LiteFold/PDB huggingface dataset:
PDB entry 3wqh: Crystal Structure of human DPP-IV in complex with Anagliptin
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2014-01-27
Authors: Watanabe, Y.S., Okada, S., Motoyama, T., Takahashi, R., Adachi, H., Oka, M.
PDB entry 3wqj: Crystal structure of archaerhodopsin-2 at 1.8 angstrom resolution
Classification: TRANSPORT PROTEIN
Source organism: Halobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-01-27
Authors: Kouyama, T.
PDB entry 3wqk: Crystal structure of Rv3378c with PO4
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-01-28
Authors: Chan, H.C., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Zheng, Y., Bogue, S., Nakano, C., Hoshino, T., Zhang, L., Lv, P., Liu, W., Crick, D.C., Liang, P.H., Wang, A.H., Oldfield, E., Guo, R.T.
PDB entry 3wql: Crystal structure of Rv3378c with Mg2+ and PPi
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-01-28
Authors: Chan, H.C., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Zheng, Y., Bogue, S., Nakano, C., Hoshino, T., Zhang, L., Lv, P., Liu, W., Crick, D.C., Liang, P.H., Wang, A.H., Oldfield, E., Guo, R.T.
PDB entry 3wqm: Crystal structure of Rv3378c with inhibitor BPH-629
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-01-28
Authors: Chan, H.C., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Zheng, Y., Bogue, S., Nakano, C., Hoshino, T., Zhang, L., Lv, P., Liu, W., Crick, D.C., Liang, P.H., Wang, A.H., Oldfield, E., Guo, R.T.
PDB entry 3wqn: Crystal structure of Rv3378c_Y51F with TPP
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-01-28
Authors: Chan, H.C., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Zheng, Y., Bogue, S., Nakano, C., Hoshino, T., Zhang, L., Lv, P., Liu, W., Crick, D.C., Liang, P.H., Wang, A.H., Oldfield, E., Guo, R.T.
PDB entry 3wqo: Crystal structure of D-tagatose 3-epimerase-like protein
Classification: UNKNOWN FUNCTION
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2014-01-28
Authors: Uechi, K., Takata, G., Yoneda, K., Ohshima, T., Sakuraba, H.
PDB entry 3wqp: Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis
Classification: LYASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2014-01-29
Authors: Fujihashi, M., Nishitani, Y., Kiriyama, T., Miki, K.
PDB entry 3wqq: Crystal structure of PfDXR complexed with inhibitor-3
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2014-01-31
Authors: Tanaka, N., Umeda, T.
PDB entry 3wqr: Crystal structure of pfdxr complexed with inhibitor-12
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2014-01-31
Authors: Tanaka, N., Umeda, T.
PDB entry 3wqs: Crystal structure of pfdxr complexed with inhibitor-126
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2014-01-31
Authors: Tanaka, N., Umeda, T.
PDB entry 3wqt: Staphylococcus aureus FtsA complexed with AMPPNP
Classification: STRUCTURAL GENOMICS
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-02-01
Authors: Fujita, J., Maeda, Y., Miyazaki, Y., Inoue, T., Matsumura, H.
PDB entry 3wqu: Staphylococcus aureus FtsA complexed with ATP
Classification: STRUCTURAL GENOMICS
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-02-01
Authors: Fujita, J., Maeda, Y., Miyazaki, Y., Inoue, T., Matsumura, H.
PDB entry 3wqv: Crystal structure of Ostrinia furnacalis Group I chitinase catalytic domain in complex with a(GlcN)5
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.043 Å
Deposited: 2014-02-03
Authors: Chen, L., Zhou, Y., Yang, Q.
PDB entry 3wqw: Crystal structure of Ostrinia furnacalis Group I chitinase catalytic domain in complex with a(GlcN)6
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-02-03
Authors: Chen, L., Zhou, Y., Yang, Q.
PDB entry 3wqy: Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase in complex with wild-type tRNA(Ala) having G3.U70
Classification: LIGASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2014-02-05
Authors: Naganuma, M., Sekine, S., Yokoyama, S.
PDB entry 3wqz: Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase in complex with a tRNA(Ala) variant having A3.U70
Classification: LIGASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.489 Å
Deposited: 2014-02-05
Authors: Naganuma, M., Sekine, S., Yokoyama, S.
