LiteFold/PDB huggingface dataset:
PDB entry 2cx0: Crystal structure of a PUA domain (APE0525) from the Aeropyrum pernix K1 (sulfate complex)
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-06-27
Authors: Mizohata, E., Morita, S., Nagano, K., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cx1: Crystal structure of a PUA domain (APE0525) from the Aeropyrum pernix K1 (tartrate complex)
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-06-27
Authors: Mizohata, E., Morita, S., Nagano, K., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cx3: Crystal structure of a bacterioferritin comigratory protein peroxiredoxin from the Aeropyrum pernix K1 (form-1 crystal)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2005-06-27
Authors: Mizohata, E., Murayama, K., Idaka, M., Tatsuguchi, A., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cx4: Crystal structure of a bacterioferritin comigratory protein peroxiredoxin from the Aeropyrum pernix K1 (form-2 crystal)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-06-27
Authors: Mizohata, E., Murayama, K., Idaka, M., Tatsuguchi, A., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cx5: Crystal structure of a putative trans-editing enzyme for prolyl tRNA synthetase
Classification: TRANSLATION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-06-28
Authors: Murayama, K., Nakagawa, N., Ebihara, A., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cx6: Crystal structure of ribonuclease inhibitor Barstar
Classification: HYDROLASE INHIBITOR
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2005-06-28
Authors: Murayama, K., Kawazoe, M., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cx7: Crystal structure of sterol carrier protein 2
Classification: LIPID TRANSPORT
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2005-06-28
Authors: Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cx8: Crystal structure of methyltransferase with ligand(SAH)
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2005-06-28
Authors: Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cx9: Crystal structure of acyl-CoA dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-06-28
Authors: Murayama, K., Kinebuchi, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxa: Crystal structure of Leucyl/phenylalanyl-tRNA protein transferase from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-06-28
Authors: Kato-Murayama, M., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxb: CRYSTALLIZATION AND X-RAY STRUCTURE DETERMINATION OF CYTOCHROME C2 FROM RHODOBACTER SPHAEROIDES IN THREE CRYSTAL FORMS
Classification: ELECTRON TRANSPORT (CYTOCHROME)
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 1994-04-21
Authors: Axelrod, H.L., Feher, G., Allen, J.P., Chirino, A.J., Day, M.W., Hsu, B.T., Rees, D.C.
PDB entry 2cxc: Crystal structure of archaeal transcription termination factor NusA
Classification: TRANSCRIPTION
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-06-28
Authors: Shibata, R., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxd: Crystal structure of conserved hypothetical protein, TTHA0068 from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-06-28
Authors: Kishishita, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxe: Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal)
Classification: LYASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2005-06-28
Authors: Mizohata, E., Mishima, C., Akasaka, R., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxf: RUN domain of Rap2 interacting protein x, crystallized in C2 space group
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2005-06-29
Authors: Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxg: CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED TO THE INHIBITOR ACARBOSE
Classification: GLYCOSYLTRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1998-05-08
Authors: Strokopytov, B.V., Uitdehaag, J.C.M., Ruiterkamp, R., Dijkstra, B.W.
PDB entry 2cxh: Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Classification: RNA BINDING PROTEIN
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-06-29
Authors: Kawazoe, M., Takemoto, C., Hanawa-Suetsugu, K., Kaminishi, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxi: Crystal Structure Of An N-terminal Fragment Of The Phenylalanyl-tRNA Synthetase Beta-Subunit From Pyrococcus Horikoshii
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2005-06-29
Authors: Sasaki, H., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxj: 3D Solution Structure of S100A13
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2005-06-30
Authors: Vaithiyalingam, S., Kumar, T.K.S., Yu, C.
