LiteFold/PDB huggingface dataset:
PDB entry 9eeg: Room-temperature X-ray structure of HIV-1 protease in complex with GRL-11124A inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-11-19
Authors: Kovalevsky, A., Gerlits, O., Ghosh, A.
PDB entry 9eeh: Crystal structure of E. coli aspartate transcarbamoylase in the R-state complexed with PALA, ATP, GTP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Bhatt, N., Pei, X., Ando, N.
PDB entry 9eei: Crystal structure of the SARS-CoV-2 Omicron nsp5 main protease (Mpro) E166V mutant in complex with inhibitor GC376
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2024-11-19
Authors: Neilsen, G., Kirby, K.A., Sarafianos, S.G.
PDB entry 9eej: Crystal structure of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, ATP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9eek: Cryo-EM model of E. coli aspartate transcarbamoylase in the ligand-free T-state
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9eel: Cryo-EM model of E. coli aspartate transcarbamoylase in the T-state complexed with CP, CTP, UTP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-11-19
Authors: Miller, R.C., Ando, N.
PDB entry 9eem: Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, CTP, UTP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9een: Cryo-EM model of E. coli aspartate transcarbamoylase in the T-state complexed with CP, CTP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2024-11-19
Authors: Miller, R.C., Ando, N.
PDB entry 9eeo: Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, CTP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9eep: Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP and succinate
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9eeq: Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, ATP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9eer: Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, ATP, GTP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9ees: Cryo-EM model of E. coli aspartate transcarbamoylase in an expanded state complexed with CP, ATP, GTP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9eet: Crystal structure of the SARS-CoV-2 nsp5 main protease (Mpro) E166V mutant in complex with inhibitor GC376
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-11-19
Authors: Neilsen, G., Kirby, K.A., Sarafianos, S.G.
PDB entry 9eeu: Cryo-EM model of E. coli aspartate transcarbamoylase in the T-state complexed with CP, ATP, and Mg2+
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-11-19
Authors: Patterson, M.G., Miller, R.C., Ando, N.
PDB entry 9eev: Crystal structure of the SARS-CoV-2 Omicron nsp5 main protease (Mpro) E166V mutant in complex with inhibitor Nirmatrelvir (PF-07321332)
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-11-19
Authors: Neilsen, G., Kirby, K.A., Sarafianos, S.G.
PDB entry 9eex: STEP (PTPN5) at high resolution with citrate bound in active site
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2024-11-19
Authors: Guerrero, L., Ebrahim, A., Riley, B.T., Keedy, D.A.
PDB entry 9eey: STEP (PTPN5) with active-site disulfide bond and allosteric-site loop shift
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-11-19
Authors: Guerrero, L., Ebrahim, A., Riley, B.T., Keedy, D.A.
PDB entry 9eez: STEP (PTPN5) with active-site disulfide bond and covalent ligand bound to distal C505 and C518
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-11-19
Authors: Guerrero, L., Ebrahim, A., Riley, B.T., Keedy, D.A.
PDB entry 9ef0: EM structure of cytochrome P450 reductase
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-11-19
Authors: Lepesheva, G.I., Ren, Y.
PDB entry 9ef1: Cryo-EM structure of Drosophila melanogaster insulin receptor (dmIR) bound with one DILP1, asymmetric conformation
Classification: STRUCTURAL PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-11-19
Authors: Bai, X.C.
PDB entry 9ef2: Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin candidate 2, open conformation
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-11-19
Authors: Werther, R., Nguyen, A., Estrada Alamo, K.A., Wang, X., Campbell, M.G.
PDB entry 9ef4: Cryo-EM structure of Drosophila melanogaster insulin receptor (dmIR) bound with two DILP1, symmetric conformation
Classification: STRUCTURAL PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-11-19
Authors: Bai, X.C.
PDB entry 9ef5: Cryo-EM structure of Drosophila melanogaster insulin receptor (dmIR) bound with one DILP2, asymmetric conformation
Classification: STRUCTURAL PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-11-19
Authors: Bai, X.C.
