LiteFold/PDB huggingface dataset:
PDB entry 8unq: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class F)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unr: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class G)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uns: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class H)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unt: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class I)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unu: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class J)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unv: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class K)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unw: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class L)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unx: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class M)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uny: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class N)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unz: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class O)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uo0: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class P)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uo1: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class Q)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uo2: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class R)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uo3: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class S)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uo4: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class T)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uo5: Protein Phosphatase 2A B55 subunit in complex with IER5
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-10-19
Authors: Jones, D.T.D., Cao, R., Rawson, S.D., Blacklow, S.C.
PDB entry 8uo6: HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII)
Classification: RNA
Source organism: HIV whole-genome vector AA1305#18
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-10-19
Authors: Tipo, J., Gottipati, K., Choi, K.
PDB entry 8uo7: Bovine trypsin in complex with deacetylated wild type microviridin J
Classification: HYDROLASE
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-10-19
Authors: Chen, W., Bruner, S.D.
PDB entry 8uo8: Structure of synaptic vesicle protein 2B with padsevonil
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-19
Authors: Martin, M.F., Mittal, A., Levin, E., Adams, C., Yang, M., Ledecq, M., Horanyi, P.S., Coleman, J.A.
PDB entry 8uo9: Structure of synaptic vesicle protein 2A in complex with a nanobody
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-19
Authors: Mittal, A., Martin, M.F., Levin, E., Adams, C., Yang, M., Ledecq, M., Horanyi, P.S., Coleman, J.A.
PDB entry 8uoa: Structure of the synaptic vesicle protein 2A Luminal domain in complex with a nanobody
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-19
Authors: Mittal, A., Martin, M.F., Levin, E., Adams, C., Yang, M., Ledecq, M., Horanyi, P.S., Coleman, J.A.
PDB entry 8uob: SARS-CoV-2 Papain-like protease (PLpro) with Inhibitor Jun12682
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2023-10-19
Authors: Ansari, A., Tan, B., Ruiz, F.X., Wang, J., Arnold, E.
PDB entry 8uoh: Crystal structure of human NUAK1-MARK3 kinase domain chimera bound with small molecule inhibitor #10
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-10-19
Authors: Delker, S.L., Abendroth, J.
PDB entry 8uoi: Crystal structure of human NUAK1-MARK3 kinase domain chimera bound with small molecule inhibitor #65
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-10-19
Authors: Delker, S.L., Abendroth, J.
PDB entry 8uoj: Crystal structure of human NUAK1-MARK3 kinase domain chimera bound with azepane (R)-#50 small molecule inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-19
Authors: Delker, S.L., Abendroth, J., Mayclin, S.J.
PDB entry 8uok: Crystal structure of human NUAK1-MARK3 (7 mutations) kinase domain chimera bound with small molecule inhibitor #31
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-10-19
Authors: Delker, S.L., Abendroth, J., Fox III, D.D.
PDB entry 8uol: Crystal structure of human NUAK1-MARK3 (6 mutations) kinase domain chimera bound with small molecule inhibitor #31
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-19
Authors: Delker, S.L., Abendroth, J.
PDB entry 8uom: LSD1-CoREST with N-formyl-FAD in complex with H3dimeK4 histone tail
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-10-20
Authors: Caroli, J., Mattevi, A.
PDB entry 8uoo: Structure of atypical asparaginase from Rhodospirillum rubrum
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-10-20
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8uop: Major interface of Streptococcal surface enolase dimer from AP53 group A streptococcus bound to a lipid vesicle
Classification: LYASE
Source organism: Streptococcus pyogenes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-20
Authors: Tjia-Fleck, S., Readnour, B.M., Castellino, F.J.
PDB entry 8uoq: Composite map of PIC_delta_TFIIK form2
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-20
Authors: Yang, C., Murakami, K.
PDB entry 8uor: Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19E)
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-10-20
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8uos: Designed IL-1R antagonist IL-1Rmb80
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-10-20
Authors: Jude, K.M., Garcia, K.C.
