LiteFold/PDB huggingface dataset:
PDB entry 8xxs: Crystal structure of PDE4D catalytic domain complexed with L11
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.10001 Å
Deposited: 2024-01-19
Authors: Wu, D., Huang, Y.-Y., Luo, H.-B.
PDB entry 8xxt: ASFV RNAP M1249L C-tail occupied complex2 (MCOC2)
Classification: TRANSCRIPTION
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2024-01-19
Authors: Zhu, G.L., Zhu, Y., Zhu, Z.X., Sun, F., Zheng, H.X.
PDB entry 8xxu: Cryo-EM Structure of the Prostaglandin D2 Receptor 2 Coupled to G Protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-01-19
Authors: Xu, J., Xu, Y., Wu, C., Xu, H.E.
PDB entry 8xxv: Cryo-EM Structure of the Prostaglandin D2 Receptor 2-indomethacin Coupled to G Protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2024-01-19
Authors: Xu, J., Xu, Y., Wu, C., Xu, H.E.
PDB entry 8xxw: Fab M2-7 complexed with SARS-Cov2 RBD and human ACE2
Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-01-19
Authors: Liu, C., Xie, Y.
PDB entry 8xxx: Structure of CXCR2 bound to CXCL6 (Composite map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-01-19
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xxy: Structure of CXCR3 in the apo-state (Receptor focused map)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-01-19
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xxz: Structure of CXCR3 in the apo-state (Full map)
Classification: SIGNALING PROTEIN/IMMUNE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-19
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xy0: Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR
Classification: HYDROLASE
Source organism: Bacillus sp. TAR1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-01-19
Authors: Nakamura, T., Takita, T., Mizutani, K., Mikami, B., Nakamura, S., Yasukawa, K.
PDB entry 8xy1: Crystal structure of MPXV P1 protein
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.575 Å
Deposited: 2024-01-19
Authors: Ni, X.C., Lei, J.
PDB entry 8xy2: Crystal structure of MPXV P1 protein S87P mutant
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2024-01-19
Authors: Ni, X.C., Lei, J.
PDB entry 8xy3: Crystal structure of VARV P1 protein
Classification: VIRAL PROTEIN
Source organism: Variola virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-01-19
Authors: Ni, X.C., Lei, J.
PDB entry 8xy4: Crystal structure of VACV N1 protein
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-01-19
Authors: Ni, X.C., Lei, J.
PDB entry 8xy5: Open conformation of Burkholderia stagnalis lipase
Classification: HYDROLASE
Source organism: Burkholderia stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.399 Å
Deposited: 2024-01-19
Authors: Kataoka, S., Kubota, T., Ishikawa, K.
PDB entry 8xy6: ASFV RNAP M1249L C-tail occupied complex3 (MCOC3)
Classification: TRANSCRIPTION
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-19
Authors: Zhu, G.L., Zhu, Y., Zhu, Z.X., Sun, F., Zheng, H.X.
PDB entry 8xy7: hPhK alpha-gamma subcomplex in active state
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-19
Authors: Yang, X.K., Xiao, J.Y.
PDB entry 8xy8: a beta-lactamase - AmpC
Classification: HYDROLASE
Source organism: Paraburkholderia xenovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-01-19
Authors: Ma, W.Z., Song, W.
PDB entry 8xy9: Crystal structure of SARS-CoV-2 BF.7 RBD and human ACE2 complex
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.64 Å
Deposited: 2024-01-19
Authors: Lan, J., Wang, C.H.
PDB entry 8xya: hPhK alpha-beta-gamma-delta subcomplex in inactive state
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-19
Authors: Yang, X.K., Xiao, J.Y.
PDB entry 8xyb: hPhK gamma-delta subcomplex in inactive state
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-19
Authors: Yang, X.K., Xiao, J.Y.
PDB entry 8xyc: Ternary structure of dVemCas12e-sgRNA-dsDNA
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Verrucomicrobiota; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2024-01-19
Authors: Zhang, S., Lin, S., Liu, J.J.G.
