LiteFold/PDB huggingface dataset:
PDB entry 3vol: X-ray Crystal Structure of PAS-HAMP Aer2 in the CN-bound Form
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.399 Å
Deposited: 2012-01-27
Authors: Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
PDB entry 3vom: Structure of a putative phosphoserine aminotransferase from mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-01-30
Authors: Coulibaly, F., Lassalle, E., Baker, H.M., Baker, E.N.
PDB entry 3von: Crystalstructure of the ubiquitin protease
Classification: HYDROLASE/LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2012-01-30
Authors: Sato, Y., Fukai, S.
PDB entry 3voo: Cytochrome P450SP alpha (CYP152B1) mutant A245E
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2012-01-31
Authors: Fujishiro, T., Shoji, O., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 3vop: Structure of Vaccinia virus A27
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-01-31
Authors: Chang, T.H., Ko, T.P., Hsieh, F.L., Wang, A.H.J.
PDB entry 3voq: Crystal structure of the pleckstrin homology domain of human Sin1, a TORC2 subunit
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-01-31
Authors: Pan, D., Matsuura, Y.
PDB entry 3vor: Crystal Structure Analysis of the CofA
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 2012-02-06
Authors: Fukakusa, S., Kawahara, K., Nakamura, S., Iwasita, T., Baba, S., Nishimura, M., Kobayashi, Y., Honda, T., Iida, T., Taniguchi, T., Ohkubo, T.
PDB entry 3vos: Crystal structure of Aspartate semialdehyde dehydrogenase Complexed With glycerol and sulfate From Mycobacterium tuberculosis H37Rv
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2012-02-07
Authors: Vyas, R., Tewari, R., Weiss, M.S., Karthikeyan, S.
PDB entry 3vot: Crystal structure of L-amino acid ligase from Bacillus licheniformis
Classification: LIGASE
Source organism: Bacillus licheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-02-08
Authors: Suzuki, M., Takahashi, Y., Noguchi, A., Arai, T., Yagasaki, M., Kino, K., Saito, J.
PDB entry 3vou: The crystal structure of NaK-NavSulP chimera channel
Classification: TRANSPORT PROTEIN
Source organism: Bacillus weihenstephanensis; Sulfitobacter sp. NAS-14.1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2012-02-10
Authors: Irie, K., Shimomura, T., Fujiyoshi, Y.
PDB entry 3vov: Crystal Structure of ROK Hexokinase from Thermus thermophilus
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2012-02-21
Authors: Nakamura, T., Kashima, Y., Mine, S., Oku, T., Uegaki, K.
PDB entry 3vow: Crystal Structure of the Human APOBEC3C having HIV-1 Vif-binding Interface
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2012-02-22
Authors: Kitamura, S., Suzuki, A., Watanabe, N., Iwatani, Y.
PDB entry 3vox: X-ray Crystal Structure of Wild Type HrtR in the Apo Form
Classification: TRANSCRIPTION
Source organism: Lactococcus lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2012-02-23
Authors: Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
PDB entry 3voy: Crystal structure of human glutaminase in apo form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-02-23
Authors: Thangavelu, K., Sivaraman, J.
PDB entry 3voz: Crystal structure of human glutaminase in complex with BPTES
Classification: HYDROLASE/HYDROLASE INHIBTIOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-02-23
Authors: Thangavelu, K., Sivaraman, J.
PDB entry 3vp0: Crystal structure of human glutaminase in complex with L-glutamine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-02-23
Authors: Thangavelu, K., Sivaraman, J.
PDB entry 3vp1: Crystal structure of human glutaminase in complex with L-glutamate and BPTES
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-02-23
Authors: Thangavelu, K., Sivaraman, J.
PDB entry 3vp2: Crystal structure of human glutaminase in complex with inhibitor 2
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-02-23
Authors: Thangavelu, K., Sivaraman, J.
PDB entry 3vp3: Crystal structure of human glutaminase in complex with inhibitor 3
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-02-23
Authors: Thangavelu, K., Sivaraman, J.
PDB entry 3vp4: Crystal structure of human glutaminase in complex with inhibitor 4
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2012-02-23
Authors: Thangavelu, K., Sivaraman, J.
