LiteFold/PDB huggingface dataset:
PDB entry 2dbc: Solution structure of the Thioredoxin-like domain of Phosducin-like protein 2(PDCL2)
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2005-12-15
Authors: Kurosaki, C., Yoshida, M., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbd: Solution structure of the CARD domain in human caspase recruitment domain protein 4 (Nod1 protein)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-12-15
Authors: Saito, K., Inoue, M., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbe: CRYSTAL STRUCTURE OF A BERENIL-DODECANUCLEOTIDE COMPLEX: THE ROLE OF WATER IN SEQUENCE-SPECIFIC LIGAND BINDING
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1990-03-19
Authors: Brown, D.G., Sanderson, M.R., Skelly, J.V., Jenkins, T.C., Brown, T., Garman, E., Stuart, D.I., Neidle, S.
PDB entry 2dbf: Solution structure of the Death domain in human Nuclear factor NF-kappa-B p105 subunit
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-12-15
Authors: Saito, K., Inoue, M., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbg: Solution structure of the Pyrin (PAAD-DAPIN) domain in human Myeloid cell nuclear differentiation antigen
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-12-15
Authors: Saito, K., Inoue, M., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbh: Solution structure of the carboxyl-terminal CARD-like domain in human TNFR-related death receptor-6
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-12-15
Authors: Saito, K., Inoue, M., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbi: Crystal Structure of a Hypothetical Protein JW0805 from Escherichia coli
Classification: Structural genomics, unknown function
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2005-12-15
Authors: Ihsanawati, Murayama, K., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbj: Solution structures of the fn3 domain of human Proto-oncogene tyrosine-protein kinase MER precursor
Classification: Transferase, SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-12-15
Authors: Sato, M., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbk: Solution structures of the SH3 domain of human Crk-like protein
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-12-15
Authors: Sato, M., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbl: MOLECULAR BASIS OF CROSS-REACTIVITY AND THE LIMITS OF ANTIBODY-ANTIGEN COMPLEMENTARITY
Classification: IMMUNOGLOBULIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 1994-02-08
Authors: Arevalo, J.H., Wilson, I.A.
PDB entry 2dbm: Solution structures of the SH3 domain of human SH3-containing GRB2-like protein 2
Classification: TRANSFERASE, SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-12-15
Authors: Sato, M., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbn: Crystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli
Classification: Structural genomics, unknown function
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-12-15
Authors: Ihsanawati, Murayama, K., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbo: Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus
Classification: HYDROLASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2005-12-15
Authors: Ishii, T., Shibata, R., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbq: Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (I41)
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-12-16
Authors: Yoshikawa, S., Arai, R., Kinoshita, Y., Uchikubo-Kamo, T., Akasaka, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbr: Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P1)
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2005-12-16
Authors: Yoshikawa, S., Arai, R., Kinoshita, Y., Uchikubo-Kamo, T., Akasaka, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbs: Crystal structure of a hypothetical protein TTHC002 from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-12-16
Authors: Yoshikawa, S., Arai, R., Kamo-Uchikubo, T., Fusatomi, E., Akasaka, R., Bessho, Y., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbt: Crystal structure of chitinase C from Streptomyces griseus HUT6037
Classification: HYDROLASE
Source organism: Streptomyces griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2005-12-16
Authors: Kezuka, Y., Watanabe, T., Nonaka, T.
PDB entry 2dbu: Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2005-12-16
Authors: Okada, T., Wada, K., Fukuyama, K.
PDB entry 2dbv: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH ASP 32 REPLACED BY GLY, LEU 187 REPLACED BY ALA, AND PRO 188 REPLACED BY SER COMPLEXED WITH NADP+
Classification: OXIDOREDUCTASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1996-12-19
Authors: Didierjean, C., Rahuel-Clermont, S., Vitoux, B., Dideberg, O., Branlant, G., Aubry, A.
PDB entry 2dbw: Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Acyl-Enzyme Intermediate
Classification: TRANSFERASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-12-16
Authors: Okada, T., Wada, K., Fukuyama, K.