PDB entry 8uot: Composite map of PICdeltaTFIIK form1
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-20
Authors: Yang, C., Murakami, K.
PDB entry 8uou: Structure of atypical asparaginase from Rhodospirillum rubrum in complex with L-Asp
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-10-20
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8uow: Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21A)
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-20
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8uox: Cryo-EM structure of a Counterclockwise locked form of the Salmonella enterica Typhimurium flagellar C-ring, with C34 symmetry applied
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2023-10-20
Authors: Johnson, S., Deme, J.C., Lea, S.M.
PDB entry 8uoy: Major interface of Streptococcal surface enolase dimer from AP53 group A streptococcus bound to a lipid vesicle
Classification: LYASE
Source organism: Streptococcus pyogenes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-20
Authors: Tjia-Fleck, S., Readnour, B.M., Castellino, F.J.
PDB entry 8uoz: EmrE structure in the TPP-bound state (WT/E14Q heterodimer)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: SOLUTION NMR, SOLID-STATE NMR
Deposited: 2023-10-20
Authors: Li, J., Sae Her, A., Besch, A., Ramirez, B., Crames, M., Banigan, J.R., Mueller, C., Marsiglia, W.M., Zhang, Y., Traaseth, N.J.
PDB entry 8up1: CryoEM Structure of Allosterically Switchable De Novo Protein sr322, In Closed State without Effector Peptide
Classification: DE NOVO PROTEIN
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.55 Å
Deposited: 2023-10-20
Authors: Weidle, C., Borst, A.
PDB entry 8up2: Murine Fab JAR 4 bound to meningococcal Factor H binding protein
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-20
Authors: Beernink, P.T., Beernink, B.P.
PDB entry 8up3: Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21F)
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-10-20
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8up4: Crystal structure of Lsd18 (a flavin-dependent monooxygenase)
Classification: FLAVOPROTEIN
Source organism: Streptomyces lasalocidi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-10-20
Authors: Wang, Q., Chen, X., Kim, C.Y.
PDB entry 8up5: Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1) bound to tRNA in its native-like conformation.
Classification: RNA BINDING PROTEIN/RNA
Source organism: Methanocaldococcus jannaschii; Pyrococcus furiosus DSM 3638
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2023-10-21
Authors: Ona Chuquimarca, S.M., Beenstock, J., Daou, S., Keszei, A.F.A., Yin, Z., Sicheri, F.
PDB entry 8up6: Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19A) in complex with L-Asp
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-21
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8up7: Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19A)
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-21
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8up8: Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21F, complex with L-Asp)
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-21
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8up9: Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19Q)
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-10-21
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8upa: Structure of gp130 in complex with a de novo designed IL-6 mimetic
Classification: CYTOKINE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-10-22
Authors: Borowska, M.T., Jude, K.M., Garcia, K.C.
PDB entry 8upb: De novo designed IL-6 mimetic
Classification: CYTOKINE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-10-22
Authors: Borowska, M.T., Jude, K.M., Garcia, K.C.
PDB entry 8upc: Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K158M)
Classification: HYDROLASE
Source organism: Rhodospirillum rubrum ATCC 11170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-10-22
Authors: Lubkowski, J., Wlodawer, A., Zhang, D.
PDB entry 8upf: Cryo-EM structure of the human nucleosome core particle in complex with RNF168-UbcH5c
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-22
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8uph: Pr state of Stigmatella aurantiaca bacteriophytochrome 2
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2023-10-22
Authors: Malla, T.N., Schmidt, M., Stojkovic, E.A.
PDB entry 8upi: Structure of a periplasmic peptide binding protein from Mesorhizobium sp. AP09 bound to aminoserine
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mesorhizobium sp. AP09
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-10-22
Authors: Frkic, R.L., Smith, O.B., Rahman, M., Kaczmarski, J.A., Jackson, C.J.
