LiteFold/PDB huggingface dataset:
PDB entry 7d1a: cryo-EM structure of a group II intron RNP complexed with its reverse transcriptase
Classification: TRANSFERASE/RNA
Source organism: Lactococcus lactis subsp. cremoris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-09-14
Authors: Liu, N., Dong, X.L., Hu, C.X., Zeng, J.W., Wang, J.W., Wang, J., Wang, H.W., Belfort, M.
PDB entry 7d1b: Crystal structure of Fimbriiglobus ruber glutaminyl cyclase
Classification: TRANSFERASE
Source organism: Fimbriiglobus ruber
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2020-09-14
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d1c: Crystal structure of mouse Cryptochrome 1 in complex with compound TH303
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2020-09-14
Authors: Miller, S.A., Hirota, T.
PDB entry 7d1d: Crystal structure of Bacteroides thetaiotaomicron glutaminyl cyclase bound to 1-benzylimidazole
Classification: TRANSFERASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-09-14
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d1e: Crystal structure of Bacteroides thetaiotaomicron glutaminyl cyclase bound to N-acetylhistamine
Classification: TRANSFERASE
Source organism: Bacteroides thetaiotaomicron CAG:40
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-09-14
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d1f: Structure of the CYP102A1 Haem Domain with N-enanthyl-L-prolyl-L-phenylalanine in complex with Methylamine
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-09-14
Authors: Stanfield, J.K., Sugimoto, H., Shoji, O.
PDB entry 7d1g: Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase GAPDH from Clostridium beijerinckii
Classification: OXIDOREDUCTASE
Source organism: Clostridium beijerinckii NCIMB 8052
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2020-09-14
Authors: Chen, Y., Lan, J., Liu, W., Wang, L., Xu, Y.
PDB entry 7d1h: Crystal structure of Ixodes scapularis glutaminyl cyclase with D238A mutation
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2020-09-14
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d1i: Crystal structure of acinetobacter baumannii MurG
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.487 Å
Deposited: 2020-09-14
Authors: Park, H.H., Jeong, k.H.
PDB entry 7d1l: complex structure of two RRM domains
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-09-14
Authors: Wang, X., Liao, S., Xu, C.
PDB entry 7d1m: CRYSTAL STRUCTURE OF THE SARS-CoV-2 MAIN PROTEASE COMPLEXED WITH GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-09-14
Authors: Fu, L.F., Gilski, M., Shabalin, I., Gao, G.F., Qi, J.X.
PDB entry 7d1n: Crystal structure of Ixodes scapularis glutaminyl cyclase with three Cu ions bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2020-09-15
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d1o: Crystal structure of SARS-Cov-2 main protease with narlaprevir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2020-09-15
Authors: Fu, L.F., Feng, Y., Qi, J.X.
PDB entry 7d1p: Crystal structure of Ixodes scapularis glutaminyl cyclase with three Cd ions bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2020-09-15
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d1t: Cryo-EM Structure of PSII at 1.95 angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus vulcanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.95 Å
Deposited: 2020-09-15
Authors: Kato, K., Miyazaki, N., Hamaguchi, T., Nakajima, Y., Akita, F., Yonekura, K., Shen, J.R.
PDB entry 7d1u: Cryo-EM Structure of PSII at 2.08 angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus vulcanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2020-09-15
Authors: Kato, K., Miyazaki, N., Hamaguchi, T., Nakajima, Y., Akita, F., Yonekura, K., Shen, J.R.
PDB entry 7d1v: Hsp90 alpha N-terminal domain in complex with a 6C compund
Classification: CHAPERONE/INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.332 Å
Deposited: 2020-09-15
Authors: Shin, S.C., Kim, E.E.
PDB entry 7d1x: Crystal structure of 7-alpha-hydroxyl bile acid sulfotransferase (Sult2a8)
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-09-15
Authors: Au, W.N.S., Wang, K.
PDB entry 7d1y: Crystal structure of Ixodes scapularis glutaminyl cyclase with two Co ions bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-09-15
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d1z: Cryo-EM structure of SET8-nucleosome complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2020-09-15
Authors: Ho, C.-H., Takizawa, Y., Kobayashi, W., Arimura, Y., Kurumizaka, H.
PDB entry 7d20: Cryo-EM structure of SET8-CENP-A-nucleosome complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-09-15
Authors: Ho, C.-H., Takizawa, Y., Kobayashi, W., Arimura, Y., Kurumizaka, H.
PDB entry 7d21: Crystal structure of Ixodes scapularis glutaminyl cyclase with two Zn ions bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2020-09-15
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d22: Hsp90 alpha N-terminal domain in complex with a 6B compund
Classification: CHAPERONE/INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-09-15
Authors: Shin, S.C., Kim, E.E.
