LiteFold/PDB huggingface dataset:
PDB entry 6z6y: Galectin-8 N-terminal domain in complex with a sulfatide mimicking a sphingolipid
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2020-05-29
Authors: Romero, A., Medrano, F.J.
PDB entry 6z6z: Crystal structure of an Anticalin directed towards colchicine without ligand
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2020-05-29
Authors: Skerra, A., Eichinger, A.
PDB entry 6z70: Structure of the MATE family multidrug resistance transporter Aq_128 from Aquifex aeolicus in the outward-facing state
Classification: MEMBRANE PROTEIN
Source organism: Aquifex aeolicus (strain VF5)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-05-29
Authors: Zhao, J., Safarian, S., Thielmann, Y., Xie, H., Wang, J., Michel, H.
PDB entry 6z71: Structure of the MATE family multidrug resistance transporter Aq_128 from Aquifex aeolicus in the outward-facing state
Classification: MEMBRANE PROTEIN
Source organism: Aquifex aeolicus (strain VF5)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2020-05-29
Authors: Zhao, J., Safarian, S., Thielmann, Y., Xie, H., Wang, J., Michel, H.
PDB entry 6z72: SARS-CoV-2 Macrodomain in complex with ADP-HPM
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-05-29
Authors: Zorzini, V., Rack, J., Ahel, I.
PDB entry 6z74: Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum
Classification: TRANSCRIPTION
Source organism: Agrobacterium fabrum (strain C58 / ATCC 33970)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-05-29
Authors: Morera, S., Vigouroux, V.
PDB entry 6z79: Variant Surface Glycoprotein VSGsur, I3C (""Magic Triangle"") derivative used for phasing of the structure and subsequently as a model for molecular replacement of native, mutants, and drug soaks.
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei rhodesiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2020-05-30
Authors: Zeelen, J.P., Straaten van, M., Stebbins, C.E.
PDB entry 6z7a: Variant Surface Glycoprotein VSGsur
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei rhodesiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2020-05-30
Authors: Zeelen, J.P., Straaten van, M., Stebbins, C.E., Hashemi, H.
PDB entry 6z7b: Variant Surface Glycoprotein VSGsur bound to suramin
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei rhodesiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2020-05-30
Authors: Zeelen, J.P., Straaten van, M., Stebbins, C.E., Jeffrey, P.
PDB entry 6z7c: Variant Surface Glycoprotein VSGsur mutant H122A
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei rhodesiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2020-05-30
Authors: Zeelen, J.P., Straaten van, M., Stebbins, C.E.
PDB entry 6z7d: Variant Surface Glycoprotein VSGsur mutant H122A soaked in 0.77 mM Suramin.
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei rhodesiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-05-30
Authors: Zeelen, J.P., Straaten van, M., Stebbins, C.E.
PDB entry 6z7e: Variant Surface Glycoprotein VSGsur mutant H122A soaked in 7.7 mM suramin
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei rhodesiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.663 Å
Deposited: 2020-05-30
Authors: Zeelen, J.P., Straaten van, M., Stebbins, C.E.
PDB entry 6z7f: C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-(2-(1H-imidazol-4-yl)ethyl)-4-acetamido-3-(benzyloxy)benzamide
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.605 Å
Deposited: 2020-05-30
Authors: Chung, C.
PDB entry 6z7g: N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH N-(2-(1H-imidazol-4-yl)ethyl)-4-acetamido-3-(benzyloxy)benzamide
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2020-05-30
Authors: Chung, C.
PDB entry 6z7h: Structure of CTX-M-15 E166Q mutant crystallised in the presence of enmetazobactam (AAI101)
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae IS53
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2020-05-31
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 6z7i: Crystal structure of CTX-M-15 E166Q mutant apoenzyme
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2020-05-31
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 6z7j: Structure of CTX-M-15 crystallised in the presence of enmetazobactam (AAI101)
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae IS53
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2020-05-31
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 6z7k: Crystal structure of CTX-M-15 in complex with the imine form of hydrolysed tazobactam
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2020-05-31
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 6z7l: N-TERMINAL BROMODOMAIN OF HUMAN BRD4 with GSK789
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.624 Å
Deposited: 2020-05-31
Authors: Chung, C.