PDB entry 2cxk: Crystal structure of the TIG domain of human calmodulin-binding transcription activator 1 (CAMTA1)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-06-30
Authors: Pioszak, A.A., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxl: RUN domain of Rap2 interacting protein x, crystallized in I422 space group
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2005-06-30
Authors: Kukimoto-Niino, M., Umehara, T., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxn: Crystal structure of mouse AMF / phosphate complex
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2005-06-30
Authors: Tanaka, N., Haga, A., Naba, N., Shiraiwa, K., Kusakabe, Y., Hashimoto, K., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
PDB entry 2cxo: Crystal structure of mouse AMF / E4P complex
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-06-30
Authors: Tanaka, N., Haga, A., Naba, N., Shiraiwa, K., Kusakabe, Y., Hashimoto, K., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
PDB entry 2cxp: Crystal structure of mouse AMF / A5P complex
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-06-30
Authors: Tanaka, N., Haga, A., Naba, N., Shiraiwa, K., Kusakabe, Y., Hashimoto, K., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
PDB entry 2cxq: Crystal structure of mouse AMF / S6P complex
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-06-30
Authors: Tanaka, N., Haga, A., Naba, N., Shiraiwa, K., Kusakabe, Y., Hashimoto, K., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
PDB entry 2cxr: Crystal structure of mouse AMF / 6PG complex
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-06-30
Authors: Tanaka, N., Haga, A., Naba, N., Shiraiwa, K., Kusakabe, Y., Hashimoto, K., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
PDB entry 2cxs: Crystal structure of mouse AMF / F6P complex
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-06-30
Authors: Tanaka, N., Haga, A., Naba, N., Shiraiwa, K., Kusakabe, Y., Hashimoto, K., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
PDB entry 2cxt: Crystal structure of mouse AMF / F6P complex
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-06-30
Authors: Tanaka, N., Haga, A., Naba, N., Shiraiwa, K., Kusakabe, Y., Hashimoto, K., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
PDB entry 2cxu: Crystal structure of mouse AMF / M6P complex
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-06-30
Authors: Tanaka, N., Haga, A., Naba, N., Shiraiwa, K., Kusakabe, Y., Hashimoto, K., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
PDB entry 2cxv: Dual Modes of Modification of Hepatitis A Virus 3C Protease by a Serine-Derived betaLactone: Selective Crystallization and High-resolution Structure of the His-102 Adduct
Classification: HYDROLASE
Source organism: Human hepatitis A virus Hu/Northern Africa/MBB/1978
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2005-07-01
Authors: Yin, J., Bergmann, E.M., Cherney, M.M., Lall, M.S., Jain, R.P., Vederas, J.C., James, M.N.G.
PDB entry 2cxx: Crystal structure of a probable GTP-binding protein engB
Classification: CELL CYCLE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-07-01
Authors: Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cxy: Crystal structure of the hBAF250b AT-rich interaction domain (ARID)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-07-01
Authors: Shimada, A., Niwa, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cy0: Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-07-01
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cy1: Crystal structure of APE1850
Classification: TRANSCRIPTION
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-07-04
Authors: Shibata, R., Bessho, Y., Umehara, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cy2: Crystal structure of TTHA1209 in complex with acetyl coenzyme A
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-07-04
Authors: Kaminishi, T., Takemoto, C., Uchikubo-Kamo, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cy3: CRYSTAL STRUCTURE OF CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS NORWAY AT 1.7 ANGSTROMS RESOLUTION
Classification: ELECTRON TRANSPORT (HEME PROTEIN)
Source organism: Desulfomicrobium norvegicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 1994-07-01
Authors: Czjzek, M., Payan, F., Haser, R.
PDB entry 2cy4: Crystal structure of phosphotyrosine binding (PTB) domain of epidermal growth factor receptor pathway substrate-8 (EPS8) related protein 1 from Mus musculus (form-1 crystal)
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2005-07-04
Authors: Mizohata, E., Hamana, H., Morita, S., Kinoshita, Y., Nagano, K., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cy5: Crystal structure of phosphotyrosine binding (PTB) domain of epidermal growth factor receptor pathway substrate-8 (EPS8) related protein 1 from Mus musculus (form-2 crystal)
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-07-04
Authors: Mizohata, E., Hamana, H., Morita, S., Kinoshita, Y., Nagano, K., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cy6: Crystal structure of ConM in complex with trehalose and maltose
Classification: METAL BINDING PROTEIN
Source organism: Canavalia maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-07-05
Authors: Cavada, B.S., Azevedo Jr., W.F., Delatorre, P., Rocha, B.A.M., Souza, E.P., Gadelha, C.A.A.
PDB entry 2cy7: The crystal structure of human Atg4B
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-07-05
Authors: Sugawara, K., Suzuki, N.N., Fujioka, Y., Mizushima, N., Ohsumi, Y., Inagaki, F.