PDB entry 3wr0: Structure of hyperthermophilic family 12 endocellulase mutant from Pyrococcus furiosus
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2014-02-06
Authors: Kataoka, M., Ishikawa, K.
PDB entry 3wr1: Crystal structure of Cormorant (Phalacrocorax carbo) hemoglobin
Classification: TRANSPORT PROTEIN
Source organism: Phalacrocorax carbo
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2014-02-09
Authors: Jagadeesan, G., Vinodh Kumar, V., Peters, H.G., Malathy, P., Harikrishna Etti, S., Gunasekaran, K., Aravindhan, S.
PDB entry 3wr2: RNase Po1 complexed with 3'GMP
Classification: HYDROLASE
Source organism: Pleurotus ostreatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2014-02-13
Authors: Hara, Y., Katsutani, T., Kobayashi, H., Suzuki, M.
PDB entry 3wr3: Crystal structure of the anaerobic DesB-gallate complex
Classification: OXIDOREDUCTASE
Source organism: Sphingobium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-02-13
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wr4: Crystal structure of the anaerobic DesB-gallate complex
Classification: OXIDOREDUCTASE
Source organism: Sphingobium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-02-13
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wr5: Structural basis on the efficient CO2 reduction of acidophilic formate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Thiobacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.142 Å
Deposited: 2014-02-16
Authors: Ha, J.M., Jeon, S.T., Yoon, H.J., Lee, H.H.
PDB entry 3wr7: Crystal Structure of Spermidine Acetyltransferase from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-02-20
Authors: Sugiyama, S., Ishikawa, S., Tomitori, S., Niiyama, M., Hirose, M., Miyazaki, Y., Higashi, K., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Kashiwagi, K., Igarashi, K., Matsumura, H.
PDB entry 3wr8: Crystal structure of DesB from Sphingobium sp. strain SYK-6
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2014-02-21
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wr9: Crystal structure of the Anaerobic DesB-Gallate complex
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-02-21
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wra: Crystal structure of the desB-Gallate complex exposed to Aerobic Atomosphere
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-02-21
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wrb: Crystal structure of the anaerobic H124F DESb-Gallate complex
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-02-21
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wrc: Crystal structure of the anaerobic DesB-Protocatechuate (PCA) complex
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-02-21
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wrd: Crystal Structure of the KIF5C Motor Domain Without Any Nucleotide
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2014-02-21
Authors: Inoue, S., Nitta, R., Hirokawa, N.
PDB entry 3wre: The crystal structure of native HypBA1 from Bifidobacterium longum JCM 1217
Classification: HYDROLASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2014-02-25
Authors: Huang, C.H., Zhu, Z., Cheng, Y.S., Chan, H.C., Ko, T.P., Chen, C.C., Wang, I., Ho, M.R., Hsu, S.T., Zeng, Y.F., Huang, Y.N., Liu, J.R., Guo, R.T.
PDB entry 3wrf: The crystal structure of native HypBA1 from Bifidobacterium longum JCM 1217
Classification: HYDROLASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2014-02-25
Authors: Huang, C.H., Zhu, Z., Cheng, Y.S., Chan, H.C., Ko, T.P., Chen, C.C., Wang, I., Ho, M.R., Hsu, S.T., Zeng, Y.F., Huang, Y.N., Liu, J.R., Guo, R.T.
PDB entry 3wrg: The complex structure of HypBA1 with L-arabinose
Classification: HYDROLASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2014-02-25
Authors: Huang, C.H., Zhu, Z., Cheng, Y.S., Chan, H.C., Ko, T.P., Chen, C.C., Wang, I., Ho, M.R., Hsu, S.T., Zeng, Y.F., Huang, Y.N., Liu, J.R., Guo, R.T.
PDB entry 3wrh: Crystal structure of P450cam
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2014-02-25
Authors: Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Mizushima, T., Shimada, H.
PDB entry 3wri: Crystal structure of P450cam
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-02-25
Authors: Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Mizushima, T., Shimada, H.
PDB entry 3wrj: Crystal structure of P450cam
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2014-02-25
Authors: Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Mizushima, T., Shimada, H.
PDB entry 3wrk: Crystal structure of P450cam
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.609 Å
Deposited: 2014-02-25
Authors: Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Mizushima, T., Shimada, H.
