LiteFold/PDB huggingface dataset:
PDB entry 8yef: HPV6 L1 pentamer in complex with Fab F5-77
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Alphapapillomavirus 10; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-02-22
Authors: Wang, X., Fu, W.
PDB entry 8yeg: HPV11 L1 pentamer in complex with Fab F5-187
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; human papillomavirus 11
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-02-22
Authors: Wang, X., Fu, W.
PDB entry 8yeh: HPV16 L1 pentamer in complex with Fab F5-196
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human papillomavirus type 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-02-22
Authors: Wang, X., Fu, W.
PDB entry 8yei: HPV18 L1 pentamer in complex with Fab F5-203
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; human papillomavirus 18
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-02-22
Authors: Wang, X., Fu, W.
PDB entry 8yej: Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
Classification: MEMBRANE PROTEIN
Source organism: Guillardia theta CCMP2712
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-02-22
Authors: Tanaka, T., Iida, W., Sano, F.K., Oda, K., Shihoya, W., Nureki, O.
PDB entry 8yek: Cryo-EM structure of the channelrhodopsin GtCCR2
Classification: MEMBRANE PROTEIN
Source organism: Guillardia theta CCMP2712
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-02-22
Authors: Tanaka, T., Iida, W., Sano, F.K., Oda, K., Shihoya, W., Nureki, O.
PDB entry 8yel: Cryo-EM structure of the channelrhodopsin GtCCR4
Classification: MEMBRANE PROTEIN
Source organism: Guillardia theta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-02-22
Authors: Tanaka, T., Iida, W., Sano, F.K., Oda, K., Shihoya, W., Nureki, O.
PDB entry 8yem: Tubulin-RB3_SLD-TTL in complex with compound 9
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2024-02-22
Authors: Wu, C.Y., Wang, Y.X.
PDB entry 8yen: Aldehyde dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-02-22
Authors: Kim, S.B., Park, H.H.
PDB entry 8yeo: Type I-FHNH Cascade-dsDNA R-loop complex
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Selenomonas sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2024-02-22
Authors: Li, Z.
PDB entry 8yep: Crystal structure of adenosylcobinamide kinase / adenosylcobinamide phosphate guanylyltransferase from Methylocapsa palsarum
Classification: TRANSFERASE
Source organism: Methylocapsa palsarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-23
Authors: Nam, Y., Do, H.
PDB entry 8yeq: Crystal structure of L7/L12 Ribosomal Protein from Mycobacterium tuberculosis
Classification: RIBOSOMAL PROTEIN
Source organism: Mycobacterium tuberculosis CDC1551
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-23
Authors: Panicker, L., Tripathi, P.
PDB entry 8yer: Tubulin-RB3_SLD-TTL in complex with compound 4
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2024-02-23
Authors: Wu, C.Y., Wang, Y.X.
PDB entry 8yes: Crystal structure of adenosylcobinamide kinase / adenosylcobinamide phosphate guanylyltransferase complexed with adenosylcobinamide-phosphate
Classification: TRANSFERASE
Source organism: Methylocapsa palsarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-02-23
Authors: Nam, Y., Do, H.
PDB entry 8yet: Cryo EM structure of human phosphate channel XPR1 in complex with IP6
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2024-02-23
Authors: Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.
PDB entry 8yeu: Tubulin-RB3_SLD-TTL in complex with compound 2NH2
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2024-02-23
Authors: Wu, C.Y., Wang, Y.X.
PDB entry 8yev: Dual-specificity tyrosine phosphorylation-regulated kinase 1A in complex with coumestrol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25152 Å
Deposited: 2024-02-23
Authors: Lee, C.C., Hsu, K.C.
PDB entry 8yew: TRIP4 ASCH domain in unliganded form
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-23
Authors: Ding, J., Yang, H., Hu, C.
PDB entry 8yex: Cryo EM structure of human phosphate channel XPR1 at apo state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-02-23
Authors: Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.
PDB entry 8yey: TRIP4 ASCH domain in complex with ssDNA-1
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-23
Authors: Ding, J., Yang, H., Hu, C.
PDB entry 8yez: Human PIEZO1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-02-23
Authors: Zhang, M.F.
PDB entry 8yf0: Cryo-EM structure of human SV2A
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-02-23
Authors: Qu, Q., Liu, S., Zhou, Z.
PDB entry 8yf1: Cryo-EM structure of human SV2A in complex with Brivaracetam
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-02-23
Authors: Qu, Q., Liu, S., Zhou, Z.
PDB entry 8yf2: Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with raccoon dog ACE2 (local refinement)
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Nyctereutes procyonoides; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2024-02-23
Authors: Li, L.J., Luo, C.L., Qi, J.X., Gao, G.F.