PDB entry 2cy8: Crystal structure of D-phenylglycine aminotransferase (D-PhgAT) from Pseudomonas strutzeri ST-201
Classification: TRANSFERASE
Source organism: Pseudomonas stutzeri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-07-05
Authors: Kongsaeree, P., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cy9: Crystal structure of thioesterase superfamily member2 from Mus musculus
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2005-07-06
Authors: Hosaka, T., Murayama, K., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cya: Crystal structure of tyrosyl-tRNA synthetase from Aeropyrum pernix
Classification: LIGASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-07-06
Authors: Kuratani, M., Sakai, H., Takahashi, M., Yanagisawa, T., Kobayashi, T., Murayama, K., Chen, L., Liu, Z.J., Wang, B.C., Kuroishi, C., Kuramitsu, S., Terada, T., Bessho, Y., Shirouzu, M., Sekine, S.I., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cyb: Crystal structure of Tyrosyl-tRNA Synthetase complexed with L-tyrosine from Archaeoglobus fulgidus
Classification: LIGASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-07-06
Authors: Kuratani, M., Sakai, H., Takahashi, M., Yanagisawa, T., Kobayashi, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cyc: Crystal structure of Tyrosyl-tRNA Synthetase complexed with L-tyrosine from Pyrococcus horikoshii
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-07-06
Authors: Kuratani, M., Sakai, H., Takahashi, M., Yanagisawa, T., Kobayashi, T., Sakamoto, K., Terada, T., Shirouzu, M., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cyd: Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae
Classification: HYDROLASE
Source organism: Enterococcus hirae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-07-06
Authors: Murata, T., Yamato, I., Kakinuma, Y., Shirouzu, M., Walker, J.E., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cye: Crystal structure of Thioesterase complexed with coenzyme A and Zn from Thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-07-06
Authors: Hosaka, T., Kato-Murayama, M., Murayama, K., Kishishita, S., Handa, N., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cyf: The Crystal Structure of Canavalia Maritima Lectin (ConM) in Complex with Trehalose and Maltose
Classification: METAL BINDING PROTEIN
Source organism: Canavalia maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-07-06
Authors: Delatorre, P., Rocha, B.A.M., Sousa, E.P., Gadelha, C.A.A., Azevedo Jr., W.F., Cavada, B.S.
PDB entry 2cyg: Crystal structure at 1.45- resolution of the major allergen endo-beta-1,3-glucanase of banana as a molecular basis for the latex-fruit syndrome
Classification: HYDROLASE
Source organism: Musa acuminata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2005-07-07
Authors: Receveur-Brechot, V., Czjzek, M., Barre, A., Roussel, A., Peumans, W.J., Van Damme, E.J.M., Rouge, P.
PDB entry 2cyh: CYCLOPHILIN A COMPLEXED WITH DIPEPTIDE ALA-PRO
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 1996-02-27
Authors: Zhao, Y., Ke, H.
PDB entry 2cyj: Crystal structure of conserved hypothetical protein PH1505 from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-07-07
Authors: Ito, K., Arai, R., Kamo-Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cyk: ASPECTS OF RECEPTOR BINDING AND SIGNALLING OF INTERLEUKIN-4 INVESTIGATED BY SITE-DIRECTED MUTAGENESIS AND NMR SPECTROSCOPY
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 1994-08-16
Authors: Mueller, T., Sebald, W., Oschkinat, H.
PDB entry 2cym: EFFECTS OF AMINO ACID SUBSTITUTION ON THREE-DIMENSIONAL STRUCTURE: AN X-RAY ANALYSIS OF CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH AT 2 ANGSTROMS RESOLUTION
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1993-09-29
Authors: Morimoto, Y., Tani, T., Okumura, H., Higuchi, Y., Yasuoka, N.
PDB entry 2cyp: Crystal structure of yeast cytochrome C peroxidase refined at 1.7-angstroms resolution
Classification: OXIDOREDUCTASE (H2O2(A))
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 1985-08-27
Authors: Finzel, B.C., Poulos, T.L., Kraut, J.
PDB entry 2cyu: NMR structure of a downhill folding protein
Classification: TRANSFERASE
Experimental method: SOLUTION NMR
Deposited: 2005-07-08
Authors: Munoz, V., Sadqi, M.
