LiteFold/PDB huggingface dataset:
PDB entry 9dtw: Co-crystal structure of the ternary complex of human FKBP12, QDPR and Compound 4
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2024-10-02
Authors: Romanowski, M.J., Viscomi, J.S.
PDB entry 9dtx: Crystal structure of PRT3789 in complex with the bromodomain of human BRG1 (SMARCA4) and pVHL:ElonginC:ElonginB
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-10-02
Authors: Wang, M., Dou, Y., Xu, C.
PDB entry 9dty: Crystal structure of PRT3789 in complex with the bromodomain of human BRM (SMARCA2) and pVHL:ElonginC:ElonginB
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2024-10-02
Authors: Dou, Y., Wang, M., Xu, C.
PDB entry 9dtz: SARS-CoV-2 Mpro in complex with compound 5
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-10-02
Authors: Bigelow, L., Tang, H., Boguslaw, N., Duda, D.M.
PDB entry 9du0: Crystal structure of the bromodomain of human BRM (SMARCA2) in complex with a SMARCA-BD binder
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-10-02
Authors: Wang, M., Dou, Y., Xu, C.
PDB entry 9du1: Co-crystal structure of the ternary complex of human FKBP12, BRD9 bromo domain and Compound 1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-10-02
Authors: Romanowski, M.J., Viscomi, J.S.
PDB entry 9du2: SARS-CoV-2 Mpro in complex with compound 7
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2024-10-02
Authors: Bigelow, L., Tang, H., Boguslaw, N., Duda, D.M.
PDB entry 9du3: SARS-CoV-2 Mpro in complex with compound 1
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2024-10-02
Authors: Bigelow, L., Tang, H., Boguslaw, N., Duda, D.M.
PDB entry 9du4: SARS-CoV-2 Mpro in complex with compound 3
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-10-02
Authors: Bigelow, L., Tang, H., Boguslaw, N., Duda, D.M.
PDB entry 9du5: Cryo-EM structure of phosphoglucomutase from Thermococcus kodakarensis
Classification: ISOMERASE
Source organism: Thermococcus kodakarensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-10-02
Authors: Naz, Z., Rathore, I., Saleem, M., Rahman, M., Rashid, N., Wlodawer, A.
PDB entry 9du6: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ATP bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9du7: KEAP1 BTB domain in complex with the covalent activator VVD-065
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.867 Å
Deposited: 2024-10-02
Authors: Bernard, S.M.
PDB entry 9du8: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP/Mg bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9du9: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (GDP/Mg bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dua: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (GMP bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dub: Crystal Structure of Human DAPK1 Catalytic Subunit Complexed with Compound SRM-25-071
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-10-02
Authors: Minasov, G., Winsor, J., Roy, S.M., Watterson, D.M., Shuvalova, L.
PDB entry 9duc: Wild-Type E. coli Glucokinase
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2024-10-02
Authors: Andrews, J.R.W., Sakon, J., Fan, C.
PDB entry 9dud: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (FAD bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9due: Crystal Structure of Human DAPK1 Catalytic Subunit Complexed with Compound SRM-07-081a
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-10-02
Authors: Minasov, G., Winsor, J., Roy, S.M., Watterson, D.M., Shuvalova, L.
PDB entry 9duf: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (FMN bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dug: Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (Sulfate bound)
Classification: TRANSFERASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dui: Re-refined of Crystal structure of dopa decarboxylase in complex with the inhibitor carbidopa (1JS3) with ketoenamine form of carbidopa
Classification: LYASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-10-03
Authors: Doukov, I.T., Berkowitz, B.D.
PDB entry 9duj: Crystal structure of RufO in complex with (Nle)RYLH
Classification: OXIDOREDUCTASE
Source organism: Streptomyces atratus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2024-10-03
Authors: Nolan, K., Wang, Y.
PDB entry 9duk: Structure of mutant 30S subunit with extended helix 26, version 3
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2024-10-03
Authors: Boyko, K., Cate, J.
PDB entry 9dul: Structure of mutant 30S subunit with extended helix 26, version 4
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2024-10-03
Authors: Boyko, K., Cate, J.
