LiteFold/PDB huggingface dataset:
PDB entry 8vqb: Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Classification: VIRAL PROTEIN
Source organism: Sarbecovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-18
Authors: Lee, J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vqc: Structure of the voltage-gated sodium channel NavPas from American Cockroach Periplaneta Americana in complex with scorpion alpha-toxin LqhaIT
Classification: MEMBRANE PROTEIN
Source organism: Leiurus quinquestriatus hebraeus; Periplaneta americana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-01-18
Authors: Phulera, S., Khoshouei, M., Whicher, J., Weihofen, W.A.
PDB entry 8vqd: HER2 S310F in complex with TL1 Fab
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-01-18
Authors: Bang, I., Koide, S.
PDB entry 8vqe: Homodimeric structure of HER2 S310F extracellular region
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-01-18
Authors: Bang, I., Koide, S.
PDB entry 8vqf: X-ray crystal structure of natural Can f 1 in complex with human IgE 1J11 Fab
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Canis lupus familiaris; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.109 Å
Deposited: 2024-01-18
Authors: Khatri, K., Ball, A., Richardson, C.M., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.
PDB entry 8vqg: X-ray crystal structure of Can f 1
Classification: ALLERGEN
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2024-01-18
Authors: Khatri, K., Geoffrey, M.A., Pedersen, L.C., Champan, M.D., Pomes, A., Chruszcz, M.
PDB entry 8vqh: CryoEM structure of BchN-BchB electron acceptor component protein of DPOR
Classification: OXIDOREDUCTASE
Source organism: Cereibacter sphaeroides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-18
Authors: Kashyap, R., Antony, E.
PDB entry 8vqi: CryoEM structure of BchN-BchB electron acceptor component protein of DPOR with Pchlide
Classification: OXIDOREDUCTASE
Source organism: Cereibacter sphaeroides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-01-18
Authors: Kashyap, R., Antony, E.
PDB entry 8vqj: CryoEM structure of DPOR under turnover
Classification: OXIDOREDUCTASE
Source organism: Cereibacter sphaeroides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2024-01-18
Authors: Kashyap, R., Antony, E.
PDB entry 8vqk: YcjN from Escherichia coli
Classification: UNKNOWN FUNCTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-01-18
Authors: Trevino, M.A., Fernandez, D., Sharaf, N.G.
PDB entry 8vql: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with small molecule 6S prime
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-01-18
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 8vqm: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with small molecule 6R prime
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-01-18
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 8vqn: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with small molecule 6R
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-01-18
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 8vqp: Crystal Structure Analysis of EGR1-MIDN
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-01-18
Authors: Seo, H.-S., Dhe-Paganon, S.
PDB entry 8vqq: Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with small molecule 6S
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-01-19
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 8vqr: Crystal structure of chimeric SARS-CoV-2 RBD complexed with chimeric raccoon dog ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Nyctereutes procyonoides; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.565 Å
Deposited: 2024-01-19
Authors: Hsueh, F.-C., Shi, K., Aihara, H., Li, F.
PDB entry 8vqs: Crystal structure of Dehaloperoxidase B in complex with substrate cyclohexene
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-19
Authors: de Serrano, V.S., Yun, D., Ghiladi, R.A.
PDB entry 8vqt: Cryatal structure of Dehaloperoxidase B in complex with substrate 1-methyl-cyclohexene
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-01-19
Authors: de Serrano, V.S., Yun, D., Ghiladi, R.A.
PDB entry 8vqu: Crystal Structure of Dehaloperoxidase B in complex with substrate 1,4-cyclohexadiene
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.751 Å
Deposited: 2024-01-19
Authors: de Seerano, V.S., Yun, D., Ghiladi, R.A.
PDB entry 8vqv: Structure of S. odontolytica ZTP riboswitch bound to m-1-pyridinyl-AICA
Classification: RNA
Source organism: Schaalia odontolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-01-19
Authors: Jones, C.P., Ferre D'Amare, A.R.
PDB entry 8vqw: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (CoA bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-01-19
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vqx: Structure of SARS-CoV-2 main protease with potent peptide aldehyde inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-01-19
Authors: Dougan, D.R., Lane, W.