PDB entry 3vp5: X-ray Crystal Structure of Wild Type HrtR in the Holo Form
Classification: TRANSCRIPTION
Source organism: Lactococcus lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-02-23
Authors: Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
PDB entry 3vp6: Structural characterization of Glutamic Acid Decarboxylase; insights into the mechanism of autoinactivation
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-02-27
Authors: Langendorf, C.G., Tuck, K.L., Key, T.L.G., Rosado, C.J., Wong, A.S.M., Fenalti, G., Buckle, A.M., Law, R.H.P., Whisstock, J.C.
PDB entry 3vp7: Crystal structure of the beta-alpha repeated, autophagy-specific (BARA) domain of Vps30/Atg6
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-02-28
Authors: Noda, N.N., Kobayashi, T., Adachi, W., Fujioka, Y., Ohsumi, Y., Inagaki, F.
PDB entry 3vp8: Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2012-02-28
Authors: Matsumura, H., Kusaka, N., Nakamura, T., Tanaka, N., Sagegami, K., Uegaki, K., Inoue, T., Mukai, Y.
PDB entry 3vp9: Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.799 Å
Deposited: 2012-02-28
Authors: Matsumura, H., Kusaka, N., Nakamura, T., Tanaka, N., Sagegami, K., Uegaki, K., Inoue, T., Mukai, Y.
PDB entry 3vpa: Staphylococcus aureus FtsZ apo-form
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.487 Å
Deposited: 2012-02-28
Authors: Matsui, T., Yamane, J., Mogi, N., Yao, M., Tanaka, I.
PDB entry 3vpb: ArgX from Sulfolobus tokodaii complexed with LysW/Glu/ADP/Mg/Zn/Sulfate
Classification: LIGASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-02-29
Authors: Tomita, T., Ouchi, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3vpc: ArgX from Sulfolobus tokodaii complexed with ADP
Classification: LIGASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2012-02-29
Authors: Tomita, T., Horie, A., Kuzuyama, T., Nishiyama, M.
PDB entry 3vpd: LysX from Thermus thermophilus complexed with AMP-PNP
Classification: LIGASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2012-02-29
Authors: Tomita, T., Ouchi, T., Kuzuyama, T., Nishiyama, M.
PDB entry 3vpe: Crystal Structure of Metallo-beta-Lactamase SMB-1
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-02-29
Authors: Wachino, J., Yamaguchi, Y., Mori, S., Arakawa, Y., Shibayama, K.
PDB entry 3vpg: L-lactate dehydrogenase from Thermus caldophilus GK24
Classification: OXIDOREDUCTASE
Source organism: Thermus caldophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-03-01
Authors: Arai, K., Ohno, T., Miyanaga, A., Fushinobu, S., Taguchi, H.
PDB entry 3vph: L-lactate dehydrogenase from Thermus caldophilus GK24 complexed with oxamate, NADH and FBP
Classification: OXIDOREDUCTASE
Source organism: Thermus caldophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-03-01
Authors: Arai, K., Ohno, T., Miyanaga, A., Fushinobu, S., Taguchi, H.
PDB entry 3vpi: Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-03-04
Authors: Ding, J., Wang, W., Wang, D.C.
PDB entry 3vpj: crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa in complex with immune protein Tsi1
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-03-04
Authors: Ding, J., Wang, W., Wang, D.C.
PDB entry 3vpk: Crystal Structure of 6-Guanidinohexanoyl Trypsin
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2012-03-05
Authors: Masuda, Y., Nitanai, Y., Mizutani, R., Noguchi, S.
PDB entry 3vpl: Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase
Classification: HYDROLASE
Source organism: Vibrio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2012-03-05
Authors: Watanabe, N., Sakaguchi, K.
PDB entry 3vpm: Crystal structure of human ribonucleotide reductase subunit M2 (hRRM2) mutant
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-03-05
Authors: Chen, X., Xu, Z., Liu, H., Zhang, L., Chen, B., Zhu, L., Yang, C., Zhu, W., Shao, J.
PDB entry 3vpn: Crystal structure of human ribonucleotide reductase subunit M2 (hRRM2) mutant
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2012-03-05
Authors: Chen, X., Xu, Z., Liu, H., Zhang, L., Chen, B., Zhu, L., Yang, C., Zhu, W., Shao, J.