PDB entry 2dbx: Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Complexed with L-Glutamate
Classification: TRANSFERASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-12-16
Authors: Okada, T., Wada, K., Fukuyama, K.
PDB entry 2dby: Crystal structure of the GTP-binding protein YchF in complexed with GDP
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2005-12-16
Authors: Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dbz: Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P61)
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2005-12-16
Authors: Yoshikawa, S., Arai, R., Kinoshita, Y., Uchikubo-Kamo, T., Akasaka, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dc0: Crystal structure of amidase
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-12-17
Authors: Ohshima, T., Sakuraba, H., Ebihara, A., Kanagawa, M., Nakagawa, N., Kuroishi, C., Satoh, S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dc1: Crystal Structure Of L-Aspartate Dehydrogenase From Hyperthermophilic Archaeon Archaeoglobus fulgidus
Classification: OXIDOREDUCTASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-12-19
Authors: Yoneda, K., Sakuraba, H., Tsuge, H., Ohshima, T.
PDB entry 2dc2: Solution Structure of PDZ Domain
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-12-20
Authors: Li, X., Wu, J., Shi, Y.
PDB entry 2dc3: Crystal structure of human cytoglobin at 1.68 angstroms resolution
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2005-12-21
Authors: Makino, M., Sugimoto, H., Sawai, H., Kawada, N., Yoshizato, K., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dc4: Structure of PH1012 protein from Pyrococcus Horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-12-28
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dc5: Crystal structure of mouse glutathione S-transferase, mu7 (GSTM7) at 1.6 A resolution
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-12-28
Authors: Kamo, S., Kishishita, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dc6: X-ray crystal structure analysis of bovine spleen cathepsin B-CA073 complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-12-28
Authors: Watanabe, D.
PDB entry 2dc7: X-ray crystal structure analysis of bovine spleen cathepsin B-CA042 complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2005-12-31
Authors: Watanabe, D.
PDB entry 2dc8: X-ray crystal structure analysis of bovine spleen cathepsin B-CA059 complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2005-12-31
Authors: Watanabe, D.
PDB entry 2dc9: X-ray crystal structure analysis of bovine spleen cathepsin B-CA074Me complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2005-12-31
Authors: Watanabe, D.
PDB entry 2dca: X-ray crystal structure analysis of bovine spleen cathepsin B-CA075 complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2006-01-01
Authors: Watanabe, D.
PDB entry 2dcb: X-ray crystal structure analysis of bovine spleen cathepsin B-CA076 complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2006-01-01
Authors: Watanabe, D.
PDB entry 2dcc: X-ray crystal structure analysis of bovine spleen cathepsin B-CA077 complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2006-01-01
Authors: Watanabe, D.
PDB entry 2dcd: X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-01-01
Authors: Watanabe, D.
PDB entry 2dce: Solution structure of the SWIRM domain of human KIAA1915 protein
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-01-06
Authors: Yoneyama, M., Tochio, N., Umehara, T., Koshiba, S., Inoue, M., Tanaka, A., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dcf: Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/H266N mutant with substrate
Classification: HYDROLASE
Source organism: Flavobacterium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-01-06
Authors: Ohki, T., Shibata, N., Higuchi, Y., Takeo, M., Negoro, S.
PDB entry 2dcg: MOLECULAR STRUCTURE OF A LEFT-HANDED DOUBLE HELICAL DNA FRAGMENT AT ATOMIC RESOLUTION
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 1988-08-29
Authors: Wang, A.H.-J., Quigley, G.J., Kolpak, F.J., Crawford, J.L., Van Boom, J.H., Van Der Marel, G.A., Rich, A.
PDB entry 2dch: Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I
Classification: HYDROLASE
Source organism: Thermoproteus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2006-01-06
Authors: Nakayama, H., Tsuge, H., Shimamura, T., Miyano, M., Nomura, N., Sako, Y.
PDB entry 2dci: NMR structure of influenza HA fusion peptide mutant W14A in DPC in pH5
Classification: VIRAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-01-07
Authors: Tamm, L.K., Lai, A.L.
