LiteFold/PDB huggingface dataset:
PDB entry 7mcf: CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH 2-{3-(1,4-dimethyl-1H-1,2,3-triazol-5-yl)-6-fluoro-5-[(S)-(3-fluoropyridin-2-yl)(oxan-4-yl)methyl]-5H-pyrido[3,2-b]indol-7-yl}propan-2-ol
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2021-04-02
Authors: Sheriff, S.
PDB entry 7mch: Crystal structure of a single-chain E/F type bilin lyase-isomerase MpeQ in space group C2221
Classification: LYASE
Source organism: Synechococcus sp. A15-62
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2021-04-02
Authors: Yang, X., Kumarapperuma, I.
PDB entry 7mci: MoFe protein from Azotobacter vinelandii with a sulfur-replenished cofactor
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-04-02
Authors: Kang, W., Lee, C., Hu, Y., Ribbe, M.W.
PDB entry 7mcj: Crystal Structure of S-adenosylmethionine-dependent methyltransferase UmaA from Mycobacterium tuberculosis in complex with compound 8918
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-02
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7mck: Structure of CHK1 10-pt. mutant complex with LRRK2 inhibitor 18
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-04-02
Authors: Palte, R.
PDB entry 7mcl: Crystal structure of Staphylococcus aureus Cystathionine gamma-lyase, PLP bound
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mcm: Crystal Structure of Enoyl-CoA hydratase from Mycolicibacterium smegmatis
Classification: LYASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-04-02
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7mcn: Crystal structure of Staphylococcus aureus Cystathionine gamma-lyase, Holoenzyme with High HEPES
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mco: Crystal Structure of Tetur04g02350
Classification: TRANSFERASE
Source organism: Tetranychus urticae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-04-02
Authors: Danehsian, L., Kluza, A., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.
PDB entry 7mcp: Crystal structure of Staphylococcus aureus Cystathionine gamma-lyase, Holoenzyme dimer
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mcq: Crystal structure of Staphylococcus aureus Cystathionine gamma lyase, AOAA-bound enzyme in dimeric form
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mcr: Human Apex/Ref1 homodimer formed under oxidative condition
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-04-02
Authors: Nam, Y.W., Yang, S.
PDB entry 7mcs: Cryo-electron microscopy structure of TnsC(1-503)A225V bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2021-04-02
Authors: Shen, Y., Ortega, J., Guarne, A.
PDB entry 7mct: Crystal structure of Staphylococcus aureus Cystathionine gamma lyase, Holoenzyme with bound NL1
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mcu: Crystal structure of Staphylococcus aureus Cystathionine gamma lyase, Holoenzyme with bound NL2
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mcy: Crystal structure of Staphylococcus aureus Cystathionine gamma lyase, Holoenzyme with bound NL3
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7md0: Crystal structure of Staphylococcus aureus cystathionine gamma lyase holoenzyme in the presence of NL1F3
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7md1: Crystal structure of Staphylococcus aureus cystathionine gamma lyase holoenzyme Y103N mutant
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-04-02
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7md2: The F1 region of ammocidin-bound Saccharomyces cerevisiae ATP synthase
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-04-03
Authors: Guo, H., Rubinstein, J.L.
PDB entry 7md3: The F1 region of apoptolidin-bound Saccharomyces cerevisiae ATP synthase
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-04-03
Authors: Guo, H., Rubinstein, J.L.
PDB entry 7md4: Insulin receptor ectodomain dimer complexed with two IRPA-3 partial agonists
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2021-04-03
Authors: Gomez-Llorente, Y., Zhou, H., Scapin, G.
PDB entry 7md5: Insulin receptor ectodomain dimer complexed with two IRPA-9 partial agonists
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2021-04-03
Authors: Gomez-Llorente, Y., Zhou, H., Scapin, G.
