LiteFold/PDB huggingface dataset:
PDB entry 9cew: Spizellomyces punctatus Fanzor (SpuFz) State 3
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Spizellomyces punctatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cex: Spizellomyces punctatus Fanzor (SpuFz) State 4
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Spizellomyces punctatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cey: Spizellomyces punctatus Fanzor (SpuFz) State 5
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Spizellomyces punctatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cez: Spizellomyces punctatus Fanzor (SpuFz) State 6
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Spizellomyces punctatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cf0: Parasitella parasitica Fanzor (PpFz) State 1
Classification: RNA BINDING PROTEIN/ISOMERASE/DNA
Source organism: Parasitella parasitica; Saccharomyces cerevisiae; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cf1: Parasitella parasitica Fanzor (PpFz) State 2
Classification: RNA BINDING PROTEIN/ISOMERASE/RNA/DNA
Source organism: Parasitella parasitica; Saccharomyces cerevisiae; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cf2: Parasitella parasitica Fanzor (PpFz) State 3
Classification: RNA BINDING PROTEIN/ISOMERASE/RNA/DNA
Source organism: Parasitella parasitica; Saccharomyces cerevisiae; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cf3: Parasitella parasitica Fanzor (PpFz) State 4
Classification: RNA BINDING PROTEIN/ISOMERASE/RNA/DNA
Source organism: Parasitella parasitica; Saccharomyces cerevisiae; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cf4: Crystal structure of the dimeric transaminase DoeD from C. salexigens DSM 3043.
Classification: TRANSFERASE
Source organism: Chromohalobacter israelensis DSM 3043
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2024-06-27
Authors: Skogvold, A.C., Brakestad, H.T., Erlandsen, H., Leiros, I.
PDB entry 9cf5: STRUCTURE OF CD4 MIMETIC CJF-III-288 IN COMPLEX WITH BG505 SOSIP.664 HIV-1ENV TRIMER AND 17B FAB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-06-27
Authors: Niu, L., Tolbert, W.D., Pazgier, M.
PDB entry 9cf6: Germline-targeting HIV-1 gp120 engineered outer domain eODgt8 in complex with Fab eOD-CL02.1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-06-27
Authors: Sarkar, A., Stanfield, R.L., Wilson, I.A.
PDB entry 9cf7: Germline-targeting HIV-1 gp120 engineered outer domain eODgt8 in complex with Fab eOD-PL01.1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2024-06-27
Authors: Sarkar, A., Stanfield, R.L., Wilson, I.A.
PDB entry 9cf8: Cryo-EM structure of human kidney V-ATPase state 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-06-27
Authors: Zhang, Z., Lyu, M.
PDB entry 9cf9: SARS-CoV-2 3CL Protease complexed with covalent inhibitor BC787
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-06-27
Authors: Hoffpauir, Z.A., Meneely, K.M., Lamb, A.L.
PDB entry 9cfa: Germline-targeting HIV-1 gp120 engineered outer domain eODgt8 in complex with Fab eOD-CL04.1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2024-06-27
Authors: Sarkar, A., Stanfield, R.L., Wilson, I.A.
PDB entry 9cfb: SARS-CoV-2 3CL Protease complexed with covalent inhibitor BC674
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-06-27
Authors: Hoffpauir, Z.A., Meneely, K.M., Lamb, A.L.
PDB entry 9cfc: Cryo-EM structure of human kidney V-ATPase state 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-06-27
Authors: Zhang, Z., Lyu, M.
PDB entry 9cfd: Fab 8C1 in complex with OspCA peptide P15 (residues 132-146)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-06-27
Authors: Rudolph, M.J., Mantis, N.
PDB entry 9cfe: Cryo-EM Local Refinement of Antibody 19-77 in complex with prefusion SARS-CoV-2 Spike glycoprotein RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-06-27
Authors: Casner, R.G., Shapiro, L.
PDB entry 9cff: Cryo-EM Refinement of Antibody 19-77 in complex with SARS-CoV-2 HK.3 RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-06-27
Authors: Casner, R.G., Shapiro, L.