PDB entry 3wrl: Crystal structure of P450cam
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2014-02-25
Authors: Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Mizushima, T., Shimada, H.
PDB entry 3wrm: Crystal structure of P450cam
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-02-25
Authors: Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Mizushima, T., Shimada, H.
PDB entry 3wrn: Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique Zn2+ coordination in the active site pocket and shows a novel mode of DNA recognition at the origin of replication
Classification: REPLICATION
Source organism: Murine minute virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2014-02-27
Authors: Tewary, S.K., Zhao, H., Tang, L.
PDB entry 3wro: Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique Zn2+ coordination in the active site pocket and shows a novel mode of DNA recognition at the origin of replication
Classification: REPLICATION
Source organism: Murine minute virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2014-02-27
Authors: Tewary, S.K., Zhao, H., Tang, L.
PDB entry 3wrp: FLEXIBILITY OF THE DNA-BINDING DOMAINS OF TRP REPRESSOR
Classification: DNA BINDING REGULATORY PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1987-12-01
Authors: Zhang, R.-G., Sigler, P.B.
PDB entry 3wrq: Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique Zn2+ coordination in the active site pocket and shows a novel mode of DNA recognition at the origin of replication
Classification: REPLICATION
Source organism: Murine minute virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2014-02-27
Authors: Tewary, S.K., Zhao, H., Tang, L.
PDB entry 3wrr: Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique Zn2+ coordination in the active site pocket and shows a novel mode of DNA recognition at the origin of replication
Classification: REPLICATION
Source organism: Murine minute virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2014-02-27
Authors: Tewary, S.K., Zhao, H., Tang, L.
PDB entry 3wrs: Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique Zn2+ coordination in the active site pocket and shows a novel mode of DNA recognition at the origin of replication
Classification: REPLICATION
Source organism: Murine minute virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2014-02-27
Authors: Tewary, S.K., Zhao, H., Tang, L.
PDB entry 3wrt: Wild type beta-lactamase DERIVED FROM CHROMOHALOBACTER SP.560
Classification: HYDROLASE
Source organism: Chromohalobacter sp. 560
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-02-27
Authors: Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
PDB entry 3wru: Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA group
Classification: RNA/antibiotic
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-02-27
Authors: Maianti, J.P., Kanazawa, H., Dozzo, P., Feeney, L.A., Armstrong, E.S., Kondo, J., Hanessian, S.
PDB entry 3wrv: Crystal structure of NN domain of resistance protein
Classification: TRANSFERASE
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2014-02-27
Authors: Matsumura, H., Katoh, E.
PDB entry 3wrw: Crystal structure of the N-terminal domain of resistance protein
Classification: TRANSFERASE
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2014-02-27
Authors: Katoh, E., Kezuka, Y.
PDB entry 3wrx: Crystal structure of helicase complex 1
Classification: TRANSFERASE
Source organism: Solanum lycopersicum; Tomato mosaic virus (strain L)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-02-27
Authors: Matsumura, H., Katoh, E.
PDB entry 3wry: Crystal structure of helicase complex 2
Classification: TRANSFERASE
Source organism: Solanum lycopersicum; Tomato mosaic virus (strain L)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-02-27
Authors: Matsumura, H., Katoh, E.
