LiteFold/PDB huggingface dataset:
PDB entry 7mhf: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) at 100 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhg: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) at 240 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5302 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhh: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) at 277 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1908 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhi: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) at 298 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhj: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) at 298 K and High Humidity
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.0005 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhk: Crystal Structure of Apo/Unliganded SARS-CoV-2 Main Protease (Mpro) at 310 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9601 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhl: Ensemble refinement structure of SARS-CoV-2 main protease (Mpro) at 100 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhm: Ensemble refinement structure of SARS-CoV-2 main protease (Mpro) at 240 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5302 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhn: Ensemble refinement structure of SARS-CoV-2 main protease (Mpro) at 277 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1908 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mho: Ensemble refinement structure of SARS-CoV-2 main protease (Mpro) at 298 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhp: Ensemble refinement structure of SARS-CoV-2 main protease (Mpro) at 298 K at high humidity
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.0005 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhq: Ensemble refinement structure of SARS-CoV-2 main protease (Mpro) at 310 K
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9601 Å
Deposited: 2021-04-15
Authors: Ebrahim, A., Riley, B.T., Kumaran, D., Andi, B., Fuchs, M.R., McSweeney, S., Keedy, D.A.
PDB entry 7mhr: KcsA E71V closed gate with K+
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Streptomyces lividans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2021-04-15
Authors: Rohaim, A., Li, J., Weingarth, M., Roux, B.
PDB entry 7mhs: Structure of p97 (subunits A to E) with substrate engaged
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-04-15
Authors: Xu, Y., Han, H., Cooney, I., Hill, C.P., Shen, P.S.
PDB entry 7mht: CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI/DNA COMPLEX
Classification: TRANSFERASE/DNA
Source organism: Haemophilus haemolyticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 1998-08-05
Authors: O'Gara, M., Horton, J.R., Roberts, R.J., Cheng, X.
PDB entry 7mhu: Sialidase24 apo
Classification: HYDROLASE
Source organism: Bacteroides acidifaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-04-15
Authors: Rees, S.D., Chang, G.A.
PDB entry 7mhv: Crystal Structure of Cysteine desulfurase NifS from Legionella pneumophila Philadelphia 1 in complex with pyridoxal 5'-phosphate
Classification: TRANSFERASE
Source organism: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-04-15
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7mhw: Crystal structure of the protease inhibitor U-Omp19 from Brucella abortus fused to Maltose-binding protein
Classification: MEMBRANE PROTEIN
Source organism: Brucella abortus; Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-04-15
Authors: Darriba, M.L., Klinke, S., Otero, L.H., Cerutti, M.L., Cassataro, J., Pasquevich, K.A.
PDB entry 7mhx: KcsA E71V closed gate with Ba2+
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Streptomyces lividans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-04-15
Authors: Rohaim, A., Li, J., Weingarth, M., Roux, B.
PDB entry 7mhy: Human Hedgehog acyltransferase (HHAT) in complex with palmitoyl-CoA and two Fab antibody fragments
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-04-16
Authors: Long, S.B., Jiang, Y.
PDB entry 7mhz: Human Hedgehog acyltransferase (HHAT) in complex with a palmitoylated Hedgehog peptide product and a Fab antibody fragment
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-04-16
Authors: Long, S.B., Jiang, Y.
PDB entry 7mi0: Crystal Structure of Glycosyltransferase from Rickettsia africae ESF-5
Classification: TRANSFERASE
Source organism: Rickettsia africae (strain ESF-5)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-04-16
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7mi1: X-ray structure of yeast dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound (compound 20)
Classification: MOTOR PROTEIN
Source organism: Enterobacteria phage T4; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2021-04-16
Authors: Santarossa, C.C., Ekiert, D.C., Bhabha, G., Kapoor, T.M.
PDB entry 7mi2: Seb1-G476S RNA binding domain
Classification: RNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-04-16
Authors: Jacewicz, A., Shuman, S.
PDB entry 7mi3: Signal subtracted reconstruction of AAA2, AAA3, and AAA4 domains of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Model 4
Classification: MOTOR PROTEIN
Source organism: Enterobacteria phage T4; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-04-16
Authors: Santarossa, C.C., Coudray, N., Urnavicius, L., Ekiert, D.C., Bhabha, G., Kapoor, T.M.