PDB entry 3vpo: Crystal structure of human ribonucleotide reductase subunit M2 (hRRM2) mutant
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-03-05
Authors: Chen, X., Xu, Z., Liu, H., Zhang, L., Chen, B., Zhu, L., Yang, C., Zhu, W., Shao, J.
PDB entry 3vpp: Crystal Structure of the Human CLEC9A C-type Lectin-Like Domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.642 Å
Deposited: 2012-03-07
Authors: Czabotar, P.E., Zhang, J.G., Policheni, A.N., Shortman, K., Lahoud, M.H., Colman, P.M.
PDB entry 3vpq: Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathione
Classification: TRANSFERASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.702 Å
Deposited: 2012-03-08
Authors: Yamamoto, K., Higashiura, A., Nakagawa, A., Suzuki, M.
PDB entry 3vpr: Crystal Structure of a TetR Family Transcriptional Regulator PfmR from Thermus thermophilus HB8
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2012-03-12
Authors: Agari, Y., Sakamoto, K., Kuramitsu, S., Shinkai, A.
PDB entry 3vps: Structure of a novel NAD dependent-NDP-hexosamine 5,6-dehydratase, TunA, involved in tunicamycin biosynthesis
Classification: TRANSFERASE
Source organism: Streptomyces chartreusis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-03-12
Authors: Wyszynski, F.J., Lee, S.S., Yabe, T., Wang, H., Gomez-Escribano, J.P., Bibb, M.J., Lee, S.J., Davies, G.J., Davis, B.G.
PDB entry 3vpt: Crystal structure of Bombyx mori sigma-class glutathione transferase in apo form
Classification: TRANSFERASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-03-13
Authors: Yamamoto, K., Higashiura, A., Suzuki, M., Nakagawa, A.
PDB entry 3vpv: Crystal Structure of Pseudomonas aeruginosa Tsi2
Classification: TOXIN INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-03-13
Authors: Wang, W., Ding, J., Wang, D.C.
PDB entry 3vpx: Crystal structure of leucine dehydrogenase from a psychrophilic bacterium Sporosarcina psychrophila.
Classification: OXIDOREDUCTASE
Source organism: Sporosarcina psychrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2012-03-14
Authors: Zhao, Y., Wakamatsu, T., Doi, K., Sakuraba, H., Ohshima, T.
PDB entry 3vpy: Crystal structure of Arabidopsis DDL FHA domain
Classification: PROTEIN BINDING
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-03-15
Authors: Yuan, Y.A., Machida, S.
PDB entry 3vpz: Crystal structure of glucokinase from Antarctic psychrotroph at 1.69A
Classification: TRANSFERASE
Source organism: Pseudoalteromonas
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2012-03-16
Authors: Oda, T., Fuchita, N., Motoshima, H., Kawamoto, M., Watanabe, K.
PDB entry 3vq1: Crystal structure of mouse TLR4/MD-2/lipid IVa complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-03-17
Authors: Ohto, U., Shimizu, T.
PDB entry 3vq2: Crystal structure of mouse TLR4/MD-2/LPS complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2012-03-17
Authors: Ohto, U., Shimizu, T.
PDB entry 3vq4: Fragments bound to HIV-1 integrase
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-03-20
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vq5: HIV-1 IN core domain in complex with N-METHYL-1-(4-METHYL-2-PHENYL-1,3-THIAZOL-5-YL)METHANAMINE
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-03-20
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vq6: HIV-1 IN core domain in complex with (1-methyl-5-phenyl-1H-pyrazol-4-yl)methanol
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-03-20
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vq7: HIV-1 IN core domain in complex with 4-(1H-pyrrol-1-yl)aniline
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2012-03-20
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vq8: HIV-1 IN core domain in complex with (3R)-3,4-dihydro-2H-chromen-3-ylmethanol
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-03-20
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vq9: HIV-1 IN core domain in complex with 6-fluoro-1,3-benzothiazol-2-amine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-03-20
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vqa: HIV-1 IN core domain in complex with 1-benzothiophen-6-amine 1,1-dioxide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-03-20
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vqb: HIV-1 IN core domain in complex with 6-fluoro-4H-1,3-benzodioxine-8-carboxylic acid
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-03-21
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vqc: HIV-1 IN core domain in complex with (5-METHYL-3-PHENYL-1,2-OXAZOL-4-YL)METHANOL
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-03-21
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vqd: HIV-1 IN core domain in complex with 5-methyl-3-phenyl-1,2-oxazole-4-carboxylic acid
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-03-21
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vqe: HIV-1 IN core domain in complex with [1-(4-fluorophenyl)-5-methyl-1H-pyrazol-4-yl]methanol
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-03-21
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vqf: Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.199 Å
Deposited: 2012-03-22
Authors: Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
PDB entry 3vqg: Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2012-03-23
Authors: Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
PDB entry 3vqh: Bromine SAD partially resolves multiple binding modes for PKA inhibitor H-89
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2012-03-23
Authors: Pflug, A., Johnson, K.A., Engh, R.A.
