LiteFold/PDB huggingface dataset:
PDB entry 9zq9: Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Drosophila melanogaster; Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-12-18
Authors: Kim, T.H., Jayathilake, C., Virk, R.K., Gregory-Lott, E.R.
PDB entry 9zqa: Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Drosophila melanogaster; Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-12-18
Authors: Kim, T.H., Jayathilake, C., Virk, R.K., Gregory-Lott, E.R.
PDB entry 9zqb: Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Drosophila melanogaster; Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-12-18
Authors: Kim, T.H., Jayathilake, C., Virk, R.K., Gregory-Lott, E.R.
PDB entry 9zqc: Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Drosophila melanogaster; Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2025-12-18
Authors: Kim, T.H., Jayathilake, C., Virk, R.K., Gregory-Lott, E.R.
PDB entry 9zrg: Structure of naked mole-rat ribosome (non-rotated)
Classification: RIBOSOME
Source organism: Heterocephalus glaber
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-12-19
Authors: Gutierrez-Vargas, C., De, S., Maji, S., Liu, Z., Nieb, M., Seluanov, A., Gorbunova, V., Frank, J.
PDB entry 9zrk: Cryo-EM structure of KCa3.1_I/calmodulin channel in complex with SKA111.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-12-20
Authors: Nam, Y.W., Ramanishka, A., Zhang, M.
PDB entry 9zrl: Cryo-EM structure of KCa3.1_II/calmodulin channel in complex with SKA111.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-12-20
Authors: Nam, Y.W., Ramanishka, A., Zhang, M.
PDB entry 9zrq: Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA31.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-12-20
Authors: Nam, Y.W., Ramanishka, A., Zhang, M.
PDB entry 9zru: Cryo-EM structure of Croatia 2023 H3N2 Influenza A hemagglutinin (HA) trimer
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2025-12-21
Authors: Kanai, T., Gorman, J.
PDB entry 9zs2: S. marcescens Cas10-Csm unbound to target RNA
Classification: RNA BINDING PROTEIN
Source organism: Serratia
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-12-22
Authors: Perdigao, C.C., Dokland, T., Dunkle, J.A.
PDB entry 9zt5: SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-12-23
Authors: Park, S., Ward, A.B.
PDB entry 9zt6: SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-12-23
Authors: Park, S., Ward, A.B.
PDB entry 9zt7: SARS-CoV-2 S2 in complex with COV2-2509
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-12-23
Authors: Park, S., Ward, A.B.
PDB entry 9zt8: Stabilized SARS-CoV-2 S2 apo
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-12-23
Authors: Park, S., Ward, A.B.
PDB entry 9ztc: Beta-1,3-glucan synthase Fks1 S643P from Saccharomyces Cerevisiae
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-12-23
Authors: Ren, Z., Lee, S.Y.
PDB entry 9ztl: Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex
Classification: RIBOSOME
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-12-23
Authors: Masse, M.M., Millan, N., Morgan, C., Cavagnero, S.
PDB entry 9zum: Structure of the Caulobacter crescentus RNAP alpha-CTD bound to AT rich DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Caulobacter vibrioides; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-12-24
Authors: Schumacher, M.A.
PDB entry 9zuz: Translation Initiation Factor eIF-2B complex with the Isohexide Diamine GSK735
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-12-29
Authors: Nolte, R.T.
PDB entry 9zvm: Dimer structure of Thlaspi arvense plastid biotin carboxylase
Classification: LIGASE
Source organism: Thlaspi arvense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-12-30
Authors: Madison, H.J., Van Doren, S.R., Yokom, A.L.
PDB entry 9zvr: Crystal structure of HTLV-1 protease bound to darunavir at 2.1 angstroms with truncated flaps
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Human T-cell leukemia virus type I
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-12-30
Authors: Shaqra, A.M., Lockbaum, G.J., Intravaia, L.E., Schiffer, C.A.
PDB entry 9zvu: The ubiquitin-associated domain of human thirty-eight negative kinase-1 rigidly fused to a double trigger variant of the 1TEL crystallization chaperone, alternate crystal form
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.964 Å
Deposited: 2025-12-30
Authors: Averett, B.J., Averett, J.C., Wilson, E.W., Bradford, M.J., Anderson, E., Anderson, A., Doukov, T., Moody, J.D.
PDB entry 9zwe: Soluble ectodomain of Herpes simplex virus 2 (HSV-2) glycoprotein B (gB) in the prefusion conformation in complex with 2c and D48 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human herpesvirus 2 strain HG52; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2026-01-01
Authors: Sponholtz, M.R., Johnson, N.V., McLellan, J.S.
