LiteFold/PDB huggingface dataset:
PDB entry 9l6k: Crystal structure of nucleotide-free human kinesin-1 motor domain (G234V mutant)
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-12-24
Authors: Makino, T., Miyazono, K., Tanokura, M., Tomishige, M.
PDB entry 9l6m: Crystal Structure of BRD2 BD1 domain in complex with small molecule inhibitor Isoxazole azepine compound.
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-12-24
Authors: Jwala, N., Vijayshankar, N., Thomas, A., NarasimhaRao, K.
PDB entry 9l6n: PEDV 3CLpro mutant (C144A) in complex with nsp5/6 peptite substrate
Classification: VIRAL PROTEIN
Source organism: Porcine epidemic diarrhea virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-12-24
Authors: Zhang, Y., Zhang, D., Shi, Y.J., Peng, G.Q.
PDB entry 9l6q: Vitamin K-dependent gamma-carboxylase in complex with Coagulation factor IX and vitamin K
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-12-25
Authors: Hang, J., Chen, D.D., Zhong, Q.H.
PDB entry 9l6r: double-mutant (K217A & K218A) Vitamin K-dependent gamma-carboxylase in complex with Coagulation factor IX and vitamin K
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-12-25
Authors: Hang, J., Chen, D.D., Zhong, Q.H.
PDB entry 9l6s: double-mutant (K217A & K218A) Vitamin K-dependent gamma-carboxylase in complex with coagulation factors X and vitamin K
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-12-25
Authors: Hang, J., Chen, D.D., Zhong, Q.H.
PDB entry 9l6w: Hexamer Msp1 from S.cerevisiae(with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-12-25
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9l6x: Crystal structure of the L7Ae derivative protein LS4 in complex with its co-evolved target CS1 RNA
Classification: RNA BINDING PROTEIN
Source organism: Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-12-25
Authors: Teramoto, T., Nakashima, M., Fukunaga, K., Yokobayashi, Y., Kakuta, Y.
PDB entry 9l6y: Crystal structure of the L7Ae derivative protein LS12 in complex with its co-evolved target CS2 RNA
Classification: RNA BINDING PROTEIN
Source organism: Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2024-12-25
Authors: Teramoto, T., Nakashima, M., Fukunaga, K., Yokobayashi, Y., Kakuta, Y.
PDB entry 9l6z: Crystal structure of the L7Ae derivative protein LS12 in RNA-free state
Classification: RNA BINDING PROTEIN
Source organism: Archaeoglobus fulgidus DSM 4304
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-12-25
Authors: Teramoto, T., Nakashima, M., Fukunaga, K., Yokobayashi, Y., Kakuta, Y.
PDB entry 9l71: HEWL crystal soaked in buffer of pH12.0
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-12-25
Authors: Hosur, M.V.
PDB entry 9l74: Cryo-EM structure of the d16:1 S1P-bound S1PR3 and Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2024-12-25
Authors: Im, D., Asada, H., Iwata, S., Yamauchi, M., Hagiwara, M.
PDB entry 9l75: A novel PE hydrolase and its structural basis
Classification: HYDROLASE
Source organism: Vreelandella venusta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2024-12-25
Authors: Wang, Y.S., Sun, D.Y., Jia, H.H., Sun, Y.Z., Qiu, L.N.
PDB entry 9l76: Structures and mechanism of the nicotinamide nucleotide transhydrogenase from E. coli
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-12-25
Authors: Zhu, J., Zhang, K., Gennis, R.B., Li, J.
PDB entry 9l77: Serine Beta-Lactamase OXA-48 in complex with Dual MBL/SBL inhibitor B33
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-12-26
Authors: Li, G.-B., Liang, G.-Q.
PDB entry 9l78: Crystal structure of nucleotide-free human kinesin-1 motor domain (G234A mutant)
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2024-12-26
Authors: Makino, T., Miyazono, K., Tanokura, M., Tomishige, M.
PDB entry 9l79: Structure of GPR119-Gs complex bound to AR231453
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Lama glama; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-12-26
Authors: Sun, Q., He, G., Xu, X., Liu, X.
PDB entry 9l7a: Serine Beta-Lactamase OXA-48 in complex with Dual MBL/SBL inhibitor B32
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-12-26
Authors: Li, G.-B., Liang, G.-Q.
PDB entry 9l7b: PEDV 3CLpro mutant (C144A) in complex with nsp13/14 peptite substrate
Classification: VIRAL PROTEIN
Source organism: Porcine epidemic diarrhea virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-12-26
Authors: Zhang, Y., Zhang, D., Shi, Y.J., Peng, G.Q.