PDB entry 8vqy: Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus methaqualone
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2024-01-19
Authors: Chojnacka, W., Teng, J., Kim, J.J., Jensen, A.A., Hibbs, R.E.
PDB entry 8vqz: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (CMP bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-01-19
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vr0: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (GMP bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-01-19
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vr1: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (CTP bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-01-19
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vr2: Crystal structure of the Pcryo_0617 oxidoreductase/decarboxylase from Psychrobacter cryohalolentis K5 in the presence of NAD and UDP
Classification: OXIDOREDUCTASE
Source organism: Psychrobacter cryohalolentis K5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-01-20
Authors: Bockhaus, N.J., Thoden, J.B., Holden, H.M.
PDB entry 8vr3: crystal structure of the Pcryo_0618 aminotransferase from Psychrobacter cryohalolentis K5 in the presence of its internal aldimine
Classification: TRANSFERASE
Source organism: Psychrobacter cryohalolentis K5
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-20
Authors: Bockhaus, N.J., Thoden, J.B., Holden, H.M.
PDB entry 8vr4: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-20
Authors: Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8vr5: crystal structure of the Pcryo_0618 aminotransferase from Psychrobacter cryohalolentis K5 in the presence of PMP and glutamate
Classification: TRANSFERASE
Source organism: Psychrobacter cryohalolentis K5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-01-20
Authors: Bockhaus, N.J., Thoden, J.B., Holden, H.M.
PDB entry 8vr6: crystal structure of the Pcryo_0619 N-acetryltransferase from Psychrobacter cryohalolentis K5 in the presence of CoA-disulfide
Classification: TRANSFERASE
Source organism: Psychrobacter cryohalolentis K5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-01-20
Authors: Dunsirn, M.M., Bockhaus, N.J., Thoden, J.B., Holden, H.M.
PDB entry 8vr7: crystal structure of the Pcryo_0619 N-acetyltransferase from Psychrobacter cryohalolentis K5 int he presence of acetyl coenzyme A
Classification: TRANSFERASE
Source organism: Psychrobacter cryohalolentis K5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-01-20
Authors: Dunsirn, M.M., Bockhaus, N.J., Thoden, J.B., Holden, H.M.
PDB entry 8vr8: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-Clm
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-01-20
Authors: Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8vr9: Structure of a synthetic antibody in complex with a class I MHC presenting a hapten-peptide conjugate
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-01-20
Authors: Maso, L., Bang, I., Koide, S.
PDB entry 8vra: Structure of a synthetic antibody in complex with a class I MHC presenting a hapten-peptide conjugate
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-01-20
Authors: Maso, L., Bang, I., Koide, S.
PDB entry 8vrb: Structure of a synthetic antibody in complex with a class I MHC presenting a hapten-peptide conjugate
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-01-20
Authors: Maso, L., Bang, I., Koide, S.
PDB entry 8vrc: Tetrahymena thermophila MLP1 RRM domain
Classification: RNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: SOLUTION NMR
Deposited: 2024-01-21
Authors: Donaldson, L.W.
PDB entry 8vrd: Rigid body fitted model for free recombinant gamma tubulin ring complex.
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2024-01-21
Authors: Aher, A., Urnavicius, L., Kapoor, T.M.
PDB entry 8vre: Structure of PYCR1 complexed with NADH and N-formyl-L-proline
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-01-21
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8vrf: Sucrose-phosphate synthase-like protein from Leishmania major
Classification: SUGAR BINDING PROTEIN
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-01-21
Authors: Gorman, M.A., Parker, M.W., McConville, M.J.
PDB entry 8vrg: E. coli peptidyl-prolyl cis-trans isomerase containing delta1-monofluoro-leucines
Classification: ISOMERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2024-01-22
Authors: Frkic, R.L., Jackson, C.J.
PDB entry 8vrh: E. coli peptidyl-prolyl cis-trans isomerase containing delta2-monofluoro-leucines
Classification: ISOMERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-01-22
Authors: Frkic, R.L., Jackson, C.J.
PDB entry 8vri: E. coli peptidyl-prolyl cis-trans isomerase containing difluoro-leucines
Classification: ISOMERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-01-22
Authors: Frkic, R.L., Jackson, C.J.
