LiteFold/PDB huggingface dataset:
PDB entry 3wzv: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 0.1MPa - complex with IPM and Mg
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis MR-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-10-07
Authors: Nagae, T., Watanabe, N.
PDB entry 3wzw: 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 580MPa - complex with IPM and Mg
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis MR-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-10-08
Authors: Nagae, T., Watanabe, N.
PDB entry 3wzx: S266A mutant 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 0.1MPa - complex with IPM and Mg
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis MR-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-10-08
Authors: Nagae, T., Watanabe, N.
PDB entry 3wzy: S266A mutant 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 580MPa - complex with IPM and Mg
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis MR-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2014-10-08
Authors: Nagae, T., Watanabe, N.
PDB entry 3wzz: Crystal structure of PIP4KIIBETA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-10-08
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x00: Crystal structure of the core streptavidin mutant V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) complexed with bis iminobiotin long tail (Bis-IMNtail) at 1.3 A resolution
Classification: BIOTIN BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2014-10-09
Authors: Kawato, T., Mizohata, E., Shimizu, Y., Meshizuka, T., Yamamoto, T., Takasu, N., Matsuoka, M., Matsumura, H., Kodama, T., Kanai, M., Doi, H., Inoue, T., Sugiyama, A.
PDB entry 3x01: Crystal structure of PIP4KIIBETA complex with AMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x02: Crystal structure of PIP4KIIBETA complex with GMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x03: Crystal structure of PIP4KIIBETA complex with AMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x04: Crystal structure of PIP4KIIBETA complex with GMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x05: Crystal structure of PIP4KIIBETA T201M complex with AMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x06: Crystal structure of PIP4KIIBETA T201M complex with GMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x07: Crystal structure of PIP4KIIBETA N203A complex with AMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x08: Crystal structure of PIP4KIIBETA N203A complex with GMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x09: Crystal structure of PIP4KIIBETA F205L complex with AMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x0a: Crystal structure of PIP4KIIBETA F205L complex with GMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x0b: Crystal structure of PIP4KIIBETA I368A complex with AMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x0c: Crystal structure of PIP4KIIBETA I368A complex with GMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2014-10-09
Authors: Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
PDB entry 3x0d: Crystal structure of C.elegans PRMT7 in complex with SAH (P43212)
Classification: TRANSFERASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-10-10
Authors: Hasegawa, M., Toma-Fukai, S., Shimizu, T.
PDB entry 3x0e: Crystal structure of the ectodomain of human CD81 large extracellular loop (hCD81-LEL)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.844 Å
Deposited: 2014-10-14
Authors: Zhang, M., Cui, S.
PDB entry 3x0f: Crystal structure of the ectodomain of mouse CD81 large extracellular loop (mCD81-LEL)
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.471 Å
Deposited: 2014-10-14
Authors: Zhang, M., Cui, S.
PDB entry 3x0g: Crystal structure of the ectodomain of African green monkey CD81 large extracellular loop (agmCD81-LEL)
Classification: CELL ADHESION
Source organism: Chlorocebus sabaeus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.899 Å
Deposited: 2014-10-14
Authors: Zhang, M., Cui, S.
PDB entry 3x0i: ADP ribose pyrophosphatase in apo state at 0.91 angstrom resolution
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.91 Å
Deposited: 2014-10-16
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0j: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in apo state at 0.92 angstrom resolution
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.92 Å
Deposited: 2014-10-16
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0k: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ES-state at 0.97 angstrom resolution
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2014-10-16
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0l: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ES-state at 1.00 angstrom resolution
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2014-10-17
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0m: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESM-state at reaction time of 3 min
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2014-10-17
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0n: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESM-state at reaction time of 6 min
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2014-10-17
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0o: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESMM-state at reaction time of 10 min
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.09 Å
Deposited: 2014-10-17
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0p: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESMM-state at reaction time of 15 min
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2014-10-17
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0q: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESMM-state at reaction time of 20 min
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2014-10-17
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0r: DP ribose pyrophosphatase from Thermus thermophilus HB8 in E'-state at reaction time of 30 min
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2014-10-17
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0s: ADP ribose pyrophosphatase from Thermus thermophilus HB8 in E'-state at reaction time of 50 min
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2014-10-17
Authors: Furuike, Y., Akita, Y., Miyahara, I., Kamiya, N.
