LiteFold/PDB huggingface dataset:
PDB entry 8fmz: Neurotensin receptor allosterism revealed in complex with a biased allosteric modulator
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Lama glama; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2022-12-26
Authors: Krumm, B.E., Diberto, J.F., Olsen, R.H.J., Kang, H., Slocum, S.T., Zhang, S., Strachan, R.T., Fay, J.F., Roth, B.L.
PDB entry 8fn0: CryoEM structure of Go-coupled NTSR1 with a biased allosteric modulator
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Lama glama; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2022-12-26
Authors: Krumm, B.E., DiBerto, J.F., Olsen, R.H.J., Kang, H., Slocum, S.T., Zhang, S., Strachan, R.T., Fay, J.F., Roth, B.L.
PDB entry 8fn1: CryoEM structure of Go-coupled NTSR1
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Rattus norvegicus; Spodoptera frugiperda; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2022-12-26
Authors: Krumm, B.E., DiBerto, J.F., Olsen, R.H.J., Kang, H., Slocum, S.T., Zhang, S., Strachan, R.T., Fay, J.F., Roth, B.L.
PDB entry 8fn2: The structure of a 50S ribosomal subunit in the Lyme disease pathogen Borreliella burgdorferi
Classification: RIBOSOME
Source organism: Borreliella burgdorferi B31
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-12-26
Authors: Sharma, M.R., Manjari, S.R., Agrawal, E.K., Keshavan, P., Koripella, R.K., Majumdar, S., Marcinkiewicz, A.L., Lin, Y.P., Agrawal, R.K., Banavali, N.K.
PDB entry 8fn3: Crystal structure of human DNA polymerase eta incorporating dITP across dC
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-12-26
Authors: Jung, H.
PDB entry 8fn4: Cryo-EM structure of RNase-treated RESC-A in trypanosomal RNA editing
Classification: RNA BINDING PROTEIN/RNA
Source organism: Trypanosoma brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-12-26
Authors: Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.
PDB entry 8fn5: Structure of the truncated catalytic domain of Streptococcus mutans GtfD
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-12-27
Authors: Schormann, N., Deivanayagam, C.
PDB entry 8fn6: Cryo-EM structure of RNase-untreated RESC-A in trypanosomal RNA editing
Classification: RNA BINDING PROTEIN/RNA
Source organism: Trypanosoma brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-12-27
Authors: Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.
PDB entry 8fn7: Structure of WT HIV-1 intasome bound to Dolutegravir
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-12-27
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fn8: Crystal structure of the C-terminal Fg domain of TNC with the single FN domain of PTPRZ
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-12-27
Authors: Bouyain, S.
PDB entry 8fn9: Crystal structure of the C-terminal Fg domain of TNR with the single FN domain of PTPRZ
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-12-27
Authors: Bouyain, S.
PDB entry 8fna: Crystal structure of the C-terminal Fg domain of human TNR
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-12-27
Authors: Bouyain, S.
PDB entry 8fnb: Crystal structure of the C-terminal Fg domain of human TNC with the mutations Y2140H and S2164H
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-12-27
Authors: Bouyain, S.
PDB entry 8fnc: Cryo-EM structure of RNase-treated RESC-C in trypanosomal RNA editing
Classification: RNA BINDING PROTEIN/RNA
Source organism: Trypanosoma brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-12-27
Authors: Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.
PDB entry 8fnd: Structure of E138K HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-12-27
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fne: phiPA3 PhuN Tetramer, p2
Classification: VIRAL PROTEIN
Source organism: Escherichia coli K-12; Pseudomonas phage PhiPA3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-12-27
Authors: Nieweglowska, E.S., Brilot, A.F., Mendez-Moran, M., Kokontis, C., Baek, M., Li, J., Cheng, Y., Baker, D., Bondy-Denomy, J., Agard, D.A.