PDB entry 7d23: Crystal structure of Ixodes scapularis glutaminyl cyclase with one K ion bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-09-15
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d24: Hsp90 alpha N-terminal domain in complex with a 4B compund
Classification: CHAPERONE/INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-09-15
Authors: Shin, S.C., Kim, E.E.
PDB entry 7d25: Hsp90 alpha N-terminal domain in complex with a 14 compund
Classification: CHAPERONE/INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-09-15
Authors: Shin, S.C., Kim, E.E.
PDB entry 7d26: Hsp90 alpha N-terminal domain in complex with a 8 compund
Classification: CHAPERONE/INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-09-15
Authors: Shin, S.C., Kim, E.E.
PDB entry 7d27: Structure of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
Classification: LIGASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2020-09-16
Authors: Park, H.H., Jeong, K.H.
PDB entry 7d28: Crystal structure of MazF (Form-I) from Deinococcus radiodurans
Classification: TOXIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-09-16
Authors: Dhanasingh, I., Lee, S.H.
PDB entry 7d29: CBM32 of AlyQ
Classification: SUGAR BINDING PROTEIN
Source organism: Persicobacter sp. CCB-QB2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-09-16
Authors: Teh, A.H., Sim, P.F.
PDB entry 7d2a: CBM32 of AlyQ in complex with 4,5-unsaturated mannuronic acid
Classification: SUGAR BINDING PROTEIN
Source organism: Persicobacter sp. CCB-QB2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2020-09-16
Authors: Teh, A.H., Sim, P.F.
PDB entry 7d2b: Crystal structure of Ixodes scapularis glutaminyl cyclase with a Ni ion bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-09-16
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d2c: The Crystal Structure of human PARP14 from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2020-09-16
Authors: Wang, F., Miao, Q., Lv, Z., Cheng, W., Lin, D., Xu, X., Tan, J.
PDB entry 7d2d: Crystal structure of Ixodes scapularis glutaminyl cyclase with a Mn ion bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-09-16
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d2e: Tetrameric coiled-coil structure of liprin-alpha2_H3
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-09-16
Authors: Liang, M., Wei, Z.
PDB entry 7d2f: Lp major histidine acid phosphatase mutant D281A/5'-AMP
Classification: HYDROLASE
Source organism: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-09-16
Authors: Guo, Y., Teng, Y.
PDB entry 7d2g: Coiled-coil structure of liprin-alpha2_H2delC
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-09-16
Authors: Liang, M., Wei, Z.
PDB entry 7d2h: Tetrameric coiled-coil structure of liprin-alpha2_H2
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-09-16
Authors: Liang, M., Wei, Z.
PDB entry 7d2i: Crystal structure of Ixodes scapularis glutaminyl cyclase with a Fe ion bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-09-16
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d2j: Crystal structure of Ixodes scapularis glutaminyl cyclase with a Cd ion bound to the active site
Classification: TRANSFERASE
Source organism: Ixodes scapularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-09-16
Authors: Huang, K.-F., Huang, J.-S., Wu, M.-L., Hsieh, W.-L., Wang, A.H.-J.
PDB entry 7d2k: Crystal structure of rat TRPV6 in complex with (4- phenylcyclohexyl)piperazine inhibitor Br-cis-22a
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.698 Å
Deposited: 2020-09-16
Authors: Singh, A.K., Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 7d2l: Crystal structure of the Cas12i1 R-loop complex before target DNA cleavage
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-09-16
Authors: Zhang, B., Luo, D.Y., Li, Y., OuYang, S.Y.
PDB entry 7d2m: Crystal structure of MazF (Form-II) from Deinococcus radiodurans
Classification: TOXIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2020-09-17
Authors: Dhanasingh, I., Lee, S.H.
PDB entry 7d2n: Crystal structure of MazE-MazF (Form-III) from Deinococcus radiodurans
Classification: TOXIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-09-17
Authors: Dhanasingh, I., Lee, S.H.
PDB entry 7d2o: Solution structure of Gaussia Luciferase by NMR
Classification: LUMINESCENT PROTEIN
Source organism: Gaussia princeps (T. Scott, 1894)
Experimental method: SOLUTION NMR
Deposited: 2020-09-17
Authors: Kobayashi, N., Wu, N., Kuroda, Y., Yamazaki, T.
PDB entry 7d2p: Crystal structure of MazE-MazF (Form-II) from Deinococcus radiodurans
Classification: TOXIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2020-09-17
Authors: Dhanasingh, I., Lee, S.H.
PDB entry 7d2q: Crystal structure of MazE-MazF (Form-I) from Deinococcus radiodurans
Classification: TOXIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-09-17
Authors: Dhanasingh, I., Lee, S.H.
PDB entry 7d2r: Crystal structure of Agrobacterium tumefaciens aconitase X mutant - S449C/C510V
Classification: LYASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.005 Å
Deposited: 2020-09-17
Authors: Murase, Y., Watanabe, Y., Watanabe, S.