PDB entry 3wrz: N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (without soaking)
Classification: HYDROLASE
Source organism: Chromohalobacter sp. 560
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-02-27
Authors: Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
PDB entry 3ws0: N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-1A)
Classification: HYDROLASE
Source organism: Chromohalobacter sp. 560
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-02-27
Authors: Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
PDB entry 3ws1: N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-1B)
Classification: HYDROLASE
Source organism: Chromohalobacter sp. 560
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-02-27
Authors: Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
PDB entry 3ws2: N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-1C)
Classification: HYDROLASE
Source organism: Chromohalobacter sp. 560
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-02-27
Authors: Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
PDB entry 3ws3: Crystal Structure of H-2D in complex with an insulin derived peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.335 Å
Deposited: 2014-02-28
Authors: Kumar, P.R., Mukherjee, G., Samanta, D., DiLorenzo, T.P., Almo, S.C., Atoms-to-Animals: The Immune Function Network (IFN), New York Structural Genomics Research Consortium (NYSGRC)
PDB entry 3ws4: N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-2A)
Classification: HYDROLASE
Source organism: Chromohalobacter sp. 560
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-02-28
Authors: Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
PDB entry 3ws5: N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-2B)
Classification: HYDROLASE
Source organism: Chromohalobacter sp. 560
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-02-28
Authors: Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
PDB entry 3ws6: Crystal Structure of H-2D in complex with a mimotopic peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2014-02-28
Authors: Kumar, P.R., Mukherjee, G., Samanta, D., DiLorenzo, T.P., Almo, S.C., Atoms-to-Animals: The Immune Function Network (IFN), New York Structural Genomics Research Consortium (NYSGRC)
PDB entry 3ws7: The 1.18 A resolution structure of L-serine 3-dehydrogenase complexed with NADP+ and sulfate ion from the hyperthermophilic archaeon Pyrobaculum calidifontis
Classification: OXIDOREDUCTASE
Source organism: Pyrobaculum calidifontis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2014-03-04
Authors: Yoneda, K., Sakuraba, H., Ohshima, T.
PDB entry 3ws8: Crystal structure of PDE10A in complex with a benzimidazole inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-03-04
Authors: Amano, Y., Honbou, K.
PDB entry 3ws9: Crystal structure of PDE10A in complex with a benzimdazole inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2014-03-04
Authors: Amano, Y., Honbou, K.
PDB entry 3wsa: The Tuberculosis Drug SQ109 Inhibits Trypanosoma cruzi Cell Proliferation and acts Synergistically with Posaconazole
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-03-05
Authors: Shang, N., Li, Q., Huang, C.H., Oldfield, E., Guo, R.T.
PDB entry 3wsb: The Tuberculosis Drug SQ109 Inhibits Trypanosoma cruzi Cell Proliferation and acts Synergistically with Posaconazole
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-03-05
Authors: Shang, N., Li, Q., Huang, C.H., Oldfield, E., Guo, R.T.
PDB entry 3wsc: Crystal structure of alginate-binding protein Algp7
Classification: ALGINATE-BINDING PROTEIN
Source organism: Sphingomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 1.992 Å
Deposited: 2014-03-07
Authors: Temtrirath, K., Murata, K., Hashimoto, W.
PDB entry 3wsd: Oxidized HcgD from Methanocaldococcus jannaschii
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-03-13
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wse: Reduced HcgD from Methanocaldococcus jannaschii
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-03-13
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wsf: Oxidized HcgD from Methanocaldococcus jannaschii with citrate
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-03-13
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wsg: Reduced HcgD from Methanocaldococcus jannaschii with citrate
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.996 Å
Deposited: 2014-03-13
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wsh: EDTA-treated, oxidized HcgD from Methanocaldococcus jannaschii
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-03-13
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wsi: EDTA-treated, reduced HcgD from Methanocaldococcus jannaschii
Classification: METAL BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-03-13
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 3wsj: HTLV-1 protease in complex with the HIV-1 protease inhibitor Indinavir
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human T-lymphotropic virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.404 Å
Deposited: 2014-03-14
Authors: Kuhnert, M., Steuber, H., Diederich, W.E.
PDB entry 3wso: Crystal structure of the Skp1-FBG3 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-03-18
Authors: Kumanomidou, T., Nishio, K., Takagi, K., Nakagawa, T., Suzuki, A., Yamane, T., Tokunaga, F., Iwai, K., Murakami, A., Yoshida, Y., Tanaka, K., Mizushima, T.
PDB entry 3wsp: Crystal Structure of P450BM3 with N-perfluorononanoyl-L-tryptophan
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-03-20
Authors: Cong, Z., Shoji, O., Kasai, C., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 3wsq: Structure of HER2 with an Fab
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2014-03-20
Authors: Fu, W.Y., Wang, Y.X., Zhou, L.J.
PDB entry 3wsr: Crystal structure of CLEC-2 in complex with O-glycosylated podoplanin
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2014-03-20
Authors: Nagae, M., Morita-Matsumoto, K., Kato, M., Kato-Kaneko, M., Kato, Y., Yamaguchi, Y.
