LiteFold/PDB huggingface dataset:
PDB entry 8b1s: co-crystal of SUDV VP40 with salicylic acid
Classification: VIRAL PROTEIN
Source organism: Sudan ebolavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-12
Authors: Werner, A.-D., Krapoth, N., Norris, M.J., Heine, A., Klebe, G., Ollmann Saphire, E., Becker, S.
PDB entry 8b1t: RecBCD-DNA in complex with the phage protein Abc2
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; Salmonella phage P22; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-12
Authors: Wilkinson, M., Wilkinson, O.J., Feyerherm, C., Fletcher, E.E., Wigley, D.B., Dillingham, M.S.
PDB entry 8b1u: RecBCD-DNA in complex with the phage protein Abc2 and host PpiB
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; Salmonella phage P22; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-12
Authors: Wilkinson, M., Wilkinson, O.J., Feyerherm, C., Fletcher, E.E., Wigley, D.B., Dillingham, M.S.
PDB entry 8b1v: Dihydroprecondylocarpine acetate synthase 2 from Tabernanthe iboga
Classification: CYTOSOLIC PROTEIN
Source organism: Tabernanthe iboga
Experimental method: X-RAY DIFFRACTION
Resolution: 1.882 Å
Deposited: 2022-09-12
Authors: Langley, C., Basquin, J., Caputi, L., O'Connor, S.E.
PDB entry 8b1w: NDM-1 metallo-beta-lactamase in complex with triazole-based inhibitor CP35
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-12
Authors: Vascon, F., Lazzarato, L., Bersani, M., Gianquinto, E., Docquier, J.D., Spyrakis, F., Tondi, D., Cendron, L.
PDB entry 8b1x: Solution NMR structure of the single alpha helix peptide (P3-7)2
Classification: DE NOVO PROTEIN
Source organism: unidentified
Experimental method: SOLUTION NMR
Deposited: 2022-09-12
Authors: Escobedo, A., Coles, M., Diercks, T., Garcia, J., Millet, O., Salvatella, X.
PDB entry 8b1y: STRUCTURE OF PORCINE PANCREATIC ELASTASE BOUND TO A FRAGMENT OF A 5-AZAINDAZOLE INHIBITOR
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2022-09-12
Authors: Ferraroni, M., Giovannoni, P., Gerace, A.
PDB entry 8b1z: NDM-1 metallo-beta-lactamase in complex with triazole-based inhibitor CP56
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-12
Authors: Vascon, F., Lazzarato, L., Bersani, M., Gianquinto, E., Docquier, J.D., Spyrakis, F., Tondi, D., Cendron, L.
PDB entry 8b20: NDM-1 metallo-beta-lactamase in complex with triazole-based inhibitor CP57
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-09-12
Authors: Vascon, F., Lazzarato, L., Bersani, M., Gianquinto, E., Docquier, J.D., Spyrakis, F., Tondi, D., Cendron, L.
PDB entry 8b21: Time-resolved structure of K+-dependent Na+-PPase from Thermotoga maritima 0-60-seconds post reaction initiation with Na+
Classification: MEMBRANE PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-09-12
Authors: Strauss, J., Vidilaseris, K., Goldman, A.
PDB entry 8b22: Time-resolved structure of K+-dependent Na+-PPase from Thermotoga maritima 300-seconds post reaction initiation with Na+
Classification: MEMBRANE PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 3.98 Å
Deposited: 2022-09-12
Authors: Strauss, J., Vidilaseris, K., Goldman, A.
PDB entry 8b23: Time-resolved structure of K+-dependent Na+-PPase from Thermotoga maritima 600-seconds post reaction initiation with Na+
Classification: MEMBRANE PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 3.84 Å
Deposited: 2022-09-12
Authors: Strauss, J., Vidilaseris, K., Goldman, A.
PDB entry 8b24: Time-resolved structure of K+-dependent Na+-PPase from Thermotoga maritima 3600-seconds post reaction initiation with Na+
Classification: MEMBRANE PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 4.53 Å
Deposited: 2022-09-12
Authors: Strauss, J., Vidilaseris, K., Goldman, A.
PDB entry 8b25: Dihydroprecondylocarpine acetate synthase 2 from Tabernanthe iboga - stemmadenine acetate bound structure
Classification: CYTOSOLIC PROTEIN
Source organism: Tabernanthe iboga
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2022-09-13
Authors: Langley, C., Basquin, J., Caputi, L., O'Connor, S.E.
PDB entry 8b26: Dihydroprecondylocarpine acetate synthase 2 from Tabernanthe iboga
Classification: CYTOSOLIC PROTEIN
Source organism: Tabernanthe iboga
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-09-13
Authors: Langley, C., Basquin, J., Caputi, L., O'Connor, S.E.
PDB entry 8b27: Dihydroprecondylocarpine acetate synthase from Catharanthus roseus
Classification: CYTOSOLIC PROTEIN
Source organism: Catharanthus roseus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-09-13
Authors: Langley, C., Basquin, J., Caputi, L., O'Connor, S.E.