PDB entry 3x0t: Crystal structure of PirA
Classification: TOXIN
Source organism: Vibrio parahaemolyticus M0605
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2014-10-22
Authors: Wang, H.C., Ko, T.P., Wang, A.H.J., Lo, C.F.
PDB entry 3x0u: Crystal structure of PirB
Classification: TOXIN
Source organism: Vibrio parahaemolyticus M0605
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-10-22
Authors: Wang, H.C., Ko, T.P., Wang, A.H.J., Lo, C.F.
PDB entry 3x0v: Structure of L-lysine oxidase
Classification: OXIDOREDUCTASE
Source organism: Trichoderma viride
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-10-22
Authors: Sano, T., Uchida, Y., Amano, M., Kawaguchi, T., Kondo, H., Inagaki, K., Imada, K.
PDB entry 3x0w: Crystal structure of PLEKHM1 LIR-fused human LC3B_2-119
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2014-10-22
Authors: Suzuki, H., McEwan, D.G., Popovic, D., Gubas, A., Terawaki, S., Stadel, D., Coxon, F., Stegmann, D.M., Bhogaraju, S., Maddi, K., Kirchhoff, A., Gatti, E., Helfrich, M.H., Behrends, C., Pierre, P., Dikic, I., Wakatsuki, S.
PDB entry 3x0x: Crystal structure of apo-DszC from Rhodococcus erythropolis D-1
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2014-10-23
Authors: Guan, L.J., Lee, W.C., Wang, S.P., Ohtsuka, J., Tanokura, M.
PDB entry 3x0y: Crystal structure of FMN-bound DszC from Rhodococcus erythropolis D-1
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-10-23
Authors: Guan, L.J., Lee, W.C., Wang, S.P., Ohtsuka, J., Tanokura, M.
PDB entry 3x11: Crystal structure of HLA-B*57:01.I80N.L82R.R83G
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-10-24
Authors: Vivian, J.P., Rossjohn, J.
PDB entry 3x12: Crystal structure of HLA-B*57:01.I80N
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-10-24
Authors: Vivian, J.P., Rossjohn, J.
PDB entry 3x13: Crystal structure of HLA-B*0801.N80I
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-10-24
Authors: Vivian, J.P., Rossjohn, J.
PDB entry 3x14: Crystal structure of HLA-B*0801.N80I.R82L.G83R
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-10-25
Authors: Vivian, J.P., Rossjohn, J.
PDB entry 3x15: Dimeric Aquifex aeolicus cytochrome c555
Classification: ELECTRON TRANSPORT
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-10-29
Authors: Yamanaka, M., Nagao, S., Komori, H., Higuchi, Y., Hirota, S.
PDB entry 3x16: Crystal structure of the catalase-peroxidase KatG W78F mutant from Synechococcus elongatus PCC7942
Classification: OXIDOREDUCTASE
Source organism: Synechococcus elongatus PCC 7942
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2014-10-30
Authors: Tada, T., Wada, K., Kamachi, S.
PDB entry 3x17: Crystal structure of metagenome-derived glycoside hydrolase family 9 endoglucanase
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-10-30
Authors: Okano, H., Angkawidjaja, C., Kanaya, S.
PDB entry 3x1b: Crystal structure of laccase from Lentinus sp. at 1.8 A resolution
Classification: OXIDOREDUCTASE
Source organism: Lentinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-10-31
Authors: Jeng, W.Y., Shyur, L.F., Wang, A.H.J.