PDB entry 3wst: Crystal structure of C.elegans PRMT7 in complex with SAH(P31)
Classification: TRANSFERASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2014-03-21
Authors: Hasegawa, M., Toma-fukai, S., Shimizu, T.
PDB entry 3wsu: Crystal structure of beta-mannanase from Streptomyces thermolilacinus
Classification: HYDROLASE
Source organism: Streptomyces thermolilacinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-03-26
Authors: Kumagai, Y., Yamashita, K., Okuyama, M., Hatanaka, T., Yao, M., Kimura, A.
PDB entry 3wsv: Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-unbound form
Classification: OXIDOREDUCTASE
Source organism: Enterococcus mundtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2014-03-27
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3wsw: Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-bound form
Classification: OXIDOREDUCTASE
Source organism: Enterococcus mundtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-03-27
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3wsx: SorLA Vps10p domain in ligand-free form
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2014-03-30
Authors: Kitago, Y., Nakata, Z., Nagae, M., Nogi, T., Takagi, J.
PDB entry 3wsy: SorLA Vps10p domain in complex with its own propeptide fragment
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2014-03-30
Authors: Kitago, Y., Nakata, Z., Nagae, M., Nogi, T., Takagi, J.
PDB entry 3wsz: SorLA Vps10p domain in complex with Abeta-derived peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.201 Å
Deposited: 2014-03-30
Authors: Kitago, Y., Nakata, Z., Nagae, M., Nogi, T., Takagi, J.
PDB entry 3wt0: Crystal Structure Analysis of Cell Division Protein
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-03-31
Authors: Kato, K., Ishido, T., Matsui, T., Yao, M.
PDB entry 3wt1: Crystal structure of the b'-a' domain of thermophilic fungal protein disulfide isomerase (reduced form)
Classification: ISOMERASE
Source organism: Humicola insolens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2014-04-02
Authors: Inagaki, K., Satoh, T., Itoh, S.G., Okumura, H., Kato, K.
PDB entry 3wt2: Crystal structure of the b'-a' domain of thermophilic fungal protein disulfide isomerase (oxidized form)
Classification: ISOMERASE
Source organism: Humicola insolens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2014-04-02
Authors: Inagaki, K., Satoh, T., Itoh, S.G., Okumura, H., Kato, K.
PDB entry 3wt3: New crystal form of a hyperthermophilic endocellulase
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2014-04-07
Authors: Kataoka, M., Ishikawa, K.
PDB entry 3wt4: Structural and kinetic bases for the metal preference of the M18 aminopeptidase from Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-04-07
Authors: Nguyen, D.D., Pandian, R., Kim, D.D., Ha, S.C., Yoon, H.J., Kim, K.S., Yun, K.H., Kim, J.H., Kim, K.K.
PDB entry 3wt5: A mixed population of antagonist and agonist binding conformers in a single crystal explains partial agonism against vitamin D receptor: Active vitamin D analogues with 22R-alkyl group
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-04-08
Authors: Anami, Y., Itoh, T., Yamamoto, K.
PDB entry 3wt6: A mixed population of antagonist and agonist binding conformers in a single crystal explains partial agonism against vitamin D receptor: Active vitamin D analogues with 22R-alkyl group
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-04-08
Authors: Anami, Y., Itoh, T., Yamamoto, K.
PDB entry 3wt7: Crystal structure of VDR-LBD complexed with 22R-Butyl-2-methylidene-26,27-dimethyl-19,24-dinor-1 ,25-dihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-04-08
Authors: Anami, Y., Itoh, T., Yamamoto, K.
PDB entry 3wtb: Crystal structure of Gox0525
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-04-09
Authors: Yuan, Y.A., Lin, J.P.
PDB entry 3wtc: Crystal structure of Gox2036
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2014-04-09
Authors: Yuan, Y.A., Lin, J.P.
PDB entry 3wtd: Structure of PAXX
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2014-04-09
Authors: Ochi, T., Blundell, T.L.
PDB entry 3wtf: Structure of PAXX
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.451 Å
Deposited: 2014-04-09
Authors: Ochi, T., Blundell, T.L.
PDB entry 3wtg: Crystal structure of Emu (dromaius novaehollandiae) hemoglobin at 2.3 angstrom resolution
Classification: OXYGEN TRANSPORT
Source organism: Dromaius novaehollandiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-04-11
Authors: Abubakkar, M.M., Maheshwaran, V., Ponnuswamy, M.N., Saraboji, K.
