LiteFold/PDB huggingface dataset:
PDB entry 8w4l: Crystal structure of closed conformation of human immunoglobulin Fc in presence of EndoSz
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-08-24
Authors: Guan, H.H., Lin, C.C., Hsieh, Y.C., Chen, C.J.
PDB entry 8w4m: Crystal structure of open conformation of human immunoglobulin Fc in presence of EndoSz
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-08-24
Authors: Guan, H.H., Lin, C.C., Hsieh, Y.C., Chen, C.J.
PDB entry 8w4n: Crystal structure of EndoSz mutant D234M, in space group P21, in complex with oligosaccharide G2S1
Classification: HYDROLASE
Source organism: Streptococcus equi subsp. zooepidemicus Sz105
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-08-24
Authors: Guan, H.H., Lin, C.C., Hsieh, Y.C., Chen, C.J.
PDB entry 8w4o: Structure of PSII-FCPII-G/H complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Classification: PHOTOSYNTHESIS
Source organism: Stephanocyclus meneghinianus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-08-24
Authors: Shen, L.L., Li, Z.H., Shen, J.R., Wang, W.D.
PDB entry 8w4p: Structure of PSII-FCPII-I/J/K complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Classification: PHOTOSYNTHESIS
Source organism: Stephanocyclus meneghinianus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2023-08-24
Authors: Shen, L.L., Li, Z.H., Shen, J.R., Wang, W.D.
PDB entry 8w4q: Crystal structure of PDE4D complexed with CX-4945
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-08-24
Authors: Liu, J.Y., Li, M.J., Xu, Y.C.
PDB entry 8w4r: Crystal structure of PDE4D complexed with CVT-313
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-08-24
Authors: Liu, J.Y., Li, M.J., Xu, Y.C.
PDB entry 8w4s: Crystal structure of PDE5A in complex with CVT-313
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.848 Å
Deposited: 2023-08-24
Authors: Liu, J.Y., Li, M.J., Xu, Y.C.
PDB entry 8w4t: Crystal structure of PDE5A in complex with a novel inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.199 Å
Deposited: 2023-08-24
Authors: Liu, J.Y., Li, M.J., Xu, Y.C.
PDB entry 8w4u: human KCNQ2-CaM in complex with PIP2 and HN37
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-25
Authors: Ma, D., Li, X., Guo, J.
PDB entry 8w4v: Crystal structure of human HSP90 in complex with compound 4
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-08-25
Authors: Xu, C., Zhang, X.L., Bai, F.
PDB entry 8w4w: Neutron structure of cellulase Cel6A from Phanerochaete chrysosporium at room temperature
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2023-08-25
Authors: Tachioka, M., Yamaguchi, S., Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Yano, N., Chatake, T., Tamada, T., Takeda, K., Niwa, S., Tanaka, H., Takahashi, S., Inaka, K., Furubayashi, N., Deguchi, S., Samejima, M., Igarashi, K.
PDB entry 8w4x: Neutron structure of cellulase Cel6A from Phanerochaete chrysosporium at room temperature, Enzyme-Product complex
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2023-08-25
Authors: Tachioka, M., Yamaguchi, S., Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Yano, N., Chatake, T., Tamada, T., Takeda, K., Niwa, S., Tanaka, H., Takahashi, S., Inaka, K., Furubayashi, N., Deguchi, S., Samejima, M., Igarashi, K.
PDB entry 8w4y: Neutron structure of cellulase Cel6A from Phanerochaete chrysosporium at room temperature, low-D2O-solvent
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2023-08-25
Authors: Tachioka, M., Yamaguchi, S., Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Yano, N., Chatake, T., Tamada, T., Takeda, K., Niwa, S., Tanaka, H., Takahashi, S., Inaka, K., Furubayashi, N., Deguchi, S., Samejima, M., Igarashi, K.
PDB entry 8w4z: Neutron structure of cellulase Cel6A from Phanerochaete chrysosporium at room temperature, Enzyme-Product complex, H2O solvent
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2023-08-25
Authors: Tachioka, M., Yamaguchi, S., Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Yano, N., Chatake, T., Tamada, T., Takeda, K., Niwa, S., Tanaka, H., Takahashi, S., Inaka, K., Furubayashi, N., Deguchi, S., Samejima, M., Igarashi, K.
PDB entry 8w50: Crystal structure of DNA binding and cleavage core of human topoisomerase 2-alpha in a DNA binding-competent conformation
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2023-08-25
Authors: Chan, N.L., Liu, K.T., Chen, S.F.