PDB entry 7md6: Crystal structure of Staphylococcus aureus cystathionine gamma lyase holoenzyme Y103N mutant co-crystallized with NL1
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-04-03
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7md7: Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12); Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-04-03
Authors: Chen, C.-W., Pavlova, J.A., Lukianov, D.A., Tereshchenkov, A.G., Makarov, G.I., Khairullina, Z.Z., Tashlitsky, V.N., Paleskava, A., Konevega, A.L., Bogdanov, A.A., Osterman, I.A., Sumbatyan, N.V., Polikanov, Y.S.
PDB entry 7md8: Crystal structure of Staphylococcus aureus cystathionine gamma lyase holoenzyme Y103N mutant co-crystallized with NL2
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2021-04-03
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7md9: Crystal structure of Staphylococcus aureus cystathionine gamma lyase holoenzyme Y103A mutant
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-03
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mda: Crystal structure of Staphylococcus aureus cystathionine gamma lyase holoenzyme Y103A mutant co-crystallized with NL1
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2021-04-03
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mdb: Crystal structure of Staphylococcus aureus cystathionine gamma lyase holoenzyme Y103A mutant co-crystallized with NL2
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-03
Authors: Nuthanakanti, A., Serganov, A., Kaushik, A.
PDB entry 7mdc: Full-length wildtype ClbP inhibited by hexanoyl-D-asparagine boronic acid
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-04-03
Authors: Velilla, J.A., Volpe, M.R., Gaudet, R.
PDB entry 7mde: Full-length S95A ClbP
Classification: HYDROLASE
Source organism: Escherichia coli CFT073
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-04-04
Authors: Velilla, J.A., Volpe, M.R., Gaudet, R.
PDB entry 7mdf: Full-length S95A ClbP bound to N-acyl-D-asparagine analog
Classification: HYDROLASE/INHIBITOR
Source organism: Escherichia coli CFT073
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-04-04
Authors: Velilla, J.A., Volpe, M.R., Gaudet, R.
PDB entry 7mdh: STRUCTURAL BASIS FOR LIGHT ACITVATION OF A CHLOROPLAST ENZYME. THE STRUCTURE OF SORGHUM NADP-MALATE DEHYDROGENASE IN ITS OXIDIZED FORM
Classification: CHLOROPLASTIC MALATE DEHYDROGENASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1999-02-16
Authors: Johansson, K., Ramaswamy, S., Saarinen, M., Lemaire-Chamley, M., Issakidis-Bourguet, E., Miginiac-Maslow, M., Eklund, H.
PDB entry 7mdi: Structure of the Neisseria gonorrhoeae ribonucleotide reductase in the inactive state
Classification: OXIDOREDUCTASE
Source organism: Neisseria gonorrhoeae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2021-04-05
Authors: Levitz, T.S., Drennan, C.L., Brignole, E.J.
PDB entry 7mdj: The structure of KcsA in complex with a synthetic Fab
Classification: MEMBRANE PROTEIN
Source organism: Streptomyces lividans; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2021-04-05
Authors: Rohaim, A., Slezak, T., Blackowicz, L., Kossiakoff, A., Roux, B.
PDB entry 7mdl: High-resolution crystal structure of human SepSecS-tRNASec complex
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2021-04-05
Authors: Puppala, A., French, R.L., Simonovic, M.
PDB entry 7mdm: Structure of human p97 ATPase L464P mutant
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.86 Å
Deposited: 2021-04-05
Authors: Zhang, X., Gui, L., Li, S., Nandi, P., Columbres, R.C., Wong, D.E., Moen, D.R., Lin, H.J., Chiu, P.-L., Chou, T.-F.
PDB entry 7mdn: Histone-lysine N-methyltransferase NSD2-PWWP1 with compound MRT10241866a
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2021-04-05
Authors: Lei, M., Freitas, R.F., Dong, A., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
PDB entry 7mdo: Structure of human p97 ATPase L464P mutant
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2021-04-05
Authors: Zhang, X., Gui, L., Li, S., Nandi, P., Columbres, R.C., Wong, D.E., Moen, D.R., Lin, H.J., Chiu, P.-L., Chou, T.-F.
PDB entry 7mdp: KRas G12C in complex with G-2897
Classification: HYDROLASE/Immune System
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2021-04-05
Authors: Oh, A., Frank, Y., Wang, W.