PDB entry 9ef6: Crystal structure of Cryptosporidium parvum N-myristoyltransferase with bound myristoyl-CoA and inhibitor 20045
Classification: TRANSFERASE/INHIBITOR
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-11-19
Authors: Fenwick, M.K., Staker, B.L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ef7: Crystal structure of Cryptosporidium parvum N-myristoyltransferase with bound myristoyl-CoA and inhibitor 20057
Classification: TRANSFERASE/INHIBITOR
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-11-19
Authors: Fenwick, M.K., Staker, B.L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ef8: Crystal structure of Cryptosporidium parvum N-myristoyltransferase with bound myristoyl-CoA and inhibitor 20084
Classification: TRANSFERASE/INHIBITOR
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-11-19
Authors: Fenwick, M.K., Staker, B.L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ef9: Cryo-EM structure of Drosophila melanogaster insulin receptor (dmIR) bound with three DILP5, asymmetric conformation
Classification: STRUCTURAL PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-11-19
Authors: Bai, X.C.
PDB entry 9efa: Chemical inhibition of the N-acetyltaurine amidohydrolase PTER reduces food intake and obesity
Classification: HYDROLASE
Source organism: Amphimedon queenslandica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-11-20
Authors: Fu, S., Hinshaw, S.M.
PDB entry 9efb: Chemical inhibition of the N-acetyltaurine amidohydrolase PTER reduces food intake and obesity
Classification: HYDROLASE
Source organism: Amphimedon queenslandica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-11-20
Authors: Fu, S., Hinshaw, S.M.
PDB entry 9efc: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-588
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2024-11-20
Authors: Erdogan, F., Seo, H.-S., Dhe-Paganon, S.
PDB entry 9efd: Crystal Structure in space group C2221 of a nucleoid-associated protein (UBP) from Sulfolobus islandicus.
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus islandicus REY15A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2024-11-20
Authors: Dhanaraju, R., Gonzalez-Gutierrez, G., Bell, S.D.
PDB entry 9efe: Crystal Structure in space group P21 of a nucleoid-associated protein (UBP) from Sulfolobus islandicus.
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus islandicus REY15A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-11-20
Authors: Dhanaraju, R., Gonzalez-Gutierrez, G., Bell, S.D.
PDB entry 9eff: Crystal Structure of a nucleoid-associated protein (UBP) bound to DNA from Sulfolobus islandicus.
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus islandicus REY15A; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-11-20
Authors: Dhanaraju, R., Gonzalez-Gutierrez, G., Bell, S.D.
PDB entry 9efg: VIP3Cb1 Toxin structure
Classification: TOXIN
Source organism: Paenibacillus popilliae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-11-20
Authors: Rau, M.J., Rydel, T., Zheng, M., White, T.
PDB entry 9efh: The prefusion conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-11-20
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9efi: VIP3Cb1 Protoxin Structure
Classification: TOXIN
Source organism: Paenibacillus popilliae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-11-20
Authors: Rau, M.J., Rydel, T., Zheng, M., White, T.
PDB entry 9efj: Irreversible Mcl-1/HIT2 Complex
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-11-20
Authors: Muzzarelli, K.M., Assar, Z., Udompholkul, P., Pellecchia, M., Baggio, C., Prentiss, A.M.
PDB entry 9efk: Cryo-EM structure of the portal-tail complex of LME-1 phage
Classification: VIRAL PROTEIN
Source organism: Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2024-11-20
Authors: Deme, J.C., Lea, S.M.
PDB entry 9efl: Structure of a GH16_17 carrageenase from a metagenomic dataset.
Classification: HYDROLASE
Source organism: bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-11-20
Authors: Boraston, A.B., Tingley, J., Mihalynuk, L., Abbott, D.W.
PDB entry 9efm: Cryo-EM structure of COP9 signalosome precatalytic state with neddylated cullin-1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-11-20
Authors: Shi, H., Zheng, N.
PDB entry 9efn: Crystal structure of Saccharomyces cerevisiae cross-linked Sfh1 (K197C, F233C) mutant in complex with phosphatidylethanolamine
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-11-20
Authors: Green, S.M., Laganowsky, A., Krieger, I., Singh, P.K., Sacchettini, J., Igumenova, T.I., Bankaitis, V.A.
