LiteFold/PDB huggingface dataset:
PDB entry 7ytt: Crystal structure of vaccinia virus G3/L5 sub-complex (SeMet-labeled, P21 space group)
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-08-16
Authors: Lin, S., Yue, D., Lu, G.W.
PDB entry 7ytu: Crystal structure of vaccinia virus G3/L5 sub-complex (SeMet-labeled, P31 space group)
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.504 Å
Deposited: 2022-08-16
Authors: Lin, S., Yue, D., Lu, G.W.
PDB entry 7ytv: Crystal structure of Aspergillus fumigatus Thioredoxin reductase in complex with auranofin
Classification: OXIDOREDUCTASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.866 Å
Deposited: 2022-08-16
Authors: Lin, W.
PDB entry 7ytw: Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-16
Authors: She, J., Wang, M., He, J., Zhang, K., Li, S.
PDB entry 7ytx: Crystal structure of TLR8 in complex with its antagonist
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-08-16
Authors: Shimizu, T., Sakaniwa, K.
PDB entry 7yty: Mouse SVCT1 in an apo state
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-16
Authors: She, J., Wang, M., He, J., Zhang, K., Li, S.
PDB entry 7yu0: Structure of 6-aminohexanoate-oligomer hydrolase NylC precursor, H130Y/N266A/T267A mutant
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-08-16
Authors: Negoro, S., Higuchi, Y.
PDB entry 7yu1: Structure of 6-aminohexanoate-oligomer hydrolase NylC precursor, D122G/H130Y/T267C mutant
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2022-08-16
Authors: Negoro, S., Higuchi, Y.
PDB entry 7yu2: Structure of 6-aminohexanoate-oligomer hydrolase NylC, D122G/H130Y/T267C mutant, hydroxylamine-treated
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2022-08-16
Authors: Negoro, S., Higuchi, Y.
PDB entry 7yu3: Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-16
Authors: Akasaka, H., Shihoya, W., Nureki, O.
PDB entry 7yu4: Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556, focused on receptor
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-08-16
Authors: Akasaka, H., Shihoya, W., Nureki, O.
PDB entry 7yu5: Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556, state1
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-08-16
Authors: Akasaka, H., Shihoya, W., Nureki, O.
PDB entry 7yu6: Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556, state2
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-08-16
Authors: Akasaka, H., Shihoya, W., Nureki, O.
PDB entry 7yu7: Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556, state3
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-08-16
Authors: Akasaka, H., Shihoya, W., Nureki, O.
PDB entry 7yu8: Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556, state4
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2022-08-16
Authors: Akasaka, H., Shihoya, W., Nureki, O.
PDB entry 7yua: Structural Insight into a Metal-Dependent Mutase MtdL Revealing an Arginine Residue Covalently Mediated Interconversion between Nucleotide-Based furanose and pyranose
Classification: BIOSYNTHETIC PROTEIN
Source organism: Marinactinospora thermotolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-16
Authors: Chi, C.B., Ma, M.
PDB entry 7yub: S1P-bound human SPNS2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2022-08-17
Authors: He, Y., Duan, Y.
PDB entry 7yud: FTY720p-bound human SPNS2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2022-08-17
Authors: He, Y., Duan, Y.
PDB entry 7yue: Epitope-directed anti-SARS CoV 2 scFv engineered against the key spike protein region.
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-08-17
Authors: Kumar, U., Jaiswal, D., Gaur, V., Salunke, D.M.
PDB entry 7yuf: apo human SPNS2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2022-08-17
Authors: He, Y., Duan, Y.
PDB entry 7yug: Structure of human BANP BEN domain
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-08-17
Authors: Zhang, J., Xiao, Y.Q., Chen, Y.X., Liu, K., Min, J.R.
PDB entry 7yuh: MtaLon-Apo for the spiral oligomers of trimer
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-08-17
Authors: Li, S., Hsieh, K., Kuo, C., Lee, S., Ho, M., Wang, C., Zhang, K., Chang, C.I.
PDB entry 7yui: Crystal structure of HOIL-1L(195-423) in complex with the linear tetra-ubiquitin
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.599 Å
Deposited: 2022-08-17
Authors: Xiao, L., Pan, L.