PDB entry 8w51: Structure of YchF(H114A) on E.coli 50S ribosomal subunit
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-08-25
Authors: Yu, T., Li, X., Zeng, F.
PDB entry 8w52: p17 protein structure of HIV2 when OLA1 existing
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 2 subtype A (isolate BEN)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-08-25
Authors: Dang, L.L.
PDB entry 8w53: Crystal structure of LbUGT in complex with UDP
Classification: TRANSFERASE
Source organism: Lycium barbarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42816 Å
Deposited: 2023-08-25
Authors: Hu, D., Wang, G.Q.
PDB entry 8w56: Cryo-EM structure of DSR2-DSAD1 state 1
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2023-08-25
Authors: Zhang, H., Li, Z., Li, X.Z.
PDB entry 8w59: Crystal structure of the RING domain of human XIAP treated with arsenic trioxide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.339 Å
Deposited: 2023-08-25
Authors: Zhang, Q., Sun, H., Hu, X., Wang, M.
PDB entry 8w5a: Crystal structure of the RING domain of human XIAP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-08-25
Authors: Zhang, Q., Sun, H., Hu, X., Wang, M.
PDB entry 8w5b: Crystal Structure of the shaft pilin LrpA from Ligilactobacillus ruminis
Classification: CELL ADHESION
Source organism: Ligilactobacillus ruminis ATCC 25644
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-08-26
Authors: Prajapati, A., Palva, A., von Ossowski, I., Krishnan, V.
PDB entry 8w5c: Crystal structure of FGFR4 kinase domain in complex with 8K
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-26
Authors: Zhang, Z.M., Huang, H.S.
PDB entry 8w5d: Cryo-EM structure of Qb-Ab1
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-08-26
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5e: Cryo-EM structure of Qb-Ab4
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-08-26
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5f: Cryo-EM structure of Qb-Ab6
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-26
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5g: Cryo-EM structure of Qb-Ab7
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-08-26
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5h: Cryo-EM structure of Qb-Ab10
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-26
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5i: Cryo-EM structure of Qb-Ab14
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-08-26
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5j: Cryo-EM structure of the yeast TOM core complex (from TOM-TIM23 complex)
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-08-27
Authors: Wang, Q., Guan, Z.Y., Zhuang, J.J., Huang, R., Yin, P.
PDB entry 8w5k: Cryo-EM structure of the yeast TOM core complex crosslinked by BS3 (from TOM-TIM23 complex)
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-08-27
Authors: Wang, Q., Guan, Z.Y., Zhuang, J.J., Huang, R., Yin, P.
PDB entry 8w5l: Cryo-EM structure of Qb-Ab16
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5m: Cryo-EM structure of Qb-Ab17
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5n: Cryo-EM structure of Qb-Ab21
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5o: Cryo-EM structure of Qb-Ab31
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5p: Cryo-EM structure of Qb-Ab40
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5q: Cryo-EM structure of Qb-Ab45
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5r: Cryo-EM structure of Qb-Ab53
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5s: Crystal structure of Annexin A7 mutant
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1162 Å
Deposited: 2023-08-27
Authors: Hua, Z.C., Tang, W.
PDB entry 8w5t: Cryo-EM structure of Qb-Ab57
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Zhu, P.
PDB entry 8w5u: Cryo-EM structure of QbN10F-Ab40
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hou, B.D., Zhu, P.
PDB entry 8w5v: Cryo-EM structure of QbN10K-Ab40
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D.
PDB entry 8w5w: Cryo-EM structure of Qb-Ab8
Classification: IMMUNE SYSTEM
Source organism: Escherichia phage Qbeta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-27
Authors: Bao, K.Y., Li, R.H., Hua, Z.L., Hou, B.D., Zhu, P.
PDB entry 8w5z: Crystal structure of tick tyrosylprotein sulfotransferase reveals the activation mechanism of tick anticoagulant protein madanin
Classification: TRANSFERASE
Source organism: Ixodes; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-08-28
Authors: Yoshimura, M., Teramoto, T., Nishimoto, E., Kakuta, Y.
PDB entry 8w68: Crystal structure of Q9PR55 at pH 6.0 (use NMR model)
Classification: STRUCTURAL PROTEIN
Source organism: Ureaplasma parvum serovar 3 str. ATCC 700970
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-28
Authors: Hsu, M.F., Ko, T.P., Huang, K.F., Chen, Y.R., Huang, J.S., Hsu, S.T.D.