PDB entry 7mi4: Symmetrical PAM-PAM prespacer bound Cas4/Cas1/Cas2 complex
Classification: HYDROLASE/DNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-04-16
Authors: Hu, C.Y., Ke, A.K.
PDB entry 7mi5: Asymmetrical PAM-Non PAM prespacer bound Cas4/Cas1/Cas2 complex
Classification: HYDROLASE/DNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2021-04-16
Authors: Hu, C.Y., Ke, A.K.
PDB entry 7mi6: Yeast dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound, Model 1
Classification: MOTOR PROTEIN
Source organism: Enterobacteria phage T4; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-04-16
Authors: Santarossa, C.C., Urnavicius, L., Coudray, N., Ekeirt, D.C., Bhabha, G., Kapoor, T.M.
PDB entry 7mi8: Signal subtracted reconstruction of AAA5 and AAA6 domains of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Model 5
Classification: MOTOR PROTEIN
Source organism: Enterobacteria phage T4; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-04-16
Authors: Santarossa, C.C., Coudray, N., Urnavicius, L., Ekiert, D.C., Bhabha, G., Kapoor, T.M.
PDB entry 7mi9: Full integration complex of Cas1/Cas2 from Cas4-containing system
Classification: HYDROLASE/DNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2021-04-16
Authors: Hu, C.Y., Ke, A.K.
PDB entry 7mia: Maize rayado fino virus protease
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Maize rayado fino virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-04-16
Authors: Patel, A., Mark, B.L.
PDB entry 7mib: Half integration complex of Cas4/Cas1/Cas2 with Cas4 still on the Non-PAM side
Classification: HYDROLASE/DNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2021-04-16
Authors: Hu, C.Y., Ke, A.K.
PDB entry 7mic: Maize rayado fino virus protease in complex with Ubiquitin
Classification: VIRAL PROTEIN,HYDROLASE/SUBSTRATE
Source organism: Homo sapiens; Maize rayado fino virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-04-16
Authors: Patel, A., Mark, B.L.
PDB entry 7mid: Sub-complex of Cas4-Cas1-Cas2 bound PAM containing DNA
Classification: HYDROLASE/DNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2021-04-16
Authors: Hu, C.Y., Ke, A.K.
PDB entry 7mie: Crystal structure of the Borreliella burgdorferi PlzA protein in complex with c-di-GMP
Classification: SIGNALING PROTEIN
Source organism: Borrelia burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-04-16
Authors: Davies, C., Singh, A.
PDB entry 7mif: Human CTPS1 bound to inhibitor R80
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-04-16
Authors: Lynch, E.M., Dimattia, M.A., Kollman, J.M.
PDB entry 7mig: Human CTPS1 bound to inhibitor T35
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-04-16
Authors: Lynch, E.M., Dimattia, M.A., Kollman, J.M.
PDB entry 7mih: Human CTPS2 bound to inhibitor R80
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-04-16
Authors: Lynch, E.M., Dimattia, M.A., Kollman, J.M.
PDB entry 7mii: Human CTPS2 bound to inhibitor T35
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-04-16
Authors: Lynch, E.M., Dimattia, M.A., Kollman, J.M.
PDB entry 7mij: Mouse TRPV3 in MSP2N2 nanodiscs, closed state at 4 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.98 Å
Deposited: 2021-04-17
Authors: Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 7mik: Mouse TRPV3 in MSP2N2 nanodiscs, closed state at 42 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2021-04-17
Authors: Nadezhdin, K.D., Neuberger, A., Sobolevsky, A.I.
PDB entry 7mil: Mouse TRPV3 in MSP2N2 nanodiscs, sensitized state at 42 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2021-04-17
Authors: Nadezhdin, K.D., Neuberger, A., Sobolevsky, A.I.
PDB entry 7mim: Mouse TRPV3 in cNW11 nanodiscs, closed state at 4 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2021-04-17
Authors: Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 7min: Mouse TRPV3 in cNW11 nanodiscs, closed state at 42 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2021-04-17
Authors: Nadezhdin, K.D., Neuberger, A., Sobolevsky, A.I.