PDB entry 9efo: Staphylococcus aureus MoaA C-terminal tail peptide in complex with G340A-MoaA
Classification: BIOSYNTHETIC PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-11-20
Authors: Pang, H., Wu, Q., Li, D., Zhou, P., Yokoyama, K.
PDB entry 9efp: Crystal Structure of Saccharomyces cerevisiae Sec14p in complex with phosphatidylcholine
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-11-20
Authors: Green, S.M., Laganowsky, A., Krieger, I., Singh, P.K., Sacchettini, J., Igumenova, T.I., Bankaitis, V.A.
PDB entry 9efq: Cryo-EM structure of COP9 signalosome precatalytic state with neddylated cullin-2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-11-20
Authors: Shi, H., Zheng, N.
PDB entry 9efr: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-600
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2024-11-20
Authors: Erdogan, F., Seo, H.-S., Dhe-Paganon, S.
PDB entry 9efs: The primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-11-20
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9eft: The primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant H516P
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-11-20
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9efu: CryoEM structure of BchN-BchB electron acceptor component protein of DPOR with Pchlide
Classification: OXIDOREDUCTASE
Source organism: Cereibacter sphaeroides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-11-20
Authors: Kashyap, R., Antony, E.
PDB entry 9efv: Cryo-EM structure of CSN-N8CUL1 in complex with CSN5i-3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-11-20
Authors: Shi, H., Zheng, N.
PDB entry 9efw: Co-crystal structure of yeast Forkhead transcription factor Fkh1 bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-11-20
Authors: Wang, G.L., Jiang, Y., Sun, Y., Nasertorabi, F., Batyuk, A., Aparicio, O.M., Cherezov, V., Rohs, R.
PDB entry 9efx: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-584
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.262 Å
Deposited: 2024-11-20
Authors: Erdogan, F., Seo, H.-S., Dhe-Paganon, S.
PDB entry 9efy: Co-MAHF-9 A8G Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.91 Å
Deposited: 2024-11-20
Authors: Richardson-Matthews, R.M.
PDB entry 9efz: Chicken BEST1 bound to GABA in an open state
Classification: MEMBRANE PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.95 Å
Deposited: 2024-11-20
Authors: Pant, S., Long, S.B.
PDB entry 9eg0: Co-MAHF-9 Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.92 Å
Deposited: 2024-11-20
Authors: Richardson-Matthews, R.M.
PDB entry 9eg1: COP9 signalosome deneddylation complex with cullin-5
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-11-20
Authors: Shi, H., Zheng, N.
PDB entry 9eg2: Co-MAHF-9 A8F Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.89 Å
Deposited: 2024-11-20
Authors: Richardson-Matthews, R.M.
PDB entry 9eg3: Co-MAHF-9 A8H Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2024-11-20
Authors: Richardson-Matthews, R.M.
PDB entry 9eg4: Cryo-EM structure of the icosahedral capsid of LME-1 phage
Classification: VIRUS
Source organism: Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2024-11-20
Authors: Deme, J.C., Lea, S.M.
PDB entry 9eg5: Co-MAHF-9 A8S Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2024-11-20
Authors: Richardson-Matthews, R.
PDB entry 9eg6: Crystal structure of the human Cavin1 HR1 HT/II mutant domain bound to nanobody B7
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-11-20
Authors: Collins, B.M., Gao, Y.
PDB entry 9eg7: X-ray diffraction structure of papain co-crystallized with E64-C
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-11-20
Authors: Vlahakis, N.W., Rodriguez, J.A., Tang, Y.
PDB entry 9eg8: Cryo-EM structure of COP9 signalosome precatalytic state with neddylated cullin-4A
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-11-21
Authors: Shi, H., Zheng, N.
PDB entry 9eg9: Crystal structure of human dihydroorotate dehydrogenase in complex with lapachol
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2024-11-21
Authors: Purificacao, A.D., Benz, L.S., Weiss, M.S., Nonato, M.C.