PDB entry 7d2s: Crystal structure of Rsu1/PINCH1_LIM5C complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.653 Å
Deposited: 2020-09-17
Authors: Yang, H., Wei, Z., Cong, Y.
PDB entry 7d2t: Crystal structure of Rsu1/PINCH1_LIM45C complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-09-17
Authors: Yang, H., Wei, Z., Yu, C.
PDB entry 7d2u: Crystal structure of Rsu1/PINCH1_LIM45C complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2020-09-17
Authors: Yang, H., Wei, Z., Cong, Y.
PDB entry 7d2v: Crystal Structure of BACE1 in complex with N-{3-[(5R)-3-amino-2,5-dimethyl-1,1-dioxo-5,6-dihydro-2H-1lambda6,2,4-thiadiazin-5-yl]-4-fluorophenyl}-5-fluoropyridine-2-carboxamide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-09-17
Authors: Fujimoto, K., Yoshida, S., Tadano, G., Asada, N., Fuchino, K., Suzuki, S., Matsuoka, E., Yamamoto, T., Yamamoto, S., Ando, S., Kanegawa, N., Tonomura, Y., Ito, H., Moechars, D., Rombouts, F.J.R., Gijsen, H.J.M., Kusakabe, K.I.
PDB entry 7d2w: Crystal structure of PHIT/PHISTa-like subfamily PF3D7_1372300 protein from plasmodium falciparum
Classification: PROTEIN BINDING
Source organism: Plasmodium falciparum (isolate 3D7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2020-09-17
Authors: Gao, Y., Yang, B.L.
PDB entry 7d2x: Crystal Structure of BACE1 in complex with N-{3-[(4R)-2-amino-4-(prop-1-yn-1-yl)-5,6-dihydro-4H-1,3-oxazin-4-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-09-17
Authors: Fujimoto, K., Yoshida, S., Tadano, G., Asada, N., Fuchino, K., Suzuki, S., Matsuoka, E., Yamamoto, T., Yamamoto, S., Ando, S., Kanegawa, N., Tonomura, Y., Ito, H., Moechars, D., Rombouts, F.J.R., Gijsen, H.J.M., Kusakabe, K.I.
PDB entry 7d2y: complex of two RRM domains
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2020-09-17
Authors: Wang, X., Liao, S., Xu, C.
PDB entry 7d2z: Structure of sybody SR31 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2020-09-17
Authors: Li, T., Cai, H., Yao, H., Qin, W., Li, D.
PDB entry 7d30: Structure of sybody MR17-SR31 fusion in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-09-17
Authors: Li, T., Yao, H., Cai, H., Qin, W., Li, D.
PDB entry 7d31: The TBA-Pb2+ complex in P41212 space group
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.396 Å
Deposited: 2020-09-18
Authors: Liu, H.H., Gao, Y.Q., Sheng, J., Gan, J.H.
PDB entry 7d32: The TBA-Pb2+ complex in P41212 space group
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.707 Å
Deposited: 2020-09-18
Authors: Liu, H.H., Gao, Y.Q., Sheng, J., Gan, J.H.
PDB entry 7d33: The Pb2+ complexed structure of TBA G8C mutant
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.117 Å
Deposited: 2020-09-18
Authors: Liu, H.H., Gao, Y.Q., Sheng, J., Gan, J.H.
PDB entry 7d34: AtClpS1-peptide complex
Classification: PEPTIDE BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.007 Å
Deposited: 2020-09-18
Authors: Heo, J., Kim, L., Kwon, D.H., Song, H.K.
PDB entry 7d35: Human LC8 bound to ebola virus VP35(67-76)
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2020-09-18
Authors: Ku, B., Lim, D.
PDB entry 7d36: Crystal Structure of BACE1 in complex with N-{3-[(3S)-1-amino-5-fluoro-3-methyl-3,4-dihydro-2,6-naphthyridin-3-yl]-4-fluorophenyl}-5-cyano-3-methylpyridine-2-carboxamide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-09-18
Authors: Nakahara, K., Mitsuoka, Y., Kasuya, S., Yamamoto, T., Yamamoto, S., Ito, H., Kido, Y., Kusakabe, K.I.
PDB entry 7d37: Solution structure of Acm2-precursor peptide of Heat-stable enterotoxin produced by Enterotoxigenic Escherichia coli
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2020-09-18
Authors: Shimamoto, S., Hidaka, Y.
PDB entry 7d38: flavone reductase
Classification: FLAVOPROTEIN
Source organism: Flavonifractor plautii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.649 Å
Deposited: 2020-09-18
Authors: Hong, S., Yang, G.H., Zhang, P.
PDB entry 7d39: FLR-apo
Classification: FLAVOPROTEIN
Source organism: Flavonifractor plautii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.198 Å
Deposited: 2020-09-18
Authors: Hong, S., Yang, G.H., Zhang, P.
