LiteFold/PDB huggingface dataset:
PDB entry 8q3y: Crystal structure of apo Can2 from Thermoanaerobacter brockii
Classification: DNA BINDING PROTEIN
Source organism: Thermoanaerobacter brockii subsp. finnii Ako-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2023-08-04
Authors: Jungfer, K., Sigg, A., Jinek, M.
PDB entry 8q3z: Crystal structure of cA4-bound Can2 from Thermoanaerobacter brockii
Classification: DNA BINDING PROTEIN
Source organism: Thermoanaerobacter brockii subsp. finnii Ako-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-08-04
Authors: Jungfer, K., Sigg, A., Jinek, M.
PDB entry 8q40: Crystal structure of cA4 activated Can2 in complex with a cleaved DNA substrate
Classification: DNA BINDING PROTEIN
Source organism: Thermoanaerobacter brockii subsp. finnii Ako-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-08-04
Authors: Jungfer, K., Sigg, A., Jinek, M.
PDB entry 8q41: Crystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNA
Classification: DNA BINDING PROTEIN
Source organism: Thermoanaerobacter brockii subsp. finnii Ako-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-08-04
Authors: Jungfer, K., Sigg, A., Jinek, M.
PDB entry 8q42: Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNA
Classification: DNA BINDING PROTEIN
Source organism: Thermoanaerobacter brockii subsp. finnii Ako-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-08-04
Authors: Jungfer, K., Sigg, A., Jinek, M.
PDB entry 8q43: Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNA
Classification: DNA BINDING PROTEIN
Source organism: Thermoanaerobacter brockii subsp. finnii Ako-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2023-08-04
Authors: Jungfer, K., Sigg, A., Jinek, M.
PDB entry 8q44: Crystal structure of cA4-bound Can2 (E364R) in complex with oligo-T DNA
Classification: DNA BINDING PROTEIN
Source organism: Thermoanaerobacter brockii subsp. finnii Ako-1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-04
Authors: Jungfer, K., Sigg, A., Jinek, M.
PDB entry 8q45: Inward-facing, closed proteoliposome complex I at 2.7 A. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-08-05
Authors: Grba, D.N., Hirst, J.
PDB entry 8q46: Inward-facing, open2 proteoliposome complex I at 2.6 A. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-05
Authors: Grba, D.N., Hirst, J.
PDB entry 8q47: Inward-facing, open1 proteoliposome complex I at 2.9 A. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-05
Authors: Grba, D.N., Hirst, J.
PDB entry 8q48: Outward-facing, closed proteoliposome complex I at 2.5 A. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-08-05
Authors: Grba, D.N., Hirst, J.
PDB entry 8q49: Outward-facing, open2 proteoliposome complex I at 2.6 A. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-05
Authors: Grba, D.N., Hirst, J.
PDB entry 8q4a: Outward-facing, open1 proteoliposome complex I at 2.6 A. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-05
Authors: Grba, D.N., Hirst, J.
PDB entry 8q4b: Endothiapepsin in complex with ligand (3R,5R)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)-5-(3-(2-nitrophenyl)-1,2,4-oxadiazol-5-yl)pyrrolidin-3-ol (CBWS-SE-163.1)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-08-05
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q4d: IstA-IstB(E167Q) Strand Transfer Complex
Classification: DNA BINDING PROTEIN
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-08-06
Authors: de la Gandara, A., Spinola-Amilibia, M., Araujo-Bazan, L., Nunez-Ramirez, R., Berger, J.M., Arias-Palomo, E.
PDB entry 8q4e: Structure of Legionella pneumophila Lcl C-terminal domain
Classification: CELL ADHESION
Source organism: Legionella pneumophila 130b
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-06
Authors: Rehman, S., Garnett, J.A.
PDB entry 8q4g: Thin filament from FIB milled relaxed left ventricular mouse myofibrils
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2023-08-06
Authors: Tamborrini, D., Wang, Z., Wagner, T., Tacke, S., Stabrin, M., Grange, M., Kho, A.L., Bennet, P., Rees, M., Gautel, M., Raunser, S.
PDB entry 8q4h: a membrane-bound menaquinol:organohalide oxidoreductase complex RDH complex
Classification: ELECTRON TRANSPORT
Source organism: Desulfitobacterium hafniense TCE1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-08-07
Authors: Dongchun, N., Ekundayo, B., Henning, S., Julien, M., Holliger, C., Cimmino, L.