PDB entry 8upk: Pr/Pfr heterodimer (hybrid) state of Stigmatella aurantiaca bacteriophytochrome 2
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-10-22
Authors: Malla, T.N., Schmidt, M., Stojkovic, E.A.
PDB entry 8upl: Cryo-EM structure of a Clockwise locked form of the Salmonella enterica Typhimurium flagellar C-ring, with C34 symmetry applied
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.4 Å
Deposited: 2023-10-22
Authors: Johnson, S., Deme, J.C., Lea, S.M.
PDB entry 8upm: Pfr state of Stigmatella aurantiaca bacteriophytochrome 2
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-10-23
Authors: Malla, T.N., Schmidt, M., Stojkovic, E.A.
PDB entry 8upn: Campylobacter jejuni ketol-acid reductoisomerase in complex with NADP+ and HMKB
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-10-23
Authors: Lin, X., Lonhienne, T., Guddat, L.W.
PDB entry 8upo: Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2023-10-23
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8upp: Campylobacter jejuni ketol-acid reductoisomerase in complex with NADPH and Hoe704
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-10-23
Authors: Lin, X., Lv, Y., Lonhienne, T., Guddat, L.W.
PDB entry 8upq: Campylobacter jejuni ketol-acid reductoisomerase in complex with 2,3-dihydroxy-3-isovalerate.
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-10-23
Authors: Lin, X., Lonhienne, T., Guddat, L.W.
PDB entry 8upr: Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-10-23
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8ups: Structure of SARS-Cov2 3CLPro in complex with Compound 5
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-10-23
Authors: Wu, Y., Qiang, D., Zhuang, N., Krishnamurthy, H., Klein, D.J.
PDB entry 8upt: Candidatus Methanomethylophilus alvus tRNAPyl in A-site of ribosome
Classification: RNA
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-10-23
Authors: Krahn, N., Zhang, J., Melnikov, S.V., Tharp, J.M., Villa, A., Patel, A., Howard, R.J., Gabir, H., Patel, T.R., Stetefeld, J., Puglisi, J., Soll, D.
PDB entry 8upv: Structure of SARS-Cov2 3CLPro in complex with Compound 33
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-10-23
Authors: Krishnamurthy, H., Zhuang, N., Qiang, D., Wu, Y., Klein, D.J.
PDB entry 8upw: Structure of SARS-Cov2 3CLPro in complex with Compound 34
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2023-10-23
Authors: Krishnamurthy, H., Zhuang, N., Qiang, D., Wu, Y., Klein, D.J.
PDB entry 8upx: Omicron-S-MERS-RBD
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-23
Authors: Bu, F., Li, F., Liu, B.
PDB entry 8upy: Methanosarcine mazei tRNAPyl in A-site of ribosome
Classification: RNA
Source organism: Methanosarcina mazei
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-10-23
Authors: Krahn, N., Zhang, J., Melnikov, S.V., Tharp, J.M., Villa, A., Patel, A., Howard, R.J., Gabir, H., Patel, T.R., Stetefeld, J., Puglisi, J., Soll, D.
PDB entry 8upz: Minimal PutA proline dehydrogenase domain (design #2) complexed with (Prop-2-ynylthio)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2023-10-23
Authors: Tanner, J.J.
PDB entry 8uq0: Minimal PutA proline dehydrogenase domain (design #2) complexed with 2-(Cyanomethylthio)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-10-23
Authors: Tanner, J.J.
PDB entry 8uq1: Minimal PutA proline dehydrogenase domain (design #2) complexed with (Allylthio)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-10-23
Authors: Tanner, J.J.
PDB entry 8uq2: Structure of human RyR2-S2808D in the subprimed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-10-23
Authors: Miotto, M.C., Marks, A.R.
PDB entry 8uq3: Structure of human RyR2-S2808D in the closed state in the presence of ARM210
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-10-23
Authors: Miotto, M.C., Marks, A.R.
PDB entry 8uq4: Structure of human RyR2-S2808D in the subprimed state in the presence of H2O2/NOC-12/GSH
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2023-10-23
Authors: Miotto, M.C., Marks, A.R.