PDB entry 8w69: DegQ-b-casein complex
Classification: HYDROLASE
Source organism: Bos taurus; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-08-28
Authors: Lee, I.-G., Jeon, H.
PDB entry 8w6a: Crystal structure of TAX1BP1 LIR region in complex with GABARAP
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-08-28
Authors: Zhang, M.F., Pan, L.F.
PDB entry 8w6b: crystal structure of TAX1BP1 SKICH domain in complex with RB1CC1 coiled-coil domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-08-28
Authors: Zhang, M.F., Pan, L.F.
PDB entry 8w6c: CryoEM structure of NaDC1 with Citrate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-08-28
Authors: Chi, X., Chen, Y., Li, Y., Dai, L., Zhang, Y., Shen, Y., Chen, Y., Shi, T., Yang, H., Wang, Z., Yan, R.
PDB entry 8w6d: CryoEM structure of NaDC1 in apo state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-08-28
Authors: Chi, X., Chen, Y., Li, Y., Zhang, Y., Shen, Y., Chen, Y., Wang, Z., Yan, R.
PDB entry 8w6e: De novo design of HBC599 binder
Classification: DE NOVO PROTEIN
Source organism: artificial sequences
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-28
Authors: Liang, M.F., Zhu, J.Y., Lu, P.L.
PDB entry 8w6f: Apo structure of HBC binder
Classification: DE NOVO PROTEIN
Source organism: artificial sequences
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-08-28
Authors: Liang, M.F., Zhu, J.Y., Lu, P.L.
PDB entry 8w6g: NaDC1 with inhibitor ACA
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-28
Authors: Chi, X., Chen, Y., Li, Y., Zhang, Y., Shen, Y., Chen, Y., Wang, Z., Yan, R.
PDB entry 8w6h: NaS1 with sulfate - IN/IN state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-28
Authors: Chi, X., Chen, Y., Li, Y., Zhang, Y., Shen, Y., Chen, Y., Wang, Z., Yan, R.
PDB entry 8w6i: Cryo-EM structure of Escherichia coli Str K12 FtsEX complex with ATP-gamma-S in peptidisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-08-29
Authors: Li, J., Xu, X., He, Y., Luo, M.
PDB entry 8w6j: Cryo-EM structure of Escherichia coli Str K12 FtsE(E163Q)X/EnvC complex with ATP in peptidisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-29
Authors: Li, J., Xu, X., He, Y., Luo, M.
PDB entry 8w6k: in situ room temperature Laue crystallography
Classification: LYASE
Source organism: Asplenium bulbiferum subsp. bulbiferum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-29
Authors: Wang, Z.J., Wang, S.S., Pan, Q.Y., Yu, L., Su, Z.H., Yang, T.Y., Wang, Y.Z., Zhang, W.Z., Hao, Q., Gao, X.Y.
PDB entry 8w6l: Crystal structure of the SLA-2*1001 allele and ASFV antigenic peptide at 2.2A resolution
Classification: IMMUNE SYSTEM
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-08-29
Authors: Wang, S.
PDB entry 8w6m: Native strucutre of ferritin from Ureaplasma diversum
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.501 Å
Deposited: 2023-08-29
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w6n: NaS1 with sulfate in IN/OUT state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-29
Authors: Chi, X., Chen, Y., Li, Y., Zhang, Y., Shen, Y., Chen, Y., Wang, Z., Yan, R.
PDB entry 8w6o: NaS1 in IN/IN state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-29
Authors: Chi, X., Chen, Y., Li, Y., Zhang, Y., Shen, Y., Chen, Y., Wang, Z., Yan, R.
PDB entry 8w6p: Crystal structure of dimeric murine SMPDL3A
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-08-29
Authors: Zhang, C., Liu, P., Fan, S., Hou, Y.
PDB entry 8w6q: ferritin from Ureaplasma diversum soaking in Fe2+ solution for 0 min
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.101 Å
Deposited: 2023-08-29
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w6r: murine SMPDL3A bound to sulfate
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-08-29
Authors: Zhang, C., Liu, P., Fan, S.
PDB entry 8w6s: Ferritin from Ureaplasma diversum soaking in Fe2+ solution for 2 min
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2023-08-29
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w6t: NaS1 in IN/OUT state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-08-29
Authors: Chi, X., Chen, Y., Li, Y., Zhang, Y., Shen, Y., Chen, Y., Wang, Z., Yan, R.