PDB entry 7d3a: flavone reductase
Classification: FLAVOPROTEIN
Source organism: Flavonifractor plautii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.552 Å
Deposited: 2020-09-18
Authors: Hong, S., Yang, G.H., Zhang, P.
PDB entry 7d3b: flavone reductase
Classification: FLAVOPROTEIN
Source organism: Flavonifractor plautii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-09-18
Authors: Hong, S., Yang, G.H., Zhang, P.
PDB entry 7d3c: The newly emerged SARS-like coronavirus HCoV-EMC also has an ""Achilles' heel"": current effective inhibitor targeting a 3C-like protease
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-09-18
Authors: Yan, L., Ren, Z.
PDB entry 7d3d: Crystal structure of SPOP bound with a peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-09-18
Authors: Yang, C.-G., Gan, J.H.
PDB entry 7d3e: Cryo-EM structure of human DUOX1-DUOXA1 in low-calcium state
Classification: ELECTRON TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-09-19
Authors: Chen, L., Wu, J.X.
PDB entry 7d3f: Cryo-EM structure of human DUOX1-DUOXA1 in high-calcium state
Classification: ELECTRON TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2020-09-19
Authors: Chen, L., Wu, J.X.
PDB entry 7d3i: Crystal structure of SARS-CoV-2 main protease in complex with MI-23
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.004 Å
Deposited: 2020-09-19
Authors: Zeng, R., Li, Y.S., Qiao, J.X., Wang, Y.F., Yang, S.Y., Lei, J.
PDB entry 7d3j: Crystal structure of the Cas12i1 R-loop complex after target DNA cleavage
Classification: RNA BINDING PROTEIN
Source organism: Lachnospiraceae bacterium ND2006; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-09-19
Authors: Zhang, B., Luo, D.Y., Li, Y., OuYang, S.Y.
PDB entry 7d3k: FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY B77
Classification: VIRUS
Source organism: Bos taurus; Foot-and-mouth disease virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-09-19
Authors: He, Y., Lou, Z.
PDB entry 7d3l: FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY F145
Classification: VIRUS
Source organism: Bos taurus; Foot-and-mouth disease virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2020-09-19
Authors: He, Y., Lou, Z.
PDB entry 7d3m: FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY R50
Classification: VIRUS
Source organism: Bos taurus; Foot-and-mouth disease virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2020-09-19
Authors: He, Y., Lou, Z.
PDB entry 7d3r: FOOT AND MOUTH DISEASE VIRUS A/WH/CHA/09-BOUND THE SINGLE CHAIN FRAGME ANTIBODY R50
Classification: VIRUS
Source organism: Bos taurus; Foot-and-mouth disease virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2020-09-20
Authors: He, Y., Lou, Z.
PDB entry 7d3s: Human SECR in complex with an engineered Gs heterotrimer
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; unidentified; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-09-20
Authors: Fukuhara, S., Kobayashi, K., Kusakizako, T., Shihoya, W., Nureki, O.
PDB entry 7d3t: Crystal structure of OSPHR2 in complex with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Oryza sativa subsp. indica; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-09-20
Authors: Guan, Z.Y., Zhang, Z.F., Liu, Z.
PDB entry 7d3u: Structure of Mrp complex from Dietzia sp. DQ12-45-1b
Classification: MEMBRANE PROTEIN
Source organism: Dietzia sp. DQ12-45-1b
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-09-21
Authors: Li, B., Zhang, K.D., Wu, X.L., Zhang, X.C.
PDB entry 7d3v: Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2020-09-21
Authors: Cao, C.Y., Liu, Y.P., Lan, W.X.
PDB entry 7d3w: Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2020-09-21
Authors: Cao, C., Liu, Y., Lan, W.
PDB entry 7d3x: Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2020-09-21
Authors: Cao, C., Liu, Y.
PDB entry 7d3y: Crystal structure of the osPHR2-osSPX2 complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Oryza sativa subsp. indica; Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2020-09-21
Authors: Zhang, Q.X., Guan, Z.Y., Zuo, J.Q., Zhang, Z.F., Liu, Z.
PDB entry 7d3z: X-ray crystal Structure of E.coli Dihydrofolate Reductase complexed with folate and NADP+ at pH4.5
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-09-21
Authors: Wan, Q., Dealwis, C.
PDB entry 7d40: Crystal structure of GATase subunit of Methanocaldococcus jannaschii GMP synthetase
Classification: LIGASE
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2020-09-21
Authors: Bellur, A., Dongre, A., Kumar, S., Balaram, H.
PDB entry 7d41: Crystal structure of type III polyketide synthase from Mycobacterium marinum - P 21 21 21 Space group
Classification: TRANSFERASE
Source organism: Mycobacterium marinum (strain ATCC BAA-535 / M)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.419 Å
Deposited: 2020-09-21
Authors: Pratap, S., Kant, A., Saxena, P., Krishnan, V.
