LiteFold/PDB huggingface dataset:
PDB entry 8wf5: Horse heart myoglobin reconstituted with an iron complex of porphyrin bearing two CF3 groups (rMb(FePor(CF3)2))
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-09-19
Authors: Kagawa, Y., Oohora, K., Himiyama, T., Suzuki, A., Hayashi, T.
PDB entry 8wf6: 14-3-3 zeta complexed with S559 phosphorylated peptide derived from GPIb alpha cytoplasmic domain
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2023-09-19
Authors: Shu, Z.M., Zhou, A.W.
PDB entry 8wf7: The Crystal Structure of integrase from Biortus
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-09-19
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Li, J.
PDB entry 8wf8: Cryo-EM structure of the PspCas13b-crRNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Prevotella sp.; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-09-19
Authors: Ishikawa, J., Kato, K., Yamashita, K., Nishizawa, T., Nishimasu, H.
PDB entry 8wf9: Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 1)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Prevotella sp.; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-09-19
Authors: Ishikawa, J., Kato, K., Yamashita, K., Nishizawa, T., Nishimasu, H.
PDB entry 8wfa: Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 2)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Prevotella sp.; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-09-19
Authors: Ishikawa, J., Kato, K., Yamashita, K., Nishizawa, T., Nishimasu, H.
PDB entry 8wfb: Cryo-EM structure of the dPspCas13b-ADAR2-crRNA-target RNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Prevotella sp.; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2023-09-19
Authors: Ishikawa, J., Kato, K., Yamashita, K., Nishizawa, T., Nishimasu, H.
PDB entry 8wfc: N5, N10-methylenetetrahydrofolate dehydrogenase/cyclohydrolase
Classification: OXIDOREDUCTASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-09-19
Authors: Hwang, J., Lee, J.H., Do, H.
PDB entry 8wfd: The cryo-EM structure of TdpAB in complex with AMPPNP and DNA
Classification: TRANSLOCASE/DNA
Source organism: Thermus antranikianii DSM 12462; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2023-09-19
Authors: An, T., Tan, Q.
PDB entry 8wfe: The Crystal Structure of PPARg from Biortus.
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-19
Authors: Wang, F., Cheng, W., Lv, Z., Guo, S., Lin, D.
PDB entry 8wff: The Crystal Structure of LYN from Biortus.
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-09-19
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Lu, Y.
PDB entry 8wfg: The Crystal Structure of KEAP1 from Biortus.
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.251 Å
Deposited: 2023-09-19
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Shen, Z.
PDB entry 8wfh: Crystal structure of Omicron BA.4/5 in complex with a neutralizing antibody scFv D1
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-09-19
Authors: Terekhov, S.S., Mokrushina, Y.A., Zhang, M., Zhang, N., Gabibov, A., Guo, Y.
PDB entry 8wfi: human glycine transporter 1 in complex with glycine in occluded conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2023-09-19
Authors: Wei, Y., Zhao, Y.
PDB entry 8wfj: human glycine transporter 1 in complex with ALX-5407 in inward facing conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-09-19
Authors: Wei, Y., Zhao, Y.
PDB entry 8wfk: human glycine transporter 1 in complex with SSR504734 in outward facing conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-09-19
Authors: Wei, Y., Zhao, Y.
PDB entry 8wfl: human glycine transporter 1 in complex with PF-03463275 in outward facing conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-09-19
Authors: Wei, Y., Zhao, Y.
PDB entry 8wfm: Crystal structure of Omicron BA.1 in complex with a neutralizing antibody scFv T11
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-09-19
Authors: Terekhov, S.S., Mokrushina, Y.A., Zhang, M., Zhang, N., Gabibov, A., Guo, Y.
PDB entry 8wfn: Cryo-EM structure of DSR2-TTP
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.48 Å
Deposited: 2023-09-19
Authors: Zhang, H., Li, Z., Li, X.Z.
PDB entry 8wfo: Durio zibethinus trypsin inhibitor DzTI-4
Classification: PLANT PROTEIN
Source organism: Durio zibethinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-09-20
Authors: Deentanya, P., Wangkanont, K.
PDB entry 8wfp: Crystal structure of polo-like kinase(PLK1)PBD in complex with DD-1
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-09-20
Authors: Park, J., La, Y.K., Bang, J.K., Lee, S.J.
PDB entry 8wfq: The Crystal Structure of RALDH1 from Biortus.