PDB entry 9ega: Crystal Structure of a CE20 carbohydrate acetylesterase from Pedobacter psychrotolerans (PpCE20_II), with ancillary domain
Classification: HYDROLASE
Source organism: Pedobacter psychrotolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-11-21
Authors: Vieira, P.S., Morais, M.A.B., Murakami, M.T.
PDB entry 9egb: AclA from Tenacibaculum discolor in complex with substrate
Classification: TRANSFERASE
Source organism: Tenacibaculum discolor
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-11-21
Authors: Shirkey, J.D., Jeffrey, P.D., Linares-Otoya, L., Khatri Chhetri, B., Donia, M.S., Hughson, F.M.
PDB entry 9egc: AclA from Tenacibaculum discolor in complex with the C8-N-acyl cyclolysine reaction product (C8-ACL)
Classification: TRANSFERASE
Source organism: Tenacibaculum discolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2024-11-21
Authors: Shirkey, J.D., Jeffrey, P.D., Linares-Otoya, L., Khatri Chhetri, B., Donia, M.S., Hughson, F.M.
PDB entry 9egd: AclA from Tenacibaculum discolor in complex with intermediate formed by C8-Lysine attack on ADP
Classification: TRANSFERASE
Source organism: Tenacibaculum discolor
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2024-11-21
Authors: Shirkey, J.D., Jeffrey, P.D., Linares-Otoya, L., Khatri Chhetri, B., Donia, M.S., Hughson, F.M.
PDB entry 9ege: BSEP Apo Structure in GDN
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-11-21
Authors: Reddy, B.G., Gruget, C., Moore, J.
PDB entry 9egf: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-589
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-11-21
Authors: Erdogan, F., Seo, H.-S., Dhe-Paganon, S.
PDB entry 9egg: The deep-primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-11-21
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9egh: Crystal Structure of EgtUC binding domain mutant I243A bound to L-Ergothioneine from S. pneumoniae
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus pneumoniae D39
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2024-11-21
Authors: Legg, K.A., Gonzalez-Gutierrez, G., Giedroc, D.P.
PDB entry 9egi: Crystal Structure of EgtUC binding domain mutant T274G bound to L-Ergothioneine from S. pneumoniae
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus pneumoniae D39
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-11-21
Authors: Legg, K.A., Gonzalez-Gutierrez, G., Giedroc, D.P.
PDB entry 9egj: Crystal Structure of EgtUC binding domain mutant I243P bound to L-Ergothioneine from S. pneumoniae
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus pneumoniae D39
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-11-21
Authors: Legg, K.A., Gonzalez-Gutierrez, G., Giedroc, D.P.
PDB entry 9egk: E3 ubiquitin ligase HUWE1 homolog Tom1p in closed-conformation with internal Acidic Domain deletion
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-11-21
Authors: Madrigal, J.M.
PDB entry 9egl: Cryo-EM structure of COP9 signalosome precatalytic state with neddylated cullin-3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2024-11-21
Authors: Shi, H., Zheng, N.
PDB entry 9egm: Human BEST1 bound to GABA in an open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-11-21
Authors: Pant, S., Long, S.B.
PDB entry 9egn: Crystal structure of the human Cavin1 HR1 domain bound to nanobody B7
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-11-21
Authors: Collins, B.M., Gao, Y.
PDB entry 9ego: Cannabinoid receptor 1-Gi complex with novel ligand
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-21
Authors: Tummino, T.A., Iliopoulos-Tsoutsouvas, C., Braz, J.M., O'Brien, E.S., Krishna Kumar, K., Makriyannis, M., Basbaum, A.I., Shoichet, B.K.
PDB entry 9egp: Cryo-EM of type IV pilus from Geobacter metallireducens
Classification: PROTEIN FIBRIL
Source organism: Geobacter metallireducens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-11-21
Authors: Egorova, M., Petersen, H.A., Chan, C.H., Bond, D.R., Wang, F.
PDB entry 9egq: Human BEST1 bound to GABA in an intermediate state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-11-21
Authors: Pant, S., Long, S.B.