PDB entry 3x1d: Crystal Structure of Atlastin from Drosophila melanogaster
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2014-11-14
Authors: Liu, X.
PDB entry 3x1e: Structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans without chloride
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans NG80-2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2014-11-16
Authors: Fukuda, Y., Inoue, T.
PDB entry 3x1f: H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans NG80-2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2014-11-16
Authors: Fukuda, Y., Inoue, T.
PDB entry 3x1g: H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans showing two coordination geometries at the T2Cu site
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans NG80-2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2014-11-16
Authors: Fukuda, Y., Inoue, T.
PDB entry 3x1h: hPPARgamma Ligand binding domain in complex with 5-oxo-tricosahexaenoic acid
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-11-18
Authors: Egawa, D., Itoh, T., Yamamoto, K.
PDB entry 3x1i: hPPARgamma Ligand binding domain in complex with 6-oxo-tetracosahexaenoic acid
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-11-18
Authors: Egawa, D., Itoh, T., Yamamoto, K.
PDB entry 3x1j: Crystal Structure of Phosphopantetheine adenylyltransferase (PPAT/CoaD) with AcCoA from Pseudomonas aeruginosa
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa 2192
Experimental method: X-RAY DIFFRACTION
Resolution: 2.334 Å
Deposited: 2014-11-19
Authors: Chatterjee, R., Datta, S.
PDB entry 3x1k: crystal structure of Phosphoapantetheine adenylyltransferase PPAT/CoaD with AMP-PNP from Pseudomonas aerugonosa
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa 2192
Experimental method: X-RAY DIFFRACTION
Resolution: 2.547 Å
Deposited: 2014-11-20
Authors: Chatterjee, R., Datta, S.
PDB entry 3x1l: Crystal Structure of the CRISPR-Cas RNA Silencing Cmr Complex Bound to a Target Analog
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Archaeoglobus fulgidus DSM 4304; Pyrococcus furiosus DSM 3638; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.096 Å
Deposited: 2014-11-20
Authors: Osawa, T., Numata, T.
PDB entry 3x1m: Crystal structure of Phosphopantetheine adenylyltransferase/PPAT from Pseudomonas aeruginosa with CoA
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa 2192
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-11-24
Authors: Chatterjee, R., Datta, S.
PDB entry 3x1n: Nitrite-bound thermostable copper nitrite reductase at 320 K
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans NG80-2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2014-11-25
Authors: Fukuda, Y., Inoue, T.
PDB entry 3x1o: Crystal structure of the ROQ domain of human Roquin
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2014-11-26
Authors: Ose, T., Verma, A., Cockburn, J.B., Berrow, N.S., Alderton, D., Stuart, D., Owens, R.J., Jones, E.Y.
PDB entry 3x1s: Crystal structure of the nucleosome core particle
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.805 Å
Deposited: 2014-11-27
Authors: Sivaraman, P., Kumarevel, T.S.
PDB entry 3x1t: Crystal structure of nucleosome core particle consisting of mouse testis specific histone variants H2aa and H2ba
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.808 Å
Deposited: 2014-11-27
Authors: Sivaraman, P., Kumarevel, T.S.
PDB entry 3x1u: Crystal structure of nucleosome core particle in the presence of histone variants involved in reprogramming
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2014-11-28
Authors: Sivaraman, P., Kumarevel, T.S.
PDB entry 3x1v: Crystal structure of nucleosome core particle in the presence of histone variant involved in reprogramming
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.921 Å
Deposited: 2014-11-28
Authors: Sivaraman, P., Kumarevel, T.S.
PDB entry 3x1w: Ras-related protein Rap1B with GDP
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2014-12-02
Authors: Noguchi, H., Ikegami, T., Akashi, S., Park, S.Y., Tame, J.R.H., Unzai, S.
PDB entry 3x1x: Ras-related protein Rap1B with GppNHp
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2014-12-02
Authors: Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.