PDB entry 8fnf: Cryo-EM structure of RNase-untreated RESC-C in trypanosomal RNA editing
Classification: RNA BINDING PROTEIN/RNA
Source organism: Trypanosoma brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-12-27
Authors: Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.
PDB entry 8fng: Structure of G140A HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-12-27
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fnh: Structure of Q148K HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-12-27
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fni: Cryo-EM structure of RNase-treated RESC-B in trypanosomal RNA editing
Classification: RNA BINDING PROTEIN/RNA
Source organism: Trypanosoma brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-12-27
Authors: Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.
PDB entry 8fnj: Structure of E138K/G140A HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-12-27
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fnk: Cryo-EM structure of RNase-untreated RESC-B in trypanosomal RNA editing
Classification: RNA BINDING PROTEIN/RNA
Source organism: Trypanosoma brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-12-27
Authors: Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.
PDB entry 8fnl: Structure of E138K/Q148K HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-12-27
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fnm: Structure of G140A/Q148K HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-12-27
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fnn: Structure of E138K/G140A/Q148K HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-12-27
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fno: Structure of E138K/G140A/Q148R HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2022-12-28
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fnp: Structure of E138K/G140S/Q148H HIV-1 intasome with Dolutegravir bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-12-28
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fnq: Structure of E138K/G140A/Q148K HIV-1 intasome with 4d bound
Classification: VIRAL PROTEIN/DNA/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-12-28
Authors: Shan, Z.L., Passos, D.O., Strutzenberg, T.S., Li, M., Lyumkis, D.
PDB entry 8fnr: X-ray crystal structure of Hansschlegelia quercus lanmodulin (LanM) with dysprosium (III) bound at pH 7
Classification: METAL BINDING PROTEIN
Source organism: Hansschlegelia quercus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-12-28
Authors: Jung, J.J., Lin, C.-Y., Boal, A.K.
PDB entry 8fns: X-ray crystal structure of Methylorubrum extorquens AM1 lanmodulin (LanM) with neodymium (III) bound at pH 7
Classification: METAL BINDING PROTEIN
Source organism: Methylorubrum extorquens AM1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2022-12-28
Authors: Jung, J.J., Lin, C.-Y., Boal, A.K.
PDB entry 8fnt: Structure of RdrA from Escherichia coli RADAR defense system
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2022-12-28
Authors: Duncan-Lowey, B., Johnson, A.G., Rawson, S., Mayer, M.L., Kranzusch, P.J.
PDB entry 8fnu: Structure of RdrA from Streptococcus suis RADAR defense system
Classification: IMMUNE SYSTEM
Source organism: Streptococcus suis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-12-28
Authors: Duncan-Lowey, B., Johnson, A.G., Rawson, S., Mayer, M.L., Kranzusch, P.J.
PDB entry 8fnv: Structure of RdrB from Escherichia coli RADAR defense system
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Deposited: 2022-12-28
Authors: Duncan-Lowey, B., Johnson, A.G., Rawson, S., Mayer, M.L., Kranzusch, P.J.
PDB entry 8fnw: Structure of RdrA-RdrB complex from Escherichia coli RADAR defense system
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.73 Å
Deposited: 2022-12-28
Authors: Duncan-Lowey, B., Johnson, A.G., Rawson, S., Mayer, M.L., Kranzusch, P.J.
PDB entry 8fnx: Crystal structure of Hyaluronate lyase B from Cutibacterium acnes
Classification: LYASE
Source organism: Cutibacterium acnes HL110PA3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-12-28
Authors: Katiki, M., McNally, R., Chatterjee, A., Hajam, I.A., Liu, G.Y., Murali, R.
PDB entry 8fny: Nucleotide-bound structure of a functional construct of eukaryotic elongation factor 2 kinase.
Classification: TRANSLATION/Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2022-12-28
Authors: Piserchio, A., Isiorho, E.A., Dalby, K.N., Ghose, R.
PDB entry 8fnz: Acetylated tau repeat 1 and 2 fragment (AcR1R2)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2022-12-29
Authors: Li, L., Nguyen, A.B., Mullapudi, V., Joachimiak, L.