PDB entry 8w6u: Ferritin from Ureaplasma diversum soaking in Fe2+ solution for 5 min
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2023-08-29
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w6v: Structural basis of chorismate isomerization by Arabidopsis isochorismate synthase ICS1
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-29
Authors: Su, Z.H., Ming, Z.H.
PDB entry 8w6w: Crystal Structure of C-terminal domain of nucleocapsid protein from SARS-CoV-2 in complex with ampicillin
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-30
Authors: Dhaka, P., Mahto, J.K., Tomar, S., Kumar, P.
PDB entry 8w6x: Neutron structure of [NiFe]-hydrogenase from D. vulgaris Miyazaki F in its oxidized state
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2023-08-30
Authors: Hiromoto, T., Tamada, T.
PDB entry 8w6y: Ferritin from Ureaplasma diversum soaking in Fe2+ solution for 10 min
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.502 Å
Deposited: 2023-08-30
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w6z: Substrate-bound crystal structure of a P450 enzyme DmlH that catalyze intramolecular phenol coupling in the biosynthesis of cihanmycins
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. DM14
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-30
Authors: Fang, C., Zhang, L., Zhu, Y., Zhang, C.
PDB entry 8w70: Structure of Gemtuzumab Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-30
Authors: Heo, Y.S., Choi, S.B.
PDB entry 8w71: Structural basis of chorismate isomerization by Arabidopsis isochorismate synthase ICS1
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.121 Å
Deposited: 2023-08-30
Authors: Su, Z.H., Ming, Z.H.
PDB entry 8w72: Crystal structure of a P450 enzyme DmlH that catalyze intramolecular phenol coupling in the biosynthesis of cihanmycins
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. DM14
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2023-08-30
Authors: Fang, C., Zhang, L., Zhu, Y., Zhang, C.
PDB entry 8w73: Fe-O nanocluster of form-I in the 4-fold channel of Ureaplasma diversum ferritin
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2023-08-30
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w74: Fe-O nanocluster of form-II in the 4-fold channel of Ureaplasma diversum ferritin
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-30
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w75: Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-08-30
Authors: Yang, J., Chen, X., Jin, S., Ding, J.
PDB entry 8w76: Crystal structure of d(CGTATACG)2 duplex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2023-08-30
Authors: Satange, R.B., Peng, C.L., Hou, M.H.
PDB entry 8w77: Human Consensus Olfactory Receptor OR52c in apo state, OR52c only
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2023-08-30
Authors: Choi, C.W., Bae, J., Choi, H.-J., Kim, J.
PDB entry 8w78: Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase in complex with FAD and 2-oxoglutarate
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2023-08-30
Authors: Yang, J., Chen, X., Jin, S., Ding, J.
PDB entry 8w79: Fe-O nanocluster of form-III in the 4-fold channel of Ureaplasma diversum ferritin
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.697 Å
Deposited: 2023-08-30
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w7a: Cryo-EM structure of ClassIII Lanthipeptide modification enzyme PneKC in the presence of GTP.
Classification: ANTIMICROBIAL PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2023-08-30
Authors: Li, Y., Luo, M., Shao, K., Li, J.
PDB entry 8w7b: Fe-O nanocluster of form-IV in the 4-fold channel of Ureaplasma diversum ferritin
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-30
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w7c: Activation of mitochondrial Caseinolytic Protease P (ClpP) induces selective cancer cell lethality
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-08-30
Authors: Jiang, J.-X., Ding, H., Lu, M.-L., Chen, M.-R., Sun, H.-Y., Xiao, Y.-B.
PDB entry 8w7d: Crystal structure of EcPPAT-FR901483 complex
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2023-08-30
Authors: Hara, K., Hashimoto, H., Nakahara, M., Sato, M., Watanabe, K.
PDB entry 8w7e: Design, synthesis and biological evaluations of novel small molecular hyper-activators of human caseinolytic peptidase P (hClpP)
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-30
Authors: Jiang, J.-X., Ding, H., Chen, M.-R., Lu, M.-L., Sun, H.-Y., Xiao, Y.-B.
PDB entry 8w7f: Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase bound with FAD and a sulfate ion
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.299 Å
Deposited: 2023-08-30
Authors: Yang, J., Chen, X., Jin, S., Ding, J.
PDB entry 8w7g: Crystal structure of cytochrome P450 CYP161H12 from Amycolatopsis pretoriensis
Classification: OXIDOREDUCTASE
Source organism: Amycolatopsis pretoriensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-30
Authors: Dong, L.B., Zhang, X.W., Pan, X.M., Li, F.R.