PDB entry 7mds: Crystal structure of AtDHDPS1 in complex with MBDTA-2
Classification: LYASE/LYASE INHIBITOR
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.295 Å
Deposited: 2021-04-06
Authors: Hall, C.J., Soares da Costa, T.P., Panjikar, S.
PDB entry 7mdt: BG505 SOSIP.v5.2 in complex with the monoclonal antibody Rh4O9.8 (as Fab fragment)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-04-06
Authors: Antanasijevic, A., Ozorowski, G., Nogal, B., Ward, A.B.
PDB entry 7mdu: BG505 SOSIP MD39 in complex with the monoclonal antibodies Rh.33104 mAb.1 and RM20A3
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-04-06
Authors: Antanasijevic, A., Ward, A.B.
PDB entry 7mdw: CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb105
Classification: VIRAL PROTEIN/Immune System
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2021-04-06
Authors: Huang, W., Taylor, D.J.
PDB entry 7mdx: LolCDE nucleotide-free
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-04-06
Authors: Sharma, S., Liao, M.
PDB entry 7mdy: LolCDE nucleotide-bound
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-04-06
Authors: Sharma, S., Liao, M.
PDB entry 7mdz: 80S rabbit ribosome stalled with benzamide-CHX
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-04-06
Authors: Koga, Y., Hoang, E.M., Park, Y., Keszei, A.F.A., Murray, J., Shao, S., Liau, B.B.
PDB entry 7me0: Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 6.0
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2021-04-06
Authors: Godoy, A.S., Song, Y., Nakamura, A.M., Noske, G.D., Gawriljuk, V.O., Fernandes, R.S., Oliva, G.
PDB entry 7me1: YfeA oligomer crystal 1, form 1
Classification: METAL TRANSPORT
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-04-06
Authors: Radka, C.D., Aller, S.G.
PDB entry 7me2: YfeA oligomer crystal 2, form 2
Classification: METAL TRANSPORT
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-04-06
Authors: Radka, C.D., Aller, S.G.
PDB entry 7me3: YfeA oligomer crystal 3, form 2
Classification: METAL TRANSPORT
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-04-06
Authors: Radka, C.D., Aller, S.G.
PDB entry 7me4: Structure of the extracellular WNT-binding module in Drosophila Ror2/Nrk
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-04-06
Authors: Mendrola, J.M., Shi, F., Perry, K., Stayrook, S.E., Lemmon, M.A.
PDB entry 7me5: Structure of the extracellular WNT-binding module in Drl-2
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-04-06
Authors: Shi, F., Mendrola, J.M., Perry, K., Stayrook, S.E., Lemmon, M.A.
PDB entry 7me6: Structure of the apo form of YcnI
Classification: METAL BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.053 Å
Deposited: 2021-04-06
Authors: Damle, M., Fisher, O.S.
PDB entry 7me7: CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb17 and Nb105
Classification: VIRAL PROTEIN/Immune System
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2021-04-06
Authors: Huang, W., Taylor, D.J.
PDB entry 7me8: The internal aldimine form of the wild-type Salmonella Typhimurium Tryptophan Synthase in complex with N-(4'-trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor at the beta-site, sodium ion at the metal coordination site and dual beta-Q114 rotamer conformation at 1.60 Angstrom resolution
Classification: LYASE
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-04-06
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7me9: CDD-1 beta-lactamase in imidazole/MPD 30 seconds avibactam complex
Classification: HYDROLASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7mea: CDD-1 beta-lactamase in imidazole/MPD 1 minute avibactam complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7meb: CDD-1 beta-lactamase in imidazole/MPD 2 minute avibactam complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7mec: CDD-1 beta-lactamase in imidazole/MPD 4 minute avibactam complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7med: CDD-1 beta-lactamase in imidazole/MPD 5 minute avibactam complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7mee: CDD-1 beta-lactamase in imidazole/MPD 6 minute avibactam complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7mef: CDD-1 beta-lactamase in imidazole/MPD 10 minute avibactam complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7meg: CDD-1 beta-lactamase in imidazole/MPD 30 minute avibactam complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7meh: CDD-1 beta-lactamase in imidazole/MPD 60 minute avibactam complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-06
Authors: Smith, C.A., Vakulenko, S.B.