PDB entry 9cfg: Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 HK.3 RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-06-27
Authors: Casner, R.G., Shapiro, L.
PDB entry 9cfh: Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 JD.1.1 RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-27
Authors: Casner, R.G., Shapiro, L.
PDB entry 9cfi: Human DJ-1, 3 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-06-27
Authors: Zielinski, K.A., Dolamore, C., Dalton, K., Meisburger, S.P., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cfj: Fluvirucin Thioesterase Domain (FluC TE)
Classification: HYDROLASE
Source organism: Actinomadura vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2024-06-27
Authors: Choudhary, V., Smith, J.L.
PDB entry 9cfl: Cryo-EM structure of S. aureus TarGH in complex with ATP-gamma-S
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-06-27
Authors: Li, F.K.K., Worrall, L.J., Strynadka, N.C.J.
PDB entry 9cfm: Human DJ-1, 5 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-06-27
Authors: Zielinski, K.A., Dolamore, C., Dalton, K., Meisburger, S.P., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cfn: Crystal structure of an exoribonuclease-resistant RNA from a Tombusvirus-like associated RNA
Classification: RNA
Source organism: Beet western yellows ST9 associated virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-06-27
Authors: Gezelle, J., Wimberly, B., Gong, Z., Steckelberg, A.L.
PDB entry 9cfo: Human DJ-1, 10 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-06-27
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S.P., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cfp: Cryo-EM structure of S. aureus TarGH in complex with AMP-PNP and targocil-II
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-06-27
Authors: Peters, S.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 9cfq: Human DJ-1, no mixing, pink beam time-resolved serial crystallography, CrystFEL processed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-06-27
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cfs: Structure of a 150% lengthened variant of the E. coli ROP protein
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-06-27
Authors: Gallagher, D.T., Shakya, A.
PDB entry 9cft: Adeno-associated virus serotype 6 basic regions in complex with importin alpha 2
Classification: TRANSPORT PROTEIN
Source organism: Adeno-associated virus - 6; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-06-27
Authors: Hoad, M., Forwood, J.K.
PDB entry 9cfu: Cryo-EM structure of myosin-1c bound to F-actin in the ADP-A state
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-06-27
Authors: Chavali, S.S., Sindelar, C.V., Ostap, M.E.
PDB entry 9cfv: Cryo-EM structure of delta-NTR myosin-1c bound to F-actin
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-06-27
Authors: Chavali, S.S., Sindelar, C.V., Ostap, M.E.
PDB entry 9cfw: Cryo-EM structure of myosin-1c bound to F-actin in the ADP-B state
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-06-27
Authors: Chavali, S.S., Sindelar, C.V., Ostap, M.E.
PDB entry 9cfx: Cryo-EM structure of myosin-1c bound to F-actin in the Rigor state
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-06-27
Authors: Chavali, S.S., Sindelar, C.V., Ostap, M.E.
PDB entry 9cfy: Human DJ-1, 15 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-06-27
Authors: Zielinski, K.A., Dolamore, C., Dalton, K., Meisburger, S.P., Smith, N., Termini, T., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cfz: Human DJ-1, 20 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-06-27
Authors: Zielinski, K.A., Dolamore, C., Dalton, K., Meisburger, S.P., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cg0: Human DJ-1, 30 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-06-28
Authors: Zielinski, K.A., Dolamore, C., Dalton, K., Meisburger, S.P., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cg1: DUF512 protein from Clostridium sporogenes
Classification: OXIDOREDUCTASE
Source organism: Clostridium sporogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-06-28
Authors: Wang, B., Radle, M.I., Peduzzi, O., Solinski, A., Knox, H.L., Cui, J., Maurya, R., Yennawar, N., Booker, S.J.
PDB entry 9cg2: DUF512 protein from Pyrococcus furiosus
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-06-28
Authors: Wang, B., Radle, M.I., Peduzzi, O., Solinski, A., Knox, H.L., Cui, J., Maurya, R., Yennawar, N., Booker, S.J.
PDB entry 9cg3: Human kidney respiratory complex III
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-06-28
Authors: Zhang, Z., Lyu, M.