PDB entry 7yuj: Crystal structure of HOIL-1L(365-510)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.865 Å
Deposited: 2022-08-17
Authors: Xiao, L., Pan, L.
PDB entry 7yuk: Complex structure of BANP BEN domain bound to DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2022-08-17
Authors: Zhang, J., Xiao, Y.Q., Chen, Y.X., Liu, K., Min, J.R.
PDB entry 7yul: Crystal structure of human BEND6 BEN domain in complex with DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-08-17
Authors: Liu, K., Xiao, Y.Q., Zhang, J., Min, J.R.
PDB entry 7yum: MtaLon-Apo for the spiral oligomers of tetramer
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-17
Authors: Li, S., Hsieh, K., Kuo, C., Lee, S., Ho, M., Wang, C., Zhang, K., Chang, C.I.
PDB entry 7yun: Crystal structure of human BEND6 BEN domain in complex with methylated DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2022-08-17
Authors: Liu, K., Xiao, Y.Q., Zhang, J., Min, J.R.
PDB entry 7yup: MtaLon-Apo for the spiral oligomers of pentamer
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-08-17
Authors: Li, S., Hsieh, K., Kuo, C., Lee, S., Ho, M., Wang, C., Zhang, K., Chang, C.I.
PDB entry 7yut: MtaLon-Apo for the spiral oligomers of hexamer
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-08-17
Authors: Li, S., Hsieh, K., Kuo, C., Lee, S., Ho, M., Wang, C., Zhang, K., Chang, C.I.
PDB entry 7yuu: MtaLon-ADP for the spiral oligomers of trimer
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2022-08-17
Authors: Li, S., Hsieh, K., Kuo, C., Lee, S., Ho, M., Wang, C., Zhang, K., Chang, C.I.
PDB entry 7yuv: MtaLon-ADP for the spiral oligomers of tetramer
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-17
Authors: Li, S., Hsieh, K., Kuo, C., Lee, S., Ho, M., Wang, C., Zhang, K., Chang, C.I.
PDB entry 7yuw: MtaLon-ADP for the spiral oligomers of pentamer
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-18
Authors: Li, S., Hsieh, K., Kuo, C., Lee, S., Ho, M., Wang, C., Zhang, K., Chang, C.I.
PDB entry 7yux: MtaLon-ADP for the spiral oligomers of hexamer
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-18
Authors: Li, S., Hsieh, K., Kuo, C., Lee, S., Ho, M., Wang, C., Zhang, K., Chang, C.I.
PDB entry 7yuy: Structure of a mutated membrane-bound glycosyltransferase
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-18
Authors: Hu, X.L., Yang, P., Zhang, M., Liu, X.T., Yu, H.J.
PDB entry 7yuz: Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP8784
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.878 Å
Deposited: 2022-08-18
Authors: Irie, M., Fukami, T.A., Tanada, M., Ohta, A., Torizawa, T.
PDB entry 7yv0: Structural Insight into a Metal-Dependent Mutase MtdL Revealing an Arginine Residue Covalently Mediated Interconversion between Nucleotide-Based furanose and pyranose
Classification: BIOSYNTHETIC PROTEIN
Source organism: Marinactinospora thermotolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2022-08-18
Authors: Chi, C.B., Ma, M.
PDB entry 7yv1: Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor LUNA18 and KA30L Fab
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.454 Å
Deposited: 2022-08-18
Authors: Irie, M., Fukami, T.A., Matsuo, A., Saka, K., Nishimura, M., Saito, H., Torizawa, T., Tanada, M., Ohta, A.
PDB entry 7yv2: Cryo-EM structure of expanded coxsackievirus A16 empty particle after incubation with 8C4 antibody
Classification: STRUCTURAL PROTEIN
Source organism: Coxsackievirus A16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-08-18
Authors: Cong, Y., Liu, C.X.
PDB entry 7yv3: genetically encoded pH sensor Lime at pH10
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-18
Authors: Wen, Y., Shen, Y., Campbell, R., Lemieux, M.J.