PDB entry 9egr: Crystal structure of oxidised E.coli DsbA in complex with allene
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2024-11-21
Authors: Balaji, G.R., Tasdan, Y., Ilyichova, O.V., Akhtar, N., Scanlon, M.J.
PDB entry 9egs: Human BEST1 in an inactivated state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-11-21
Authors: Pant, S., Long, S.B.
PDB entry 9egt: Human BEST1 in an open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-11-21
Authors: Pant, S., Long, S.B.
PDB entry 9egu: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-599
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2024-11-21
Authors: Erdogan, F., Seo, H.-S., Dhe-Paganon, S.
PDB entry 9egv: HOIL-1 RING2 domain bound to ubiquitin
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-11-21
Authors: Wang, X.S., Lechtenberg, B.C.
PDB entry 9egw: HOIL-1 RING2 domain bound to ubiquitin-maltose (maltose not modelled)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-11-21
Authors: Wang, X.S., Lechtenberg, B.C.
PDB entry 9egx: RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-hexasome, bp +27
Classification: TRANSCRIPTION, TRANSFERASE/RNA/DNA
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-21
Authors: Markert, J., Farnung, L.
PDB entry 9egy: RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-nucleosome, bp +27
Classification: TRANSCRIPTION, TRANSFERASE/RNA/DNA
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-21
Authors: Markert, J., Farnung, L.
PDB entry 9egz: RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, bp +27
Classification: TRANSCRIPTION, TRANSFERASE/RNA/DNA
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-21
Authors: Markert, J.W., Farnung, L.
PDB entry 9eh0: RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 30 bp upstream
Classification: TRANSCRIPTION, TRANSFERASE/RNA/DNA
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-11-21
Authors: Markert, J., Farnung, L.
PDB entry 9eh1: RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 20 bp upstream
Classification: TRANSCRIPTION, TRANSFERASE/RNA/DNA
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-21
Authors: Markert, J., Farnung, L.
PDB entry 9eh2: RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-FACT nucleosome upstream
Classification: TRANSCRIPTION, TRANSFERASE/RNA/DNA
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-21
Authors: Markert, J., Farnung, L.
PDB entry 9eh3: Co-MAHF-9 A8Q Metal Alpha-Helix Frameworks
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.8 Å
Deposited: 2024-11-21
Authors: Richardson-Matthews, R.M.
PDB entry 9eh4: Solution structure of alpha conotoxin LvID
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2024-11-22
Authors: Harvey, P.J., Craik, D.J.
PDB entry 9eh5: Structure of a mutated photosystem II complex reveals changes to the hydrogen-bonding network that affect proton egress during O-O bond formation
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.97 Å
Deposited: 2024-11-22
Authors: Flesher, D.A., Shin, J., Debus, R.J., Brudvig, G.W.
PDB entry 9eh6: Crystal Structure of AroC
Classification: HYDROLASE
Source organism: Caldilinea aerophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-11-22
Authors: Hu, Z., Klupt, K., Zechel, D., Jia, Z., Howe, G.
PDB entry 9eh8: Structure of the prefusion HKU5-19s Spike trimer (conformation 2)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Pipistrellus bat coronavirus HKU5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2024-11-22
Authors: Park, Y.J., Gen, R., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9eh9: Crystal structure of unbound N-SH2 domain of SHP2
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-11-22
Authors: Padua, R.A.P., Glaser, A., Ojoawo, A., Kern, D.
PDB entry 9eha: Crystal structure of N-SH2 domain of SHP2 bound to phosphotyrosine
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-11-22
Authors: Padua, R.A.P., Glaser, A., Ojoawo, A., Kern, D.
PDB entry 9ehd: Crystal structure of N-SH2 domain of SHP2 bound to GAB1 tyrosine phosphorylated peptide (624-633) QVEpYLDLDLD
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-11-22
Authors: Padua, R.A.P., Glaser, A., Ojoawo, A., Kern, D.
PDB entry 9ehf: FnCas9 perfect match DNA product state
Classification: Hydrolase/DNA/RNA
Source organism: Francisella tularensis subsp. novicida; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-11-22
Authors: Hibshman, G.N., Taylor, D.W.