PDB entry 8b28: Structure of an intron-retention variant of the plant immune signalling protein EDS1 from Vitis vinifera
Classification: IMMUNE SYSTEM
Source organism: Vitis vinifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-09-13
Authors: Voss, M., Niefind, K.
PDB entry 8b29: Human carbonic anhydrase II containing 6-fluorotryptophanes.
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-13
Authors: Pham, L.B.T., Costantino, A., Barbieri, L., Calderone, V., Luchinat, E., Banci, L.
PDB entry 8b2a: Crystal structure of type I dehydroquinase from Staphylococcus aureus inhibited by a hydroxylamine derivative
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-09-13
Authors: Otero, J.M., Rodriguez, A., Maneiro, M., Lence, E., Thompson, P., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.
PDB entry 8b2b: Crystal structure of type I dehydroquinase from Salmonella typhi inhibited by a hydroxylamine derivative
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-09-13
Authors: Otero, J.M., Rodriguez, A., Maneiro, M., Lence, E., Thompson, P., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.
PDB entry 8b2c: Crystal structure of type I dehydroquinase from Salmonella typhi inhibited by an epoxide derivative
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-09-13
Authors: Otero, J.M., Rodriguez, A., Maneiro, M., Lence, E., Thompson, P., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.
PDB entry 8b2d: CRYSTAL STRUCTURE OF BACTERIAL FLAVIN CONTAINING MONOOXYGENASE THERMORESISTANT MUTANT, IN COMPLEX WITH NADP+
Classification: OXIDOREDUCTASE
Source organism: Methylophaga aminisulfidivorans MP
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2022-09-13
Authors: Cea-Rama, I., Sanz-Aparicio, J., Ferrer Martinez, M., Goris, M., Bjerga, G.
PDB entry 8b2e: Muramidase from Kionochaeta sp natural catalytic core
Classification: HYDROLASE
Source organism: Kionochaeta sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-09-13
Authors: Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.
PDB entry 8b2f: SH3-like cell wall binding domain of the GH24 family muramidase from Trichophaea saccata in complex with triglycine
Classification: HYDROLASE
Source organism: Trichophaea saccata; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.183 Å
Deposited: 2022-09-13
Authors: Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.
PDB entry 8b2g: SH3-like domain from Penicillium virgatum muramidase
Classification: HYDROLASE
Source organism: Penicillium virgatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-13
Authors: Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.
PDB entry 8b2h: Muramidase from Thermothielavioides terrestris, catalytic domain
Classification: HYDROLASE
Source organism: Thermothielavioides terrestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2022-09-13
Authors: Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.
PDB entry 8b2i: Ternary structure of 14-3-3s, ERRg phosphopeptide and dual-reactive compound 4
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-09-14
Authors: Somsen, B.A., Ottmann, C.
PDB entry 8b2j: Crystal structure of human STING in complex with ADU-S100
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.174 Å
Deposited: 2022-09-14
Authors: Nawrotek, A., Vuillard, L., Miallau, L.
PDB entry 8b2k: Ternary structure of 14-3-3s, RND3 phosphopeptide and dual-reactive compound 10
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-09-14
Authors: Somsen, B.A., Ottmann, C.
PDB entry 8b2l: Cryo-EM structure of the plant 80S ribosome
Classification: RIBOSOME
Source organism: Nicotiana tabacum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-09-14
Authors: Smirnova, J., Loerke, J., Kleinau, G., Schmidt, A., Buerger, J., Meyer, E.H., Mielke, T., Scheerer, P., Bock, R., Spahn, C.M.T., Zoschke, R.
PDB entry 8b2m: Matrix-metallopeptidase inhibitor Potempin A (PotA) from Tannerella forsythia
Classification: HYDROLASE INHIBITOR
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-14
Authors: Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.
PDB entry 8b2n: Potempin A (PotA) from Tannerella forsythia in complex with the catalytic domain of human MMP-12
Classification: HYDROLASE INHIBITOR
Source organism: Homo sapiens; Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-09-14
Authors: Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.
PDB entry 8b2o: Millisecond cryo-trapping by the spitrobot crystal plunger, CTX-M-14 E166A, Ampicillin, 5 sec
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2022-09-14
Authors: Mehrabi, P., Sung, S., von Stetten, D., Prester, A., Hatton, C.E., Kleine-Doepke, S., Berkes, A., Gore, G., Leimkohl, J.P., Schikora, H., Kollewe, M., Rohde, H., Wilmanns, M., Tellkamp, F., Schulz, E.C.
PDB entry 8b2p: CYP153A71 from Acinetobacter dieselolei bound to octanoic acid
Classification: OXIDOREDUCTASE
Source organism: Alcanivorax dieselolei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-09-14
Authors: Opperman, D.J., Tolmie, C.
PDB entry 8b2q: Matrix-metallopeptidase inhibitor Potempin A (PotA) from Tannerella forsythia in complex with T. forsythia karilysin.
Classification: HYDROLASE INHIBITOR
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-09-14
Authors: Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.