PDB entry 2cyx: Structure of human ubiquitin-conjugating enzyme E2 G2 (UBE2G2/UBC7)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2005-07-08
Authors: Yoshikawa, S., Arai, R., Murayama, K., Imai, Y., Takahashi, R., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cyy: Crystal structure of PH1519 from Pyrococcus horikosii OT3
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-07-08
Authors: Okazaki, N., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cyz: photo-activation state of Fe-type NHase in anaerobic condition
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2005-07-09
Authors: Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz0: photo-activation state of Fe-type NHase in aerobic condition
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-07-09
Authors: Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz1: photo-activation state of Fe-type NHase with n-BA in anaerobic condition
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2005-07-09
Authors: Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz2: Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-1 crystal)
Classification: Isomerase, TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2005-07-10
Authors: Mizohata, E., Morita, S., Kinoshita, Y., Nagano, K., Uda, H., Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz3: Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-2 crystal)
Classification: Isomerase, TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-07-10
Authors: Mizohata, E., Morita, S., Kinoshita, Y., Nagano, K., Uda, H., Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz4: Crystal structure of a putative PII-like signaling protein (TTHA0516) from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2005-07-10
Authors: Arai, R., Fusatomi, E., Kukimoto-Niino, M., Kawaguchi, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz5: Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3
Classification: LYASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-07-11
Authors: Arai, R., Ito, K., Kamo-Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz6: Complex of Inactive Fe-type NHase with Cyclohexyl isocyanide
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-07-11
Authors: Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz7: Fe-type NHase photo-activated for 75min at 105K
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-07-11
Authors: Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz8: Crystal Structure of tt0972 protein from Thermus thermophilus
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-07-11
Authors: Kumei, M., Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cz9: Crystal Structure of galactokinase from Pyrococcus horikoshi
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-07-12
Authors: Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czc: Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Pyrococcus horikoshii OT3
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-07-13
Authors: Ito, K., Arai, R., Kamo-Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czd: Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 at 1.6 A resolution
Classification: LYASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-07-13
Authors: Arai, R., Ito, K., Kamo-Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2cze: Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 complexed with UMP
Classification: LYASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-07-13
Authors: Arai, R., Ito, K., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czf: Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 complexed with XMP
Classification: LYASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-07-13
Authors: Ito, K., Arai, R., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czg: Crystal structure of Probable phosphoribosylglycinamide formyl transferase (PH0318) from Pyrococcus horikoshii OT3
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2005-07-13
Authors: Yoshikawa, S., Arai, R., Kamo-Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czh: Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) with phosphate ion (orthorhombic form)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2005-07-13
Authors: Ito, K., Arai, R., Kamo-Uchikubo, T., Ohnishi, T., Ohba, H., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czi: Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) with calcium and phosphate ions
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2005-07-13
Authors: Arai, R., Ito, K., Ohnishi, T., Ohba, H., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czj: Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8
Classification: RNA BINDING PROTEIN/RNA
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2005-07-13
Authors: Bessho, Y., Shibata, R., Sekine, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czk: Crystal structure of human myo-inositol monophosphatase 2 (IMPA2) (trigonal form)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2005-07-13
Authors: Arai, R., Ito, K., Hanawa-Suetsugu, K., Ohnishi, T., Ohba, H., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czl: Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8 (Cys11 modified with beta-mercaptoethanol)
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2005-07-13
Authors: Arai, R., Nishino, A., Nagano, K., Kamo-Uchikubo, T., Nishimoto, M., Toyama, M., Terada, T., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czn: Solution structure of the chitin-binding domain of hyperthermophilic chitinase from pyrococcus furiosus
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: SOLUTION NMR
Deposited: 2005-07-13
Authors: Uegaki, T., Ikegami, T., Nakamura, T., Hagihara, Y., Mine, S., Inoue, T., Matsumura, H., Ataka, M., Ishikawa, K.
PDB entry 2czo: Solution Structure of the PX Domain of Bem1p
Classification: SIGNALING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: SOLUTION NMR
Deposited: 2005-07-14
Authors: Maeda, A., Ogura, K., Horiuchi, M., Kumeta, H., Fujioka, Y., Inagaki, F.