PDB entry 9ehg: FnCas9 perfect match DNA product state no RuvC
Classification: Hydrolase/RNA/DNA
Source organism: Francisella tularensis subsp. novicida; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-11-22
Authors: Hibshman, G.N., Taylor, D.W.
PDB entry 9ehh: FnCas9 perfect match DNA non-productive state
Classification: Hydrolase/RNA/DNA
Source organism: Francisella tularensis subsp. novicida; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-22
Authors: Hibshman, G.N., Taylor, D.W.
PDB entry 9ehi: Crystal structure of ENL YEATS in complex with histone H3 methacrylated at K18
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-11-22
Authors: Becht, D.C., Selvam, K., Kutateladze, T.G.
PDB entry 9ehl: Structure of HIV-1 BG505 SOSIP.664 Env trimer in complex with IOMAmin5 and 10-1074 Broadly Neutralizing Antibodies - Class I
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-11-23
Authors: Dam, K.A., Yang, Z., Bjorkman, P.J.
PDB entry 9ehm: Structure of HIV-1 BG505 SOSIP.664 Env trimer in complex with IOMAmin5 and 10-1074 Broadly Neutralizing Antibodies - Class II
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-11-23
Authors: Dam, K.A., Yang, Z., Bjorkman, P.J.
PDB entry 9ehn: Co-MAHF-9 A8T Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2024-11-23
Authors: Richardson-Matthews, R.M.
PDB entry 9ehp: Co-MAHF-9 A8C Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2024-11-24
Authors: Richardson-Matthews, R.M.
PDB entry 9ehq: Co-MAHF-9 A8M Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2024-11-24
Authors: Richardson-Matthews, R.M.
PDB entry 9ehr: FnCas9 perfect match DNA non-productive state no RuvC
Classification: Hydrolase/RNA/DNA
Source organism: Francisella tularensis subsp. novicida; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-24
Authors: Hibshman, G.N., Taylor, D.W.
PDB entry 9ehs: Structure of a human adenosine A3 receptor complex bound to the covalent antagonist LUF7602
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-24
Authors: Zhang, L., Mobbs, J.I., Glukhova, A., Thal, D.M.
PDB entry 9eht: Crystal Structure of PD-1/retifanlimab complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.544 Å
Deposited: 2024-11-25
Authors: Heo, Y.-S.
PDB entry 9ehu: Crystal structure of the Gamak virus attachment protein head domain
Classification: VIRAL PROTEIN
Source organism: Parahenipavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-11-25
Authors: Lindenberger, J., Acharya, P.
PDB entry 9ehw: FnCas9 16 mismatch DNA non-productive state
Classification: Hydrolase/RNA/DNA
Source organism: Francisella tularensis subsp. novicida; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-11-25
Authors: Hibshman, G.N., Taylor, D.W.
PDB entry 9ehx: FnCas9 16 mismatch DNA product state
Classification: Hydrolase/RNA/DNA
Source organism: Francisella tularensis subsp. novicida; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-25
Authors: Hibshman, G.N., Taylor, D.W.
PDB entry 9ehy: X-ray crystal structure of ADC-33 beta-lactamase in complex with ceftazidime in acyl and product forms
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-11-25
Authors: Powers, R.A., Wallar, B.J., Jarvis, H.R., Ziegler, Z.X., June, C.M.
PDB entry 9ehz: Cryo-EM structure of Human RNA polymerase II Elongation Complex in an Intermediate Translocation State
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-11-25
Authors: Florez Ariza, A., Lue, N., Nogales, E.
PDB entry 9ei0: Human Kv1.3 mutant - G427H with A0194009G09 nanobodies
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-11-25
Authors: Selvakumar, P., Swartz, K.J.
PDB entry 9ei1: Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the absence of nucleotide
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-25
Authors: Florez Ariza, A., Lue, N., Nogales, E.
PDB entry 9ei2: Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to an apo RECQL5 helicase (RECQL5 IRI Module focused-classified)
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-11-25
Authors: Florez Ariza, A., Lue, N., Nogales, E.