PDB entry 8uq5: Structure of human RyR2-S2808D in the primed state in the presence of Rapamycin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2023-10-23
Authors: Miotto, M.C., Marks, A.R.
PDB entry 8uq6: Human Plasminogen bound to streptococcal surface enolase
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-23
Authors: Tjia-Fleck, S., Readnour, B.M., Castellino, F.J.
PDB entry 8uq7: Alzheimer's disease PHF complexed with PET ligand MK-6240
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2023-10-23
Authors: Kunach, P., Shahmoradian, S.H., Diamond, M.I., Rosa-Neto, P.
PDB entry 8uq8: Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 2-residue linker
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-10-23
Authors: Hu, Q., Botuyan, M.V., Mer, G.
PDB entry 8uq9: Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 4-residue linker
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-23
Authors: Hu, Q., Botuyan, M.V., Mer, G.
PDB entry 8uqa: Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 12-residue linker
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.049 Å
Deposited: 2023-10-23
Authors: Hu, Q., Botuyan, M.V., Mer, G.
PDB entry 8uqb: Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (crystallization condition 1)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.484 Å
Deposited: 2023-10-23
Authors: Hu, Q., Botuyan, M.V., Mer, G.
PDB entry 8uqc: Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (crystallization condition 2)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-10-23
Authors: Hu, Q., Botuyan, M.V., Mer, G.
PDB entry 8uqd: Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (condition 2. RING not modeled in density)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.893 Å
Deposited: 2023-10-23
Authors: Hu, Q., Botuyan, M.V., Mer, G.
PDB entry 8uqe: Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 26-residue linker (RING not modeled in density)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.562 Å
Deposited: 2023-10-23
Authors: Hu, Q., Botuyan, M.V., Mer, G.
PDB entry 8uqf: Crystal structure of designed cortisol-binding protein hcy129_mpnn5
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-10-23
Authors: Pellock, S.J., Bera, A.
PDB entry 8uqh: X-ray crystal structure of PRMT4 bound to compound YD-1130
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-10-23
Authors: Bush, M., Noinaj, N., Deng, Y., Huang, R.
PDB entry 8uqi: Pr/Pfr heterodimeric state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-10-23
Authors: Malla, T.N., Schmidt, M., Stojkovic, E.A.
PDB entry 8uqk: Pfr state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.61 Å
Deposited: 2023-10-23
Authors: Malla, T.N., Schmidt, M., Stojkovic, E.A.
PDB entry 8uql: Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-24
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8uqm: Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-10-24
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8uqn: PLCb3-Gaq complex on membranes
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-24
Authors: Falzone, M.E., MacKinnon, R.
PDB entry 8uqo: PLCb3-Gbg-Gaq complex on membranes
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-10-24
Authors: Falzone, M.E., MacKinnon, R.
PDB entry 8uqp: Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-24
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8uqq: Structure of mCLIFY: a circularly permuted yellow fluorescent protein
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-10-24
Authors: Shweta, H., Gupta, K., Zhou, Y., Cui, X., Li, S., Lu, Z., Goldman, Y.E., Dantzig, J.
PDB entry 8uqr: Crystal structure of the human p53 tetramerization domain
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2023-10-24
Authors: Wahba, H.M., Sakaguchi, S., Nakagawa, N., Wada, J., Kamada, R., Sakaguchi, K., Omichinski, J.G.
PDB entry 8uqs: Crystal structure of the Opossum p53 tetramerization domain
Classification: TRANSCRIPTION
Source organism: Monodelphis domestica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-10-24
Authors: Wahba, H.M., Sakaguchi, S., Nakagawa, N., Wada, J., Kamada, R., Sakaguchi, K., Omichinski, J.G.
PDB entry 8uqt: Crystal structure of the Tree Shrew p53 tetramerization domain
Classification: TRANSCRIPTION
Source organism: Tupaia chinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2023-10-24
Authors: Wahba, H.M., Sakaguchi, S., Nakagawa, N., Wada, J., Kamada, R., Sakaguchi, K., Omichinski, J.G.