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-09-20
Authors: Wang, F., Cheng, W., Lv, Z., Qi, J., Shen, Z.
PDB entry 8wfr: The Crystal Structure of PCSK9 from Biortus.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-09-20
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Lu, Y.
PDB entry 8wfs: Cryo-EM structure of GPIb-IX Complex
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-09-20
Authors: Shu, Z.M., Duan, J.S., Zhou, A.W.
PDB entry 8wft: Crystal structure of beta-glucosidase from Thermoanaerobacterium saccharolyticum (Data 1)
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-20
Authors: Nam, K.H.
PDB entry 8wfu: Crystal structure of beta-glucosidase from Thermoanaerobacterium saccharolyticum (Data 2)
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-20
Authors: Nam, K.H.
PDB entry 8wfv: Crystal structure of beta-glucosidase from Thermoanaerobacterium saccharolyticum (Data 3)
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-20
Authors: Nam, K.H.
PDB entry 8wfw: Crystal structure of beta-glucosidase from Thermoanaerobacterium saccharolyticum (Data 4)
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-09-20
Authors: Nam, K.H.
PDB entry 8wfx: Cryo-EM structure of CRISPR-Csm effector complex from Mycobacterium canettii
Classification: RNA BINDING PROTEIN/RNA
Source organism: Mycobacterium canettii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2023-09-20
Authors: Huo, Y., Ma, X., Jiang, T.
PDB entry 8wfy: The Crystal Structure of SHP2 from Biortus.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-09-20
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Li, J.
PDB entry 8wfz: AtGORK Full length 2
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-09-20
Authors: Chen, Y.H., Li, Q.Y., Qin, L., Tang, L.H., zhang, C.R.
PDB entry 8wg0: Crystal structure of GH97 glucodextranase from Flavobacterium johnsoniae in complex with glucose
Classification: HYDROLASE
Source organism: Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-09-20
Authors: Kurata, R., Nakamura, S., Miyazaki, T.
PDB entry 8wg1: Crystal structure of GH97 glucodextranase mutant E509Q from Flavobacterium johnsoniae in complex with panose
Classification: HYDROLASE
Source organism: Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-09-20
Authors: Kurata, R., Nakamura, S., Miyazaki, T.
PDB entry 8wg2: Crystal structure of GH97 glucodextranase mutant E509Q from Flavobacterium johnsoniae in complex with isomaltotriose
Classification: HYDROLASE
Source organism: Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-09-20
Authors: Kurata, R., Nakamura, S., Miyazaki, T.
PDB entry 8wg3: mouse TMEM63b in LMNG-CHS micelle
Classification: LIPID TRANSPORT
Source organism: Aequorea victoria; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-20
Authors: Miyata, Y., Takahashi, K., Lee, Y., Sultan, C.S., Kuribayashi, R., Takahashi, M., Hata, K., Bamba, T., Izumi, Y., Liu, K., Uemura, T., Nomura, N., Iwata, S., Nagata, S., Nishizawa, T., Segawa, K.
PDB entry 8wg4: mouse TMEM63b in DDM-CHS micelle with YN9303-24 Fab
Classification: LIPID TRANSPORT
Source organism: Aequorea victoria; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-20
Authors: Miyata, Y., Takahashi, K., Lee, Y., Sultan, C.S., Kuribayashi, R., Takahashi, M., Hata, K., Bamba, T., Izumi, Y., Liu, K., Uemura, T., Nomura, N., Iwata, S., Nagata, S., Nishizawa, T., Segawa, K.
PDB entry 8wg5: Cryo-EM structure of USP16 bound to H2AK119Ub nucleosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-09-20
Authors: Ai, H.S., He, Z.Z., Deng, Z.H., Liu, L.
PDB entry 8wg6: Crystal structure of major pilin PilB from Streptococcus sanguinis - SeMet derivative
Classification: CELL ADHESION
Source organism: Streptococcus sanguinis SK36
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-09-20
Authors: Yadav, S., Parijat, P., Krishnan, V.
PDB entry 8wg7: Cryo-EM structures of peptide free and Gs-coupled GLP-1R
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-09-20
Authors: Cong, Z.T., Zhao, F.H., Li, Y., Luo, G., Zhou, Q.T., Yang, D.H., Wang, M.W.
