LiteFold/PDB huggingface dataset:
PDB entry 7ye4: BAM-EspP complex structure with BamA-G431C and G781C/EspP-N1293C and A1043C mutations in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12; Escherichia coli O157:H7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-05
Authors: Shen, C., Chang, S., Luo, Q., Zhang, Z., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhang, X., Tang, X., Dong, H.
PDB entry 7ye5: SARS-CoV-2 Spike (6P) in complex with 2 R1-32 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.75 Å
Deposited: 2022-07-05
Authors: Liu, B., Gao, X., Li, Z., Chen, X., He, J., Chen, L., Xiong, X.
PDB entry 7ye6: BAM-EspP complex structure with BamA-N427C/EspP-R1297C mutations in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12; Escherichia coli O157:H7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-05
Authors: Shen, C., Chang, S., Luo, Q., Zhang, Z., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhang, X., Tang, X., Dong, H.
PDB entry 7ye7: Crystal structure of SARS-CoV-2 soluble dimeric ORF9b
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2022-07-05
Authors: Jin, X., Chai, Y., Qi, J., Song, H., Gao, G.F.
PDB entry 7ye8: Crystal structure of SARS-CoV-2 refolded dimeric ORF9b
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2022-07-05
Authors: Jin, X., Chai, Y., Qi, J., Song, H., Gao, G.F.
PDB entry 7ye9: SARS-CoV-2 Spike (6P) in complex with 3 R1-32 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.17 Å
Deposited: 2022-07-05
Authors: Liu, B., Gao, X., Li, Z., Chen, X., He, J., Chen, L., Xiong, X.
PDB entry 7yea: Human O-GlcNAc transferase Dimer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2022-07-05
Authors: Gao, H., Lu, P., Liu, Y.
PDB entry 7yeb: TR-SFX MmCPDII-DNA complex: 3.35 ns snapshot. Includes 3.35 ns, dark, and extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-05
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7yec: TR-SFX MmCPDII-DNA complex: 6 ns snapshot. Includes 6 ns, dark, and extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-05
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7yed: In situ structure of polymerase complex of mammalian reovirus in the elongation state
Classification: VIRAL PROTEIN/RNA
Source organism: Mammalian orthoreovirus 3; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-05
Authors: Bao, K.Y., Zhang, X.L., Li, D.Y., Zhu, P.
PDB entry 7yee: TR-SFX MmCPDII-DNA complex: 10 ns snapshot. Includes 10 ns, dark, and extrapolated structure factors. Collected at SwissFEL
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-07-05
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7yeg: SARS-CoV-2 Spike (6P) in complex with 3 R1-32 Fabs and 3 ACE2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2022-07-05
Authors: Liu, B., Gao, X., Li, Z., Chen, X., He, J., Chen, L., Xiong, X.
PDB entry 7yeh: Cryo-EM structure of human OGT-OGA complex
Classification: TRANSFERASE/HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2022-07-05
Authors: Lu, P., Liu, Y., Yu, H., Gao, H.
PDB entry 7yei: TR-SFX MmCPDII-DNA complex: 10 ns time-point collected in SACLA. Includes 10 ns, dark, and extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-07-05
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7yej: TR-SFX MmCPDII-DNA complex: 100 ns time-point collected in SACLA. Includes 100 ns, dark, and extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2022-07-05
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7yek: TR-SFX MmCPDII-DNA complex: 500 ns time-point collected in SACLA. Includes 500 ns, dark, and extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-07-06
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7yel: TR-SFX MmCPDII-DNA complex: 25 us time-point collected in SACLA. Includes 25 us, dark, and extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-06
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7yem: TR-SFX MmCPDII-DNA complex: 200 us time-point collected in SACLA. Includes 200 us, dark, and extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-07-06
Authors: Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7yen: Crystal structure of the Keap1 Kelch domain in complex with Caffeic acid
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-06
Authors: Wang, C., Jiang, L.
PDB entry 7yeo: Crystal Structure of cystathionine gamma-synthase-like protein C23A1.14c
Classification: HYDROLASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-06
Authors: Zhang, S.J.
PDB entry 7yep: 2-APB bound state of mTRPV2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2022-07-06
Authors: Su, N.