PDB entry 7yv4: Crystal structure of human UCHL3 in complex with Farrerol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-08-18
Authors: Mao, Z.Y., Xu, X.J., Zhang, W.T.
PDB entry 7yv5: genetically encoded pH sensor Lime at pH6
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-08-18
Authors: Wen, Y., Shen, Y., Campbell, R., Lemieux, M.J.
PDB entry 7yv7: Cryo-EM structure of expanded coxsackievirus A16 empty particle in complex with antibody 9B5
Classification: STRUCTURAL PROTEIN
Source organism: Coxsackievirus A16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-18
Authors: Cong, Y., Liu, C.X.
PDB entry 7yv8: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with golden hamster ACE2 (local refinement)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Mesocricetus auratus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2022-08-18
Authors: Zhao, Z.N., Xie, Y.F., Chai, Y., Qi, J.X., Gao, G.F.
PDB entry 7yv9: Cryo-EM structure of full-length Myosin Va in the autoinhibited state
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.78 Å
Deposited: 2022-08-19
Authors: Niu, F., Wei, Z.
PDB entry 7yva: Crystal structure of Candida albicans Fructose-1,6-bisphosphate aldolase complexed with lipoic acid
Classification: CYTOSOLIC PROTEIN/INHIBITOR
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2022-08-19
Authors: Cao, H., Huang, Y., Ren, Y., Wan, J.
PDB entry 7yvb: Aplysia californica FaNaC in ligand bound state
Classification: TRANSPORT PROTEIN
Source organism: Aplysia californica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-08-19
Authors: Chen, Q.F., Liu, F.L., Dang, Y., Feng, H., Zhang, Z., Ye, S.
PDB entry 7yvc: Aplysia californica FaNaC in apo state
Classification: TRANSPORT PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-08-19
Authors: Chen, Q.F., Liu, F.L., Dang, Y., Feng, H., Zhang, Z., Ye, S.
PDB entry 7yvd: The crystal structure of the progerin C-terminal peptide and the Ig-like domain of lamin A/C
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-19
Authors: Ahn, J., Ha, N.C.
PDB entry 7yve: Omicron BA.4/5 SARS-CoV-2 S in complex with TH027 Fab
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvf: Omicron BA.4/5 SARS-CoV-2 S RBD in complex with TH027 Fab
Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvg: Omicron BA.4/5 SARS-CoV-2 S in complex with TH132 Fab
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvh: Omicron BA.4/5 SARS-CoV-2 S RBD in complex with TH132 Fab
Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvi: Omicron BA.4/5 SARS-CoV-2 S in complex with TH236 Fab
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvj: Omicron BA.4/5 SARS-CoV-2 S RBD in complex with TH236 Fab
Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvk: Omicron BA.4/5 SARS-CoV-2 S in complex with TH272 Fab
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvl: Omicron BA.4/5 SARS-CoV-2 S RBD in complex with TH272 Fab
Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvm: Omicron BA.4/5 SARS-CoV-2 S RBD in complex with TH272 Fab
Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvn: Omicron BA.4/5 SARS-CoV-2 S in complex with TH281 Fab
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvo: Omicron BA.4/5 SARS-CoV-2 S in complex with TH027/132 Fab
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvp: Omicron BA.4/5 SARS-CoV-2 S in complex with TH272/281 Fab
Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-19
Authors: Guo, Y., Zhang, G., Liang, J., Liu, F., Rao, Z.
PDB entry 7yvq: Complex structure of Clostridioides difficile binary toxin folded CDTa-bound CDTb-pore (short).
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-08-19
Authors: Yamada, T., Kawamoto, A., Yoshida, T., Sato, Y., Kato, T., Tsuge, H.
PDB entry 7yvr: Crystal Structure of L-Threonine Aldolase from Neptunomonas marina
Classification: LYASE
Source organism: Neptunomonas marina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-08-19
Authors: He, Y.Z., Wang, J., Yan, W.P., Zhang, Y., Feng, Y.
PDB entry 7yvs: Complex structure of Clostridioides difficile binary toxin unfolded CDTa-bound CDTb-pore (short).
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-08-19
Authors: Yamada, T., Kawamoto, A., Yoshida, T., Sato, Y., Kato, T., Tsuge, H.