PDB entry 3x1y: Ras-related protein Rap1B(L9V) with GppNHp
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.168 Å
Deposited: 2014-12-02
Authors: Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.
PDB entry 3x1z: Ras-related protein Rap1B(T65A) with GppNHp
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2014-12-02
Authors: Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.
PDB entry 3x20: Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 25 min
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2014-12-03
Authors: Yamanaka, Y., Hashimoto, K., Noguchi, N., Yohda, M., Odaka, M.
PDB entry 3x21: Crystal structure of Escherichia coli nitroreductase NfsB mutant T41L/N71S/F124W
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 3.002 Å
Deposited: 2014-12-06
Authors: Bai, J., Yang, J., Zhou, Y., Yang, Q.
PDB entry 3x22: Crystal structure of Escherichia coli nitroreductase NfsB mutant N71S/F123A/F124W
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2014-12-06
Authors: Bai, J., Yang, J., Zhou, Y., Yang, Q.
PDB entry 3x23: Radixin complex
Classification: CELL INVASION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.396 Å
Deposited: 2014-12-09
Authors: Terawaki, S., Kitano, K., Aoyama, M., Mori, T., Hakoshima, T.
PDB entry 3x24: Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 120 min
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2014-12-10
Authors: Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3x25: Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 700 min
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2014-12-10
Authors: Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3x26: Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 5 min
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2014-12-10
Authors: Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3x27: Structure of McbB in complex with tryptophan
Classification: LYASE
Source organism: Marinactinospora thermotolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.481 Å
Deposited: 2014-12-10
Authors: Mori, T., Sahashi, S., Morita, H., Abe, I.
PDB entry 3x28: Crystal structure of Nitrile Hydratase mutant bR56K
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2014-12-12
Authors: Yamanaka, Y., Hashimoto, K., Noguchi, K., Yohda, M., Odaka, M.
PDB entry 3x29: CRYSTAL STRUCTURE of MOUSE CLAUDIN-19 IN COMPLEX with C-TERMINAL FRAGMENT OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN
Classification: CELL ADHESION
Source organism: Clostridium perfringens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2014-12-13
Authors: Saitoh, Y., Suzuki, H., Tani, K., Nishikawa, K., Irie, K., Ogura, Y., Tamura, A., Tsukita, S., Fujiyoshi, Y.
PDB entry 3x2e: A thermophilic hydrolase
Classification: HYDROLASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2014-12-21
Authors: Zheng, Y., Ko, T.P., Huang, C.H.
PDB entry 3x2f: A Thermophilic S-Adenosylhomocysteine Hydrolase
Classification: HYDROLASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2014-12-21
Authors: Zheng, Y., Ko, T.P., Huang, C.H.
PDB entry 3x2g: X-ray structure of PcCel45A N92D apo form at 100K
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
PDB entry 3x2h: X-ray structure of PcCel45A N92D with cellopentaose at 95K.
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
PDB entry 3x2i: X-ray structure of PcCel45A N92D apo form at 298K.
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
PDB entry 3x2j: X-ray structure of PcCel45A D114N apo form at 95K.
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.301 Å
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
PDB entry 3x2k: X-ray structure of PcCel45A D114N with cellopentaose at 95K.
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.182 Å
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
PDB entry 3x2l: X-ray structure of PcCel45A apo form at 95K.
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.83 Å
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Ohta, K., Tanaka, H., Inaka, K., Samejima, M., Igarashi, K.
PDB entry 3x2m: X-ray structure of PcCel45A with cellopentaose at 0.64 angstrom resolution.
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.64 Å
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
PDB entry 3x2n: Proton relay pathway in inverting cellulase
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Fushinobu, S., Igarashi, K., Samejima, M.
PDB entry 3x2o: Neutron and X-ray joint refined structure of PcCel45A apo form at 298K.
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: NEUTRON DIFFRACTION, X-RAY DIFFRACTION
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Tanaka, I., Niimura, N., Samejima, M., Igarashi, K.