PDB entry 7yeq: Structural insight into African Swine Fever Virus CP312R protein reveals it as a single-stranded DNA binding protein
Classification: VIRUS
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2022-07-06
Authors: Chen, L.F., Wu, Y.K.
PDB entry 7yer: The structure of EBOV L-VP35 complex
Classification: VIRAL PROTEIN
Source organism: Ebola virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-06
Authors: Shi, Y., Yuan, B., Peng, Q.
PDB entry 7yes: The structure of EBOV L-VP35-RNA complex (state2)
Classification: VIRAL PROTEIN
Source organism: Ebola virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-06
Authors: Shi, Y., Yuan, B., Peng, Q.
PDB entry 7yet: The structure of EBOV L-VP35 in complex with suramin
Classification: VIRAL PROTEIN
Source organism: Ebola virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-06
Authors: Shi, Y., Yuan, B., Peng, Q.
PDB entry 7yeu: Superfolder green fluorescent protein with phosphine unnatural amino acid P3BF
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-07-06
Authors: Hu, C., Duan, H.Z., Liu, X.H., Chen, Y.X., Wang, J.Y.
PDB entry 7yev: In situ structure of polymerase complex of mammalian reovirus in the pre-elongation state
Classification: VIRAL PROTEIN
Source organism: Mammalian orthoreovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-06
Authors: Bao, K.Y., Zhang, X.L., Li, D.Y., Zhu, P.
PDB entry 7yew: Structure of MmIGF2BP3 in complex with 7-mer RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-06
Authors: Li, X.J., Wu, B.X.
PDB entry 7yex: Structure of MmIGF2BP3 in complex with 8-mer RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-06
Authors: Li, X.J., Wu, B.X.
PDB entry 7yey: Structure of MmIGF2BP3-KH12 in complex with 8-mer RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-07-06
Authors: Li, X.J., Wu, B.X.
PDB entry 7yez: In situ structure of polymerase complex of mammalian reovirus in the reloaded state
Classification: VIRAL PROTEIN
Source organism: Mammalian orthoreovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-06
Authors: Bao, K.Y., Zhang, X.L., Li, D.Y., Zhu, P.
PDB entry 7yf0: In situ structure of polymerase complex of mammalian reovirus in the core
Classification: VIRAL PROTEIN
Source organism: Mammalian orthoreovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-07
Authors: Bao, K.Y., Zhang, X.L., Li, D.Y., Zhu, P.
PDB entry 7yf1: Structure of FABP at 1.7 Angstroms resolution.
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-07
Authors: Liu, Y.h., Wang, L.l.
PDB entry 7yf2: Crystal structure of METTL9 in complex with unmethylated SLC39A5 peptide and SAH
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.691 Å
Deposited: 2022-07-07
Authors: Xie, H., Wang, X., Xu, C.
PDB entry 7yf3: Crystal structure of METTL9 in complex with unmethylated S100A9 peptide and SAH
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.434 Å
Deposited: 2022-07-07
Authors: Xie, H., Wang, X., Xu, C.
PDB entry 7yf4: Crystal structure of METTL9 in complex with SLC39A5 mutant peptide and SAH
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2022-07-07
Authors: Xie, H., Wang, X., Xu, C.
PDB entry 7yf5: Crystal Structure of the UDPGA Binding Domain of the Human Phase II Metabolizing Enzyme UDP-Glucuronosyltransferase 2B10
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.527 Å
Deposited: 2022-07-07
Authors: Yin, X.L., Tong, J.S.
PDB entry 7yf6: Crystal structure of HIV-1 protease in complex with macrocyclic peptide
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2022-07-07
Authors: Kusumoto, Y., Sato, S., Yamada, T., Kozono, I., Nakata, Z., Asada, N., Mitsuki, S., Wakasa-Morimoto, C., Tohru, M., Watanabe, A., Hayashi, K., Mikamiyama, H.
PDB entry 7yf7: NMR solution structures of the DNA minidumbbell formed by two ATTTT repeats
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-07-07
Authors: Wan, L., Li, J., Guo, P.
PDB entry 7yfc: Cryo-EM structure of the histamine-bound histamine H4 receptor and Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-08
Authors: Im, D., Iwata, S., Asada, H.
PDB entry 7yfd: Cryo-EM structure of the imetit-bound histamine H4 receptor and Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-08
Authors: Im, D., Iwata, S., Asada, H.