PDB entry 7mei: Composite structure of EC+EC
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2021-04-06
Authors: Yang, C., Murakami, K.
PDB entry 7mej: CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb36
Classification: VIRAL PROTEIN/Immune System
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2021-04-06
Authors: Huang, W., Taylor, D.J.
PDB entry 7mek: Structure of copper bound to Ycnl
Classification: METAL BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2021-04-06
Authors: Damle, M., Fisher, O.S.
PDB entry 7mel: Sco GlgEI-V279S in complex with 4-alpha-glucoside of validamine
Classification: TRANSFERASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-04-06
Authors: Jayasinghe, T.D., Ronning, D.R.
PDB entry 7mem: CryoEM structure of monoclonal Fab 045-09 2B05 binding the lateral patch of influenza virus H1 HA
Classification: Viral protein/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (strain swl A/California/04/2009 H1N1)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-04-06
Authors: Han, J., Ward, A.
PDB entry 7mep: BG505 SOSIP.v5.2(7S) in complex with the monoclonal antibodies Rh.33172 mAb.1 and RM19R
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-04-07
Authors: Antanasijevic, A., Ward, A.B.
PDB entry 7meq: Crystal structure of human TMPRSS2 in complex with Nafamostat
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-04-07
Authors: Fraser, B., Beldar, S., Hutchinson, A., Li, Y., Seitova, A., Edwards, A.M., Benard, F., Arrowsmith, C.H., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 7mer: Structure of ALDH4A1 complexed with trans-4-Hydroxy-L-proline
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-04-07
Authors: Bogner, A.N., Stiers, K.M., Tanner, J.J.
PDB entry 7mes: Structure of ALDH4A1 complexed with trans-4-Hydroxy-D-proline
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2021-04-07
Authors: Bogner, A.N., Stiers, K.M., Tanner, J.J.
PDB entry 7met: A. baumannii MsbA in complex with TBT1 decoupler
Classification: MEMBRANE PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2021-04-07
Authors: Thelot, F., Liao, M.
PDB entry 7meu: A biphenyl inhibitor of eIF4E targeting an internal binding site enables the design of cell-permeable PROTAC-degraders
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2021-04-07
Authors: Papadopoulos, E.
PDB entry 7mev: Human Apex/Ref1 monomer with C138A mutation
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-04-07
Authors: Nam, Y.W., Yang, S.
PDB entry 7mew: E. coli MsbA in complex with G247
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain B / BL21-DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-04-08
Authors: Thelot, F., Liao, M.
PDB entry 7mex: Structure of yeast Ubr1 in complex with Ubc2 and N-degron
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2021-04-08
Authors: Pan, M., Zheng, Q., Wang, T., Liang, L., Yu, Y., Liu, L., Zhao, M.
PDB entry 7mey: Structure of yeast Ubr1 in complex with Ubc2 and monoubiquitinated N-degron
Classification: TRANSFERASE
Source organism: Homo sapiens; Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2021-04-08
Authors: Pan, M., Zheng, Q., Wang, T., Liang, L., Yu, Y., Liu, L., Zhao, M.
PDB entry 7mez: Structure of the phosphoinositide 3-kinase p110 gamma (PIK3CG) p101 (PIK3R5) complex
Classification: TRANSFERASE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2021-04-08
Authors: Burke, J.E., Dalwadi, U., Rathinaswamy, M.K., Yip, C.K.
PDB entry 7mf0: Co-crystal structure of PERK with inhibitor (R)-2-amino-N-cyclopropyl-5-(4-(2-(3,5-difluorophenyl)-2-hydroxyacetamido)-2-methylphenyl)nicotinamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.809 Å
Deposited: 2021-04-08
Authors: Wiens, B., Koszelak-Rosenblum, M., Surman, M.D., Zhu, G., Mulvihill, M.J.