PDB entry 9dum: Human PELP1-WDR18-TEX10 complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-10-03
Authors: Huang, J., Tong, L.
PDB entry 9dun: Human LAS1L-NOL9 complex
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-10-03
Authors: Huang, J., Tong, L.
PDB entry 9duo: Human PELP1-WDR18 complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2024-10-03
Authors: Huang, J., Tong, L.
PDB entry 9duq: HURP(65-174) bound to GMPCPP-stabilized microtubule
Classification: CELL CYCLE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-03
Authors: Ma, M., Valdez, V., Petry, S., Zhang, R.
PDB entry 9dur: Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-04
Authors: Cheong, H., Hunkeler, M., Fischer, E.S.
PDB entry 9dus: Cryo-EM structure of the Measles Virus polymerase (L) protein in complex with the tetrameric phosphoprotein (P)
Classification: TRANSFERASE, VIRAL PROTEIN
Source organism: Measles virus strain Edmonston-B
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-10-04
Authors: Liu, B., Wang, D., Yang, G.
PDB entry 9dut: Cryo-EM structure of the Measles Virus polymerase (L) protein in complex with the tetrameric phosphoprotein (P) and C protein
Classification: TRANSFERASE, VIRAL PROTEIN
Source organism: Measles virus strain Edmonston-B
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-04
Authors: Liu, B., Wang, D., Yang, G.
PDB entry 9duu: Cryo-EM structure of recombinant wildtype ACTA1 phalloidin-stabilized F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-04
Authors: Garg, A., Greenberg, M.J., Zhang, R.
PDB entry 9duv: Cryo-EM structure of recombinant R254H ACTA1 phalloidin-stabilized F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-04
Authors: Garg, A., Greenberg, M.J., Zhang, R.
PDB entry 9dv8: The Apo structure of AckA from Treponema vincentii
Classification: TRANSFERASE
Source organism: Treponema vincentii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-10-05
Authors: Brautigam, C.A., Deka, R.K.
PDB entry 9dv9: The AMP-bound structure of AckA from Treponema vincentii
Classification: TRANSFERASE
Source organism: Treponema pallidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-10-05
Authors: Brautigam, C.A., Deka, R.K.
PDB entry 9dva: F-actin binding interface of alpha-E-catenin ABD (cadherin-catenin complex) and afadin
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-07
Authors: Gong, R., Reynolds, M.J., Alushin, G.M.
PDB entry 9dvb: Thermus thermophilus MreC-MreD complex with an internal MreD BRIL fusion and an anti-BRIL Fab
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; synthetic construct; Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-10-07
Authors: Gilman, M.S.A., Kruse, A.C.
PDB entry 9dvc: Thermus thermophilus MreC-MreD complex with a C-terminal MreD BRIL fusion and an anti-BRIL Fab
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; synthetic construct; Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.4 Å
Deposited: 2024-10-07
Authors: Gilman, M.S.A., Kruse, A.C.
PDB entry 9dvd: Cryo EM structure of Hendra G ectodomain in complex with Ephrin-B2 and Fab HENV-270
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Henipavirus hendraense; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-07
Authors: Binshtein, E., Crowe, J.E.
PDB entry 9dve: X-ray crystal structure of Kohinoor reversibly switchable fluorescent protein
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-10-07
Authors: Richardson, B.C., He, Y., Iuliano, J.N., Woroniecka, H.A., French, J.B.
PDB entry 9dvf: Structure of the native PLP synthase subunit PdxS from Methanosarcina acetivorans
Classification: LYASE
Source organism: Methanosarcina acetivorans C2A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-10-07
Authors: Agnew, A., Humm, E., Zhou, K., Gunsalus, R., Zhou, Z.H.
PDB entry 9dvg: Crystal Structure of a DARPin Fused to the 1TEL Crystallization Chaperone via a Direct Helical Fusion in a 2-Fold Crystal Form
Classification: PROTEIN BINDING
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.542 Å
Deposited: 2024-10-07
Authors: Pedroza Romo, M.J., Averett, J.C., Keliiliki, A., Wilson, E.W., Smith, C., Hansen, D., Averett, B., Gonzalez, J., Noakes, E., Nickles, R., Doukov, T., Moody, J.D.