PDB entry 9l7c: Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 1)
Classification: ANTIVIRAL PROTEIN
Source organism: Archaeoglobus fulgidus DSM 4304; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-12-26
Authors: Ouchi, R., Numata, T.
PDB entry 9l7d: Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 2)
Classification: ANTIVIRAL PROTEIN
Source organism: Archaeoglobus fulgidus; Archaeoglobus fulgidus DSM 4304; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-12-26
Authors: Ouchi, R., Numata, T.
PDB entry 9l7e: Crystal structure of human kinesin-1 motor domain (G234A mutant) in complex with ADP
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-12-26
Authors: Makino, T., Miyazono, K., Tanokura, M., Tomishige, M.
PDB entry 9l7f: Metallo Beta-Lactamase VIM-2 in complex with Dual MBL/SBL inhibitor B34
Classification: HYDROLASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.498 Å
Deposited: 2024-12-27
Authors: Li, G.-B., Liang, G.-Q.
PDB entry 9l7l: Structure of the MATE family multidrug resistance transporter HvAACT1 from Hordeum vulgare in the outward-facing state
Classification: MEMBRANE PROTEIN
Source organism: Hordeum vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2024-12-26
Authors: Tran, N.T., Suga, M.
PDB entry 9l7m: Nucleotide-free kinesin-1 motor domain bound to the microtubule
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2024-12-26
Authors: Makino, T., Komori, Y., Yanagisawa, H., Tomishige, M., Kikkawa, M.
PDB entry 9l7n: PEDV 3CLpro mutant (C144A) in complex with nsp12/13 peptite substrate
Classification: VIRAL PROTEIN
Source organism: Porcine epidemic diarrhea virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2024-12-26
Authors: Zhang, Y., Zhang, D., Shi, Y.J., Peng, G.Q.
PDB entry 9l7p: Cryo-EM structure of retron Ec78 system complex
Classification: ANTIVIRAL PROTEIN/DNA/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-12-26
Authors: Liu, Z., Zhang, H.
PDB entry 9l7r: Crystal structure of P450cam-F87R mutant complex with (-)-ambroxide
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-12-27
Authors: Dong, S., Feng, Y.G.
PDB entry 9l7s: Crystal structure of P450 BM3 F87A/V78S mutant
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-12-27
Authors: Dong, S., Feng, Y.G.
PDB entry 9l7t: Crystal structure of P450 BM3 F87A/V78S mutant complex with (-)-Ambroxide
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-12-27
Authors: Dong, S., Feng, Y.G.
PDB entry 9l7u: Crystal structure of P450 BM3 F87A/V78S/L75N mutant complex with (-)-Ambroxide
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-12-27
Authors: Dong, S., Feng, Y.G.
PDB entry 9l7v: Crystal structure of P450 BM3 F87A/V78G mutant complex with (-)-Ambroxide
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-12-27
Authors: Dong, S., Feng, Y.G.
PDB entry 9l7w: Crystal structure of monkeypox virus A30/H2 sub-complex at pH 4.0
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2024-12-27
Authors: Lin, S., Jia, X.H., Lu, G.W.
PDB entry 9l80: Structure of GPR119-Gs complex bound to an allosteric modulator
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Lama glama; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-12-27
Authors: Sun, Q., He, G., Xu, X., Liu, X.
PDB entry 9l84: Structure of beta1-AR-Gs complex bound to epinephrine and an allosteric modulator
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Lama glama; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-12-27
Authors: Sun, Q., He, G., Xu, X., Liu, X.
PDB entry 9l85: Structure of fish TREX1
Classification: IMMUNE SYSTEM
Source organism: Labeo rohita
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l86: Structure of frog TREX1
Classification: IMMUNE SYSTEM
Source organism: Ranitomeya imitator
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l87: Structure of fish TREX1-DNA complex
Classification: IMMUNE SYSTEM/DNA
Source organism: Labeo rohita; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l88: Structure of human TREX1-DNA complex with K66R disease-associated mutation
Classification: IMMUNE SYSTEM/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l89: Structure of human TREX1-DNA complex with K160R disease-associated mutation
Classification: IMMUNE SYSTEM/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l8a: Structure of frog TREX2
Classification: IMMUNE SYSTEM
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l8b: Structure of fish TREX2
Classification: IMMUNE SYSTEM
Source organism: Cottoperca gobio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l8c: Structure of human TREX1-DNA complex
Classification: IMMUNE SYSTEM/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l8d: Structure of frog TREX1-DNA complex
Classification: IMMUNE SYSTEM/DNA
Source organism: Ranitomeya imitator; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2024-12-27
Authors: Zhu, J., Wang, L., Lin, C., Zhou, W.