PDB entry 7mio: Mouse TRPV3 in cNW11 nanodiscs, open state at 42 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2021-04-17
Authors: Nadezhdin, K.D., Neuberger, A., Sobolevsky, A.I.
PDB entry 7mip: Mouse CTPS1 bound to inhibitor R80
Classification: LIGASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2021-04-17
Authors: Lynch, E.M., Dimattia, M.A., Kollman, J.M.
PDB entry 7miq: Crystal structure of a Glutathione S-transferase class Gtt2 of Vibrio parahaemolyticus (VpGSTT2)
Classification: TRANSFERASE
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2021-04-17
Authors: Valenzuela-Chavira, I., Serrano-Posada, H., Lopez-Zavala, A.A., Garcia-Orozco, K.D., Sotelo-Mundo, R.R.
PDB entry 7mir: Cryo-EM structure of SidJ-SdeA-CaM reaction intermediate complex
Classification: TRANSFERASE,HYDROLASE/LIGASE
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2021-04-17
Authors: Osinski, A., Black, M.H., Pawlowski, K., Chen, Z., Li, Y., Tagliabracci, V.S.
PDB entry 7mis: Cryo-EM structure of SidJ-SdeC-CaM reaction intermediate complex
Classification: TRANSFERASE/LIGASE
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-04-17
Authors: Osinski, A., Black, M.H., Pawlowski, K., Chen, Z., Li, Y., Tagliabracci, V.S.
PDB entry 7mit: Vascular KATP channel: Kir6.1 SUR2B propeller-like conformation 1
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-04-17
Authors: Sung, M.W., Shyng, S.L.
PDB entry 7miu: Mouse CTPS2 bound to inhibitor R80
Classification: LIGASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-04-17
Authors: Lynch, E.M., Dimattia, M.A., Kollman, J.M.
PDB entry 7miv: Mouse CTPS2-I250T bound to inhibitor R80
Classification: LIGASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-04-17
Authors: Lynch, E.M., Dimattia, M.A., Kollman, J.M.
PDB entry 7miw: Crystal Structure of Fumarate hydratase class II from Elizabethkingia anophelis NUHP1
Classification: LYASE
Source organism: Elizabethkingia anophelis NUHP1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2021-04-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7mix: Human N-type voltage-gated calcium channel Cav2.2 in the presence of ziconotide at 3.0 Angstrom resolution
Classification: TRANSPORT PROTEIN/TOXIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-04-18
Authors: Yan, N., Gao, S., Yao, X.
PDB entry 7miy: Human N-type voltage-gated calcium channel Cav2.2 at 3.1 Angstrom resolution
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-04-18
Authors: Yan, N., Gao, S., Yao, X.
PDB entry 7miz: Atomic structure of cortical microtubule from Toxoplasma gondii
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-04-18
Authors: Wang, X., Brown, A., Sibley, L.D., Zhang, R.
PDB entry 7mj0: LarB, a carboxylase/hydrolase involved in synthesis of the cofactor for lactate racemase, in complex with adenosine monophosphate AMP
Classification: LYASE (CARBON-CARBON)
Source organism: Lactobacillus plantarum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2021-04-19
Authors: Chatterjee, S., Rankin, J.A., Lagishetty, S., Hu, J., Hausinger, R.P.
PDB entry 7mj1: LarB, a carboxylase/hydrolase involved in synthesis of the cofactor for lactate racemase, in complex with NAD
Classification: LYASE (CARBON-CARBON)
Source organism: Lactobacillus plantarum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.402 Å
Deposited: 2021-04-19
Authors: Chatterjee, S., Rankin, J.A., Lagishetty, S., Hu, J., Hausinger, R.P.
PDB entry 7mj2: LarB, a carboxylase/hydrolase involved in synthesis of the cofactor for lactate racemase, in complex with Zn
Classification: LYASE (CARBON-CARBON)
Source organism: Lactobacillus plantarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-04-19
Authors: Chatterjee, S., Rankin, J.A., Lagishetty, S., Hu, J., Hausinger, R.P.