PDB entry 8yf3: DNA cytosine C5-carboxymethyltransferase in complex with Cx-SAM
Classification: TRANSFERASE
Source organism: Synechococcus phage S-B43
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-23
Authors: Yang, Q., Zhang, Y.
PDB entry 8yf4: Cryo EM structure of human phosphate channel XPR1 at open and inward-facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-02-24
Authors: Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.
PDB entry 8yf5: Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Classification: TRANSCRIPTION
Source organism: Komagataella phaffii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-02-24
Authors: Yanagisawa, T., Murayama, Y., Ehara, H., Sekine, S.I.
PDB entry 8yf6: Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH8.0 (3.23A)
Classification: VIRUS
Source organism: Dragon grouper nervous necrosis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-02-24
Authors: Wang, C.H., Chang, W.H.
PDB entry 8yf7: Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH6.5 (2.82A)
Classification: VIRUS
Source organism: Dragon grouper nervous necrosis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2024-02-24
Authors: Wang, C.H., Chang, W.H.
PDB entry 8yf8: Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH5.0 (3.52A)
Classification: VIRUS
Source organism: Dragon grouper nervous necrosis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-02-24
Authors: Wang, C.H., Chang, W.H.
PDB entry 8yf9: Cryo-EM structure of Dragon Grouper nervous necrosis virion at pH6.5 (3.12A)
Classification: VIRUS
Source organism: Dragon grouper nervous necrosis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-02-24
Authors: Wang, C.H., Chang, W.H.
PDB entry 8yfc: Human PIEZO1-A1988V-MDFIC
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-02-24
Authors: Zhang, M.F.
PDB entry 8yfd: Cryo EM structure of human phosphate channel XPR1 at open state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2024-02-24
Authors: Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.
PDB entry 8yfe: Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex
Classification: TRANSCRIPTION
Source organism: Komagataella phaffii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-02-24
Authors: Yanagisawa, T., Murayama, Y., Ehara, H., Sekine, S.I.
PDB entry 8yfg: Human PIEZO1-R2456H_MDFIC
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-02-24
Authors: Zhang, M.F.
PDB entry 8yfh: Structure of alpha-1,3-glucanase agn1
Classification: HYDROLASE
Source organism: Schizosaccharomyces pombe DM3650
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-24
Authors: Horaguch, Y., Yano, S., Makabe, K.
PDB entry 8yfi: TRIP4 ASCH domain in complex with a 12bp dsDNA (5'-TGAGGTACCTCA-3')
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-02-24
Authors: Ding, J., Yang, H., Hu, C.
PDB entry 8yfj: TRIP4 ASCH domain in complex with a 12bp dsDNA (5'-ATTGGATCCAAT-3')
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-02-24
Authors: Ding, J., Yang, H., Hu, C.
PDB entry 8yfk: Crystal structure of FIP200 claw/TNIP1_FIR_pS123
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-24
Authors: Lv, M.Q., Wu, S.M.
PDB entry 8yfl: crystal structure of FIP200 claw/TNIP1_FIR_pS122pS123
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-24
Authors: Lv, M.Q., Wu, S.M.
PDB entry 8yfm: Crystal structure of FIP200 claw/TNIP1_FIR_pS122
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-24
Authors: Lv, M.Q., Wu, S.M.
PDB entry 8yfn: Crystal structure of FIP200 claw in complex with TNIP1_FIR_pS123 peptide with an elongated C terminus
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-02-24
Authors: Lv, M.Q., Wu, S.M.
PDB entry 8yfo: A cryo-EM structure of Ac-LA-PTH-PTH1R-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-02-25
Authors: Zhao, L., He, Q., Yuan, Q., Gu, Y., He, X., Shan, H., Xu, H.E.
PDB entry 8yfp: Chito oligosaccharide deacetylase from vibrio campbellii (VhCOD)
Classification: HYDROLASE
Source organism: Vibrio campbellii ATCC BAA-1116
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-02-25
Authors: Sirikan, P., Tamo, F., Robinson, R.C., Wipa, S.
PDB entry 8yfq: Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex
Classification: TRANSCRIPTION
Source organism: Komagataella phaffii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-02-25
Authors: Murayama, Y., Yanagisawa, T., Ehara, H., Sekine, S.
PDB entry 8yfr: Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft
Classification: TRANSCRIPTION
Source organism: Komagataella phaffii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-25
Authors: Murayama, Y., Yanagisawa, T., Ehara, H., Sekine, S.
PDB entry 8yfs: MRGPRE-Gq-scFv16-complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Equus quagga; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-02-25
Authors: Zhong, Y.N.