PDB entry 3x2p: Neutron and X-ray joint refined structure of PcCel45A with cellopentaose at 298K.
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: NEUTRON DIFFRACTION, X-RAY DIFFRACTION
Deposited: 2014-12-22
Authors: Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Tanaka, I., Niimura, N., Samejima, M., Igarashi, K.
PDB entry 3x2q: X-ray structure of cyanide-bound bovine heart cytochrome c oxidase in the fully oxidized state at 2.0 angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-12-26
Authors: Yano, N., Muramoto, K., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yoshikawa, S., Tsukihara, T.
PDB entry 3x2r: Structure of the nonameric bacterial amyloid secretion channel CsgG
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli Xuzhou21
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-12-29
Authors: Huang, Y., Cao, B., Zhao, Y., Kou, Y., Ni, D., Zhang, X.C.
PDB entry 3x2s: Crystal structure of pyrene-conjugated adenylate kinase
Classification: TRANSFERASE
Source organism: Escherichia coli str. K-12 substr. MDS42
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-12-31
Authors: Fujii, A., Sekiguchi, Y., Matsumura, H., Inoue, T., Chung, W.-S., Hirota, S., Matsuo, T.
PDB entry 3x2t: Crystal Structure of the KIF5C Motor Domain With ADP
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-01-02
Authors: Inoue, S., Nitta, R., Hirokawa, N.
PDB entry 3x2u: Michaelis-like initial complex of cAMP-dependent Protein Kinase Catalytic Subunit.
Classification: TRANSFERASE/PEPTIDE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-01-02
Authors: Das, A., Langan, P., Gerlits, O., Kovalevsky, A.Y., Heller, W.T.
PDB entry 3x2v: Michaelis-like complex of cAMP-dependent Protein Kinase Catalytic Subunit
Classification: TRANSFERASE/PEPTIDE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2015-01-02
Authors: Das, A., Langan, P., Gerlits, O., Kovalevsky, A.Y., Heller, W.T.
PDB entry 3x2w: Michaelis complex of cAMP-dependent Protein Kinase Catalytic Subunit
Classification: TRANSFERASE/PEPTIDE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-01-02
Authors: Das, A., Langan, P., Gerlits, O., Kovalevsky, A.Y., Heller, W.T.
PDB entry 3x2x: Crystal structure of metallo-beta-lactamase H48A from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 3.42 Å
Deposited: 2015-01-07
Authors: Choi, H.J., Kim, H.J., Matsuura, A., Mikami, B., Yoon, H.J., Lee, H.H.
PDB entry 3x2y: Crystal structure of metallo-beta-lactamase H8A from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2015-01-07
Authors: Choi, H.J., Kim, H.J., Matsuura, A., Mikami, B., Yoon, H.J., Lee, H.H.
PDB entry 3x2z: Crystal structure of metallo-beta-lactamase in complex with nickel from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2015-01-07
Authors: Choi, H.J., Kim, H.J., Matsuura, A., Mikami, B., Yoon, H.J., Lee, H.H.
PDB entry 3x30: Crystal structure of metallo-beta-lactamase from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.921 Å
Deposited: 2015-01-07
Authors: Choi, H.J., Kim, H.J., Matsuura, A., Mikami, B., Yoon, H.J., Lee, H.H.
PDB entry 3x31: Crystal structure of the human vitamin D receptor ligand binding domain complexed with 7,8-cis-14-epi-1a,25-Dihydroxy-19-norvitamin D3
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2015-01-13
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3x32: Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5 in form 1 crystal
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 0.83 Å
Deposited: 2015-01-14
Authors: Hirano, Y., Kimura, S., Tamada, T.
PDB entry 3x33: Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5 in form 2 crystal
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 0.93 Å
Deposited: 2015-01-14
Authors: Hirano, Y., Kimura, S., Tamada, T.
PDB entry 3x34: Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 1 crystal
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 0.76 Å
Deposited: 2015-01-14
Authors: Hirano, Y., Kimura, S., Tamada, T.