PDB entry 8b2r: Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with a rice (Oryza sativa) RGA5 HMA domain mutant.
Classification: ANTIFUNGAL PROTEIN
Source organism: Oryza sativa; Pyricularia oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2022-09-14
Authors: Bentham, A.R., Banfield, M.J.
PDB entry 8b2s: GH24 family muramidase from Trichophaea saccata with an SH3-like cell wall binding domain
Classification: HYDROLASE
Source organism: Trichophaea saccata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-09-14
Authors: Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.
PDB entry 8b2t: SARS-CoV-2 Main Protease (Mpro) in complex with nirmatrelvir alkyne
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.893 Å
Deposited: 2022-09-14
Authors: Owen, C.D., Crawshaw, A.D., Warren, A.J., Trincao, J., Zhao, Y., Brewitz, L., Malla, T.R., Salah, E., Petra, L., Strain-Damerell, C., Schofield, C.J., Walsh, M.A.
PDB entry 8b2u: Crystal structure of SUDV VP40 in complex with salicylic acid
Classification: VIRAL PROTEIN
Source organism: Sudan ebolavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-14
Authors: Werner, A.-D., Krapoth, N., Norris, M.J., Heine, A., Klebe, G., Ollmann Saphire, E., Becker, S.
PDB entry 8b2v: Millisecond cryo-trapping by the spitrobot crystal plunger, CTX-M-14 E166A Ampicillin, 1 sec
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2022-09-14
Authors: Mehrabi, P., Sung, S., von Stetten, D., Prester, A., Hatton, C.E., Kleine-Doepke, S., Berkes, A., Gore, G., Leimkohl, J.P., Schikora, H., Kollewe, M., Rohde, H., Wilmanns, M., Tellkamp, F., Schulz, E.C.
PDB entry 8b2w: Millisecond cryo-trapping by the spitrobot crystal plunger, CTX-M-14 E166A, Ampicillin, 500 MS
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-09-14
Authors: Mehrabi, P., Sung, S., von Stetten, D., Prester, A., Hatton, C.E., Kleine-Doepke, S., Berkes, A., Gore, G., Leimkohl, J.P., Schikora, H., Kollewe, M., Rohde, H., Wilmanns, M., Tellkamp, F., Schulz, E.C.
PDB entry 8b2x: Structure of the type I-G CRISPR effector
Classification: GENE REGULATION
Source organism: Thioalkalivibrio sulfidiphilus HL-EbGr7
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2022-09-15
Authors: Shangguan, Q., Graham, S., Sundaramoorthy, R., White, M.F.
PDB entry 8b2y: Structure of the weakly red fluorescent protein csiFP4 from Clytia simplex
Classification: FLUORESCENT PROTEIN
Source organism: Clytia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2022-09-15
Authors: Depernet, H., Engilberge, S., Lambert, G., Gotthard, G., Shaner, N., Royant, A.
PDB entry 8b30: Structure of the Reconstructed Ancestor of Phenolic Acid Decarboxylase AncPAD31
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-15
Authors: Mokos, D., Schruefer, A., Gruber, K., Daniel, B.
PDB entry 8b31: Crystal structure of UDP-glucose pyrophosphorylase from Thermocrispum agreste DSM 44070
Classification: TRANSFERASE
Source organism: Thermocrispum agreste DSM 44070
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-09-15
Authors: Laustsen, J.U., Kumpf, A., Bento, I.
PDB entry 8b32: Chalcone synthase from Hordeum vulgare complexed with CoA
Classification: TRANSFERASE
Source organism: Hordeum vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-15
Authors: Zhang, L., Groves, M.R.
PDB entry 8b34: Structure of Human Aldose Reductase Mutant A299G with a Citrate Molecule Bound in the Anion Binding Pocket
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2022-09-15
Authors: Hubert, L.-S., Heine, A., Klebe, G.
PDB entry 8b35: Chalcone synthase from Hordeum vulgare complexed with CoA and naringenin
Classification: TRANSFERASE
Source organism: Hordeum vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-15
Authors: Zhang, L., Groves, M.R.
PDB entry 8b37: Crystal structure of Pyrobaculum aerophilum potassium-independent proton pumping membrane integral pyrophosphatase in complex with imidodiphosphate and magnesium, and with bound sulphate
Classification: MEMBRANE PROTEIN
Source organism: Pyrobaculum aerophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.84 Å
Deposited: 2022-09-16
Authors: Strauss, J., Wilkinson, C., Vidilaseris, K., Ribeiro, O., Liu, J., Hillier, J., Malinen, A., Gehl, B., Jeuken, L.C., Pearson, A.R., Goldman, A.
PDB entry 8b38: Chaetoceros socialis forma radians RNA virus 1 full capsid atomic model
Classification: VIRUS
Source organism: Chaetoceros socialis forma radians RNA virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-16
Authors: Wang, H., Okamoto, K., Munke, A.