PDB entry 8q4i: The crystal structure of human chloride intracellular channel protein 5 delta 57-68
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-07
Authors: Manori, B., Giladi, M., Haitin, Y.
PDB entry 8q4j: The crystal structure of human chloride intracellular channel protein 5 delta 57-68 F34D mutant
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-08-07
Authors: Manori, B., Giladi, M., Haitin, Y.
PDB entry 8q4k: Crystal structure of Borrelia burgdorferi BB0158
Classification: MEMBRANE PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-08-07
Authors: Brangulis, K., Tars, K.
PDB entry 8q4l: GBP1 bound by 14-3-3sigma
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.12 Å
Deposited: 2023-08-07
Authors: Pfleiderer, M.M., Liu, X., Fisch, D., Anastasakou, E., Frickel, E.M., Galej, W.P.
PDB entry 8q4m: Crystal structure of YTHDC1 in complex with Compound 25 (ZA_349)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4n: Crystal structure of YTHDC1 in complex with Compound 26 (ZA_513)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4o: RNA G-quadruplex from the 5'-UTR of human tyrosine kinase 2 (TYK2)
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-08-07
Authors: Toplishek, M., Kocman, V.
PDB entry 8q4p: Crystal structure of YTHDC1 in complex with Compound 27 (ZA_309)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4q: Crystal structure of YTHDC1 in complex with Compound 29 (ZA_337)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4r: Crystal structure of YTHDC1 in complex with Compound 30 (ZA_326)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4s: Crystal structure of phosphoserine phosphatase (SerB) from Brucella melitensis in complex with AP4 and magnesium.
Classification: HYDROLASE
Source organism: Brucella melitensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-08-07
Authors: Scaillet, T., Wouters, J.
PDB entry 8q4t: Crystal structure of YTHDC1 in complex with Compound 31 (ZA_400)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4u: Crystal structure of YTHDC1 in complex with Compound 36 (ZA_540b)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4v: Crystal structure of YTHDC1 in complex with Compound 37 (ZA_356)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4w: Crystal structure of YTHDC1 in complex with Compound 40 (CS_3a)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-08-07
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q4y: Beta-galactosidase from Bacillus circulans conformational state 1
Classification: HYDROLASE
Source organism: Niallia circulans
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-08-07
Authors: Kascakova, B., Hovorkova, M., Petraskova, L., Novacek, J., Pinkas, D., Gardian, Z., Kren, V., Bojarova, P., Kuta Smatanova, I.
PDB entry 8q50: Nitrogenase Fe protein from Methanothermococcus thermolithotrophicus, tetragonal crystalline form at 1.91-A resolution
Classification: ELECTRON TRANSPORT
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-08-07
Authors: Maslac, N., Wagner, T.
PDB entry 8q51: Beta-galactosidase from Bacillus circulans conformational state 2
Classification: HYDROLASE
Source organism: Niallia circulans
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-08-07
Authors: Kascakova, B., Hovorkova, M., Petraskova, L., Novacek, J., Pinkas, D., Gardian, Z., Kren, V., Bojarova, P., Kuta Smatanova, I.
PDB entry 8q52: A PBP-like protein built from fragments of different folds
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli K-12; Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-08-08
Authors: Shanmugaratnam, S., Toledo-Patino, S., Goetz, S.K., Farias-Rico, J.A., Hocker, B.
PDB entry 8q53: Crystal structure of truncated human Microtubule-associated proteins 1A/1B light chain 3B (MAP1LC3B) in apo form
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-08-08
Authors: Kumar, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8q54: N5-methyl-H4MPT:CoM methyltransferase -coenzyme M complex + CoM
Classification: TRANSFERASE
Source organism: Methanothermobacter marburgensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2023-08-08
Authors: Aziz, I., Vonck, J., Ermler, U.
PDB entry 8q55: Ternary structure of 14-3-3s, C-RAF phosphopeptide (pS259) and compound 21 (1075354)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-08-08
Authors: Konstantinidou, M., Vickery, H., Pennings, M.A.M., Virta, J., Visser, E.J., Oetelaar, M.C.M., Overmans, M., Neitz, J., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 8q56: PglX methyltransferase of Salmonella BREX phage defence system (aka BrxX) bound to inhibitor Ocr
Classification: DNA BINDING PROTEIN
Source organism: Escherichia phage T7; Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-08-08
Authors: Went, S.C., Blower, T.R.