PDB entry 7mj3: Structure of Hact-4
Classification: UNKNOWN FUNCTION
Experimental method: SOLUTION NMR
Deposited: 2021-04-19
Authors: Schmidt, C.A., Daly, N.L.
PDB entry 7mj5: complex of human thrombin with XC-43
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-04-19
Authors: Lu, S., Tirloni, L., Andersen, J.F.
PDB entry 7mj6: HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-04-19
Authors: Toor, J.S., Tripathi, S.M., Truong, H.V., Yarmarkovich, M., Maris, J.M., Sgourakis, N.G.
PDB entry 7mj7: HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-04-19
Authors: Toor, J.S., Tripathi, S.M., Truong, H.V., Yarmarkovich, M., Maris, J.M., Sgourakis, N.G.
PDB entry 7mj8: HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2021-04-19
Authors: Toor, J.S., Tripathi, S.M., Truong, H.V., Yarmarkovich, M., Maris, J.M., Sgourakis, N.G.
PDB entry 7mj9: HLA-A*02:01 bound to Neuroblastoma Derived mutant IGFBPL1 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-04-19
Authors: Toor, J.S., Tripathi, S.M., Truong, H.V., Yarmarkovich, M., Maris, J.M., Sgourakis, N.G.
PDB entry 7mja: HLA-A*24:02 bound to Neuroblastoma derived PHOX2B peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2021-04-19
Authors: Toor, J.S., Tripathi, S.M., Truong, H.V., Yarmarkovich, M., Maris, J.M., Sgourakis, N.G.
PDB entry 7mjb: Crystal Structure of Nanoluc Luciferase Mutant R164Q
Classification: OXIDOREDUCTASE
Source organism: Oplophorus gracilirostris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-04-19
Authors: Shabalin, I.G., Reza, M.S., Ai, H., Minor, W.
PDB entry 7mjc: Crystal Structure Analysis of ALDH1B1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2021-04-20
Authors: Fernandez, D., Chen, J.K.
PDB entry 7mjd: Crystal Structure Analysis of ALDH1B1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2021-04-20
Authors: Fernandez, D., Chen, J.K.
PDB entry 7mjf: Crystal structure of Candidatus Liberibacter solanacearum dihydrodipicolinate synthase with pyruvate and succinic semi-aldehyde bound in active site
Classification: LYASE
Source organism: Candidatus Liberibacter solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-04-20
Authors: Gilkes, J., Frampton, R.A., Board, A.J., Sheen, C.R., Smith, G.R., Dobson, R.C.J.
PDB entry 7mjg: Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2021-04-20
Authors: Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S.
PDB entry 7mjh: Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to VH ab8
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2021-04-20
Authors: Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S.
PDB entry 7mji: Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to VH ab8 (focused refinement of RBD and VH ab8)
Classification: Viral Protein/Immune System
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2021-04-20
Authors: Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S.
PDB entry 7mjj: Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (class 1)
Classification: VIRAL PROTEIN/Immune System
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2021-04-20
Authors: Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S.
PDB entry 7mjk: Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (class 2)
Classification: VIRAL PROTEIN/Immune System
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2021-04-20
Authors: Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S.
PDB entry 7mjl: Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (focused refinement of RBD and Fab ab1)
Classification: Viral Protein/Immune System
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2021-04-20
Authors: Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S.
PDB entry 7mjm: Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2021-04-20
Authors: Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S.
PDB entry 7mjn: Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN/Hydrolase
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2021-04-20
Authors: Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S.
PDB entry 7mjo: Vascular KATP channel: Kir6.1 SUR2B quatrefoil-like conformation 1
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-04-20
Authors: Sung, M.W., Shyng, S.L.
PDB entry 7mjp: Vascular KATP channel: Kir6.1 SUR2B propeller-like conformation 2
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-04-20
Authors: Sung, M.W., Shyng, S.L.
PDB entry 7mjq: Vascular KATP channel: Kir6.1 SUR2B quatrefoil-like conformation 2
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-04-20
Authors: Sung, M.W., Shyng, S.L.
PDB entry 7mjr: Vip4Da2 toxin structure
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2021-04-20
Authors: Rydel, T.J., Duda, D., Zheng, M., Henry, A.