PDB entry 7yvt: S-formylglutathione hydrolase from Variovorax sp. PAMC 28711
Classification: HYDROLASE
Source organism: Variovorax sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-08-19
Authors: Hwang, J., Do, H., Lee, J.H.
PDB entry 7yvu: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with mouse ACE2 (local refinement)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-19
Authors: Zhao, Z.N., Xie, Y.F., Chai, Y., Qi, J.X., Gao, G.F.
PDB entry 7yvv: AcmP1, R-4-hydroxymandelate synthase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Amycolatopsis sp. Hca4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-19
Authors: Zhang, B., Ge, H.M.
PDB entry 7yvw: NMR determination of the 2:1 binding motif structure involving cytosine flipping out for the recognition of the CGG/CGG triad DNA
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-08-19
Authors: Furuita, K., Yamada, T., Sakurabayashi, S., Nomura, M., Kojima, C., Nakatani, K.
PDB entry 7yvx: Left-handed DNA duplex containing consecutive G-G base pairs
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2022-08-19
Authors: Kondo, J.
PDB entry 7yvy: Crystal structure of thiolase PFC_04095 from Pyrococcus furiosus
Classification: TRANSFERASE
Source organism: Pyrococcus furiosus COM1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-08-20
Authors: Singh, R., Das, A.K.
PDB entry 7yvz: Structure of Caenorhabditis elegans CISD-1/mitoNEET
Classification: METAL BINDING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-08-20
Authors: Hasegawa, K., Hagiuda, E., Taguchi, A.T., Geldenhuys, W., Iwasaki, T., Kumasaka, T.
PDB entry 7yw0: Bacteroides fragilis Hcp5
Classification: STRUCTURAL PROTEIN
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-08-20
Authors: Wen, Y., He, W., Bai, Y.
PDB entry 7yw1: crystal structure of UBE2O
Classification: CYTOSOLIC PROTEIN
Source organism: Trametes pubescens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.27 Å
Deposited: 2022-08-20
Authors: Fu, Z., Zhu, W., Huang, H.
PDB entry 7yw2: Crystal structure of tRNA 2'-phosphotransferase from Mus musculus
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2022-08-21
Authors: Yang, X.Y., Liu, X.H.
PDB entry 7yw3: Crystal structure of tRNA 2'-phosphotransferase from Homo sapiens
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-21
Authors: Yang, X.Y., Liu, X.H.
PDB entry 7yw4: Crystal structure of tRNA 2'-phosphotransferase from Saccharomyces cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2022-08-21
Authors: Yang, X.Y., Liu, X.H.
PDB entry 7yw5: Crystal Structure of the ITS1 processing by human ribonuclease ISG20L2 with mutation D327A
Classification: RIBOSOMAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2022-08-21
Authors: Yang, X.Y., Liu, X.H.
PDB entry 7yw7: Crystal structure of zika virus E protein
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-08-21
Authors: Wang, X.X., Yang, Y.X.
PDB entry 7yw8: Crystal structure of zika E protein
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-21
Authors: Wang, X.X., Yang, Y.X.
PDB entry 7yw9: Crystal structure of the triple mutant CmnC-L136Q,S138G,D249Y in complex with alpha-KG
Classification: OXIDOREDUCTASE
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2022-08-22
Authors: Huang, S.J., Hsiao, Y.H., Lin, E.C., Hsiao, P.Y., Chang, C.Y.
PDB entry 7ywa: Structure of DinI in complex with RecA filament
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2022-08-22
Authors: Gao, B., Feng, Y.
PDB entry 7ywb: Crystal structure of YTHDF2 in complex with N6-Methyladenine
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-02-12
Authors: Nai, F., Li, Y., Caflisch, A.
PDB entry 7ywc: Enzyme of biosynthetic pathway
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.917 Å
Deposited: 2022-02-12
Authors: Archna, A., Breithaupt, C., Stubbs, M.T.
PDB entry 7ywd: Human GDAP1 core domain, trigonal crystal form
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-02-13
Authors: Raasakka, A., Kursula, P.