PDB entry 8q57: Crystal structure of class II SFP aldolase from Yersinia aldovae (YaSqiA-Zn-SO4) with bound sulfate ions
Classification: LYASE
Source organism: Yersinia aldovae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-08
Authors: Sharma, M., Davies, G.J.
PDB entry 8q58: Crystal structure of metal-dependent classII sulfofructosephosphate aldolase (SFPA) from Hafnia paralvei HpSqiA-Zn
Classification: LYASE
Source organism: Hafnia paralvei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-08
Authors: Sharma, M., Davies, G.J.
PDB entry 8q59: Crystal structure of metal-dependent class II sulfofructose phosphate aldolase from Yersinia aldovae in complex with sulfofructose phosphate (YaSqiA-Zn-SFP)
Classification: LYASE
Source organism: Yersinia aldovae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-08
Authors: Sharma, M., Davies, G.J.
PDB entry 8q5a: Crystal structure of metal-dependent class II sulfofructosephosphate aldolase from Hafnia paralvei HpSqiA-Zn in complex with dihydroxyacetone phosphate (DHAP)
Classification: LYASE
Source organism: Hafnia paralvei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-08
Authors: Sharma, M., Davies, G.J.
PDB entry 8q5b: Characterization of the zinc finger u-protein HVO_0758 from Haloferax volcanii: biological roles, zinc binding, and NMR solution structure
Classification: METAL BINDING PROTEIN
Source organism: Haloferax volcanii DS2
Experimental method: SOLUTION NMR
Deposited: 2023-08-08
Authors: Pyper, D.J., Schwalbe, H.
PDB entry 8q5c: Ternary structure of 14-3-3s, C-RAF phosphopeptide (pS259) and compound 12 (1075475)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-08
Authors: Konstantinidou, M., Vickery, H., Pennings, M.A.M., Virta, J., Visser, E.J., Oetelaar, M.C.M., Overmans, M., Neitz, J., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 8q5d: PfRH5 bound to monoclonal antibody MAD10-466
Classification: CELL ADHESION
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-08-08
Authors: Farrell, B., Higgins, M.K.
PDB entry 8q5e: Crystal structure of PpSB1-LOV protein from Pseudomonas putida with covalent FMN
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas putida KT2440
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-08-09
Authors: Rozeboom, H.J., Fraaije, M.W.
PDB entry 8q5f: Crystal structure of miniSOG protein from Arabidopsis thaliana with covalent FMN
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-09
Authors: Rozeboom, H.J., Fraaije, M.W.
PDB entry 8q5g: Crystal structure of nitroreductase from Bacillus tequilensis with covalent FMN
Classification: OXIDOREDUCTASE
Source organism: Bacillus tequilensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-09
Authors: Rozeboom, H.J., Fraaije, M.W.
PDB entry 8q5h: Human KMN network (outer kinetochore)
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-08-09
Authors: Raisch, T., Polley, S., Vetter, I., Musacchio, A., Raunser, S.
PDB entry 8q5i: Structure of Candida albicans 80S ribosome in complex with cephaeline
Classification: RIBOSOME
Source organism: Candida albicans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2023-08-09
Authors: Kolosova, O., Zgadzay, Y., Stetsenko, A., Atamas, A., Guskov, A., Yusupov, M.
PDB entry 8q5j: Cytochrome P450 monooxygenase from Streptomyces scabiei (SscaCYP)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces scabiei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-08-09
Authors: Opperman, D.J., Ebrecht, A.C.
PDB entry 8q5k: PqsR coinducer binding domain of Pseudomonas aeruginosa with ligand 2t : 2-(4-(3-((6-chloro-1-(2-methoxyethyl)-1H-benzo[d]imidazol-2-yl)amino)-2-hydroxypropoxy)phenyl)acetonitrile
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa UCBPP-PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-09
Authors: Markham-Lee, Z.J., Emsley, J.
PDB entry 8q5l: PqsR coinducer binding domain of Pseudomonas aeruginosa with ligand 2f: 2-(4-(3-((6-chloro-1-isopropyl-1H-benzo[d]imidazol-2-yl)amino)-2-hydroxypropoxy)phenyl)acetonitrile
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa UCBPP-PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-08-09
Authors: Markham-Lee, Z.J., Emsley, J.
PDB entry 8q5m: N-terminal domain of restriction endonuclease Eco15I in the absence of DNA.
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2023-08-09
Authors: Rafalski, D., Krakowska, K., Bochtler, M.
PDB entry 8q5n: Apo form of restriction endonuclease NhoI.