PDB entry 7mjs: Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3
Classification: LIPID TRANSPORT/IMMUNE SYSTEM
Source organism: Gallus gallus; Synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2021-04-20
Authors: Cater, R.J., Chua, G.L., Erramilli, S.K., Keener, J.E., Choy, B.C., Tokarz, P., Chin, C.F., Quek, D.Q.Y., Kloss, B., Pepe, J.G., Parisi, G., Wong, B.H., Clarke, O.B., Marty, M.T., Kossiakoff, A.A., Khelashvili, G., Silver, D.L., Mancia, F.
PDB entry 7mjt: KcsA open gate E71V mutant with Barium
Classification: MEMBRANE PROTEIN
Source organism: Streptomyces lividans; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2021-04-20
Authors: Rohaim, A., Li, J., Weingarth, M., Roux, B.
PDB entry 7mju: Crystal structure of human AF10 PZP bound to histone H3 tail
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-04-20
Authors: Klein, B.J., Kutateladze, T.G.
PDB entry 7mjv: MiaB in the complex with s-adenosylmethionine and RNA
Classification: TRANSFERASE/RNA
Source organism: Bacteroides uniformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2021-04-20
Authors: Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.
PDB entry 7mjw: Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA
Classification: TRANSFERASE/RNA
Source organism: Bacteroides uniformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-04-20
Authors: Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.
PDB entry 7mjx: MiaB in the complex with 5'-deoxyadenosine, methionine and RNA
Classification: TRANSFERASE/RNA
Source organism: Bacteroides uniformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-04-20
Authors: Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.
PDB entry 7mjy: MiaB in the complex with s-adenosyl-L-homocysteine and RNA
Classification: TRANSFERASE/RNA
Source organism: Bacteroides uniformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2021-04-20
Authors: Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.
PDB entry 7mjz: The structure of MiaB with pentasulfide bridge
Classification: TRANSFERASE
Source organism: Bacteroides uniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2021-04-20
Authors: Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.
PDB entry 7mk0: Trypanosoma cruzi Nucleoside Diphosphate Kinase 1 form a quinary multihexameric structure
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2021-04-21
Authors: Gomez, J.A., Aguilar, C.F.
PDB entry 7mk1: Structure of a protein-modified aptamer complex
Classification: IMMUNE SYSTEM/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-04-21
Authors: Ren, X., Pyle, A.M.
PDB entry 7mk2: CryoEM Structure of NPR1
Classification: PLANT PROTEIN, IMMUNE SYSTEM
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-04-21
Authors: Kumar, S., Zhou, Y., Dillard, L., Borgnia, M., Bartesaghi, A., Zhou, P.
PDB entry 7mk3: Crystal structure of NPR1
Classification: PLANT PROTEIN, IMMUNE SYSTEM
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2021-04-21
Authors: Cheng, J., Wu, Q., Zhou, P.
PDB entry 7mk4: Co-bound crystal structure of the engineered cyt cb562 variant, DiCyt2
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2021-04-21
Authors: Choi, T.S., Tezcan, F.A.
PDB entry 7mk5: Crystal structure of Escherichia coli ClpP covalently inhibited by clipibicyclene
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2021-04-21
Authors: Culp, E.J., Sychantha, D., Hobson, C., Pawlowski, A.J., Prehna, G., Wright, G.D.
PDB entry 7mk6: KcsA open gate E71V mutant with sodium
Classification: MEMBRANE PROTEIN
Source organism: Streptomyces lividans; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-04-21
Authors: Rohaim, A., Li, J., Weingarth, M., Roux, B.
PDB entry 7mk7: Augmentor domain of augmentor-beta
Classification: CYTOKINE
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42815 Å
Deposited: 2021-04-21
Authors: Krimmer, S.G., Reshetnyak, A.V., Puleo, D.E., Schlessinger, J.
PDB entry 7mk8: Crystal structure of a surface mutant of human fetal-specific CYP3A7 bound to dithiothreitol
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-04-21
Authors: Sevrioukova, I.F.
