LiteFold/PDB huggingface dataset:
PDB entry 8rdr: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8g
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-12-08
Authors: Bischof, L., Hartmann, M.D.
PDB entry 8rds: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8i
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-08
Authors: Bischof, L., Hartmann, M.D.
PDB entry 8rdt: Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8j
Classification: SIGNALING PROTEIN
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-08
Authors: Bischof, L., Hartmann, M.D.
PDB entry 8rdu: Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map
Classification: DNA BINDING PROTEIN
Source organism: Scytonema hofmannii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-12-08
Authors: Tenjo-Castano, F., Mesa, P., Montoya, G.
PDB entry 8rdv: Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
Classification: RIBOSOME
Source organism: Psychrobacter urativorans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-12-08
Authors: Helena-Bueno, K., Rybak, M.Y., Gagnon, M.G., Hill, C.H., Melnikov, S.V.
PDB entry 8rdw: Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
Classification: RIBOSOME
Source organism: Psychrobacter urativorans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2023-12-08
Authors: Helena-Bueno, K., Rybak, M.Y., Gagnon, M.G., Hill, C.H., Melnikov, S.V.
PDB entry 8rdx: PGGtase I in complex with probe BAY-6092
Classification: TRANSFERASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.67 Å
Deposited: 2023-12-08
Authors: Steuber, H.
PDB entry 8rdy: Saccharomyces cerevisiae Prp43 helicase in complex with Pxr1
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae; Schistosoma japonicum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-12-08
Authors: Rabl, J., Portugal Calisto, D., Panse, V.G.
PDB entry 8rdz: Crystal Structure of Human ADP-ribose Pyrophosphatase NUDT5 In complex with Ibrutinib
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-12-09
Authors: Raux, B., Huber, K.V.M.
PDB entry 8re0: Soluble glucose dehydrogenase from acinetobacter calcoaceticus - double mutant pH8
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-12-09
Authors: Lublin, V., Chavas, L., Stines-Chaumeil, C., Kauffmann, B., Giraud, M.F., Thompson, A.
PDB entry 8re2: Crystal Structure determination of Dye-decolorizing Peroxidase (DyP) from Deinoccoccus radiodurans
Classification: STRUCTURAL PROTEIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-12-10
Authors: Salgueiro, B.A., Frade, K., Frazao, C., Moe, E.
PDB entry 8re3: Crystal Structure determination of Dye-decolorizing Peroxidase (DyP) mutant M190G from Deinoccoccus radiodurans
Classification: STRUCTURAL PROTEIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-12-10
Authors: Salgueiro, B.A., Frade, K., Frazao, C., Matias, P., Moe, E.
PDB entry 8re4: Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 5nt pre-translocated complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella oxytoca
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-10
Authors: Gao, F., Zhang, X.
PDB entry 8re5: Aspartyl/Asparaginyl beta-hydroxylase (AspH) R735Q variant in complex with Mn, 2-oxosuberate and a Factor X derived peptide fragment
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-10
Authors: Brasnett, A., Hou, C., Rabe, P., Brewitz, L., Schofield, C.J.
PDB entry 8re6: Aspartyl/Asparaginyl beta-hydroxylase (AspH) R735Q variant in complex with Mn, 2-oxoglutarate and a Factor X derived peptide fragment
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-12-10
Authors: Brasnett, A., Hou, C., Rabe, P., Brewitz, L., Schofield, C.J.
PDB entry 8re7: Aspartyl/Asparaginyl beta-hydroxylase (AspH) R735W variant in complex with Mn, 2-oxoglutarate and a Factor X derived peptide fragment
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-10
Authors: Brasnett, A., Hou, C., Rabe, P., Brewitz, L., Schofield, C.J.
PDB entry 8re8: Aspartyl/Asparaginyl beta-hydroxylase (AspH) R688Q variant in complex with Mn, (3R)-methyl-2-oxoglutarate and a Factor X derived peptide fragment
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-12-10
Authors: Brasnett, A., Hou, C., Rabe, P., Brewitz, L., Schofield, C.J.