PDB entry 7yfe: In situ structure of polymerase complex of mammalian reovirus in virion
Classification: VIRAL PROTEIN/RNA
Source organism: Mammalian orthoreovirus 3; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-08
Authors: Bao, K.Y., Zhang, X.L., Li, D.Y., Zhu, P.
PDB entry 7yff: Structure of GluN1a-GluN2D NMDA receptor in complex with agonist glycine and competitive antagonist CPP.
Classification: ELECTRON TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-08
Authors: Zhang, J.L., Zhu, S.J., Zhang, M.
PDB entry 7yfg: Structure of the Rat GluN1-GluN2C NMDA receptor in complex with glycine and glutamate (major class in asymmetry)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-08
Authors: Zhang, M., Zhang, J., Guo, F., Li, Y., Zhu, S.
PDB entry 7yfh: Structure of the Rat GluN1-GluN2C NMDA receptor in complex with glycine, glutamate and (R)-PYD-106
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-08
Authors: Zhang, M., Zhang, J., Guo, F., Li, Y., Zhu, S.
PDB entry 7yfi: Structure of the Rat tri-heteromeric GluN1-GluN2A-GluN2C NMDA receptor in complex with glycine and glutamate
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-08
Authors: Zhang, M., Zhang, J., Guo, F., Li, Y., Zhu, S.
PDB entry 7yfj: Crystal structure of human WTAP
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-07-08
Authors: Yan, X.H., Guan, Z.Y., Tang, C., Yin, P.
PDB entry 7yfk: The structure of human pregnane X receptor in complex with an SRC-1 coactivator peptide and a limonoid compound, nomilin
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-08
Authors: Xia, Y., Yao, D., Huang, C., Cao, Y.
PDB entry 7yfl: Structure of GluN1a-GluN2D NMDA receptor in complex with agonists glycine and glutamate.
Classification: ELECTRON TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-07-08
Authors: Zhang, J.L., Zhu, S.J., Zhang, M.
PDB entry 7yfm: Structure of GluN1b-GluN2D NMDA receptor in complex with agonists glycine and glutamate.
Classification: ELECTRON TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2022-07-08
Authors: Zhang, J.L., Zhu, S.J., Zhang, M.
PDB entry 7yfn: Core module of the NuA4 complex in S. cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-07-08
Authors: Ji, L.T., Zhao, L.X., Xu, K., Gao, H.H., Zhou, Y., Kornberg, R.D., Zhang, H.Q.
PDB entry 7yfo: Structure of GluN1a E698C-GluN2D NMDA receptor in cystines crosslinked state.
Classification: ELECTRON TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2022-07-08
Authors: Zhang, J.L., Zhu, S.J., Zhang, M.
PDB entry 7yfp: The NuA4 histone acetyltransferase complex from S. cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-07-08
Authors: Ji, L.T., Zhao, L.X., Xu, K., Gao, H.H., Zhou, Y., Kornberg, R.D., Zhang, H.Q.
PDB entry 7yfq: Cryo-EM structure of the EfPiwi (N959K)-piRNA-target ternary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ephydatia fluviatilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-08
Authors: Li, Z.Q., Liu, H.B., Wu, J.P., Shen, E.Z.
PDB entry 7yfr: Structure of GluN1a E698C-GluN2D NMDA receptor in cystines non-crosslinked state.
Classification: ELECTRON TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2022-07-09
Authors: Zhang, J.L., Zhu, S.J., Zhang, M.
PDB entry 7yfs: The NMR structure of noursin, a tricyclic ribosomal peptide containing a histidine-to-butyrine crosslink
Classification: UNKNOWN FUNCTION
Source organism: Streptomyces noursei ATCC 11455
Experimental method: SOLUTION NMR
Deposited: 2022-07-09
Authors: Yao, H., Li, Y., Zhang, T., Gao, J., Wang, H.
PDB entry 7yft: Crystal structure of the P450 BM3 heme domain mutant F87A/T268V/A82C/L181M in complex with N-imidazolyl-pentanoyl-L-phenylalanine, indane and hydroxylamine
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-09
Authors: Dong, S., Chen, J., Jiang, Y., Cong, Z., Feng, Y.
PDB entry 7yfu: Structure of Rpgrip1l CC2
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-09
Authors: He, R., Chen, G., Li, Z., Li, J.