PDB entry 8xyd: Structure of Platelet-activating factor receptor-G protein complex bound to platelet-activating factor
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-19
Authors: Fan, W., Xu, Y., Zhuang, Y., Xu, H.E.
PDB entry 8xye: Crystal structure of SARS-CoV-2 BA.4 RBD and human ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2024-01-19
Authors: Lan, J., Wang, C.H.
PDB entry 8xyf: Crystal structure of Holo-PlyGRCS, a bacteriophage Endolysin in complex with Cold shock protein C
Classification: ANTIMICROBIAL PROTEIN
Source organism: Escherichia coli K-12; Staphylococcus phage GRCS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2024-01-19
Authors: Padmanabhan, B., Gopinath, K., Harshitha, H.N.
PDB entry 8xyg: Crystal structure of SARS-CoV-2 BQ.1.1 RBD and human ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.64 Å
Deposited: 2024-01-19
Authors: Lan, J., Wang, C.H.
PDB entry 8xyh: Cryo-EM structure of BANAL-20-52 spike protein (6P)
Classification: VIRAL PROTEIN
Source organism: Coronavirinae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-01-19
Authors: Xu, Z.P., Li, L.J., Gu, Y.H., Qi, J.X., Gao, G.F.
PDB entry 8xyi: Structure of CXCR3 in complex with VUF10661 (Receptor-ligand focused map)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-01-19
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xyj: Structure of y+LAT1 bound with Lys
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-01-19
Authors: Yan, R.H., Dai, L., Zhang, T.
PDB entry 8xyk: Structure of CXCR3 in complex with VUF10661 and Go (Full map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-01-19
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8xyl: Cryo-EM structure of Tetrahymena DNA methyltransferase complex MTA1c
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2024-01-19
Authors: Xu, Q., Shi, Z.B.
PDB entry 8xym: Cryo-EM structure of CX1 spike protein (6P)
Classification: VIRAL PROTEIN
Source organism: Coronavirinae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-01-20
Authors: Xu, Z.P., Li, L.J., Gu, Y.H., Qi, J.X., Gao, G.F.
PDB entry 8xyn: Structure of the engineered retro-aldolase RA95.5-8
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-20
Authors: Kunthic, T., Yu, M.Z., Xiang, Z.
PDB entry 8xyo: Cryo-EM structure of CX1 receptor binding domain in complex with human ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-01-20
Authors: Xu, Z.P., Li, L.J., Gu, Y.H., Qi, J.X., Gao, G.F.
PDB entry 8xyp: Cryo-EM structure of SAH-bound Tetrahymena DNA methyltransferase complex MTA1c
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-01-20
Authors: Xu, Q., Shi, Z.B.
PDB entry 8xyq: Cryo-EM structure of SAM-bound Tetrahymena DNA methyltransferase complex MTA1c
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-20
Authors: Xu, Q., Shi, Z.B.
PDB entry 8xyr: De novo designed protein GPX4-2
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-01-20
Authors: Liu, L.J., Guo, Z., Lai, L.H.
PDB entry 8xys: De novo designed protein GPX4-1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-01-20
Authors: Liu, J.L., Guo, Z., Lai, L.H.
PDB entry 8xyt: De novo designed protein GPX4-4
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-01-20
Authors: Liu, J.L., Guo, Z., Lai, L.H.
PDB entry 8xyu: De novo designed protein GPX4-3
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-01-20
Authors: Guo, Z., Liu, J.L., Lai, L.H.
PDB entry 8xyv: De novo designed protein 0705-5
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2024-01-20
Authors: Liu, J.L., Guo, Z., Lai, L.H.
PDB entry 8xyw: De novo designed protein Trx-3
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2024-01-20
Authors: Liu, J.L., Guo, Z., Lai, L.H.
PDB entry 8xyx: Cryo-EM structure of SAM-bound Tetrahymena DNA methyltransferase complex MTA1c (D209A)
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-20
Authors: Xu, Q., Shi, Z.B.