PDB entry 9l8e: Structure of Gh-TDH with Additional N-Terminus in Complex with Double-Stranded DNA Containing a 2-Nucleotide 5' Overhang
Classification: TOXIN
Source organism: Grimontia hollisae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2024-12-27
Authors: Hsiao, P.Y., Wu, T.K., Chang, C.Y.
PDB entry 9l8g: R115A mutant of Ferredoxin-NADP+ reductase from maize root - Oxidized form, low X-ray dose
Classification: OXIDOREDUCTASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-12-27
Authors: Uenaka, M., Ohnishi, Y., Tanaka, H., Kurisu, G.
PDB entry 9l8h: The structure of HitB-HitD complex with a C4 pantetheine cross-linking probe
Classification: LIGASE
Source organism: Embleya scabrispora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-12-27
Authors: Miyanaga, A., Nagata, K., Chisuga, T., Kudo, F., Eguchi, T.
PDB entry 9l8i: Rhodothermus marines cellobiose 2-epimerase RmCE in complex with mannobiose
Classification: ISOMERASE
Source organism: Rhodothermus marinus JCM 9785
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-12-27
Authors: Saburi, W., Muto, H., Jaito, N., Kato, K., Yu, J., Yao, M., Mori, H.
PDB entry 9l8j: Crystal structure of a putative phosphate binding protein from Synechocystis sp. PCC 6803 reveals an evolutionary hotspot
Classification: PROTEIN TRANSPORT
Source organism: Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2024-12-27
Authors: Wang, C.Y., Ma, H.L., Lu, Y.P.
PDB entry 9l8k: Rhodothermus marines cellobiose 2-epimerase RmCE in complex with mannobiitol
Classification: ISOMERASE
Source organism: Rhodothermus marinus JCM 9785
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-12-27
Authors: Saburi, W., Muto, H., Jaito, N., Kato, K., Yu, J., Yao, M., Mori, H.
PDB entry 9l8l: Structure of GPCR megacomplex bound to agonists
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-12-27
Authors: He, G., Sun, Q., Liu, X.
PDB entry 9l8m: Structure of SID-1 in complex with dsRNA
Classification: MEMBRANE PROTEIN/RNA
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-12-27
Authors: Kumazaki, K., Kusakizako, T., Nishizawa, T., Nureki, O.
PDB entry 9l8n: Structure of SID-1
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-12-27
Authors: Kumazaki, K., Kusakizako, T., Nishizawa, T., Nureki, O.
PDB entry 9l8o: Structure of SID-1 in complex with dsRNA (dodecameric form)
Classification: MEMBRANE PROTEIN/RNA
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2024-12-27
Authors: Murakoshi, S., Kumazaki, K., Kusakizako, T., Nureki, O.
PDB entry 9l8p: in situ structure of mtHsp60-Hsp10
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.3 Å
Deposited: 2024-12-27
Authors: Jung, M., Roh, S.
PDB entry 9l8q: Crystal Structures of Keap1-B4 complexes
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-12-28
Authors: Zhuang, C.L., Yu, R.Z.
PDB entry 9l8r: Dihydroxyacid dehydratase (DHAD)
Classification: LYASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2024-12-28
Authors: Zhou, J., Liu, D.
PDB entry 9l8t: The apo structure (State 1) of African Swine Fever Virus DNA polymerase
Classification: DNA BINDING PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-12-28
Authors: Hu, Z., Yan, R.
PDB entry 9l8u: Cryo-EM structure of ASFV DNA polymerase in a DNA replication state
Classification: DNA BINDING PROTEIN/DNA
Source organism: Asfarviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-12-28
Authors: Hu, Z., Yan, R.
PDB entry 9l8v: PyrN C-terminl domain in complex with L-glutamyl-sulfamoyl-adenosine (GSA)
Classification: LIGASE
Source organism: Streptomyces candidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2024-12-28
Authors: Du, Y.L., Zhao, G.
PDB entry 9l8w: Human KCNQ2-CaM in complex with QO-58
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-12-28
Authors: Zhao, Y.W., Yang, Z.N., Du, X.N., Guo, J.T.
PDB entry 9l8x: The crystal structure of Halogenases XhnO11 complex with vanadate
Classification: OXIDOREDUCTASE
Source organism: Streptomyces xinghaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.40005 Å
Deposited: 2024-12-28
Authors: Wu, L., Fang, S.Q., Nie, Q.Y., Tang, G.L.