PDB entry 8re9: Aspartyl/Asparaginyl beta-hydroxylase (AspH) in complex with Mn, 2-oxoglutarate and a Factor X derived peptide fragment
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-12-10
Authors: Brasnett, A., Hou, C., Rabe, P., Brewitz, L., Schofield, C.J.
PDB entry 8rea: Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 5nt post-translocated complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella oxytoca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-10
Authors: Gao, F., Zhang, X.
PDB entry 8reb: Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 6nt complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella oxytoca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-10
Authors: Gao, F., Zhang, X.
PDB entry 8rec: Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 7nt complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella oxytoca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-12-10
Authors: Gao, F., Zhang, X.
PDB entry 8red: Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 8nt complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella oxytoca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-10
Authors: Gao, F., Zhang, X.
PDB entry 8ree: Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 9nt complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Klebsiella oxytoca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-12-10
Authors: Gao, F., Zhang, X.
PDB entry 8ref: Crystal structure of HLA B*13:01 in complex with SVLNDILARL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-11
Authors: Ahn, Y.M., Maddumage, J.C., Szeto, C., Gras, S.
PDB entry 8reg: Lysozyme measured via serial crystallography from a kapton HARE-chip (50 micron)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-11
Authors: Bosman, R., Prester, A., von Soosten, L., Dibenedetto, S., Bartels, K., Sung, S., von Stetten, D., Mehrabi, P., Schulz, E.C.
PDB entry 8reh: Lysozyme measured via serial crystallography from a kapton HARE-chip (125 micron)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-11
Authors: Bosman, R., Prester, A., von Soosten, L., Dibenedetto, S., Bartels, K., Sung, S., von Stetten, D., Mehrabi, P., Schulz, E.C.
PDB entry 8rei: CTX-M-14 measured via serial crystallography from a silicon HARE-chip.
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-12-11
Authors: Bosman, R., Prester, A., von Soosten, L., Dibenedetto, S., Bartels, K., Sung, S., von Stetten, D., Mehrabi, P., Schulz, E.C.
PDB entry 8rej: Crystal structure of PPAR gamma Ligand Binding Domain in complex with the ligand LBB78
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2023-12-11
Authors: Capelli, D., Montanari, R.
PDB entry 8rek: Plasmodium vivax Apical Membrane Antigen 1/Fab complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Plasmodium vivax Sal-1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-12-11
Authors: Bentley, G.A., Saul, F.A., Vulliez-LeNormand, B.
PDB entry 8rel: Fab of an anti-PvAMA1 monoclonal antibody
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-11
Authors: Bentley, G.A., Saul, F.A., Vulliez-LeNormand, B.
PDB entry 8rem: CTX-M-14 measured via serial crystallography from a kapton HARE-chip (50 micron)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-12-11
Authors: Bosman, R., Prester, A., von Soosten, L., Dibenedetto, S., Bartels, K., Sung, S., von Stetten, D., Mehrabi, P., Schulz, E.C.
PDB entry 8ren: Crystal structure of reduced ThyX
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.139 Å
Deposited: 2023-12-12
Authors: Pecqueur, L., Hamdane, D.
PDB entry 8reo: Crystal structure of reduced ThyX in complex with dUMP
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-12-12
Authors: Pecqueur, L., Hamdane, D.
PDB entry 8rep: Crystal structure of oxidized ThyX-Y91F mutant
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2023-12-12
Authors: Pecqueur, L., Hamdane, D.
PDB entry 8req: Crystal structure of reduced ThyX-Y91F mutant
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-12-12
Authors: Pecqueur, L., Hamdane, D.
PDB entry 8rer: Major groove intercalation with Polypyridyl Ruthenium complex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-12-12
Authors: Abdullrahman, A., Cardin, C.J., Hall, J.P.
PDB entry 8rev: Structure of XPD stalled at a Y-fork DNA containing a interstrand crosslink
Classification: DNA BINDING PROTEIN
Source organism: Thermochaetoides thermophila; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-12
Authors: Kuper, J., Hove, T., Kisker, C.