PDB entry 8xyz: The structure of fox ACE2 and PT RBD complex
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vulpes vulpes
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-01-20
Authors: sun, J.Q.
PDB entry 8xz0: Crystal complex structure of SARS-CoV-2 S bound to human ezrin
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.035 Å
Deposited: 2024-01-20
Authors: Wang, J.M., Ma, W.F.
PDB entry 8xz2: The structural model of a homodimeric D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria
Classification: METAL BINDING PROTEIN
Source organism: Enterococcus faecium
Experimental method: SOLUTION NMR
Deposited: 2024-01-20
Authors: Konuma, T., Takai, T., Tsuchiya, C., Nishida, M., Hashiba, M., Yamada, Y., Shirai, H., Motoda, Y., Nagadoi, A., Chikaishi, E., Akagi, K., Akashi, S., Yamazaki, T., Akutsu, H., Oe, A., Ikegami, T.
PDB entry 8xz3: Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-01-20
Authors: Srinivasan, K., Banerjee, A., Sengupta, J.
PDB entry 8xz4: SARS-CoV-2 S and radixin complex structure
Classification: VIRAL PROTEIN/PROEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.129 Å
Deposited: 2024-01-20
Authors: Wang, J.M., Ma, W.F.
PDB entry 8xz5: SARS-CoV-2 S and moesin complex structure
Classification: VIRAL PROEIN/PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-01-20
Authors: Wang, J.M., Ma, W.F.
PDB entry 8xz6: MERS-CoV S and radixin complex structure
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-01-20
Authors: Wang, J.M., Ma, W.F.
PDB entry 8xz7: FGFR1 kinase domain with a covalent inhibitor 10h
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-01-20
Authors: Chen, X.J., Chen, Y.H.
PDB entry 8xz8: BA.2.86 Spike in complex with bovine ACE2 (bound 1 ACE2)
Classification: VIRAL PROTEIN
Source organism: Bos taurus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-01-21
Authors: Yue, C., Liu, P.
PDB entry 8xz9: BA.2.86 Spike in complex with bovine ACE2 (bound 2 ACE2)
Classification: VIRAL PROTEIN
Source organism: Bos taurus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-01-21
Authors: Yue, C., Liu, P.
PDB entry 8xza: BA.2.86 Spike in complex with bovine ACE2 (Local refinement)
Classification: VIRAL PROTEIN
Source organism: Bos taurus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2024-01-21
Authors: Yue, C., Liu, P.
PDB entry 8xzb: The structure of fox ACE2 and SARS-CoV RBD complex
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome-related coronavirus; Vulpes vulpes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-01-21
Authors: sun, J.Q.
PDB entry 8xzc: Crystal structure of human cytosolic beta-alanyl lysine dipeptidase (PM20D2) Tyr314Phe mutant
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-01-21
Authors: Chandravanshi, K., Kumar, A., Makde, R.D.
PDB entry 8xzd: The structure of fox ACE2 and Omicron BF.7 RBD complex
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vulpes vulpes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-01-21
Authors: sun, J.Q.
PDB entry 8xze: Crystal structure of THF-II riboswitch with THF and soaked with Ir
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzf: Cryo-EM structure of the WN561-bound human APLNR-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-21
Authors: Wang, W., Ji, S., Zhang, Y.
PDB entry 8xzg: Cryo-EM structure of the [Pyr1]-apelin-13-bound human APLNR-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-21
Authors: Wang, W., Ji, S., Zhang, Y.
PDB entry 8xzh: Cryo-EM structure of the MM07-bound human APLNR-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-01-21
Authors: Wang, W., Ji, S., Zhang, Y.
PDB entry 8xzi: Cryo-EM structure of the CMF-019-bound human APLNR-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-21
Authors: Wang, W., Ji, S., Zhang, Y.
PDB entry 8xzj: Cryo-EM structure of the WN353-bound human APLNR-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-21
Authors: Wang, W., Ji, S., Zhang, Y.