PDB entry 9cg4: Cryo-EM structure of FAN1, PCNA and DNA substrate with (CAG)2 extrusion in intermediate state
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-06-28
Authors: Li, F., Pluciennik, A.
PDB entry 9cg5: 70S initiation complex (tRNA-fMet M1 + UUG start codon)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-06-28
Authors: Mattingly, J.M., Nguyen, H.A., Dunham, C.M.
PDB entry 9cg6: 70S initiation complex (tRNA-fMet M1 + GUG start codon)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-06-28
Authors: Mattingly, J.M., Nguyen, H.A., Dunham, C.M.
PDB entry 9cg7: 70S initiation complex (tRNA-fMet M1 + AUG start codon)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-06-28
Authors: Mattingly, J.M., Nguyen, H.A., Dunham, C.M.
PDB entry 9cg8: CRYSTAL STRUCTURE OF THE P285S VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR FORREST
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-06-28
Authors: Beamer, L.J., Samarakoon, V., Owuocha, L.F.
PDB entry 9cg9: Cryo-EM structure of an HMGB1 box bound to nucleosome at SHL-2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-06-28
Authors: Chio, U.S., Saunders, H.S., Narlikar, G.J., Cheng, Y.
PDB entry 9cga: Human DJ-1, 3 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography, CrystFEL processed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-06-28
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cgb: Human DJ-1, 5 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography, CrystFEL processed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-06-28
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cgc: Yeast 26S proteasome non-substrate-engaged (S1 state)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2024-06-28
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9cgd: Human DJ-1, 10 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography, CrystFEL processed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-06-28
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cge: Human DJ-1, 15 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography, CrystFEL processed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-06-28
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cgf: Human DJ-1, 20 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography, CrystFEL processed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2024-06-28
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cgg: Human DJ-1, 30 sec mixing with methylglyoxal, pink beam time-resolved serial crystallography, CrystFEL processed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-06-28
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cgh: Photoactive yellow protein crystallized in situ on cyclic olefin copolymer microfluidic chip through counter diffusion
Classification: PHOTOSYNTHESIS
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-06-28
Authors: Liu, Z., Gu, K.K., Shelby, M.L., Roy, D., Muniyappan, S., Schmidt, M., Narayanasamy, S.R., Coleman, M.A., Frank, M., Kuhl, T.L.
PDB entry 9cgi: Cryo-EM structure of the Nipah Virus polymerase (L) protein in complex with the tetrameric phosphoprotein (P)
Classification: TRANSFERASE, VIRAL PROTEIN
Source organism: Henipavirus nipahense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-06-29
Authors: Liu, B., Yang, G., Wang, D.
PDB entry 9cgj: CryoEM structure of delta opioid receptor bound to G proteins and a partial agonist
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-06-29
Authors: Fay, J.F., Che, T.
PDB entry 9cgk: CryoEM structure of delta opioid receptor bound to G proteins and a full bitopic agonist
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-06-29
Authors: Fay, J.F., Che, T.
PDB entry 9cgl: Pikromycin Thioesterase Doubly Protected DAP
Classification: HYDROLASE
Source organism: Streptomyces venezuelae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-06-29
Authors: McCullough, T.M., Smith, J.L.
PDB entry 9cgm: The Structure of Spiroplasma Virus 4
Classification: VIRUS
Source organism: Spiromicrovirus SpV4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2024-06-30
Authors: Mietzsch, M., McKenna, R.
PDB entry 9cgn: Pikromycin Thioesterase with heptaketide adduct
Classification: HYDROLASE
Source organism: Streptomyces venezuelae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-06-30
Authors: Smith, J.L., Choudhary, V.
PDB entry 9cgo: Tylosin thioesterase domain (TylG5 TE)
Classification: HYDROLASE
Source organism: Streptomyces fradiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-06-30
Authors: Smith, J.L., Choudhary, V.
PDB entry 9cgp: RyR1 disease mutant Y523S with FKBP12.6, nanodisc and inhibitor dantrolene in the absence of calcium with refined P1 domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2024-06-30
Authors: Iyer, K.A., Samso, M.