PDB entry 8wg8: Cryo-EM structures of peptide free and Gs-coupled GCGR
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; Spodoptera frugiperda; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2023-09-20
Authors: Cong, Z.T., Zhao, F.H., Li, Y., Luo, G., Zhou, Q.T., Yang, D.H., Wang, M.W.
PDB entry 8wg9: mGlu2-mGlu4 heterodimer bound mGlu4 agonist E7P
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.46 Å
Deposited: 2023-09-20
Authors: Zhang, Y., Liu, J.
PDB entry 8wgb: mGlu2-4 heterodimer bound with Gi
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-20
Authors: Zhang, Y., Liu, J.
PDB entry 8wgc: heterodimer of mGlu2 and mGlu4 bound with mGlu2 agonist LY379268
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.95 Å
Deposited: 2023-09-20
Authors: Zhang, Y., Liu, J.
PDB entry 8wgd: mGlu2-4 inactive heterodimer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.45 Å
Deposited: 2023-09-20
Authors: Zhang, Y., Liu, J.
PDB entry 8wge: Cryo-EM structure of the ZAC zinc-activated channel in the Cys-loop receptor superfamily
Classification: TRANSPORT PROTEIN
Source organism: Oryzias latipes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-21
Authors: Jin, F., Hattori, M.
PDB entry 8wgf: The Crystal Structure of JNK3 from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-21
Authors: Wang, F., Cheng, W., Lv, Z., Ju, C., Wang, J.
PDB entry 8wgg: Crystal structure of basal pilin PilB from Streptococcus sanguinis
Classification: CELL ADHESION
Source organism: Streptococcus sanguinis SK36
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-09-21
Authors: Yadav, S., Parijat, P., Krishnan, V.
PDB entry 8wgh: Cryo-EM structure of the red-shifted Fittonia albivenis PSI-LHCI
Classification: PHOTOSYNTHESIS
Source organism: Fittonia albivenis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-09-21
Authors: Huang, G.Q., Li, X.X., Sui, S.F., Qin, X.C.
PDB entry 8wgi: Multicyclic peptide molecules targeting ROR1 with high affinity
Classification: BIOSYNTHETIC PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-09-21
Authors: Liu, H.T.
PDB entry 8wgj: Multicyclic peptide molecules targeting TROP2 with high affinity
Classification: BIOSYNTHETIC PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-09-21
Authors: Liu, H.T.
PDB entry 8wgk: Crystal structure of Rhodothermus marinus substrate-binding protein (Br soaking)
Classification: TRANSPORT PROTEIN
Source organism: Rhodothermus marinus DSM 4252
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-09-22
Authors: Nam, K.H.
PDB entry 8wgl: Crystal structure of Rhodothermus marinus substrate-binding protein (Hg soaking)
Classification: TRANSPORT PROTEIN
Source organism: Rhodothermus marinus DSM 4252
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-22
Authors: Nam, K.H.
PDB entry 8wgm: Quadruple mutant Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS V1/S, N51I+C59R+S108N+I164L) complexed with LA1, NADPH and dUMP
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum VS/1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-09-22
Authors: Vanichtanankul, J., Saeyang, T., Vitsupakorn, D., Arwon, U., Decharuangsilp, S., Yuthavong, Y., Kamchonwongpaisan, S.
PDB entry 8wgn: Human dihydrofolate reductase (HsDHFR) complexed with NADPH and LA1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-22
Authors: Vanichtanankul, J., Saeyang, T., Vitsupakorn, D., Decharuangsilp, S., Arwon, U., Yuthavong, Y., Kamchonwongpaisan, S.
PDB entry 8wgo: Cryo-EM structure of ClassIII Lanthipeptide modification enzyme PneKC in the presence of PneA and GTPrS.
Classification: ANTIMICROBIAL PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-22
Authors: Li, Y., Luo, M., Shao, K., Li, J.
PDB entry 8wgp: Crystal structure of DsRed-Monomer
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-09-22
Authors: Nam, K.H.
PDB entry 8wgq: The Crystal Structure of L-asparaginase from Biortus.
Classification: HYDROLASE
Source organism: Dickeya chrysanthemi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-09-22
Authors: Wang, F., Cheng, W., Lv, Z., Ju, C., Wang, J.
PDB entry 8wgr: Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with antidepressant desipramine in KCl condition.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-09-22
Authors: Tan, J., Xiao, Y., Kong, F., Lei, J., Yuan, Y., Yan, C.