PDB entry 8rew: CryoEM structure of human GARP-lTGFbeta1 in complex with a Fab fragment derived from an activating antibody.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-12-12
Authors: Felix, J., Lambert, F., Marien, L., van der Woning, B., Savvides, S.N., Lucas, S.
PDB entry 8rex: CryoEM structure of mouse GARP-lTGFbeta1 in complex with a Fab fragment derived from an activating antibody.
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-12
Authors: Felix, J., Lambert, F., Marien, L., van der Woning, B., Savvides, S.N., Lucas, S.
PDB entry 8rey: Cuniculiplasma divulgatum filament
Classification: PROTEIN FIBRIL
Source organism: Cuniculiplasma divulgatum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2023-12-12
Authors: Isupov, M.N., Gaines, M., Daum, B., McLaren, M.
PDB entry 8rez: BmrA E504-apo
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-12
Authors: Gobet, A., Zarkadas, E., Schoehn, G., Falson, P., Chaptal, V.
PDB entry 8rf0: WT-CGS sample in nanodisc
Classification: ANTIBIOTIC
Source organism: Agrobacterium tumefaciens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-12
Authors: Sedzicki, J., Ni, D., Lehmann, F., Stahlberg, H., Dehio, C.
PDB entry 8rf1: BmrA E504-R6G
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-12-12
Authors: Gobet, A., Zarkadas, E., Schoehn, G., Falson, P., Chaptal, V.
PDB entry 8rf2: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 1E7 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rf3: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 7G3 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rf4: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 9D4 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rf5: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 11A7 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rf6: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 11A7_AL5 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rf7: Crystal structure of maize adenosine kinase 2 (ADK2) apoform
Classification: TRANSFERASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.051 Å
Deposited: 2023-12-12
Authors: Morera, S., Kopecny, D., Vigouroux, A.
PDB entry 8rf8: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 11A7_AL6 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rf9: CgsiGP1 sample in nanodisc
Classification: ANTIBIOTIC
Source organism: Agrobacterium tumefaciens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-12-12
Authors: Sedzicki, J., Ni, D., Lehmann, F., Stahlberg, H., Dehio, C.
PDB entry 8rfa: Arginase 2 in complex with an inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-12-12
Authors: Petersen, J.
PDB entry 8rfb: Cryo-EM structure of the R243C mutant of human Prolyl Endopeptidase-Like (PREPL) protein involved in Congenital myasthenic syndrome-22 (CMS22)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2023-12-12
Authors: Theodoropoulou, A., Cavani, E., Antanasijevic, A., Marcaida, M.J., Dal Peraro, M.
PDB entry 8rfc: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 7H2_AL1 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rfd: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 7H2_AL2 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rfe: CgsiGP2 sample in nanodisc
Classification: ANTIBIOTIC
Source organism: Agrobacterium tumefaciens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-12-12
Authors: Sedzicki, J., Ni, D., Lehmann, F., Stahlberg, H., Dehio, C.
PDB entry 8rff: Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 6A6 refined against the anomalous diffraction data
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-12-12
Authors: Ma, S., Damfo, S., Mykhaylyk, V., Kozielski, F.
PDB entry 8rfg: CgsiGP3 sample in nanodisc
Classification: ANTIBIOTIC
Source organism: Agrobacterium tumefaciens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-12-12
Authors: Sedzicki, J., Ni, D., Lehmann, F., Stahlberg, H., Dehio, C.
PDB entry 8rfh: CryoEM structure of the plant helper NLR NRC2 in its resting state
Classification: IMMUNE SYSTEM
Source organism: Nicotiana benthamiana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-12
Authors: Selvaraj, M., Kamoun, S., Contreras, M.P.
PDB entry 8rfj: DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans
Classification: GENE REGULATION
Source organism: Pseudomonas oleovorans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-12-12
Authors: Miksys, A., Cepaite, R., Malinauskaite, L., Pausch, P.
PDB entry 8rfk: Soluble glucose dehydrogenase from acinetobacter calcoaceticus - single mutant pH8
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-12-13
Authors: Lublin, V., Chavas, L., Stines-Chaumeil, C., Kauffmann, B., Giraud, M.F., Thompson, A.