PDB entry 9dvh: A1 Tei + D-Hpg: Adenylation Domain 1 Core Construct from Teicoplanin Biosynthesis with D-4-Hydroxyphenylglycine
Classification: LIGASE
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.656 Å
Deposited: 2024-10-07
Authors: Hansen, M.H., Cryle, M.J., Ratnayake, M.S.
PDB entry 9dvi: Hetero-hexameric Hsp70-Hsp40-DafA complex
Classification: CHAPERONE
Source organism: Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-10-08
Authors: Ibrahim, Z., Kalodimos, C.
PDB entry 9dvj: ""Structure of the phosphate exporter XPR1/SLC53A1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2024-10-08
Authors: Zhu, Q., Diver, M.M.
PDB entry 9dvk: Structure of the phosphate exporter XPR1/SLC53A1, rotated dimer
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-10-08
Authors: Zhu, Q., Diver, M.M.
PDB entry 9dvl: Structure of the phosphate exporter XPR1/SLC53A1, InsP6-supplemented
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-10-08
Authors: Zhu, Q., Diver, M.M.
PDB entry 9dvm: Structure of the phosphate exporter XPR1/SLC53A1, InsP8-bound, intracellular gate open/intracellular gate closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-10-08
Authors: Zhu, Q., Diver, M.M.
PDB entry 9dvn: Structure of the phosphate exporter XPR1/SLC53A1, InsP8-bound, intracellular gate closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-10-08
Authors: Zhu, Q., Diver, M.M.
PDB entry 9dvo: Structure of the phosphate exporter XPR1/SLC53A1, Pi and InsP8-bound, intracellular gate open/intracellular gate closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-08
Authors: Zhu, Q., Diver, M.M.
PDB entry 9dvp: Structure of the phosphate exporter XPR1/SLC53A1, Pi and InsP8-bound, intracellular gate closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-10-08
Authors: Zhu, Q., Diver, M.M.
PDB entry 9dvq: Cryo-EM structure of Human Fibroblast Activation Protein alpha dimer with one SUMO-I3 VHHs bound
Classification: HYDROLASE
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-10-08
Authors: Xu, Z., Schnicker, N.J., Wadas, T.J.
PDB entry 9dvr: Cryo-EM structure of Human Fibroblast Activation Protein alpha dimer with two SUMO-I3 VHHs bound
Classification: HYDROLASE
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-10-08
Authors: Xu, Z., Schnicker, N.J., Wadas, T.J.
PDB entry 9dvs: CryoEM structure of Syn7942 RNAP-SigA holoenzyme
Classification: DNA BINDING PROTEIN/DNA
Source organism: Synechococcus elongatus; Synechococcus elongatus PCC 7942 = FACHB-805; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-10-08
Authors: Fang, M., Gu, Y., Matyszewski, M., Leanca, M., LiWang, A., Yuzenkova, Y., Corbett, K.D., Golden, S.E.
PDB entry 9dvt: Cryo-EM structure of RpaA bound to PkaiBC DNA and the CTD of the alpha subunit of RNAP from the cyanobacterium Synechococcus elongatus
Classification: DNA BINDING PROTEIN/DNA
Source organism: Synechococcus elongatus; Synechococcus elongatus PCC 7942 = FACHB-805; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-10-08
Authors: Fang, M., Gu, Y., Matyszewski, M., Leanca, M., LiWang, A., Yuzenkova, Y., Corbett, K.D., Golden, S.E.
PDB entry 9dvu: CryoEM structure of RpaA bound to PkaiBC DNA and Syn7942 RNAP-SigA holoenzyme
Classification: DNA BINDING PROTEIN/DNA
Source organism: Synechococcus elongatus; Synechococcus elongatus PCC 7942 = FACHB-805; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-10-08
Authors: Fang, M., Gu, Y., Matyszewski, M., Leanca, M., LiWang, A., Yuzenkova, Y., Corbett, K.D., Golden, S.E.
PDB entry 9dvy: Human mitochondrial ClpX with endogenous substrate
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-08
Authors: Chen, W.C.