PDB entry 9cgq: Rabbit RyR1 disease mutant Y523S in complex with FKBP12.6, nanodisc and inhibitor dantrolene in the presence of activating calcium
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-06-30
Authors: Iyer, K.A., Samso, M.
PDB entry 9cgr: Structure of human MAIT A-F7 TCR in complex with human MR1-Pyridoxal
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-06-30
Authors: Awad, W., Rossjohn, R.
PDB entry 9cgs: Structure of human MAIT A-F7 TCR in complex with human MR1-Pyridoxal-5'-phosphate
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-06-30
Authors: Awad, W., Rossjohn, R.
PDB entry 9cgt: STRUCTURE OF CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED WITH A THIO-MALTOPENTAOSE
Classification: TRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1998-09-27
Authors: Schmidt, A.K., Schulz, G.E.
PDB entry 9cgu: Cas9 ternary complex, 14-nt sgRNA, State II (kinked)
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-07-01
Authors: Kiernan, K.A., Simonovic, M.
PDB entry 9cgv: SARS-CoV-2 nsp12 NiRAN domain bound to a covalent inhibitor SW090466-1
Classification: VIRAL PROTEIN/RNA/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-07-01
Authors: Osinski, A., Hernandez, G., Tagliabracci, V.S.
PDB entry 9cgw: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-I65W) heteromeric complex (no cofactor)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9cgx: Alzheimer's Disease Seeded 0N3R Tau Fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-07-01
Authors: Duan, P., Dregni, A.J., Xu, H., Changolkar, L., Lee, V.M.-Y., Hong, M.
PDB entry 9cgy: Structure of the Pel modification enzyme PelA from Pseudomonas thermotolerans
Classification: HYDROLASE
Source organism: Pseudomonas thermotolerans DSM 14292
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-07-01
Authors: Van Loon, J.C., Pfoh, R., Howell, P.L.
PDB entry 9cgz: Alzheimer's Disease Seeded Mixed 0N4R and 0N3R Tau Fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2024-07-01
Authors: Duan, P., Dregni, A.J., Xu, H., Changolkar, L., Lee, V.M.-Y., Hong, M.
PDB entry 9ch0: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-I65W) heteromeric complex (bound to SAH)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9ch1: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-I65W) heteromeric complex (bound to SAM)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9ch2: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-L63D) heteromeric complex
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9ch3: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-L63D) heteromeric complex (bound to SAH)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9ch4: Crystal structure of shark nonclassical MHC CLASS I, UGA
Classification: IMMUNE SYSTEM
Source organism: Ginglymostoma cirratum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2024-07-01
Authors: Castro, C.D., Adams, E.J.
PDB entry 9ch5: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-L63D) heteromeric complex (bound to SAM)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9ch7: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-Y62A) heteromeric complex (bound to SAH - structure 1)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9chi: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-Y62A) heteromeric complex (bound to SAH - structure 2)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis MR-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9chk: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA-Y62A) heteromeric complex (bound to SAM)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-07-01
Authors: Crone, K.K., Labonte, J.W., Elias, M., Freeman, M.F.
PDB entry 9chl: P. vulgaris tetrameric HigBA- operator 2 DNA
Classification: ANTITOXIN/DNA BINDING PROTEIN/DNA
Source organism: Proteus vulgaris; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-07-01
Authors: Pavelich, I.J., Schureck, M.A., Hoffer, E.D., Dunham, C.M.
PDB entry 9chm: Cryo-EM structure of FAN1 R507H and PCNA in intermediate state
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-07-01
Authors: Li, F., Pluciennik, A.
PDB entry 9chn: P. vulgaris trimeric HigBA- operator 2 DNA
Classification: ANTITOXIN/DNA BINDING PROTEIN/DNA
Source organism: Proteus vulgaris; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-07-01
Authors: Pavelich, I.J., Schureck, M.A., Hoffer, E.D., Dunham, C.M.
PDB entry 9cho: Autoinhibited full-length LRRK2(I2020T) on microtubules with MLi-2
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.8 Å
Deposited: 2024-07-01
Authors: Chen, S., Villa, E., Leschziner, A.E.