PDB entry 8xzk: Crystal structure of folE riboswitch
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzl: Crystal structure of folE riboswitch with DHF
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzm: Crystal structure of folE riboswitch with DHN
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzn: Crystal structure of folE riboswitch with BH4
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzo: Crystal structure of folE riboswitch with Guanine
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzp: Crystal structure of folE riboswitch with 8-CH3 Guanine
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzq: Crystal structure of folE riboswitch with 8-N Guanine
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzr: Crystal structure of folE riboswitch with 8-NH2 Guanine
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzu: HosA transcriptional regulator from enteropathogenic Escherichia coli O127:H6 (strain E2348/69) bound with 4-hydroxy benzoic acid - Conformation II at 2.33 angstrom resolution
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O127:H6 str. E2348/69
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-01-21
Authors: Manjunath, K., Goswami, A.
PDB entry 8xzv: Architecture of the spinach plastid-encoded RNA polymerase
Classification: TRANSCRIPTION
Source organism: Spinacia oleracea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-01-21
Authors: Wang, G.-L., Yu, L.-J., Lu, C.
PDB entry 8xzw: Crystal structure of THF-II riboswitch with THF and soaked with Ir
Classification: RNA
Source organism: unidentified eubacterium clone A70
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-01-21
Authors: Li, C.Y., Ren, A.M.
PDB entry 8xzx: Structure of an engineered xylanase Xyl-1 M4
Classification: HYDROLASE
Source organism: Aspergillus terreus (strain NIH 2624 / FGSC A1156)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-21
Authors: Xiang, W.L., Huang, J.-W., Yang, Y., Chen, C.-C., Guo, R.-T.
PDB entry 8xzy: Structure of a xylanase Xyl-1 M4 mutant E175A
Classification: HYDROLASE
Source organism: Aspergillus terreus (strain NIH 2624 / FGSC A1156)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-01-21
Authors: Xiang, W.L., Huang, J.-W., Yang, Y., Chen, C.-C., Guo, R.-T.
PDB entry 8xzz: Structure of a xylanase Xyl-1 M4 E175A in complex with xylobiose
Classification: HYDROLASE
Source organism: Aspergillus terreus NIH2624
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-01-21
Authors: Xiang, W.L., Huang, J.-W., Yang, Y., Chen, C.-C., Guo, R.-T.
PDB entry 8y00: Structure of a xylanase Xyl-1 M4 mutant E175A in complex with xylotriose
Classification: HYDROLASE
Source organism: Aspergillus terreus NIH2624
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-01-21
Authors: Xiang, W.L., Huang, J.-W., Yang, Y., Chen, C.-C., Guo, R.-T.
PDB entry 8y01: Cryo-EM structure of Medium-wave-sensitive opsin 1
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2024-01-21
Authors: Peng, Q., Jiang, H.H., Cheng, X.Y., Li, J., Zhang, J.
PDB entry 8y02: Cryo-EM structure of Short-wave-sensitive opsin 1
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-01-21
Authors: Peng, Q., Jiang, H.H., Cheng, X.Y., Li, J., Zhang, J.
PDB entry 8y03: Crystal structure of LbCas12a-crRNA complex
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y04: Crystal structure of LbCas12a in complex with crRNA and 6nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.71 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y05: Crystal structure of LbCas12a in complex with crRNA and 9nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y06: Crystal structure of LbCas12a in complex with crRNA and 12nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.99 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y07: Crystal structure of LbCas12a in complex with crRNA and 13nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y08: Crystal structure of LbCas12a in complex with crRNA and 14nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.64 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y09: Crystal structure of LbCas12a in complex with crRNA and 15nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y0a: Crystal structure of LbCas12a in complex with crRNA and 18nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y0b: Crystal structure of FnCas12a in complex with pre-crRNA and 12nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Francisella tularensis subsp. novicida U112; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-22
Authors: Lin, X., Chen, J., Liu, L.
PDB entry 8y0c: Crystal structure of FnCas12a in complex with pre-crRNA and 18nt target DNA
Classification: RNA BINDING PROTEIN
Source organism: Francisella tularensis subsp. novicida U112; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2024-01-22
Authors: Chen, J., Liu, L.