PDB entry 8uqu: Crystal Structure of N-terminal Domain of Fic Family Protein from Bordetella bronchiseptica
Classification: TRANSFERASE
Source organism: Bordetella bronchiseptica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-10-24
Authors: Minasov, G., Shuvalova, L., Brunzelle, J.S., Kiryukhina, O., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8uqv: Trehalose Synthase (TreS) of Mycobacterium tuberculosis in complex with 6-TreAz compound
Classification: CYTOSOLIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-24
Authors: Pathirage, R., Ronning, D.R.
PDB entry 8uqw: Round 18 Arylesterase Variant of Apo-Phosphotriesterase Measured at 13 keV
Classification: HYDROLASE
Source organism: Brevundimonas diminuta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-10-25
Authors: Breeze, C.W., Frkic, R.L., Campbell, E.C., Jackson, C.J.
PDB entry 8uqx: Round 18 Arylesterase Variant of Apo-Phosphotriesterase Measured at 9.5 keV
Classification: HYDROLASE
Source organism: Brevundimonas diminuta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-10-25
Authors: Breeze, C.W., Frkic, R.L., Campbell, E.C., Jackson, C.J.
PDB entry 8uqy: Round 18 Arylesterase Variant of Phosphotriesterase Bound to Europium(III) Measured at 9.5 keV
Classification: HYDROLASE
Source organism: Brevundimonas diminuta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-10-25
Authors: Breeze, C.W., Frkic, R.L., Campbell, E.C., Jackson, C.J.
PDB entry 8uqz: Round 18 Arylesterase Variant of Phosphotriesterase Bound to Gadolinium(III) Measured at 9.5 keV
Classification: HYDROLASE
Source organism: Brevundimonas diminuta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-10-25
Authors: Breeze, C.W., Frkic, R.L., Campbell, E.C., Jackson, C.J.
PDB entry 8ur0: Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-25
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8ur1: Crystal structure N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate bound halide free active site)
Classification: LIPID TRANSPORT
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-10-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8ur2: Crystal Structure of macrophage migration inhibitory factor (MIF) from Trichomonas vaginalis (I41 form)
Classification: CYTOKINE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8ur3: Cryo-EM reconstruction of Staphylococcus aureus Oleate hydratase (OhyA) dimer with an ordered C-terminal membrane-association domain
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2023-10-25
Authors: Oldham, M.L., Qayyum, M.Z.
PDB entry 8ur4: Crystal Structure of macrophage migration inhibitory factor (MIF) from Trichomonas vaginalis (I4122 form)
Classification: CYTOKINE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-10-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8ur5: I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5 (local refinement of TH-1heptad)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-25
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8ur6: Cryo-EM reconstruction of Staphylococcus aureus oleate hydratase (OhyA) dimer with a disordered C-terminal membrane-association domain
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-10-25
Authors: Oldham, M.L., Qayyum, M.Z.
PDB entry 8ur7: I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-6heptad-I53_dn5 (local refinement of TH-6heptad)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-10-25
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8ur8: Cryo-EM reconstruction of Staphylococcus aureus oleate hydratase (OhyA) dimer of dimers
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-10-25
Authors: Oldham, M.L., Qayyum, M.Z.
PDB entry 8ur9: Crystal Structure of the SARS-CoV-2 Main Protease in Complex with Compound 61
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-25
Authors: Papini, C., Zhang, C.H., Jorgensen, W.L., Anderson, K.S.
PDB entry 8ura: Crystal structure of Corynebacterium ulcerans endo-beta-N-acetylglucosaminidase catalytically inactive CU43 D187A-E189A at 2.6 A resolution (space group P21)
Classification: HYDROLASE
Source organism: Corynebacterium ulcerans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-10-25
Authors: Sastre, D.E., Sultana, N., Sundberg, E.J.