PDB entry 2czp: Structural analysis of membrane-bound mastoparan-X by solid-state NMR
Classification: TOXIN
Source organism: Vespa simillima xanthoptera
Experimental method: SOLID-STATE NMR
Deposited: 2005-07-14
Authors: Todokoro, Y., Fujiwara, T., Yumen, I., Fukushima, K., Kang, S.-W., Park, J.-S., Kohno, T., Wakamatsu, K., Akutsu, H.
PDB entry 2czq: A novel cutinase-like protein from Cryptococcus sp.
Classification: HYDROLASE
Source organism: Cryptococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2005-07-14
Authors: Masaki, K., Kamini, N.R., Ikeda, H., Iefuji, H., Kondo, H., Suzuki, M., Tsuda, S.
PDB entry 2czr: Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
Classification: TRANSCRIPTION REGULATOR
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-07-15
Authors: Yamamoto, T., Matsuda, T., Inoue, T., Matsumura, H., Morikawa, M., Kanaya, S., Kai, Y.
PDB entry 2czs: Crystal Structure Analysis of the Diheme c-type Cytochrome DHC2
Classification: ELECTRON TRANSPORT
Source organism: Geobacter sulfurreducens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-07-15
Authors: Heitmann, D., Einsle, O.
PDB entry 2czt: lipocalin-type prostaglandin D synthase
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-07-17
Authors: Kumasaka, T., Irikura, D., Ago, H., Aritake, K., Yamamoto, M., Inoue, T., Miyano, M., Urade, Y., Hayaishi, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czu: lipocalin-type prostaglandin D synthase
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-07-17
Authors: Kumasaka, T., Irikura, D., Ago, H., Aritake, K., Yamamoto, M., Inoue, T., Miyano, M., Urade, Y., Hayaishi, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2czv: Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-07-19
Authors: Kawano, S., Kakuta, Y., Nakashima, T., Tanaka, I., Kimura, M.
PDB entry 2czw: Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P
Classification: RIBOSOME, HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-07-19
Authors: Fukuhara, H., Kifusa, M., Watanabe, M., Terada, A., Honda, T., Numata, T., Kakuta, Y., Kimura, M.
PDB entry 2czy: Solution structure of the NRSF/REST-mSin3B PAH1 complex
Classification: GENE REGULATION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2005-07-20
Authors: Nomura, M., Uda-Tochio, H., Murai, K., Mori, N., Nishimura, Y.
PDB entry 2d00: Subunit F of V-type ATPase/synthase
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-07-21
Authors: Makyio, H., Iino, R., Ikeda, C., Imamura, H., Tamakoshi, M., Iwata, M., Stock, D., Bernal, R.A., Carpenter, E.P., Yoshida, M., Yokoyama, K., Iwata, S.
PDB entry 2d01: Wild Type Photoactive Yellow Protein, P65 Form
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2005-07-21
Authors: Shimizu, N., Kamikubo, H., Yamazaki, Y., Imamoto, Y., Kataoka, M.
PDB entry 2d02: R52Q Mutant of Photoactive Yellow Protein, P65 Form
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2005-07-21
Authors: Shimizu, N., Kamikubo, H., Yamazaki, Y., Imamoto, Y., Kataoka, M.
PDB entry 2d03: Crystal structure of the G91S mutant of the NNA7 Fab
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2005-07-23
Authors: Xie, K., Song, S.C., Spitalnik, S.L., Wedekind, J.E.
PDB entry 2d04: Crystal structure of neoculin, a sweet protein with taste-modifying activity.
Classification: PLANT PROTEIN
Source organism: Curculigo latifolia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2005-07-25
Authors: Shimizu-Ibuka, A., Morita, Y., Terada, T., Asakura, T., Nakajima, K., Iwata, S., Misaka, T., Sorimachi, H., Arai, S., Abe, K.
PDB entry 2d05: Chitosanase From Bacillus circulans mutant K218P
Classification: HYDROLASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-07-25
Authors: Fukamizo, T., Amano, S., Yamaguchi, K., Yoshikawa, T., Katsumi, T., Saito, J., Suzuki, M., Miki, K., Nagata, Y., Ando, A.
PDB entry 2d06: Human Sult1A1 Complexed With Pap and estradiol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-07-25
Authors: Gamage, N.U., Tsvetanov, S., Duggleby, R.G., McManus, M.E., Martin, J.L.