PDB entry 8y0d: Crystal structure of SauCas9 in complex with sgRNA and 20nt ssDNA target
Classification: RNA BINDING PROTEIN
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.92 Å
Deposited: 2024-01-22
Authors: Chen, Y., Chen, J., Liu, L.
PDB entry 8y0e: ASFV RNAP M1249L C-tail occupied complex4 (MCOC4)
Classification: TRANSCRIPTION
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-22
Authors: Zhu, G.L., Zhu, Y., Zhu, Z.X., Sun, F., Zheng, H.X.
PDB entry 8y0f: Solution NMR structure of the PTK7-binding DNA aptamer sgc8c
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2024-01-22
Authors: He, A., Wan, L., Guo, P., Han, D.
PDB entry 8y0g: Human beta-catenin crystal structure
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-22
Authors: Tim, F.
PDB entry 8y0h: Structure of CXCR3 in complex with VUF11418 (Receptor-ligand focused map)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-01-22
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8y0l: beta-glucosidase from Thermoascus aurantiacus
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-01-22
Authors: Matsuzaki, C., Katayama, T.
PDB entry 8y0m: beta-glucosidase mutant M279V_T308S_K361R_D433N_N514C
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-22
Authors: Matsuzaki, C., Katayama, T.
PDB entry 8y0n: Structure of CXCR3 in complex with VUF11418 and Go (Full map)
Classification: SIGNALING PROTEIN/IMMUNE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-01-22
Authors: Sano, F.K., Saha, S., Sharma, S., Ganguly, M., Shihoya, W., Nureki, O., Shukla, A.K., Banerjee, R.
PDB entry 8y0p: Beta-Catenin in complex with peptide 301
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2024-01-22
Authors: Tim, F.
PDB entry 8y0q: Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Foot-and-mouth disease virus O; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2024-01-23
Authors: Wu, S., Lei, D.
PDB entry 8y0r: Complex of FMDV A/WH/CHA/09 and inter-serotype broadly neutralizing antibodies pOA-2
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Foot-and-mouth disease virus A; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2024-01-23
Authors: Wu, S., Lei, D.
PDB entry 8y0u: dormant ribosome with STM1
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2024-01-23
Authors: Du, M., Zeng, F.
PDB entry 8y0v: HIF prolyl hydroxylase 2 in complex with inhibitor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-23
Authors: Ding, X., Fan, Y.
PDB entry 8y0w: dormant ribosome with eIF5A, eEF2 and SERBP1
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-01-23
Authors: Du, M., Zeng, F.
PDB entry 8y0x: Dormant ribosome with SERBP1
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-23
Authors: Du, M., Zeng, F.
PDB entry 8y0y: Cryo-EM structure of the 123-316 scDb/PT-RBD complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-01-23
Authors: Jia, G.W., Tong, Z., Tong, J.Y., Su, Z.M.
PDB entry 8y11: Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase bound to NAD(H) and sulfate ion
Classification: OXIDOREDUCTASE
Source organism: Herbaspirillum huttiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-01-23
Authors: Akagashi, M., Watanabe, S.
PDB entry 8y12: NADPH complex of Imine Reductase from Pochonia chlamydosporia 170
Classification: OXIDOREDUCTASE
Source organism: Pochonia chlamydosporia 170
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-01-23
Authors: Shi, M.
PDB entry 8y13: Cryo-EM structure of anti-phage defense associated DSR2 tetramer (H171A)
Classification: IMMUNE SYSTEM
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-01-23
Authors: Li, F.X., Shi, Z.B., Wang, R.W., Xu, Q., Yang, R., Wu, Z.X.
PDB entry 8y14: Beta-catenin Crystal Structure
Classification: CHOLINE-BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-01-23
Authors: Tim, F.