PDB entry 7d42: Structural basis of tropifexor as a potent and selective agonist for farnesoid X receptor
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.697 Å
Deposited: 2020-09-22
Authors: Jiang, L., Chen, Y.
PDB entry 7d43: eIF2B-eIF2(aP), aPg complex
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-09-22
Authors: Kashiwagi, K., Ito, T.
PDB entry 7d44: eIF2B-eIF2(aP), aP2 complex
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2020-09-22
Authors: Kashiwagi, K., Ito, T.
PDB entry 7d45: eIF2B-eIF2(aP), aP1 complex
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-09-22
Authors: Kashiwagi, K., Ito, T.
PDB entry 7d46: eIF2B apo
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2020-09-22
Authors: Kashiwagi, K., Ito, T.
PDB entry 7d47: Crystal structure of SARS-CoV-2 Papain-like protease C111S
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2020-09-22
Authors: Wu, K.-P., Chen, S.-K., Lu, Y.-C., Huang, Y.-C.J., Lee, M.-H.
PDB entry 7d48: apo-form cyclic trinucleotide synthase CdnD
Classification: TRANSFERASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-09-23
Authors: Yang, C.-S., Hou, M.-H., Tsai, C.-L., Wang, Y.-C., Ko, T.-P., Chen, Y.
PDB entry 7d49: X-ray crystal Structure of E.coli Dihydrofolate Reductase complexed with folate and NADP+ at pH4.5
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.651 Å
Deposited: 2020-09-23
Authors: Wan, Q., Dealwis, C.
PDB entry 7d4a: The Crystal Structure of human JMJD2A Tudor domain from Biortus
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2020-09-23
Authors: Wang, F., Lv, Z., Cheng, W., Lin, D., Ju, C., Bao, X., Zhu, B.
PDB entry 7d4b: Crystal structure of 4-1BB in complex with a VHH
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2020-09-23
Authors: Wang, C.
PDB entry 7d4c: Structure of L-lysine oxidase precursor
Classification: OXIDOREDUCTASE
Source organism: Hypocrea rufa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2020-09-23
Authors: Ito, N., Kitagawa, M., Matsumoto, Y., Inagaki, K., Imada, K.
PDB entry 7d4d: Structure of L-lysine oxidase precursor in complex with L-lysine (1.24M)
Classification: OXIDOREDUCTASE
Source organism: Hypocrea rufa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2020-09-23
Authors: Kitagawa, M., Ito, N., Matsumoto, Y., Inagaki, K., Imada, K.
PDB entry 7d4e: Structure of L-lysine oxidase precursor in complex with L-lysine (1.0 M)
Classification: OXIDOREDUCTASE
Source organism: Hypocrea rufa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-09-23
Authors: Kitagawa, M., Ito, N., Matsumoto, Y., Inagaki, K., Imada, K.
PDB entry 7d4f: Structure of COVID-19 RNA-dependent RNA polymerase bound to suramin
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2020-09-23
Authors: Li, Z., Yin, W., Zhou, Z., Yu, X., Xu, H.
PDB entry 7d4g: A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-09-23
Authors: Cao, L., Wang, X.
PDB entry 7d4i: Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2020-09-24
Authors: Du, Y., Zhang, J., An, W., Ye, K.
PDB entry 7d4j: ddATP complex of cyclic trinucleotide synthase CdnD
Classification: TRANSFERASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2020-09-24
Authors: Yang, C.-S., Hou, M.-H., Tsai, C.-L., Wang, Y.-C., Ko, T.-P., Chen, Y.
PDB entry 7d4k: Crystal structure of Tmm from Pelagibacter sp. strain HTCC7211
Classification: FLAVOPROTEIN
Source organism: Candidatus Pelagibacter sp. HTCC7211
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-09-24
Authors: Li, C.Y., Zhang, Y.Z.
PDB entry 7d4l: X-ray crystal Structure of E.coli Dihydrofolate Reductase complexed with folate and NADP+ at pH7.0
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-09-24
Authors: Wan, Q., Dealwis, C.
PDB entry 7d4m: Crystal structure of Tmm from strain HTCC7211 soaked with DMS for 5 min
Classification: FLAVOPROTEIN
Source organism: Candidatus Pelagibacter sp. HTCC7211
Experimental method: X-RAY DIFFRACTION
Resolution: 1.786 Å
Deposited: 2020-09-24
Authors: Li, C.Y., Zhang, Y.Z.
PDB entry 7d4n: Crystal structure of Tmm from strain HTCC7211 soaked with DMS for 20 min
Classification: FLAVOPROTEIN
Source organism: Candidatus Pelagibacter sp. HTCC7211
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2020-09-24
Authors: Li, C.Y., Zhang, Y.Z.
PDB entry 7d4o: cyclic trinucleotide synthase CdnD in complex with ATP and ADP
Classification: TRANSFERASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2020-09-24
Authors: Yang, C.-S., Hou, M.-H., Tsai, C.-L., Wang, Y.-C., Ko, T.-P., Chen, Y.