PDB entry 9l8y: Crystal structure of HERC2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-12-28
Authors: Liu, H.B., Pan, L.F.
PDB entry 9l8z: The complex structure of antibody CF22 bound to the hemagglutinin of influenza B virus
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza B virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.448 Å
Deposited: 2024-12-28
Authors: Ge, J.W., Fan, M., Zhao, M.
PDB entry 9l90: The crystal structure of human RyR3 Repeat12 domain in complex with Dantrolene and AMP-PCP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2024-12-28
Authors: Hadiatullah, H., Lin, L., Yuchi, Z.
PDB entry 9l91: The crystal structure of human RyR3 Repeat12 domain in complex with Azumolene and AMP-PCP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-12-29
Authors: Hadiatullah, H., Lin, L., Yuchi, Z.
PDB entry 9l92: The crystal structure of human RyR3 Repeat12 domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-12-29
Authors: Hadiatullah, H., Lin, L., Yuchi, Z.
PDB entry 9l93: Crystal structure of NCOA4 in complex with HERC2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-12-29
Authors: Liu, H.B., Pan, L.F.
PDB entry 9l99: Structure of Western equine encephalitis virus McMillan strain in complex with VLDLR LA1-2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-12-29
Authors: Ma, B., Cao, Z., Ding, W., Zhang, X., Xiang, Y., Cao, D.
PDB entry 9l9a: Structure of Western equine encephalitis virus McMillan strain in complex with VLDLR LA2-3
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-12-29
Authors: Ma, B., Cao, Z., Ding, W., Zhang, X., Xiang, Y., Cao, D.
PDB entry 9l9b: The crystal structure of human RyR3 Repeat12 domain in complex with Dantrolene and ADP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2024-12-29
Authors: Hadiatullah, H., Lin, L., Yuchi, Z.
PDB entry 9l9d: Bacillus subtilis endospore crust protein CgeA
Classification: STRUCTURAL PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-12-30
Authors: Park, M., Kim, D., Baek, Y., Hyun, J., Ha, N.C.
PDB entry 9l9g: Crystal structure of L-threonine aldolase N18S/Q39R/Y319L triple mutant in complex with glycine from Neptunomonas marina
Classification: LYASE
Source organism: Neptunomonas marina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2024-12-30
Authors: Wu, J.Y., Liu, T.H., Yan, W.P., Feng, Y.
PDB entry 9l9h: Hexamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-12-30
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9l9i: Crystal structure of ARMS 1-4 ARs in complex with GABARAP
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-12-30
Authors: Jiang, W.L., Chen, J.S., Wang, C.
PDB entry 9l9m: Structure of Gh-TDH in Complex with 10-nt match Double-Stranded DNA
Classification: TOXIN
Source organism: Grimontia hollisae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-12-30
Authors: Hsiao, P.Y., Wu, T.K., Chang, C.Y.
PDB entry 9l9o: Cryo-EM structure of apo GPR50 with BRIL fusion, anti-BRIL Fab, and anti-Fab Nb complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-12-30
Authors: Shin, J., Cho, Y.
PDB entry 9l9p: Cryo-EM structure of bacteriophage T1 tail tip complex
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-12-30
Authors: Chen, Y., Liu, H.R.
PDB entry 9l9r: Room-temperature structure of lysozyme determined by serial synchrotron crystallography
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-12-31
Authors: Nam, K.H.
PDB entry 9l9s: The crystal structure of UG15
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.305 Å
Deposited: 2024-12-31
Authors: Chen, Q., Yu, Y., Jia, T.
PDB entry 9l9t: Crystal structure of a coronaviral M protein in complex with a C-terminal peptide of the N protein
Classification: MEMBRANE PROTEIN
Source organism: Pipistrellus bat coronavirus HKU5; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.142 Å
Deposited: 2024-12-31
Authors: Wang, X., Sun, Z., Zhou, X.
PDB entry 9l9u: Arabidopsis GORK WT1
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-12-31
Authors: Yamanashi, T., Kume, T., Sekido, N., Muraoka, Y., Yokoyama, T., Tanaka, Y., Uozumi, N.
PDB entry 9l9w: Structure of SPARTA in complex with guide DNA and a 19nt target DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 5.87 Å
Deposited: 2024-12-31
Authors: Hu, R., Guo, C., Liu, X., Chen, J., Liu, L.
PDB entry 9l9x: Structure of SPARTA in complex with guide DNA and a 20nt target DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 6.7 Å
Deposited: 2024-12-31
Authors: Hu, R., Guo, C., Liu, X., Chen, J., Liu, L.