PDB entry 8wgs: Crystal structure of V30M-TTR in complex with compound 4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2023-09-22
Authors: Yokoyama, T.
PDB entry 8wgt: Crystal structure of V30M-TTR in complex with compound 7
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.696 Å
Deposited: 2023-09-22
Authors: Yokoyama, T.
PDB entry 8wgu: Crystal structure of V30M-TTR in complex with compound 20
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.508 Å
Deposited: 2023-09-22
Authors: Yokoyama, T.
PDB entry 8wgv: BA.2(S375) Spike (S6P)/hACE2 complex
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-09-22
Authors: Wei, X., Zhang, Z.
PDB entry 8wgw: Local refinement of RBD-ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-22
Authors: Wei, X., Zhang, Z.
PDB entry 8wgx: Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with norepinephrine in nanodisc.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-09-22
Authors: Tan, J., Xiao, Y., Kong, F., Lei, J., Yuan, Y., Yan, C.
PDB entry 8wgy: MPOX E5 hexamer AMP-PNP and ssDNA bound form with clear primase domain
Classification: DNA BINDING PROTEIN/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-09-22
Authors: Zhang, Z., Dong, C.
PDB entry 8wgz: MPOX E5 double hexamer ssDNA bound conformation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-09-22
Authors: Zhang, Z., Dong, C.
PDB entry 8wh0: MPOX E5 hexamer ssDNA and AMP-PNP bound conformation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2023-09-22
Authors: Zhang, Z., Dong, C.
PDB entry 8wh2: MPOX E5 hexamer 2ATP, 2ADP, and ssDNA binding comformation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-22
Authors: Zhang, Z., Dong, C.
PDB entry 8wh3: MPOX E5 hexamer apo form
Classification: DNA BINDING PROTEIN
Source organism: Monkeypox virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-09-22
Authors: Zhang, Z., Dong, C.
PDB entry 8wh4: MPOX E5 hexamer ssDNA bound apo conformation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-09-22
Authors: Zhang, Z., Dong, C.
PDB entry 8wh5: Structure of DDM1-nucleosome complex in the apo state
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-09-22
Authors: Liu, Y., Zhang, Z., Du, J.
PDB entry 8wh6: MPOX E5 hexamer ADP and ssDNA bound and clear primase domain conformation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-09-22
Authors: Zhang, Z., Dong, C.
PDB entry 8wh7: Structure of hemagglutinin from Asiatic toad influenza-like virus
Classification: VIRAL PROTEIN
Source organism: Wuhan asiatic toad influenza virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-09-22
Authors: Zhang, D., Xie, Y.F., Chai, Y., Shi, Y., Liu, W.J., Qi, J.X., Gao, G.F., Gao, F.
PDB entry 8wh8: Structure of DDM1-nucleosome complex in ADP state
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-22
Authors: Liu, Y., Zhang, Z., Du, J.
PDB entry 8wh9: Structure of DDM1-nucleosome complex in ADP-BeFx state
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-09-22
Authors: Liu, Y., Zhang, Z., Du, J.
PDB entry 8wha: Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2023-09-22
Authors: Liu, Y., Zhang, Z., Du, J.
PDB entry 8whb: Structure of nucleosome core particle of Arabidopsis thaliana
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-09-23
Authors: Liu, Y., Zhang, Z., Du, J.
PDB entry 8whc: Durio zibethinus trypsin inhibitor DzTI-9
Classification: PLANT PROTEIN
Source organism: Durio zibethinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-09-23
Authors: Deentanya, P., Wangkanont, K.
PDB entry 8whg: imine reductase mutant - M3
Classification: OXIDOREDUCTASE
Source organism: Streptomyces viridochromogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2023-09-23
Authors: Zhu, X.X., Chen, X.R., Zheng, G.W.
PDB entry 8whh: Crystal structure of Se-Met derivative CLASP2 in complex with CLIP170
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.801 Å
Deposited: 2023-09-23
Authors: Jin, G., Wei, Z.
PDB entry 8whi: Crystal structure of native CLASP2 in complex with CLIP170
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.853 Å
Deposited: 2023-09-23
Authors: Jin, G., Wei, Z.
PDB entry 8whj: Crystal structure of CLASP2 TOG4 fused with LL5beta
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-23
Authors: Jia, X., Wei, Z.
PDB entry 8whk: Crystal structure of CLASP2 in complex with LL5beta
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2023-09-23
Authors: Jia, X., Wei, Z.