PDB entry 8w7h: Purine Nucleoside Phosphorylase in complex with MMV000848
Classification: TRANSFERASE/INHIBITOR
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-30
Authors: Chung, Z., Lin, J.Q., Lescar, J.
PDB entry 8w7j: Cryo-EM structure of ClassIII Lanthipeptide modification enzyme PneKC with chain A bounded to substrate PneA and GTP.
Classification: ANTIMICROBIAL PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2023-08-30
Authors: Li, Y., Luo, M., Shao, K., Li, J., Li, Z.
PDB entry 8w7l: Cryo-EM structure of ClassIII Lanthipeptide modification enzyme PneKC mutant H522A.
Classification: ANTIMICROBIAL PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-08-30
Authors: Li, Y., Luo, M., Shao, K., Li, J., Li, Z.
PDB entry 8w7m: Yeast replisome in state V
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2023-08-30
Authors: Dang, S., Zhai, Y., Feng, J., Yu, D., Xu, Z.
PDB entry 8w7n: Crystal structure of the in-cell Cry1Aa purified from Bacillus thuringiensis
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2023-08-31
Authors: Tanaka, J., Abe, S., Hayakawa, T., Kojima, M., Yamashita, K., Hirata, K., Ueno, T.
PDB entry 8w7o: Fe-O nanocluster of form-V in the 4-fold channel of Ureaplasma diversum ferritin
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.399 Å
Deposited: 2023-08-31
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w7p: Extracellular domain of a sensor histidine kinase
Classification: SIGNALING PROTEIN
Source organism: Paenibacillus sp. FPU-7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-31
Authors: Itoh, T., Ogawa, T., Hibi, T., Kimoto, H.
PDB entry 8w7q: Fe-O nanocluster of form-VI in the 4-fold channel of Ureaplasma diversum ferritin
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-31
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w7r: H. walsbyi bacteriorhodopsin mutant - W94F
Classification: MEMBRANE PROTEIN
Source organism: Haloquadratum walsbyi DSM 16790
Experimental method: X-RAY DIFFRACTION
Resolution: 2.503 Å
Deposited: 2023-08-31
Authors: Li, G.Y., Chen, J.C., Yang, C.S.
PDB entry 8w7s: Yeast replisome in state IV
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.39 Å
Deposited: 2023-08-31
Authors: Dang, S., Zhai, Y., Feng, J., Yu, D.
PDB entry 8w7t: Fe-O nanocluster of form-VII in the 4-fold channel of Ureaplasma diversum ferritin
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.499 Å
Deposited: 2023-08-31
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w7u: Mutant of ferritin from Ureaplasma diversum (Udif-E164A-E168A) without soaking
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.502 Å
Deposited: 2023-08-31
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w7v: Udif-E164A-E168A soaking in Fe2+ solution for 50 minutes
Classification: METAL BINDING PROTEIN
Source organism: Ureaplasma diversum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.805 Å
Deposited: 2023-08-31
Authors: Wang, W.M., Xi, H.F., Gong, W.J., Ma, D.Y., Wang, H.F.
PDB entry 8w7w: Crystal structure of d(CGTATACG)2 with acridine complex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-08-31
Authors: Huang, S.C., Satange, R.B., Hou, M.H.
PDB entry 8w7x: SPS_Carbonic Anhydrases
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-31
Authors: Chun, I.S., Kim, M.S.
PDB entry 8w7y: Crystal structure of GcCGT in complex with UDP
Classification: TRANSFERASE
Source organism: Gentiana crassicaulis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-08-31
Authors: Zhang, M., Bao, Y.
PDB entry 8w83: HLA-DQ2.5-alpha1 gliadin peptide in complex with DQN0344AE02
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.818 Å
Deposited: 2023-08-31
Authors: Irie, M., Tsushima, T., Teranishi-Ikawa, Y., Takahashi, N., Ishii, S., Okura, Y., Fukami, T.A., Torizawa, T.
PDB entry 8w84: HLA-DQ2.5-alpha2 gliadin peptide in complex with DQN0344AE02
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.105 Å
Deposited: 2023-08-31
Authors: Irie, M., Tsushima, T., Teranishi-Ikawa, Y., Takahashi, N., Ishii, S., Okura, Y., Fukami, T.A., Torizawa, T.