Classification: HYDROLASE
Source organism: Nitrolancea hollandica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-08-09
Authors: Rafalski, D., Krakowska, A., Bochtler, M.
PDB entry 8q5o: N-terminal domain of restriction endonuclease Eco15I with tetra-methylated target DNA.
Classification: HYDROLASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-08-09
Authors: Rafalski, D., Krakowska, K., Bochtler, M.
PDB entry 8q5p: Structure of the lysine methyltransferase SETD2 in complex with a peptide derived from human tyrosine kinase ACK1
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.814 Å
Deposited: 2023-08-09
Authors: Mechaly, A., Le Coadou, L., Dupret, J.M., Haouz, A., Rodrigues Lima, F.
PDB entry 8q5q: d(ATTTC)3 dimeric structure
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-08-09
Authors: Trajkovski, M., Pastore, A., Plavec, J.
PDB entry 8q5r: HpARI bound to mouse IL-33
Classification: IMMUNOSUPPRESSANT
Source organism: Heligmosomoides bakeri; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-09
Authors: Jamwal, A., Higgins, M.K.
PDB entry 8q5s: Anaerobic crystal structure of apo-HIF prolyl hydroxylase 2 (PHD2 181-407)in complex with acetate (ACT) and HIF2alpha-CODD peptide
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-08-09
Authors: Fiorini, G., Figg Jr, W.D., Schofield, C.J.
PDB entry 8q5t: Nitrogenase Fe protein from Methanothermococcus thermolithotrophicus, monoclinic crystalline form at 2.31-A resolution
Classification: ELECTRON TRANSPORT
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-08-09
Authors: Maslac, N., Wagner, T.
PDB entry 8q5u: Endoglycosidase S2 in complex with IgG1 Fc
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-08-09
Authors: Sudol, A.S.L., Tews, I., Crispin, M.
PDB entry 8q5v: MgADP-bound Fe protein of the molybdenum nitrogenase from Methanothermococcus thermolithotrophicus
Classification: ELECTRON TRANSPORT
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-08-09
Authors: Maslac, N., Wagner, T.
PDB entry 8q5w: MgADP-bound Fe protein of the molybdenum nitrogenase from Methanocaldococcus infernus
Classification: ELECTRON TRANSPORT
Source organism: Methanocaldococcus infernus ME
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-08-09
Authors: Maslac, N., Wagner, T.
PDB entry 8q5x: MgADP-bound Fe protein of the molybdenum nitrogenase from Methanococcus maripaludis
Classification: ELECTRON TRANSPORT
Source organism: Methanococcus maripaludis S2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-09
Authors: Maslac, N., Wagner, T.
PDB entry 8q5y: cryoEM structure of SARS-CoV2 Spike trimer in complex with Fab23
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-10
Authors: Hallberg, M., Das, H.
PDB entry 8q5z: Crystal structure of bovine Thiosulfate sulfurtransferase
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-08-10
Authors: Goor, H.v., Groves, M.R., AL-Dahmani, Z.M., Wang, C.
PDB entry 8q60: Racemic crystal structure of a synthetic DNA Hairpin with diquinoline linker.
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-10
Authors: Mandal, P.K., Loos, M., Xu, F., Huc, I.
PDB entry 8q61: Co-crystal structure of human AKT2 with compound 3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-08-10
Authors: Harrison, T., Barker, O.
PDB entry 8q62: Early closed conformation of the g-tubulin ring complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2023-08-10
Authors: Llorca, O., Serna, M., Fernandez-Leiro, R.
PDB entry 8q63: Cryo-EM structure of IC8', a second state of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-08-10
Authors: Goovaerts, Q., Shen, J., Patel, S.S., Das, K.
PDB entry 8q64: Crystal structure of hydroxylated HIF2alpha-CODD peptide (523-542) bound to apo-HIF prolyl hydroxylase 2 (PHD2 181-407)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-08-10
Authors: Fiorini, G., Figg Jr, W.D., Schofield, C.J.
PDB entry 8q65: Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP-bound form
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-08-10
Authors: Bulvas, O., Kouba, T., Pichova, I.
PDB entry 8q66: Crystal Structure of the C. elegans MUT-7 MUT-8 CTD complex
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-08-11
Authors: Falk, S., Busetto, V.