PDB entry 8whl: Crystal structure of CLASP2 in complex with CENP-E
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-09-23
Authors: Jia, X., Wei, Z.
PDB entry 8whm: Crystal structure of the ELKS2/LL5beta complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-23
Authors: Jia, X., Wei, Z.
PDB entry 8whn: Crystal Structure of the cytoplasmic domain of OST1 (Ribophorin I) from Candidatus Prometheoarchaeum syntrophicum strain MK-D1
Classification: TRANSLOCASE
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-09-23
Authors: Robinson, R.C., Carilo, I.
PDB entry 8who: Crystal structure of AtHPPD-YH20541 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.892 Å
Deposited: 2023-09-23
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8whp: Crystal structure of AtHPPD-YH201042 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.919 Å
Deposited: 2023-09-23
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8whq: Crystal structure of AtHPPD-YH21398 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.695 Å
Deposited: 2023-09-23
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8whs: Spike Trimer of BA.2.86 in complex with one hACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-09-23
Authors: Yue, C., Liu, P.
PDB entry 8wht: Cryo-EM structure of the LP ring within the flagellar motor-hook complex in the CW state
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-09-23
Authors: Tan, J.X., Zhang, L., Zhou, Y., Zhu, Y.Q.
PDB entry 8whu: Spike Trimer of BA.2.86 in complex with two hACE2s
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-23
Authors: Yue, C., Liu, P.
PDB entry 8whv: Spike Trimer of BA.2.86 with three RBDs down
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-09-23
Authors: Yue, C., Liu, P.
PDB entry 8whw: Spike Trimer of BA.2.86 with single RBD up
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2023-09-23
Authors: Yue, C., Liu, P.
PDB entry 8whx: Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-23
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8why: Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-09-23
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8whz: BA.2.86 RBD in complex with hACE2 (local refinement)
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2023-09-23
Authors: Yue, C., Liu, P.
PDB entry 8wi0: wt-hMRP5 inward-open
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-09-24
Authors: Liu, Z.M., Huang, Y.
PDB entry 8wi1: Durio zibethinus trypsin inhibitor DzTI-8
Classification: PLANT PROTEIN
Source organism: Durio zibethinus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-24
Authors: Deentanya, P., Wangkanont, K.
PDB entry 8wi2: RD-hMRP5-inward open
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.06 Å
Deposited: 2023-09-24
Authors: Liu, Z.M., Huang, Y.
PDB entry 8wi3: ND-hMRP5-inward open
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2023-09-24
Authors: Liu, Z.M., Huang, Y.
PDB entry 8wi4: m6-hMRP5 inward open
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-24
Authors: Liu, Z.M., Huang, Y.
PDB entry 8wi5: M5PI-bound hMRP5
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-09-24
Authors: Liu, Z.M., Huang, Y.
PDB entry 8wi6: Crystal structure of AtHPPD-ZSM824 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.916 Å
Deposited: 2023-09-24
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8wi7: Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-24
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8wi8: Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-09-24
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8wi9: Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-24
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8wia: Crystal structure of E. coli ThrS catalytic domain mutant G463S
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-09-24
Authors: Qiao, H., Wang, Z., Wang, J., Fang, P.
PDB entry 8wib: Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-24
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8wic: Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-24
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8wid: Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-24
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8wie: Peptide 10-1/FTH1-1 Complex
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-24
Authors: Fu, D., Wang, M., Guo, Y.
PDB entry 8wif: Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-24
Authors: Kumar, N., Sharma, S., Kaushal, P.S.
PDB entry 8wig: Crystal structure of E. coli ThrS catalytic domain mutant G463S/Q484A
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2023-09-24
Authors: Qiao, H., Wang, Z., Wang, J., Fang, P.
PDB entry 8wih: Crystal structure of E. coli ThrS catalytic domain mutant G463A in complex with ATP
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-09-24
Authors: Qiao, H., Wang, Z., Wang, J., Fang, P.
PDB entry 8wii: Crystal structure of E. coli ThrS catalytic domain mutant G463A in complex with Obafluorin
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2023-09-24
Authors: Qiao, H., Wang, Z., Wang, J., Fang, P.
PDB entry 8wij: Crystal structure of E. coli ThrS catalytic domain mutant L489M in complex with Obafluorin
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2023-09-24
Authors: Qiao, H., Wang, Z., Wang, J., Fang, P.