PDB entry 3vqi: Crystal structure of Kluyveromyces marxianus Atg5
Classification: PROTEIN TRANSPORT
Source organism: Kluyveromyces marxianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-03-24
Authors: Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.
PDB entry 3vqj: Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase
Classification: HYDROLASE
Source organism: Thiobacillus thioparus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2012-03-24
Authors: Katayama, Y., Noguchi, K., Ogawa, T., Ohtaki, A., Odaka, M., Yohda, M.
PDB entry 3vqk: Small heat shock protein hsp14.0 of wild type
Classification: CHAPERONE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2012-03-26
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 3vql: Small heat shock protein hsp14.0 of C-terminal deletion variant
Classification: CHAPERONE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-03-26
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 3vqm: Small heat shock protein hsp14.0 of C-terminal deletion variant with C-terminal peptide
Classification: CHAPERONE
Source organism: Sulfolobus tokodaii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2012-03-26
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 3vqp: HIV-1 IN core domain in complex with 2,3-dihydro-1,4-benzodioxin-5-ylmethanol
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-03-29
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vqq: HIV-1 integrase core domain in complex with 2,1,3-benzothiadiazol-4-amine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-03-29
Authors: Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.
PDB entry 3vqr: Structure of a dye-linked L-proline dehydrogenase mutant from the aerobic hyperthermophilic archaeon, Aeropyrum pernix
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2012-03-29
Authors: Sakuraba, H., Ohshima, T., Satomura, T., Yoneda, K.
PDB entry 3vqs: Crystal structure of HCV NS5B RNA polymerase with a novel piperazine inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Hepatitis C virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-03-30
Authors: Adachi, T., Doi, S., Ando, I., Sugimoto, K., Orita, T., Nomura, A., Kamada, M.
PDB entry 3vqt: Crystal structure analysis of the translation factor RF3
Classification: TRANSLATION
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-03-30
Authors: Kihira, K., Shomura, Y., Shibata, N., Kitamura, M., Higuchi, Y.
PDB entry 3vqu: CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH 4-[(4-amino-5-cyano-6-ethoxypyridin-2- yl)amino]benzamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-03-30
Authors: Kusakabe, K., Ide, N., Daigo, Y., Itoh, T., Higashino, K., Okano, Y., Tadano, G., Tachibana, Y., Sato, Y., Inoue, M., Wada, T., Iguchi, M., Kanazawa, T., Ishioka, Y., Dohi, K., Tagashira, S., Kido, Y., Sakamoto, S., Yasuo, K., Maeda, M., Yamamoto, T., Higaki, M., Endoh, T., Ueda, K., Shiota, T., Murai, H., Nakamura, Y.
PDB entry 3vqv: Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with AMPPNP (re-refined)
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-04-01
Authors: Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3vqw: Crystal structure of the SeMet substituted catalytic domain of pyrrolysyl-tRNA synthetase
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-04-01
Authors: Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3vqx: Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in triclinic crystal form
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-04-02
Authors: Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3vqy: Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with BocLys and AMPPNP (form 2)
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-04-02
Authors: Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3vqz: Crystal structure of metallo-beta-lactamase, SMB-1, in a complex with mercaptoacetic acid
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-04-02
Authors: Wachino, J., Yamaguchi, Y., Mori, S., Arakawa, Y., Shibayama, K.