PDB entry 8b39: Small molecular stabilizer for ERalpha and 14-3-3 (1080299)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-09-16
Authors: Visser, E.J., Vandenboorn, E.M.F., Ottmann, C.
PDB entry 8b3a: catalytic amyloid fibril formed by Ac-LHLHLRL-amide
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-16
Authors: Heerde, T., Schmidt, M., Faendrich, M.
PDB entry 8b3b: Structure of metacyclic VSG (mVSG) 531 from Trypanosoma brucei
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.949 Å
Deposited: 2022-09-16
Authors: Chandra, M., Stebbins, C.E.
PDB entry 8b3c: Chalcone synthase from Hordeum vulgare complexed with CoA and eriodictyol
Classification: TRANSFERASE
Source organism: Hordeum vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-16
Authors: Zhang, L., Groves, M.R.
PDB entry 8b3d: Structure of the Pol II-TCR-ELOF1 complex.
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa domesticus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-09-16
Authors: Kokic, G., Cramer, P.
PDB entry 8b3e: Variant Surface Glycoprotein VSG397
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2022-09-16
Authors: Zeelen, J.P., Stebbins, C.E., Dakovic, S., Foti, K.
PDB entry 8b3f: Pol II-CSB-CSA-DDB1-ELOF1
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa domesticus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-16
Authors: Kokic, G., Cramer, P.
PDB entry 8b3g: C(N)RL4CSA-UVSSA-E2-ubiquitin complex.
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2022-09-16
Authors: Kokic, G., Cramer, P.
PDB entry 8b3i: CRL4CSA-E2-Ub (state 2)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-09-16
Authors: Kokic, G., Cramer, P.
PDB entry 8b3j: Chaetoceros socialis forma radians RNA virus 1 empty capsid atomic model
Classification: VIRUS
Source organism: Chaetoceros socialis forma radians RNA virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-16
Authors: Wang, H., Okamoto, K., Munke, A.
PDB entry 8b3k: Crystal structure of human Plexin-B1 (20-535) in the unbound state
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.685 Å
Deposited: 2022-09-16
Authors: Cowan, R., Hall, G., Carr, M.
PDB entry 8b3l: Hen Egg White Lysozyme 2s in situ crystallization
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-09-16
Authors: Henkel, A., Galchenkova, M., Yefanov, O., Hakanpaeae, J., Chapman, H.N., Oberthuer, D.
PDB entry 8b3m: Millisecond cryo-trapping by the spitrobot crystal plunger, CTXM-14 Avibactam complex, SSX, 1 sec
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-09-16
Authors: Mehrabi, P., Sung, S., von Stetten, D., Prester, A., Hatton, C.E., Kleine-Doepke, S., Berkes, A., Gore, G., Leimkohl, J.P., Schikora, H., Kollewe, M., Rohde, H., Wilmanns, M., Tellkamp, F., Schulz, E.C.
PDB entry 8b3n: Human Aldose Reductase Mutant A299G/L300G in Complex with a Ligand with an IDD Structure (3-({[2-(carboxymethoxy)-4-fluorobenzoyl]amino}methyl)benzoic acid)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2022-09-16
Authors: Hubert, L.-S., Heine, A., Klebe, G.
PDB entry 8b3o: CryoEM structure of the pointy tip (proteins pIII/pVI/pVIII) from the f1 filamentous bacteriophage
Classification: VIRUS
Source organism: Enterobacteria phage f1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2022-09-16
Authors: Conners, R., McLaren, M., Gold, V.A.M.
PDB entry 8b3p: CryoEM structure of the round tip (proteins pVII/pVIII/pIX) from the f1 filamentous bacteriophage
Classification: VIRUS
Source organism: Enterobacteria phage f1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2022-09-16
Authors: Conners, R., McLaren, M., Gold, V.A.M.
PDB entry 8b3q: CryoEM structure of the central filamentous region of the f1 filamentous bacteriophage, consisting of the major capsid protein pVIII
Classification: VIRUS
Source organism: Enterobacteria phage f1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2022-09-16
Authors: Conners, R., McLaren, M., Gold, V.A.M.
PDB entry 8b3r: Human Aldose Reductase Mutant A299G/L300G in Complex with a Ligand with an IDD Structure ({5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.96 Å
Deposited: 2022-09-16
Authors: Hubert, L.-S., Heine, A., Klebe, G.
PDB entry 8b3s: Structure of YjbA in complex with ClpC N-terminal Domain
Classification: UNKNOWN FUNCTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-09-16
Authors: Evans, N.J., Isaacson, R.L., Camp, A.H., Collins, M.K.
PDB entry 8b3t: Hen Egg White Lysozyme 4s in situ crystallization
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-09-16
Authors: Henkel, A., Galchenkova, M., Yefanov, O., Hakanpaeae, J., Chapman, H.N., Oberthuer, D.
PDB entry 8b3u: Hen Egg White Lysozyme 6s in situ crystallization
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-09-16
Authors: Henkel, A., Galchenkova, M., Yefanov, O., Hakanpaeae, J., Chapman, H.N., Oberthuer, D.