PDB entry 7yfv: Structure of Rpgrip1l CC1
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-09
Authors: He, R., Chen, G., Li, Z., Li, J.
PDB entry 7yfw: Cyanophage Pam3 fiber
Classification: VIRAL PROTEIN
Source organism: uncultured cyanophage
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2022-07-09
Authors: Yang, F., Jiang, Y.L., Zhou, C.Z.
PDB entry 7yfx: Cryo-EM structure of Hili in complex with piRNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-09
Authors: Li, Z.Q., Liu, H.B., Wu, J.P., Shen, E.Z.
PDB entry 7yfy: Cryo-EM structure of the Mili-piRNA- target ternary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-09
Authors: Li, Z.Q., Liu, H.B., Wu, J.P., Shen, E.Z.
PDB entry 7yfz: Cyanophage Pam3 baseplate proteins
Classification: VIRAL PROTEIN
Source organism: uncultured cyanophage
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2022-07-09
Authors: Yang, F., Jiang, Y.L., Zhou, C.Z.
PDB entry 7yg0: Cryo-EM structure of human sodium-chloride cotransporter
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2022-07-09
Authors: Nan, J., Yang, X.M., Shan, Z.Y., Yuan, Y.F., Zhang, Y.Q.
PDB entry 7yg1: Cryo-EM structure of the C-terminal domain of the human sodium-chloride cotransporter
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2022-07-09
Authors: Nan, J., Yang, X.M., Shan, Z.Y., Yuan, Y.F., Zhang, Y.Q.
PDB entry 7yg2: Cryo-EM structure of human IgM-Fc in complex with the J chain and the DBL domain of DBLMSP2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2022-07-09
Authors: Shen, H., Ji, C., Xiao, J.
PDB entry 7yg3: Crystal structure of HLA-B*13:01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-11
Authors: Wang, H.S., Ouyang, S.Y.
PDB entry 7yg4: Structure of WTAP-VIRMA in the m6A writer complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-11
Authors: Yan, X.H., Guan, Z.Y., Tang, C., Yin, P.
PDB entry 7yg5: Structure of human R-type voltage-gated CaV2.3-alpha2/delta1-beta1 channel complex in the topiramate-bound state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-11
Authors: Gao, Y., Zhao, Y.
PDB entry 7yg6: Cryo-EM structure of the EfPiwi(N959K) in complex with piRNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ephydatia fluviatilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-11
Authors: Li, Z.Q., Liu, H.B., Wu, J.P., Shen, E.Z.
PDB entry 7yg7: Structure of the Spring Viraemia of Carp Virus ribonucleoprotein Complex
Classification: VIRUS LIKE PARTICLE/RNA
Source organism: Sprivivirus cyprinus; Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-11
Authors: Liu, B., Wang, Z.X., Yang, T., Yu, D.Q., Ouyang, Q.
PDB entry 7yg8: Cryo-EM structure of Tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing
Classification: RNA
Source organism: Tetrahymena; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2022-07-11
Authors: Li, S., Michael, Z.P., Zhang, X., Greg, P., Zhang, K.
PDB entry 7yg9: Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the second-step self-splicing
Classification: RNA
Source organism: Tetrahymena; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2022-07-11
Authors: Li, S., Michael, Z.P., Zhang, X., Greg, P., Zhang, K.
PDB entry 7yga: Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the second-step self-splicing
Classification: RNA
Source organism: Tetrahymena; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2022-07-11
Authors: Li, S., Michael, Z.P., Zhang, X., Greg, P., Zhang, K.
PDB entry 7ygb: Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the second-step self-splicing
Classification: RNA
Source organism: Tetrahymena; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-07-11
Authors: Li, S., Michael, Z.P., Zhang, X., Greg, P., Zhang, K.
PDB entry 7ygc: Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the second-step self-splicing
Classification: RNA
Source organism: Tetrahymena thermophila; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2022-07-11
Authors: Li, S., Michael, Z.P., Zhang, X., Greg, P., Zhang, K.
PDB entry 7ygd: Cryo-EM structure of Tetrahymena ribozyme conformation 6 undergoing the second-step self-splicing
Classification: RNA
Source organism: Tetrahymena; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2022-07-11
Authors: Li, S., Michael, Z.P., Zhang, X., Greg, P., Zhang, K.