PDB entry 6z7m: N-TERMINAL BROMODOMAIN OF HUMAN BRD4 (3R,4R)-N-cyclohexyl-4-((3-methyl-2-oxo-1,2-dihydro-1,7-naphthyridin-8-yl)amino)piperidine-3-carboxamide
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2020-05-31
Authors: Chung, C.
PDB entry 6z7n: The atomic structure of HAdV-F41 at pH 7.4
Classification: VIRUS
Source organism: Human adenovirus 41
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2020-05-31
Authors: Carlson, L.-A., Rafie, K.
PDB entry 6z7o: Crystal structure of Thioredoxin T from Drosophila melanogaster
Classification: NUCLEAR PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2020-05-31
Authors: Freier, R., Aragon, E., Baginski, B., Pluta, R., Martin-Malpartida, P., Torner, C., Gonzaez, C., Macias, M.
PDB entry 6z7p: Composite model of the Caulobacter crescentus S-layer bound to the O-antigen of lipopolysaccharide
Classification: STRUCTURAL PROTEIN
Source organism: Caulobacter vibrioides (strain ATCC 19089 / CB15)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2020-06-01
Authors: Bharat, T.A.M., von Kugelgen, A.
PDB entry 6z7q: The atomic structure of the HAdVF-41 penton base in solution
Classification: VIRAL PROTEIN
Source organism: Human adenovirus F serotype 41
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-06-01
Authors: Carlson, L.-A., Rafie, K.
PDB entry 6z7r: Structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris hildenborough pressurized with Krypton gas - structure wtKr1
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2020-06-01
Authors: Zacarias, S., Temporao, A., Carpentier, P., van der Linden, P., Pereira, I.A.C., Matias, P.M.
PDB entry 6z7t: Nucleotide-free Myosin-II motor domain
Classification: MOTOR PROTEIN
Source organism: Dictyostelium discoideum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2020-06-01
Authors: Ewert, W., Preller, M.
PDB entry 6z7u: Myosin-II motor domain complexed with blebbistatin in a new ADP-release conformation
Classification: MOTOR PROTEIN
Source organism: Dictyostelium discoideum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2020-06-01
Authors: Ewert, W., Preller, M.
PDB entry 6z7v: Crystal structure of Mindy2 (C266A) in complex with Lys48 linked di-ubiquitin (K48-Ub2)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2020-06-01
Authors: Abdul Rehman, S.A., Lange, S.M., Kulathu, Y.
PDB entry 6z7w: Human insulin in complex with the analytical antibody HUI-018 Fab
Classification: HORMONE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2020-06-02
Authors: Johansson, E.
PDB entry 6z7x: Insulin analytical antibody OXI-005 Fab
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-06-02
Authors: Johansson, E.
PDB entry 6z7y: Human insulin in complex with the analytical antibody OXI-005 Fab
Classification: HORMONE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-06-02
Authors: Johansson, E.
PDB entry 6z7z: Porcine insulin in complex with the analytical antibody OXI-005 Fab
Classification: HORMONE
Source organism: Mus musculus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-06-02
Authors: Johansson, E.
PDB entry 6z80: stimulatory human GTP cyclohydrolase I - GFRP complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-06-02
Authors: Ebenhoch, R., Nar, H., Vonck, J.
PDB entry 6z81: TsaBD bound to the inhibitor
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2020-06-02
Authors: Missoury, S., Van Tilbeurgh, H.
PDB entry 6z82: Thalictrum flavumn Norcoclaurine synthase point mutant in complex with a transition state analoge
Classification: LYASE
Source organism: Thalictrum flavum subsp. glaucum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-06-02
Authors: Roddan, R., Sula, A., Keep, N.H.