PDB entry 7mf1: Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody 47D1
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.092 Å
Deposited: 2021-04-08
Authors: Yuan, M., Zhu, X., Wilson, I.A.
PDB entry 7mf3: Structure of the autoinhibited state of smooth muscle myosin-2
Classification: CONTRACTILE PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-04-08
Authors: Heissler, S.M., Arora, A.S., Billington, N., Sellers, J.R., Chinthalapudi, K.
PDB entry 7mf4: Crystal structure of Trypanosoma cruzi cytosolic Malic Enzyme
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-04-08
Authors: Ranzani, A.T., Cordeiro, A.T.
PDB entry 7mf7: Crystal structure of antibody 10E8v4-P100gA Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-04-08
Authors: Kwon, Y.D., Kwong, P.D.
PDB entry 7mf8: Crystal structure of antibody 10E8v4-P100fA Fab in space group P6422
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-04-08
Authors: Kwon, Y.D., Kwong, P.D.
PDB entry 7mf9: Crystal structure of antibody 10E8v4-P100fA Fab in space group C2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2021-04-08
Authors: Kwon, Y.D., Kwong, P.D.
PDB entry 7mfa: Crystal structure of antibody 10E8v4-P100fA+P100gA Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-04-08
Authors: Kwon, Y.D., Kwong, P.D.
PDB entry 7mfb: Crystal structure of antibody 10E8v4 Fab - light chain H31F variant
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-04-08
Authors: Kwon, Y.D., Kwong, P.D.
PDB entry 7mfc: Crystal structure of CSF1R in complex with vimseltinib
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-04-08
Authors: Abendroth, J., Davies, D.R., Atkins, K.
PDB entry 7mfd: Autoinhibited BRAF:(14-3-3)2:MEK complex with the BRAF RBD resolved
Classification: SIGNALING PROTEIN/TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2021-04-09
Authors: Martinez Fiesco, J.A., Ping, Z., Durrant, D.E., Morrison, D.K.
PDB entry 7mfe: Autoinhibited BRAF:(14-3-3)2 complex with the BRAF RBD resolved
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2021-04-09
Authors: Martinez Fiesco, J.A., Ping, Z., Durrant, D.E., Morrison, D.K.
PDB entry 7mff: Dimeric (BRAF)2:(14-3-3)2 complex bound to SB590885 Inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2021-04-09
Authors: Martinez Fiesco, J.A., Ping, Z., Durrant, D.E., Morrison, D.K.
PDB entry 7mfg: Cryo-EM structure of the VRC310 clinical trial, vaccine-elicited, human antibody 310-030-1D06 Fab in complex with an H1 NC99 HA trimer
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2021-04-09
Authors: Gorman, J., Kwong, P.D.
PDB entry 7mfh: Crystal structure of BIO-32546 bound mouse Autotaxin
Classification: HYDROLASE/INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-04-09
Authors: Chodaparambil, J.V.
PDB entry 7mfi: Bovine sigma-2 receptor bound to cholesterol
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2021-04-09
Authors: Alon, A., Kruse, A.C.
PDB entry 7mfj: Structural Characterization of Beta Cyanoalanine Synthase from Tetranychus Urticae
Classification: STRUCTURAL PROTEIN
Source organism: Tetranychus urticae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.351 Å
Deposited: 2021-04-09
Authors: Daneshian, L., Schlachter, C., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.
PDB entry 7mfk: Structure of the Clostridium perfringens GH89 in complex with alpha-HNJNAc
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2021-04-09
Authors: Boraston, A.B.
PDB entry 7mfl: Structure of the Clostridium perfringens GH89 in complex with beta-HNJNAc
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-04-09
Authors: Boraston, A.B.
PDB entry 7mfm: Glutamate synthase, glutamate dehydrogenase counter-enzyme complex
Classification: CYTOSOLIC PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2021-04-10
Authors: Jayaraman, V., Lee, D.J., Elad, N., Fraser, J.S., Tawfik, D.S.