PDB entry 8yft: Cryo-EM structure of SARS-CoV-2 alpha variant spike protein in complex with raccoon dog ACE2 (local refinement)
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Nyctereutes procyonoides; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-02-25
Authors: Li, L.J., Luo, C.L., Qi, J.X., Gao, G.F.
PDB entry 8yfu: Cryo EM structure of human phosphate channel XPR1 at intermediate state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.59 Å
Deposited: 2024-02-25
Authors: Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.
PDB entry 8yfw: Cryo EM structure of human phosphate channel XPR1 at intermediate state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-02-25
Authors: Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.
PDB entry 8yfx: Cryo EM structure of human phosphate channel XPR1 at inward-facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-02-25
Authors: Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.
PDB entry 8yfy: CRYSTAL STRUCTURE OF THE EST1 H274D MUTANT AT PH 4.2
Classification: HYDROLASE
Source organism: Saccharolobus shibatae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-02-26
Authors: Unno, H., Oshima, Y., Nishino, T., Nakayama, T., Kusunoki, M.
PDB entry 8yfz: CRYSTAL STRUCTURE OF THE EST1 H274E MUTANT AT PH 4.2
Classification: HYDROLASE
Source organism: Saccharolobus shibatae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-26
Authors: Unno, H., Oshima, Y., Nishino, T., Nakayama, T., Kusunoki, M.
PDB entry 8yg0: Structural insights into Cutibacterium acnes acyl carrier protein
Classification: BIOSYNTHETIC PROTEIN
Source organism: Cutibacterium acnes SK137
Experimental method: SOLUTION NMR
Deposited: 2024-02-26
Authors: Oh, S., Jang, A., Cheon, D., Kim, Y.
PDB entry 8yg1: The Dimer Structure of DSR2 alone
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8yg2: Crystal structure of amyloidogenic peptide Piv-NFGAIL-NH2 from Islet Amyloid Polypeptide
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-02-26
Authors: Sawazaki, T., Sasaki, D., Sohma, Y.
PDB entry 8yg4: A cryo-EM structure of LA-PTH-R1-PTH1R-Gs complex structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-02-26
Authors: Zhao, L., He, Q., Yuan, Q., Gu, Y., He, X., Shan, H., Xu, H.E.
PDB entry 8yg6: The pre-fusion structure of baculovirus fusion protein GP64
Classification: STRUCTURAL PROTEIN
Source organism: Autographa californica nucleopolyhedrovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-02-26
Authors: Du, D., Guo, J., Li, S.
PDB entry 8yg7: HSA Copper Indomethacin Complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-02-26
Authors: Zhang, Z.L., Yang, F.
PDB entry 8yg8: The early intermediate structure of baculovirus fusion protein GP64
Classification: STRUCTURAL PROTEIN
Source organism: Autographa californica nucleopolyhedrovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-02-26
Authors: Du, D., Guo, J., Li, S.
PDB entry 8yga: The tetramer Structure of DSR2 alone
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.53 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8ygc: The Dimer Structure of DSR2-SPR
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.03 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8ygd: Rhodobacter blasticus RC-LH1 dimer
Classification: PHOTOSYNTHESIS
Source organism: Fuscovulum blasticum DSM 2131
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-02-26
Authors: Liu, L.N., Zhang, Y.Z., Wang, P., Christianson, B.M., Ugurlar, D.
PDB entry 8yge: pP1192R-DNA-m-AMSA complex DNA binding/cleavage domain
Classification: ISOMERASE/DNA
Source organism: African swine fever virus pig/Kenya/KEN-50/1950; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-02-26
Authors: Sun, J.Q., Liu, R.L.
PDB entry 8ygf: The tetramer Structure of SPR-DSR2 complex
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.66 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8ygg: pP1192R-apo Closed state
Classification: ISOMERASE
Source organism: African swine fever virus pig/Kenya/KEN-50/1950
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-02-26
Authors: Sun, J.Q., Liu, R.L.
PDB entry 8ygh: pP1192R-apo open state
Classification: ISOMERASE
Source organism: African swine fever virus pig/Kenya/KEN-50/1950
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-02-26
Authors: Sun, J.Q., Liu, R.L.
PDB entry 8ygj: SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Moloney murine leukemia virus; Streptococcus pyogenes; Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-02-26
Authors: Shuto, Y., Nakagawa, R., Hoki, M., Omura, S.N., Hirano, H., Itoh, Y., Nureki, O.