PDB entry 8q67: Crystal structure of a homohexameric MCM from M. acidophilum
Classification: REPLICATION
Source organism: Candidatus Mancarchaeum acidiphilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-08-11
Authors: Noble, O.W., Degut, C., Hodgkinson, M.R., Chong, J.P.J., Plevin, M.J.
PDB entry 8q68: Crystal structure of TEAD1-YBD in complex with irreversible compound SWTX-143
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-08-11
Authors: Ciesielski, F., Spieser, S.A.H., Marchand, A., Gwaltney, S.L.
PDB entry 8q69: Crystal structure of HsRNMT complexed with inhibitor DDD1060606
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-08-11
Authors: Petit, A.P., Fyfe, P.K.
PDB entry 8q6a: The RSL-D32N - sulfonato-calix[8]arene complex, I213 form, citrate pH 4.0
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-08-11
Authors: Flood, R.J., Crowley, P.B.
PDB entry 8q6b: The RSL-D32N - sulfonato-calix[8]arene complex, I23 form, citrate pH 4.0, obtained by cross-seeding
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-08-11
Authors: Flood, R.J., Crowley, P.B.
PDB entry 8q6c: The RSL-D32N - sulfonato-calix[8]arene complex, P63 form, acetate pH 4.0
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2023-08-11
Authors: Flood, R.J., Crowley, P.B.
PDB entry 8q6d: Anaerobic crystal structure of HIF prolyl hydroxylase 2 (PHD2 181-407) in complex with HIF2alpha-CODD peptide (523-542), Fe(II) and 2-oxoglutarate (2OG)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-11
Authors: Fiorini, G., Figg Jr, W.D., Schofield, C.J.
PDB entry 8q6e: Aerobic crystal structure of HIF prolyl hydroxylase 2 (PHD2 181-407) in complex with Fe(III), 2-oxoglutarate (2OG) and HIF2alpha-CODD peptide
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-08-11
Authors: Fiorini, G., Figg Jr, W.D., Schofield, C.J.
PDB entry 8q6f: HUMAN PI4KIIIB IN COMPLEX WITH COVALENTLY BOUND INHIBITOR (COMPOUND 4)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.506 Å
Deposited: 2023-08-11
Authors: Somers, D.O.
PDB entry 8q6g: HUMAN PI4KIIIB IN COMPLEX WITH COVALENTLY BOUND INHIBITOR (COMPOUND 8)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.541 Å
Deposited: 2023-08-11
Authors: Somers, D.O.
PDB entry 8q6h: HUMAN PI4KIIIB IN COMPLEX WITH COVALENTLY BOUND INHIBITOR (COMPOUND 11)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-08-11
Authors: Somers, D.O.
PDB entry 8q6i: Cholera holotoxin variant (chimera with E. coli heat-labile enterotoxin, 1 C-terminal substitution)
Classification: TOXIN
Source organism: Vibrio cholerae O1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.603 Å
Deposited: 2023-08-11
Authors: Mojica, N., Cordara, G., Kersten, F., Heim, J.B., Krengel, U.
PDB entry 8q6j: Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-11
Authors: Ruedas, R., Vuillemot, R., Tubiana, T., Winter, J.M., Pieri, L., Arteni, A.A., Samson, C., Jonic, J., Mathieu, M., Bressanelli, S.
PDB entry 8q6k: Human IgD Fab in complex with an orthosteric inhibitor of Phl p 7
Classification: IMMUNE SYSTEM
Source organism: Camelidae mixed library; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-11
Authors: Davies, A.M., Vester, S.K., McDonnell, J.M.
PDB entry 8q6l: human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-08-13
Authors: Angeli, A., Ferraroni, M.
PDB entry 8q6m: Human SOD1 low dose data collecton
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-08-14
Authors: Antonyuk, S.V., Hossain, A., Agar, J.N., Hasnain, S.S.
PDB entry 8q6n: Xanthin riboswitch in complex with oxypurinol
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2023-08-14
Authors: Nar, H.
PDB entry 8q6o: X. laevis CMG dimer bound to dimeric DONSON - without ATPase
Classification: REPLICATION
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-08-14
Authors: Butryn, A., Cvetkovic, M.A., Costa, A.
PDB entry 8q6p: X. laevis CMG dimer bound to dimeric DONSON - MCM ATPase
Classification: REPLICATION
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2023-08-14
Authors: Butryn, A., Cvetkovic, M.A., Costa, A.
PDB entry 8q6q: Structure of human immunity related GTPase Q in complex with GABARAPL2.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-14
Authors: Bailey, H.J., Misra, M., Pomirska, J., Dikic, I.