PDB entry 8wik: Crystal structure of human FSP1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-24
Authors: Feng, S., Huang, X., Tang, D., Qi, S.
PDB entry 8wil: Crystal structure of Jingmen tick virus RNA-dependent RNA polymerase (D55 construct)
Classification: TRANSFERASE
Source organism: Jingmen tick virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-24
Authors: Wang, X., Jing, X., Deng, F., Gong, P.
PDB entry 8wim: Crystal structure of Jingmen tick virus RNA-dependent RNA polymerase (D307 construct)
Classification: TRANSFERASE
Source organism: Jingmen tick virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-09-24
Authors: Wang, X., Jing, X., Deng, F., Gong, P.
PDB entry 8win: Durio zibethinus trypsin inhibitor DzTI-12
Classification: PLANT PROTEIN
Source organism: Durio zibethinus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-09-25
Authors: Deentanya, P., Wangkanont, K.
PDB entry 8wio: Durio zibethinus trypsin inhibitor DzTI-10
Classification: PLANT PROTEIN
Source organism: Durio zibethinus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2023-09-25
Authors: Deentanya, P., Wangkanont, K.
PDB entry 8wip: Crystal Structure of Pseudomonas aeruginosa SuhB in its apo form.
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-09-25
Authors: Yadav, V.K., Maji, S., Shukla, M., Bhattacharyya, S.
PDB entry 8wiq: NCOA4/FTH1 complex
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2023-09-25
Authors: Fu, D., Wang, M., Guo, Y.
PDB entry 8wis: Structure of hemagglutinin from Asiatic toad influenza-like virus complexed with human receptor analog LSTc
Classification: VIRAL PROTEIN
Source organism: Wuhan asiatic toad influenza virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-09-25
Authors: Zhang, D., Xie, Y.F.
PDB entry 8wiu: Bromodomain and Extra-terminal Domain (BET) BRD4
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-25
Authors: Cao, D., Zhiyan, D., Xiong, B.
PDB entry 8wiv: Cryo-EM structure of a bacterial protein
Classification: IMMUNE SYSTEM
Source organism: Paenibacillus sp. 453mf
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-09-25
Authors: Yu, G., Liao, F., Li, X., Li, Z., Zhang, H.
PDB entry 8wiw: Cryo-EM structure of the flagellar C ring in the CW state
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2023-09-25
Authors: Tan, J.X., Zhang, L., Zhou, Y., Zhu, Y.Q.
PDB entry 8wix: cryo-EM structure of alligator haemoglobin in carbonmonoxy form
Classification: OXYGEN BINDING
Source organism: Alligator mississippiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2023-09-25
Authors: Takahashi, K., Lee, Y., Fago, A., Bautista, N.M., Kawamoto, A., Kurisu, G., Storz, J., Nishizawa, T., Tame, J.R.H.
PDB entry 8wiy: cryo-EM structure of alligator haemoglobin in oxy form
Classification: OXYGEN BINDING
Source organism: Alligator mississippiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2023-09-25
Authors: Takahashi, K., Lee, Y., Fago, A., Bautista, N.M., Kawamoto, A., Kurisu, G., Storz, J., Nishizawa, T., Tame, J.R.H.
PDB entry 8wiz: cryo-EM structure of alligator haemoglobin in deoxy form
Classification: OXYGEN BINDING
Source organism: Alligator mississippiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-09-25
Authors: Takahashi, K., Lee, Y., Fago, A., Bautista, N.M., Kawamoto, A., Kurisu, G., Storz, J., Nishizawa, T., Tame, J.R.H.
PDB entry 8wj0: cryo-EM structure of human haemoglobin in carbonmonoxy form
Classification: OXYGEN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2023-09-25
Authors: Takahashi, K., Lee, Y., Fago, A., Bautista, N.M., Kawamoto, A., Kurisu, G., Storz, J., Nishizawa, T., Tame, J.R.H.
PDB entry 8wj1: cryo-EM structure of human haemoglobin in oxy form
Classification: OXYGEN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2023-09-25
Authors: Takahashi, K., Lee, Y., Fago, A., Bautista, N.M., Kawamoto, A., Kurisu, G., Storz, J., Nishizawa, T., Tame, J.R.H.
PDB entry 8wj2: cryo-EM structure of human haemoglobin in deoxy form
Classification: OXYGEN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2023-09-25
Authors: Takahashi, K., Lee, Y., Fago, A., Bautista, N.M., Kawamoto, A., Kurisu, G., Storz, J., Nishizawa, T., Tame, J.R.H.