PDB entry 8rfl: Low pH (5.5) nitrite-bound MSOX movie series dataset 1 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [0.61 MGy] - nitrite (start)
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfm: Human NOQ1 enzyme in complex with NADH by serial crystallography
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-12-13
Authors: Martin-Garcia, J.M., Grieco, A., Medina, M., Boneta, S., Pey, A.L.
PDB entry 8rfn: Human NOQ1 enzyme in its holo form by serial crystallography
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-12-13
Authors: Martin-Garcia, J.M., Grieco, A., Medina, M., Boneta, S., Pey, A.L.
PDB entry 8rfo: Low pH (pH 5.5) nitrite-bound MSOX movie series dataset 2 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [1.22 MGy] - nitrite intermediate
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfp: Low pH (5.5) nitrite-bound MSOX movie series dataset 3 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [1.83 MGy] - nitrite/NO intermediate
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfq: Low pH (5.5) nitrite-bound MSOX movie series dataset 5 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [3.05 MGy] - nitric oxide (NO) intermediate
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfr: Low pH (5.5) nitrite-bound MSOX movie series dataset 7 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [4.27 MGy] - NO/water intermediate
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfs: Low pH (5.5) nitrite-bound MSOX movie series dataset 11 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [6.71 MGy] - water ligand
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rft: Low pH (5.5) nitrite-bound MSOX movie series dataset 17 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [10.37 MGy] - water ligand + decarboxylated AspCAT
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfu: Low pH (5.5) nitrite-bound MSOX movie series dataset 40 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [24.4 MGy] - water ligand + decarboxylated AspCAT (final)
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfv: High pH (8.0) as-isolated MSOX movie series dataset 1 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [0.41 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfw: High pH (8.0) as-isolated MSOX movie series dataset 2 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [0.82 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfx: High pH (8.0) as-isolated MSOX movie series dataset 5 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [2.05 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfy: High pH (8.0) as-isolated MSOX movie series dataset 30 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [12.3 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rfz: Structure of E166A BlaC from Mycobacterium tuberculosis at pH 4.5
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-12-13
Authors: Sun, J., Bruenle, S., Ubbink, M.
PDB entry 8rg0: Structure of human eIF3 core from closed 48S translation initiation complex
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-13
Authors: Petrychenko, V., Yi, S.-H., Liedtke, D., Peng, B.Z., Rodnina, M.V., Fischer, N.
PDB entry 8rg1: Soluble glucose dehydrogenase from acinetobacter calcoaceticus - wild type pH8
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter calcoaceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2023-12-13
Authors: Lublin, V., Chavas, L., Stines-Chaumeil, C., Kauffmann, B., Giraud, M.F., Thompson, A.
PDB entry 8rg2: Structure of BlaC from Mycobacterium tuberculosis at pH 8
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-12-13
Authors: Sun, J., Bruenle, S., Ubbink, M.
PDB entry 8rg3: Crystal structure of PbFucA from Planctomycetes bacterium K23_9 in P 1 21 1
Classification: HYDROLASE
Source organism: Planctomycetes bacterium K23_9
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-12-13
Authors: Perez-Curz, C., Moraleda-Montoya, A., Liebana, R., Lorizate, M., Arrizabalaga, U., Garcia-Alija, M., Terrones, O., Contreras, F.X., Guerin, M.E., Trastoy, B., Alonso-Saez, L.
PDB entry 8rg4: Crystal structure of PbFucA from Planctomycetes bacterium K23_9 in P 21 21 21
Classification: HYDROLASE
Source organism: Planctomycetes bacterium K23_9
Experimental method: X-RAY DIFFRACTION
Resolution: 1.404 Å
Deposited: 2023-12-13
Authors: Perez-Cruz, C., Moraleda-Montoya, A., Liebana, R., Lorizate, M., Arrizabalaga, U., Garcia-Alija, M., Terrones, O., Contreras, F.X., Guerin, M.E., Trastoy, B., Alonso-Saez, L.