PDB entry 6z83: CK2 alpha bound to chemical probe SGC-CK2-1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.171 Å
Deposited: 2020-06-02
Authors: Kraemer, A., Wells, C., Drewry, D.H., Pickett, J.E., Axtman, A.D., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 6z84: CK2 alpha bound to chemical probe SGC-CK2-1 derivative
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-06-02
Authors: Kraemer, A., Wells, C., Drewry, D.H., Pickett, J.E., Axtman, A.D., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 6z85: inhibitory human GTP cyclohydrolase I - GFRP complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-06-02
Authors: Ebenhoch, R., Nar, H., Vonck, J.
PDB entry 6z86: human GTP cyclohydrolase I in complex with 7-deaza-GTP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.206 Å
Deposited: 2020-06-02
Authors: Ebenhoch, R., Nar, H.
PDB entry 6z87: human GTP cyclohydrolase I
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.564 Å
Deposited: 2020-06-02
Authors: Ebenhoch, R., Nar, H.
PDB entry 6z88: human GTP cyclohydrolase I in complex with allosteric inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.687 Å
Deposited: 2020-06-02
Authors: Ebenhoch, R., Nar, H.
PDB entry 6z89: human GTP cyclohydrolase I in complex with allosteric inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.366 Å
Deposited: 2020-06-02
Authors: Ebenhoch, R., Nar, H.
PDB entry 6z8a: Outer membrane FoxA in complex with nocardamine
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2020-06-02
Authors: Josts, I., Tidow, H.
PDB entry 6z8c: Crystal Structure of the Voltage-Gated Sodium Channel NavMs (F208L) in complex with N-desmethyltamoxifen (3.2 A resolution)
Classification: METAL TRANSPORT
Source organism: Magnetococcus marinus MC-1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-06-02
Authors: Sula, A., Hollingworth, D., Wallace, B.A.
PDB entry 6z8d: Human Picobirnavirus CP VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Human picobirnavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2020-06-02
Authors: Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.
PDB entry 6z8e: Human Picobirnavirus Ht-CP VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Human picobirnavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-06-02
Authors: Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.
PDB entry 6z8f: Human Picobirnavirus D45-CP VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Human picobirnavirus (strain Human/Thailand/Hy005102/-)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-06-02
Authors: Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.
PDB entry 6z8g: Crystal structure of VSG13 soaked in 0.5 M used to phase VSG13 to solve the structure.
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2020-06-02
Authors: Stebbins, C.E., Hempelmann, A., Van Straaten, M., Zeelen, J.
PDB entry 6z8h: Crystal structure of Variant Surface Glycoprotein VSG13
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2020-06-02
Authors: Stebbins, C.E., Hempelmann, A., Van Straaten, M., Zeelen, J.
PDB entry 6z8i: Fructo-oligosaccharide transporter BT 1762-63
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2020-06-02
Authors: van den Berg, B.
PDB entry 6z8j: Structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris hildenborough pressurized with Oxygen gas - structure wtO2
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.09 Å
Deposited: 2020-06-02
Authors: Zacarias, S., Temporao, A., Carpentier, P., van der Linden, P., Pereira, I.A.C., Matias, P.M.
PDB entry 6z8k: La Crosse virus polymerase at elongation mimicking stage
Classification: REPLICATION
Source organism: La Crosse orthobunyavirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2020-06-02
Authors: Arragain, B., Effantin, G., Schoehn, G., Cusack, S., Malet, H.
PDB entry 6z8l: Alpha-Amylase in complex with probe fragments
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-06-02
Authors: Adam, S., Koehnke, J.
PDB entry 6z8m: Structure of [NiFeSe] hydrogenase G491S variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491S-O2
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2020-06-02
Authors: Zacarias, S., Temporao, A., Carpentier, P., van der Linden, P., Pereira, I.A.C., Matias, P.M.
PDB entry 6z8n: Crystal structure of the neurotensin receptor 1 in complex with the small-molecule full agonist SRI-9829
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2020-06-02
Authors: Deluigi, M., Klipp, A., Hilge, M., Merklinger, L., Klenk, C., Plueckthun, A.