PDB entry 7d4p: Structure of human TRPC5 in complex with clemizole
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2020-09-24
Authors: Chen, L., Song, K., Wei, M., Guo, W.
PDB entry 7d4q: Structure of human TRPC5 in complex with HC-070
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2020-09-24
Authors: Chen, L., Song, K., Wei, M., Guo, W.
PDB entry 7d4r: SpuA native structure
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-09-24
Authors: Chen, Y., Zhang, Q., Bartlam, M.
PDB entry 7d4s: apo-form cyclic trinucleotide synthase CdnD
Classification: TRANSFERASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2020-09-24
Authors: Yang, C.-S., Hou, M.-H., Tsai, C.-L., Wang, Y.-C., Ko, T.-P., Chen, Y.
PDB entry 7d4u: ATP complex with double mutant cyclic trinucleotide synthase CdnD
Classification: TRANSFERASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-09-24
Authors: Yang, C.-S., Hou, M.-H., Tsai, C.-L., Wang, Y.-C., Ko, T.-P., Chen, Y.
PDB entry 7d4v: Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase Y91F/C120S variant
Classification: TRANSFERASE
Source organism: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2020-09-24
Authors: Kikuchi, M., Yamauchi, T., Iizuka, Y., Tsunoda, M.
PDB entry 7d4x: X-ray crystal Structure of E.coli Dihydrofolate Reductase complexed with folate and NADP+ at pH7.0
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.599 Å
Deposited: 2020-09-24
Authors: Wan, Q., Dealwis, C.
PDB entry 7d4y: Structure of human wild-type peptidylarginine deiminase type III (PAD3)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.962 Å
Deposited: 2020-09-24
Authors: Unno, M.
PDB entry 7d50: SpuA mutant - H221N with glutamyl-thioester
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2020-09-24
Authors: Chen, Y., Zhang, Q., Bartlam, M.
PDB entry 7d51: Crystal structure of a truly knotted protein: cyclized YibK from Haemophilus influenzae
Classification: TRANSFERASE
Source organism: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2020-09-24
Authors: Sriramoju, M.K., Ko, K.T., Hsu, S.T.D.
PDB entry 7d52: Crystal structure of yak lactoperoxidase with a disordered propionic group of heme moiety at 2.20 A resolution
Classification: OXIDOREDUCTASE
Source organism: Bos mutus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-09-24
Authors: Singh, P.K., Rani, C., Ahmad, N., Sharma, P., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 7d53: SpuA mutant - H221N with Glu
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-09-24
Authors: Chen, Y., Zhang, Q., Bartlam, M.
PDB entry 7d54: Crstal structure MsGATase with Gln
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-09-24
Authors: Chen, Y., Zhang, Q., Bartlam, M.
PDB entry 7d55: Crystal structure of lys170 CBD
Classification: HYDROLASE
Source organism: Enterococcus phage phiM1EF22
Experimental method: X-RAY DIFFRACTION
Resolution: 1.397 Å
Deposited: 2020-09-25
Authors: Zhen, X.
PDB entry 7d56: Structure of the peptidylarginine deiminase type III (PAD3) in complex with Cl-amidine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.175 Å
Deposited: 2020-09-25
Authors: Funabashi, K., Unno, M.
PDB entry 7d57: C-Src in complex with FIIN-2
Classification: TRANSFERASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.104 Å
Deposited: 2020-09-25
Authors: Chen, Y.H., Qu, L.Z.
PDB entry 7d58: cryo-EM structure of human RNA polymerase III in elongating state
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-09-25
Authors: Wang, Q., Wan, F., Lan, P., Wu, J., Lei, M.
PDB entry 7d59: cryo-EM structure of human RNA polymerase III in apo state
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-09-25
Authors: Wang, Q., Wan, F., Lan, P., Wu, J., Lei, M.
PDB entry 7d5a: Crystal Structure of BACE1 in complex with N-{3-[(9S)-7-amino-2,2-difluoro-9-(prop-1-yn-1-yl)-6-oxa-8-azaspiro[3.5]non-7-en-9-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-09-25
Authors: Fujimoto, K., Yoshida, S., Tadano, G., Asada, N., Fuchino, K., Suzuki, S., Matsuoka, E., Yamamoto, T., Yamamoto, S., Ando, S., Kanegawa, N., Tonomura, Y., Ito, H., Moechars, D., Rombouts, F.J.R., Gijsen, H.J.M., Kusakabe, K.I.