PDB entry 8rg5: Crystal structure of PbFucA from Planctomycetes bacterium K23_9 in P 4 21 2
Classification: HYDROLASE
Source organism: Planctomycetes bacterium K23_9
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-12-13
Authors: Perez-Cruz, C., Moraleda-Montoya, A., Liebana, R., Lorizate, M., Arrizabalaga, U., Garcia-Alija, M., Terrones, O., Contreras, F.X., Guerin, M.E., Trastoy, B., Alonso-Saez, L.
PDB entry 8rg6: Arginase 2 in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-12-13
Authors: Petersen, J.
PDB entry 8rg7: BmrA E504-R6G-25uMATP-Mg
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-13
Authors: Gobet, A., Zarkadas, E., Schoehn, G., Falson, P., Chaptal, V.
PDB entry 8rg8: High pH (8.0) nitrite-bound MSOX movie series dataset 1 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [0.68 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rg9: High pH (8.0) nitrite-bound MSOX movie series dataset 2 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [1.36 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rga: BmrA E504-25uMATPMg
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-13
Authors: Gobet, A., Zarkadas, E., Schoehn, G., Falson, P., Chaptal, V.
PDB entry 8rgb: High pH (8.0) nitrite-bound MSOX movie series dataset 5 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [3.4 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rgc: High pH (8.0) nitrite-bound MSOX movie series dataset 10 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [6.8 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rgd: High pH (8.0) nitrite-bound MSOX movie series dataset 15 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [10.2 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. ORS 375
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-12-13
Authors: Rose, S.L., Ferroni, F.M., Antonyuk, S.V., Eady, R.R., Hasnain, S.S.
PDB entry 8rge: Serial synchrotron in plate room temperature structure of Lysozyme.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-12-13
Authors: Thompson, A.J., Hough, M.A., Sanchez-Weatherby, J., Williams, L.J., Sandy, J., Worrall, J.A.R.
PDB entry 8rgf: Arginase 2 in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-12-13
Authors: Petersen, J.
PDB entry 8rgg: Structure of dynein-2 intermediate chain DYNC2I2 (WDR34) in complex with dynein-2 heavy chain DYNC2H1.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-13
Authors: Mukhopadhyay, A.G., Toropova, K., Daly, L., Wells, J., Vuolo, L., Mladenov, M., Seda, M., Jenkins, D., Stephens, D.J., Roberts, A.J.
PDB entry 8rgh: Structure of dynein-2 intermediate chain DYNC2I1 (WDR60) in complex with the dynein-2 heavy chain DYNC2H1.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-13
Authors: Mukhopadhyay, A.G., Toropova, K., Daly, L., Wells, J., Vuolo, L., Seda, M., Jenkins, D., Stephens, D.J., Roberts, A.J.
PDB entry 8rgi: Structure of DYNLT1:DYNLT2B (TCTEX1:TCTEX1D2) heterodimer.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-12-13
Authors: Mukhopadhyay, A.G., Toropova, K., Daly, L., Wells, J., Vuolo, L., Seda, M., Jenkins, D., Stephens, D.J., Roberts, A.J.
PDB entry 8rgj: Structure of maize adenosine kinase 2 (ADK2) in complex with AMP-PCP
Classification: TRANSFERASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.359 Å
Deposited: 2023-12-13
Authors: Morera, S., Kopecny, D., Vigouroux, A.
PDB entry 8rgk: Structure of Human Serum Albumin in complex with Aristolochic Acid at 1.9 A resolution
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-13
Authors: Pomyalov, S., Sidorenko, V.S., Grollman, A.P., Shoham, G.
PDB entry 8rgl: Structure of Human Serum Albumin in complex with Aristolochic Acid I at 1.9 A resolution - Optimized
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-13
Authors: Pomyalov, S., Sidorenko, V.S., Grollman, A.P., Shoham, G.