PDB entry 7ygf: Crystal structure of YggS from Fusobacterium nucleatum
Classification: BIOSYNTHETIC PROTEIN
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2022-07-11
Authors: He, S.R., Chan, Y.Y., Wang, L.L., Bai, X., Bu, T.T., Zhang, J., Xu, Y.B.
PDB entry 7ygg: Crystal structure of human CD47 in complex with engineered SIRPa.D1(N80A)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2022-07-11
Authors: Yu, J., Tian, W.
PDB entry 7ygh: Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with cyclic-tetraadenylate (cA4)
Classification: HYDROLASE
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2022-07-11
Authors: Lin, Z., Du, L., Luo, Z.
PDB entry 7ygi: Crystal structure of p53 DBD domain in complex with azurin
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens; Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-11
Authors: Jiang, W.X., Zuo, J.Q., Hu, J.J., Chen, X.Q., Ma, L.X., Liu, Z., Xing, Q.
PDB entry 7ygk: Crystal structure of a secretory phospholipase A2 from Sciscionella marina
Classification: HYDROLASE
Source organism: Sciscionella marina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2022-07-11
Authors: Kang, B.G., Cha, S.S.
PDB entry 7ygl: Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediate
Classification: HYDROLASE
Source organism: Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-11
Authors: Lin, Z., Du, L., Luo, Z.
PDB entry 7ygn: Cryo-EM structure of the Mili in complex with piRNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-11
Authors: Li, Z.Q., Liu, H.B., Wu, J.P., Shen, E.Z.
PDB entry 7ygo: DNA duplex containing 5OHU-Hg(II)-T base pairs
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.403 Å
Deposited: 2022-07-12
Authors: Kondo, J., Torigoe, H., Arakawa, F.
PDB entry 7ygp: DNA duplex containing 5OHU-T base pairs
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2022-07-12
Authors: Kondo, J., Torigoe, H., Arakawa, F.
PDB entry 7ygq: Crystal structure of SARS main protease in complex with inhibitor YH-53
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-07-12
Authors: Lin, C., Zhong, F.L., Zhou, X.L., Zeng, P., Zhang, J., Li, J.
PDB entry 7ygv: Crystal structure of the Ca2+-bound EFhd1/Swiprosin-2
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-12
Authors: Mun, S.A., Park, J., Kang, J.Y., Park, T., Jin, M., Ynag, J., Eom, S.H.
PDB entry 7ygw: Crystal structure of the Zn2+-bound EFhd1/Swiprosin-2
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-07-12
Authors: Mun, S.A., Park, J., Kang, J.Y., Park, T., Jin, M., Yang, J., Eom, S.H.
PDB entry 7ygy: Crystal structure of the Zn2+-bound EFhd2/Swiprosin-1
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-07-12
Authors: Mun, S.A., Park, J., Kang, J.Y., Park, T., Jin, M., Yang, J., Eom, S.H.
PDB entry 7yh1: Roadblock from Candidatus Prometheoarchaeum syntrophicum strain MK-D1
Classification: UNKNOWN FUNCTION
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2022-07-12
Authors: Robinson, R.C., Tran, L.T.
PDB entry 7yh2: TRAPPC3 from Thorarchaeota AB25
Classification: UNKNOWN FUNCTION
Source organism: Candidatus Thorarchaeota archaeon AB_25
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-07-12
Authors: Robinson, R.C., Tran, L.T.
PDB entry 7yh3: TRAPPC3 from Thorarchaeota SMTZ1-45
Classification: UNKNOWN FUNCTION
Source organism: Candidatus Thorarchaeota archaeon SMTZ1-45
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-12
Authors: Robinson, R.C., Tran, L.T.
PDB entry 7yh4: Crystal structure of human cytosolic beta-alanyl lysine dipeptidase (PM20D2)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2022-07-12
Authors: Chandravanshi, K., Gaur, N.K., Kumar, A., Makde, R.D.
PDB entry 7yh5: MazG(Mycobacterium tuberculosis)
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-07-12
Authors: Li, J., Wang, S.
PDB entry 7yh6: Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-8
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-12
Authors: Moriyama, S., Anraku, Y., Muranishi, S., Adachi, Y., Kuroda, D., Higuchi, Y., Kotaki, R., Tonouchi, K., Yumoto, K., Suzuki, T., Kita, S., Someya, T., Fukuhara, H., Kuroda, Y., Yamamoto, T., Onodera, T., Fukushi, S., Maeda, K., Nakamura-Uchiyama, F., Hashiguchi, T., Hoshino, A., Maenaka, K., Takahashi, Y.