PDB entry 6z8o: Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Krypton gas - structure G491A-Kr
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-06-02
Authors: Zacarias, S., Temporao, A., Carpentier, P., van der Linden, P., Pereira, I.A.C., Matias, P.M.
PDB entry 6z8p: C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH GSK973
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-06-02
Authors: Chung, C.
PDB entry 6z8q: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2020-06-02
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z8r: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2020-06-02
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z8s: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2020-06-02
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z8t: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2020-06-02
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z8u: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2020-06-02
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z8v: X-ray structure of the complex between human alpha thrombin and a thrombin binding aptamer variant (TBA-3L), which contains 1-beta-D-lactopyranosyl residue in the side chain of Thy3 at N3.
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2020-06-02
Authors: Troisi, R., Timofeev, E.N., Sica, F.
PDB entry 6z8w: X-ray structure of the complex between human alpha thrombin and a thrombin binding aptamer variant (TBA-3G), which contains 1-beta-D-glucopyranosyl residue in the side chain of Thy3 at N3.
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2020-06-02
Authors: Troisi, R., Timofeev, E.N., Sica, F.
PDB entry 6z8x: X-ray structure of the complex between human alpha thrombin and a thrombin binding aptamer variant (TBA-3Leu), which contains leucyl amide in the side chain of Thy3 at N3.
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2020-06-02
Authors: Troisi, R., Timofeev, E.N., Sica, F.
PDB entry 6z8y: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2020-06-02
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z8z: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2020-06-02
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z90: Crystal structure of MINDY1 mutant-P138A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.59 Å
Deposited: 2020-06-03
Authors: Abdul Rehman, S.A., Kulathu, Y.
PDB entry 6z91: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-06-03
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z92: [4Fe-4S]-dependent thiouracil desulfidase TudS (DUF523Vcz) solved by Fe-SAD phasing
Classification: TRANSFERASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.067 Å
Deposited: 2020-06-03
Authors: Pecqueur, L., Zhou, J., Fontecave, M., Golinelli-Pimpaneau, B.
PDB entry 6z93: [4Fe-4S]-dependent thiouracil desulfidase TudS (DUF523Vcz)
Classification: TRANSFERASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.505 Å
Deposited: 2020-06-03
Authors: Pecqueur, L., Zhou, J., Fontecave, M., Golinelli-Pimpaneau, B.
PDB entry 6z94: [4Fe-4S]-dependent thiouracil desulfidase TudS (DUF523Vcz)(S-SAD data)
Classification: TRANSFERASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.759 Å
Deposited: 2020-06-03
Authors: Pecqueur, L., Zhou, J., Fontecave, M., Golinelli-Pimpaneau, B.
PDB entry 6z96: [4Fe-4S]-dependent thiouracil desulfidase TudS (DUF523Vcz) soaked with 4-thiouracil (12.65 keV, 7.125 keV (Fe-SAD) and 6.5 keV (S-SAD) data)
Classification: TRANSFERASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.327 Å
Deposited: 2020-06-03
Authors: Pecqueur, L., Zhou, J., Fontecave, M., Golinelli-Pimpaneau, B.
PDB entry 6z97: Structure of the prefusion SARS-CoV-2 spike glycoprotein
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-06-03
Authors: Duyvesteyn, H.M.E., Ren, J., Zhao, Y., Zhou, D., Huo, J., Carrique, L., Malinauskas, T., Ruza, R.R., Shah, P.N.M., Fry, E.E., Owens, R., Stuart, D.I.
PDB entry 6z98: NMR solution structure of the peach allergen Pru p 1.0101
Classification: ALLERGEN
Source organism: Prunus persica
Experimental method: SOLUTION NMR
Deposited: 2020-06-03
Authors: Eidelpes, R., Fuehrer, S., Hofer, F., Kamenik, A.S., Liedl, K.R., Tollinger, M.
