiarova, L., Marek, M.
PDB entry 9iav: Non-immunogenic staphylokinase variant THR174
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.498 Å
Deposited: 2025-02-11
Authors: Kasiarova, L., Marek, M.
PDB entry 9iaw: Structure of 5 in complex with GDP-KRAS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.997 Å
Deposited: 2025-02-11
Authors: Boettcher, J.
PDB entry 9iax: DNA-PK, LX4, XLF - Catalytic domain of L4
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2025-02-11
Authors: Chaplin, A.K., Hall, C.
PDB entry 9iay: Structure of 10 in complex with GDP-KRAS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.953 Å
Deposited: 2025-02-11
Authors: Boettcher, J.
PDB entry 9iaz: CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256, local refinement
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-11
Authors: Clancy, D.M., Felix, J., Bloch, Y., Savvides, S.N.
PDB entry 9ib0: Cryo-EM consensus map of prefusion SARS-CoV-2 spike (RBDs: 1 up & 2 down) bound to RBD-targeting MO176-117 antibody
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-11
Authors: Schulte, T., Wallden, W., Andrell, J., Ohlin, M.
PDB entry 9ib1: Cryo-EM focus map of prefusion SARS-CoV-2 spike (RBDs: 1 up & 2 down) bound to RBD-targeting MO176-117 antibody
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-11
Authors: Schulte, T., Wallden, W., Andrell, J., Ohlin, M.
PDB entry 9ib2: Cryo-EM consensus map of prefusion SARS-CoV-2 spike (RBDs: 2 up & 1 down) bound to RBD-targeting MO176-117 antibody
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-11
Authors: Schulte, T., Wallden, W., Andrell, J., Ohlin, M.
PDB entry 9ib3: Cryo-EM focus map of prefusion SARS-CoV-2 spike (RBDs: 2 up & 1 down) bound to RBD-targeting MO176-117 antibody
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-11
Authors: Schulte, T., Wallden, W., Andrell, J., Ohlin, M.
PDB entry 9ib4: Structure of 12 in complex with GDP-KRAS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.062 Å
Deposited: 2025-02-11
Authors: Boettcher, J.
PDB entry 9ib5: Structure of 18 (BI-2493) in complex with GDP-KRAS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.011 Å
Deposited: 2025-02-11
Authors: Boettcher, J.
PDB entry 9ib6: Apo form of Tumor necrosis factor-like lectin PLTL from Photorhabdus laumondii
Classification: SUGAR BINDING PROTEIN
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-02-11
Authors: Melicher, F., Wimmerova, M.
PDB entry 9ib7: Tumor necrosis factor-like lectin PLTL from Photorhabdus laumondii in complex with Blood group B trisaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-11
Authors: Melicher, F., Wimmerova, M.
PDB entry 9ib8: Tumor necrosis factor-like lectin PLTL from Photorhabdus laumondii in complex with Lewis Y tetrasaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-11
Authors: Melicher, F., Wimmerova, M.
PDB entry 9ib9: Tumor necrosis factor-like lectin PLTL from Photorhabdus laumondii in complex with B Lewis b pentasaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-02-11
Authors: Melicher, F., Wimmerova, M.
PDB entry 9iba: Crystal structure of Arr-2 in complex with Rifampicin
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-02-12
Authors: Alaviuhkola, J., Abdulmajeed, S., Lehtio, L.
PDB entry 9ibb: Rhombohedral crystalline form of human insulin complexed with m-cresol
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-02-12
Authors: Papaefthymiou, C., Nanao, M.H., Margiolaki, I., Kontarinis, A., Kafetzi, S., Konstantopoulos, M., Koutoulas, D.
PDB entry 9ibe: D-2-hydroxyacid dehydrogenase (D2HDH) from Haloferax mediterranei in complex with potassium, 2-ketohexanoic acid, NADP+ and chloride
Classification: OXIDOREDUCTASE
Source organism: Haloferax mediterranei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2025-02-12
Authors: Baker, P.J., Barrett, J.R., Dakhil, A.A.A.B., Domenech, J., Bisson, C., Pramanpol, N., Ferrer, J., Rice, D.W.
PDB entry 9ibh: Salmonella typhimurium polynucleotide phosphorylase in complex with recognition site of RNase E
Classification: RNA BINDING PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-02-12
Authors: Paris, G., Luisi, B.F.
PDB entry 9ibi: Solution NMR study of the titin I-band IgI domain I82 reveals conformational dynamics
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2025-02-12
Authors: Pfuhl, M., Gage, M.
PDB entry 9ibk: Solution NMR study of the titin I-band IgI domain I82 reveals conformational dynamics
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2025-02-12
Authors: Pfuhl, M., Gage, M.
PDB entry 9ibl: PhiC31 integrative synapse: attB x attP with an S12A integrase variant
Classification: DNA BINDING PROTEIN
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.21 Å
Deposited: 2025-02-12
Authors: Spagnolo, L., Sun, Y.E., Joseph, A.P.
PDB entry 9ibn: Crystal structure of the peptidyl-prolyl isomerase (PPIase) from E. faecium
Classification: ISOMERASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2025-02-12
Authors: Napolitano, V., Kramarska, E., Berisio, R.
PDB entry 9ibo: VC0430/VcGluP bound to glutamate
Classification: TRANSPORT PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-02-13
Authors: Jimmy, S., Sondermann, H.
PDB entry 9ibp: VCA0144 from Vibrio cholerae
Classification: TRANSPORT PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-13
Authors: Jimmy, S., Sondermann, H.
PDB entry 9ibq: Structure of BstEII with DNA substrate
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-02-13
Authors: Rety, S., Xi, X.G.
PDB entry 9ibr: Crystal structure of HNF4 alpha LBD complexed with GRIP-1 peptide and ESY13
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2025-02-13
Authors: Morozov, V., Merk, D., Schallmayer, A.
PDB entry 9ibs: Cryo-EM Structure of Self-assembled Zymomonas mobilis Levansucrase Nanotube
Classification: TRANSFERASE
Source organism: Zymomonas mobilis subsp. mobilis ATCC 10988
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-02-13
Authors: Yu, Y., Sonani, R.R., Hadad, N., Salama, R., Shoham, G., Egelman, E., Shoham, Y., Danino, D.