PDB entry 7yh7: SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 2)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-13
Authors: Moriyama, S., Anraku, Y., Muranishi, S., Adachi, Y., Kuroda, D., Higuchi, Y., Kotaki, R., Tonouchi, K., Yumoto, K., Suzuki, T., Kita, S., Someya, T., Fukuhara, H., Kuroda, Y., Yamamoto, T., Onodera, T., Fukushi, S., Maeda, K., Nakamura-Uchiyama, F., Hashiguchi, T., Hoshino, A., Maenaka, K., Takahashi, Y.
PDB entry 7yh8: Crystal structure of a heterochiral protein complex
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-07-13
Authors: Liang, M., Li, S., Wang, T., Liu, L., Lu, P.
PDB entry 7yh9: Crystal structure of IMP-1 MBL in complex with 3-(4-benzyl-1H-1,2,3-triazol-1-yl)phthalic acid
Classification: HYDROLASE/INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2022-07-13
Authors: Li, G.-B., Yan, Y.-H.
PDB entry 7yha: Crystal structure of IMP-1 MBL in complex with (3-(4-(p-tolyl)-1H-1,2,3-triazol-1-yl)benzyl)phosphonic acid
Classification: HYDROLASE/INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.135 Å
Deposited: 2022-07-13
Authors: Li, G.-B., Yan, Y.-H.
PDB entry 7yhb: Crystal structure of VIM-2 MBL in complex with (2-(4-phenyl-1H-1,2,3-triazol-1-yl)benzyl)phosphonic acid
Classification: HYDROLASE/INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2022-07-13
Authors: Li, G.-B., Yan, Y.-H.
PDB entry 7yhc: Crystal structure of VIM-2 MBL in complex with 3-(4-(3-aminophenyl)-1H-1,2,3-triazol-1-yl)phthalic acid
Classification: HYDROLASE/INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.153 Å
Deposited: 2022-07-13
Authors: Li, G.-B., Yan, Y.-H.
PDB entry 7yhd: Crystal structure of VIM-2 MBL in complex with 3-(4-(4-(2-aminoethoxy)phenyl)-1H-1,2,3-triazol-1-yl)phthalic acid
Classification: HYDROLASE/INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.696 Å
Deposited: 2022-07-13
Authors: Li, G.-B., Yan, Y.-H.
PDB entry 7yhe: Crystal structure of the triple mutant CmnC-L136Q,S138G,D249Y in complex with alpha-KG
Classification: OXIDOREDUCTASE
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2022-07-13
Authors: Huang, S.J., Hsiao, Y.H., Lin, E.C., Hsiao, P.Y., Chang, C.Y.
PDB entry 7yhf: Solution structure of S3C mutant of carbohydrate binding module (CBM) of the glycoside hydrolase Family 7 cellobiohydrolase from Trichoderma reesei
Classification: HYDROLASE
Experimental method: SOLUTION NMR
Deposited: 2022-07-13
Authors: Chen, C., Feng, Y., Tan, Z.
PDB entry 7yhg: Solution structure of S-mono-mannosylated S3C mutant of carbohydrate binding module (CBM) of the glycoside hydrolase Family 7 cellobiohydrolase from Trichoderma reesei
Classification: HYDROLASE
Experimental method: SOLUTION NMR
Deposited: 2022-07-13
Authors: Chen, C., Feng, Y., Tan, Z.
PDB entry 7yhh: Solution structure of S-di-mannosylated S3C mutant of carbohydrate binding module (CBM) of the glycoside hydrolase Family 7 cellobiohydrolase from Trichoderma reesei
Classification: HYDROLASE
Experimental method: SOLUTION NMR
Deposited: 2022-07-13
Authors: Chen, C., Feng, Y., Tan, Z.
PDB entry 7yhi: Solution structure of O-di-mannosylated carbohydrate binding module (CBM) of the glycoside hydrolase Family 7 cellobiohydrolase from Trichoderma reesei
Classification: HYDROLASE
Experimental method: SOLUTION NMR
Deposited: 2022-07-13
Authors: Chen, C., Feng, Y., Tan, Z.