PDB entry 8urb: Porcine epidemic diarrhea virus complete core polymerase complex
Classification: REPLICATION, TRANSFERASE/RNA
Source organism: Porcine epidemic diarrhea virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-25
Authors: Anderson, T.K., Kirchdoerfer, R.N.
PDB entry 8urc: Bacillus niacini flavin monooxygenase
Classification: CYTOSOLIC PROTEIN
Source organism: Neobacillus niacini
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-10-25
Authors: Richardson, B.C., French, J.B.
PDB entry 8urd: Bacillus niacini flavin monooxygenase with bound (2,6)DHP
Classification: CYTOSOLIC PROTEIN
Source organism: Neobacillus niacini
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-10-25
Authors: Richardson, B.C., French, J.B.
PDB entry 8ure: CryoEM Structure of Allosterically Switchable De Novo Protein sr312, in Open State with Effector Peptide
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-10-25
Authors: Weidle, C., Skotheim, R.
PDB entry 8urf: Crystal Structure of human ASGR2 CRD (Carbohydrate Recognition Domain) bound to 8G8 Fab
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-25
Authors: Sampathumar, P., Li, Y.
PDB entry 8urg: Human mitochondrial calcium uniporter crystal structure (residues 74-165 resolved) with lithium
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-10-25
Authors: Grainger, R., Colussi, D.C., Noble, M., Junop, M., Stathopulos, P.B.
PDB entry 8urh: Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2023-10-26
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8uri: Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-10-26
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8urj: Cryo-EM structure of the HIV-1 nuclear export complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.25 Å
Deposited: 2023-10-26
Authors: Smith, A.M., Cheng, Y., Frankel, A.D.
PDB entry 8urk: Crystal structure of DNA N6-Adenine Methyltransferase M.BceJIV from Burkholderia cenocepacia in complex with duplex DNA substrates
Classification: DNA BINDING PROTEIN
Source organism: Burkholderia cenocepacia; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-10-26
Authors: Kottur, J., Quintana-Feliciano, R., Aggarwal, A.K.
PDB entry 8url: The Apo NanJ structure from Clostridium perfringens
Classification: HYDROLASE
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-10-26
Authors: Medley, B.J., Boraston, A.B.
PDB entry 8urm: E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-26
Authors: Kimbrough, E.M., Dunham, C.M., Nguyen, H.A.
PDB entry 8urn: Crystal structure of EscI(51-87)-linker-EtgA(18-152) fusion protein
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-10-26
Authors: van den Akker, F.
PDB entry 8uro: Crystal structure of IgG1-Fc fragment (E382S) in complex with Corynebacterial ENGase CU43 (D187A-E189A)
Classification: IMMUNE SYSTEM
Source organism: Corynebacterium ulcerans; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2023-10-26
Authors: Sastre, D.E., Sultana, N., Sundberg, E.J.
PDB entry 8urp: Cholinephosphotransferase in complex with CDP-choline and phosphatidylcholine
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-10-26
Authors: Roberts, J.R., Maeda, S., Ohi, M.D.
PDB entry 8urq: Spo11 core complex with gapped DNA
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-26
Authors: Yu, Y., Patel, D.J.
PDB entry 8urt: Cholinephosphotransferase in complex with selective inhibitor chelerythrine
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-26
Authors: Roberts, J.R., Maeda, S., Ohi, M.D.
PDB entry 8uru: Spo11 core complex with hairpin DNA
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-26
Authors: Yu, Y., Patel, D.J.
PDB entry 8urv: Solution NMR structure of pro-IL-18
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-10-26
Authors: Bonin, J.P., Aramini, J.M., Kay, L.E.
PDB entry 8urw: Cyanobacterial RNA polymerase elongation complex with NusG and CTP
Classification: TRANSCRIPTION
Source organism: Synechococcus elongatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-10-26
Authors: Qayyum, M.Z., Imashimizu, M., Leanca, M., Vishwakarma, R.K., Bradley Riaz, A., Yuzenkova, Y., Murakami, K.S.