PDB entry 8b3v: Hen Egg White Lysozyme 8s in situ crystallization
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2022-09-16
Authors: Henkel, A., Galchenkova, M., Yefanov, O., Hakanpaeae, J., Chapman, H.N., Oberthuer, D.
PDB entry 8b3w: Structure of metacyclic VSG (mVSG) 1954 from Trypanosoma brucei
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.681 Å
Deposited: 2022-09-17
Authors: Chandra, M., Stebbins, C.E.
PDB entry 8b3x: High resolution crystal structure of dimeric SUDV VP40
Classification: VIRAL PROTEIN
Source organism: Sudan ebolavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.531 Å
Deposited: 2022-09-17
Authors: Werner, A.-D., Norris, M., Saphire, E.O., Becker, S.
PDB entry 8b3y: Native Thermogutta terrifontis endoglucanase catalytic domain with a linker at C-terminal from glycoside hydrolase family 5 (TtEnd5A-CDC)
Classification: HYDROLASE
Source organism: Thermogutta terrifontis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2022-09-17
Authors: Hussain, N., Naismith, J.H., Mikolajek, H.
PDB entry 8b3z: SigE N-terminal Domain
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-09-18
Authors: Evans, N.J., Isaacson, R.L., Collins, K.M., Camp, A.H.
PDB entry 8b40: Structure of homomeric LRRC8C Volume-Regulated Anion Channel
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2022-09-19
Authors: Sawicka, M., Dutzler, R.
PDB entry 8b41: Structure of heteromeric LRRC8A/C (1:1 co-transfected) Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-19
Authors: Sawicka, M., Dutzler, R.
PDB entry 8b42: Structure of heteromeric LRRC8A/C Volume-Regulated Anion Channel.
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2022-09-19
Authors: Sawicka, M., Dutzler, R.
PDB entry 8b43: Crystal structure of ferrioxamine transporter
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2022-09-19
Authors: Josts, I., Tidow, H.
PDB entry 8b45: Structure of CC-Tri with Aib@b,c: CC-Tri-(UbUc)4
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-19
Authors: Kumar, P., Martin, F.J.O., Dawson, W.M., Zieleniewski, F., Woolfson, D.N.
PDB entry 8b46: Crystal structure of the SUN1-KASH6 9:9 complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2022-09-19
Authors: Gurusaran, M., Erlandsen, B.S., Davies, O.R.
PDB entry 8b47: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a cyclic di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2022-09-20
Authors: Gelin, M., Labesse, G.
PDB entry 8b48: Structure of Lentithecium fluviatile carbohydrate esterase from the CE15 family (LfCE15C)
Classification: HYDROLASE
Source organism: Lentithecium fluviatile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-09-20
Authors: Scholzen, K., Mazurkewich, S., Poulsen, J.C.N., Larsbrink, J., Lo Leggio, L.
PDB entry 8b49: STRUCTURE OF PORCINE PANCREATIC ELASTASE BOUND TO A FRAGMENT (m-toluoylcarbonyl group) OF A 5-AZAINDOLE INHIBITOR
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2022-09-20
Authors: Ferraroni, M., Giovannoni, P., Gerace, A.
PDB entry 8b4a: Nativ complex of PqsE and RhlR with autoinducer C4-HSL
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2022-09-20
Authors: Borgert, S.R., Blankenfeldt, W.
PDB entry 8b4b: ToxR bacterial transcriptional regulator bound to 19 bp ompU promoter DNA
Classification: DNA BINDING PROTEIN
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-09-20
Authors: Canals, A., Pieretti, S., Muriel, M., El Yaman, N., Fabrega-Ferrer, M., Perez-Luque, R., Krukonis, E.S., Coll, M.
PDB entry 8b4c: ToxR bacterial transcriptional regulator bound to 20 bp toxT promoter DNA
Classification: DNA BINDING PROTEIN
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2022-09-20
Authors: Canals, A., Pieretti, S., Muriel, M., El Yaman, N., Fabrega-Ferrer, M., Perez-Luque, R., Krukonis, E.S., Coll, M.
PDB entry 8b4d: ToxR bacterial transcriptional regulator bound to 40 bp toxT promoter DNA
Classification: DNA BINDING PROTEIN
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2022-09-20
Authors: Canals, A., Pieretti, S., Muriel, M., El Yaman, N., Fabrega-Ferrer, M., Perez-Luque, R., Krukonis, E.S., Coll, M.
PDB entry 8b4e: ToxR bacterial transcriptional regulator bound to 25 bp toxT promoter DNA
Classification: DNA BINDING PROTEIN
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2022-09-20
Authors: Canals, A., Pieretti, S., Muriel, M., El Yaman, N., Fabrega-Ferrer, M., Perez-Luque, R., Krukonis, E.S., Coll, M.
PDB entry 8b4f: Crystal structure of human cathepsin L forming a thiohemiacetal with N-Boc-2-aminoacetaldehyde
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-09-20
Authors: Falke, S., Lieske, J., Guenther, S., Reinke, P.Y.A., Ewert, W., Loboda, J., Karnicar, K., Usenik, A., Lindic, N., Sekirnik, A., Chapman, H.N., Hinrichs, W., Turk, D., Meents, A.