PDB entry 2dcj: A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2006-01-07
Authors: Ihsanawati, Tanaka, N., Nakamura, S., Kumasaka, T.
PDB entry 2dck: A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-01-07
Authors: Fibriansah, G., Ihsanawati, Tanaka, N., Nakamura, S., Kumasaka, T.
PDB entry 2dcl: Structure of PH1503 protein from Pyrococcus Horikoshii OT3
Classification: Structural genomics, unknown function
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2006-01-08
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dcm: The Crystal Structure of S603A Mutated Prolyl Tripeptidyl Aminopeptidase Complexed with Substrate
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-01-09
Authors: Nakajima, Y., Ito, K., Xu, Y., Yamada, N., Onohara, Y., Yoshimoto, T.
PDB entry 2dcn: Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate (alpha-furanose form)
Classification: TRANSFERASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-01-10
Authors: Okazaki, S., Onda, H., Suzuki, A., Kuramitsu, S., Masui, R., Yamane, T.
PDB entry 2dco: S1P4 First Extracellular Loop Peptidomimetic
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-01-11
Authors: Pham, T.C.T., Kriwacki, R.W., Parrill, A.L.
PDB entry 2dcp: Fully automated NMR structure determination of the ENTH-VHS domain AT3G16270 from Arabidopsis thaliana
Classification: UNKNOWN FUNCTION
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2006-01-12
Authors: Lopez-Mendez, B., Guntert, P.
PDB entry 2dcq: Fully automated NMR structure determination of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana
Classification: UNKNOWN FUNCTION
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2006-01-12
Authors: Lopez-Mendez, B., Guntert, P.
PDB entry 2dcr: Fully automated solution structure determination of the Fes SH2 domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-01-12
Authors: Lopez-Mendez, B., Guntert, P.
PDB entry 2dct: Crystal structure of the TT1209 from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2006-01-12
Authors: Asada, Y., Sugahara, M., Shimizu, K., Yamamoto, H., Shimada, H., Nakamoto, T., Ono, N., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dcu: Crystal structure of translation initiation factor aIF2betagamma heterodimer with GDP
Classification: TRANSLATION
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2006-01-16
Authors: Sokabe, M., Yao, M., Sakai, N., Toya, S., Tanaka, I.
PDB entry 2dcv: The solution structure of horseshoe crab antimicrobial peptide tachystatin b with the inhibitory cystine-knot motif
Classification: ANTIMICROBIAL PROTEIN
Source organism: Tachypleus tridentatus
Experimental method: SOLUTION NMR
Deposited: 2006-01-16
Authors: Fujitani, N., Kohno, T.
PDB entry 2dcw: The solution structure of horseshoe crab antimicrobial peptide tachystatin b with the inhibitory cystine-knot motif
Classification: ANTIMICROBIAL PROTEIN
Source organism: Tachypleus tridentatus
Experimental method: SOLUTION NMR
Deposited: 2006-01-16
Authors: Fujitani, N., Kawano, K.
PDB entry 2dcx: NMR solution structure of the Dermaseptin antimicrobial peptide analog NC12-K4S4(1-13)a
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-01-17
Authors: Shalev, D.E., Rotem, S., Fish, A., Mor, A.
PDB entry 2dcy: Crystal structure of Bacillus subtilis family-11 xylanase
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-01-18
Authors: Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
PDB entry 2dcz: Thermal Stabilization of Bacillus subtilis Family-11 Xylanase By Directed Evolution
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-01-18
Authors: Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
PDB entry 2dd1: Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2006-01-19
Authors: Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.
PDB entry 2dd2: An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2006-01-19
Authors: Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.
PDB entry 2dd3: An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2006-01-19
Authors: Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.
PDB entry 2dd4: Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus recombinant apo-enzyme
Classification: HYDROLASE
Source organism: Thiobacillus thioparus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2006-01-19
Authors: Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.
PDB entry 2dd5: Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus native holo-enzyme
Classification: HYDROLASE
Source organism: Thiobacillus thioparus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-01-19
Authors: Arakawa, T., Kawano, Y., Kataoka, S., Katayama, Y., Kamiya, N., Yohda, M., Odaka, M.