PDB entry 7yhj: Effector binding domain of LysR-Type transcription factor LrhA from E. coli
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.237 Å
Deposited: 2022-07-13
Authors: Xie, C., Jiang, X.
PDB entry 7yhk: Cryo-EM structure of the HA trimer of A/Beijing/262/1995(H1N1) in complex with neutralizing antibody 12H5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Influenza A virus (A/Beijing/262/1995(H1N1)); Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-07-13
Authors: Zheng, Q., Li, S., Li, T., Xue, W., Sun, H.
PDB entry 7yhl: Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with free phosphate
Classification: HYDROLASE
Source organism: Saccharolobus solfataricus P2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-07-13
Authors: Lin, Z., Du, L., Luo, Z.
PDB entry 7yhn: ANTI-TUMOR AGENT Y48 IN COMPLEX WITH TUBULIN
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-07-14
Authors: Du, T., Ji, M., Hou, Z., Lin, S., Zhang, J., Wu, D., Zhang, K., Lu, D., Xu, H., Chen, X.
PDB entry 7yho: CryoEM structure of Arabidopsis ROS1 in complex with TG mismatch dsDNA at 3.3 Angstroms resolution
Classification: DNA BINDING PROTEIN/DNA
Source organism: Arabidopsis thaliana; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-14
Authors: Du, X., Du, J.
PDB entry 7yhp: CryoEM structure of Arabidopsis ROS1 in complex with 5mC-dsDNA at 3.1 Angstroms resolution
Classification: DNA BINDING PROTEIN/DNA
Source organism: Arabidopsis thaliana; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-14
Authors: Du, X., Du, J.
PDB entry 7yhq: CryoEM structure of Arabidopsis ROS1 in complex with a covalent-linked reaction intermediate at 3.9 Angstroms resolution
Classification: DNA BINDING PROTEIN/DNA
Source organism: Arabidopsis thaliana; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-07-14
Authors: Du, X., Du, J.
PDB entry 7yhr: Anti-CRISPR protein AcrIC5
Classification: IMMUNE SYSTEM
Source organism: Pseudomonas delhiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-07-14
Authors: Kang, Y.J., Park, H.H.
PDB entry 7yhs: Structure of Csy-AcrIF4-dsDNA
Classification: IMMUNE SYSTEM/RNA/DNA
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2022-07-14
Authors: Feng, Y., Zhang, L.X.
PDB entry 7yhw: Cryo-EM structure of SARS-CoV-2 Omicron BA.2.12.1 RBD in complex with human ACE2 (local refinement)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-07-14
Authors: Zhao, Z.N., Xie, Y.F., Qi, J.X., Gao, G.F.
PDB entry 7yi0: Cryo-EM structure of Rpd3S complex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-14
Authors: Li, H.T., Yan, C.Y., Guan, H.P., Wang, P.
PDB entry 7yi1: Cryo-EM structure of Eaf3 CHD bound to H3K36me3 nucleosome
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae S288C; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-14
Authors: Li, H.T., Yan, C.Y., Guan, H.P., Wang, P.
PDB entry 7yi2: Cryo-EM structure of Rpd3S in loose-state Rpd3S-NCP complex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae S288C; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-14
Authors: Li, H.T., Yan, C.Y., Guan, H.P., Wang, P.
PDB entry 7yi3: Cryo-EM structure of Rpd3S in close-state Rpd3S-NCP complex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-14
Authors: Li, H.T., Yan, C.Y., Guan, H.P., Wang, P.
PDB entry 7yi4: Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in close state
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae S288C; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2022-07-14
Authors: Li, H.T., Yan, C.Y., Guan, H.P., Wang, P.
PDB entry 7yi5: Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in loose state
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae S288C; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2022-07-14
Authors: Li, H.T., Yan, C.Y., Guan, H.P., Wang, P.
PDB entry 7yi6: bnAb 3D1 in complex with 6-mer HR1 peptide from HCoV-229E S protein
Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human coronavirus 229E
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2022-07-15
Authors: Yan, L., Yang, G.
PDB entry 7yi7: Crystal structure of Human HPSE1 in complex with inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-15
Authors: Mima, M., Fujimoto, N., Imai, Y.