PDB entry 7mk9: Complex structure of trailing EC of EC+EC (trailing EC-focused)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2021-04-22
Authors: Yang, C., Murakami, K.
PDB entry 7mka: Structure of EC+EC (leading EC-focused)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2021-04-22
Authors: Yang, C., Murakami, K.
PDB entry 7mkb: Human leukocyte antigen A*0201 in complex with SARS-CoV-2 epitope YLQPRTFLL
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-04-22
Authors: Nyovanie, S.T., Patskovsky, Y., Krogsgaard, M.
PDB entry 7mkc: N74D mutant of the HIV-1 capsid protein in complex with PF-3450074 (PF74)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2021-04-23
Authors: Kirby, K.A., Sarafianos, S.G.
PDB entry 7mkd: Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 1)
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-04-23
Authors: Saecker, R.M., Darst, S.A., Chen, J.
PDB entry 7mke: Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 2)
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-04-23
Authors: Saecker, R.M., Darst, S.A., Chen, J.
PDB entry 7mkf: Paired helical tau filament extracted from PrP-CAA Patient brain tissue | tau filament | PHF Tau
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-04-23
Authors: Hoq, M.R.
PDB entry 7mkg: Straight tau filament extracted from PrP-CAA Patient brain tissue | tau filament | SF Tau
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2021-04-23
Authors: Hoq, M.R.
PDB entry 7mkh: Paired helical tau filament extracted from GSS Patient brain tissue | tau filament from Gerstmann Straussler Scheinker disease | PHF Tau
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-04-23
Authors: Hoq, M.R.
PDB entry 7mki: Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR (-5G to C) promoter DNA
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-04-23
Authors: Saecker, R.M., Darst, S.A., Chen, J.
PDB entry 7mkj: Cryo-EM structure of Escherichia coli RNA polymerase bound to T7A1 promoter DNA
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-04-23
Authors: Saecker, R.M., Darst, S.A., Chen, J.
PDB entry 7mkk: Crystal structure of Drosophila Panoramix in complex with Sov NTD
Classification: RNA BINDING/Metal Binding protein
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-04-24
Authors: Wang, J., Patel, D.J.
PDB entry 7mkl: SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-04-24
Authors: Adams, L.J., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7mkm: SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2021-04-24
Authors: Adams, L.J., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7mkn: Escherichia coli RNA polymerase and RapA elongation complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-04-26
Authors: Qayyum, M.Z., Murakami, K.S.
PDB entry 7mko: Escherichia coli RNA polymerase elongation complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2021-04-26
Authors: Qayyum, M.Z., Murakami, K.S.
PDB entry 7mkp: Escherichia coli RNA polymerase core enzyme
Classification: TRANSCRIPTION
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2021-04-26
Authors: Qayyum, M.Z., Murakami, K.S.
PDB entry 7mkq: Escherichia coli RNA polymerase and RapA binary complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2021-04-26
Authors: Qayyum, M.Z., Murakami, K.S.
PDB entry 7mkr: Crystal structure of the GH12 domain from Acidothermus cellulolyticus GuxA
Classification: HYDROLASE
Source organism: Acidothermus cellulolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-04-26
Authors: Lunin, V.V.
PDB entry 7mks: Crystal structure of the GH12 domain from Acidothermus cellulolyticus GuxA bound to cellobiose
Classification: HYDROLASE
Source organism: Acidothermus cellulolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-04-26
Authors: Lunin, V.V.
PDB entry 7mkt: Crystal structure of r(GU)11G-NMM complex
Classification: RNA
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-04-26
Authors: Bingman, C.A., Roschdi, S., Nomura, Y., Butcher, S.E.
PDB entry 7mku: Crystal Structure of ENOYL COA-HYDRATASE2 from Arabidopsis thaliana
Classification: LYASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.648 Å
Deposited: 2021-04-26
Authors: Power, S.K., Korasick, D.A., Jez, J.M., Strader, L.C.
PDB entry 7mkv: Engineered PLP-dependent decarboxylative aldolase from Aspergillus flavus, UstD2.0, bound as the internal aldimine
Classification: LYASE, TRANSFERASE
Source organism: Aspergillus flavus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-04-27
Authors: Ellis, J.M., Buller, A.R., Bingman, C.A.