PDB entry 8y15: Cryo-EM structure of Light-harvesting complex from Spinacia oleracea
Classification: PHOTOSYNTHESIS
Source organism: Spinacia oleracea
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.17 Å
Deposited: 2024-01-23
Authors: Seki, S., Miyata, T., Tanaka, H., Namba, K., Kurisu, G., Fujii, R.
PDB entry 8y16: Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein in complex with human ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-01-23
Authors: Li, L.J., Gu, Y.H., Qi, J.X., Gao, G.F.
PDB entry 8y17: Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase T89C and N187C
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus equorum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-01-23
Authors: Putri, N.A., Fadillah, M.D., Yoshida, H., Retnoningrum, D.S., Artarini, A.A., Utami, R.A., Ismaya, W.T.
PDB entry 8y18: Cryo-EM structure of SARS-CoV-2 Omicron JN.1 RBD in complex with human ACE2 (local refinement from the spike protein)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-01-23
Authors: Li, L.J., Gu, Y.H., Qi, J.X., Gao, G.F.
PDB entry 8y19: Closed conformation of HKU1-B S protein after incubation of the receptor
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1a: 1up-1 conformation of HKU1-B S protein after incubation of the receptor
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1b: 1up-2 conformation of HKU1-B S protein after incubation of the receptor
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1c: 2up-1 conformation of HKU1-B S protein after incubation of the receptor
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1d: 2up-TM conformation of HKU1-B S protein after incubation of the receptor
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1e: 3up-TM conformation of HKU1-B S protein after incubation of the receptor
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1f: The closed conformation of the HKU1-B S protein in the apo state
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1g: The 1up conformation of the HKU1-B S protein in the apo state
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1h: The 2up formation of the HKU1-B S protein in the apo state
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-01-24
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8y1i: Structure of guanosine-2''-fluorinated [d(AACCGGTT)]2
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2024-01-24
Authors: Gao, R.Q., Cao, C., Tang, G.L.
PDB entry 8y1j: Structure of the pyridoxal 5'-phosphate-dependent (PLP) threonine deaminase ilvA1 from Pseudomonas aeruginosa PAO1
Classification: LYASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-24
Authors: Jia, H., Bartlam, M.
PDB entry 8y1k: The cryo-EM structure of TdpAB in complex with AMPPNP and PT-DNA
Classification: TRANSLOCASE/DNA
Source organism: Thermus antranikianii DSM 12462; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-25
Authors: Chen, T.A., Qian, T.
PDB entry 8y1l: Cryo-EM structure of human N-terminally bound ATG9A-ATG2A-WIPI4 complex
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.05 Å
Deposited: 2024-01-25
Authors: Wang, Y., Stjepanovic, G.
PDB entry 8y1m: Xylanase R from Bacillus sp. TAR-1 complexed with xylobiose.
Classification: HYDROLASE
Source organism: Bacillus sp. TAR1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-01-25
Authors: Nakamura, T., Kuwata, K., Takita, T., Mizutani, K., Mikami, B., Nakamura, S., Yasukawa, K.
PDB entry 8y1o: Cryo-EM structure of human ABCA7 in the apo state
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2024-01-25
Authors: Fang, S.C.
PDB entry 8y1p: Cryo-EM structure of human ABCA7 in DOPS-bound state
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-01-25
Authors: Fang, S.C.
PDB entry 8y1q: Crystal structure of Aquifex aeolicus dUTPase complexed with dUMP.
Classification: HYDROLASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-01-25
Authors: Fukui, K., Murakawa, T., Yano, T.
PDB entry 8y1r: in situ room temperature Laue crystallography
Classification: LYASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-25
Authors: Wang, Z.J., Wang, S.S., Pan, Q.Y., Yu, L., Su, Z.H., Yang, T.Y., Wang, Y.Z., Zhang, W.Z., Hao, Q., Gao, X.Y.
PDB entry 8y1s: in situ room temperature Laue crystallography
Classification: LYASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-01-25
Authors: Wang, Z.J., Wang, S.S., Pan, Q.Y., Yu, L., Su, Z.H., Yang, T.Y., Wang, Y.Z., Zhang, W.Z., Hao, Q., Gao, X.Y.