PDB entry 8fo0: The structure of a crystallizable variant of E. coli pyruvate formate-lyase activating enzyme bound to a partially cleaved SAM molecule
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2022-12-29
Authors: Moody, J.D., Saxton, A.J., Galambas, A., Lawrence, C.M., Broderick, J.B.
PDB entry 8fo1: Cryo-EM structure of Cryptococcus neoformans trehalose-6-phosphate synthase homotetramer in apo form
Classification: TRANSFERASE
Source organism: Cryptococcus neoformans var. grubii H99
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-12-29
Authors: Washington, E.J., Brennan, R.G.
PDB entry 8fo2: Cryo-EM structure of Rab29-LRRK2 complex in the LRRK2 monomer state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2022-12-29
Authors: Zhu, H., Sun, J.
PDB entry 8fo3: Structure of full-length amyloidogenic immunoglobulin light chain H9 in complex with (E)-3-nitro-4-(2-(2-phenylpropylidene)hydrazineyl)benzenesulfonamide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-12-29
Authors: Yan, N.L., Wilson, I.A., Kelly, J.W.
PDB entry 8fo4: Structure of full-length amyloidogenic immunoglobulin light chain H9 in complex with 6-methyl-2-(2-((1E,2E)-3-(2-nitrophenyl)allylidene)hydrazineyl)pyrimidin-4-ol
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-12-29
Authors: Yan, N.L., Wilson, I.A., Kelly, J.W.
PDB entry 8fo5: Structure of full-length amyloidogenic immunoglobulin light chain H9 in complex with 1-(1-(phenylsulfonyl)-1H-pyrrol-3-yl)ethan-1-one
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-12-29
Authors: Yan, N.L., Wilson, I.A., Kelly, J.W.
PDB entry 8fo6: Nucleotide-free structure of a functional construct of eukaryotic elongation factor 2 kinase.
Classification: TRANSLATION/Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.553 Å
Deposited: 2022-12-29
Authors: Piserchio, A., Isiorho, E.A., Dalby, K.N., Ghose, R.
PDB entry 8fo7: Cryo-EM structure of LRRK2 bound to type I inhibitor LRRK2-IN-1
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-12-29
Authors: Zhu, H., Sun, J.
PDB entry 8fo8: Cryo-EM structure of Rab29-LRRK2 complex in the LRRK2 dimer state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2022-12-29
Authors: Zhu, H., Sun, J.
PDB entry 8fo9: Cryo-EM structure of Rab29-LRRK2 complex in the LRRK2 tetramer state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-12-30
Authors: Zhu, H., Sun, J.
PDB entry 8foa: Cryo-EM structure of human TRPV6 in complex with the natural phytoestrogen genistein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2022-12-30
Authors: Neuberger, A., Yelshanskaya, M.V., Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 8fob: Cryo-EM structure of human TRPV6 in the open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2022-12-30
Authors: Neuberger, A., Yelshanskaya, M.V., Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 8foc: Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase in Apo state conformation I
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-12-30
Authors: Yuan, Z., Georgescu, R., Li, H., O'Donnell, M.
PDB entry 8fod: Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase complex in Apo state conformation II
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-12-30
Authors: Yuan, Z., Georgescu, R., Li, H., O'Donnell, M.
PDB entry 8foe: Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase complex bound to a template DNA
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2022-12-30
Authors: Yuan, Z., Georgescu, R., Li, H., O'Donnell, M.
PDB entry 8fof: Cryo-EM of BP-ffsy filaments
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-12-30
Authors: Wang, F., Guo, J., Egelman, E.H., Xu, B.
PDB entry 8fog: Crystal structure of human DNA polymerase eta incorporating dITP across dT
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-12-30
Authors: Jung, H.
PDB entry 8foh: Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase complex in the RNA synthesis state
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2022-12-30
Authors: Yuan, Z., Georgescu, R., Li, H., O'Donnell, M.