PDB entry 8rgm: Cryo-EM structure of nucleosome containing Widom603 DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-14
Authors: Motorin, N.A., Afonin, D., Armeev, G.A., Moiseenko, A., Zhao, L., Vasiliev, V., Oleinikov, P., Shaytan, A., Shi, X., Studitsky, V., Sokolova, O.
PDB entry 8rgn: BmrA E504-R6G-70uMATPMg
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-14
Authors: Gobet, A., Zarkadas, E., Schoehn, G., Falson, P., Chaptal, V.
PDB entry 8rgp: Closed Complex I from murine brain
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-14
Authors: Vercellino, I., Sazanov, L.A.
PDB entry 8rgq: Open Complex I from murine liver
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-14
Authors: Vercellino, I., Sazanov, L.A.
PDB entry 8rgr: Closed Complex I from murine liver
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-12-14
Authors: Vercellino, I., Sazanov, L.A.
PDB entry 8rgs: Serial synchrotron in plate room temperature structure of Dye Type Peroxidase Aa
Classification: OXIDOREDUCTASE
Source organism: Streptomyces lividans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-12-14
Authors: Thompson, A.J., Hough, M.A., Williams, L.J., Worrall, J.A.R., Sanchez-Weatherby, J., Mikolajek, H., Sandy, J.
PDB entry 8rgt: Open Complex I from murine brain
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-14
Authors: Vercellino, I., Sazanov, L.A.
PDB entry 8rgu: Arginase 2 in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-14
Authors: Petersen, J.
PDB entry 8rgw: Serial synchrotron in plate room temperature structure of Dye Type Peroxidase Aa, 12 drops merged
Classification: OXIDOREDUCTASE
Source organism: Streptomyces lividans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-12-14
Authors: Thompson, A.J., Hough, M.A., Williams, L.J., Worrall, J.A.R., Sanchez-Weatherby, J., Mikolajek, H., Sandy, J.
PDB entry 8rgx: Cryo-EM structure of the Bacterial Proteasome Activator Bpa of Mycobacterium tuberculosis
Classification: CHAPERONE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-14
Authors: Zdanowicz, R., von Rosen, T., Afanasyev, P., Boehringer, D., Glockshuber, R., Weber-Ban, E.
PDB entry 8rgy: Serial synchrotron in plate room temperature structure of Dye Type Peroxidase Aa, 8 drops merged
Classification: OXIDOREDUCTASE
Source organism: Streptomyces lividans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-12-14
Authors: Thompson, A.J., Hough, M.A., Williams, L.J., Worrall, J.A.R., Sanchez-Weatherby, J., Mikolajek, H., Sandy, J.
PDB entry 8rgz: Trimeric HSV-1F gB ectodomain in postfusion conformation with three bound HDIT101 Fab molecules.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human alphaherpesvirus 1 strain F
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-12-14
Authors: Kalbermatter, D., Seyfizadeh, N., Imhof, T., Ries, M., Mueller, C., Jenner, L., Blumenschein, E., Yendrzheyevskiy, A., Moog, K., Eckert, D., Engel, R., Diebolder, P., Chami, M., Krauss, J., Schaller, T., Arndt, M.
PDB entry 8rh0: Trimeric HSV-1F gB ectodomain in postfusion conformation with three bound HDIT102 Fab molecules.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-12-14
Authors: Kalbermatter, D., Seyfizadeh, N., Imhof, T., Ries, M., Mueller, C., Jenner, L., Blumenschein, E., Yendrzheyevskiy, A., Moog, K., Eckert, D., Engel, R., Diebolder, P., Chami, M., Krauss, J., Schaller, T., Arndt, M.
PDB entry 8rh1: Trimeric HSV-2F gB ectodomain in postfusion conformation with three bound HDIT101 Fab molecules.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human herpesvirus 2 strain G
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2023-12-14
Authors: Kalbermatter, D., Seyfizadeh, N., Imhof, T., Ries, M., Mueller, C., Jenner, L., Blumenschein, E., Yendrzheyevskiy, A., Moog, K., Eckert, D., Engel, R., Diebolder, P., Chami, M., Krauss, J., Schaller, T., Arndt, M.