PDB entry 9chp: Cryo-EM structure of the human ether-a-go-go related K+ channel (hERG) in 300 mM K+
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-07-01
Authors: Lau, C.H.Y., Hunter, M.J., Vandenberg, J.I.
PDB entry 9chq: Cryo-EM structure of the human ether-a-go-go related K+ channel (hERG) in 3 mM K+
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-07-01
Authors: Lau, C.H.Y., Hunter, M.J., Vandenberg, J.I.
PDB entry 9chr: Cryo-EM structure of the human ether-a-go-go related K+ channel (hERG) in 300 mM K+ without symmetry
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-07-01
Authors: Lau, C.H.Y., Hunter, M.J., Vandenberg, J.I.
PDB entry 9chs: Cryo-EM structure of the human ether-a-go-go related K+ channel (hERG) in 3 mM K+ without symmetry
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-07-01
Authors: Lau, C.H.Y., Hunter, M.J., Vandenberg, J.I.
PDB entry 9cht: Human E3 ligase E6AP in complex with HPV16-E6 and p53
Classification: LIGASE
Source organism: Homo sapiens; Human papillomavirus 16; Streptococcus sp. group G
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2024-07-02
Authors: Kenny, S., Das, C.
PDB entry 9chu: Cryo-EM structure of calcineurin fused beta2 adrenergic receptor in norepinephrine bound inactive state
Classification: MEMBRANE PROTEIN/HYDROLASE/ISOMERASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-07-02
Authors: Xu, J., Chen, G., Du, Y., Kobilka, B.K.
PDB entry 9chv: cryo-EM structure of calcineurin-fused beta2 adrenergic receptor in apo state
Classification: MEMBRANE PROTEIN/HYDROLASE/ISOMERASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2024-07-02
Authors: Xu, J., Chen, G., Du, Y., Kobilka, B.K.
PDB entry 9chw: Crystal structure of human polymerase eta with incoming dAMPnPP nucleotide opposite threofuranosyl thymidine in DNA template
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2024-07-02
Authors: Tomar, R., Stone, M.P., Egli, M.
PDB entry 9chx: cryo-EM structure of calcineurin-fused beta2 adrenergic receptor in carazolol bound inactive state
Classification: MEMBRANE PROTEIN/HYDROLASE/ISOMERASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-07-02
Authors: Xu, J., Chen, G., Du, Y., Kobilka, B.K.
PDB entry 9chy: Crystal structure of the human MESH1 (D66K)-PAPS complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-07-02
Authors: Rose, J., Zhou, P.
PDB entry 9chz: Anthoceros agrestis Rubisco assembled with Raf1 Raf2 and BSD2
Classification: PHOTOSYNTHESIS
Source organism: Anthoceros agrestis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-07-02
Authors: Ang, W.S.L., Oh, Z.G., Li, F.W., Gunn, L.H.
PDB entry 9ci1: Anthoceros agrestis Rubisco octamer core complexed with Arabidopsis thaliana BSD2
Classification: PHOTOSYNTHESIS
Source organism: Anthoceros agrestis; Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-07-02
Authors: Ang, W.S.L., Oh, Z.G., Li, F.W., Gunn, L.H.
PDB entry 9ci2: Anthoceros agrestis Rubisco octamer core complexed with small subunits and Arabidopsis thaliana BSD2
Classification: PHOTOSYNTHESIS
Source organism: Anthoceros agrestis; Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-07-02
Authors: Ang, W.S.L., Oh, Z.G., Li, F.W., Gunn, L.H.
PDB entry 9ci3: Structure of the LRRK2/14-3-3 complex
Classification: TRANSFERASE/SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2024-07-02
Authors: Martinez Fiesco, J.A., Zhang, P.
PDB entry 9ci4: Crystal structure of Fe/2-OG dependent dioxygenase MysH (Apo form)
Classification: METAL BINDING PROTEIN
Source organism: Nostoc linckia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-07-02
Authors: Wanniarachchi, T.N., Bruner, S.D.