PDB entry 9l9y: Immune complex of HEV E2s and mAb 6H8
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Hepatitis E virus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2024-12-31
Authors: Zimin, T., Guiping, W., Hai, Y., Qing, Z., Zizheng, Z., Ningshao, X., Shaowei, L.
PDB entry 9l9z: Fab of anti-HEV mAb 6H8
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-12-31
Authors: Zimin, T., Guiping, W., Hai, Y., Qing, Z., Zizheng, Z., Ningshao, X., Shaowei, L.
PDB entry 9la0: Arabidopsis GORK WT5
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-01-01
Authors: Yamanashi, T., Kume, T., Sekido, N., Muraoka, Y., Yokoyama, T., Tanaka, Y., Uozumi, N.
PDB entry 9la1: Arabidopsis GORK WT4
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-01-01
Authors: Yamanashi, T., Kume, T., Sekido, N., Muraoka, Y., Yokoyama, T., Tanaka, Y., Uozumi, N.
PDB entry 9la2: Arabidopsis GORK WT2
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-01-01
Authors: Yamanashi, T., Kume, T., Sekido, N., Muraoka, Y., Yokoyama, T., Tanaka, Y., Uozumi, N.
PDB entry 9la3: Arabidopsis GORK WT3
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-01-01
Authors: Yamanashi, T., Kume, T., Sekido, N., Muraoka, Y., Yokoyama, T., Tanaka, Y., Uozumi, N.
PDB entry 9la6: Crystal structure of anti-CRISPR protein AcrIE7
Classification: UNKNOWN FUNCTION
Source organism: Streptococcus macedonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-01-01
Authors: Zhang, H., Liu, Z.
PDB entry 9la7: Arabidopsis GORK consensus structure
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2025-01-01
Authors: Yamanashi, T., Kume, T., Sekido, N., Muraoka, Y., Yokoyama, T., Tanaka, Y., Uozumi, N.
PDB entry 9la8: Comparative analysis of functions and catalytic mechanisms of methyltransferases involved in anthracycline biosynthesis
Classification: TRANSFERASE
Source organism: Streptomyces coeruleorubidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-01-01
Authors: Yang, Q.Y., Sang, M.L., Zhang, W.
PDB entry 9la9: Munc13-4-Rab27a complex with GppNHp
Classification: EXOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.38 Å
Deposited: 2025-01-02
Authors: Zheng, X., Liu, C.Q., Wang, S., Guan, J.L., He, J., Ma, C.
PDB entry 9laa: Cryo-EM structure of Shewanella oneidensis MR-1 PilA pili.
Classification: STRUCTURAL PROTEIN
Source organism: Shewanella oneidensis MR-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2025-01-02
Authors: Li, D.N., Liu, C.
PDB entry 9lab: Cryo-EM structure of Shewanella oneidensis MR-1 MshA pili.
Classification: CELL ADHESION
Source organism: Shewanella oneidensis MR-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-01-02
Authors: Li, D.N., Liu, C.
PDB entry 9lac: Comparative analysis of functions and catalytic mechanisms of methyltransferases involved in anthracycline biosynthesis
Classification: TRANSFERASE
Source organism: Streptomyces coeruleorubidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-02
Authors: Yang, Q.Y., Sang, M.L., Zhang, W.
PDB entry 9lad: Crystal structure of the complex between Neuronal Pentraxin 2 (NP2 PTX) and antibody fragment VHH N1
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-01-02
Authors: Caaveiro, J.M.M., Yokoo, T., Tsumoto, K.
PDB entry 9lae: Locally refined region of SARS-CoV-2 spike in complex with antibodies 9G11 and 3E2.
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-01-02
Authors: Jiang, Y., Sun, H., Zheng, Q., Li, S.
PDB entry 9laf: Crystal structure of Elongin BC-EPOP peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-01-02
Authors: Kim, S., Lee, B.I.
PDB entry 9lag: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in iiiii conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-01-02
Authors: Li, Z., Bharambe, N., Basak, S.
PDB entry 9lah: Cryo-EM structure of Shewanella oneidensis MR-1 flagella.
Classification: PROTEIN FIBRIL
Source organism: Shewanella oneidensis MR-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-01-02
Authors: Li, D.N., Liu, C.
PDB entry 9lai: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in iiiio conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-01-02
Authors: Li, Z., Bharambe, N., Basak, S.
PDB entry 9laj: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in iiioo conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-01-02
Authors: Li, Z., Bharambe, N., Basak, S.
PDB entry 9lak: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in iiooo conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-01-02
Authors: Li, Z., Bharambe, N., Basak, S.