PDB entry 8wj3: Cryo-EM structure of a bacterial protein
Classification: IMMUNE SYSTEM
Source organism: Paenibacillus sp. 453mf
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-09-25
Authors: Yu, G., Liao, F., Li, X., Li, Z., Zhang, H.
PDB entry 8wj5: Double-wing domain of E. coli YdcD
Classification: UNKNOWN FUNCTION
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-25
Authors: Kamata, K., Tame, J.R.H.
PDB entry 8wjb: Structural insights into the Langya virus attachment glycoprotein
Classification: VIRAL PROTEIN
Source organism: Henipavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-09-25
Authors: Jun, L., Chenghai, W.
PDB entry 8wjc: Structure of AcrIIA7 complexed with 3'3'-cGAMP
Classification: VIRAL PROTEIN
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-09-25
Authors: Xiao, Y., Feng, Y.
PDB entry 8wjd: Structure of SptTad2 complexed with cGG
Classification: VIRAL PROTEIN
Source organism: Sphingobacterium thalpophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-09-25
Authors: Xiao, Y., Feng, Y.
PDB entry 8wje: Structure of apo-SPO1 Tad2
Classification: VIRAL PROTEIN
Source organism: Bacillus phage SPO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-09-25
Authors: Xiao, Y., Feng, Y.
PDB entry 8wjf: Peptide 10/FTH1 complex
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.02 Å
Deposited: 2023-09-25
Authors: Fu, D., Wang, M., Guo, Y.
PDB entry 8wjg: Cryo-EM structure of URAT1(R477S)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-25
Authors: Qian, H.W., He, J.J.
PDB entry 8wjh: Cryo-EM structure of OAT4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-26
Authors: Qian, H.W., He, J.J.
PDB entry 8wjl: Cryo-EM structure of 6-subunit Smc5/6 hinge region
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.15 Å
Deposited: 2023-09-26
Authors: Li, Q., Zhang, J., Zhang, X., Cheng, T., Wang, Z., Jin, D., Chen, Z., Wang, L.
PDB entry 8wjn: Cryo-EM structure of 6-subunit Smc5/6 head region
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.58 Å
Deposited: 2023-09-26
Authors: Li, Q., Zhang, J., Zhang, X., Cheng, T., Wang, Z., Jin, D., Chen, Z., Wang, L.
PDB entry 8wjo: Cryo-EM structure of 8-subunit Smc5/6 arm region
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.04 Å
Deposited: 2023-09-26
Authors: Li, Q., Zhang, J., Zhang, X., Cheng, T., Wang, Z., Jin, D., Chen, Z., Wang, L.
PDB entry 8wjq: Cryo-EM structure of URAT1(R477S)-Urate complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-09-26
Authors: Qian, H.W., He, J.J.
PDB entry 8wjr: Cryo-EM structure of the MS ring (C34) within the flagellar motor-hook complex in the CW state
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-26
Authors: Tan, J.X., Zhang, L., Zhou, Y., Zhu, Y.Q.
PDB entry 8wjw: Aldo-keto reductase KmAKR-W297H/Y296W
Classification: OXIDOREDUCTASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-26
Authors: Xu, S.Y., Zhou, L., Xu, Y., Wang, Y.J., Zheng, Y.G.
PDB entry 8wjx: ADP-bound purinergic receptor 1 in complex with miniGs/q
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-26
Authors: Gu, Q.C., Tang, W.Q.
PDB entry 8wjy: PKMYT1_Cocrystal_Cpd 4
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-09-26
Authors: Wang, Y., Wang, C., Liu, T., Qi, H., Chen, S., Cai, X., Zhang, M., Aliper, A., Ren, F., Ding, X., Zhavoronkov, A.
PDB entry 8wjz: Crystal structure of AtHPPD-F419Y+Y13161 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.606 Å
Deposited: 2023-09-26
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8wk0: Cryo-EM structure of a bacterial protein
Classification: IMMUNE SYSTEM
Source organism: Paenibacillus sp. 453mf
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2023-09-26
Authors: Yu, G., Liao, F., Li, X., Li, Z., Zhang, H.