PDB entry 9ci7: Structure of PNUTS:Tox4 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-07-02
Authors: Page, R., Peti, W., Wang, X.
PDB entry 9ci8: T cell receptor complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-07-02
Authors: Gully, B.S., Rossjohn, J.
PDB entry 9ci9: Crystal structure of human polymerase eta with incoming dCMPnPP nucleotide across threofuranosyl thymidine in DNA template at extension stage
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-07-02
Authors: Tomar, R., Stone, M.P., Egli, M.
PDB entry 9cia: T cell receptor complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-07-03
Authors: Gully, B.S., Rossjohn, J.
PDB entry 9cib: CryoEM Structure of HCA2 DREADD Gi1 in complex with FCH-2296413 (Local Refinement)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-07-03
Authors: Krumm, B.E., Kang, H.J., Diberto, J.F., Kapolka, N.J., Gumpper, R.H., Olsen, R.H.J., Huang, X.P., Zhang, S., Fay, J.F., Roth, B.L.
PDB entry 9cic: Solution NMR structure of calcium-bound I89, a dynamic engineered protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2024-07-03
Authors: Guo, A.B., Kelly, M.J.S., Kortemme, T.
PDB entry 9cid: Solution NMR structure of apo I89, a dynamic engineered calcium-binding protein (state 2)
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2024-07-03
Authors: Guo, A.B., Kelly, M.J.S., Kortemme, T.
PDB entry 9cie: Solution NMR structure of S89, a dynamic engineered calcium-binding protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2024-07-03
Authors: Guo, A.B., Kortemme, T., Kelly, M.J.S.
PDB entry 9cif: Solution NMR structure of a single-state de novo alternative conformation (design 6306) of the N-terminal domain of chicken troponin C (E41A mutant)
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2024-07-03
Authors: Guo, A.B., Kelly, M.J.S., Kortemme, T.
PDB entry 9cig: Solution NMR structure of apo I89, a dynamic engineered calcium-binding protein (state 1)
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2024-07-03
Authors: Guo, A.B., Kelly, M.J.S., Kortemme, T.
PDB entry 9cih: Crystal structure of human polymerase eta with incoming dCMPnPP nucleotide across O4-methyl threofuranosyl thymidine in DNA template at extension stage
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-07-03
Authors: Tomar, R., Stone, M.P., Egli, M.
PDB entry 9cii: Crystal structure of Staphylococcal nuclease variant Delta+PHS V23D/L36R at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-07-03
Authors: Zhang, Y., Schlessman, J.L., Robinson, A.C., Garcia-Moreno E., B.
PDB entry 9cij: Crystal structure of Staphylococcal nuclease variant Delta+PHS V23E/L36R at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-07-03
Authors: Zhang, Y., Schlessman, L.J., Siegler, M.A., Garcia-Moreno E., B.
PDB entry 9cik: Crystal structure of Staphylococcal nuclease variant Delta+PHS V23R/L36D at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-07-03
Authors: Zhang, Y., Schlessman, J.L., SIegler, M.A., Garcia-Moreno E., B.
PDB entry 9cil: Crystal structure of Staphylococcal nuclease variant Delta+PHS T41V/S59A at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-07-03
Authors: Zhang, Y., Schlessman, J.L., Siegler, M.A., Garcia-Moreno E., B.
PDB entry 9cin: Fab fragment of Antibody with NiV glycoprotein F
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Henipavirus nipahense; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-07-03
Authors: Ouizougun-Oubari, M., Bajic, G.
PDB entry 9cip: MicroED structure of the C11 cysteine protease clostripain
Classification: HYDROLASE
Source organism: Hathewaya histolytica
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2024-07-03
Authors: Ruma, Y.N., Bu, G., Hattne, J., Gonen, T.
PDB entry 9ciq: Crystal structure of human polymerase eta with incoming threofuranosyl thymine nucleoside triphosphate opposite template dA
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-07-04
Authors: Patra, A., Tomar, R., Stone, M.P., Egli, M.