PDB entry 8rh2: Trimeric HSV-2G gB ectodomain in postfusion conformation with three bound HDIT102 Fab molecules.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human herpesvirus 2 strain G
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-12-14
Authors: Kalbermatter, D., Seyfizadeh, N., Imhof, T., Ries, M., Mueller, C., Jenner, L., Blumenschein, E., Yendrzheyevskiy, A., Moog, K., Eckert, D., Engel, R., Diebolder, P., Chami, M., Krauss, J., Schaller, T., Arndt, M.
PDB entry 8rh3: Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Gemcitabine
Classification: TRANSFERASE
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-12-14
Authors: Tang, P., Harding, C.J., Czekster, C.M.
PDB entry 8rh4: CryoEM structure of human rho1 GABAA receptor in complex with estradiol
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2023-12-14
Authors: Chen, F., John, C., Rebecca, J.H., Erik, L.
PDB entry 8rh5: Oxiplasma meridianum archaellum
Classification: PROTEIN FIBRIL
Source organism: Oxyplasma meridianum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-12-14
Authors: Isupov, M.N., Gaines, M., Daum, B., McLaren, M.
PDB entry 8rh6: Crystal structure of HLA-A*11:01 in complex with SVLNDILSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2023-12-15
Authors: Ahn, Y.M., Maddumage, J.C., Szeto, C., Gras, S.
PDB entry 8rh7: CryoEM structure of human rho1 GABAA receptor in complex with GABA and estradiol in primed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-12-15
Authors: Chen, F., John, C., Rebecca, J.H., Erik, L.
PDB entry 8rh8: CryoEM structure of human rho1 GABAA receptor in complex with GABA and estradiol in desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-12-15
Authors: Chen, F., John, C., Rebecca, J.H., Erik, L.
PDB entry 8rh9: CryoEM structure of human rho1 GABAA receptor in complex with pregnenolone sulfate
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-12-15
Authors: Chen, F., John, C., Rebecca, J.H., Erik, L.
PDB entry 8rha: HSPB7ACD C131S
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-12-15
Authors: Wang, Z., Benesch, J., Allison, T.M., McDonough, M.A., Song, H., Bolla, J.R.
PDB entry 8rhb: Microtubule-associated kinesin-1 tail complex bound to AMPPNP, single-headed state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-15
Authors: Atherton, J., Chegkazi, M.S., Steiner, R.A.
PDB entry 8rhe: Lytic Transglycosylase MltD of Pseudomonas aeruginosa bound to the Natural Product Bulgecin A
Classification: LYASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-15
Authors: Miguel-Ruano, V., Hermoso, J.A.
PDB entry 8rhf: Lytic Transglycosylase MltD of Pseudomonas aeruginosa bound to the Natural Product Bulgecin A, with two LysM domains
Classification: LYASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-15
Authors: Miguel-Ruano, V., Hermoso, J.A.
PDB entry 8rhg: CryoEM structure of human rho1 GABAA receptor in complex with GABA and pregnenolone sulfate
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-12-15
Authors: Chen, F., John, C., Rebecca, J.H., Erik, L.
PDB entry 8rhh: Microtubule-associated kinesin-1 tail complex bound to AMPPNP, two-headed state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-15
Authors: Atherton, J., Chegkazi, M.S., Steiner, R.A.
PDB entry 8rhi: Lytic Transglycosylase MltD of Pseudomonas aeruginosa in a ternary complex bound to Bulgecin A and chito-tetraose
Classification: LYASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-12-15
Authors: Miguel-Ruano, V., Hermoso, J.A.
PDB entry 8rhj: Yeast 20S proteasome in complex with a macrocyclic oxindole epoxyketone (compound 5)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-12-15
Authors: Goetz, M.G., Godwin, K., Price, R., Dorn, R., Merrill-Steskal, G., Hansen, H., Klemmer, W., Produturi, G., Rocha, M., Palmer, M., Molacek, L., Strater, Z., Groll, M.