PDB entry 9zwk: High-resolution cryo-EM structure of KdpFABC in the E1 state in lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.34 Å
Deposited: 2026-01-03
Authors: Hussein, A.K., Zhang, X., Pedersen, B.P., Stokes, D.L.
PDB entry 9zwl: High-resolution cryo-EM structure of KdpFABC in the E1-ATP state in lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2026-01-03
Authors: Hussein, A.K., Zhang, X., Pedersen, B.P., Stokes, D.L.
PDB entry 9zwm: High-resolution cryo-EM structure of KdpFABC in the E1P state in lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2026-01-03
Authors: Hussein, A.K., Zhang, X., Pedersen, B.P., Stokes, D.L.
PDB entry 9zwn: High-resolution cryo-EM structure of KdpFABC in the E2P state in lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2026-01-03
Authors: Hussein, A.K., Zhang, X., Pedersen, B.P., Stokes, D.L.
PDB entry 9zwo: High-resolution cryo-EM structure of KdpFABC in the E2 state in lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2026-01-03
Authors: Hussein, A.K., Zhang, X., Pedersen, B.P., Stokes, D.L.
PDB entry 9zxk: [a3T17] Asymmetric three turn tensegrity triangle with psuedosymmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.96 Å
Deposited: 2026-01-04
Authors: Vecchioni, S., Woloszyn, K., Sha, R., Ohayon, Y.P.
PDB entry 9zxm: DDB1 delta with compound 6
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.195 Å
Deposited: 2026-01-05
Authors: Digianantonio, K.M., Karim, M.F., Bekes, M.
PDB entry 9zxn: DDB1 delta with compound 26
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2026-01-05
Authors: Digianantonio, K.M., Karim, M.F., Bekes, M., Yang, S., Guduru, S.K.R., Caldwell, J.P.
PDB entry 9zye: Crystal structure of HTLV-1 protease bound to UMass6 at 2.7 angstroms with truncated flaps
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Human T-cell leukemia virus type I
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2026-01-05
Authors: Shaqra, A.M., Lockbaum, G.J., Intravaia, L.E., Schiffer, C.A.
PDB entry 9zyt: Crystal Structure of BRD4 Bromodomain BD1 in Complex with Small Molecule PLX-3618
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.661 Å
Deposited: 2026-01-06
Authors: Leriche, G., Barmare, F., Toth, J.I., Jamborcic, A., Kampert, T.L., Steadman, K., Yang, L., Fish, S., Daniele, E., McCarrick, M., Kallel, E.A., Li, X., Thompson, P.A., Parker, G.S., Freeman-Cook, K., Bailey, S.
PDB entry 9zyv: [asym] Two turn tensegrity triangle exhibiting hyperasymmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.1 Å
Deposited: 2026-01-06
Authors: Vecchioni, S., Woloszyn, K., Sha, R., Ohayon, Y.P.
PDB entry 9zyw: [20,21,22] Two turn tensegrity triangle with 20,21, and 22 bp edges
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.11 Å
Deposited: 2026-01-06
Authors: Vecchioni, S., Woloszyn, K., Sha, R., Ohayon, Y.P.
PDB entry 9zz4: NMR structure of CaBP1 bound to the IQ motif of Cav1.2
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2026-01-06
Authors: Salveson, I., Anderson, D.E., Bej, A., Ames, J.B.
PDB entry 9zz6: The ER membrane protein complex acts as a chaperone to promote voltage-gated calcium channel assembly
Classification: CHAPERONE/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2026-01-06
Authors: Singal, B., Biswal, M., Pleiner, T.
PDB entry 9zzr: Cryo-EM Structure of a RAD51 filament bound by ssDNA and the XRCC3-RAD51C-RAD51D-XRCC2 paralog complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2026-01-07
Authors: Ruben, E.A., Jia, L., Olsen, S.K., Wasmuth, E.V., Rawal, Y., Kwon, Y., Sung, P.
PDB entry 9zzv: Human T-cell receptor (TCR) with computationally designed orthogonal interface
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2026-01-08
Authors: Kinjo, T., Yu, S., Nicely, N.I., Leaver-Fay, A., Kim, W.Y., Kuhlman, B.
PDB entry 9zzw: Structure of human MARK3 in complex with inhibitor
Classification: SIGNALING PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2026-01-08
Authors: Mao, D.Y.L., Ogunjimi, A., Sicheri, F.
PDB entry 9zzy: ssRNA phage PRR1 virion with 3' gRNA
Classification: VIRUS
Source organism: Perrunavirus olsenii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2026-01-08
Authors: Lill, Z.R., Zhang, J.