PDB entry 7yi8: Cryo-EM structure of SAH-bound MTA1-MTA9-p1-p2 complex
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-07-15
Authors: Yan, J.J., Guan, Z.Y., Liu, F.Q., Yan, X.H., Hou, M.J., Yin, P.
PDB entry 7yi9: Cryo-EM structure of SAM-bound MTA1-MTA9-p1-p2 complex
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-07-15
Authors: Yan, J.J., Guan, Z.Y., Liu, F.Q., Yan, X.H., Hou, M.J., Yin, P.
PDB entry 7yia: Crystal structure of K74A mutant of Cap4 SAVED domain-containing receptor from Enterobacter cloacae
Classification: HYDROLASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.428 Å
Deposited: 2022-07-15
Authors: Ko, T.-P., Yang, C.-S., Hou, M.-H., Wang, Y.-C., Chen, Y.
PDB entry 7yib: Crystal structure of wild-type Cap4 SAVED domain-containing receptor from Enterobacter cloacae
Classification: HYDROLASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2022-07-15
Authors: Ko, T.-P., Yang, C.-S., Hou, M.-H., Wang, Y.-C., Chen, Y.
PDB entry 7yic: Crystal structure of reductase LSADH
Classification: OXIDOREDUCTASE
Source organism: Leifsonia sp. S749
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2022-07-15
Authors: Tang, J., Liuqing, C.
PDB entry 7yid: Human KCNH5 closed state 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-16
Authors: Zhang, M.F.
PDB entry 7yie: Human KCNH5-closed state 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-16
Authors: Zhang, M.F.
PDB entry 7yif: Human KCNH5 pre-open state 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-16
Authors: Zhang, M.F.
PDB entry 7yig: Human KCNH5 pre-open state 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-16
Authors: Zhang, M.F.
PDB entry 7yih: Human KCNH5 open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-16
Authors: Zhang, M.F.
PDB entry 7yii: Carboxylesterase - RoCE
Classification: HYDROLASE
Source organism: Rhodococcus opacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-07-16
Authors: Dou, Z., Jia, P., Ni, Y., Xu, G.C.
PDB entry 7yij: Human KCNH5 pore dilation but the non-conducting state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-07-16
Authors: Zhang, M.F.
PDB entry 7yik: The structure of archaeal nuclease RecJ2 from Methanocaldococcus jannaschii
Classification: DNA BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.191 Å
Deposited: 2022-07-16
Authors: Wang, W.W., Liu, X.P.
PDB entry 7yil: The structure of GINS from Methanocaldococcus jannaschii
Classification: DNA BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-07-16
Authors: Wang, W.W., Liu, X.P.
PDB entry 7yim: Cryo-EM structure of human Alpha-fetoprotein
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-07-17
Authors: Liu, N., Liu, K., Wu, C., Liu, Z., Li, M., Wang, J., Wang, H.W.
PDB entry 7yir: Crystal structure of N-terminal PH domain of ARAP3 protein from human
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2022-07-18
Authors: Zhang, Y.J., Liu, Y.R., Wu, B.
PDB entry 7yis: Crystal structure of N-terminal PH domain of ARAP3 protein in complex with inositol 1,3,4,5-tetrakisphosphate
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-07-18
Authors: Zhang, Y.J., Liu, Y.R., Wu, B.
PDB entry 7yit: Molecular mechanism of biased signaling at the kappa opioid receptor
Classification: MEMBRANE PROTEIN/INHIBITOR/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-07-18
Authors: Kim, K., Che, T.
PDB entry 7yiu: Cryo-EM structure of the C6-ceramide-bound SPT-ORMDL3 complex
Classification: TRANSFERASE/inhibitor
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-18
Authors: Xie, T., Liu, P., Gong, X.
PDB entry 7yiv: The Crystal Structure of Human Tissue Nonspecific Alkaline Phosphatase (ALPL) at Basic pH
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2022-07-18
Authors: Cao, Y., Qin, A., Yu, Y.T., Yao, D.Q., Zhang, Q., Rao, B., Xia, Y., Lu, Y.
PDB entry 7yiw: The Crystal Structure of Human Tissue Nonspecific Alkaline Phosphatase (ALPL) at Acidic pH
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-07-18
Authors: Yu, Y.T., Yao, D.Q., Zhang, Q., Rao, B., Xia, Y., Lu, Y., Qin, A., Cao, Y.