PDB entry 9lay: Cryo-EM structure of the apo-form succinate dehydrogenase from Chloroflexus aurantiacus
Classification: MEMBRANE PROTEIN
Source organism: Chloroflexus aurantiacus J-10-fl
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-01-02
Authors: Zhang, X., Wu, J.Y., Xu, X.L.
PDB entry 9laz: Cryo-EM structure of the lipid-bound succiante dehydrogenase from Chloroflexus aurantiacus
Classification: MEMBRANE PROTEIN
Source organism: Chloroflexus aurantiacus J-10-fl
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-01-02
Authors: Zhang, X., Wu, J.Y., Xu, X.L.
PDB entry 9lb0: Cryo-EM structure of the MK7-bound succinate dehydrogenase from Chloroflexus aurantiacus
Classification: MEMBRANE PROTEIN
Source organism: Chloroflexus aurantiacus J-10-fl
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-01-02
Authors: Zhang, X., Wu, J.Y., Xu, X.L.
PDB entry 9lb1: Cryo-EM structure of the MK4-bound succinate dehydrogenase from Chloroflexus aurantiacus
Classification: MEMBRANE PROTEIN
Source organism: Chloroflexus aurantiacus J-10-fl
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-01-02
Authors: Zhang, X., Wu, J.Y., Xu, X.L.
PDB entry 9lb2: E2s domain of HEV ORF2 type 4
Classification: VIRAL PROTEIN
Source organism: Hepatitis E virus genotype 1 (isolate Human/Burma)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-01-03
Authors: Zimin, T., Guiping, W., Hai, Y., Qing, Z., Zizheng, Z., Ningshao, X., Shaowei, L.
PDB entry 9lb3: mutant N490G/M492V of E2s domain of HEV-4 ORF2
Classification: VIRAL PROTEIN
Source organism: Paslahepevirus balayani
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2025-01-03
Authors: Zimin, T., Guiping, W., Hai, Y., Qing, Z., Zizheng, Z., Ningshao, X., Shaowei, L.
PDB entry 9lb4: mutant G490N/V492M of HEV-1 E2s domain
Classification: VIRAL PROTEIN
Source organism: Hepatitis E virus genotype 1 (isolate Human/Burma)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.303 Å
Deposited: 2025-01-03
Authors: Zimin, T., Guiping, W., Hai, Y., Qing, Z., Zizheng, Z., Ningshao, X., Shaowei, L.
PDB entry 9lb5: mutant S483T/G490N/V492M/S497T/A599G of HEV-1 E2s domain
Classification: VIRAL PROTEIN
Source organism: Hepatitis E virus genotype 1 (isolate Human/Burma)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-01-03
Authors: Zimin, T., Guiping, W., Hai, Y., Qing, Z., Zizheng, Z., Ningshao, X., Shaowei, L.
PDB entry 9lb6: Crystal structure of trehalose 6-phosphate phosphatase Weissella ceti
Classification: HYDROLASE
Source organism: Weissella ceti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-01-03
Authors: Feng, Y., Xue, S.
PDB entry 9lb7: Crystal structure of trehalose-6-phosphate phosphorylase from Weissella ceti in complex with beta-Glc1P
Classification: HYDROLASE
Source organism: Weissella ceti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-01-03
Authors: Feng, Y., Xue, S.
PDB entry 9lb9: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in ioooo conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-01-03
Authors: Li, Z., Bharambe, N., Basak, S.
PDB entry 9lba: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in ooooo conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-01-03
Authors: Li, Z., Bharambe, N., Basak, S.
PDB entry 9lbb: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in iioio conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-01-03
Authors: Li, Z., Bharambe, N., Basak, S.
PDB entry 9lbc: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in ioioo conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-01-03
Authors: Li, Z., Bharambe, N., Basak, S.
PDB entry 9lbd: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC F116A mutant at pH 2.5
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2025-01-03
Authors: Li, Z., Basak, S.
PDB entry 9lbe: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC Y251A mutant at pH 2.5 in ioooo conformation
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-01-03
Authors: Li, Z., Basak, S.
PDB entry 9lbf: The crystal structure of the truncated PAK2 containing D368N mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2025-01-03
Authors: Hu, H.-F., Luo, Z.P., Wu, J.-W., Wang, Z.-X.
PDB entry 9lbg: The crystal structure of the truncated PAK2 containing K278R mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2025-01-03
Authors: Hu, H.-F., Luo, Z.P., Wu, J.-W., Wang, Z.-X.