PDB entry 7d5b: BACE2 xaperone complex with N-{3-[(5R)-3-amino-2,5-dimethyl-1,1-dioxo-5,6-dihydro-2H-1lambda6,2,4-thiadiazin-5-yl]-4-fluorophenyl}-5-fluoropyridine-2-carboxamide
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2020-09-25
Authors: Fujimoto, K., Yoshida, S., Tadano, G., Asada, N., Fuchino, K., Suzuki, S., Matsuoka, E., Yamamoto, T., Yamamoto, S., Ando, S., Kanegawa, N., Tonomura, Y., Ito, H., Moechars, D., Rombouts, F.J.R., Gijsen, H.J.M., Kusakabe, K.I.
PDB entry 7d5c: IleRS in complex with a tRNA site inhibitor
Classification: LIGASE/INHIBITOR
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 1.895 Å
Deposited: 2020-09-25
Authors: Chen, B., Luo, S., Zhou, H.
PDB entry 7d5d: Left-handed G-quadruplex containing one bulge
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2020-09-25
Authors: Das, P., Ngo, K.H., Winnerdy, F.R., Maity, A., Bakalar, B., Mechulam, Y., Schmitt, E., Phan, A.T.
PDB entry 7d5e: Left-handed G-quadruplex containing two bulges
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.296 Å
Deposited: 2020-09-25
Authors: Das, P., Maity, A., Ngo, K.H., Winnerdy, F.R., Bakalar, B., Mechulam, Y., Schmitt, E., Phan, A.T.
PDB entry 7d5f: Left-handed G-quadruplex containing 3 bulges
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2020-09-25
Authors: Winnerdy, F.R., Das, P., Ngo, K.H., Maity, A., Bakalar, B., Mechulam, Y., Schmitt, E., Phan, A.T.
PDB entry 7d5g: Crystal structure of the CsCE with ligand to have a insight into the catalytic mechanism
Classification: PROTEIN BINDING
Source organism: Caldicellulosiruptor saccharolyticus DSM 8903
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-09-25
Authors: Yang, R.J., Feng, Y.H., Andrew, J.F.
PDB entry 7d5i: Structure of Mycobacterium smegmatis bd complex in the apo-form.
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2020-09-26
Authors: Wang, W., Gong, H., Gao, Y., Zhou, X., Rao, Z.
PDB entry 7d5j: CRYSTAL STRUCTURE OF R220A VARIANT PENA BETA-LACTAMASE FROM BURKHOLDERIA MULTIVORANS
Classification: HYDROLASE
Source organism: Burkholderia multivorans (strain ATCC 17616 / 249)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2020-09-26
Authors: Nukaga, M., Hoshino, T., Papp-Wallace, K.M.
PDB entry 7d5k: CryoEM structure of cotton cellulose synthase isoform 7
Classification: MEMBRANE PROTEIN
Source organism: Gossypium hirsutum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-09-26
Authors: Guan, Z.Y., Xue, Y., Yin, P., Zhang, X.L.
PDB entry 7d5l: Discovery of BMS-986144, a Third Generation, Pan Genotype NS3/4A Protease Inhibitor for the Treatment of Hepatitis C Virus Infection
Classification: VIRAL PROTEIN
Source organism: Hepacivirus C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-09-26
Authors: Ghosh, K., Anumula, R., Kumar, A.
PDB entry 7d5m: Crystal structure of inositol dehydrogenase homolog complexed with NAD+ from Azotobacter vinelandii
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-09-27
Authors: Fukano, K., Ono, T., Suzuki, M., Takenoya, M., Ito, S., Sasaki, Y., Yajima, S.
PDB entry 7d5n: Crystal structure of inositol dehydrogenase homolog complexed with NADH and myo-inositol from Azotobacter vinelandii
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-09-27
Authors: Fukano, K., Ono, T., Suzuki, M., Takenoya, M., Ito, S., Sasaki, Y., Yajima, S.
PDB entry 7d5o: C-Src in complex with TAS-120
Classification: TRANSFERASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2020-09-27
Authors: Qu, L.Z., Chen, Y.H.
PDB entry 7d5p: Structure of NorC transporter in an outward-open conformation in complex with a single-chain Indian camelid antibody
Classification: MEMBRANE PROTEIN
Source organism: Camelus dromedarius; Staphylococcus aureus subsp. aureus COL
Experimental method: X-RAY DIFFRACTION
Resolution: 3.65 Å
Deposited: 2020-09-27
Authors: Kumar, S., Athreya, A., Penmatsa, A.
PDB entry 7d5q: Structure of NorC transporter (K398A mutant) in an outward-open conformation in complex with a single-chain Indian camelid antibody
Classification: MEMBRANE PROTEIN
Source organism: Camelus dromedarius; Staphylococcus aureus subsp. aureus COL
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2020-09-27
Authors: Kumar, S., Athreya, A., Penmatsa, A.
PDB entry 7d5r: Structure of the Ca2+-bound C646A mutant of peptidylarginine deiminase type III (PAD3)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.148 Å
Deposited: 2020-09-28
Authors: Mashimo, R., Akimoto, M., Unno, M.