PDB entry 8q6r: Structure of complement FP in complex with the TPP-3077 VHH
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-14
Authors: Andersen, G.R., Pedersen, D.V.
PDB entry 8q6s: A carbohydrate esterase family 15 (CE15) glucuronoyl esterase from Phocaeicola vulgatus ATCC 8482
Classification: HYDROLASE
Source organism: Phocaeicola vulgatus ATCC 8482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-08-14
Authors: Mazurkewich, S., Seveso, A., Banerjee, S., Lo Leggio, L., Larsbrink, J.
PDB entry 8q6t: Helical reconstruction of the relaxed thick filament from FIB milled left ventricular mouse myofibrils
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 18 Å
Deposited: 2023-08-14
Authors: Tamborrini, D., Raunser, S.
PDB entry 8q6u: Crystal structure of a double mutant acetyltransferase from Bacillus cereus species.
Classification: TRANSFERASE
Source organism: Bacillus cereus ATCC 14579
Experimental method: X-RAY DIFFRACTION
Resolution: 1.516 Å
Deposited: 2023-08-14
Authors: Silvestre, H.L.
PDB entry 8q6v: Cryo-EM structure of S. cerevisiae Rai1-Rat1 dimer.
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-08-15
Authors: Noskova, N., Dikunova, A., Stefl, R.
PDB entry 8q6w: LSSmOrange - Directionality of Optical Properties of Fluorescent Proteins
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-15
Authors: Myskova, J., Brynda, J., Lazar, J.
PDB entry 8q6x: Crystal structure of Cytochrome P450 GymB5 from Streptomyces katrae
Classification: OXIDOREDUCTASE
Source organism: Streptomyces katrae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-08-15
Authors: Freytag, J., Mueller, J.M., Stehle, T., Zocher, G.
PDB entry 8q6y: Crystal structure of Cytochrome P450 GymB5 from Streptomyces katrae in complex with cYY and Hypoxanthine
Classification: OXIDOREDUCTASE
Source organism: Streptomyces katrae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-08-15
Authors: Freytag, J., Mueller, J.M., Stehle, T., Zocher, G.
PDB entry 8q6z: Crystal structure of Cytochrome P450 GymB1 from Streptomyces flavidovirens
Classification: OXIDOREDUCTASE
Source organism: Streptomyces flavidovirens DSM 40150
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-08-15
Authors: Freytag, J., Kelm, T., Stehle, T., Zocher, G.
PDB entry 8q70: tRNA pseudouridine synthase A homodimer
Classification: ISOMERASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-15
Authors: Pacesa, M., Correia, B.E., Levy, E.D.
PDB entry 8q71: Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the inhibitor GC-67
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.322 Å
Deposited: 2023-08-15
Authors: Strater, N., Muller, C.E., Sylvester, K., Weisse, R.H., Useini, A., Gao, S., Song, L., Liu, Z., Zhan, P.
PDB entry 8q72: E. coli plasmid-borne JetABCD(E248A) core in a cleavage-competent state
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.17 Å
Deposited: 2023-08-15
Authors: Roisne-Hamelin, F., Li, Y., Gruber, S.
PDB entry 8q73: Copper-transporting ATPase HMA4 in E1 state apo
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-08-15
Authors: Guo, Z., Gourdon, P., Wang, K.
PDB entry 8q74: Copper-transporting ATPase HMA4 in E1 state with Cu
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-08-15
Authors: Guo, Z., Gourdon, P., Wang, K.
PDB entry 8q75: Copper-transporting ATPase HMA4 in E2P state with AlF
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-15
Authors: Guo, Z., Gourdon, P., Wang, K.
PDB entry 8q76: Copper-transporting ATPase HMA4 in E2P state with BeF
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-08-15
Authors: Guo, Z., Gourdon, P., Wang, K.
PDB entry 8q77: STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA'; CSNK2A2 GENE PRODUCT) IN COMPLEX WITH THE BISUBSTRATE INHIBITOR ARC-780
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.255 Å
Deposited: 2023-08-15
Authors: Werner, C., Lindenblatt, D., Niefind, K.
PDB entry 8q78: Structure of the FP specific VHH TPP-3077
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.225 Å
Deposited: 2023-08-15
Authors: Andersen, G.R., Pedersen, D.V.