PDB entry 7ywe: Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain (crystal form 2)
Classification: PLANT PROTEIN
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-02-13
Authors: Huwa, N., Classen, T., Weiergraeber, O.H.
PDB entry 7ywf: Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain with bound galactobiose
Classification: PLANT PROTEIN
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-02-13
Authors: Huwa, N., Classen, T., Weiergraeber, O.H.
PDB entry 7ywg: Monocot chimeric jacalin JAC1 from Oryza sativa: lectin domain (crystal form 1)
Classification: PLANT PROTEIN
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-02-14
Authors: Huwa, N., Classen, T., Weiergraeber, O.H.
PDB entry 7ywh: Six DNA Helix Bundle nanopore - State 1
Classification: DNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2022-02-14
Authors: Javed, A., Ahmad, K., Lanphere, C., Coveney, P., Howorka, S., Orlova, E.V.
PDB entry 7ywi: Six DNA duplex bundle nanopore - State 2
Classification: DNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2022-02-14
Authors: Javed, A., Ahmad, K., Lanphere, C., Coveney, P., Howorka, S., Orlova, E.V.
PDB entry 7ywj: Crystal structure of an engineered TycA variant, TycA pPLA (L313P)
Classification: LIGASE
Source organism: Brevibacillus parabrevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.749 Å
Deposited: 2022-02-14
Authors: Mittl, P., Camus, A., Truong, G., Markert, G., Hilvert, D.
PDB entry 7ywk: Crystal structure of an engineered TycA variant, TycApPLA, in complex with AMP
Classification: LIGASE
Source organism: Brevibacillus parabrevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-02-14
Authors: Mittl, P., Camus, A., Truong, G., Markert, G., Hilvert, D.
PDB entry 7ywl: Six DNA Helix Bundle nanopore - State 3
Classification: DNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2022-02-14
Authors: Javed, A., Ahmad, K., Lanphere, C., Coveney, P., Howorka, S., Orlova, E.V.
PDB entry 7ywm: Crystal structure of Mycobacterium abcessus Phosphopantetheine adenylyltransferase in complex with ATP
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.624 Å
Deposited: 2022-02-14
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7ywn: Six DNA Helix Bundle nanopore - State 4
Classification: DNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2022-02-14
Authors: Javed, A., Ahmad, K., Lanphere, C., Orlova, E.V., Coveney, P., Howorka, S.
PDB entry 7ywo: Six DNA Helix Bundle nanopore - State 5
Classification: DNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2022-02-14
Authors: Javed, A., Ahmad, K., Lanphere, C., Coveney, P., Howorka, S., Orlova, E.V.
PDB entry 7ywp: Closed conformation of Oligopeptidase B from Serratia proteomaculans with covalently bound TCK
Classification: HYDROLASE
Source organism: Serratia proteamaculans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-02-14
Authors: Petrenko, D.E., Boyko, K.M., Nikolaeva, A.Y., Vlaskina, A.V., Mikhailova, A.G., Timofeev, V.I., Rakitina, T.V.
PDB entry 7ywq: Solution structure of homodimeric Capsid protein (residues 17-95) of Tick-borne encephalitis virus (d16-TBEVC)
Classification: VIRAL PROTEIN
Source organism: Tick-borne encephalitis virus
Experimental method: SOLUTION NMR
Deposited: 2022-02-14
Authors: Novotny, R.
PDB entry 7ywr: NMR structure of the N-terminal domain of Nsp8 from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: SOLUTION NMR
Deposited: 2022-02-14
Authors: Mompean, M., Laurents, D.V., Pantoja-Uceda, D., Trevino, M.A.
PDB entry 7yws: Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 3 spermine molecules at 1.7 A resolution
Classification: HYDROLASE
Source organism: Serratia proteamaculans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-02-14
Authors: Petrenko, D.E., Boyko, K.M., Nikolaeva, A.Y., Vlaskina, A.V., Mikhailova, A.G., Timofeev, V.I., Rakitina, T.V.