PDB entry 9lbm: Cryo-EM structure of bacteriophage phiXacJX1 capsid
Classification: VIRUS
Source organism: Xanthomonas phage phiXacJX1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-01-03
Authors: Guo, M., Wang, A., Zheng, Y., Liu, C., Shao, Q., Fang, Q.
PDB entry 9lbn: The composite cryo-EM structure of the head-to-tail connector and head-proximal tail components of bacteriophage phiXacJX1
Classification: VIRUS
Source organism: Xanthomonas phage phiXacJX1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-01-03
Authors: Guo, M., Wang, A., Zheng, Y., Liu, C., Shao, Q., Fang, Q.
PDB entry 9lbr: Response regulator RR468 mutant M56A
Classification: SIGNALING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: SOLUTION NMR
Deposited: 2025-01-03
Authors: Liu, X., Wang, D., Liu, Y., Jiang, L.
PDB entry 9lbs: Cryo-EM structure of Omicron BA.1 RBD complexed with ConBA-998,S309 and S304Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-01-03
Authors: Zhang, Z., Ju, B., Liu, C.
PDB entry 9lbt: DPPIV-VAMP
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-01-03
Authors: Chen, H.H., Xing, X.H.
PDB entry 9lbv: Pseudomonas aeruginosa Histidinol dehydrogenase with ADPP
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-01-03
Authors: Choudhury, G.B., Chatterjee, R., Datta, S.
PDB entry 9lbw: HBcAg in complex with Fab mAb40
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Hepatitis B virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2025-01-03
Authors: Chen, S.L.
PDB entry 9lby: Crystal Structure of Maize Lipoxygenase3
Classification: OXIDOREDUCTASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-01-03
Authors: Zhang, X.
PDB entry 9lbz: unique-vertex of mature phage N4
Classification: VIRAL PROTEIN
Source organism: Escherichia phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-01-03
Authors: Liu, H., Chen, W.
PDB entry 9lc0: tail complex of mature phage N4
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-01-03
Authors: Liu, H., Chen, W.
PDB entry 9lc1: portal of mature phage N4
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-01-03
Authors: Liu, H., Chen, W.
PDB entry 9lc2: Crystal Structure of NFIA in Complex with DNA Containing the TGGCA(N3)TGCCA Motif
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-01-03
Authors: Zhu, C., Song, H.
PDB entry 9lc9: Crystal structure of mycothione reductase from Mycobacterium abscessus
Classification: OXIDOREDUCTASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.0008 Å
Deposited: 2025-01-03
Authors: Lin, W., Feng, Y.
PDB entry 9lck: Cryo-EM structure of influenza polymerase bound to cRNA promoter
Classification: VIRAL PROTEIN/RNA
Source organism: Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-01-04
Authors: Wu, Y.X., Liang, H.H.
PDB entry 9lcm: Grimontia hollisae thermostable direct hemolysin in complex with 6-nt blunt-ended dsDNA
Classification: TOXIN
Source organism: Grimontia hollisae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-01-04
Authors: Hsiao, P.Y., Wu, T.K., Chang, C.Y.
PDB entry 9lco: PvdL-PCP2-E2-C3-A3 in complex with MLP (NRPS cross-module)
Classification: LIGASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2025-01-05
Authors: Wei, C., Jialiang, W., Zhijun, W.
PDB entry 9lcp: PvdL-E2-C3-A3 in complex with MLP (NRPS cross-module)
Classification: LIGASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2025-01-05
Authors: Wei, C., Jialiang, W., Zhijun, W.
PDB entry 9lcq: PvdL-E2-C3-A3(R3393A) in complex with MLP (NRPS cross-module)
Classification: LIGASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2025-01-05
Authors: Wei, C., Jialiang, W., Zhijun, W.
PDB entry 9lcr: Clostridium botulinum OLE RNA dimer
Classification: RNA
Source organism: Clostridium botulinum A str. ATCC 19397
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-01-05
Authors: Jia, X.Y., Wang, L., Su, Z.M.
PDB entry 9lcs: Grimontia hollisae thermostable direct hemolysin in complex with 2-nt long 5'-overhang dsDNA
Classification: TOXIN
Source organism: Grimontia hollisae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.578 Å
Deposited: 2025-01-05
Authors: Hsiao, P.Y., Wu, T.K., Chang, C.Y.
PDB entry 9lcu: Grimontia hollisae thermostable direct hemolysin in complex with 1-nt long 3'-overhang dsDNA
Classification: TOXIN
Source organism: Grimontia hollisae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2025-01-05
Authors: Hsiao, P.Y., Wu, T.K., Chang, C.Y.