PDB entry 2dd6: Solution structure of Dermaseptin antimicrobial peptide truncated, mutated analog, K4-S4(1-13)a
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-01-19
Authors: Shalev, D.E., Rotem, S., Fish, A., Mor, A.
PDB entry 2dd7: A GFP-like protein from marine copepod, Chiridius poppei
Classification: LUMINESCENT PROTEIN
Source organism: Chiridius poppei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-01-23
Authors: Suto, K., Masuda, H., Takenaka, Y., Mizuno, H.
PDB entry 2dd8: Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-01-24
Authors: Prabakaran, P., Gan, J.H., Feng, Y., Zhu, Z.Y., Xiao, X.D., Ji, X., Dimitrov, D.S.
PDB entry 2dd9: A mutant of GFP-like protein from Chiridius poppei
Classification: LUMINESCENT PROTEIN
Source organism: Chiridius poppei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-01-24
Authors: Suto, K., Masuda, H., Takenaka, Y., Mizuno, H.
PDB entry 2dda: Crystal structure of pseudechetoxin from Pseudechis australis
Classification: TOXIN
Source organism: Pseudechis australis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-01-25
Authors: Suzuki, N., Yamazaki, Y., Fujimoto, Z., Morita, T., Mizuno, H.
PDB entry 2ddb: Crystal structure of pseudecin from Pseudechis porphyriacus
Classification: TOXIN
Source organism: Pseudechis porphyriacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-01-25
Authors: Suzuki, N., Yamazaki, Y., Fujimoto, Z., Morita, T., Mizuno, H.
PDB entry 2ddc: Unique behavior of a histidine responsible for an engineered green-to-red photoconversion process
Classification: LUMINESCENT PROTEIN
Source organism: Favia favus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2006-01-27
Authors: Shimizu, H., Tsutsui, H., Nukina, N., Miyawaki, A.
PDB entry 2ddd: Unique behavior of a histidine responsible for an engineered green-to-red photoconversion process
Classification: LUMINESCENT PROTEIN
Source organism: Favia favus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2006-01-27
Authors: Shimizu, H., Tsutsui, H., Nukina, N., Miyawaki, A.
PDB entry 2dde: Structure of cinnamycin complexed with lysophosphatidylethanolamine
Classification: ANTIBIOTIC
Source organism: STREPTOMYCES GRISEOVERTICILLATUS
Experimental method: SOLUTION NMR
Deposited: 2006-01-27
Authors: Hosoda, K., Ohya, M., Kohno, T., Maeda, T., Endo, S., Wakamatsu, K.
PDB entry 2ddf: Crystal structure of TACE in complex with TAPI-2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-01-28
Authors: Orth, P.
PDB entry 2ddg: Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNA
Classification: HYDROLASE/DNA
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-01-28
Authors: Kosaka, H., Nakagawa, N., Masui, R., Hoseki, J., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ddh: Crystal Structure of Acyl-CoA oxidase complexed with 3-OH-dodecanoate
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2006-01-29
Authors: Keiji, T., Nakajima, Y., Miyahara, I., Hirotsu, K.
PDB entry 2ddi: NMR structure of the second Kunitz domain of human WFIKKN1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-01-30
Authors: Liepinsh, E., Otting, G.
PDB entry 2ddj: NMR structure of the second Kunitz domain of human WFIKKN1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-01-30
Authors: Liepinsh, E., Otting, G.
PDB entry 2ddk: Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) (orthorhombic form)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-01-30
Authors: Arai, R., Ito, K., Kamo-Uchikubo, T., Bessho, Y., Ohba, H., Ohnishi, T., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ddl: Lei4P
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2006-01-30
Authors: Ferrat, G.
PDB entry 2ddm: Crystal Structure of Pyridoxal Kinase from the Escherichia coli PdxK gene at 2.1 A resolution
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-02-02
Authors: Safo, M.K., Musayev, F.N., di Salvo, M.L., Hunt, S., Claude, J.B., Schirch, V.