PDB entry 3vr0: Crystal structure of Pyrococcus furiosus PbaB, an archaeal proteasome activator
Classification: PROTEIN BINDING
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-04-02
Authors: Kumoi, K., Satoh, T., Hiromoto, T., Mizushima, T., Kamiya, Y., Noda, M., Uchiyama, S., Murata, K., Yagi, H., Kato, K.
PDB entry 3vr1: Crystal structure analysis of the translation factor RF3
Classification: TRANSLATION
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2012-04-03
Authors: Kihira, K., Shomura, Y., Shibata, N., Kitamura, M., Higuchi, Y.
PDB entry 3vr2: Crystal structure of nucleotide-free A3B3 complex from Enterococcus hirae V-ATPase [eA3B3]
Classification: HYDROLASE
Source organism: Enterococcus hirae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-04-03
Authors: Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
PDB entry 3vr3: Crystal structure of AMP-PNP bound A3B3 complex from Enterococcus hirae V-ATPase [bA3B3]
Classification: HYDROLASE
Source organism: Enterococcus hirae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2012-04-03
Authors: Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
PDB entry 3vr4: Crystal structure of Enterococcus hirae V1-ATPase [eV1]
Classification: HYDROLASE
Source organism: Enterococcus hirae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.172 Å
Deposited: 2012-04-03
Authors: Saijo, S., Arai, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
PDB entry 3vr5: Crystal structure of nucleotide-free Enterococcus hirae V1-ATPase [eV1(L)]
Classification: HYDROLASE
Source organism: Enterococcus hirae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2012-04-03
Authors: Saijo, S., Arai, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
PDB entry 3vr6: Crystal structure of AMP-PNP bound Enterococcus hirae V1-ATPase [bV1]
Classification: HYDROLASE
Source organism: Enterococcus hirae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2012-04-03
Authors: Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
PDB entry 3vr8: Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum
Classification: OXIDOREDUCTASE
Source organism: Ascaris suum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2012-04-07
Authors: Shimizu, H., Shiba, T., Inaoka, D.K., Osanai, A., Kita, K., Sakamoto, K., Harada, S.
PDB entry 3vr9: Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum with the specific inhibitor flutolanil
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Ascaris suum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2012-04-07
Authors: Shimizu, H., Shiba, T., Inaoka, D.K., Osanai, A., Kita, K., Sakamoto, K., Harada, S.
PDB entry 3vra: Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum with the specific inhibitor Atpenin A5
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Ascaris suum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.44 Å
Deposited: 2012-04-07
Authors: Shimizu, H., Shiba, T., Inaoka, D.K., Osanai, A., Kita, K., Sakamoto, K., Harada, S.
PDB entry 3vrb: Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum with the specific inhibitor flutolanil and substrate fumarate
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Ascaris suum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2012-04-07
Authors: Shimizu, H., Shiba, T., Inaoka, D.K., Osanai, A., Kita, K., Sakamoto, K., Harada, S.
PDB entry 3vrc: Crystal structure of cytochrome c' from Thermochromatium tepidum
Classification: ELECTRON TRANSPORT
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2012-04-09
Authors: Hirano, Y., Kimura, Y., Suzuki, H., Miki, K., Wang, Z.-Y.
PDB entry 3vrd: Crystal structure of flavocytochrome c from Thermochromatium tepidum
Classification: ELECTRON TRANSPORT/OXIDOREDUCTASE
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-04-09
Authors: Hirano, Y., Kimura, Y., Suzuki, H., Miki, K., Wang, Z.-Y.
PDB entry 3vre: The crystal structure of hemoglobin from woolly mammoth in the deoxy form
Classification: OXYGEN TRANSPORT
Source organism: Mammuthus primigenius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2012-04-09
Authors: Noguchi, H., Campbell, K.L., Ho, C., Park, S.-Y., Tame, J.R.H.
PDB entry 3vrf: The crystal structure of hemoglobin from woolly mammoth in the carbonmonoxy forms
Classification: OXYGEN TRANSPORT
Source organism: Mammuthus primigenius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2012-04-09
Authors: Noguchi, H., Campbell, K.L., Ho, C., Park, S.-Y., Tame, J.R.H.
PDB entry 3vrg: The crystal structure of hemoglobin from woolly mammoth in the met form
Classification: OXYGEN TRANSPORT
Source organism: Mammuthus primigenius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-04-09
Authors: Noguchi, H., Campbell, K.L., Ho, C., Park, S.-Y., Tame, J.R.H.