PDB entry 9dvz: Wild-Type E. coli Glucokinase with Glucose bound
Classification: TRANSFERASE/SUBSTRATE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2024-10-08
Authors: Andrews, J.R.W., Sakon, J., Fan, C.
PDB entry 9dw0: Human ClpX-bound ClpP
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-08
Authors: Chen, W.C.
PDB entry 9dw1: Human mitochondrial ClpP protease
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-08
Authors: Chen, W.C.
PDB entry 9dw2: Crystal structure of ABLE, 10% DMSO soak
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-10-08
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9dw3: Human mitochondrial ClpP in complex with Bortezomib
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-10-08
Authors: Chen, W.
PDB entry 9dw4: Dephosphorylated CFTR in 1:1 complex with PKA-C (site II)
Classification: HYDROLASE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2024-10-08
Authors: Fiedorczuk, K., Chen, J., Csanady, L.
PDB entry 9dw5: Dephosphorylated CFTR in 1:1 complex with PKA-C (site I)
Classification: HYDROLASE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-10-08
Authors: Fiedorczuk, K., Chen, J., Csanady, L.
PDB entry 9dw6: Crystal structure of SARS-CoV-2 main protease (Mpro) C145A mutant in complex with peptide from human tRNA methyltransferase TRMT1
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-10-08
Authors: D'Oliviera, A., Mugridge, J.S.
PDB entry 9dw7: Dephosphorylated CFTR in 1:2 complex with PKA-C
Classification: HYDROLASE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2024-10-08
Authors: Fiedorczuk, K., Chen, J., Csanady, L.
PDB entry 9dw8: Dephosphorylated (E1371Q)CFTR in complex with PKA-C
Classification: HYDROLASE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-10-08
Authors: Fiedorczuk, K., Chen, J., Csanady, L.
PDB entry 9dw9: Phosphorylated (E1371Q)CFTR in complex with PKA-C
Classification: HYDROLASE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-08
Authors: Fiedorczuk, K., Chen, J., Csanady, L.
PDB entry 9dwa: Crystal structure of FABLE, MPD condition
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-10-09
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9dwb: Crystal structure of FABLE, PEG 400 condition
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-10-09
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9dwc: Crystal structure of FABLE, PEG 600 condition
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2024-10-09
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9dwd: Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles (T8I)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-10-09
Authors: Wu, C., Meuser, M.E., Xiong, Y.
PDB entry 9dwe: Cryo-EM structure of hemagglutinin H5 A/Texas/37/2024 in complex with LSTa and antibody CR9114
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-09
Authors: Fernandez-Quintero, M.L., Han, J., Rodriguez, A.J., Ward, A.B.
PDB entry 9dwf: Nucleosome containing a 1-nt gap at SHL-4.5
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-09
Authors: Weaver, T.M., Ryan, B.J., Freudenthal, B.D.
PDB entry 9dwg: DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 1, composite)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-09
Authors: Weaver, T.M., Ryan, B.J., Freudenthal, B.D.
PDB entry 9dwh: DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 2, composite)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-09
Authors: Weaver, T.M., Ryan, B.J., Freudenthal, B.D.
PDB entry 9dwi: DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 3, composite)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-09
Authors: Weaver, T.M., Ryan, B.J., Freudenthal, B.D.
PDB entry 9dwj: Nucleosome containing a 1-nt gap at SHL-3.5
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-09
Authors: Weaver, T.M., Ryan, B.J., Freudenthal, B.D.
PDB entry 9dwk: DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-3.5
Classification: DNA BINDING PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-10-09
Authors: Weaver, T.M., Ryan, B.J., Freudenthal, B.D.
PDB entry 9dwl: Nucleosome containing a 1-nt gap at SHL-5.5
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-10-09
Authors: Weaver, T.M., Ryan, B.J., Freudenthal, B.D.
PDB entry 9dwm: DNA polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-5.5
Classification: DNA BINDING PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-10-09
Authors: Weaver, T.M., Ryan, B.J., Freudenthal, B.D.
PDB entry 9dwn: hTHIK1 Cryo-EM structure in GDN detergent
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-09
Authors: Riel, E.B., Riegelhaupt, P.M.