PDB entry 2ddo: Crystal Structure of Pyridoxal Kinase from the Escherichia coli pdxK gene at 2.6 A resolution
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-02-02
Authors: Safo, M.K., Musayev, F.N., di Salvo, M.L., Hunt, S., Claude, J.B., Schirch, V.
PDB entry 2ddq: Crystal Structure of the Fab fragment of a R310 antibody complexed with (R)-HNE-histidine adduct
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2006-02-02
Authors: Ito, S.
PDB entry 2ddr: Crystal structure of sphingomyelinase from Bacillus cereus with calcium ion
Classification: HYDROLASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-02-02
Authors: Ago, H., Oda, M., Takahashi, M., Tsuge, H., Ochi, S., Katunuma, N., Miyano, M., Sakurai, J., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dds: Crystal structure of sphingomyelinase from Bacillus cereus with cobalt ion
Classification: HYDROLASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-02-02
Authors: Ago, H., Oda, M., Takahashi, M., Tsuge, H., Ochi, S., Katunuma, N., Miyano, M., Sakurai, J., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ddt: Crystal structure of sphingomyelinase from Bacillus cereus with magnesium ion
Classification: HYDROLASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-02-02
Authors: Ago, H., Oda, M., Tsuge, H., Katunuma, N., Miyano, M., Sakurai, J., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ddu: Crystal structure of the third repeat domain of reelin
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2006-02-03
Authors: Nogi, T., Yasui, N., Takagi, J.
PDB entry 2ddw: Crystal Structure of Pyridoxal Kinase from the Escherichia coli PdxK gene complexed with pyridoxal at 3.2 A resolution
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-02-03
Authors: Safo, M.K., Musayev, F.N., di Salvo, M.L., Hunt, S., Claude, J.B., Schirch, V.
PDB entry 2ddx: Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4
Classification: HYDROLASE
Source organism: Vibrio sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 0.86 Å
Deposited: 2006-02-06
Authors: Sakaguchi, K.
PDB entry 2ddy: Solution Structure of Matrilysin (MMP-7) Complexed to Constraint Conformational Sulfonamide Inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-02-06
Authors: Zheng, X.H., Ou, L.
PDB entry 2ddz: Protein of Unknown Function from Pyrococcus horikoshi
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2006-02-07
Authors: Rehse, P.H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2de0: Crystal structure of human alpha 1,6-fucosyltransferase, FUT8
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2006-02-07
Authors: Taniguchi, N., Ihara, H., Nakagawa, A.
PDB entry 2de2: Crystal structure of desulfurization enzyme DSZB
Classification: HYDROLASE
Source organism: Rhodococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-02-08
Authors: Lee, W.C., Ohshiro, T., Matsubara, T., Izumi, Y., Tanokura, M.
PDB entry 2de3: Crystal structure of DSZB C27S mutant in complex with 2'-hydroxybiphenyl-2-sulfinic acid
Classification: HYDROLASE
Source organism: Rhodococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-02-08
Authors: Lee, W.C., Ohshiro, T., Matsubara, T., Izumi, Y., Tanokura, M.
PDB entry 2de4: Crystal structure of DSZB C27S mutant in complex with biphenyl-2-sulfinic acid
Classification: HYDROLASE
Source organism: Rhodococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-02-08
Authors: Lee, W.C., Ohshiro, T., Matsubara, T., Izumi, Y., Tanokura, M.
PDB entry 2de5: Crystal structure of the electron transfer complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Janthinobacterium; Pseudomonas resinovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-02-08
Authors: Ashikawa, Y., Nojiri, H.
PDB entry 2de6: The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Janthinobacterium; Pseudomonas resinovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-02-08
Authors: Ashikawa, Y., Nojiri, H.
PDB entry 2de7: The substrate-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Janthinobacterium; Pseudomonas resinovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-02-08
Authors: Ashikawa, Y., Nojiri, H.
PDB entry 2de8: Crystal structure of porcine pancreatic elastase with a unique conformation induced by Tris
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-02-09
Authors: Kinoshita, T., Tada, T.