PDB entry 9ei3: Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the presence of AMPPNP
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-25
Authors: Florez Ariza, A., Lue, N., Nogales, E.
PDB entry 9ei4: Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the presence of ADP
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-11-25
Authors: Florez Ariza, A., Lue, N., Nogales, E.
PDB entry 9ei5: Cryo-EM structure of Apo form of prostaglandin D2 receptor (DP1)-bRIL-Fab complex
Classification: MEMBRANE PROTEIN/Immune System
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-11-25
Authors: Davoudinasab, B., Cherezov, V., Han, G.W.
PDB entry 9ei6: PasI from Photorhabdus asymbiotica bound to Fe(II) and alpha-ketoglutarate
Classification: OXIDOREDUCTASE
Source organism: Photorhabdus asymbiotica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2024-11-25
Authors: Dong, J., Boal, A.K.
PDB entry 9ei7: PasI from Photorhabdus asymbiotica bound to vanadyl, succinate, and 5-amino-6-hydroxy-octanosyl acid 2-phosphate
Classification: OXIDOREDUCTASE
Source organism: Photorhabdus asymbiotica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-11-25
Authors: Dong, J., Boal, A.K., Lin, C.-Y.
PDB entry 9ei8: Cryo-EM structure of 5E10 Fab in complex with H3 influenza Singapore 2016 HA trimer
Classification: IMMUNE SYSTEM
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2024-11-25
Authors: Gorman, J., Kwong, P.D.
PDB entry 9ei9: Cryo-EM structure of 5E10 Fab in complex with H3 influenza Victoria 2011 HA trimer
Classification: IMMUNE SYSTEM
Source organism: Influenza A virus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2024-11-25
Authors: Gorman, J., Kwong, P.D.
PDB entry 9eia: A broad-substrate spectrum lactate racemase A from Isosphaera pallida in complex with copurified D-lactate
Classification: ISOMERASE
Source organism: Isosphaera pallida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-11-25
Authors: Gatreddi, S., Hausinger, R.P., Hu, J.
PDB entry 9eib: Structure of Myroides odoratus prophage anti-Thoeris 2 (ModTad2) in complex with hisADPR
Classification: VIRAL PROTEIN
Source organism: Myroides odoratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2024-11-25
Authors: Chang, R.B., Kranzusch, P.J.
PDB entry 9eic: Crystal structure of unbound N-SH2 domain of SHP2 with T42A mutation
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2024-11-25
Authors: Padua, R.A.P., Glaser, A., Ojoawo, A., Kern, D.
PDB entry 9eid: A broad-substrate spectrum lactate racemase A from Isosphaera pallida in complex with D-2-Hydroxybutyrate
Classification: ISOMERASE
Source organism: Isosphaera pallida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2024-11-25
Authors: Gatreddi, S., Hausinger, R.P., Hu, J.
PDB entry 9eie: Trypanosomatid-specific protein of unknown function
Classification: UNKNOWN FUNCTION
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-11-25
Authors: Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
PDB entry 9eif: A broad-substrate spectrum lactate racemase A from Isosphaera pallida in complex with D-2-Hydroxyisovalerate
Classification: ISOMERASE
Source organism: Isosphaera pallida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-11-25
Authors: Gatreddi, S., Hausinger, R.P., Hu, J.
PDB entry 9eih: Import stalled PINK1 TOM complex
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-26
Authors: Kirk, N.S., Glukhova, A., Callegari, S., Komander, D.
PDB entry 9eii: Import stalled PINK1 TOM complex, symmetry expanded
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-11-26
Authors: Kirk, N.S., Glukhova, A., Callegari, S., Komander, D.
PDB entry 9eij: Import stalled PINK1 TOM complex, extended TOM20 helix class
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-11-26
Authors: Kirk, N.S., Glukhova, A., Callegari, S., Komander, D.
PDB entry 9eik: Crystal structure of N-SH2 domain of SHP2 with T42A mutation bound to GAB1 tyrosine phosphorylated peptide (624-633) QVEpYLDLDLD
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-11-26
Authors: Padua, R.A.P., Glaser, A., Ojoawo, A., Kern, D.