PDB entry 8vrj: Rigid body fitted model for gamma tubulin ring complex capped microtubule
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.7 Å
Deposited: 2024-01-22
Authors: Aher, A., Urnavicius, L., Kapoor, T.M.
PDB entry 8vrk: Rigid body fitted model for refined density map of gamma tubulin ring complex capped microtubule
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.5 Å
Deposited: 2024-01-22
Authors: Aher, A., Urnavicius, L., Kapoor, T.M.
PDB entry 8vrl: Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-01-22
Authors: Majumdar, S., Koripella, R.K., Sharma, M.R., Manjari, S.R., Banavali, N.K., Agrawal, R.K.
PDB entry 8vrm: Crystal structure of the Pcryo_0619 N-acetyltransferase from Psychrobacter cryohalolentis K5
Classification: TRANSFERASE
Source organism: Psychrobacter cryohalolentis K5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-01-22
Authors: Dunsirn, M.M., Bockhaus, N.J., Thoden, J.B., Holden, H.M.
PDB entry 8vrn: Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus PPTQ
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-01-22
Authors: Chojnacka, W., Teng, J., Kim, J.J., Jensen, A.A., Hibbs, R.E.
PDB entry 8vrp: HIV-CA Disulfide linked Hexamer bound to 4-Quinazolinone Scaffold inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-01-22
Authors: Goldstone, D.C., Walsham, L.
PDB entry 8vrq: Rns pocket mutant - R75A
Classification: DNA BINDING PROTEIN
Source organism: Escherichia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-22
Authors: Tolbert, J.D., Midgett, C.R., Kull, F.J.
PDB entry 8vrr: 4H11-scFv antibody
Classification: PEPTIDE BINDING PROTEIN,IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-01-22
Authors: Lee, K., Perry, K., Yeku, O.O., Spriggs, D.R.
PDB entry 8vrs: Mucin 16 peptide fused to MBP in complex with 4H11-scFv antibody
Classification: ONCOPROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2024-01-22
Authors: Lee, K., Perry, K., Yeku, O.O., Spriggs, D.R.
PDB entry 8vrt: The structure of LSD1-CoREST-HDAC1 in complex with KBTBD4R313PRR mutant
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-01-22
Authors: Xie, X., Liau, B., Zheng, N.
PDB entry 8vru: GII.4c apo norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Norovirus GII.4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2024-01-22
Authors: Kher, G., Prewitt, A., Pancera, M., Hansman, G.
PDB entry 8vrv: GII.4c H2-tri HBGA norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Norovirus GII.4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2024-01-22
Authors: Kher, G., Prewitt, A., Pancera, M., Hansman, G.
PDB entry 8vrw: Cryo-EM structure of human invariant chain in complex with HLA-DR15
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-01-22
Authors: Wang, N., Caveney, N.A., Jude, K.M., Garcia, K.C.
PDB entry 8vrx: Bile salt hydrolase from Arthrobacter citreus
Classification: HYDROLASE
Source organism: Arthrobacter citreus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-01-22
Authors: Ruzzini, A., Dhindwal, P.
PDB entry 8vs0: A structural study of selectivity mechanisms for JNK3 and p38 alpha with indazole scaffold probing compounds
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2024-01-23
Authors: Park, H., Feng, Y.
PDB entry 8vs5: Structure of catalytic domain of telomere resolvase, ResT, from Borrelia garinii
Classification: DNA BINDING PROTEIN
Source organism: Borreliella garinii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.796 Å
Deposited: 2024-01-23
Authors: Semper, C., Savchenko, A., Watanabe, N., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8vs6: L-TGF-b3/avb8
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-01-23
Authors: Jin, M., Cheng, Y., Nishimura, S.L.
PDB entry 8vs7: Crystal structure of ADI-19425 Fab in complex with anti-idiotypic 2C1 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-01-23
Authors: Kher, G., Homad, L.J., McGuire, A.T., Pancera, M.
PDB entry 8vs8: Crystal structure of ADI-19425 Fab in complex with anti-idiotypic 1D3 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2024-01-23
Authors: Kher, G., Homad, L.J., McGuire, A.T., Pancera, M.
PDB entry 8vs9: Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-01-23
Authors: Teran, D., Zhang, Y., Korostelev, A.A.