PDB entry 2de9: Crystal structure of porcine pancreatic elastase complexed with Tris after soaking a tris-free solution
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2006-02-09
Authors: Kinoshita, T., Tada, T.
PDB entry 2dea: Crystal Structure of the Aminopeptidase of Aeromonas proteolytica at pH 4.7
Classification: HYDROLASE
Source organism: Vibrio proteolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2006-02-10
Authors: Petsko, G.A., Ringe, D., Desmarais, W.
PDB entry 2deb: Crystal structure of rat carnitine palmitoyltransferase 2 in space group C2221
Classification: TRANSFERASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-02-10
Authors: Rufer, A.C., Thoma, R., Benz, J., Stihle, M., Gsell, B., De Roo, E., Banner, D.W., Mueller, F., Chomienne, O., Hennig, M.
PDB entry 2dec: Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-02-10
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2def: PEPTIDE DEFORMYLASE CATALYTIC CORE (RESIDUES 1-147), NMR, 20 STRUCTURES
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 1997-12-15
Authors: Meinnel, T., Dardel, F.
PDB entry 2deg: Crystal structure of tt0972 protein form Thermus Thermophilus with Mn2(+) ions
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-02-10
Authors: Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2deh: Crystal structure of tt0972 protein form Thermus Thermophilus with Cl(-) ions
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2006-02-10
Authors: Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dei: Crystal Structure of galaktokinase from Pyrococcus horikoshii with AMP-PNP and galactose
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-02-10
Authors: Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dej: Crystal Structure of galaktokinase from Pyrococcus horikoshii with AMP-PN and galactose
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-02-10
Authors: Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dek: Crystal structure of project ID PH0725 from Pyrococcus horikoshii OT3 at 1.65 A resolution
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-02-10
Authors: Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dem: Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA
Classification: HYDROLASE/DNA
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2006-02-13
Authors: Kosaka, H., Nakagawa, N., Masui, R., Hoseki, J., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2den: Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Streptococcus sp. group G
Experimental method: SOLUTION NMR
Deposited: 2006-02-14
Authors: Hu, H.Y., Lin, D.H., Chang, Y.G.
PDB entry 2deo: 1510-N membrane protease specific for a stomatin homolog from Pyrococcus horikoshii
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-02-16
Authors: Yokoyama, H., Matsui, I.
PDB entry 2dep: Crystal Structure of xylanase B from Clostridium stercorarium F9
Classification: HYDROLASE
Source organism: Clostridium stercorarium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-02-16
Authors: Fushinobu, S., Nishimoto, M., Miyanaga, A., Kitaoka, M., Hayashi, K.
PDB entry 2deq: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in complex with Biotinyl-5'-AMP, K111G mutation
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2006-02-16
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2der: Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state
Classification: Transferase/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2006-02-17
Authors: Numata, T., Ikeuchi, Y., Fukai, S., Suzuki, T., Nureki, O.
PDB entry 2des: INTERACTIONS BETWEEN MORPHOLINYL ANTHRACYCLINES AND DNA: THE CRYSTAL STRUCTURE OF A MORPHOLINO DOXORUBICIN BOUND TO D(CGTACG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 1993-03-16
Authors: Cirilli, M., Bachechi, F., Ughetto, G., Colonna, F.P., Capobianco, M.L.
PDB entry 2det: Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state
Classification: Transferase/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2006-02-17
Authors: Numata, T., Ikeuchi, Y., Fukai, S., Suzuki, T., Nureki, O.
PDB entry 2deu: Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state
Classification: Transferase/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2006-02-17
Authors: Numata, T., Ikeuchi, Y., Fukai, S., Suzuki, T., Nureki, O.
PDB entry 2dev: Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2006-02-17
Authors: Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dew: Crystal structure of human peptidylarginine deiminase 4 in complex with histone H3 N-terminal tail including Arg8
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-02-18
Authors: Arita, K., Shimizu, T., Hashimoto, H., Hidaka, Y., Yamada, M., Sato, M.