PDB entry 8foi: Native GABA-A receptor from the mouse brain, alpha1-beta2-gamma2 subtype, in complex with GABA and allopregnanolone
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-12-30
Authors: Sun, C., Gouaux, E.
PDB entry 8foj: Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase complex in the post RNA handoff state
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2022-12-30
Authors: Yuan, Z., Georgescu, R., Li, H., O'Donnell, M.
PDB entry 8fok: Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase complex in the DNA elongation state
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2022-12-30
Authors: Yuan, Z., Georgescu, R., Li, H., O'Donnell, M.
PDB entry 8fol: The structure of a crystallizable variant of E. coli pyruvate formate-lyase activating enzyme bound to SAM, alternate crystal form
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-12-31
Authors: Moody, J.D., Saxton, A.J., Galambas, A., Lawrence, C.M., Broderick, J.B.
PDB entry 8fom: Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
Classification: RIBOSOME
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.58 Å
Deposited: 2023-01-02
Authors: Nguyen, H.A., Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.
PDB entry 8fon: Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site
Classification: RIBOSOME
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.64 Å
Deposited: 2023-01-02
Authors: Nguyen, H.A., Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.
PDB entry 8fop: Structure of Agrobacterium tumefaciens bacteriophage Milano curved tail
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-01-03
Authors: Sonani, R.R., Leiman, P.G., Wang, F., Kreutzberger, M.A.B., Sebastian, A., Esteves, N.C., Kelly, R.J., Scharf, B., Egelman, E.H.
PDB entry 8foq: Crystal Structure of Kemp Eliminase 1A53-core with bound transition state analogue
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-03
Authors: Zarifi, N., Asthana, P., Fraser, J.S., Chica, R.A.
PDB entry 8for: Crystal Structure of Kemp Eliminase KE70-core with bound transition state analogue
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-03
Authors: Zarifi, N., Asthana, P., Fraser, J.S., Chica, R.A.
PDB entry 8fos: Crystal Structure of Kemp Eliminase HG3-shell with bound transition state analogue
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-01-03
Authors: Zarifi, N., Asthana, P., Fraser, J.S., Chica, R.A.
PDB entry 8fou: Structure of Agrobacterium tumefaciens bacteriophage Milano contracted tail-tube
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-01-03
Authors: Sonani, R.R., Leiman, P.G., Wang, F., Kreutzberger, M.A.B., Sebastian, A., Esteves, N.C., Kelly, R.J., Scharf, B., Egelman, E.H.
PDB entry 8fov: AbeH (Tryptophan-5-halogenase) bound to FAD and Cl
Classification: OXIDOREDUCTASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-01-03
Authors: Ashaduzzaman, M., Bellizzi, J.J.
PDB entry 8fow: Ternary complex of CDK2 with small molecule ligands TW8672 and Dinaciclib
Classification: Cell Cycle, Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-03
Authors: Schonbrunn, E., Sun, L.
PDB entry 8fox: AbeH (Tryptophan-5-halogenase)
Classification: OXIDOREDUCTASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-01-03
Authors: Ashaduzzaman, M., Bellizzi, J.J.
PDB entry 8foy: Structure of Agrobacterium tumefaciens bacteriophage Milano contracted tail-sheath
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-03
Authors: Sonani, R.R., Leiman, P.G., Wang, F., Kreutzberger, M.A.B., Sebastian, A., Esteves, N.C., Kelly, R.J., Scharf, B., Egelman, E.H.
PDB entry 8foz: Human IMPDH2 mutant - L245P, treated with ATP, IMP, and NAD+; filament assembly interface reconstruction
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2023-01-03
Authors: O'Neill, A.G., Kollman, J.M.
PDB entry 8fp0: Ternary complex of CDK2 with small molecule ligands TW8672 and Roscovitine
Classification: Cell Cycle, Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-03
Authors: Schonbrunn, E., Sun, L.