PDB entry 8vsa: Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-01-23
Authors: Teran, D., Zhang, Y., Korostelev, A.A.
PDB entry 8vsb: L-TGF-b3/GARP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-01-23
Authors: Jin, M., Cheng, Y., Nishimura, S.L.
PDB entry 8vsc: L-TGF-b1/GARP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-23
Authors: Jin, M., Cheng, Y., Nishimura, S.L.
PDB entry 8vsd: avb8/L-TGF-b1/GARP
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-23
Authors: Jin, M., Cheng, Y., Nishimura, S.L.
PDB entry 8vse: Cryo-EM structure of human CD45 extracellular region in complex with adenoviral protein E3/49K
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human adenovirus 19a
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-01-23
Authors: Borowska, M.T., Caveney, N.A., Jude, K.M., Garcia, K.C.
PDB entry 8vsf: UIC-13-BPE extension of UIC-1
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2024-01-24
Authors: Ganatra, P.
PDB entry 8vsg: SARS-CoV-2 main protease with covalent inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.071 Å
Deposited: 2024-01-24
Authors: Bell, J.A., Bandera, A.M.
PDB entry 8vsh: Crystal structure of Shewanella benthica Group 1 truncated hemoglobin C51S C71S variant with trans heme D
Classification: HEME-BINDING PROTEIN
Source organism: Shewanella benthica KT99
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-24
Authors: Lecomte, J.T.J., Martinez, J.E., Schlessman, J.L., Schultz, T.D., Siegler, M.A.
PDB entry 8vsi: Mechanistic Insights Revealed by YbtPQ in the Occluded State
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-24
Authors: Hu, W., Parkinson, C., Zheng, H.
PDB entry 8vsj: Engineered peptide-specific binder in complex with HLA-DR1/CLIP
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Metamycoplasma arthritidis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2024-01-24
Authors: Jude, K.M., Yang, X., Du, H., Kassardjian, A., Julien, J.-P., Huang, P., Garcia, K.C.
PDB entry 8vsk: Crystal structure of Dehaloperoxidase A in complex with substrate 2,4-dibromophenol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.515 Å
Deposited: 2024-01-24
Authors: Aktar, M.S., de Serrano, V.S., Ghiladi, R.A., Franzen, S.
PDB entry 8vsl: Binary structure of 14-3-3 sigma and ARAF phosphopeptide (pS214)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-01-24
Authors: Vickery, H.R., Virta, J.M., Pennings, M., Konstantinidou, M., van den Oetelaar, M., Neitz, R.J., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 8vsm: Ternary structure of 14-3-3 sigma, ARAF phosphopeptide (pS214) and compound 78 (1124378)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-01-24
Authors: Vickery, H.R., Virta, J.M., Pennings, M., Konstantinidou, M., van den Oetelaar, M., Neitz, R.J., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 8vsn: Ternary structure of 14-3-3 sigma, ARAF phosphopeptide (pS214) and compound 79 (1124379)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-01-24
Authors: Vickery, H.R., Virta, J.M., Pennings, M., Konstantinidou, M., van den Oetelaar, M., Neitz, R.J., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 8vso: Ternary structure of 14-3-3 sigma, BRAF phosphopeptide (pS365) and compound 78 (1124378)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-01-24
Authors: Vickery, H.R., Virta, J.M., Pennings, M., Konstantinidou, M., van den Oetelaar, M., Neitz, R.J., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 8vsp: Cryo-EM structure of human invariant chain in complex with HLA-DQ
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-01-24
Authors: Wang, N., Caveney, N.A., Jude, K.M., Garcia, K.C.
PDB entry 8vsq: Crystal structure of Esub1
Classification: UNKNOWN FUNCTION
Source organism: Streptococcus pyogenes MGAS315
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-01-24
Authors: Muna, T.H., Prehna, G.
PDB entry 8vsr: Co-crystal structure of Prx with Esub1
Classification: VIRAL PROTEIN
Source organism: Streptococcus pyogenes MGAS315
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-01-24
Authors: Muna, T.H., Prehna, G.
PDB entry 8vst: Rns mutant H20A/R75A
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-24
Authors: Tolbert, J.D., Midgett, C.R., Kull, F.J.