PDB entry 2dex: Crystal structure of human peptidylarginine deiminase 4 in complex with histone H3 N-terminal peptide including Arg17
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-02-18
Authors: Arita, K., Shimizu, T., Hashimoto, H., Hidaka, Y., Yamada, M., Sato, M.
PDB entry 2dey: Crystal structure of human peptidylarginine deiminase 4 in complex with histone H4 N-terminal tail including Arg3
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-02-18
Authors: Arita, K., Shimizu, T., Hashimoto, H., Hidaka, Y., Yamada, M., Sato, M.
PDB entry 2dez: Structure of human PYY
Classification: NEUROPEPTIDE
Experimental method: SOLUTION NMR
Deposited: 2006-02-20
Authors: Nygaard, R.
PDB entry 2df0: Solution structure of human PYY3-36
Classification: NEUROPEPTIDE
Experimental method: SOLUTION NMR
Deposited: 2006-02-20
Authors: Nygaard, R.
PDB entry 2df3: The structure of Siglec-7 in complex with alpha(2,3)/alpha(2,6) disialyl lactotetraosyl 2-(trimethylsilyl)ethyl
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-02-23
Authors: Attrill, H.
PDB entry 2df4: Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Mn2+
Classification: LIGASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-02-23
Authors: Nakamura, A., Yao, M., Tanaka, I.
PDB entry 2df5: Crystal Structure of Pf-PCP(1-204)-C
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-02-24
Authors: Katagiri, Y., Takano, K., Chon, H., Matsumura, H., Koga, Y., Kanaya, S.
PDB entry 2df6: Crystal Structure of the SH3 Domain of betaPIX in Complex with a High Affinity Peptide from PAK2
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2006-02-25
Authors: Hoelz, A.
PDB entry 2df7: Crystal structure of infectious bursal disease virus VP2 subviral particle
Classification: VIRUS LIKE PARTICLE
Source organism: Infectious bursal disease virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-02-27
Authors: Ko, T.P., Lee, C.C., Wang, M.Y., Wang, A.H.
PDB entry 2df8: Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphate
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-02-27
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dfa: Crystal Structure of Lactam Utilization Protein from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-02-28
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dfb: Xylanase II from Tricoderma reesei at 100K
Classification: HYDROLASE
Source organism: Hypocrea jecorina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2006-02-28
Authors: Harata, K., Akiba, T.
PDB entry 2dfc: Xylanase II from Tricoderma reesei at 293K
Classification: HYDROLASE
Source organism: Hypocrea jecorina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2006-02-28
Authors: Harata, K., Akiba, T.
PDB entry 2dfd: Crystal Structure of Human Malate Dehydrogenase Type 2
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-02-28
Authors: Ugochukwu, E., Shafqat, N., Rojkova, A., Sundstrom, M., Arrowsmith, C., Weigelt, J., Edwards, A., von Delft, F., Oppermann, U., Structural Genomics Consortium (SGC)
PDB entry 2dfe: Crystal structure of Tk-RNase HII(1-200)-C
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-03-01
Authors: Katagiri, Y., Takano, K., Chon, H., Matsumura, H., Koga, Y., Kanaya, S.
PDB entry 2dff: Crystal structure of Tk-RNase HII(1-204)-C
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-03-01
Authors: Katagiri, Y., Takano, K., Chon, H., Matsumura, H., Koga, Y., Kanaya, S.
PDB entry 2dfh: Crystal structure of Tk-RNase HII(1-212)-C
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2006-03-01
Authors: Katagiri, Y., Takano, K., Chon, H., Matsumura, H., Koga, Y., Kanaya, S.
PDB entry 2dfi: Crystal structure of Pf-MAP(1-292)-C
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-03-01
Authors: Katagiri, Y., Takano, K., Chon, H., Matsumura, H., Koga, Y., Kanaya, S.
PDB entry 2dfj: Crystal Structure of the Diadenosine Tetraphosphate Hydrolase from Shigella flexneri 2a
Classification: HYDROLASE
Source organism: Shigella flexneri 2a
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2006-03-02
Authors: Wang, Q.H., Hu, W.X., Bi, R.C.