PDB entry 7ywt: human Carbonic Anhydrase II in complex with 4-oxo-N-(4-sulfamoylphenyl)-1,3,4,6,7,11b-hexahydro-2H-pyrazino[2,1-a]isoquinoline-2-carboxamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.106 Å
Deposited: 2022-02-14
Authors: Angeli, A., Ferraroni, M.
PDB entry 7ywu: Eugenol oxidase from rhodococcus jostii: mutant S81H, A423M, H434Y, S394V, I445D, S518P
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus jostii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-02-14
Authors: Alvigini, L., Mattevi, A.
PDB entry 7ywv: Eugenol oxidase from rhodococcus jostii: mutant S81H, D151E, A423M, H434Y, S394V, Q425S, I445D, S518P
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus jostii RHA1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-02-14
Authors: Alvigini, L., Mattevi, A.
PDB entry 7yww: Monocot chimeric jacalin JAC1 from Oryza sativa: lectin domain (crystal form 2)
Classification: PLANT PROTEIN
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-02-14
Authors: Huwa, N., Classen, T., Weiergraeber, O.H.
PDB entry 7ywx: Structure of the human CCAN CENP-A alpha-satellite complex
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2022-02-14
Authors: Yatskevich, S., Muir, K.W., Bellini, D., Zhang, Z., Yang, J., Tischer, T., Predin, M., Dendooven, T., McLaughlin, S.H., Barford, D.
PDB entry 7ywy: Structure of the GroEL chaperonin in complex with the CnoX chaperedoxin
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-02-15
Authors: Van der Verren, S.E., Remaut, H., Collet, J.F., Dupuy, E.
PDB entry 7ywz: Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 4 spermine molecules at 1.75 A resolution
Classification: HYDROLASE
Source organism: Serratia proteamaculans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-02-15
Authors: Petrenko, D.E., Boyko, K.M., Nikolaeva, A.Y., Vlaskina, A.V., Mikhailova, A.G., Timofeev, V.I., Rakitina, T.V.
PDB entry 7yx0: Crystal structure of the full-length short LOV protein SBW25-LOV from Pseudomonas fluorescens (light state)
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-02-15
Authors: Arinkin, V., Batra-Safferling, R., Granzin, J.
PDB entry 7yx1: Sandercyanin fluorescent protein - Y142A variant bound to BV
Classification: FLUORESCENT PROTEIN
Source organism: Sander
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-02-15
Authors: Subramanian, R., Ghosh, S., Yadav, K.
PDB entry 7yx3: Structure of the Mimivirus genomic fibre in its compact 6-start helix form
Classification: VIRAL PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-02-15
Authors: Villalta, A., Schmitt, A., Estrozi, L.F., Quemin, E.R.J., Alempic, J.M., Lartigue, A., Prazak, V., Belmudes, L., Vasishtan, D., Colmant, A.M.G., Honore, F.A., Coute, Y., Grunewald, K., Abergel, C.
PDB entry 7yx4: Structure of the Mimivirus genomic fibre in its compact 5-start helix form
Classification: VIRAL PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-02-15
Authors: Villalta, A., Schmitt, A., Estrozi, L.F., Quemin, E.R.J., Alempic, J.M., Lartigue, A., Prazak, V., Belmudes, L., Vasishtan, D., Colmant, A.M.G., Honore, F.A., Coute, Y., Grunewald, K., Abergel, C.
PDB entry 7yx5: Structure of the Mimivirus genomic fibre in its relaxed 5-start helix form
Classification: VIRAL PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-02-15
Authors: Villalta, A., Schmitt, A., Estrozi, L.F., Quemin, E.R.J., Alempic, J.M., Lartigue, A., Prazak, V., Belmudes, L., Vasishtan, D., Colmant, A.M.G., Honore, F.A., Coute, Y., Grunewald, K., Abergel, C.
PDB entry 7yx6: Crystal structure of YTHDF2 with compound YLI_DF_027
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-02-15
Authors: Nai, F., Li, Y., Caflisch, A.
PDB entry 7yx7: Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 1 spermine molecule at 1.72 A resolution
Classification: HYDROLASE
Source organism: Serratia proteamaculans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-02-15
Authors: Petrenko, D.E., Boyko, K.M., Nikolaeva, A.Y., Vlaskina, A.V., Mikhailova, A.G., Timofeev, V.I., Rakitina, T.V.