PDB entry 8q79: Structure of mBaoJin at pH 6.5
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-08-15
Authors: Samygina, V.R., Subach, O.M., Vlaskina, A.V., Nikolaeva, A.Y., Borshchevsky, V., Qin, W., Subach, F.V.
PDB entry 8q7b: ABCG2 in complex with MZ29 and 5D3 Fab
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2023-08-16
Authors: Kowal, J., Yu, Q., Ni, D., Stahlberg, H., Tajkhorshid, E., Altmann, K.H., Locher, K.P., Manolaridis, I., Jackson, S.M., Taylor, N.M.I., Zechner, M.
PDB entry 8q7c: Cryo-EM structure of Adenovirus C5 hexon
Classification: VIRUS
Source organism: Human adenovirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-16
Authors: Zoll, S., Dhillon, A.
PDB entry 8q7d: Neck of phage 812 after tail contraction (C12)
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-08-16
Authors: Cienikova, Z., Siborova, M., Fuzik, T., Plevka, P.
PDB entry 8q7e: Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-08-16
Authors: Hopf, L.V.M., Horn-Ghetko, D., Schulman, B.A.
PDB entry 8q7f: Tau - AD-MIA5
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2023-08-16
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q7g: Human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol pH 7.0
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-16
Authors: Angeli, A., Ferraroni, M.
PDB entry 8q7h: Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-08-16
Authors: Hopf, L.V.M., Horn-Ghetko, D., Schulman, B.A.
PDB entry 8q7i: PCNA from Chaetomium thermophilum in complex with Fen1 peptide
Classification: REPLICATION
Source organism: Thermochaetoides thermophila DSM 1495; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-08-16
Authors: Alphey, M.S., Wolford, C.B., MacNeill, S.A.
PDB entry 8q7j: Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability
Classification: IMMUNOSUPPRESSANT
Source organism: Tolypocladium inflatum
Experimental method: SOLUTION NMR
Deposited: 2023-08-16
Authors: Ruedisser, S.H., Matabaro, E., Sonderegger, L., Guentert, P., Kuenzler, M., Gossert, A.D.
PDB entry 8q7k: IRGQ LIR2 peptide in complex with LC3B
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-08-16
Authors: Misra, M., Bailey, H.J., Pomirska, J., Dikic, I.
PDB entry 8q7l: Tau - AD-MIA6 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2023-08-16
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q7m: Tau - AD-MIA7 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-08-16
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q7n: cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-16
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Urlaub, H., Stark, H., Luehrmann, R.
PDB entry 8q7o: Crystal structure of the FZD3 cysteine-rich domain in complex with a nanobody (14478)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-08-16
Authors: Hillier, J.S., Zhao, Y., Malinauskas, T., Jones, E.Y.
PDB entry 8q7p: Tau - AD-MIA8 (intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-08-16
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q7q: Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 2)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-16
Authors: Riabov Bassat, D., Plaschka, C., Vorlaender, M.K.
PDB entry 8q7r: Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2023-08-16
Authors: Liwocha, J., Prabu, J.R., Kleiger, G., Schulman, B.A.
PDB entry 8q7s: Crystal structure of the SARS-CoV-2 RBD (Wuhan) with neutralizing VHHs Ma6F06 and Re21H01
Classification: ANTIVIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-16
Authors: Guttler, T., Aksu, M., Gorlich, D.
PDB entry 8q7t: Tau - AD-MIA11
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-08-17
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q7u: Photorhabdus laumondii lectin PLL in complex with alpha-methyl-fucoside
Classification: CELL ADHESION
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-08-17
Authors: Melicher, F., Houser, J., Paulenova, E., Wimmerova, M.
PDB entry 8q7v: Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 1)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-08-17
Authors: Riabov Bassat, D., Plaschka, C., Vorlaender, M.K.
PDB entry 8q7w: Structure of the recycling U5 snRNP bound to chaperone CD2BP2 (State 3)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-08-17
Authors: Riabov Bassat, D., Plaschka, C., Vorlaender, M.K.
PDB entry 8q7x: Structure of the recycling U5 snRNP bound to chaperone CD2BP2 (State 4)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2023-08-17
Authors: Riabov Bassat, D., Plaschka, C., Vorlaender, M.K.
PDB entry 8q7y: ESIBD structure of beta-galactosidase
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-17
Authors: Esser, T., Boehning, J., Bharat, T.A.M., Rauschenbach, S.
PDB entry 8q7z: Structure of the G. gallus 80S non-rotated ribosome
Classification: RIBOSOME
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-08-17
Authors: Nurullina, L., Jenner, L., Yusupov, M.