PDB entry 2d07: Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-07-26
Authors: Baba, D., Maita, N., Jee, J.G., Uchimura, Y., Saitoh, H., Sugasawa, K., Hanaoka, F., Tochio, H., Hiroaki, H., Shirakawa, M.
PDB entry 2d09: A Role for Active Site Water Molecules and Hydroxyl Groups of Substrate for Oxygen Activation in Cytochrome P450 158A2
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-07-30
Authors: Zhao, B., Waterman, M.R.
PDB entry 2d0a: Crystal structure of Bst-RNase HIII
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-07-31
Authors: Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2d0b: Crystal structure of Bst-RNase HIII in complex with Mg2+
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-07-31
Authors: Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2d0c: Crystal structure of Bst-RNase HIII in complex with Mn2+
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2005-07-31
Authors: Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2d0d: Crystal Structure of a Meta-cleavage Product Hydrolase (CumD) A129V Mutant
Classification: HYDROLASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-08-01
Authors: Jun, S.Y., Fushinobu, S., Nojiri, H., Omori, T., Shoun, H., Wakagi, T.
PDB entry 2d0e: Substrate assited in Oxygen Activation in Cytochrome P450 158A2
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2005-08-02
Authors: Zhao, B., Waterman, M.R.
PDB entry 2d0f: Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N complexed with P2, a pullulan model oligosaccharide
Classification: HYDROLASE
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2005-08-02
Authors: Abe, A., Yoshida, H., Tonozuka, T., Sakano, Y., Kamitori, S.
PDB entry 2d0g: Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide
Classification: HYDROLASE
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2005-08-02
Authors: Abe, A., Yoshida, H., Tonozuka, T., Sakano, Y., Kamitori, S.
PDB entry 2d0h: Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide
Classification: HYDROLASE
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-08-02
Authors: Abe, A., Yoshida, H., Tonozuka, T., Sakano, Y., Kamitori, S.
PDB entry 2d0i: Crystal Structure PH0520 protein from Pyrococcus horikoshii OT3
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2005-08-02
Authors: Lokanath, N.K., Terao, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d0j: Crystal Structure of Human GlcAT-S Apo Form
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-08-03
Authors: Shiba, T., Kakuda, S., Ishiguro, M., Oka, S., Kawasaki, T., Wakatsuki, S., Kato, R.
PDB entry 2d0k: Methionine-free mutant of Escherichia coli dihydrofolate reductase
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-08-04
Authors: Katayanagi, K.
PDB entry 2d0n: Crystal structure of the C-terminal SH3 domain of the adaptor protein GADS in complex with SLP-76 motif peptide reveals a unique SH3-SH3 interaction
Classification: SIGNALING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2005-08-04
Authors: Dimasi, N.
PDB entry 2d0o: Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+
Classification: CHAPERONE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-08-05
Authors: Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.
PDB entry 2d0p: Structure of diol dehydratase-reactivating factor in nucleotide free form
Classification: CHAPERONE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2005-08-05
Authors: Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.
PDB entry 2d0q: Complex of Fe-type NHase with Cyclohexyl isocyanide, photo-activated for 1hr at 277K
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-08-05
Authors: Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d0s: Crystal structure of the Cytochrome C552 from moderate thermophilic bacterium, hydrogenophilus thermoluteolus
Classification: ELECTRON TRANSPORT
Source organism: Hydrogenophilus thermoluteolus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-08-08
Authors: Nakamura, S., Ichiki, S.I., Takashima, H., Uchiyama, S., Hasegawa, J., Kobayashi, Y., Sambongi, Y., Ohkubo, T.
PDB entry 2d0t: Crystal structure of 4-phenylimidazole bound form of human indoleamine 2,3-dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-08-08
Authors: Sugimoto, H., Oda, S., Otsuki, T., Hino, T., Yoshida, T., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d0u: Crystal structure of cyanide bound form of human indoleamine 2,3-dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2005-08-08
Authors: Sugimoto, H., Oda, S., Otsuki, T., Hino, T., Yoshida, T., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d0v: Crystal structure of methanol dehydrogenase from Hyphomicrobium denitrificans
Classification: OXIDOREDUCTASE
Source organism: Hyphomicrobium denitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2005-08-09
Authors: Nojiri, M., Hira, D., Yamaguchi, K., Suzuki, S.