PDB entry 8vsu: Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-01-24
Authors: Chan, L.M., Courteau, B.J., Verba, K.A.
PDB entry 8vsv: Cryo-EM structure of SINV/EEEV in complex with a potently neutralizing intact human antibody EEEV-373
Classification: VIRUS
Source organism: Eastern equine encephalitis virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-01-24
Authors: Bandyopadhyay, A., Klose, T., Kuhn, R.J.
PDB entry 8vsw: 4-MERCAPTOPHENOL-ALPHA3C
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2024-01-24
Authors: Tommos, C.
PDB entry 8vsx: NMR Structure of GCAP5 R22A
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: SOLUTION NMR
Deposited: 2024-01-24
Authors: Cudia, D.L., Ames, J.B.
PDB entry 8vsy: Bile salt hydrolase from Arthrobacter citreus with covalent inhibitor AAA-10 bound
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Arthrobacter citreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-01-24
Authors: Dhindwal, P., Ruzzini, A.
PDB entry 8vsz: CryoEM structure of human GABAA receptor pi (GABRP) apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-01-25
Authors: Wang, Y., Klein, D.
PDB entry 8vt0: SPOT-RASTR - a cryo-EM specimen preparation technique that overcomes problems with preferred orientation and the air/water interface
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-01-25
Authors: Esfahani, B.G., Randolph, P., Peng, R., Grant, T., Stroupe, M.E., Stagg, S.M.
PDB entry 8vt2: cryo-EM structure of HMPV (MPV-2c)
Classification: VIRAL PROTEIN
Source organism: Human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-01-25
Authors: Yu, X., Langedijk, J.P.M.
PDB entry 8vt3: cryo-EM structure of HMPV (MPV-2cREKR)
Classification: VIRAL PROTEIN
Source organism: Human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-01-25
Authors: Yu, X., Langedijk, J.P.M.
PDB entry 8vt4: Cryo-EM structure of human ABC transporter ABCC1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2024-01-25
Authors: Shinde, O., Li, P.
PDB entry 8vt5: Crystal structure of human menRNA
Classification: RNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-01-25
Authors: Skeparnias, I., Zhang, J.
PDB entry 8vt6: A structural study of selectivity mechanisms for JNK3 and p38 alpha with indazole scaffold probing compounds
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-01-25
Authors: Park, H., Feng, Y.
PDB entry 8vt7: Structure of the gamma tubulin ring complex nucleated microtubule protofilament.
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2024-01-25
Authors: Aher, A., Urnavicius, L., Kapoor, T.M.
PDB entry 8vt8: UIC-13-BIF-A4Dab NBD-Cl binding
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2024-01-26
Authors: Ganatra, P.
PDB entry 8vt9: WT SthK in the presence of PIP2 and cAMP
Classification: TRANSPORT PROTEIN
Source organism: Spirochaeta thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-26
Authors: Schmidpeter, P.A.M., Thon, O., Nimigean, C.M.
PDB entry 8vta: SthK R120A in the presence of PIP2 and cAMP
Classification: TRANSPORT PROTEIN
Source organism: Spirochaeta thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-26
Authors: Schmidpeter, P.A.M., Thon, O., Nimigean, C.M.
PDB entry 8vtb: SthK R120A R124A in the presence of PIP2 and cAMP
Classification: TRANSPORT PROTEIN
Source organism: Spirochaeta thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-01-26
Authors: Schmidpeter, P.A.M., Thon, O., Nimigean, C.M.
PDB entry 8vtc: Crystal structure of Mycobacterium avium dihydrofolate reductase in complex with NADPH and trimethoprim
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Mycobacterium avium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-26
Authors: Erlandsen, H., Krucinska, J., Wright, D.
PDB entry 8vtd: Co-structure of the Fab of the anti-TIGIT Vibostolimab antibody with its antigen
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2024-01-26
Authors: Fischmann, T.
PDB entry 8vte: Co-structure of the Fab of the anti-TIGIT Vibostolimab antibody with its antigen
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-01-26
Authors: Fischmann, T., Bahmanjah, S.
PDB entry 8vtf: A structural study of selectivity mechanisms for JNK3 and p38 alpha with indazole scaffold probing compounds
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-26
Authors: Park, H., Feng, Y.