PDB entry 3vrh: Crystal structure of ph0300
Classification: RNA BINDING PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-04-10
Authors: Nakagawa, H., Kuratani, M., Goto-Ito, S., Ito, T., Sekine, S.I., Yokoyama, S.
PDB entry 3vri: HLA-B*57:01-RVAQLENVYI in complex with abacavir
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-04-11
Authors: Vivian, J.P., Illing, P.T., McCluskey, J., Rossjohn, J.
PDB entry 3vrj: HLA-B*57:01-LTTKLTNTNI in complex with abacavir
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-04-11
Authors: Vivian, J.P., Illing, P.T., McCluskey, J., Rossjohn, J.
PDB entry 3vrk: Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase / Thiocyanate complex
Classification: HYDROLASE
Source organism: Thiobacillus thioparus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2012-04-11
Authors: Katayama, Y., Noguchi, K., Ogawa, T., Ohtaki, A., Odaka, M., Yohda, M.
PDB entry 3vrl: Crystal structure of BMJ4 p24 capsid protein in complex with A10F9 Fab
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2012-04-12
Authors: Gu, Y., Cao, F., Li, S., Yuan, Y.A., Xia, N.
PDB entry 3vrm: Structure of cytochrome P450 Vdh mutant T107A with bound vitamin D3
Classification: OXIDOREDUCTASE
Source organism: Pseudonocardia autotrophica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2012-04-12
Authors: Nishioka, T., Yasutake, Y., Tamura, T.
PDB entry 3vrn: Crystal structure of the tyrosine kinase binding domain of Cbl-c
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2012-04-13
Authors: Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
PDB entry 3vro: Crystal structure of the tyrosine kinase binding domain of Cbl-c in complex with phospho-Src peptide
Classification: PROTEIN BINDING/Transferase
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-04-13
Authors: Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
PDB entry 3vrp: Crystal structure of the tyrosine kinase binding domain of Cbl-c in complex with phospho-EGFR peptide
Classification: PROTEIN BINDING/Transferase
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2012-04-13
Authors: Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
PDB entry 3vrq: Crystal structure of the tyrosine kinase binding domain of Cbl-c (PL mutant)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2012-04-13
Authors: Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
PDB entry 3vrr: Crystal structure of the tyrosine kinase binding domain of Cbl-c (PL mutant) in complex with phospho-EGFR peptide
Classification: PROTEIN BINDING/TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-04-13
Authors: Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
PDB entry 3vrs: Crystal structure of fluoride riboswitch, soaked in Mn2+
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.603 Å
Deposited: 2012-04-13
Authors: Ren, A.M., Rajashankar, K.R., Patel, D.J.
PDB entry 3vrt: VDR ligand binding domain in complex with 2-Mehylidene-19,25,26,27-tetranor-1alpha,24-dihydroxyvitaminD3
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-04-14
Authors: Nakabayashi, M., Yoshimoto, N., Inaba, Y., Itoh, T., Ito, N., Yamamoto, K.
PDB entry 3vru: VDR ligand binding domain in complex with 2-Methylidene-19,24-dinor-1alpha,25-dihydroxy vitaminD3
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-04-14
Authors: Yoshimoto, N., Inaba, Y., Itoh, T., Nakabayashi, M., Ito, N., Yamamoto, K.
PDB entry 3vrv: VDR ligand binding domain in complex with 2-Methylidene-26,27-dimethyl-19,24-dinor-1alpha,25-dihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-04-14
Authors: Yoshimoto, N., Inaba, Y., Itoh, T., Nakabayashi, M., Ito, N., Yamamoto, K.
PDB entry 3vrw: VDR ligand binding domain in complex with 22S-Butyl-2-methylidene-26,27-dimethyl-19,24-dinor-1alpha,25-dihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-04-16
Authors: Yoshimoto, N., Inaba, Y., Itoh, T., Nakabayashi, M., Ito, N., Yamamoto, K.
PDB entry 3vry: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor 4-Amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl-cyclopentane
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.481 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Tomabechi, Y., Niwa, H., Handa, N., Yokoyama, S.
PDB entry 3vrz: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor 1-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]-3-benzylurea
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.218 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Tomabechi, Y., Handa, N., Yokoyama, S.