PDB entry 3wth: Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Imidacloprid
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2014-04-11
Authors: Okajima, T., Ihara, M., Yamashita, A., Oda, T., Matsuda, K.
PDB entry 3wti: Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Clothianidin
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2014-04-11
Authors: Okajima, T., Ihara, M., Yamashita, A., Oda, T., Matsuda, K.
PDB entry 3wtj: Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein Complexed with Thiacloprid
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2014-04-11
Authors: Okajima, T., Ihara, M., Yamashita, A., Oda, T., Matsuda, K.
PDB entry 3wtk: Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Thiacloprid
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2014-04-11
Authors: Okajima, T., Ihara, M., Yamashita, A., Oda, T., Matsuda, K.
PDB entry 3wtl: Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein Complexed with Nitromethylene Analogue of Imidacloprid
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-04-11
Authors: Okajima, T., Ihara, M., Yamashita, A., Oda, T., Matsuda, K.
PDB entry 3wtm: Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Nitromethylene Analogue of Imidacloprid
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2014-04-11
Authors: Okajima, T., Ihara, M., Yamashita, A., Oda, T., Matsuda, K.
PDB entry 3wtn: Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein Complexed with Desnitro-imidacloprid
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2014-04-11
Authors: Okajima, T., Ihara, M., Yamashita, A., Oda, T., Matsuda, K.
PDB entry 3wto: Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Q55R Mutant Complexed with Desnitro-imidacloprid
Classification: SIGNALING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2014-04-11
Authors: Okajima, T., Ihara, M., Yamashita, A., Oda, T., Matsuda, K.
PDB entry 3wtp: Crystal Structure of the heterotypic nucleosome containing human CENP-A and H3.3
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2014-04-14
Authors: Arimura, Y., Shirayama, K., Horikoshi, N., Fujita, R., Kagawa, W., Fukagawa, T., Almouzni, G., Kurumizaka, H.
PDB entry 3wtq: Crystal structure of VDR-LBD complexed with 22S-butyl-2-methylidene-19-nor-1a,25-dihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-04-15
Authors: Nakabayashi, M., Inaba, Y., Itoh, T., Anami, Y., Ikura, T., Ito, N., Yamamoto, K.
PDB entry 3wtr: Crystal structure of E. coli YfcM bound to Co(II)
Classification: TRANSLATION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2014-04-19
Authors: Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
PDB entry 3wts: Crystal structure of the complex comprised of ETS1, RUNX1, CBFBETA, and the tcralpha gene enhancer DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wtt: Crystal structure of the complex comprised of phosphorylated ETS1, RUNX1, CBFBETA, and the tcralpha gene enhancer DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wtu: Crystal structure of the complex comprised of ETS1 (V170A), RUNX1, CBFBETA, and the tcralpha gene enhancer DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wtv: Crystal structure of the complex comprised of ETS1(V170G), RUNX1, CBFBETA, and the tcralpha gene enhancer DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wtw: Crystal structure of the complex comprised of ETS1(K167A), RUNX1, CBFBETA, and the tcralpha gene enhancer DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wtx: Crystal structure of the complex comprised of ETS1(Y329A), RUNX1, CBFBETA, and the tcralpha gene enhancer DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wty: Crystal structure of the complex comprised of ETS1(G333P), RUNX1, CBFBETA, and the tcralpha gene enhancer DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wtz: Crystal structure of ETS-1 DNA binding and autoinhibitory domains (276-441)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wu0: Crystal structure of phosphorylated ETS-1 DNA binding and autoinhibitory domains (276-441)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-04-21
Authors: Shiina, M., Hamada, K., Ogata, K.
PDB entry 3wu1: Crystal structure of the ETS1-RUNX1-DNA ternary complex
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-04-21
Authors: Tahirov, T.H., Ogata, K.
PDB entry 3wu2: Crystal structure analysis of Photosystem II complex
Classification: ELECTRON TRANSPORT, PHOTOSYNTHESIS
Source organism: Thermosynechococcus vulcanus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-04-21
Authors: Umena, Y., Kawakami, K., Shen, J.R., Kamiya, N.