PDB entry 8y1t: CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI GAMBIENSE GLYCEROL KINASE COMPLEX WITH ADP and G3P
Classification: TRANSFERASE
Source organism: Trypanosoma brucei gambiense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-25
Authors: Balogun, E.O., Inaoka, D.K., Ichinose, M., Chishima, T., Harada, S., Kita, K., Shiba, T.
PDB entry 8y1u: Crystal structure of ASB7-Elongin B/C bound to the LZTS1-degron
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-01-25
Authors: Dong, C., Yan, X., Zhou, M.
PDB entry 8y1v: Structure of GluN1b-GluN2D NMDA receptor in complex with competitive antagonist R-CPP and allosteric inhibitor YY-23
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-01-25
Authors: Zhang, J.L., Zhu, S.J., Guo, F.
PDB entry 8y1w: Crystal structure of Thermococcus pacificus dUTPase complexed with dUMP.
Classification: HYDROLASE
Source organism: Thermococcus pacificus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-01-25
Authors: Fukui, K., Murakawa, T., Yano, T.
PDB entry 8y1x: Cryo-EM structure of the aspartate:alanine antiporter AspT WT
Classification: TRANSPORT PROTEIN
Source organism: Tetragenococcus halophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-01-25
Authors: Nanatani, K., Kanno, R., Kawabata, T., Watanabe, S., Hidaka, M., Yamanaka, T., Toda, K., Fujiki, T., Kunii, K., Miyamoto, A., Chiba, F., Ogasawara, S., Murata, T., Humbel, B.M., Inaba, K., Mitsuoka, K., Guan, L., Abe, K., Yamamoto, M., Koshiba, S.
PDB entry 8y1y: Crystal structure of the Mcl-1 in complex with a long BH3 peptide of BAK
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-01-25
Authors: Wang, H., Guo, M., Wei, H., Chen, Y.
PDB entry 8y1z: Crystal structure of the Mcl-1 in complex with a Short BH3 peptide of BAK
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.914 Å
Deposited: 2024-01-25
Authors: Wang, H., Guo, M., Wei, H., Chen, Y.
PDB entry 8y20: Crystal structure of the Mcl-1 in complex with A-1210477
Classification: APOPTOSIS
Source organism: Escherichia coli O157:H7; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2024-01-25
Authors: Wang, H., Guo, M., Wei, H., Chen, Y.
PDB entry 8y21: Crystal Structure of (3R)-hydroxyacyl-ACP dehydratase HadAB hetero-dimer from Mycobacterium tuberculosis complexed with substrate Palmitoyl-CoA
Classification: LYASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.691 Å
Deposited: 2024-01-25
Authors: Ganguly, S.S., Singh, B.K., Saha, R., De, S., Das, A.K.
PDB entry 8y22: FGFR1 kinase domain with a covalent inhibitor 9g
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.792 Å
Deposited: 2024-01-25
Authors: Chen, X.J., Chen, Y.H.
PDB entry 8y23: X-ray crystal structure of ALiS4-Streptavidine complex without cryo-protectant using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y24: X-ray crystal structure of ALiS4-Streptavidine complex with 10% glycerol using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y25: X-ray crystal structure of ALiS4-Streptavidine complex with 20% glycerol using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y26: X-ray crystal structure of ALiS5-Streptavidine complex without cryo-protectant using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y27: X-ray crystal structure of ALiS5-Streptavidine complex with 10% glycerol using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y28: X-ray crystal structure of ALiS5-Streptavidine complex with 20% glycerol using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y29: X-ray crystal structure of ALiS2-Streptavidine complex without cryo-protectant using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y2a: X-ray crystal structure of ALiS2-Streptavidine complex with 10% glycerol using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y2b: X-ray crystal structure of ALiS2-Streptavidine complex with 20% glycerol using a high-pressure cryocooling method
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-01-25
Authors: Higashiura, A., Yamamoto, A., Sugiyama, S.