PDB entry 8b4g: Structure of a fungal LPMO bound to ligands
Classification: OXIDOREDUCTASE
Source organism: Thermoascus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.496 Å
Deposited: 2022-09-20
Authors: Banerjee, S., Huang, Z., Brander, S., Johansen, K.S., Lo Leggio, L.
PDB entry 8b4h: IstA transposase cleaved donor complex
Classification: DNA BINDING PROTEIN
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2022-09-20
Authors: Spinola-Amilibia, M., de la Gandara, A., Araujo-Bazan, L., Berger, J.M., Arias-Palomo, E.
PDB entry 8b4i: Cryo-EM structure of the Neurospora crassa TOM core complex at 3.3 angstrom
Classification: MEMBRANE PROTEIN
Source organism: Neurospora crassa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2022-09-20
Authors: Ornelas, P., Kuehlbrandt, W.
PDB entry 8b4j: Rfa1-N-terminal domain in complex with phosphorylated Ddc2
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-09-20
Authors: Yates, L.A., Zhang, X.
PDB entry 8b4k: Rfa1-N-terminal domain in complex with phosphorylated Ddc2
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-09-20
Authors: Yates, L.A., Zhang, X.
PDB entry 8b4l: Crystal structure of a selenomethionine-labeled hydropyrene synthase (M75L variant) in its closed conformation
Classification: LYASE
Source organism: Streptomyces clavuligerus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.394 Å
Deposited: 2022-09-20
Authors: Helmer, C.P.O., Driller, R., Loll, B.
PDB entry 8b4m: Crystal structure of a hydropyrene synthase (M75L variant) in its closed conformation
Classification: LYASE
Source organism: Streptomyces clavuligerus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2022-09-20
Authors: Helmer, C.P.O., Driller, R., Loll, B.
PDB entry 8b4n: X-ray structure of phycoerythrin from Porphyridium cruentum
Classification: PHOTOSYNTHESIS
Source organism: Porphyridium purpureum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-20
Authors: Merlino, A., Ferraro, G.
PDB entry 8b4o: Cryo-EM structure of cytochrome bd oxidase from C. glutamicum
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium glutamicum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2022-09-20
Authors: Grund, T.N., Kusumoto, T., Michel, H., Sakamoto, J., Safarian, S.
PDB entry 8b4q: Ternary structure of 14-3-3s, ERRg phosphopeptide and dual-reactive compound 5
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-09-20
Authors: Somsen, B.A., Ottmann, C.
PDB entry 8b4r: Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, monomeric form
Classification: ANTIMICROBIAL PROTEIN
Source organism: Capitella teleta
Experimental method: SOLUTION NMR
Deposited: 2022-09-21
Authors: Mironov, P.A., Reznikova, O.V., Paramonov, A.S., Shenkarev, Z.O.
PDB entry 8b4s: Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, dimeric form
Classification: ANTIMICROBIAL PROTEIN
Source organism: Capitella teleta
Experimental method: SOLUTION NMR
Deposited: 2022-09-21
Authors: Mironov, P.A., Reznikova, O.V., Paramonov, A.S., Shenkarev, Z.O.
PDB entry 8b4t: Human cathepsin B in complex with the carbamate inhibitor 7
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-09-21
Authors: Rubesova, P., Guetschow, M., Mares, M.
PDB entry 8b4u: The crystal structure of PET46, a PETase enzyme from Candidatus bathyarchaeota
Classification: HYDROLASE
Source organism: Candidatus Bathyarchaeota archaeon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-09-21
Authors: Costanzi, E., Applegate, V., Schumacher, J., Smits, S.H.J.
PDB entry 8b4v: X-ray structure of furin (PCSK3) in complex with benzamidine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-21
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 8b4w: X-ray structure of furin (PCSK3) in complex with 1H-isoindol-3-amine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-21
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 8b4x: X-ray structure of furin (PCSK3) in complex with Guanidinomethyl-Phac-R-Tle-K-6-(aminomethyl)-3-amino-isoindol
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-21
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 8b4z: Rosellinia necatrix megabirnavirus 1-W779 full capsid
Classification: VIRUS
Source organism: Rosellinia necatrix megabirnavirus 1/W779
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-21
Authors: Wang, H., Okamoto, K., Miyazaki, N., Suzuki, N.
PDB entry 8b50: Crystal structure of a Fab fragment in complex with L-hydroxycoumarylalanine
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2022-09-21
Authors: Meining, W., Eichinger, A., Skerra, A.
PDB entry 8b51: Usutu virus methyltransferase domain in complex with sinefungin
Classification: VIRAL PROTEIN
Source organism: Usutu virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-09-21
Authors: Ferrero, D.S., Albentosa Gonzalez, L., Mas, A., Verdaguer, N.