PDB entry 8w85: HLA-DQ2.5-gamma2 gliadin peptide in complex with DQN0385AE01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.769 Å
Deposited: 2023-08-31
Authors: Irie, M., Tsushima, T., Teranishi-Ikawa, Y., Takahashi, N., Ishii, S., Okura, Y., Fukami, T.A., Torizawa, T.
PDB entry 8w86: HLA-DQ2.5-B/C hordein peptide in complex with DQN0385AE02
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.236 Å
Deposited: 2023-08-31
Authors: Irie, M., Tsushima, T., Teranishi-Ikawa, Y., Takahashi, N., Ishii, S., Okura, Y., Fukami, T.A., Torizawa, T.
PDB entry 8w87: Cryo-EM structure of the METH-TAAR1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-01
Authors: Liu, H., Zheng, Y., Wang, Y., Wang, Y., He, X., Xu, P., Huang, S., Yuan, Q., Zhang, X., Wang, S., Xu, H.E., Xu, F.
PDB entry 8w88: Cryo-EM structure of the SEP363856-bound TAAR1-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-09-01
Authors: Liu, H., Zheng, Y., Wang, Y., Wang, Y., He, X., Xu, P., Huang, S., Yuan, Q., Zhang, X., Wang, S., Xu, H.E., Xu, F.
PDB entry 8w89: Cryo-EM structure of the PEA-bound TAAR1-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-01
Authors: Liu, H., Zheng, Y., Wang, Y., Wang, Y., He, X., Xu, P., Huang, S., Yuan, Q., Zhang, X., Wang, S., Xu, H.E., Xu, F.
PDB entry 8w8a: Cryo-EM structure of the RO5256390-TAAR1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-01
Authors: Liu, H., Zheng, Y., Wang, Y., Wang, Y., He, X., Xu, P., Huang, S., Yuan, Q., Zhang, X., Wang, S., Xu, H.E., Xu, F.
PDB entry 8w8b: Cryo-EM structure of SEP-363856 bounded serotonin 1A (5-HT1A) receptor-Gi protein complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-01
Authors: Liu, H., Zheng, Y., Wang, Y., Wang, Y., He, X., Xu, P., Huang, S., Yuan, Q., Zhang, X., Wang, S., Xu, H.E., Xu, F.
PDB entry 8w8d: Structural mechanism of inhibition of the Rho transcription termination factor by Rof
Classification: TRANSCRIPTION
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-01
Authors: Zhang, J., Wang, C.
PDB entry 8w8e: human co-transcriptional RNA capping enzyme RNGTT
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-09-02
Authors: Li, Y., Wang, Q., Xu, Y., Li, Z.
PDB entry 8w8f: human co-transcriptional RNA capping enzyme RNGTT-CMTR1
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-09-02
Authors: Li, Y., Wang, Q., Xu, Y., Li, Z.
PDB entry 8w8g: Crystal structure of human TRF1 with PinX1
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-09-02
Authors: Lei, M., Wu, J.
PDB entry 8w8h: 2-Ketoglutarate-Dependent Dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Bacillus licheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-09-02
Authors: Zheng, C.N., Wei, W.Q.
PDB entry 8w8j: Crystal structure of bacterial prolyl-tRNA synthetase in complex with inhibitor PAA-19
Classification: LIGASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.807 Å
Deposited: 2023-09-03
Authors: Luo, Z., Zhou, H.
PDB entry 8w8k: Crystal structures of HSP90 and the compound Ganetespid in the ""closed"" conformation
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-09-03
Authors: Xu, C., Zhang, X.L., Bai, F.
PDB entry 8w8l: Crystal structure of bacterial prolyl-tRNA synthetase in complex with inhibitor PAA-38
Classification: LIGASE
Source organism: Pseudomonas aeruginosa 148
Experimental method: X-RAY DIFFRACTION
Resolution: 1.824 Å
Deposited: 2023-09-03
Authors: Luo, Z., Zhou, H.
PDB entry 8w8m: Cryo-EM structure of helical filament of MyD88 TIR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-09-04
Authors: Kasai, K., Imamura, K., Narita, A., Makino, F., Miyata, T., Kato, T., Namba, K., Onishi, H., Tochio, H.
PDB entry 8w8n: Thermus thermophilus initiation transcription complex in the pre-translocated state
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.693 Å
Deposited: 2023-09-04
Authors: Li, L., Zhang, Y.
PDB entry 8w8o: Thermus thermophilus initiation complex in the half-translocated state
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.512 Å
Deposited: 2023-09-04
Authors: Li, L., Zhang, Y.