PDB entry 7mkx: Crystal Structure Analysis of human CDK2 and CCNA2 complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2021-04-27
Authors: Seo, H.-S., Dhe-Paganon, S.
PDB entry 7mky: SARS-CoV-2 frameshifting pseudoknot RNA
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2021-04-27
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 7mkz: PTP1B F225Y mutant, open state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-04-27
Authors: Torgeson, K.R., Page, R., Peti, W.
PDB entry 7ml0: RNA polymerase II pre-initiation complex (PIC1)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-04-27
Authors: Yang, C., Fujiwara, R., Kim, H.J., Gorbea Colon, J.J., Steimle, S., Garcia, B.A., Murakami, K.
PDB entry 7ml1: RNA polymerase II pre-initiation complex (PIC2)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-04-27
Authors: Yang, C., Fujiwara, R., Kim, H.J., Gorbea Colon, J.J., Steimle, S., Garcia, B.A., Murakami, K.
PDB entry 7ml2: RNA polymerase II pre-initiation complex (PIC3)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-04-27
Authors: Yang, C., Fujiwara, R., Kim, H.J., Gorbea Colon, J.J., Steimle, S., Garcia, B.A., Murakami, K.
PDB entry 7ml3: General transcription factor TFIIH (weak binding)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2021-04-27
Authors: Yang, C., Fujiwara, R., Kim, H.J., Gorbea Colon, J.J., Steimle, S., Garcia, B.A., Murakami, K.
PDB entry 7ml4: RNA polymerase II initially transcribing complex (ITC)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-04-27
Authors: Yang, C., Fujiwara, R., Kim, H.J., Gorbea Colon, J.J., Steimle, S., Garcia, B.A., Murakami, K.
PDB entry 7ml5: Structure of the Starch Branching Enzyme I (BEI) complexed with maltododecaose from Oryza sativa L
Classification: TRANSFERASE/SUBSTRATE
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-04-27
Authors: Nayebi Gavgani, H., Fawaz, R., Geiger, J.H.
PDB entry 7ml6: Structure of CalU17 from the Calicheamicin Biosynthesis Pathway of Micromonospora echinospora
Classification: UNKNOWN FUNCTION
Source organism: Micromonospora echinospora
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-04-27
Authors: Kosgei, A.J., Miller, M.D., Xu, W., Van Lanen, S.G., Thorson, J.S., Phillips Jr., G.N.
PDB entry 7ml7: Structural basis for CSPG4 as a receptor for TcdB and a therapeutic target in Clostridioides difficile infection
Classification: TOXIN
Source organism: Clostridioides difficile; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2021-04-27
Authors: Chen, P., Jin, R.
PDB entry 7ml8: The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ001023038
Classification: VIRAL PROTEIN/Inhibitor
Source organism: Influenza A virus (strain swl A/California/04/2009 H1N1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-04-27
Authors: Cuypers, M.G., Slavish, P.J., Yun, M.K., Dubois, R., Rankovic, Z., White, S.W.
PDB entry 7ml9: The Mpp75Aa1.1 beta-pore-forming protein from Brevibacillus laterosporus
Classification: TOXIN
Source organism: Brevibacillus laterosporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2021-04-27
Authors: Rydel, T.J., Zheng, M., Evdokimov, A.
PDB entry 7mla: Solution NMR structure of HDMX in complex with Zn and MCo-52-2
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2021-04-28
Authors: Ramirez, L.S., Theophall, G., Chaudhuri, D., Camarero, J.C., Shekhtman, A.
PDB entry 7mlb: Crystal structure of Thermus thermophilus transcription initiation complex with 5nt RNA
Classification: TRANSCRIPTION
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2021-04-28
Authors: Liu, Y., Ebright, R.H.
PDB entry 7mlc: PYL10 bound to the ABA pan-antagonist 4a
Classification: PLANT PROTEIN/ANTAGONIST
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2021-04-28
Authors: Peterson, F.C., Vaidya, A.S., Volkman, B.F., Cutler, S.R.