PDB entry 9cir: Crystal structure of pyrophosphate-dependent phosphofructokinase from Candidatus Prometheoarchaeum syntrophicum
Classification: TRANSFERASE
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-07-04
Authors: Compton, J.A., Yosaatmadja, Y., Bashiri, G., Vickers, C.J., Patrick, W.M.
PDB entry 9cis: Crystal structure of the pyrophosphate-dependent phosphofructokinase from Candidatus Prometheoarchaeum syntrophicum with fructose 6-phosphate
Classification: TRANSFERASE
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-07-04
Authors: Compton, J.A., Yosaatmadja, Y., Bashiri, G., Vickers, C.J., Patrick, W.M.
PDB entry 9cit: Crystal structure of pyrophosphate-dependent phosphofructokinase from Candidatus Prometheoarchaeum syntrophicum with phosphoenolpyruvate, phosphate and Mg2+
Classification: TRANSFERASE
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2024-07-04
Authors: Compton, J.A., Yosaatmadja, Y., Bashiri, G., Vickers, C.J., Patrick, W.M.
PDB entry 9civ: X-Ray Structure of Insulin Analog DETEMIR
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-07-05
Authors: Garcia Medina, Y.S., Reyes-Grajeda, J.P.
PDB entry 9ciw: Penguinpox cGAMP PDE H72A mutant in complex with 2'3'-cGAMP
Classification: VIRAL PROTEIN
Source organism: Penguinpox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-07-05
Authors: Hobbs, S.J., Nomburg, J., Doudna, J.A., Kranzusch, P.J.
PDB entry 9ciy: Right-left hybrid parallel G-quadruplex from NSD1 promoter
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-07-05
Authors: Xing, E.R., Yatsunyk, L.A.
PDB entry 9cj0: The High-Resolution Structure of a Variable Lymphocyte Receptor from Petromyzon marinus Capable of Binding to the Brain Extracellular Matrix
Classification: IMMUNE SYSTEM
Source organism: Petromyzon marinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-07-05
Authors: Appelt, E.A., Thoden, J.B., Shusta, E.V., Holden, H.M.
PDB entry 9cj1: Dual phosphorylated human p38 alpha bound to nilotinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-07-05
Authors: Stadnicki, E.J., Ludewig, H., Prem Kumar, R., Kern, D., Bradshaw, N.
PDB entry 9cj2: Dual phosphorylated human p38 alpha
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2024-07-05
Authors: Stadnicki, E.J., Ludewig, H., Prem Kumar, R., Kern, D., Bradshaw, N.
PDB entry 9cj3: Dual phosphorylated human p38 alpha bound to pexmetinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-07-05
Authors: Stadnicki, E.J., Ludewig, H., Prem Kumar, R., Kern, D., Bradshaw, N.
PDB entry 9cj4: Dual phosphorylated human p38 alpha bound to BIRB796
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-07-05
Authors: Stadnicki, E.J., Ludewig, H., Prem Kumar, R., Kern, D., Bradshaw, N.
PDB entry 9cj5: Unphosphorylated human p38 alpha bound to pexmetinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-07-05
Authors: Stadnicki, E.J., Ludewig, H., Prem Kumar, R., Kern, D., Bradshaw, N.
PDB entry 9cj6: Crystal Structure of SARS-CoV-2 N-NTD with part of N-arm complex with ssDNA.
Classification: VIRAL PROTEIN/DNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-07-05
Authors: Maiti, A., Matsuo, H.
PDB entry 9cj7: Lineage IV Lassa virus glycoprotein (Josiah) in complex with monoclonal antibody 8.9F
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lassa virus Josiah
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-07-05
Authors: Brouwer, P.J.M., Perrett, H.R., Ward, A.B.
PDB entry 9cj8: Lineage IV Lassa virus glycoprotein (Josiah) in complex with rabbit polyclonal antibody (LAVA01-like epitope)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lassa virus Josiah; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-07-05
Authors: Brouwer, P.J.M., Perrett, H.R., Ward, A.B.
PDB entry 9cj9: Crystal structure of human polymerase eta with incoming dAMPnPP nucleotide opposite O4-methyl threofuranosyl thymidine in DNA template at insertion stage
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2024-07-05
Authors: Tomar, R., Stone, M.P., Egli, M.