PDB entry 8fp1: PKCeta kinase domain in complex with compound 2
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-01-03
Authors: Johnson, E.
PDB entry 8fp3: PKCeta kinase domain in complex with compound 11
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-01-03
Authors: Johnson, E.
PDB entry 8fp4: GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-01-04
Authors: Nakagawa, T.
PDB entry 8fp5: CDK2 liganded with ATP and Mg2+
Classification: Cell Cycle, Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-01-04
Authors: Schonbrunn, E., Sun, L.
PDB entry 8fp6: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-04
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fp7: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-04
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fp8: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-04
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fp9: GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2023-01-04
Authors: Nakagawa, T.
PDB entry 8fpa: Structure of a chimeric antibody (Fab) fragment bound to de-N-acetyl polysialic acid (dPSA)
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-01-04
Authors: Beernink, P.T., Agirre, J., Beernink, B.P., Moe, G.R.
PDB entry 8fpb: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-04
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fpc: Conformation 1 of the ligand binding domain (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-01-04
Authors: Nakagawa, T.
PDB entry 8fpd: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-04
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fpe: Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog T0-BP
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-01-04
Authors: Huber, A.D., Poudel, S., Seetharaman, J., Miller, D.J., Lin, W., Li, Y., Chen, T.
PDB entry 8fpf: Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP: BmrCD_IF-ATP
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-01-04
Authors: Tang, Q., Mchaourab, H.
PDB entry 8fpg: GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100uM CNQX (Closed-CaNaMg)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.32 Å
Deposited: 2023-01-04
Authors: Nakagawa, T.
PDB entry 8fph: Conformation 2 of the ligand binding domain (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-01-04
Authors: Nakagawa, T.
PDB entry 8fpi: Co-structure of the Respiratory Syncytial Virus RNA-dependent RNA polymerase with MRK-1
Classification: REPLICATION
Source organism: Human respiratory syncytial virus A2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2023-01-04
Authors: Fischmann, T.O.
PDB entry 8fpj: Co-structure of the Human Metapneunomovirus RNA-dependent RNA polymerase with MRK-1
Classification: REPLICATION
Source organism: Human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2023-01-04
Authors: Fischmann, T.O.
PDB entry 8fpk: LBD conformation 1 of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100uM CNQX (Closed-CaNaMg)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-01-04
Authors: Nakagawa, T.
PDB entry 8fpl: LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100uM CNQX (Closed-CaNaMg)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-01-04
Authors: Nakagawa, T.
PDB entry 8fpm: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-05
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fpn: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-05
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fpo: PCSK9 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.997 Å
Deposited: 2023-01-05
Authors: Xu, M., Chopra, R.
PDB entry 8fpp: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-05
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fpq: PCSK9 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.503 Å
Deposited: 2023-01-05
Authors: Xu, M., Chopra, R.
PDB entry 8fpr: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-05
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fps: GluA2 flip Q isoform N619K mutant of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg/N619K)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fpt: STRUCTURE OF ALPHA-SYNUCLEIN FIBRILS DERIVED FROM HUMAN LEWY BODY DEMENTIA TISSUE
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: SOLID-STATE NMR
Deposited: 2023-01-05
Authors: Barclay, A.M., Dhavale, D.D., Borcik, C.G., Rau, M.J., Basore, K., Milchberg, M.H., Warmuth, O.A., Kotzbauer, P.T., Rienstra, C.M., Schwieters, C.D.
PDB entry 8fpu: Crystal structure of hen egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-05
Authors: Lima, L.M.T.R., Ramos, N.G.
PDB entry 8fpv: LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fpw: Crystal structure of tumor related RhoA mutant A161V in complex with GDP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-01-05
Authors: Lin, Y., Zheng, Y.
PDB entry 8fpx: Crystal structure of tumor related RhoA mutant A161P in complex with GDP
Classification: SIGNALING PROTEIN, Hydrolase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-01-05
Authors: Lin, Y., Zheng, Y.