PDB entry 8w8p: Thermus thermophilus initiation transcription complex containing CMPcPP in the post-translocated state
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.165 Å
Deposited: 2023-09-04
Authors: Li, L., Zhang, Y.
PDB entry 8w8q: Cryo-EM structure of the GPR101-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-09-04
Authors: Sun, J.P., Gao, N., Yu, X., Wang, G.P., Yang, F., Wang, J.Y., Yang, Z., Guan, Y.
PDB entry 8w8r: Cryo-EM structure of the AA-14-bound GPR101-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-04
Authors: Sun, J.P., Yu, X., Gao, N., Yang, F., Wang, J.Y., Yang, Z., Guan, Y., Wang, G.P.
PDB entry 8w8s: Cryo-EM structure of the AA14-bound GPR101 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-04
Authors: Sun, J.P., Yu, X., Gao, N., Yang, F., Wang, J.Y., Yang, Z., Guan, Y., Wang, G.P.
PDB entry 8w8t: Crystal structure of human CLEC12A CRD
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-04
Authors: Mori, S., Nagae, M., Yamasaki, S.
PDB entry 8w8u: High-resolution X-ray structure of cellulase Cel6A from Phanerochaete chrysosporium at cryogenic temperature
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.8 Å
Deposited: 2023-09-04
Authors: Tachioka, M., Yamaguchi, S., Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Yano, N., Chatake, T., Tamada, T., Takeda, K., Niwa, S., Tanaka, H., Takahashi, S., Inaka, K., Furubayashi, N., Deguchi, S., Samejima, M., Igarashi, K.
PDB entry 8w8v: High-resolution X-ray structure of cellulase Cel6A from Phanerochaete chrysosporium at cryogenic temperature, Enzyme-Product complex
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.85 Å
Deposited: 2023-09-04
Authors: Tachioka, M., Yamaguchi, S., Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Yano, N., Chatake, T., Tamada, T., Takeda, K., Niwa, S., Tanaka, H., Takahashi, S., Inaka, K., Furubayashi, N., Deguchi, S., Samejima, M., Igarashi, K.
PDB entry 8w8w: Cryo-EM structure of alpha-MSH-MC3R-Gs_Nb35 complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Escherichia coli; Homo sapiens; Lama glama; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-04
Authors: Chen, Q., Fu, J.
PDB entry 8w8x: Cryo-EM structure of beta-MSH-MC3R-Gs_Nb35 complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Escherichia coli; Homo sapiens; Lama glama; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-04
Authors: Chen, Q., Fu, J.
PDB entry 8w8y: Cryo-EM structure of gamma-MSH-MC3R-Gs_Nb35 complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Escherichia coli; Homo sapiens; Lama glama; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-04
Authors: Chen, Q., Fu, J.
PDB entry 8w8z: Escherichia coli ferritin mutant-M52H
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-09-04
Authors: Zhao, G., Zeng, R.
PDB entry 8w90: crystal structure of CD4-D1D2 with Nb457
Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-09-04
Authors: Wang, X.Y., Wang, Y.X.
PDB entry 8w91: Azumapecten Farreri homopolymeric ferritin mutant - H2KE exposed to H2O2 for 3 min
Classification: METAL BINDING PROTEIN
Source organism: Azumapecten farreri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-09-04
Authors: Zhang, T., Jiao, R.
PDB entry 8w92: human H ferritin with 2 Fe(II)/subunit loading
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-09-04
Authors: Zhang, T., Jiao, R.
PDB entry 8w93: Azumapecten Farreri homopolymeric ferritin (ApF) mutant-H2KE
Classification: METAL BINDING PROTEIN
Source organism: Azumapecten farreri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-09-04
Authors: Zhang, T., Jiao, R.
PDB entry 8w94: Azumapecten Farreri homopolymeric ferritin (ApF) mutant-H2KE exposed to H2O2 for 2 s
Classification: METAL BINDING PROTEIN
Source organism: Azumapecten farreri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-04
Authors: Zhang, T., Jiao, R.
PDB entry 8w95: Azumapecten Farreri homopolymeric ferritin (ApF) mutant-H2KE exposed to H2O2 for 20 s
Classification: METAL BINDING PROTEIN
Source organism: Azumapecten farreri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-09-04
Authors: Zhang, T., Jiao, R.
PDB entry 8w96: SmChiA with diacetyl chitobiose
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-04
Authors: Tanaka, Y., Nakamura, A.