PDB entry 8b52: Usutu virus methyltransferase domain in complex with sinefungin
Classification: VIRAL PROTEIN
Source organism: Usutu virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2022-09-21
Authors: Ferrero, D.S., Albentosa Gonzalez, L., Mas, A., Verdaguer, N.
PDB entry 8b53: Structure of porcine pancreatic elastase bound to a fragment of a 4-azaindole inhibitor
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2022-09-21
Authors: Ferraroni, M., Gerace, A.
PDB entry 8b54: CDK2/cyclin A2 in complex with pyrazolo[4,3-d]pyrimidine inhibitor LGR6768
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-09-21
Authors: Djukic, S., Skerlova, J., Rezacova, P.
PDB entry 8b55: Human ADGRG4 PTX-like domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2022-09-21
Authors: Kieslich, B., Straeter, N.
PDB entry 8b56: Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the inhibitor GD-9
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.823 Å
Deposited: 2022-09-21
Authors: Straeter, N., Muller, C.E., Claff, T., Sylvester, K., Weisse, R., Gao, S., Song, L., Liu, X., Zhan, P.
PDB entry 8b57: Structure of prolyl endoprotease from Aspergillus niger CBS 109712
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-09-22
Authors: Pijning, T., Vujicic-Zagar, A., Van der Laan, J.M., De Jong, R.M., Dijkstra, B.W.
PDB entry 8b58: Crystal Structure of Cyclophilin TgCyp23 from Toxoplasma gondii in complex with Cyclosporin A
Classification: ISOMERASE
Source organism: Toxoplasma gondii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-09-22
Authors: Jimenez-Faraco, E., Hermoso, J.A.
PDB entry 8b59: Rosellinia necatrix megabirnavirus 1-W779 Crown protein
Classification: VIRUS
Source organism: Rosellinia necatrix megabirnavirus 1/W779
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-22
Authors: Wang, H., Okamoto, K., Miyazaki, N., Suzuki, N.
PDB entry 8b5a: Human BRD3 bromodomain 2 in complex with a H4 peptide containing ApmTri (H4K20ApmTri)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-09-22
Authors: Braun, M.B., Bartlick, N., Stehle, T.
PDB entry 8b5b: Human BRD4 bromdomain 1 in complex with a H4 peptide containing acetyl lysine and ApmTri (H4K5acK8ApmTri)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-09-22
Authors: Braun, M.B., Bartlick, N., Stehle, T.
PDB entry 8b5c: Human BRD4 bromdomain 1 in complex with a H4 peptide containing ApmTri (H4K5/8ApmTri)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-09-22
Authors: Braun, M.B., Bartlick, N., Stehle, T.
PDB entry 8b5d: Exploring the ligand binding and conformational dynamics of receptor domain 1 of the ABC transporter GlnPQ
Classification: TRANSPORT PROTEIN
Source organism: Lactococcus lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-22
Authors: Whittaker, J., Guskov, A.
PDB entry 8b5e: Exploring the ligand binding and conformational dynamics of receptor domain 1 of the ABC transporter GlnPQ
Classification: TRANSPORT PROTEIN
Source organism: Lactococcus lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-22
Authors: Whittaker, J., Guskov, A.
PDB entry 8b5f: Human cathepsin B in complex with the carbamate inhibitor 31
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-22
Authors: Rubesova, P., Guetschow, M., Mares, M.
PDB entry 8b5g: C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 7,8-dimethoxy-3-methyl-1,3-dihydro-2H-benzo[d]azepin-2-one
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.619 Å
Deposited: 2022-09-22
Authors: Chung, C.
PDB entry 8b5h: C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH (R)-7-((R)-1,2-dihydroxyethyl)-1,3-dimethyl-5-(1-methyl-1H-pyrazol-4-yl)-1,3-dihydro-2H-benzo[d]azepin-2-one
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.603 Å
Deposited: 2022-09-22
Authors: Chung, C.
PDB entry 8b5i: C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 7,8-dimethoxy-1,3-dimethyl-1,3-dihydro-2H-benzo[d]azepin-2-one
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.604 Å
Deposited: 2022-09-22
Authors: Chung, C.
PDB entry 8b5j: C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 7,8-dimethoxy-1,3-dimethyl-1,3-dihydro-2H-benzo[d]azepin-2-one
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.603 Å
Deposited: 2022-09-22
Authors: Chung, C.
PDB entry 8b5k: Structure of haloalkane dehalogenase DmmarA from Mycobacterium marinum at pH 6.5
Classification: HYDROLASE
Source organism: Mycobacterium marinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.849 Å
Deposited: 2022-09-23
Authors: Snajdarova, K., Marek, M.
PDB entry 8b5l: Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2022-09-23
Authors: Pauwels, E., Shewakramani, N.R., De Wijngaert, B., Vermeire, K., Das, K.
PDB entry 8b5m: Crystal structure of GH47 alpha-1,2-mannosidase from Caulobacter K31 strain in complex with cyclosulfamidate inhibitor
Classification: HYDROLASE
Source organism: Caulobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2022-09-23
Authors: Males, A., Davies, G.J.