PDB entry 6z99: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2020-06-03
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z9a: Fructo-oligosaccharide transporter BT 1762-63
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-06-03
Authors: van den Berg, B.
PDB entry 6z9b: Human Ecto-5'-nucleotidase (CD73) in complex with AOPCP derivative A830 (compound 16 in publication) in the closed form (crystal form III)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2020-06-03
Authors: Strater, N., Scaletti, E.
PDB entry 6z9c: Structure of human POLDIP2, a multifaceted adaptor protein in metabolism and genome stability
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-06-03
Authors: Kulik, A.A., Maruszczak, K., Nabi, N.L.M., Bingham, R.J., Cooper, C.D.O.
PDB entry 6z9d: Human Ecto-5'-nucleotidase (CD73) in complex with AOPCP derivative AB680 (compound 55 in publication) in the closed form (crystal form III)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-06-03
Authors: Strater, N.
PDB entry 6z9e: 1.55 A structure of human apoferritin obtained from data subset of Titan Mono-BCOR microscope
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.55 Å
Deposited: 2020-06-03
Authors: Yip, K.M., Fischer, N., Paknia, E., Chari, A., Stark, H.
PDB entry 6z9f: 1.56 A structure of human apoferritin obtained from data subset of Titan Mono-BCOR microscope
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.56 Å
Deposited: 2020-06-03
Authors: Yip, K.M., Fischer, N., Paknia, E., Chari, A., Stark, H.
PDB entry 6z9g: Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2020-06-03
Authors: Zacarias, S., Temporao, A., Carpentier, P., van der Linden, P., Pereira, I.A.C., Matias, P.M.
PDB entry 6z9h: Escherichia coli D-2-deoxyribose-5-phosphate aldolase - C47V/G204A/S239D mutant
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2020-06-04
Authors: Paakkonen, J., Hakulinen, N., Rouvinen, J.
PDB entry 6z9i: Escherichia coli D-2-deoxyribose-5-phosphate aldolase - N21K mutant complex with reaction products
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2020-06-04
Authors: Paakkonen, J., Hakulinen, N., Rouvinen, J.
PDB entry 6z9j: Escherichia coli D-2-deoxyribose-5-phosphate aldolase - N21K mutant
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-06-04
Authors: Paakkonen, J., Hakulinen, N., Rouvinen, J.
PDB entry 6z9k: CAP domain of Enterococcal PrgA
Classification: CELL ADHESION
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-06-04
Authors: Berntsson, R.P.A., Schmitt, A.
PDB entry 6z9l: Enterococcal PrgA
Classification: CELL ADHESION
Source organism: Enterococcus faecalis; Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.063 Å
Deposited: 2020-06-04
Authors: Berntsson, R.P.A., Schmitt, A.
PDB entry 6z9m: Pseudoatomic model of the pre-fusion conformation of glycoprotein B of Herpes simplex virus 1
Classification: VIRAL PROTEIN
Source organism: Human herpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.1 Å
Deposited: 2020-06-04
Authors: Vollmer, B., Prazak, V., Vasishtan, D., Jefferys, E.E., Hernandez-Duran, A., Vallbracht, M., Klupp, B., Mettenleiter, T.C., Backovic, M., Rey, F.A., Topf, M., Gruenewald, K.
PDB entry 6z9n: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2020-06-04
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z9o: Structure of [NiFeSe] hydrogenase G491S variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2-ld
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2020-06-04
Authors: Zacarias, S., Temporao, A., Carpentier, P., van der Linden, P., Pereira, I.A.C., Matias, P.M.
PDB entry 6z9p: Transcription termination intermediate complex 1
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-06-04
Authors: Said, N., Hilal, T., Loll, B., Wahl, M.C.
PDB entry 6z9q: Transcription termination intermediate complex 2
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2020-06-04
Authors: Said, N., Hilal, T., Loll, B., Wahl, M.C.
PDB entry 6z9r: Transcription termination intermediate complex 3
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2020-06-04
Authors: Said, N., Hilal, T., Loll, B., Wahl, M.C.