PDB entry 8fpy: LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fpz: LBD conformation 3 (LBDconf3) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fq1: GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 150mM CaCl2, 330uM CTZ, and 100mM L-glutamate (Open-Ca150)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.59 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fq2: LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform N619K mutant of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg/N619K)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fq3: LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform N619K mutant of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg/N619K)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fq4: AAV1 VP3 Only Capsid
Classification: VIRUS LIKE PARTICLE
Source organism: Adeno-associated virus - 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2023-01-05
Authors: Mietzsch, M., McKenna, R.
PDB entry 8fq5: GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Na110)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.34 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fq6: LBD of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 150mM CaCl2, 330uM CTZ, and 100mM L-glutamate (Open-Ca150)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fq7: Nanobody with WIW inserted in CDR3 loop to Inhibit Growth of Alzheimer's Tau fibrils
Classification: IMMUNE SYSTEM
Source organism: Camelus dromedarius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-01-05
Authors: Abskharon, R., Sawaya, M.R., Cascio, D.C., Eisenberg, D.S.
PDB entry 8fq8: LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Na110)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fq9: Crystal structure of a ligand-bound cation-site mutant D55C of a melibiose transporter
Classification: MEMBRANE PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-01-05
Authors: Guan, L.
PDB entry 8fqa: LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Na110)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fqb: GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 10mM CaCl2, 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Ca10)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2023-01-05
Authors: Nakagawa, T.
PDB entry 8fqc: Structure of baseplate with receptor binding complex of Agrobacterium phage Milano
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-01-05
Authors: Sonani, R.R., Leiman, P.G., Wang, F., Kreutzberger, M.A.B., Sebastian, A., Esteves, N.C., Kelly, R.J., Scharf, B., Egelman, E.H.
PDB entry 8fqd: LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 10mM CaCl2, 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Ca10)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-01-06
Authors: Nakagawa, T.
PDB entry 8fqe: LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 10mM CaCl2, 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Ca10)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-01-06
Authors: Nakagawa, T.
PDB entry 8fqf: GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2023-01-06
Authors: Nakagawa, T.
PDB entry 8fqg: LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-01-06
Authors: Nakagawa, T.
PDB entry 8fqh: LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-01-06
Authors: Nakagawa, T.
PDB entry 8fqj: LSD1-CoREST in complex with T14, short soaking
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-01-06
Authors: Caroli, J., Mattevi, A.
PDB entry 8fqk: Asymmetric unit of HK97 phage prohead I
Classification: VIRUS
Source organism: Escherichia phage HK97
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-01-06
Authors: Huet, A., Oh, B., Maurer, J., Duda, R.L., Conway, J.F.
PDB entry 8fql: Portal vertex of HK97 phage
Classification: VIRUS
Source organism: Escherichia phage HK97
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-01-06
Authors: Huet, A., Oh, B., Maurer, J., Duda, R.L., Conway, J.F.
PDB entry 8fqm: ADC-7 in complex with boronic acid transition state inhibitor MB076
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Fernando, M.C.
PDB entry 8fqn: apo ADC-33 beta-lactamase
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.256 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Fish, E.R.
PDB entry 8fqo: ADC-33 in complex with boronic acid transition state inhibitor MB076
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Fish, E.R.
PDB entry 8fqp: apo ADC-162 beta-lactamase
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.419 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Fernando, M.C.
PDB entry 8fqq: ADC-162 in complex with boronic acid transition state inhibitor MB076
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Fernando, M.C.
PDB entry 8fqr: Apo ADC-212 beta-lactamase
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Beardsley, T.J.
PDB entry 8fqs: ADC-212 in complex with boronic acid transition state inhibitor MB076
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M.
PDB entry 8fqt: Apo ADC-219 beta-lactamase
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Maurer, O.L.
PDB entry 8fqu: ADC-219 in complex with boronic acid transition state inhibitor MB076
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Maurer, O.L.