PDB entry 9lcw: Grimontia hollisae thermostable direct hemolysin K88A mutant in complex with 1-nt long 3'-overhang dsDNA
Classification: TOXIN
Source organism: Grimontia hollisae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7065 Å
Deposited: 2025-01-05
Authors: Hsiao, P.Y., Wu, T.K., Chang, C.Y.
PDB entry 9lcx: Inactive TOD6 with AC DNA substrate
Classification: DE NOVO PROTEIN
Source organism: Burkholderia cenocepacia; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-01-05
Authors: Mi, L., Lv, X.C., Lu, P.L.
PDB entry 9lcy: Inactivate TOD6 with TC DNA substrate
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-01-05
Authors: Lv, X.C., Mi, L., Lu, P.L.
PDB entry 9lcz: Inactivate TOD6 with GC DNA substrate
Classification: DE NOVO PROTEIN
Source organism: Xanthomonas; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-01-05
Authors: Lv, X.C., Mi, L., Lu, P.L.
PDB entry 9ld0: Inactivate TOD6 with CC DNA substrate
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-01-05
Authors: Lv, X.C., Mi, L., Lu, P.L.
PDB entry 9ld1: Inactivate TOD4 with TC DNA substrate
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2025-01-05
Authors: Lv, X.C., Mi, L., Lu, P.L.
PDB entry 9ld2: Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2025-01-05
Authors: Liu, Z.M., Bao, Z.H., Sun, X.Y., Sun, L.
PDB entry 9ld3: The complex structure of K63A/2',3',5'-P-A/ADPR
Classification: TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-01-05
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ld4: The Apo-form structure of TkoKptA
Classification: TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.61 Å
Deposited: 2025-01-05
Authors: Cao, X.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ld5: Crystal structure of LSSmOrange under cryogenic temperature at pH 8.0
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-01-05
Authors: Luo, F., De Zitter, E., Nango, E., Mizuno, H.
PDB entry 9ld6: The complex structure of TkoKptA/DNA/NAD+
Classification: TRANSFERASE/DNA
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-01-05
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ld7: The capsid of mature phage N4
Classification: VIRUS
Source organism: Enterobacteria phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-01-05
Authors: Liu, H., Chen, W.
PDB entry 9ld8: Crystal structure of LSSmOrange under room temperature at pH 8.0
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-01-05
Authors: Luo, F., De Zitter, E., Nango, E., Mizuno, H.
PDB entry 9ld9: Crystal structure of LSSmOrange under room temperature at pH 8.0, 250ps after pump laser, refined against 8.33 times extrapolated structure factor
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-01-05
Authors: De Zitter, E., Luo, F., Nango, E., Mizuno, H.
PDB entry 9lda: The complex structure of K63A/5'-p-ADPR-DNA
Classification: TRANSFERASE/DNA
Source organism: Thermococcus kodakarensis KOD1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-01-05
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ldb: DESIGN AND SYNTHESIS OF NEW ENZYMES BASED ON THE LACTATE DEHYDROGENASE FRAMEWORK
Classification: OXIDOREDUCTASE(CHOH(D)-NAD+(A))
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1991-11-26
Authors: Dunn, C.R., Holbrook, J.J., Muirhead, H.
PDB entry 9ldc: The structure of TkoKptA/DNA/ADPR complex-B*
Classification: TRANSFERASE/DNA
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-01-05
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ldd: The structure of TkoKptA/DNA/ADPR complex-A*
Classification: TRANSFERASE/DNA
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-01-05
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9lde: The complex structure of K63A/2'-p-ADPR-RNA
Classification: TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-01-05
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ldf: The structure of TkoKptA/DNA/Appr>P complex-A
Classification: TRANSFERASE/DNA
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-01-05
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ldg: The structure of TkoKptA/DNA/Appr>P complex-B
Classification: TRANSFERASE/DNA
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-01-06
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ldh: The complex structure of TkoKptA/2',3',5'-p-U
Classification: TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-01-06
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ldi: The complex structure of TkoKptA/2',3',5'-p-A
Classification: TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-01-06
Authors: Cao, C.L., Yang, J., Zhang, W.Z., Gan, J.H.
PDB entry 9ldj: Cryo-EM structure of SARS-CoV-2 wide-type S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.21 Å
Deposited: 2025-01-06
Authors: Liu, Z.M., Bao, Z.H., Sun, X.Y., Sun, L.
PDB entry 9ldk: The complex structure of Escherichia coli AdhE (compact conformation)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-01-06
Authors: Konno, N., Miyake, K., Nishino, S., Omae, K., Yanagisawa, H., Tsuru, S., Kikkawa, M., Furusawa, C., Iwasaki, W.