PDB entry 8b5o: Structure of haloalkane dehalogenase DmmarA from Mycobacterium marinum at pH 5.5
Classification: HYDROLASE
Source organism: Mycobacterium marinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.597 Å
Deposited: 2022-09-23
Authors: Snajdarova, K., Marek, M.
PDB entry 8b5p: Ternary structure of 14-3-3s, ERRg phosphopeptide and dual-reactive compound 10
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-09-23
Authors: Somsen, B.A., Ottmann, C.
PDB entry 8b5q: Crystal Structure of P. aeruginosa WaaG in complex with UMP
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-24
Authors: Scaletti, E., Gustafsson Westergren, R., Stenmark, P.
PDB entry 8b5r: p97-p37-SPI substrate complex
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2022-09-24
Authors: van den Boom, J., Marini, G., Meyer, H., Saibil, H.
PDB entry 8b5s: Crystal Structure of P. aeruginosa WaaG in complex with UDP-glucose
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-09-24
Authors: Scaletti, E., Gustafsson Westergren, R., Stenmark, P.
PDB entry 8b5t: Crystal structure of Quinonoid dihydropteridine reductase from Leishmania major
Classification: OXIDOREDUCTASE
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-09-24
Authors: Robinson, D.A., Fairlamb, A.H.
PDB entry 8b5u: Crystal structure of Quinonoid dihydropteridine reductase from Leishmania donovani
Classification: OXIDOREDUCTASE
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-24
Authors: Robinson, D.A., Fairlamb, A.H.
PDB entry 8b5v: Crystal Structure of Trypanosoma Cruzi phosphomannosemutase
Classification: ISOMERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-24
Authors: Robinson, D.A., Ferguson, M.A.J.
PDB entry 8b5w: Crystal structure of the E3 module from UBR4
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-24
Authors: Virdee, S., Mabbitt, P.D., Barnsby-Greer, L.
PDB entry 8b5x: Crystal structure of the SUN1-KASH6 9:6 complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-09-25
Authors: Erlandsen, B.S., Gurusaran, M., Davies, O.R.
PDB entry 8b5y: SHP2 in complex with allosteric imidazopyrazine inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2022-09-25
Authors: Torrente, E., Petrocchi, A.
PDB entry 8b61: Crystal structure of BfrC protein from Bacteroides fragilis NCTC 9343
Classification: UNKNOWN FUNCTION
Source organism: Bacteroides fragilis NCTC 9343
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-09-25
Authors: Antonyuk, S.V., Barnett, K., Strange, R.W., Olczak, T.
PDB entry 8b62: Crystal Structure of P. aeruginosa WaaG in complex with UDP-galactose
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-09-25
Authors: Scaletti, E., Gustafsson Westergren, R., Stenmark, P.
PDB entry 8b63: Crystal Structure of P. aeruginosa WaaG in complex with UDP-GalNAc
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-09-25
Authors: Scaletti, E., Gustafsson Westergren, R., Stenmark, P.
PDB entry 8b64: Cryo-EM structure of RC-LH1-PufX photosynthetic core complex from Rba. capsulatus
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter capsulatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.589 Å
Deposited: 2022-09-26
Authors: Bracun, L., Yamagata, A., Shirouzu, M., Liu, L.N.
PDB entry 8b65: Structure of rsCherry crystallized in anaerobic conditions
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-09-26
Authors: Bui, T.Y.H., Van Meervelt, L.
PDB entry 8b66: Human Aldose Reductase Mutant A299G in Complex with a Ligand with an IDD Structure (3-({[2-(carboxymethoxy)-4-fluorobenzoyl]amino}methyl)benzoic acid)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2022-09-26
Authors: Hubert, L.-S., Heine, A., Klebe, G.
PDB entry 8b67: The crystal structure of M644G variant of DNA Pol Epsilon containing CTP in the polymerase active site
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-09-26
Authors: Parkash, V., Johansson, E.
PDB entry 8b68: Crystal structure of UDP-glucose pyrophosphorylase from Thermocrispum agreste DSM 44070 in complex with UDP-glucose
Classification: TRANSFERASE
Source organism: Thermocrispum agreste DSM 44070
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-26
Authors: Laustsen, J.U., Bento, I.
PDB entry 8b69: Heterotetramer of K-Ras4B(G12V) and Rgl2(RBD)
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2022-09-26
Authors: Tariq, M., Fairall, L., Romartinez-Alonso, B., Dominguez, C., Schwabe, J.W.R., Tanaka, K.
PDB entry 8b6a: Crystal structure of BfrB protein from Bacteroides fragilis NCTC 9343
Classification: UNKNOWN FUNCTION
Source organism: Bacteroides fragilis NCTC 9343
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2022-09-26
Authors: Antonyuk, S.V., Strange, R.W., Olczak, T.
PDB entry 8b6c: Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2022-09-26
Authors: Pauwels, E., Shewakramani, N.R., De Wijngaert, B., Vermeire, K., Das, K.