PDB entry 8wk1: Bovine trypsin in complex with Durio zibethinus trypsin inhibitor DzTI-4
Classification: PLANT PROTEIN
Source organism: Bos taurus; Durio zibethinus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-26
Authors: Deentanya, P., Wangkanont, K.
PDB entry 8wk2: Crystal structure of AtHPPD-F419Y+Y13287 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.806 Å
Deposited: 2023-09-26
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8wk3: Cryo-EM structure of the proximal rod-export apparatus and FlgF within the motor-hook complex in the CW state
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-26
Authors: Tan, J.X., Zhang, L., Zhou, Y., Zhu, Y.Q.
PDB entry 8wk4: Cryo-EM structure of the MS ring with FlgB and FliE within the flagellar motor-hook complex in the CW state.
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-27
Authors: Tan, J.X., Zhang, L., Zhou, Y., Zhu, Y.Q.
PDB entry 8wk5: Aldo-keto reductase KmAKR-Y28A/K29H/Y296W/W297H
Classification: OXIDOREDUCTASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-09-27
Authors: Xu, S.Y., Zhou, L., Xu, Y., Wang, Y.J., Zheng, Y.G.
PDB entry 8wk6: Human AGT1-rBAT complex in the apo-state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-09-27
Authors: Yan, R.H., Shi, T.H., Dong, J.
PDB entry 8wk7: Aldo-keto reductase KmAKR - Y28A/K29H/T63M/Y296W/W297H
Classification: OXIDOREDUCTASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-09-27
Authors: Xu, S.Y., Zhou, L., Xu, Y., Wang, Y.J., Zheng, Y.G.
PDB entry 8wk9: Aldo-keto reductase KmAKR - Y28A/K29H/T63M/Q213A/Y296W/W297H
Classification: OXIDOREDUCTASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-09-27
Authors: Xu, S.Y., Zhou, L., Xu, Y., Wang, Y.J., Zheng, Y.G.
PDB entry 8wka: Aldo-keto reductase KmAKR - T23V/Y28A/K29H/T63M/Q213A/Y296W/W297H
Classification: OXIDOREDUCTASE
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-09-27
Authors: Xu, S.Y., Zhou, L., Xu, Y., Wang, Y.J., Zheng, Y.G.
PDB entry 8wkb: Durio zibethinus trypsin inhibitor DzTI-7
Classification: PLANT PROTEIN
Source organism: Durio zibethinus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-09-27
Authors: Deentanya, P., Wangkanont, K.
PDB entry 8wkc: Crystal structure of OgBVMO(Oceanicola granulosus)
Classification: OXIDOREDUCTASE
Source organism: Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 / HTCC2516)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-27
Authors: Du, Y., Wang, Y.H.
PDB entry 8wkd: Connectase T1A C192S mutant from Methanocaldococcus mazei with peptide substrate
Classification: LIGASE
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-09-27
Authors: Chong, H.C., Wu, B.
PDB entry 8wke: Sulfate-bound SARS-CoV-2 Nsp9
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-09-27
Authors: Chen, P.J., Huang, H.Y., Hsiao, W.C., Huang, C.Y.
PDB entry 8wkf: Rational Design of Highly Selective PDE5 inhibitors for the Treatment of Idiopathic Pulmonary Fibrosis
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-09-27
Authors: Zhang, F.C., Huang, Y.Y.
PDB entry 8wkg: Rational Design of Highly Selective PDE5 inhibitors for the Treatment of Idiopathic Pulmonary Fibrosis
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-09-27
Authors: Zhang, F.C., Huang, Y.Y.
PDB entry 8wkh: Crystal structure of group 13 allergen from Blomia tropicalis
Classification: ALLERGEN
Source organism: Blomia tropicalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-27
Authors: Zhu, K.L., Gong, Y., Cui, Y.B.
PDB entry 8wki: Cryo-EM structure of the distal rod-hook within the flagellar motor-hook complex in the CW state.
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-27
Authors: Tan, J.X., Zhang, L., Zhou, Y., Zhu, Y.Q.
PDB entry 8wkj: The crystal structure of aspartate aminotransferases Lpg0070 from Legionella pneumophila
Classification: TRANSFERASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-27
Authors: Gao, Y.S., Hua, L., Xie, R.
PDB entry 8wkk: Cryo-EM structure of the whole rod with export apparatus and hook within the flagellar motor-hook complex in the CW state.
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-28
Authors: Tan, J.X., Zhang, L., Zhou, Y., Zhu, Y.Q.