PDB entry 7mfn: N-Acetylmannosamine-6-phosphate 2-epimerase E180A from Staphylococcus aureus (strain MRSA USA300)
Classification: ISOMERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-04-10
Authors: Currie, M.J., Dobson, R.C.J.
PDB entry 7mfo: X-ray structure of the L136 Aminotransferase from Acanthamoeba polyphaga mimivirus in the presence of TDP and PMP
Classification: TRANSFERASE
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-04-10
Authors: Ferek, J.D., Thoden, J.B., Holden, H.M.
PDB entry 7mfp: crystal structure of the L136 aminotransferase K185A from acanthamoeba polyphaga mimivirus in the presence of the UDP-viosamine external aldimine
Classification: TRANSFERASE
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-04-10
Authors: Seltzner, C.A., Thoden, J.B., Holden, H.M.
PDB entry 7mfq: crystal structure of the L136 aminotransferase from acanthamoeba polyphaga mimivirus in complex with the TDP-viosamine external aldimine
Classification: TRANSFERASE
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-04-10
Authors: Seltzner, C.A., Thoden, J.B., Holden, H.M.
PDB entry 7mfr: Crystal Structure of a Fab fragment bound to peptide GGM
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.848 Å
Deposited: 2021-04-10
Authors: Sudhamsu, J.
PDB entry 7mfs: N-Acetylmannosamine-6-phosphate 2-epimerase from Staphylococcus aureus (strain MRSA USA300) with substrate and product bound
Classification: ISOMERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2021-04-11
Authors: Currie, M.J., Dobson, R.C.J.
PDB entry 7mft: Glutamate synthase, glutamate dehydrogenase counter-enzyme complex (GudB6-GltA6-GltB6)
Classification: CYTOSOLIC PROTEIN
Source organism: Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-04-11
Authors: Jayaraman, V., Lee, D.J., Elad, N., Fraser, J.S., Tawfik, D.S.
PDB entry 7mfu: Crystal structure of synthetic nanobody (Sb14+Sb68) complexes with SARS-CoV-2 receptor binding domain
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-04-11
Authors: Jiang, J., Ahmad, J., Natarajan, K., Boyd, L.F., Margulies, D.H.
PDB entry 7mfv: Crystal structure of synthetic nanobody (Sb16)
Classification: IMMUNE SYSTEM
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-04-11
Authors: Jiang, J., Ahmad, J., Natarajan, K., Boyd, L.F., Margulies, D.H.
PDB entry 7mfw: Drosophila melanogaster Canoe PDZ domain in complex with Echinoid C-terminal region
Classification: CELL ADHESION
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.104 Å
Deposited: 2021-04-11
Authors: Slep, K.C., Peifer, M., Byrnes, A.E.
PDB entry 7mfx: The Crystal Structure of Q108K:K40H:T53A:R58L:Q38F:Q4F Mutant of HCRBPII Bound with FR1 Chromophore Showing Excited State Intermolecular Proton Transfer
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2021-04-11
Authors: Ghanbarpour, A., Geiger, J.
PDB entry 7mfy: The Crystal Structure of Q108K:K40L:T51V:T53S:R58W:Y19W:A33W:L117E Mutant of HCRBPII Bound with LizFluor
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2021-04-12
Authors: Ghanbarpour, A., Geiger, J.
PDB entry 7mfz: The Crystal Structure of Domain-Swapped Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F Mutant of HCRBPII Bound with LizFluor3 Chromophore Showing Excited State Intermolecular Proton Transfer
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2021-04-12
Authors: Ghanbarpour, A., Geiger, J.
PDB entry 7mg0: Crystal structure of EV-D68 2A protease
Classification: HYDROLASE
Source organism: Human enterovirus D68
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2021-04-12
Authors: Liu, C., Lee, M.-Y., Liu, W., Wang, J.