PDB entry 3x35: Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 2 crystal
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2015-01-14
Authors: Hirano, Y., Kimura, S., Tamada, T.
PDB entry 3x36: Crystal structure of the human vitamin D receptor ligand binding domain complexed with 7,8-cis-1a,25-Dihydroxy-19-norvitamin D3
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2015-01-16
Authors: Takimoto-Kamimura, M., Kakuda, S.
PDB entry 3x37: Crystal structure of the N-terminal domain of Sld7 in complex with Sld3
Classification: REPLICATION REGULATOR
Source organism: Zygosaccharomyces rouxii CBS 732
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2015-01-16
Authors: Itou, H., Araki, H., Shirakihara, Y.
PDB entry 3x38: Crystal structure of the C-terminal domain of Sld7
Classification: REPLICATION REGULATOR
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2015-01-16
Authors: Itou, H., Araki, H., Shirakihara, Y.
PDB entry 3x39: Domain-swapped dimer of Pseudomonas aeruginosa cytochrome c551
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-01-16
Authors: Nagao, S., Ueda, M., Osuka, H., Komori, H., Kamikubo, H., Kataoka, M., Higuchi, Y., Hirota, S.
PDB entry 3x3b: Crystal structure of the light-driven sodium pump KR2 in acidic state
Classification: MEMBRANE PROTEIN
Source organism: Dokdonia eikasta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-01-18
Authors: Kato, H.E., Inoue, K., Abe-Yoshizumi, R., Kato, Y., Ono, H., Konno, M., Ishizuka, T., Hoque, M.R., Hososhima, S., Kunitomo, H., Ito, J., Yoshizawa, S., Yamashita, K., Takemoto, M., Nishizawa, T., Taniguchi, R., Kogure, K., Maturana, A.D., Iino, Y., Yawo, H., Ishitani, R., Kandori, H., Nureki, O.
PDB entry 3x3c: Crystal structure of the light-driven sodium pump KR2 in neutral state
Classification: MEMBRANE PROTEIN
Source organism: Dokdonia eikasta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-01-18
Authors: Kato, H.E., Inoue, K., Abe-Yoshizumi, R., Kato, Y., Ono, H., Konno, M., Ishizuka, T., Hoque, M.R., Hososhima, S., Kunitomo, H., Ito, J., Yoshizawa, S., Yamashita, K., Takemoto, M., Nishizawa, T., Taniguchi, R., Kogure, K., Maturana, A.D., Iino, Y., Yawo, H., Ishitani, R., Kandori, H., Nureki, O.
PDB entry 3x3f: TRAIL-R2 Extracellular Region Complexed to a Fab fragment from Human Agonist Antibody KMTR2
Classification: APOPTOSIS/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-01-20
Authors: Tamada, T.
PDB entry 3x3g: Fab fragment from anti TRAIL-R2 Human Agonist Antibody KMTR2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2015-01-20
Authors: Tamada, T.
PDB entry 3x3h: Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) 3KP (K176P, K199P, K224P) triple mutant
Classification: LYASE
Source organism: Manihot esculenta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2015-01-21
Authors: Cielo, C.B.C., Yamane, T., Asano, Y., Dadashipour, M., Suzuki, A., Mizushima, T., Komeda, H., Okazaki, S.
PDB entry 3x3m: Crystal structure of EccB1 of Mycobacterium tuberculosis in spacegroup P212121
Classification: PROTEIN TRANSPORT
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-01-24
Authors: Zhang, X.L., Li, D.F., Zhang, X.E., Bi, L.J., Wang, D.C.
PDB entry 3x3n: Crystal structure of EccB1 of Mycobacterium tuberculosis in spacegroup P21
Classification: PROTEIN TRANSPORT
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-01-24
Authors: Zhang, X.L., Li, D.F., Zhang, X.E., Bi, L.J., Wang, D.C.