PDB entry 8urx: Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Classification: TRANSCRIPTION
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2023-10-27
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8ury: Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
Classification: RIBOSOME
Source organism: Escherichia coli; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-27
Authors: Molodtsov, V., Wang, C., Ebright, R.H.
PDB entry 8us0: Human antibody S8V1-157 in complex with the A/American black duck/New Brunswick/00464/2010(H4N6) HA head domain
Classification: Viral Protein/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2023-10-27
Authors: McCarthy, K.R.
PDB entry 8us1: P21 Crystal structure of TamA from Pseudomonas aeruginosa at 2.6 Ang
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-10-27
Authors: Mellouk, A., Moraes, T.F., Calmettes, C.
PDB entry 8us2: P22121 Crystal structure of TamA from Pseudomonas aeruginosa at 3.95 Ang
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.955 Å
Deposited: 2023-10-27
Authors: Mellouk, A., Moraes, T.F., Calmettes, C.
PDB entry 8us3: C2 Crystal structure of TamA from Pseudomonas aeruginosa at 3.1 Ang
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-10-27
Authors: Mellouk, A., Moraes, T.F., Calmettes, C.
PDB entry 8us4: C2221 Crystal structure of TamA (Barrel only) from Pseudomonas aeruginosa at 3.15 Ang
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-10-27
Authors: Mellouk, A., Moraes, T.F., Calmettes, C.
PDB entry 8us8: Crystal structure of B1E11K malarial antibody in complex with RESA repeat peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2023-10-27
Authors: Yoo, R., Julien, J.P.
PDB entry 8usb: Non-substrate-engaged human 26S proteasome with Nub1/FAT10 bound to Rpn1
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-10-27
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 8usc: Nub1/Fat10-processing human 26S proteasome
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-27
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 8usd: Rpn1/Nub1UBL-focused alignment of the non-substrate-engaged human 26S proteasome
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-27
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 8use: Crystal Structure of Kemp Eliminase HG649 in unbound state, 280 K
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-10-27
Authors: Seifinoferest, B.
PDB entry 8usf: Crystal Structure of Kemp Eliminase HG649 with bound transition state analogue, 280 K
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-10-27
Authors: Seifinoferest, B.
PDB entry 8usg: Crystal Structure of Kemp Eliminase HG630 in unbound state, 280 K
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-10-27
Authors: Seifinoferest, B.
PDB entry 8ush: Crystal Structure of Kemp Eliminase HG630 with bound transition state analogue, 280 K
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-10-27
Authors: Seifinoferest, B.
PDB entry 8usi: Crystal Structure of Kemp Eliminase HG198 in unbound state, 280 K
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-27
Authors: Seifinoferest, B.
PDB entry 8usj: Crystal Structure of Kemp Eliminase HG198 with bound transition state analogue, 280 K
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-27
Authors: Seifinoferest, B.
PDB entry 8usk: Crystal Structure of Kemp Eliminase HG185 in unbound state, 280 K
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-27
Authors: Seifinoferest, B.
PDB entry 8usl: Crystal Structure of Kemp Eliminase HG185 with bound transition state analogue, 280 K
Classification: HYDROLASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-10-27
Authors: Seifinoferest, B.
PDB entry 8usm: FmlH Lectin Domain UTI89 - AM4085
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-10-27
Authors: Tamadonfar, K.O., Pinkner, J.P., Maddirala, A.R., Janetka, J.W., Hultgren, S.J.
PDB entry 8usn: Intracellular cryo-tomography structure of EBOV nucleocapsid at 8.9 Angstrom
Classification: VIRAL PROTEIN
Source organism: Ebola virus - Mayinga, Zaire, 1976; Zaire
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.9 Å
Deposited: 2023-10-27
Authors: Watanabe, R., Zyla, D., Saphire, E.O.
PDB entry 8uso: Full-length human CaMKII delta holoenzyme
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-28
Authors: Ozden, C., Abromson, N.L., Tomchick, D.R., Stratton, M.M., Garman, S.C.