PDB entry 9dwo: Crystal Structure of C4-Dicarboxylate-Binding Protein (PA0884) of Tripartite ATP-independent Periplasmic Transporter Family from Pseudomonas aeruginosa PAO1 in Complex with L-Malate
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-10-09
Authors: Minasov, G., Shukla, S., Shuvalova, L., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dwp: Crystal Structure of C4-Dicarboxylate-Binding Protein (PA0884) of Tripartite ATP-independent Periplasmic Transporter Family from Pseudomonas aeruginosa PAO1 in Complex with Mesaconic Acid
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-10-09
Authors: Minasov, G., Shukla, S., Shuvalova, L., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dwq: PKD2 ion channel, F629S variant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-10-09
Authors: Esarte Palomero, O., DeCaen, P.G.
PDB entry 9dwr: The crystal structure of F182AQE CYP199A4 bound to 4-methoxybenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-10
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dws: X-ray crystal structure of Francisella hispaniensis apo ribonucleotide reductase beta subunit
Classification: OXIDOREDUCTASE
Source organism: Francisella hispaniensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-10-10
Authors: Peduzzi, O.M., Lin, C.-Y., Boal, A.K.
PDB entry 9dwt: PKD2 ion channel, F634A mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-10-10
Authors: Esarte Palomero, O., DeCaen, P.G.
PDB entry 9dwu: CoREST complex bound to U2AF2
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.14 Å
Deposited: 2024-10-10
Authors: Hicks, C.W., Alani, R.M.
PDB entry 9dwv: Ternary complex of CRBN-DDB1-PPIL4 RRM domain with FPFT-2216
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-10-10
Authors: Baek, K., Fischer, E.S.
PDB entry 9dww: Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-10
Authors: Baek, K., Fischer, E.S.
PDB entry 9dwy: Cryo-EM structure of human MCT8 in complex with thyroid hormone T3
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-10
Authors: Ge, Y., Dou, T., Jiang, J., Huang, P.
PDB entry 9dwz: Light Harvesting complex 3 (LH3), B800-B820, of Rhodoblastus (Rbl.) acidophilus strain 7750
Classification: PHOTOSYNTHESIS
Source organism: Rhodoblastus acidophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2024-10-10
Authors: Harris, D., Schlau-Cohen, G.S.
PDB entry 9dx3: EcRuvB 9-mer pre-assembly complex
Classification: MOTOR PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-10-10
Authors: Rish, A.D., Fu, T.M.
PDB entry 9dx4: EcRuvB T102R mutant
Classification: MOTOR PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-10-10
Authors: Rish, A.D., Fu, T.M.
PDB entry 9dx5: EcRuvB T102R hexamer assembly
Classification: MOTOR PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-10-10
Authors: Rish, A.D., Fu, T.M.
PDB entry 9dx6: Crystal structure of Plasmodium vivax (Palo Alto) PvAMA1 in complex with human Fab 826827
Classification: CELL INVASION
Source organism: Homo sapiens; Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-10-10
Authors: Dietrich, M.H., Tham, W.H., Jung, N.C.
PDB entry 9dx7: LRRC8A:D Conformation 1
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-10
Authors: Lurie, A., Brohawn, S.G.
PDB entry 9dx8: The crystal structure of F182AQE CYP199A4 bound to 4-vinylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.679 Å
Deposited: 2024-10-10
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dx9: The crystal structure of F182AQE CYP199A4 bound to 4-t-butylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-10-10
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dxa: LRRC8A:D Conformation 2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-11
Authors: Lurie, A., Brohawn, S.G.
PDB entry 9dxb: Crystal structure of cobalt-incorporated human 2-aminoethanethiol (aka cysteamine) dioxygenase (ADO) variant C18S/C239S in complex with CP6-L8d-Gly-Ser
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-10-11
Authors: Jiramongkol, Y., Patel, K., White, M.D.
PDB entry 9dxc: Model of tubulin dimers used for determining the dimer rise in a taxol-stabilized microtubule-HURP complex
Classification: PROTEIN BINDING
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-11
Authors: Perez-Bertoldi, J.M., Nogales, E.