PDB entry 7mg1: Concanavalin A crystallized without DNA glycoconjugate
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mg2: Concanavalin A crystallized in the presence of Man-8
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mg3: Concanavalin A crystallized in the presence of H2N-ATAT
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mg4: Concanavalin A crystallized in the presence of Gal-ATAT
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mg5: Concanavalin A bound to a DNA glycoconjugate, Man-ATAT
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mg6: Concanavalin A bound to a DNA glycoconjugate, Man-AGCT
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mg7: Concanavalin A bound to a DNA glycoconjugate, Man-GTAC
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mg8: Concanavalin A bound to a DNA glycoconjugate, Man-CGCG
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mg9: Concanavalin A bound to DNA glycoconjugates, Man-TTTT and Man-AAAA
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mga: Concanavalin A bound to a DNA glycoconjugate, Man-AAATTT
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mgb: Concanavalin A bound to a DNA glycoconjugate, A(Man-T)AT
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mgc: Concanavalin A bound to a DNA glycoconjugate, G(Man-T)AC
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mgd: Concanavalin A bound to a DNA glycoconjugate, T(Man-T)TT
Classification: SUGAR BINDING PROTEIN/DNA
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-04-12
Authors: Partridge, B.E., Winegar, P.H., Mirkin, C.A.
PDB entry 7mge: Structure of C9orf72:SMCR8:WDR41 in complex with ARF1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2021-04-12
Authors: Su, M.-Y., Hurley, J.H.
PDB entry 7mgj: TNNI3K complexed with N-methyl-4-(4-(3-(3-(trifluoromethyl) phenyl) ureido) phenoxy)picolinamide
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2021-04-12
Authors: Shewchuk, L.M.
PDB entry 7mgk: TNNI3K complexed with 1-(3,5-dichloro-4-((6-(methylamino)pyrimidin-4-yl)oxy)phenyl)-3-(3-(trifluoromethyl)phenyl)urea
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-04-12
Authors: Shewchuk, L.M.
PDB entry 7mgl: Structure of human TRPML1 with ML-SI3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-04-12
Authors: Schmiege, P., Li, X.
PDB entry 7mgm: Structure of yeast cytoplasmic dynein with AAA3 Walker B mutation bound to Lis1
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-04-12
Authors: Lahiri, I., Reimer, J.M., Leschziner, A.E.
PDB entry 7mgn: Crystal structure of F501H/H506E variant of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) from Xanthobacter autotrophicus
Classification: OXIDOREDUCTASE
Source organism: Xanthobacter autotrophicus PY2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-04-12
Authors: Zadvornyy, O.A., Prussia, G., Peters, J.W.
PDB entry 7mgo: Crystal structure of F501H variant of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) from Xanthobacter autotrophicus
Classification: OXIDOREDUCTASE
Source organism: Xanthobacter autotrophicus Py2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-04-13
Authors: Prussia, G., Zadvornyy, O.A., Peters, J.W.
PDB entry 7mgp: CmcA from Type II Cut MCP
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-04-13
Authors: Ochoa, J.M., Escoto, X., Sawaya, M.R., Yeates, T.O.
PDB entry 7mgq: AICAR transformylase/IMP cyclohydrolase (ATIC) is essential for de novo purine biosynthesis and infection by Cryptococcus neoformans
Classification: STRUCTURAL PROTEIN
Source organism: Cryptococcus neoformans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2021-04-13
Authors: Wizrah, M.S., Chua, S.M.H., Luo, Z., Manik, M.K., Pan, M., Whyte, J.M., Robertson, A.B., Kappler, U., Kobe, B., Fraser, J.A.
PDB entry 7mgr: SARS-CoV-2 main protease in complex with nsp8/9 substrate peptide
Classification: VIRAL PROTEIN, Hydrolase
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2021-04-13
Authors: MacDonald, E.A., Windsor, I.W., Hinshaw, S.M.
PDB entry 7mgs: SARS-CoV-2 main protease in complex with N-terminal autoprocessing substrate
Classification: VIRAL PROTEIN, hydrolase
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2021-04-13
Authors: MacDonald, E.A., Windsor, I.W., Hinshaw, S.M.
PDB entry 7mgt: Ftp from Treponema pallidum bound to an ADP-like inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Treponema pallidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2021-04-13
Authors: Brautigam, C.A., Deka, R., Norgard, M.V.