PDB entry 8rhk: Yeast 20S proteasome in complex with a linear oxindole epoxyketone (compound 6)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-12-15
Authors: Goetz, M.G., Godwin, K., Price, R., Dorn, R., Merrill-Steskal, G., Hansen, H., Klemmer, W., Produturi, G., Rocha, M., Palmer, M., Molacek, L., Strater, Z., Groll, M.
PDB entry 8rhl: Yeast 20S proteasome in complex with a linear biarylether epoxyketone (compound 15a)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-12-15
Authors: Goetz, M.G., Godwin, K., Price, R., Dorn, R., Merrill-Steskal, G., Hansen, H., Klemmer, W., Produturi, G., Rocha, M., Palmer, M., Molacek, L., Strater, Z., Groll, M.
PDB entry 8rhm: Solution structure of sulfazecin NRPS holo-PCP domain 3
Classification: TRANSFERASE
Source organism: Burkholderia thailandensis E264
Experimental method: SOLUTION NMR
Deposited: 2023-12-15
Authors: Chagot, B.
PDB entry 8rhn: Structure of the 55LCC ATPase complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-12-15
Authors: Foglizzo, M., Degtjarik, O., Zeqiraj, E.
PDB entry 8rho: [2Fe:2S] ferredoxin FeSII from Azotobacter vinelandii, reduced form
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii DJ
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-12-15
Authors: Franke, P., Zhang, L., Einsle, O.
PDB entry 8rhp: Cryo-EM structure of the molybdenum nitrogenase complexed with iron protein (NifH) and Shethna protein II (FeSII)
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-12-15
Authors: Franke, P., Zhang, L., Einsle, O.
PDB entry 8rhq: Crystal structure of HLA-A*11:01 in complex with SVLNDIFSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-16
Authors: Ahn, Y.M., Maddumage, J.C., Szeto, C., Gras, S.
PDB entry 8rhr: E.coli Peptide Deformylase with bound inhibitor BB4
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-12-16
Authors: Kirschner, H., Stoll, R., Hofmann, E.
PDB entry 8rhs: Structure of the ZnF domain from human Roquin-1
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-12-16
Authors: Schlundt, A., Tants, J.N.
PDB entry 8rht: Crystal Structure of Trypanosoma brucei DHFR in complex with the cofactor and inhibitor P25
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-12-17
Authors: Pozzi, C., Mangani, S., Landi, G.
PDB entry 8rhu: Crystal Structure of Trypanosoma brucei PTR1 in complex with the cofactor and inhibitor P25
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-12-17
Authors: Pozzi, C., Mangani, S., Landi, G.
PDB entry 8rhv: Crystal Structure of Trypanosoma brucei PTR1 in complex with the cofactor and inhibitor P30
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-17
Authors: Pozzi, C., Mangani, S., Landi, G.
PDB entry 8rhw: Crystal Structure of Trypanosoma brucei PTR1 in complex with the cofactor and inhibitor P31
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-17
Authors: Pozzi, C., Mangani, S., Landi, G.
PDB entry 8rhx: Crystal Structure of Trypanosoma brucei PTR1 in complex with the cofactor and inhibitor P32
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-12-17
Authors: Pozzi, C., Mangani, S., Landi, G.
PDB entry 8rhy: Crystal Structure of Trypanosoma brucei PTR1 in complex with the cofactor and inhibitor P34
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-12-17
Authors: Pozzi, C., Mangani, S., Landi, G.
PDB entry 8rhz: Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-12-17
Authors: Hopf, L.V.M., Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.
PDB entry 8ri0: Crystal structure of Tm1570 domain from Calditerrivibrio nitroreducens in complex with S-adenosyl-L-methionine
Classification: TRANSFERASE
Source organism: Calditerrivibrio nitroreducens DSM 19672
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-18
Authors: Kluza, A., Lewandowska, I., Sulkowska, J.
PDB entry 8ri1: BmrA E504-100uMATPMg
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-18
Authors: Gobet, A., Zarkadas, E., Schoehn, G., Falson, P., Chaptal, V.
PDB entry 8ri2: Crystal structure of NLRP3 in complex with inhibitor NP3-562
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-12-18
Authors: Dekker, C.