PDB entry 9dxd: attLmm bound serine integrase and RDF complex in the pre-rotation state
Classification: DNA BINDING PROTEIN
Source organism: Bacillus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2024-10-11
Authors: Shin, H., Rice, P.A., Olorunniji, F.J.
PDB entry 9dxe: Model of tubulin dimers used for determining the dimer rise in a taxol-stabilized microtubule
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-11
Authors: Perez-Bertoldi, J.M., Nogales, E.
PDB entry 9dxf: attLmm bound serine integrase and RDF complex in the post-rotation state
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2024-10-11
Authors: Shin, H., Rice, P.A., Olorunniji, F.J.
PDB entry 9dxg: attP bound large serine integrase and RDF complex in the dimeric state (cleaved)
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.61 Å
Deposited: 2024-10-11
Authors: Shin, H., Rice, P.A., Olorunniji, F.J.
PDB entry 9dxh: attPmm and attBmm bound serine integrase complex in the pre-rotation state
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.69 Å
Deposited: 2024-10-11
Authors: Shin, H., Rice, P.A., Olorunniji, F.J.
PDB entry 9dxi: Crystal structure of dimer Caenorhabditis elegans lipid binding protein 3 (LBP-3)
Classification: LIPID BINDING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-10-11
Authors: Cuevas, A.R., Tillman, M.C., Ortlund, E.A.
PDB entry 9dxj: attPmm and attBmm bound serine integrase complex in the post-rotation state
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.69 Å
Deposited: 2024-10-11
Authors: Shin, H., Rice, P.A., Olorunniji, F.J.
PDB entry 9dxk: attPmm bound serine integrase complex in the tetrameric state
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.81 Å
Deposited: 2024-10-11
Authors: Shin, H., Rice, P.A., Olorunniji, F.J.
PDB entry 9dxl: RhoBAST RNA aptamer in complex with the SpyRho555 analogue, MaP555
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-10-11
Authors: Siwik, S.H., Batey, R.T.
PDB entry 9dxm: Cryo-EM structure of yeast Exportin Msn5 bound to RanGTP and Pho4 (not modeled) (State 2-1)
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-11
Authors: Fung, H.Y.J., Chook, Y.M.
PDB entry 9dxn: Structure of AcrB in the form of Native cell membrane nanoparticles (NCMNP33-50)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-10-11
Authors: Guo, Y., Plutkins, S., Trinh, T.K.H., Catalano, C., Lin, Y.L., Guo, H.
PDB entry 9dxo: Cryo-EM structure of human OATP1C1 F240A mutant in complex with estrone 3-sulfate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-10-11
Authors: Ge, Y., Yadav, G.P., Jiang, J., Huang, P.
PDB entry 9dxp: Cryo-EM structure of human OATP1C1 in complex with thyroid hormone T4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-10-11
Authors: Ge, Y., Dou, T., Jiang, J., Huang, P.
PDB entry 9dxq: Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Philanthotoxin-74
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-10-11
Authors: Gangwar, S.P., Yen, L.Y., Newton, T.P., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 9dxr: Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Nephilatoxin-8
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-11
Authors: Gangwar, S.P., Yen, L.Y., Newton, T.P., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 9dxs: Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Spermine
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-10-11
Authors: Gangwar, S.P., Yen, L.Y., Newton, T.P., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 9dxt: Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Kukoamine-A
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2024-10-11
Authors: Yen, L.Y., Newton, T.P., Gangwar, S.P., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 9dxu: Crystal structure of cobalt-incorporated human 2-aminoethanethiol (aka cysteamine) dioxygenase (ADO) variant C18S/C239S in complex with CP6
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-10-11
Authors: Jiramongkol, Y., Patel, K., White, M.D.
PDB entry 9dxv: Crystal structure of cobalt-incorporated human 2-aminoethanethiol (aka cysteamine) dioxygenase (ADO) variant C18S/C239S in complex with CP6-L8K-Ser
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-10-11
Authors: Jiramongkol, Y., Patel, K., White, M.D.
PDB entry 9dxw: The crystal structure of F182A CYP199A4 bound to 4-t-butylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-10-11
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dxx: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with D-peptide
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1)); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2024-10-12
Authors: Kadam, R.U., Wilson, I.A.