PDB entry 8w97: De novo design protein -PK16
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-09-04
Authors: Wang, S., Liu, Y.
PDB entry 8w98: ESTS1 phthalate ester degrading esterase from Sulfobacillus acidophilus in complex with monoethylhexyl phtahalate and 2-ethylhexanol
Classification: HYDROLASE
Source organism: Sulfobacillus acidophilus DSM 10332
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-05
Authors: Verma, S., Kumar, P.
PDB entry 8w9a: CryoEM structure of human PI3K-alpha (P85/P110-H1047R) with QR-7909 binding at an allosteric site
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-09-05
Authors: Huang, X., Ren, X., Zhong, W.
PDB entry 8w9b: CryoEM structure of human PI3K-alpha (P85/P110-H1047R) with QR-8557 binding at an allosteric site
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-05
Authors: Huang, X., Ren, X., Zhong, W.
PDB entry 8w9c: Cryo-EM structure of the Rpd3S complex from budding yeast
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-05
Authors: Wang, C., Zhan, X.
PDB entry 8w9d: Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-09-05
Authors: Wang, C., Zhan, X.
PDB entry 8w9e: Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-05
Authors: Wang, C., Zhan, X.
PDB entry 8w9f: Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 3
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-09-05
Authors: Wang, C., Zhan, X.
PDB entry 8w9g: Hepatitis B virus core protein Y132A mutant in complex with CBT-078
Classification: VIRUS LIKE PARTICLE
Source organism: Hepatitis B virus subtype adyw
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-09-05
Authors: Iwasaki, W., Katsura, K., Tomabechi, Y., Niwa, H., Ogawa, K., Kojima, S., Shirouzu, M.
PDB entry 8w9h: Crystal structure of anti-human CLEC12A antibody 50C1
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-05
Authors: Mori, S., Nagae, M., Yamasaki, S.
PDB entry 8w9i: Crystal structure of bacterial prolyl-tRNA synthetase in complex with inhibitor PAA-5
Classification: LIGASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-09-05
Authors: Luo, Z., Zhou, H.
PDB entry 8w9j: Crystal structure of human CLEC12A ectodomain complexed with 50C1 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-09-05
Authors: Mori, S., Nagae, M., Yamasaki, S.
PDB entry 8w9k: Structure of apo RvY_06210
Classification: HYDROLASE
Source organism: Ramazzottius varieornatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-05
Authors: Kato, S., Fukuda, Y., Inoue, T.
PDB entry 8w9l: Cryo-EM structure of PsSIR2
Classification: IMMUNE SYSTEM
Source organism: Paenibacillus sp. 453mf
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-05
Authors: Yu, G., Liao, F., Li, X., Li, Z., Zhang, H.
PDB entry 8w9m: Cryo-EM structure of the cyanobacterial nitrate transporter NrtBCD in complex with ATP
Classification: MEMBRANE PROTEIN
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-05
Authors: Li, B., Zhou, C.Z., Chen, Y.X., Jiang, Y.L.
PDB entry 8w9n: Structure of AtHKT1;1 in NaCl at 2.7 Angstroms resolution
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-09-05
Authors: Wang, J., Su, N., Guo, J.
PDB entry 8w9o: structure of AtHKT1;1 in KCl at 2.8 Angstroms resolution
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-05
Authors: Wang, J., Su, N., Guo, J.
PDB entry 8w9p: Structure of full Banna virus
Classification: VIRUS
Source organism: Banna virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2023-09-05
Authors: Li, Z., Cao, S.
PDB entry 8w9q: Structure of partial Banna virus
Classification: VIRUS
Source organism: Banna virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2023-09-05
Authors: Li, Z., Cao, S.
PDB entry 8w9r: Structure of Banna virus core
Classification: VIRUS
Source organism: Banna virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2023-09-05
Authors: Li, Z., Cao, S.
PDB entry 8w9s: NAD-dependent dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Amycolatopsis mediterranei S699
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-09-05
Authors: Niu, M., Shen, Y.M.
PDB entry 8w9t: Structure of TaHKT2;1 in NaCl at 2.6 Angstroms resolution
Classification: TRANSPORT PROTEIN
Source organism: Triticum aestivum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-09-05
Authors: Wang, J., Su, N., Guo, J.
PDB entry 8w9u: Crystal structure of CspR from Bacillus subtilis complexed with SAH
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-05
Authors: Lee, Y., Kim, J.