PDB entry 8y2c: Cryo-EM structure of human dopamine transporter in apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-01-25
Authors: Zhao, Y., Li, Y.
PDB entry 8y2d: Cryo-EM structure of human dopamine transporter in complex with dopamine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-25
Authors: Zhao, Y., Li, Y.
PDB entry 8y2e: Cryo-EM structure of human dopamine transporter in complex with benztropine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-01-25
Authors: Zhao, Y., Li, Y.
PDB entry 8y2f: Cryo-EM structure of human dopamine transporter in complex with GBR12909
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-01-25
Authors: Zhao, Y., Li, Y.
PDB entry 8y2g: Cryo-EM structure of human dopamine transporter in complex with methylphenidate
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-01-25
Authors: Zhao, Y., Li, Y.
PDB entry 8y2h: GK tetramer of AtP5CS1 filament with adjacent hooks, reaction state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-26
Authors: Zhang, T., Guo, C.J., Liu, J.L.
PDB entry 8y2i: Ternary structure of dLesCas12e-sgRNA-dsDNA
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Lentisphaerota; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-01-26
Authors: Zhang, S., Lin, S., Liu, J.J.G.
PDB entry 8y2k: The crystal structure of QX006N-Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2024-01-26
Authors: Li, W., Feng, W.
PDB entry 8y2l: The Crystal Structure of Glucosyltransferase TcdB from Clostridioides difficile
Classification: TRANSFERASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 3.95 Å
Deposited: 2024-01-26
Authors: Fan, S., Wei, X., Lv, R., Wang, C., Tang, M., Jin, Y., Yang, Z.
PDB entry 8y2m: Cryo-EM structure of the FB1-bound Lac1-Lip1 complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-01-26
Authors: Xie, T., Zhang, Z., Fang, Q., Gong, X.
PDB entry 8y2n: Cryo-EM structure of the apo Lac1-Lip1 complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-01-26
Authors: Xie, T., Zhang, Z., Fang, Q., Gong, X.
PDB entry 8y2o: The Cryo-EM structure of human tRNA methyltransferase FTSJ1-THADA with substrate tRNA and S-adenosyl homocysteine (SAH)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2024-01-26
Authors: Ishiguro, K., Fujimura, A., Shirouzu, M.
PDB entry 8y2p: The cryo-EM structure of a-synuclein fibril in Tris buffer.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-27
Authors: Yao, Y.X., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 8y2q: The cryo-EM structure of spermine induced a-synuclein fibril in Tris buffer.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-27
Authors: Yao, Y.X., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 8y2r: NMR Solution Structure of the 2:1 Coptisine-ATF4-G4 Complex
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2024-01-27
Authors: Xiao, C.M., Li, Y.P., Liu, Y.S., Dong, R.F., He, X.Y., Lin, Q., Zang, X., Wang, K.B., Xia, Y.Z., Kong, L.Y.
PDB entry 8y2s: P-hydroxybenzoate hydroxylase complexed with 4-hydroxy-3-methylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-27
Authors: Hara, K., Hashimoto, H., Matsushita, T., Kishimoto, S., Watanabe, K.
PDB entry 8y2t: Crystal structure of 3C protease from coxsackievirus B3
Classification: VIRAL PROTEIN
Source organism: Coxsackievirus B3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-01-27
Authors: Jiang, H.H., Zou, X.F., Zhang, J., Li, J.
PDB entry 8y2u: Crystal structure of 3C protease from coxsackievirus B4
Classification: VIRAL PROTEIN
Source organism: Coxsackievirus B4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-01-27
Authors: Jiang, H.H., Lin, C., Zhang, J., Li, J.
PDB entry 8y2y: MPXV mRNA capping enzyme small subunit
Classification: TRANSFERASE
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-01-27
Authors: Chen, A.K., Li, J.X.
PDB entry 8y2z: MPXV mRNA cap N7 methyltransferase
Classification: TRANSFERASE
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.94 Å
Deposited: 2024-01-27
Authors: Chen, A.K., Li, J.X.