PDB entry 8q80: Photorhabdus laumondii lectin PLL2 in complex with alpha-methyl-fucoside
Classification: CELL ADHESION
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-17
Authors: Melicher, F., Houser, J., Paulenova, E., Wimmerova, M.
PDB entry 8q81: Photorhabdus laumondii lectin PLL3 in complex with alpha-methyl-fucoside
Classification: CELL ADHESION
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-08-17
Authors: Melicher, F., Houser, J., Paulenova, E., Wimmerova, M.
PDB entry 8q82: Photorhabdus laumondii lectin PLL4 in complex with alpha-methyl-fucoside
Classification: CELL ADHESION
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-08-17
Authors: Melicher, F., Houser, J., Paulenova, E., Wimmerova, M.
PDB entry 8q83: Photorhabdus laumondii lectin PLL5 in complex with alpha-methyl-fucoside
Classification: CELL ADHESION
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.699 Å
Deposited: 2023-08-17
Authors: Melicher, F., Houser, J., Paulenova, E., Wimmerova, M.
PDB entry 8q84: Outer kinetochore Dam1 protomer dimer Ndc80-Nuf2 coiled-coil complex
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-08-17
Authors: Muir, K.W., Barford, D.
PDB entry 8q85: Outer kinetochore Dam1 protomer monomer Ndc80-Nuf2 coiled-coil complex
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2023-08-17
Authors: Muir, K.W., Barford, D.
PDB entry 8q86: Trimer of the dimeric SaPI2 Stl transcriptional regulator
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2023-08-18
Authors: Qiao, C., Debiasi-Anders, G., Mir-Sanchis, I.
PDB entry 8q87: Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1
Classification: RIBOSOME
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-08-18
Authors: Nurullina, L., Jenner, L., Yusupov, M.
PDB entry 8q88: Tau - AD-LIA2 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q89: Crystal structure of Apis mellifera glutathione transferase delta 1 in a covalent dimeric state
Classification: TRANSFERASE
Source organism: Apis mellifera
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-08-18
Authors: Schwartz, M., Neiers, F.
PDB entry 8q8a: Crystal structure of Apis mellifera glutathione transferase delta 1, mutant M126L
Classification: TRANSFERASE
Source organism: Apis mellifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-08-18
Authors: Schwartz, M., Neiers, F.
PDB entry 8q8b: Crystal structure of Apis mellifera glutathione transferase delta 1, mutant C127S
Classification: TRANSFERASE
Source organism: Apis mellifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-08-18
Authors: Schwartz, M., Neiers, F.
PDB entry 8q8c: Tau - AD-MIA10 (intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.92 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8d: Tau - AD-LIA6 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8e: Tau - AD-LIA4 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8f: Tau - AD-LIA5 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8g: Crystal structure of HsRNMT complexed with inhibitor DDD1870799
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-08-18
Authors: Petit, A.P., Fyfe, P.K.
PDB entry 8q8h: Crystal Structure of Apo beta-D-GalNAcase from Niabella aurantiaca (Structure 2)
Classification: HYDROLASE
Source organism: Niabella aurantiaca DSM 17617
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-18
Authors: Morth, J.P., Moreno Prieto, E.S., Siebenhaar, S.
PDB entry 8q8i: AO75L in complex with a synthetic trisaccharide acceptor.
Classification: TRANSFERASE
Source organism: Paramecium bursaria Chlorella virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-08-18
Authors: Laugueri, M.E., Speciale, I., Gimeno, A., Sicheng, L., Poveda, A., Lowary, T., Van Etten J, L., Barbero, J., De Castro, C., Tonetti, M., Rojas A, L.
PDB entry 8q8j: Crystal structure of human GPX4-R152H
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-18
Authors: Napolitano, V., Mourao, A., Kolonko, M., Bostock, M.J., Sattler, M., Conrad, M., Popowicz, G.
PDB entry 8q8k: KI Polyomavirus LTA NLS bound to importin alpha 2
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-18
Authors: Cross, E.M., Forwood, J.K., Alvisi, G.
PDB entry 8q8l: Tau - AD-LIA7 (tau intermediate amyloid)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8m: Tau - AD-PHF long crossover
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-08-18
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q8n: Crystal structure of human GPX4-U46C-I129S-L130S
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-18
Authors: Bostock, M.J., Mourao, A., Napolitano, V., Sattler, M., Conrad, M., Popowicz, G.