PDB entry 2d0w: Crystal structure of cytochrome cL from Hyphomicrobium denitrificans
Classification: ELECTRON TRANSPORT
Source organism: Hyphomicrobium denitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2005-08-10
Authors: Nojiri, M., Hira, D., Yamaguchi, K., Suzuki, S.
PDB entry 2d10: Crystal structure of the Radixin FERM domain complexed with the NHERF-1 C-terminal tail peptide
Classification: CELL ADHESION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-08-11
Authors: Terawaki, S., Maesaki, R., Hakoshima, T.
PDB entry 2d11: Crystal structure of the Radixin FERM domain complexed with the NHERF-2 C-terminal tail peptide
Classification: CELL ADHESION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2005-08-11
Authors: Terawaki, S., Maesaki, R., Hakoshima, T.
PDB entry 2d13: Crystal Structure of PH1257 from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-08-12
Authors: Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d16: Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-08-14
Authors: Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d17: Solution RNA structure of stem-bulge-stem region of the HIV-1 dimerization initiation site
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-08-15
Authors: Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
PDB entry 2d18: Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the extended-duplex dimer
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-08-15
Authors: Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
PDB entry 2d19: Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the kissing-loop dimer
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-08-15
Authors: Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
PDB entry 2d1a: Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-08-15
Authors: Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
PDB entry 2d1b: Solution RNA structure model of the HIV-1 dimerization initiation site in the kissing-loop dimer
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-08-15
Authors: Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
PDB entry 2d1c: Crystal Structure Of TT0538 protein from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-08-15
Authors: Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d1e: Crystal structure of PcyA-biliverdin complex
Classification: OXIDOREDUCTASE
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2005-08-17
Authors: Hagiwara, Y., Sugishima, M., Takahashi, Y., Fukuyama, K.
PDB entry 2d1f: Structure of Mycobacterium tuberculosis threonine synthase
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-08-20
Authors: Covarrubias, A.S., Bergfors, T., Mannerstedt, K., Oscarson, S., Jones, T.A., Mowbray, S.L., Hogbom, M.
PDB entry 2d1g: Structure of Francisella tularensis Acid Phosphatase A (AcpA) bound to orthovanadate
Classification: HYDROLASE
Source organism: Francisella tularensis subsp. novicida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2005-08-20
Authors: Felts, R.L., Reilly, T.J., Tanner, J.J.
PDB entry 2d1h: Crystal structure of ST1889 protein from thermoacidophilic archaeon Sulfolobus tokodaii
Classification: TRANSCRIPTION
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2005-08-22
Authors: Shinkai, A., Sekine, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2d1i: Structure of human Atg4b
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-08-24
Authors: Kumanomidou, T., Mizushima, T., Komatsu, M., Suzuki, A., Tanida, I., Sou, Y.S., Ueno, T., Kominami, E., Tanaka, K., Yamane, T.
PDB entry 2d1j: Factor Xa in complex with the inhibitor 2-[[4-[(5-chloroindol-2-yl)sulfonyl]piperazin-1-yl] carbonyl]thieno[3,2-b]pyridine n-oxide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-08-24
Authors: Suzuki, M.
PDB entry 2d1k: Ternary complex of the WH2 domain of mim with actin-dnase I
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-08-26
Authors: Chereau, D., Kerff, F., Dominguez, R.
PDB entry 2d1l: Structure of F-actin binding domain IMD of MIM (Missing In Metastasis)
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2005-08-27
Authors: Lee, S.H., Kerff, F., Chereau, D., Ferron, F., Dominguez, R.
PDB entry 2d1n: Collagenase-3 (MMP-13) complexed to a hydroxamic acid inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2005-08-29
Authors: Kohno, T., Hochigai, H., Yamashita, E., Tsukihara, T., Kanaoka, M.
PDB entry 2d1o: Stromelysin-1 (MMP-3) complexed to a hydroxamic acid inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2005-08-30
Authors: Kohno, T., Hochigai, H., Yamashita, E., Tsukihara, T., Kanaoka, M.
PDB entry 2d1p: crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Classification: TRANSLATION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2005-08-30
Authors: Numata, T., Fukai, S., Ikeuchi, Y., Suzuki, T., Nureki, O.