PDB entry 3x3o: Recombinant thaumatin in the presence of 0.5M PST at 298K
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2015-01-26
Authors: Masuda, T., Okubo, K., Mikami, B.
PDB entry 3x3p: Recombinant thaumatin in the presence of 0.75M PST at 293K
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2015-01-26
Authors: Masuda, T., Okubo, K., Mikami, B.
PDB entry 3x3q: Structure of recombinant thaumatin in the presence of 1.0M PST, pH7 at 293K
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-01-26
Authors: Masuda, T., Okubo, K., Mikami, B.
PDB entry 3x3r: Recombinant thaumatin in the presence of 1.0M PST and soaked 1 hr at 293K
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2015-01-26
Authors: Masuda, T., Okubo, K., Mikami, B.
PDB entry 3x3s: Recombinant thaumatin in the presence of 1.5M PST at 293K
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2015-01-26
Authors: Masuda, T., Okubo, K., Mikami, B.
PDB entry 3x3t: Recombinant thaumatin in the presence of 1.5M PST at 293K
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.501 Å
Deposited: 2015-01-26
Authors: Masuda, T., Okubo, K., Mikami, B.
PDB entry 3x3u: Crystal structure of wild-type of E. coli CutA1
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2015-02-12
Authors: Tanaka, T., Matsuura, Y., Yutani, K.
PDB entry 3x3x: Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2015-03-10
Authors: Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.
PDB entry 3x3y: Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by histamine
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2015-03-10
Authors: Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.
PDB entry 3x3z: Copper amine oxidase from Arthrobacter globiformis: Aminoresorcinol form produced by anaerobic reduction with ethylamine hydrochloride
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2015-03-10
Authors: Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.
PDB entry 3x40: Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium chloride
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-03-10
Authors: Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.
PDB entry 3x41: Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium bromide
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2015-03-10
Authors: Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.
PDB entry 3x42: Crystal structure of copper amine oxidase from Arthrobacter globiformis in the presence of sodium bromide
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.875 Å
Deposited: 2015-03-10
Authors: Okajima, T., Nakanishi, S., Murakawa, T., Kataoka, M., Hayashi, H., Hamaguchi, A., Nakai, T., Kawano, Y., Yamaguchi, H., Tanizawa, K.
PDB entry 3x43: Crystal structure of O-ureido-L-serine synthase
Classification: TRANSFERASE
Source organism: Streptomyces lavendulae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-03-13
Authors: Matoba, Y., Uda, N., Oda, K., Sugiyama, M.
PDB entry 3x44: Crystal structure of O-ureido-L-serine-bound K43A mutant of O-ureido-L-serine synthase
Classification: TRANSFERASE
Source organism: Streptomyces lavendulae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-03-13
Authors: Matoba, Y., Uda, N., Oda, K., Sugiyama, M.
PDB entry 3xim: ARGININE RESIDUES AS STABILIZING ELEMENTS IN PROTEINS
Classification: ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
Source organism: Actinoplanes missouriensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1991-05-29
Authors: Mrabet, N.T., Van Denbroek, A., Van Den Brande, I., Stanssens, P., Laroche, Y., Lambeir, A.-M., Matthyssens, G., Jenkins, J., Chiadmi, M., Vantilbeurgh, H., Rey, F., Janin, J., Quax, W.J., Lasters, I., Demaeyer, M., Wodak, S.J.
PDB entry 3xin: PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
Classification: ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
Source organism: Actinoplanes missouriensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1992-04-06
Authors: Janin, J.
PDB entry 3xis: A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCES RUBIGINOSUS STRUCTURES WITH XYLITOL AND D-XYLOSE
Classification: ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 1991-03-25
Authors: Whitlow, M., Howard, A.J.
PDB entry 3yas: HYDROXYNITRILE LYASE COMPLEXED WITH ACETONE
Classification: LYASE
Source organism: Hevea brasiliensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 1999-03-15
Authors: Zuegg, J., Wagner, U.G., Gugganig, M., Kratky, C.