PDB entry 9dy3: Crystal Structure of C4-Dicarboxylate-Binding Periplasmic Protein (PA5167) of Tripartite ATP-independent Periplasmic Transporter Family from Pseudomonas aeruginosa PAO1 in Complex with L-Malate
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-10-12
Authors: Minasov, G., Shukla, S., Shuvalova, L., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dy4: Crystal structure of iron-bound human ADO C18S/C239S variant soaked in hydralazine at 2.39 Angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-10-13
Authors: Liu, A., Li, J.
PDB entry 9dy5: The crystal structure of F182A CYP199A4 bound to 4-methylthiobenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-10-13
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dy7: Proteus vulgaris tryptophan indole-lyase complexed with L-ethionine and Na+
Classification: LYASE
Source organism: Proteus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-10-13
Authors: Phillips, R.S.
PDB entry 9dy8: Crystal structure of HLA-B*18:01 in complex with PEMTFFSVK, an 9-mer epitope from Influenza B
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-10-13
Authors: Murdolo, L.D., Maddumage, J.C., Gras, S.
PDB entry 9dy9: The crystal structure of F182A CYP199A4 bound to 4-methoxybenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.672 Å
Deposited: 2024-10-13
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dya: CHIP-TPR in complex with the Hsp70 tail
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-10-13
Authors: Zhang, H., Nix, J.C., Page, R.C.
PDB entry 9dyb: CHIP-TPR in complex with the phosphorylated Hsp70 tail
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-10-13
Authors: Zhang, H., Nix, J.C., Page, R.C.
PDB entry 9dyc: The crystal structure of F182A CYP199A4 bound to 4-ethylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-10-13
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dyd: Asenapine-bound serotonin 1A (5-HT1A) receptor-Goa protein complex
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-10-14
Authors: Warren, A.L., Zilberg, G., Wacker, D.
PDB entry 9dye: Buspirone-bound serotonin 1A (5-HT1A) receptor-Goa protein complex
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-14
Authors: Warren, A.L., Zilberg, G., Wacker, D.
PDB entry 9dyf: Asenapine-bound serotonin 1A (5-HT1A) receptor-Gi1 protein complex
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-10-14
Authors: Warren, A.L., Zilberg, G., Wacker, D.
PDB entry 9dyg: iSAT-PNA-RA20, RA20-B-c class
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.27 Å
Deposited: 2024-10-14
Authors: Sheng, K., Dong, X., Lee, J.
PDB entry 9dyh: BEST2 + glutamate open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-10-14
Authors: Owji, A.P., Kittredge, A., Zhang, Y., Yang, T.
PDB entry 9dyi: BEST2 + glutamate closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-10-14
Authors: Owji, A.P., Kittredge, A., Zhang, Y., Yang, T.
PDB entry 9dyj: BEST2 + GABA open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2024-10-14
Authors: Owji, A.P., Kittredge, A.K., Zhang, Y., Yang, T.
PDB entry 9dyk: BEST2 + GABA closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2024-10-14
Authors: Owji, A.P., Kittredge, A., Zhang, Y., Yang, T.
PDB entry 9dyl: BEST1 + PABA open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-10-14
Authors: Owji, A.P., Kittredge, A., Zhang, Y., Yang, T.
PDB entry 9dym: BEST1 + PABA intermediate state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-10-14
Authors: Owji, A.P., Kittredge, A., Zhang, Y., Yang, T.
PDB entry 9dyn: BEST2 + PABA open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2024-10-14
Authors: Owji, A.P., Kittredge, A., Zhang, Y., Yang, T.
PDB entry 9dyo: BEST2 + PABA closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-10-14
Authors: Owji, A.P., Kittredge, A., Zhang, Y., Yang, T.
PDB entry 9dyp: Crystal Structure of Rubisco from Methanococcoides burtonii
Classification: LIGASE
Source organism: Methanococcoides burtonii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-10-14
Authors: Pereira, J.H., Liu, A.K., Shih, P.M., Adams, P.D.