PDB entry 8vth: DUF2169 domain-containing protein from Vibrio xiamenensis
Classification: CHAPERONE
Source organism: Vibrio xiamenensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-01-26
Authors: Sachar, K., Whitney, J.C., Prehna, G., Kim, Y.
PDB entry 8vti: Latrophilin-3 (ADGRL3) HormR and GAIN domains in the context of the holoreceptor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-01-26
Authors: Kordon, S.P., Bandekar, S.J., Arac, D.
PDB entry 8vtj: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-cyanophenylalanine
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2024-01-26
Authors: Mathews, I., Tran, K., Boxer, S.G.
PDB entry 8vtk: Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2024-01-26
Authors: Tran, K., Mathews, I., Boxer, S.G.
PDB entry 8vtl: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methoxyphenylalanine
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2024-01-26
Authors: Tran, K., Mathews, I., Boxer, S.G.
PDB entry 8vtm: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-bromophenylalanine
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2024-01-26
Authors: Tran, K., Mathews, I., Boxer, S.G.
PDB entry 8vtn: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.57 Å
Deposited: 2024-01-26
Authors: Tran, K., Mathews, I., Boxer, S.G.
PDB entry 8vto: Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methylphenylalanine
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2024-01-26
Authors: Tran, K., Mathews, I., Boxer, S.G.
PDB entry 8vtp: Structure of FabS1CE-EPR-1, a high affinity antibody for the erythropoeitin receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-01-26
Authors: Singer, A.U., Bruce, H.A., Blazer, L., Adams, J.J., Sidhu, S.S.
PDB entry 8vtq: Crystal Structure of human Tryptophan 2,3-dioxygenase in complex with PPN3 inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-01-26
Authors: Geeraerts, Z., Yeh, S.-R.
PDB entry 8vtr: Structure of FabS1CE3-EPR-1, an elbow-locked high affinity antibody for the erythropoeitin receptor (orthorhombic form)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-01-26
Authors: Singer, A.U., Bruce, H.A., Pavlenco, A., Ploder, L., Luu, G., Blazer, L., Adams, J.J., Sidhu, S.S.
PDB entry 8vts: Meis1 homeobox domain bound to paromomycin fragment
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-01-27
Authors: Tomchick, D.R., Ahmed, M.S., Nguyen, N.U.N.
PDB entry 8vtt: Meis1 homeobox domain bound to neomycin fragment
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-01-27
Authors: Tomchick, D.R., Ahmed, M.S., Nguyen, N.U.N., Sadek, H.A.
PDB entry 8vtu: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-27
Authors: Aleksandrova, E.V., Ma, C.-X., Klepacki, D., Alizadeh, F., Vazquez-Laslop, N., Liang, J.-H., Polikanov, Y.S., Mankin, A.S.
PDB entry 8vtv: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2024-01-27
Authors: Aleksandrova, E.V., Ma, C.-X., Klepacki, D., Alizadeh, F., Vazquez-Laslop, N., Liang, J.-H., Polikanov, Y.S., Mankin, A.S.
PDB entry 8vtw: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution
Classification: RIBOSOME
Source organism: Escherichia coli K-12; Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-01-27
Authors: Aleksandrova, E.V., Ma, C.-X., Klepacki, D., Alizadeh, F., Vazquez-Laslop, N., Liang, J.-H., Polikanov, Y.S., Mankin, A.S.
PDB entry 8vtx: Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-27
Authors: Aleksandrova, E.V., Ma, C.-X., Klepacki, D., Alizadeh, F., Vazquez-Laslop, N., Liang, J.-H., Polikanov, Y.S., Mankin, A.S.
PDB entry 8vty: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli K-12; Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-01-27
Authors: Aleksandrova, E.V., Ma, C.-X., Klepacki, D., Alizadeh, F., Vazquez-Laslop, N., Liang, J.-H., Polikanov, Y.S., Mankin, A.S.
PDB entry 8vtz: Crystal structure of Aquifex aeolicus Trbp111
Classification: RNA BINDING PROTEIN
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-27
Authors: Umuhire Juru, A., Zhang, J.