PDB entry 6z9s: Transcription termination intermediate complex 4
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2020-06-04
Authors: Said, N., Hilal, T., Loll, B., Wahl, M.C.
PDB entry 6z9t: Transcription termination intermediate complex 5
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2020-06-04
Authors: Said, N., Hilal, T., Loll, B., Wahl, M.C.
PDB entry 6z9u: Crystal structure of a TSEN15-34 heterodimer.
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.10002 Å
Deposited: 2020-06-04
Authors: Trowitzsch, S., Sekulovski, S.
PDB entry 6z9v: Human Class I Major Histocompatibility Complex, A02 allele, presenting IIGWMWIPV
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2020-06-04
Authors: Rizkallah, P.J., Man, S., Redman, J.E.
PDB entry 6z9w: Human Class I Major Histocompatibility Complex, A02 allele, presenting LLGWVFAQV
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-06-04
Authors: Rizkallah, P.J., Man, S., Redman, J.E.
PDB entry 6z9x: Human Class I Major Histocompatibility Complex, A02 allele, presenting LLS (t-butyl)Y FGTPT
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2020-06-04
Authors: Rizkallah, P.J., Man, S., Redman, J.E.
PDB entry 6z9y: Copper transporter OprC
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2020-06-04
Authors: Bhamidimarri, S.P., van den Berg, B.
PDB entry 6z9z: Atomic resolution X-ray structure of the Uridine phosphorylase from Vibrio cholerae on crystals grown under microgravity
Classification: TRANSFERASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2020-06-04
Authors: Eistrikh-Heller, P.A., Rubinsky, S.V., Samygina, V.R., Gabdulkhakov, A.G., Lashkov, A.A.
PDB entry 6za0: Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum (P21212 space group)
Classification: TRANSCRIPTION
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-06-04
Authors: Morera, S., Vigouroux, A., Legrand, P.
PDB entry 6za1: Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2-hd
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2020-06-04
Authors: Zacarias, S., Temporao, A., Carpentier, P., van der Linden, P., Pereira, I.A.C., Matias, P.M.
PDB entry 6za2: Crystal structure of dimeric latent PorU from Porphyromonas gingivalis
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis ATCC 33277
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2020-06-04
Authors: Gomis-Ruth, F.X., Goulas, T., Guevara, T., Rodriguez-Banqueri, A., Potempa, J., Sola, M.
PDB entry 6za3: Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (C2221 space group)
Classification: TRANSCRIPTION
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-06-04
Authors: Morera, S., Vigouroux, A., Legrand, P.
PDB entry 6za4: M. tuberculosis salicylate synthase MbtI in complex with 5-(3-cyanophenyl)furan-2-carboxylate
Classification: LYASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.092 Å
Deposited: 2020-06-04
Authors: Mori, M., Villa, S., Meneghetti, F., Bellinzoni, M.
PDB entry 6za5: M. tuberculosis salicylate synthase MbtI in complex with salicylate and Mg2+
Classification: LYASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.109 Å
Deposited: 2020-06-04
Authors: Mori, M., Villa, S., Meneghetti, F., Bellinzoni, M.
PDB entry 6za6: M. tuberculosis salicylate synthase MbtI in complex with Ba2+
Classification: LYASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.804 Å
Deposited: 2020-06-04
Authors: Mori, M., Villa, S., Meneghetti, F., Bellinzoni, M.
PDB entry 6za7: Structure of the apo transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum
Classification: TRANSCRIPTION
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2020-06-04
Authors: Morera, S., Vigouroux, A., Legrand, P.
PDB entry 6za8: Crystal structure of the neurotensin receptor 1 in complex with the small-molecule partial agonist RTI-3a
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2020-06-05
Authors: Deluigi, M., Klipp, A., Hilge, M., Merklinger, L., Klenk, C., Plueckthun, A.
PDB entry 6za9: Fo domain of Ovine ATP synthase
Classification: MEMBRANE PROTEIN
Source organism: Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2020-06-05
Authors: Pinke, G., Zhou, L., Sazanov, L.A.