PDB entry 9dyq: Crystal structure of human dysferlin C2G domain
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-10-14
Authors: Dominguez, M.J., Sutton, R.B.
PDB entry 9dyr: Crystal Structure of Rubisco in complex with CABP from Methanococcoides burtonii
Classification: LIGASE
Source organism: Methanococcoides burtonii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2024-10-14
Authors: Pereira, J.H., Liu, A.K., Shih, P.M., Adams, P.D.
PDB entry 9dys: X-ray Crystallographic Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 at Room Temperature bound to tetraethylene glycol
Classification: HYDROLASE
Source organism: Alphaproteobacteria bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-10-14
Authors: Capra, N., Meilleur, F.
PDB entry 9dyt: Acanthamoeba Polyphaga Mimivirus R699
Classification: VIRAL PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-14
Authors: Richards, S.J., Buhlheller, C., Kim, J.S., Chen, T., Wu, J., Guo, H.
PDB entry 9dyu: Assembly and functional mechanisms of the Hsp70-Hsp40 chaperone machinery
Classification: STRUCTURAL PROTEIN
Source organism: Thermus thermophilus
Experimental method: SOLUTION NMR
Deposited: 2024-10-14
Authors: Jiang, Y., Ibrahim, Z., Xia, Y., Kalodimos, C.G.
PDB entry 9dyv: Assembly and functional mechanisms of the Hsp70-Hsp40 chaperone machinery
Classification: STRUCTURAL PROTEIN
Source organism: Thermus thermophilus
Experimental method: SOLUTION NMR
Deposited: 2024-10-14
Authors: Jiang, Y., Ibrahim, Z., Xia, Y., Kalodimos, C.G.
PDB entry 9dyw: racemic mixture of peptide VVGGVV forms rippled sheets
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-10-15
Authors: Sawaya, M.R., Raskatov, J.A., Hazari, A.
PDB entry 9dyx: racemic mixture of peptide VVGGVV forms rippled sheets
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-10-15
Authors: Sawaya, M.R., Raskatov, J.A., Hazari, A.
PDB entry 9dyy: peptide of mixed chirality, VVGG(DVA)(DVA), assembles into a rippled beta sheet
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-10-15
Authors: Sawaya, M.R., Raskatov, J.A., Hazari, A.
PDB entry 9dyz: VVGG(DVA)(DVA)GG, a cyclic peptide of mixed chirality
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.101 Å
Deposited: 2024-10-15
Authors: Sawaya, M.R., Raskatov, J.A., Hazari, A.
PDB entry 9dz0: FKFGG(DPN)(DGL)(DPN)GG, a cyclic peptide with mixed chirality
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-10-15
Authors: Sawaya, M.R., Raskatov, J.A., Hazari, A.
PDB entry 9dz1: VVGGVVGG cyclic peptide
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.102 Å
Deposited: 2024-10-15
Authors: Sawaya, M.R., Raskatov, J.A., Hazari, A.
PDB entry 9dz2: Cryo-EM structure of Sudan ebolavirus glycoprotein complexed with hNPC1-C
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Sudan ebolavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-10-15
Authors: Bu, F., Ye, G., Liu, B., Li, F.
PDB entry 9dz3: Photoactivation in Bacteriophytochromes, reference (dark) structure for the 3 ps time point
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-10-15
Authors: Malla, T.N., Stojkovic, E.A., Schmidt, M.
PDB entry 9dz4: Cryo-EM Structure of Receptor Tyrosine Kinase ROS1 in Complex with Fab-CT4
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-10-15
Authors: Li, H., Klein, D.
PDB entry 9dz5: Crystal structure of integrin beta-2 tail bound to the FERM-folded talin head domain with a D397R mutation
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-10-15
Authors: Wu, J., Gao, T.
PDB entry 9dz6: Cryo-EM structure of yeast Exportin Msn5 bound to RanGTP and Pho4 (not modeled) (State 3-1)
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-10-15
Authors: Fung, H.Y.J., Chook, Y.M.
PDB entry 9dz7: Structure of ALAS bound to glycine from S. cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.487 Å
Deposited: 2024-10-15
Authors: Tran, J.U., Brown, B.L.