PDB entry 8vu0: Co-crystal structure of Aquifex aeolicus Trbp111 in complex with E. coli tRNA-Ile
Classification: RNA BINDING PROTEIN/RNA
Source organism: Aquifex aeolicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2024-01-27
Authors: Umuhire Juru, A., Zhang, J.
PDB entry 8vu1: Structure of FabS1CE3-EPR-1, an elbow-locked high affinity antibody for the erythropoeitin receptor (trigonal form)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2024-01-27
Authors: Singer, A.U., Bruce, H.A., Pavlenco, A., Ploder, L., Luu, G., Blazer, L., Adams, J.J., Sidhu, S.S.
PDB entry 8vu3: Cryo-EM structure of cyanobacterial PSI with bound platinum nanoparticles
Classification: PHOTOSYNTHESIS
Source organism: Thermostichus lividus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2024-01-28
Authors: Gisriel, C.J., Malavath, T., Brudvig, G.W., Utschig, L.M.
PDB entry 8vu4: Structure of FabS1CE4-EPR-1, an elbow-locked high affinity antibody for the erythropoeitin receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-01-28
Authors: Singer, A.U., Bruce, H.A., Pavlenco, A., Ploder, L., Luu, G., Blazer, L., Adams, J.J., Sidhu, S.S.
PDB entry 8vu5: Cryo-EM structure of MPL bound to TPO
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-01-28
Authors: Bratkowski, M., Hao, Q., Paddock, M.
PDB entry 8vu6: Wheat Germ Agglutinin (WGA) domain A
Classification: SUGAR BINDING PROTEIN
Source organism: Triticum aestivum
Experimental method: SOLUTION NMR
Deposited: 2024-01-29
Authors: Titaux-Delgado, G.A., del Rio-Portilla, F., Garcia-Hernandez, E.
PDB entry 8vu7: Wheat Germ Agglutinin (WGA) domain C
Classification: SUGAR BINDING PROTEIN
Source organism: Triticum aestivum
Experimental method: SOLUTION NMR
Deposited: 2024-01-29
Authors: Melchor-Meneses, C.M., del Rio-Portilla, F., Garcia-Hernandez, E.
PDB entry 8vu8: Wheat Germ Agglutinin (WGA) domain D
Classification: SUGAR BINDING PROTEIN
Source organism: Triticum aestivum
Experimental method: SOLUTION NMR
Deposited: 2024-01-29
Authors: Titaux-Delgado, G.A., del Rio-Portilla, F., Garcia-Hernandez, E.
PDB entry 8vu9: Crystal structure of wild-type HIV-1 reverse transcriptase in complex with non-nucleoside inhibitor 5i3
Classification: VIRAL PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Human immunodeficiency virus type 1 BH10
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-01-29
Authors: Rumrill, S., Ruiz, F.X., Arnold, E.
PDB entry 8vua: Structure of FabS1CE1-EPR-1, an elbow-locked high affinity antibody for the erythropoeitin receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.27 Å
Deposited: 2024-01-29
Authors: Singer, A.U., Bruce, H.A., Pavlenco, A., Ploder, L., Luu, G., Blazer, L., Adams, J.J., Sidhu, S.S.
PDB entry 8vub: Crystal structure of wild-type HIV-1 reverse transcriptase in complex with non-nucleoside inhibitor 5e2
Classification: VIRAL PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-01-29
Authors: Rumrill, S., Ruiz, F.X., Arnold, E.
PDB entry 8vuc: Structure of FabS1CE2-EPR-1, an elbow-locked high affinity antibody for the erythropoeitin receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-29
Authors: Singer, A.U., Bruce, H.A., Pavlenco, A., Ploder, L., Luu, G., Blazer, L., Adams, J.J., Sidhu, S.S.
PDB entry 8vud: Crystal structure of APOBEC3F-CD1
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.599 Å
Deposited: 2024-01-29
Authors: Yang, H.J., Li, S.-X., Pacheco, J., Chen, X.S.
PDB entry 8vue: L5A7 Fab bound to Indonesia2005 Hemagglutinin
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2024-01-29
Authors: Olia, A.S., Gorman, J., Kwong, P.D.