PDB entry 3vs0: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor N-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]benzamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.934 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Honda, K., Tomabechi, Y., Handa, N., Yokoyama, S.
PDB entry 3vs1: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor 1-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]-3-phenylurea
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.464 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Tomabechi, Y., Toyama, M., Handa, N., Yokoyama, S.
PDB entry 3vs2: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor 7-[cis-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.609 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Tomabechi, Y., Niwa, H., Parker, J.L., Handa, N., Yokoyama, S.
PDB entry 3vs3: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Tomaebchi, Y., Handa, N., Yokoyama, S.
PDB entry 3vs4: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor 5-(4-phenoxyphenyl)-7-(tetrahydro-2H-pyran-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.747 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Tomabechi, Y., Handa, N., Yokoyama, S.
PDB entry 3vs5: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor 7-(1-methylpiperidin-4-yl)-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.851 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Tomabechi, Y., Handa, N., Yokoyama, S.
PDB entry 3vs6: Crystal structure of HCK complexed with a pyrazolo-pyrimidine inhibitor tert-butyl {4-[4-amino-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]-2-methoxyphenyl}carbamate
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.373 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Honda, K., Tomabechi, Y., Toyama, M., Handa, N., Yokoyama, S.
PDB entry 3vs7: Crystal structure of HCK complexed with a pyrazolo-pyrimidine inhibitor 1-cyclopentyl-3-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.001 Å
Deposited: 2012-04-21
Authors: Kuratani, M., Honda, K., Niwa, H., Toyama, M., Handa, N., Yokoyama, S.
PDB entry 3vs8: Crystal structure of type III PKS ArsC
Classification: TRANSFERASE
Source organism: Azotobacter vinelandii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2012-04-23
Authors: Satou, R., Miyanaga, A., Ozawa, H., Funa, N., Miyazono, K., Tanokura, M., Ohnishi, Y., Horinouchi, S.
PDB entry 3vs9: Crystal structure of type III PKS ArsC mutant
Classification: TRANSFERASE
Source organism: Azotobacter vinelandii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2012-04-23
Authors: Satou, R., Miyanaga, A., Ozawa, H., Funa, N., Miyazono, K., Tanokura, M., Ohnishi, Y., Horinouchi, S.
PDB entry 3vsa: Crystal Structure of O-phosphoserine sulfhydrylase without acetate
Classification: TRANSFERASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2012-04-24
Authors: Nakamura, T., Kawai, Y., Kataoka, M., Ishikawa, K.
PDB entry 3vsb: SUBTILISIN CARLSBERG D-NAPHTHYL-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX
Classification: SERINE PROTEASE
Source organism: Bacillus licheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 1997-09-25
Authors: Stoll, V.S., Eger, B.T., Hynes, R.C., Martichonok, V., Jones, J.B., Pai, E.F.
PDB entry 3vsc: Crystal Structure of the K127A Mutant of O-Phosphoserine Sulfhydrylase Complexed with External Schiff Base of Pyridoxal 5'-Phosphate with O-Phospho-L-Serine
Classification: TRANSFERASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2012-04-24
Authors: Nakamura, T., Kawai, Y., Kataoka, M., Ishikawa, K.
PDB entry 3vsd: Crystal Structure of the K127A Mutant of O-Phosphoserine Sulfhydrylase Complexed with External Schiff Base of Pyridoxal 5'-Phosphate with O-Acetyl-L-Serine
Classification: TRANSFERASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2012-04-24
Authors: Nakamura, T., Kawai, Y., Kataoka, M., Ishikawa, K.
PDB entry 3vse: Crystal structure of methyltransferase
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2012-04-25
Authors: Kita, S., Tanaka, Y., Yao, M., Tanaka, I.
PDB entry 3vsf: Crystal structure of 1,3Gal43A, an exo-beta-1,3-Galactanase from Clostridium thermocellum
Classification: SUGAR BINDING PROTEIN
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.757 Å
Deposited: 2012-04-25
Authors: Jiang, D., Fan, J., Wang, X., Zhao, Y., Huang, B., Zhang, X.C.
PDB entry 3vsg: Crystal structure of iron free 1,6-APD, 2-Animophenol-1,6-Dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Comamonas testosteroni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-04-25
Authors: Li, D.F., Hou, Y.J., Hu, Y., Wang, D.C., Liu, W.