PDB entry 8fqv: apo ADC-30 beta-lactamase
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Ruiz, V.J.
PDB entry 8fqw: ADC-30 in complex with boronic acid transition state inhibitor MB076
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-01-06
Authors: Powers, R.A., Wallar, B.J., June, C.M., Ruiz, V.J.
PDB entry 8fqx: Carbonic Anhydrase II in complex with the alkyl ureas 3g
Classification: METAL BINDING PROTEIN, Lyase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.496 Å
Deposited: 2023-01-06
Authors: Combs, J.E., McKenna, R.
PDB entry 8fqy: Carbonic Anhydrase II in complex with the alkyl urea 3h
Classification: METAL BINDING PROTEIN, Lyase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.466 Å
Deposited: 2023-01-06
Authors: Combs, J.C., McKenna, R.
PDB entry 8fqz: Carbonic Anhydrase II in complex with the alkyl urea 3j
Classification: METAL BINDING PROTEIN, Lyase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.467 Å
Deposited: 2023-01-06
Authors: Combs, J.C., McKenna, R.
PDB entry 8fr0: LBD conformation 3 (LBDconf3) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-01-06
Authors: Nakagawa, T.
PDB entry 8fr1: Carbonic Anhydrase IX in complex with the alkyl urea compound 3g
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-06
Authors: Combs, J.C., McKenna, R.
PDB entry 8fr2: Carbonic Anhydrase IX-mimic in complex with the alkyl urea compound 3h
Classification: METAL BINDING PROTEIN, Lyase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.307 Å
Deposited: 2023-01-06
Authors: Combs, J.C., McKenna, R.
PDB entry 8fr3: E. coli EF-Tu in complex with KKL-55
Classification: TRANSLATION
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-01-06
Authors: Nguyen, H.A., Kuzmishin Nagy, A.B., Dunham, C.M.
PDB entry 8fr4: Carbonic Anhydrase IX-mimic in complex with the alkyl urea compound 3j
Classification: METAL BINDING PROTEIN, Lyase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.123 Å
Deposited: 2023-01-06
Authors: Combs, J.E., McKenna, R.
PDB entry 8fr5: Crystal structure of the Human Smacovirus 1 Rep domain
Classification: REPLICATION
Source organism: Human smacovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2023-01-06
Authors: Limon, L.K., Shi, K., Dao, A., Rugloski, J., Tompkins, K.J., Aihara, H., Gordon, W.R., Evans IIII, R.L.
PDB entry 8fr6: Antibody vFP53.02 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-01-06
Authors: Wang, S., Kwong, P.D.
PDB entry 8fr7: A hinge glycan regulates spike bending and impacts coronavirus infectivity
Classification: VIRAL PROTEIN
Source organism: Human coronavirus NL63
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-01-06
Authors: Pintilie, G., Wilson, E., Chmielewski, D., Schmid, M.F., Jin, J., Chen, M., Singharoy, A., Chiu, W.
PDB entry 8fr8: Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
Classification: TRANSLATION
Source organism: Mycolicibacterium smegmatis MC2 155; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-01-06
Authors: Majumdar, S., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8fr9: Mouse acidic mammalian chitinase, catalytic domain in complex with N,N'-diacetylchitobiose at pH 5.08
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-01-06
Authors: Diaz, R.E., Fraser, J.S.
PDB entry 8fra: Mouse acidic mammalian chitinase, catalytic domain in complex with diacetylchitobiose at pH 5.60
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-01-06
Authors: Diaz, R.E., Fraser, J.S.
PDB entry 8frb: Mouse acidic mammalian chitinase, catalytic domain in complex with N,N'-diacetylchitobiose at pH 5.25
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-01-06
Authors: Diaz, R.E., Fraser, J.S.
PDB entry 8frc: Mouse acidic mammalian chitinase, catalytic domain in complex with N,N'-diacetylchitobiose at pH 4.91
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-01-06
Authors: Diaz, R.E., Fraser, J.S.