PDB entry 6zaa: PI3K Delta in complex with methoxy(methylsulfamoyl)pyridinylN(methylpiperidinyl)dihydrobenzoxazinecarboxamide
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2020-06-05
Authors: Convery, M.A., Hardy, C.J., Spencer, J.A., Rowland, P.
PDB entry 6zab: Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (P6422 space group)
Classification: TRANSCRIPTION
Source organism: Agrobacterium fabrum (strain C58 / ATCC 33970); Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-06-05
Authors: Morera, S., Naretto, A., Vigouroux, A., Legrand, P.
PDB entry 6zac: PI3K Delta in complex with [(dimethylamino)methyldihydrobenzoxazin2methoxypyridinyl]methanesulfonamide
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-06-05
Authors: Convery, M.A., Hardy, C.J., Spencer, J.A., Rowland, P.
PDB entry 6zad: PI3K Delta in complex with methoxymethyloxathiatetraazatetracyclodocosahexaenedione
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2020-06-05
Authors: Convery, M.A., Hardy, C.J., Spencer, J.A., Rowland, P.
PDB entry 6zae: Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV under anaerobic conditions.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zaf: Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV after exposure to dioxygen for 400ms.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4001 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zag: Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV after exposure to dioxygen for 500ms.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4001 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zah: Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV after exposure to dioxygen for 800ms.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zai: Room temperature XFEL Isopenicillin N synthase structure in complex with Fe, O2 and ACV after exposure to dioxygen for 1600ms.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5501 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zaj: Room temperature XFEL Isopenicillin N synthase structure in complex with Fe, O2 and ACV after exposure to dioxygen for 3000ms.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5301 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zak: Room temperature XFEL Isopenicillin N synthase structure in complex with the Fe(IV)=O mimic VO and ACV.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zal: Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV after exposure to dioxygen for 500ms without glycerol.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zam: Fluorine labeled IPNS S55C in complex with Fe and ACV under anaerobic conditions.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zan: Isopenicillin N synthase in complex with Fe, the oxygen surrogate NO and ACV.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zao: Isopenicillin N synthase structure in complex with Fe and IPN exposed to dioxygen.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zap: Isopenicillin N synthase in complex with Fe, O2 and ACV under cryo conditions.
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zaq: Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and IPN after dioxygen exposure
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-06-05
Authors: Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.
PDB entry 6zar: As-isolated copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) at 1.1 A resolution (unrestrained, full matrix refinement by SHELX)
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. (strain ORS 375)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2020-06-05
Authors: Rose, S.L., Antonyuk, S.V., Sasaki, D., Yamashita, K., Hirata, K., Ueno, G., Ago, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 6zas: Damage-free as-isolated copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) determined by serial femtosecond rotation crystallography
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. (strain ORS 375)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-06-05
Authors: Rose, S.L., Antonyuk, S.V., Sasaki, D., Yamashita, K., Hirata, K., Ueno, G., Ago, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 6zat: Nitrite-bound copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) at 1.0 A resolution (unrestrained full matrix refinement by SHELX)
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. (strain ORS 375)
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2020-06-05
Authors: Rose, S.L., Antonyuk, S.V., Sasaki, D., Yamashita, K., Hirata, K., Ueno, G., Ago, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 6zau: Damage-free nitrite-bound copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) determined by serial femtosecond rotation crystallography
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. (strain ORS 375)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-06-05
Authors: Rose, S.L., Antonyuk, S.V., Sasaki, D., Yamashita, K., Hirata, K., Ueno, G., Ago, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.
PDB entry 6zav: NO-bound copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) at 1.19 A resolution (unrestrained, full matrix refinement by SHELX)
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium sp. (strain ORS 375)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2020-06-05
Authors: Rose, S.L., Antonyuk, S.V., Sasaki, D., Yamashita, K., Hirata, K., Ueno, G., Ago, H., Eady, R.R., Tosha, T., Yamamoto, M., Hasnain, S.S.