PDB entry 3vsh: Crystal structure of native 1,6-APD (with Iron), 2-Animophenol-1,6-Dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Comamonas testosteroni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-04-25
Authors: Li, D.F., Hou, Y.J., Hu, Y., Wang, D.C., Liu, W.
PDB entry 3vsi: Crystal structure of native 1,6-APD (2-Animophenol-1,6-dioxygenase) complex with 4-Nitrocatechol
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Comamonas testosteroni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-04-25
Authors: Li, D.F., Hou, Y.J., Hu, Y., Wang, D.C., Liu, W.
PDB entry 3vsj: Crystal structure of 1,6-APD (2-ANIMOPHENOL-1,6-DIOXYGENASE) complexed with intermediate products
Classification: OXIDOREDUCTASE
Source organism: Comamonas testosteroni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-04-25
Authors: Li, D.F., Hou, Y.J., Hu, Y., Wang, D.C., Liu, W.
PDB entry 3vsk: Crystal structure of penicillin-binding protein 3 (PBP3) from methicilin-resistant Staphylococcus aureus in the apo form.
Classification: PENICILLIN-BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2012-04-25
Authors: Yoshida, H., Tame, J.R., Park, S.Y.
PDB entry 3vsl: Crystal structure of penicillin-binding protein 3 (PBP3) from methicilin-resistant Staphylococcus aureus in the cefotaxime bound form.
Classification: PENICILLIN-BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-04-25
Authors: Yoshida, H., Tame, J.R., Park, S.Y.
PDB entry 3vsm: The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
Classification: LYASE ACTIVATOR
Source organism: Autographa californica nucleopolyhedrovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-04-27
Authors: Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.
PDB entry 3vsn: The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
Classification: LYASE ACTIVATOR
Source organism: Autographa californica nucleopolyhedrovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-04-27
Authors: Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.
PDB entry 3vso: Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt21
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-04-30
Authors: Oyama, T., Waku, T., Ohashi, M., Morikawa, K., Miyachi, H.
PDB entry 3vsp: Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt28
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-04-30
Authors: Oyama, T., Waku, T., Ohashi, M., Morikawa, K., Miyachi, H.
PDB entry 3vsq: Crystal Structure of the Cytoplasmic Domain of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 E236R Mutant in the presence of ethanol
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-05-02
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3vsr: Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-05-08
Authors: Tonozuka, T., Tamaki, A., Yokoi, G., Miyazaki, T., Ichikawa, M., Nishikawa, A., Ohta, Y., Hidaka, Y., Katayama, K., Hatada, Y., Ito, T., Fujita, K.
PDB entry 3vss: Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain complexed with fructose
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2012-05-08
Authors: Tonozuka, T., Tamaki, A., Yokoi, G., Miyazaki, T., Ichikawa, M., Nishikawa, A., Ohta, Y., Hidaka, Y., Katayama, K., Hatada, Y., Ito, T., Fujita, K.
PDB entry 3vst: The complex structure of XylC with Tris
Classification: HYDROLASE
Source organism: Thermoanaerobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2012-05-09
Authors: Huang, C.H., Sun, Y., Ko, T.P., Ma, Y., Chen, C.C., Zheng, Y., Chan, H.C., Pang, X., Wiegel, J., Shao, W., Guo, R.T.
PDB entry 3vsu: The complex structure of XylC with xylobiose
Classification: HYDROLASE
Source organism: Thermoanaerobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2012-05-09
Authors: Huang, C.H., Sun, Y., Ko, T.P., Ma, Y., Chen, C.C., Zheng, Y., Chan, H.C., Pang, X., Wiegel, J., Shao, W., Guo, R.T.
PDB entry 3vsv: The complex structure of XylC with xylose
Classification: HYDROLASE
Source organism: Thermoanaerobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2012-05-09
Authors: Huang, C.H., Sun, Y., Ko, T.P., Ma, Y., Chen, C.C., Zheng, Y., Chan, H.C., Pang, X., Wiegel, J., Shao, W., Guo, R.T.
PDB entry 3vsw: Human renin in complex with compound 8
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2012-05-11
Authors: Takahashi, M., Hanzawa, H.