PDB entry 2dfk: Crystal structure of the CDC42-Collybistin II complex
Classification: CELL CYCLE
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2006-03-02
Authors: Xiang, S., Kim, E.Y., Connelly, J.J., Nassar, N., Kirsch, J., Winking, J., Schwarz, G., Schindelin, H.
PDB entry 2dfl: Crystal structure of left-handed RadA filament
Classification: RECOMBINATION
Source organism: Sulfolobus solfataricus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-03-02
Authors: Chen, L.T., Ko, T.P., Wang, T.F., Wang, A.H.J.
PDB entry 2dfn: Structure of shikimate kinase from Mycobacterium tuberculosis complexed with ADP and shikimate at 1.9 angstrons of resolution
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2006-03-03
Authors: Dias, M.V., Faim, L.M., Vasconcelos, I.B., de Oliveira, J.S., Basso, L.A., Santos, D.S., de Azevedo, W.F.
PDB entry 2dfp: X-RAY STRUCTURE OF AGED DI-ISOPROPYL-PHOSPHORO-FLUORIDATE (DFP) BOUND TO ACETYLCHOLINESTERASE
Classification: HYDROLASE
Source organism: Torpedo californica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1998-12-07
Authors: Kryger, G., Millard, C.B., Silman, I., Sussman, J.L.
PDB entry 2dfs: 3-D structure of Myosin-V inhibited state
Classification: CONTRACTILE PROTEIN/TRANSPORT PROTEIN
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 24 Å
Deposited: 2006-03-03
Authors: Liu, J., Taylor, D.W., Krementsova, E.B., Trybus, K.M., Taylor, K.A.
PDB entry 2dft: Structure of shikimate kinase from Mycobacterium tuberculosis complexed with ADP and Mg at 2.8 angstrons of resolution
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-03-03
Authors: Dias, M.V., Faim, L.M., Vasconcelos, I.B., de Oliveira, J.S., Basso, L.A., Santos, D.S., de Azevedo, W.F.
PDB entry 2dfu: Crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Thermus Thermophilus HB8
Classification: ISOMERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-03-03
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dfv: Hyperthermophilic threonine dehydrogenase from Pyrococcus horikoshii
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2006-03-03
Authors: Ishikawa, K., Higashi, N., Nakamura, T., Matsuura, T., Nakagawa, A.
PDB entry 2dfx: Crystal structure of the carboxy terminal domain of colicin E5 complexed with its inhibitor
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-03-06
Authors: Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
PDB entry 2dfy: Crystal structure of a cyclized protein fusion of LMO4 LIM domains 1 and 2 with the LIM interacting domain of LDB1
Classification: TRANSCRIPTION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-03-06
Authors: Jeffries, C.M.J., Graham, S.C., Collyer, C.A., Guss, J.M., Matthews, J.M.
PDB entry 2dg0: Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-03-07
Authors: Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
PDB entry 2dg1: Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2006-03-07
Authors: Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
PDB entry 2dg2: Crystal Structure of Mouse Apolipoprotein A-I Binding Protein
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2006-03-08
Authors: Shumilin, I.A., Jha, K.N., Zheng, H., Chruszcz, M., Cymborowski, M., Herr, J.C., Minor, W.
PDB entry 2dg3: Wildtype FK506-binding protein complexed with Rapamycin
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-03-08
Authors: Buckle, A.M.
PDB entry 2dg4: FK506-binding protein mutant WF59 complexed with Rapamycin
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-03-08
Authors: Buckle, A.M.
PDB entry 2dg5: Crystal Structure of Gamma-glutamyl transpeptidase from Escherichia coli in complex with hydrolyzed Glutathione
Classification: TRANSFERASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-03-08
Authors: Okada, T., Wada, K., Fukuyama, K.
PDB entry 2dg6: Crystal structure of the putative transcriptional regulator SCO5550 from Streptomyces coelicolor A3(2)
Classification: GENE REGULATION
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-03-08
Authors: Hayashi, T., Tanaka, Y., Sakai, N., Yao, M., Tamura, T., Tanaka, I.