PDB entry 9eil: SIRT6 bound to an H3K27Ac nucleosome
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-26
Authors: Markert, J., Wang, Z., Cole, P., Farnung, L.
PDB entry 9eio: Cryo-EM structure of the mutant KCa2.2_F244S channel
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2024-11-26
Authors: Nam, Y.W., Zhang, M.
PDB entry 9eir: Ethylene-forming enzyme apoprotein from Penicillium digitatum
Classification: OXIDOREDUCTASE
Source organism: Penicillium digitatum Pd1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2024-11-26
Authors: Chatterjee, S., Rankin, J.A., Farrugia, M.A., Hu, J., Hausinger, R.P.
PDB entry 9eis: Ethylene forming enzyme in complex with manganese and 2-oxoglutarate from Penicillium digitatum
Classification: OXIDOREDUCTASE
Source organism: Penicillium digitatum Pd1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-11-26
Authors: Chatterjee, S., Rankin, J.A., Farrugia, M.A., Hu, J., Hausinger, R.P.
PDB entry 9eit: NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 4 Fabs
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-11-26
Authors: Borst, A.J.
PDB entry 9eiu: Crystal structure of the human Cavin1 HR1 TS/DD mutant domain bound to nanobody B7
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2024-11-26
Authors: Collins, B.M., Gao, Y.
PDB entry 9eiv: Rat cytosolic PEPCK in complex with GDP and phosphoglycolic acid (253K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9eiw: Rat cytosolic PEPCK in complex with GDP and phosphoglycolic acid (273K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9eix: Rat cytosolic PEPCK in complex with GDP and phosphoglycolic acid (293K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9eiy: Rat cytosolic PEPCK in complex with GDP and phosphoglycolic acid (313K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9eiz: Rat cytosolic PEPCK in complex with GTP and oxalate (253K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9ej0: Rat cytosolic PEPCK in complex with GTP and oxalate (273K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9ej1: Rat cytosolic PEPCK in complex with GTP and oxalate (293K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9ej2: Rat cytosolic PEPCK in complex with GTP and oxalate (293K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9ej3: Rat cytosolic PEPCK in complex with GTP and beta-sulfopyruvate (253K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9ej4: Rat cytosolic PEPCK in complex with GTP and beta-sulfopyruvate (273K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9ej5: Rat cytosolic PEPCK in complex with GTP and beta-sulfopyruvate (293K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9ej6: Rat cytosolic PEPCK in complex with GTP and beta-sulfopyruvate (293K)
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-11-27
Authors: McLeod, M.J., Barwell, S.A.E., Holyoak, T., Thorne, R.E.
PDB entry 9ej8: Structure of the Lactate Monooxygenase mutant Y44N, Y152F, H290S, T181A, F184P
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-11-27
Authors: Liu, Y., Sorigue, D., Jeffrey, P.D., Hyster, T.
PDB entry 9ejc: Cryo-EM Structure of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Classification: VIRAL PROTEIN/SIGNALING PROTEIN
Source organism: Homo sapiens; Human gammaherpesvirus 8; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-11-27
Authors: Sahoo, B., Seo, H.D., Dai, X., Jung, J.
PDB entry 9eje: NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 3 Fabs
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2024-11-27
Authors: Borst, A.J.
PDB entry 9ejf: NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C4 Reconstruction]
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2024-11-27
Authors: Borst, A.J.
PDB entry 9ejg: Peptide-independent T cell receptor recognition of HLA-DQ2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-11-27
Authors: Lim, J.J., Loh, T.J., Reid, H.H., Rossjohn, J.
PDB entry 9ejh: Peptide-independent T cell receptor recognition of HLA-DQ2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-11-27
Authors: Lim, J.J., Loh, T.J., Reid, H.H., Rossjohn, J.
PDB entry 9eji: Peptide-independent T cell receptor recognition of HLA-DQ2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-11-27
Authors: Lim, J.J., Loh, T.J., Reid, H.H., Rossjohn, J.