PDB entry 7yx8: Crystal structure of the AM0627 (E326A) inactive mutant in complex with PSGL-1-like bis-T glycopeptide and Zn2+
Classification: HYDROLASE
Source organism: Akkermansia muciniphila; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-02-15
Authors: Taleb, V., Liao, Q., Narimatsu, Y., Garcia-Garcia, A., Companon, I., Borges, R.J., Gonzalez-Ramirez, A.M., Corzana, F., Clausen, H., Rovira, C., Hurtado-Guerrero, R.
PDB entry 7yx9: MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2022-02-15
Authors: Roske, Y., Abualrous, E.T.
PDB entry 7yxa: XFEL crystal structure of the human sphingosine 1 phosphate receptor 5 in complex with ONO-5430608
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-02-15
Authors: Lyapina, E., Marin, E., Gusach, A., Orekhov, P., Gerasimov, A., Luginina, A., Vakhrameev, D., Ergasheva, M., Kovaleva, M., Khusainov, G., Khorn, P., Shevtsov, M., Kovalev, K., Okhrimenko, I., Bukhdruker, S., Popov, P., Hu, H., Weierstall, U., Liu, W., Cho, Y., Gushchin, I., Rogachev, A., Bourenkov, G., Park, S., Park, G., Huyn, H.J., Park, J., Gordeliy, V., Borshchevskiy, V., Mishin, A., Cherezov, V.
PDB entry 7yxb: MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.095 Å
Deposited: 2022-02-15
Authors: Roske, Y., Abualrous, E.T., Freund, C.
PDB entry 7yxc: Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-02-15
Authors: Jimenez-Panizo, A., Estebanez-Perpina, E., Fuentes-Prior, P.
PDB entry 7yxd: Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-02-15
Authors: Jimenez-Panizo, A., Estebanez-Perpina, E., Fuentes-Prior, P.
PDB entry 7yxe: Crystal structure of YTHDF2 with compound ZA_143
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-02-15
Authors: Nai, F., Zalesak, F., Li, Y., Caflisch, A.
PDB entry 7yxf: Crystal structure of CYP125 from Mycobacterium tuberculosis in complex with an inhibitor
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-02-16
Authors: Snee, M., Katariya, M., Levy, C., Leys, D.
PDB entry 7yxg: Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and 2OG
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.641 Å
Deposited: 2022-02-16
Authors: Chowdhury, R., Schofield, C.J.
PDB entry 7yxh: Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and succinate
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-02-16
Authors: Chowdhury, R., Schofield, C.J.
PDB entry 7yxi: Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and N-oxalylglycine (NOG)
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-02-16
Authors: Chowdhury, R., Schofield, C.J.
PDB entry 7yxj: Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and 2,4-PDCA
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-02-16
Authors: Chowdhury, R., Schofield, C.J.
PDB entry 7yxk: Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and N-oxalyl-D-alanine (NODA)
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2022-02-16
Authors: Chowdhury, R., Schofield, C.J.
PDB entry 7yxl: Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and N-oxalyl-D-phenylalanine (NOFD)
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-02-16
Authors: Chowdhury, R., Schofield, C.J.
PDB entry 7yxm: Benzoylsuccinyl-CoA thiolase with coenzyme A
Classification: TRANSFERASE
Source organism: Geobacter metallireducens GS-15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-02-16
Authors: Ermler, U., Heider, J., Weidenweber, S.
PDB entry 7yxn: Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment
Classification: NUCLEAR PROTEIN
Source organism: unidentified; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2022-02-16
Authors: Jimenez-Panizo, A., Estebanez-Perpina, E., Fuentes-Prior, P.
PDB entry 7yxo: Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment
Classification: NUCLEAR PROTEIN
Source organism: unidentified; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2022-02-16
Authors: Jimenez-Panizo, A., Estebanez-Perpina, E., Fuentes-Prior, P.
PDB entry 7yxp: Crystal structure of WT AncGR2-LBD WT bound to dexamethasone and SHP coregulator fragment
Classification: NUCLEAR PROTEIN
Source organism: unidentified; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2022-02-16
Authors: Jimenez-Panizo, A., Estebanez-Perpina, E., Fuentes-Prior, P.