PDB entry 9cja: Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure
Classification: METAL BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-07-05
Authors: Rua, A.J., Alexandrescu, A.T.
PDB entry 9cjb: CryoEM structure of nitrogenase MoFe-protein 60 minute time point under alkaline turnover
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.97 Å
Deposited: 2024-07-05
Authors: Warmack, R.A., Rees, D.C.
PDB entry 9cjc: CryoEM structure of nitrogenase MoFe-protein 20 minute time point under alkaline turnover
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2024-07-05
Authors: Warmack, R.A., Rees, D.C.
PDB entry 9cjd: CryoEM structure of nitrogenase MoFe-protein 5 minute time point under alkaline turnover
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.92 Å
Deposited: 2024-07-05
Authors: Warmack, R.A., Rees, D.C.
PDB entry 9cje: CryoEM structure of nitrogenase MoFe-protein 20 second time point under alkaline turnover
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.22 Å
Deposited: 2024-07-05
Authors: Warmack, R.A., Rees, D.C.
PDB entry 9cjf: CryoEM structure of alkaline-inactivated nitrogenase MoFe-protein in complex with NafT
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2024-07-05
Authors: Warmack, R.A., Rees, D.C.
PDB entry 9cjg: P450-G9 from Actinokineospora terrae, a non-canonical, serine-ligated cytochrome P450 in the ligand-free, closed conformation
Classification: OXIDOREDUCTASE
Source organism: Actinokineospora terrae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-07-06
Authors: Ireland, K.A., Davis, K.M.
PDB entry 9cjh: Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 1
Classification: HYDROLASE/RNA/DNA
Source organism: Acidaminococcus sp. BV3L6; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-07-06
Authors: Soczek, K.M., Doudna, J.A.
PDB entry 9cji: Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 2
Classification: HYDROLASE/RNA/DNA
Source organism: Acidaminococcus sp. BV3L6; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-07-06
Authors: Soczek, K.M., Doudna, J.A.
PDB entry 9cjj: Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 3
Classification: HYDROLASE/RNA/DNA
Source organism: Acidaminococcus sp. BV3L6; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-07-06
Authors: Soczek, K.M., Doudna, J.A.
PDB entry 9cjk: Human TMED9 octamer structure
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-07-06
Authors: Le, X., Xiong, P.
PDB entry 9cjl: Molecular basis of TMED9 dodecamer
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2024-07-06
Authors: Le, X., Xiong, P.
PDB entry 9cjm: Red fluorescent protein mRuby3
Classification: FLUORESCENT PROTEIN
Source organism: Entacmaea quadricolor
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-07-07
Authors: Huang, M., Ng, H.L., Geisbrecht, B.V., Duan, H., Deng, M., Chu, J.
PDB entry 9cjn: Ligase Cp1B
Classification: LIGASE
Source organism: Aspergillus flavus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-07-07
Authors: Xin, Z., Yi, T.
PDB entry 9cjo: X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-07-07
Authors: Esler, M.A., Shi, K., Harris, R.S., Aihara, H.
PDB entry 9cjp: X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Nirmatrelvir
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-07-07
Authors: Esler, M.A., Shi, K., Harris, R.S., Aihara, H.
PDB entry 9cjq: X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Ensitrelvir
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2024-07-07
Authors: Esler, M.A., Shi, K., Harris, R.S., Aihara, H.
PDB entry 9cjr: X-ray crystal structure of SARS-CoV-2 main protease double mutants in complex with Ensitrelvir
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-07-07
Authors: Esler, M.A., Shi, K., Harris, R.S., Aihara, H.
PDB entry 9cjs: X-ray crystal structure of SARS-CoV-2 main protease triple mutants in complex with Bofutrelvir
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-07-07
Authors: Esler, M.A., Shi, K., Harris, R.S., Aihara, H.
PDB entry 9cjt: X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Bofutrelvir
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-07-07
Authors: Esler, M.A., Shi, K., Harris, R.S., Aihara, H.