PDB entry 7mgu: Improved ligand discovery using micro-beam data collection at the edge of protein crystals
Classification: HYDROLASE
Source organism: Hypocrea jecorina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-04-13
Authors: Soares, A.S., Jakoncic, J.
PDB entry 7mgv: Chryseobacterium gregarium RiPP-associated ATP-grasp ligase in complex with ADP, and a leader and core peptide
Classification: LIGASE
Source organism: Chryseobacterium gregarium DSM 19109; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2021-04-13
Authors: Bewley, C.A., Zhao, G., Kosek, D., Dyda, F.
PDB entry 7mgw: 5-HT bound serotonin transporter reconstituted in lipid nanodisc in NaCl in occluded conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-04-13
Authors: Yang, D., Gouaux, E.
PDB entry 7mgx: Structure of EmrE-D3 mutant in complex with monobody L10 and methyl viologen
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2021-04-13
Authors: Kermani, A.A., Stockbridge, R.B.
PDB entry 7mgy: Sco GlgEI-V279S in complex with 4-alpha-glucoside of valienamine
Classification: TRANSFERASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-04-13
Authors: Jayasinghe, T.D., Ronning, D.R.
PDB entry 7mgz: Human CTPS1 bound to UTP, AMPPNP, and glutamine
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-04-14
Authors: Lynch, E.M., Dimattia, M.A., Kollman, J.M.
PDB entry 7mh0: Human CTPS1 bound to CTP
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å
Deposited: 2021-04-14
Authors: Lynch, E.M., Kollman, J.M.
PDB entry 7mh1: Human CTPS2 bound to CTP
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-04-14
Authors: Lynch, E.M., Kollman, J.M.
PDB entry 7mh2: T4GALA Engineered Protein Nanocage
Classification: VIRUS LIKE PARTICLE
Source organism: Quasibacillus thermotolerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2021-04-14
Authors: Andreas, M.P., Jones, J.A., Cristie-David, A.S., Giessen, T.W.
PDB entry 7mh3: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-chlorotyrosine
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-04-14
Authors: Mathews, I., Weaver, J.B., Boxer, S.G.
PDB entry 7mh4: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-bromotyrosine
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2021-04-14
Authors: Mathews, I., Weaver, J., Boxer, S.G.
PDB entry 7mh5: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-iodotyrosine
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-04-14
Authors: Mathews, I., Weaver, J., Boxer, S.G.
PDB entry 7mh6: Structure of EmrE-D3 mutant in complex with monobody L10 in low pH (protonated state)
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-04-14
Authors: Kermani, A.A., Stockbridge, R.B.
PDB entry 7mh7: crystal structure of NAD kinase from Pseudomonas aeruginosa PAO1
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2021-04-14
Authors: Chang, C., Evdokimova, E., Savchenko, A., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7mh8: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-methyltyrosine
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2021-04-14
Authors: Mathews, I., Weaver, J., Boxer, S.G.
PDB entry 7mh9: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-nitrotyrosine
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-04-14
Authors: Mathews, I., Weaver, J., Boxer, S.G.
PDB entry 7mha: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; W252V mutant
Classification: ELECTRON TRANSPORT
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2021-04-14
Authors: Boxer, S.G., Mathews, I.I., Weaver, J.B.
PDB entry 7mhb: Crystal structure of ATP-dependent protease ATPase subunit HslU in complex with Adenosine 5'-diphosphate
Classification: CHAPERONE
Source organism: Brucella abortus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-04-15
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7mhc: Structure of human STING in complex with MK-1454
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2021-04-15
Authors: Lesburg, C.A.
PDB entry 7mhd: Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) binding a competitive inhibitor SBP-7635
Classification: Hydrolase/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2021-04-15
Authors: Aleshin, A.E., Lambert, L., Liddington, R.C., Cosford, N.
PDB entry 7mhe: Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) binding a competitive inhibitor SBP-7957
Classification: HYDROLASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-04-15
Authors: Aleshin, A.E., Lambert, L., Liddington, R.C., Cosford, N.