PDB entry 3wu3: Reduced-form structure of E.coli Lon Proteolytic domain
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2014-04-22
Authors: Nishii, W., Kukimoto-Niino, M., Terada, T., Shirouzu, M., Muramatsu, T., Yokoyama, S.
PDB entry 3wu4: Oxidized-form structure of E.coli Lon Proteolytic domain
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-04-22
Authors: Nishii, W., Kukimoto-Niino, M., Terada, T., Shirouzu, M., Muramatsu, T., Yokoyama, S.
PDB entry 3wu5: Reduced E.coli Lon Proteolytic domain
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2014-04-22
Authors: Nishii, W., Kukimoto-Niino, M., Terada, T., Shirouzu, M., Muramatsu, T., Yokoyama, S.
PDB entry 3wu6: Oxidized E.coli Lon Proteolytic domain
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-04-22
Authors: Nishii, W., Kukimoto-Niino, M., Terada, T., Shirouzu, M., Muramatsu, T., Yokoyama, S.
PDB entry 3wu7: Spatiotemporal development of soaked protein crystal; derivative 250 sec
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-04-23
Authors: Mizutani, R., Saiga, R.
PDB entry 3wu8: Spatiotemporal development of soaked protein crystal; derivative 1080 sec
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-04-23
Authors: Mizutani, R., Saiga, R.
PDB entry 3wu9: Spatiotemporal development of soaked protein crystal; derivative 1580 sec
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-04-23
Authors: Mizutani, R., Saiga, R.
PDB entry 3wua: Spatiotemporal development of soaked protein crystal; derivative 3610 sec
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-04-23
Authors: Mizutani, R., Saiga, R.
PDB entry 3wub: The wild type crystal structure of b-1,4-Xylanase (XynAS9) from Streptomyces sp. 9
Classification: HYDROLASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2014-04-23
Authors: Chen, C.C., Han, X., Lv, P., Ko, T.P., Peng, W., Huang, C.H., Zheng, Y., Gao, J., Yang, Y.Y., Guo, R.T.
PDB entry 3wuc: X-ray crystal structure of Xenopus laevis galectin-Va
Classification: SUGAR BINDING PROTEIN
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-04-23
Authors: Nonaka, Y., Yoshida, H., Kamitori, S., Nakamura, T.
PDB entry 3wud: X-ray crystal structure of Xenopus laevis galectin-Ib
Classification: SUGAR BINDING PROTEIN
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2014-04-23
Authors: Nonaka, Y., Yoshida, H., Kamitori, S., Nakamura, T.
PDB entry 3wue: The wild type crystal structure of b-1,4-Xylanase (XynAS9) with xylobiose from Streptomyces sp. 9
Classification: HYDROLASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-04-23
Authors: Chen, C.C., Han, X., Lv, P., Ko, T.P., Peng, W., Huang, C.H., Zheng, Y., Gao, J., Yang, Y., Guo, R.T.
PDB entry 3wuf: The mutant crystal structure of b-1,4-Xylanase (XynAS9_V43P/G44E) from Streptomyces sp. 9
Classification: HYDROLASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2014-04-23
Authors: Chen, C.C., Han, X., Lv, P., Ko, T.P., Peng, W., Huang, C.H., Zheng, Y., Gao, J., Yang, Y.Y., Guo, R.T.
PDB entry 3wug: The mutant crystal structure of b-1,4-Xylanase (XynAS9_V43P/G44E) with xylobiose from Streptomyces sp. 9
Classification: HYDROLASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2014-04-23
Authors: Chen, C.C., Han, X., Lv, P., Ko, T.P., Peng, W., Huang, C.H., Zheng, Y., Gao, J., Yang, Y.Y., Guo, R.T.
PDB entry 3wuh: Qri7 and AMP complex
Classification: METAL BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.937 Å
Deposited: 2014-04-24
Authors: Tominaga, T., Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
PDB entry 3wui: Dimeric horse cytochrome c formed by refolding from molten globule state
Classification: ELECTRON TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-04-25
Authors: Deshpande, M.S., Parui, P.P., Kamikubo, H., Yamanaka, M., Nagao, S., Komori, H., Kataoka, M., Higuchi, Y., Hirota, S.
PDB entry 3wul: Crystal structure of hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-04-28
Authors: Sugahara, M., Nango, E., Suzuki, M.