PDB entry 3ygs: APAF-1 CARD IN COMPLEX WITH PRODOMAIN OF PROCASPASE-9
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1999-05-08
Authors: Qin, H., Srinivasula, S., Wu, G., Fernandes-Alnemri, T., Alnemri, E., Shi, Y.
PDB entry 3ypi: ELECTROPHILIC CATALYSIS IN TRIOSEPHOSPHASE ISOMERASE: THE ROLE OF HISTIDINE-95
Classification: ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1990-12-31
Authors: Lolis, E., Petsko, G.A.
PDB entry 3zbd: Structure of TGEV nsp1
Classification: VIRAL PROTEIN
Source organism: PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2012-11-08
Authors: Jansson, A.M.
PDB entry 3zbe: E. coli O157 ParE2-associated antitoxin 2 (PaaA2)
Classification: TOXIN-ANTITOXIN
Source organism: ESCHERICHIA COLI O157:H7
Experimental method: SOLUTION NMR
Deposited: 2012-11-08
Authors: Sterckx, Y.G.J., Van Nuland, N.A.J., Vranken, W.F., Loris, R.
PDB entry 3zbf: Structure of Human ROS1 Kinase Domain in Complex with Crizotinib
Classification: TRANSFERASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-11-08
Authors: McTigue, M., Deng, Y., Liu, W., Brooun, A., Stewart, A.
PDB entry 3zbg: Crystal structure of wild-type SCP2 thiolase from Leishmania mexicana at 1.85 A
Classification: TRANSFERASE
Source organism: LEISHMANIA MEXICANA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2012-11-09
Authors: Harijan, R.K., Kiema, T.-R., Weiss, M.S., Michels, P.A.M., Wierenga, R.K.
PDB entry 3zbh: Geobacillus thermodenitrificans EsxA crystal form I
Classification: UNKNOWN FUNCTION
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2012-11-09
Authors: Ng, W.M., Zoltner, M., Palmer, T., Hunter, W.N.
PDB entry 3zbi: Fitting result in the O-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase
Classification: CELL ADHESION
Source organism: ESCHERICHIA COLI
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.5 Å
Deposited: 2012-11-10
Authors: Rivera-Calzada, A., Fronzes, R., Savva, C.G., Chandran, V., Lian, P.W., Laeremans, T., Pardon, E., Steyaert, J., Remaut, H., Waksman, G., Orlova, E.V.
PDB entry 3zbj: Fitting results in the I-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase
Classification: CELL ADHESION
Source organism: ESCHERICHIA COLI
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.5 Å
Deposited: 2012-11-10
Authors: Rivera-Calzada, A., Fronzes, R., Savva, C.G., Chandran, V., Lian, P.W., Laeremans, T., Pardon, E., Steyaert, J., Remaut, H., Waksman, G., Orlova, E.V.
PDB entry 3zbk: Crystal structure of SCP2 thiolase from Leishmania mexicana: The C123A mutant.
Classification: TRANSFERASE
Source organism: LEISHMANIA MEXICANA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-11-10
Authors: Harijan, R.K., Kiema, T.-R., Weiss, M.S., Michels, P.A.M., Wierenga, R.K.
PDB entry 3zbl: Crystal structure of SCP2 thiolase from Leishmania mexicana: The C123S mutant.
Classification: TRANSFERASE
Source organism: LEISHMANIA MEXICANA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-11-10
Authors: Harijan, R.K., Kiema, T.-R., Weiss, M.S., Michels, P.A.M., Wierenga, R.K.
PDB entry 3zbm: Structure of M92A variant of three-domain heme-Cu nitrite reductase from Ralstonia pickettii
Classification: OXIDOREDUCTASE
Source organism: RALSTONIA PICKETTII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2012-11-10
Authors: Antonyuk, S.V., Han, C., Eady, R.R., Hasnain, S.S.