PDB entry 7mld: PYL10 bound to the ABA pan-antagonist antabactin
Classification: PLANT PROTEIN/ANTAGONIST
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-28
Authors: Peterson, F.C., Vaidya, A.S., Volkman, B.F., Cutler, S.R.
PDB entry 7mle: Crystal Structure of HLA-A*03:01 in complex with VVRPSVASK, an 9-mer epitope from Influenza B virus
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-04-28
Authors: Gras, S., Nguyen, A.T., Szeto, C.
PDB entry 7mlf: Crystal Structure of SARS-CoV-2 Main Protease (3CLpro/Mpro) Covalently Bound to Compound C7
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-04-28
Authors: Sharon, I., Stille, J., Tjutrins, J., Wang, G., Venegas, F.A., Hennecker, C., Rueda, A.M., Miron, C.E., Pinus, S., Labarre, A., Patrascu, M.B., Vlaho, D., Huot, M., Mittermaier, A.K., Moitessier, N., Schmeing, T.M.
PDB entry 7mlg: Crystal Structure of SARS-CoV-2 Main Protease (3CLpro/Mpro) Covalently Bound to Compound C63
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-04-28
Authors: Sharon, I., Stille, J., Tjutrins, J., Wang, G., Venegas, F.A., Hennecker, C., Rueda, A.M., Miron, C.E., Pinus, S., Labarre, A., Patrascu, M.B., Vlaho, D., Huot, M., Mittermaier, A.K., Moitessier, N., Schmeing, T.M.
PDB entry 7mlh: Crystal structure of human IgE (2F10) in complex with Der p 2.0103
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Dermatophagoides pteronyssinus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-04-28
Authors: Khatri, K., Kapingidza, A.B., Richardson, C.M., Vailes, L.D., Wunschmann, S., Dolamore, C., Chapman, M.D., Smith, S.A., Pomes, A., Chruszcz, M.
PDB entry 7mli: Crystal structure of Thermus thermophilus reiterative transcription complex with 5nt oligo-C RNA
Classification: TRANSCRIPTION
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2021-04-28
Authors: Liu, Y., Ebright, R.H.
PDB entry 7mlj: Crystal structure of Thermus thermophilus reiterative transcription complex with 4nt oligo-G RNA
Classification: TRANSCRIPTION
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.75 Å
Deposited: 2021-04-28
Authors: Liu, Y., Ebright, R.H.
PDB entry 7mlk: Crystal structure of human PI3Ka (p110a subunit) with MMV085400 bound to the active site determined at 2.9 angstroms resolution
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2021-04-28
Authors: Krake, S.H., Martinez, P.D.G., Poggi, M.L., Ferreira, M.S., Aguiar, A.C.C., Souza, G.E., Wenlock, M., Jones, B., Steinbrecher, T., Day, T., McPhail, J., Burke, J., Yeo, T., Mok, S., Uhlemann, A.C., Fidock, D.A., Chen, P., Grodsky, N., Deng, Y.L., Guido, R.V.C., Campbell, S.F., Willis, P.A., Dias, L.C.
PDB entry 7mll: Solution structure of Exenatide (exendin-4) in 30-vol% trifluoroethanol using CS-Rosetta
Classification: PROTEIN BINDING
Experimental method: SOLUTION NMR
Deposited: 2021-04-28
Authors: Mishra, S.H., Bhavaraju, S.
PDB entry 7mlm: Crystal structure of mouse TLR4/MD-2 in complex with sulfatides
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.104 Å
Deposited: 2021-04-28
Authors: Su, L., Beutler, B.
PDB entry 7mln: Crystal structure of ricin A chain in complex with 5-(o-tolyl)thiophene-2-carboxylic acid
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2021-04-28
Authors: Harijan, R.K., Li, X.P., Cao, B., Augeri, D., Bonanno, J.B., Almo, S.C., Tumer, N.E., Schramm, V.L.
PDB entry 7mlo: Crystal structure of ricin A chain in complex with 5-mesitylthiophene-2-carboxylic acid
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-04-28
Authors: Harijan, R.K., Li, X.P., Cao, B., Augeri, D., Bonanno, J.B., Almo, S.C., Tumer, N.E., Schramm, V.L.