PDB entry 7d5s: Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2020-09-28
Authors: Du, Y., Zhang, J., An, W., Ye, K.
PDB entry 7d5t: Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2020-09-28
Authors: Du, Y., Zhang, J., An, W., Ye, K.
PDB entry 7d5u: BACE2 xaperone complex with N-{3-[(9S)-7-amino-2,2-difluoro-9-(prop-1-yn-1-yl)-6-oxa-8-azaspiro[3.5]non-7-en-9-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2020-09-28
Authors: Fujimoto, K., Yoshida, S., Tadano, G., Asada, N., Fuchino, K., Suzuki, S., Matsuoka, E., Yamamoto, T., Yamamoto, S., Ando, S., Kanegawa, N., Tonomura, Y., Ito, H., Moechars, D., Rombouts, F.J.R., Gijsen, H.J.M., Kusakabe, K.I.
PDB entry 7d5v: Structure of the C646A mutant of peptidylarginine deiminase type III (PAD3)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.102 Å
Deposited: 2020-09-28
Authors: Akimoto, M., Mashimo, R., Unno, M.
PDB entry 7d5w: Bovine heart cytochrome c oxidase in a catalytic intermediate of O at 1.84 angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2020-09-28
Authors: Tsukihara, T., Shimada, A.
PDB entry 7d5x: Bovine heart cytochrome c oxidase in a catalytic intermediate, IO10, at 1.74 angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2020-09-28
Authors: Tsukihara, T., Shimada, A.
PDB entry 7d5y: Cystein protease domain from MARTX toxin
Classification: TOXIN
Source organism: Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-09-28
Authors: Kim, M.-H., Hwang, J., Choi, S.
PDB entry 7d5z: Crystal structure of EBV gH/gL bound with neutralizing antibody 1D8
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human gammaherpesvirus 4
Experimental method: X-RAY DIFFRACTION
Resolution: 4.2 Å
Deposited: 2020-09-28
Authors: Zhu, Q., Shan, S., Yu, J., Wang, X., Zhang, L., Zeng, M.
PDB entry 7d60: Cryo-EM Structure of human CALHM5 in the presence of rubidium red
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2020-09-28
Authors: Liu, J., Guan, F.H., Wu, J., Wan, F.T., Lei, M., Ye, S.
PDB entry 7d61: Cryo-EM Structure of human CALHM5 in the presence of EDTA
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-09-28
Authors: Liu, J., Guan, F.H., Wu, J., Wan, F.T., Lei, M., Ye, S.
PDB entry 7d62: pGpG-specific phosphodiesterase - PggH from Vibrio cholrae
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-09-28
Authors: Ha, N.-C., Jang, Y.
PDB entry 7d63: Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.3 Å
Deposited: 2020-09-29
Authors: Du, Y., Zhang, J., An, W., Ye, K.
PDB entry 7d64: The crystal structure of SARS-CoV-2 3CLpro with Zinc
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45012 Å
Deposited: 2020-09-29
Authors: Mao, Z.W., Xia, W., Tao, X.
PDB entry 7d65: Cryo-EM Structure of human CALHM5 in the presence of Ca2+
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2020-09-29
Authors: Liu, J., Guan, F.H., Wu, J., Wan, F.T., Lei, M., Ye, S.
PDB entry 7d66: Crystal structure of retroviral protease-like domain of Ddi1 from Toxoplasma gondii
Classification: HYDROLASE
Source organism: Toxoplasma gondii GT1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.126 Å
Deposited: 2020-09-29
Authors: Biswas, I.B., Killivalavan, A.K., Suguna, K.S.
PDB entry 7d68: Cryo-EM structure of the human glucagon-like peptide-2 receptor-Gs protein complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bos taurus; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-09-29
Authors: Sun, W., Chen, L., Zhou, Q., Zhao, L., Zhang, H., Cong, Z., Shen, D., Zhao, F., Zhou, F., Cai, X., Chen, Y., Zhou, Y., Gadgaard, S., van der Velden, W.J., Zhao, S., Jiang, Y., Rosenkilde, M.M., Yang, D., Xu, H.E., Zhang, Y., Wang, M.
PDB entry 7d69: Cryo-EM structure of the nucleosome containing Giardia histones
Classification: NUCLEAR PROTEIN
Source organism: Giardia intestinalis; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2020-09-29
Authors: Sato, S., Takizawa, Y., Kurumizaka, H.
PDB entry 7d6a: Crystal structure of Oryza sativa Os4BGlu18 monolignol beta-glucosidase
Classification: HYDROLASE
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-09-29
Authors: Baiya, S., Pengthaisong, S., Ketudat Cairns, J.R.
PDB entry 7d6b: Crystal structure of Oryza sativa Os4BGlu18 monolignol beta-glucosidase with delta-gluconolactone
Classification: HYDROLASE
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-09-29
Authors: Baiya, S., Pengthaisong, S., Ketudat Cairns, J.R.