PDB entry 8vuf: Crystal structure of GH9 (K101P, K103N, V108I) HIV-1 reverse transcriptase in complex with non-nucleoside inhibitor 5i3
Classification: VIRAL PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-01-29
Authors: Rumrill, S., Ruiz, F.X., Arnold, E.
PDB entry 8vug: Crystal Structure of human Tryptophan 2,3-dioxygenase in complex with PPN1 inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-01-29
Authors: Geeraerts, Z., Yeh, S.
PDB entry 8vuh: Human GluN1-2A IgG 003-102 splayed conformation
Classification: MEMBRANE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.42 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vui: Structure of FabS1CE-EPR-1, an elbow-locked Fab, in complex with the erythropoeitin receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-01-29
Authors: Singer, A.U., Bruce, H.A., Blazer, L., Adams, J.J., Sidhu, S.S.
PDB entry 8vuj: Human GluN1-2A with Fab 003-102
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vuk: The crystal structure of Brucella abortus FtrB at 1.3 Angstrom resolution
Classification: METAL BINDING PROTEIN
Source organism: Brucella abortus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-01-29
Authors: Roy, S., Garcia, B.L.
PDB entry 8vul: Human GluN1-2A with Fab 003-102 Local refinement of ATD
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vum: Crystal structure of GH9 (K101P, K103N, V108I) HIV-1 reverse transcriptase in complex with non-nucleoside inhibitor 5e2
Classification: VIRAL PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Human immunodeficiency virus 1; Human immunodeficiency virus type 1 BH10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-01-29
Authors: Rumrill, S., Ruiz, F.X., Arnold, E.
PDB entry 8vun: Human GluN1-2A With Fab 008-218
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vuo: Crystal structure of SARS-CoV-2 nsp16/nsp10 in complex with Cap-1 RNA
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-01-29
Authors: Misra, A., Rahisuddin, R., Gupta, Y.K.
PDB entry 8vup: E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-01-29
Authors: Kimbrough, E.M., Dunham, C.M., Nguyen, H.A.
PDB entry 8vuq: Human GluN1-2A with Fab 008-218 Local refinement of ATD
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vur: Human GluN1-2A with IgG 003-102 WT conformation
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vus: Human GluN1-2A with IgG 007-168
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vut: Human GluN1-2A with IgG 008-218
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vuu: Human GluN1-2B with Fab 007-168
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vuv: Human GluN1-2B with Fab 007-168 Local refinement of ATD
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2024-01-29
Authors: Michalski, K., Furukawa, H.
PDB entry 8vuw: ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Classification: TRANSPORT PROTEIN
Source organism: Dickeya chrysanthemi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-01-29
Authors: Petroff II, J.T., Deng, Z., Rau, M.J., Fitzpatrick, J.A.J., Yuan, P., Cheng, W.W.L.
PDB entry 8vux: Cryo-EM structure of human ABC transporter (hABCC1) bound to cGAMP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2024-01-30
Authors: Shinde, O., Li, P.
PDB entry 8vuy: Rat GluN1-2B with Fab 003-102
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2024-01-30
Authors: Michalski, K., Furukawa, H.
PDB entry 8vuz: L5A7 Fab bound to 28H6E11 anti-idiotype Fab
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2024-01-30
Authors: Olia, A.S., Morano, N.C., Kwong, P.D.
PDB entry 8vv0: CryoEM structure of human GABAA receptor pi (GABRP) in complex with GABA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-30
Authors: Wang, Y., Klein, D.
PDB entry 8vv1: Estrogen receptor alpha ligand binding domain in complex with palazestrant
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.196 Å
Deposited: 2024-01-30
Authors: Ng, R.A., Barratt, S., Parisian, A., Palanisamy, G., Sun, R., Robello, B., Pena, G., Sapugay, J., Yeghikyan, D., Duncan, A., Andersen, S.E., Chawla, R., Rich, B., Hearn, B., Harmon, C., Hodges-Gallagher, L., Kushner, P.J., Greene, G.L., Myles, D.C., Fanning, S.W.
PDB entry 8vv2: Cryo-EM Structure of DHX36 bound to a RNA G-quadruplex derived from the cMyc G-quadruplex, Class 1
Classification: Hydrolase/RNA
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-01-30
Authors: Banco, M.T., Ferre-D'Amare, A.R.