PDB entry 3wum: Crystal structure of hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-04-28
Authors: Sugahara, M., Nango, E., Suzuki, M.
PDB entry 3wun: Crystal structure of hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-04-28
Authors: Sugahara, M., Nango, E., Suzuki, M.
PDB entry 3wup: Crystal Structure of the Ubiquitin-Binding Zinc Finger (UBZ) Domain of the Human DNA Polymerase Eta
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-01
Authors: Suzuki, N., Wakatsuki, S., Kawasaki, S.
PDB entry 3wuq: Structure of the entire stalk region of the dynein motor domain
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2014-05-01
Authors: Nishikawa, Y., Oyama, T., Kamiya, N., Kon, T., Toyoshima, Y.Y., Nakamura, H., Kurisu, G.
PDB entry 3wur: Structure of DMP19 Complex with 18-crown-6
Classification: GENE REGULATION
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2014-05-02
Authors: Lee, C.C., Wang, H.C., Wang, A.H.J.
PDB entry 3wus: Crystal Structure of the Vif-Binding Domain of Human APOBEC3F
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2014-05-02
Authors: Nakashima, M., Kawamura, T., Ode, H., Watanabe, N., Iwatani, Y.
PDB entry 3wut: Structure basis of inactivating cell abscission
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2014-05-05
Authors: Kim, H.J., Matsuura, A., Lee, H.H.
PDB entry 3wuu: Structure basis of inactivating cell abscission with chimera peptide 1
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.904 Å
Deposited: 2014-05-05
Authors: Kim, H.J., Matsuura, A., Lee, H.H.
PDB entry 3wuv: Structure basis of inactivating cell abscission with chimera peptide 2
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2014-05-05
Authors: Kim, H.J., Matsuura, A., Lee, H.H.
PDB entry 3wuw: KIR3DL1 in complex with HLA-B*57:01.I80T
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-06
Authors: Vivian, J.P., Rossjohn, J.
PDB entry 3wux: Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
Classification: HYDROLASE
Source organism: Streptococcus agalactiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.792 Å
Deposited: 2014-05-08
Authors: Nakamichi, Y., Oiki, S., Mikami, B., Murata, K., Hashimoto, W.
PDB entry 3wuy: Crystal structure of Nit6803
Classification: HYDROLASE
Source organism: Synechocystis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2014-05-09
Authors: Yuan, Y.A., Yin, B., Wang, C.
PDB entry 3wuz: Crystal structure of the Ig V-set domain of human paired immunoglobulin-like type 2 receptor alpha
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2014-05-10
Authors: Kuroki, K., Wang, J., Ose, T., Yamaguchi, M., Tabata, S., Maita, N., Nakamura, S., Kajikawa, M., Kogure, A., Satoh, T., Arase, H., Maenaka, K.
PDB entry 3wv0: O-glycan attached to herpes simplex virus type 1 glycoprotein gB is recognized by the Ig V-set domain of human paired immunoglobulin-like type 2 receptor alpha
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-05-10
Authors: Kuroki, K., Wang, J., Ose, T., Yamaguchi, M., Tabata, S., Maita, N., Nakamura, S., Kajikawa, M., Kogure, A., Satoh, T., Arase, H., Maenaka, K.
PDB entry 3wv1: Crystal structure of the catalytic domain of MMP-13 complexed with 4-(2-((6-fluoro-2-((3-methoxybenzyl)carbamoyl)-4-oxo-3,4-dihydroquinazolin-5-yl)oxy)ethyl)benzoic acid
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2014-05-12
Authors: Oki, H., Tanaka, Y.
PDB entry 3wv2: Crystal structure of the catalytic domain of MMP-13 complexed with N-(3-methoxybenzyl)-4-oxo-3,4-dihydroquinazoline-2-carboxamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-05-12
Authors: Oki, H., Tanaka, Y.
PDB entry 3wv3: Crystal structure of the catalytic domain of MMP-13 complexed with N-(3-methoxybenzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-2-carboxamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-12
Authors: Oki, H., Tanaka, Y.
PDB entry 3wv4: Crystal structure of VinN
Classification: LIGASE
Source organism: Streptomyces halstedii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-05-15
Authors: Miyanaga, A., Cieslak, J., Shinohara, Y., Kudo, F., Eguchi, T.