PDB entry 7yxr: Crystal structure of mutant AncGR2-LBD (Y545A) bound to dexamethasone and SHP coregulator fragment
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-02-16
Authors: Jimenez-Panizo, A., Estebanez-Perpina, E., Fuentes-Prior, P.
PDB entry 7yxt: Crystal structure of human Indoleamine-2,3-dioxygenase 1 (hIDO1) with different conformations for G261-G265 fragment
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2022-02-16
Authors: Mirgaux, M., Wouters, J.
PDB entry 7yxu: Crystal structure of agonistic antibody 1618 fab domain bound to human 4-1BB.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2022-02-16
Authors: Hakansson, M., Rose, N., Petersson, J., Enell Smith, K., Thorolfsson, M., von Schantz, L.
PDB entry 7yxv: Crystal structure of a tautomerase superfamily member form Acinetobacter baumanii
Classification: CYTOSOLIC PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-02-16
Authors: Pankov, G., Hunter, W.N.
PDB entry 7yxw: Structure of the p22phox A200G mutant in complex with p47phox peptide
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-02-16
Authors: Cukier, C.D., Vuillard, L.M., Komjati, B., Szlavik, Z.
PDB entry 7yxx: Cryo-EM structure of USP9X
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-02-16
Authors: Deme, J.C., Halabelian, L., Arrowsmith, C.H., Lea, S.M., Structural Genomics Consortium (SGC)
PDB entry 7yxy: Cryo-EM structure of USP9X, local refinement of monomer
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-02-16
Authors: Deme, J.C., Halabelian, L., Arrowsmith, C.H., Lea, S.M., Structural Genomics Consortium (SGC)
PDB entry 7yxz: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Coenzyme A
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.779 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy0: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with 4'-phosphopantetheine
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.745 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy1: Mycobacterium abscessus Phosphopantetheine adenylyltransferase ternary complex with 4'-phosphopantetheine & non-hydrolyzable ATP analogue (AMPCPP)
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.697 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy2: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Compound 20
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.598 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy3: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 7
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.535 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy4: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 8
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.671 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy5: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 9
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy6: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 10
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.506 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy7: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 11
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.538 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy8: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 12
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.516 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yy9: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 13
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.485 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yya: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 14
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.807 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yyb: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 15
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.751 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yyc: Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 16
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2022-02-17
Authors: Thomas, S.E., Coyne, A.G., Blundell, T.L.
PDB entry 7yye: Orthorombic crystal structure of YTHDF1 YTH domain (G459N mutant) form I
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-02-17
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 7yyf: Orthorombic crystal structure of YTHDF1 YTH domain (G459N mutant) form II
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-02-17
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 7yyg: Crystal structure of gatekeeper of type III secretion system in Bordetella BopN
Classification: IMMUNOSUPPRESSANT
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-02-17
Authors: Prudnikova, T., Kuta Smatanova, I., Kamanova, J., Bumba, L.
PDB entry 7yyh: Structure of the human CCANdeltaT CENP-A alpha-satellite complex
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.9 Å
Deposited: 2022-02-17
Authors: Yatskevich, S., Muir, K.W., Bellini, D., Zhang, Z., Yang, J., Tischer, T., Predin, M., Dendooven, T., McLaughlin, S.H., Barford, D.
PDB entry 7yyi: Solution NMR structure of N-acetylglucosaminyltransferase V (GnTV) TMD
Classification: MEMBRANE PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-02-17
Authors: Silber, M., Muhle-Goll, C.
PDB entry 7yyj: Tetragonal crystal structure of YTHDF1 YTH domain (544AVV546 mutant)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-02-18
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 7yyk: Crystal structure of the O-fucosylated form of TSRs1-3 from the human thrombospondin 1
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-02-18
Authors: Berardinelli, S.J., Eletsky, A., Valero-Gonzalez, J., Ito, A., Manjunath, R., Hurtado-Guerrero, R., Prestegard, J.R., Woods, R.J., Haltiwanger, R.S.