PDB entry 8ygk: The dimer Structure of SPR-DSR2(CTD) complex
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8ygl: Rhodobacter blasticus RC-LH1 monomer
Classification: PHOTOSYNTHESIS
Source organism: Fuscovulum blasticum DSM 2131
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-02-26
Authors: Liu, L.N., Zhang, Y.Z., Wang, P., Christianson, B.M., Ugurlar, D.
PDB entry 8ygm: The cryo-EM Structure of SPR
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8ygn: The Dimer Structure of DSR2-SPR with NAD
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.27 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8ygo: The complex by DSR2-CTD-SPR with NAD
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8ygp: The tetramer Structure of DSR2-SPR with NAD
Classification: HYDROLASE
Source organism: Bacillus subtilis A29
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-02-26
Authors: Gao, X., Zhu, H., Cui, S.
PDB entry 8ygq: Crystal structure of Human TEAD2 in complex with Cobimetinib
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2024-02-26
Authors: He, X.J., Hu, L.Q., Wu, M.Y.
PDB entry 8ygr: Cryo-EM structure of partial VP4 from simian rotavirus SA11
Classification: VIRUS
Source organism: Rotavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2024-02-26
Authors: Huang, Y., Sun, H., Zheng, Q., Li, S., Ge, S., Xia, N.
PDB entry 8ygs: Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13
Classification: VIRUS
Source organism: Mus musculus; Rotavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-02-26
Authors: Huang, Y., Sun, H., Zheng, Q., Li, S., Ge, S., Xia, N.
PDB entry 8ygt: Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (left side)
Classification: VIRUS
Source organism: Mus musculus; Rotavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-02-27
Authors: Huang, Y., Sun, H., Zheng, Q., Li, S., Ge, S., Xia, N.
PDB entry 8ygu: Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (right side)
Classification: VIRUS
Source organism: Mus musculus; Rotavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-02-27
Authors: Huang, Y., Sun, H., Zheng, Q., Li, S., Ge, S., Xia, N.
PDB entry 8ygv: F1 domain of Non-catalytic site depleted and epsilon C-terminal domain deleted FoF1-ATPase from Bacillus PS3,nucleotide depleted condition
Classification: MEMBRANE PROTEIN
Source organism: Bacillus sp. PS3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-02-27
Authors: Kobayashi, R., Nakano, A., Mitsuoka, K., Yokoyama, K.
PDB entry 8ygw: The Crystal Structure of MAPK11 from Biortus
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.301 Å
Deposited: 2024-02-27
Authors: Wang, F., Cheng, W., Yuan, Z., Lin, D., Guo, S.
PDB entry 8ygx: Structure of the PYK2 from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-27
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Zhang, B.
PDB entry 8ygy: Structure of the KLK1 from Biortus.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2024-02-27
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.
PDB entry 8ygz: The Crystal Structure of TGF beta R2 kinase domain from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-02-27
Authors: Wang, F., Cheng, W., Lv, Z., Ju, C., Wang, J.
PDB entry 8yh0: A3R-Gi complex bound to NECA
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-02-27
Authors: Oshima, H.S., Shihoya, W., Nureki, O.
PDB entry 8yh1: Crystal structure of Thermus thermophilus UMP kinase complexed with a phosphoryl group acceptor and donor.
Classification: TRANSFERASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-02-27
Authors: Fukui, K., Nishiwaki, A., Nakagawa, N., Kuramitsu, S., Masui, R.
PDB entry 8yh2: A3R-Gi complex bound to adenosine
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Human orthopneumovirus; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-02-27
Authors: Oshima, H.S., Shihoya, W., Nureki, O.
PDB entry 8yh3: A3R-Gi complex bound to m6A
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; human respiratory syncytial virus; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-27
Authors: Oshima, H.S., Shihoya, W., Nureki, O.
PDB entry 8yh4: Chito oligosaccharide deacetylase from vibrio campbellii (VhCOD) in complex with chitosanbiose (GlcN)2
Classification: HYDROLASE
Source organism: Vibrio campbellii ATCC BAA-1116
Experimental method: X-RAY DIFFRACTION
Resolution: 2.128 Å
Deposited: 2024-02-27
Authors: Sirikan, P., Tamo, F., Robinson, R.C., Wipa, S.
PDB entry 8yh5: A3R-Gi complex bound to i6A
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; human respiratory syncytial virus; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2024-02-27
Authors: Oshima, H.S., Shihoya, W., Nureki, O.
PDB entry 8yh6: A3R-Gi complex bound to namodenoson
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; human respiratory syncytial virus; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2024-02-27
Authors: Oshima, H.S., Shihoya, W., Nureki, O.
PDB entry 8yh8: F1 domain of Non-catalytic site depleted and epsilon C-terminal domain deleted FoF1-ATPase from Bacillus PS3,under ATP saturated condition
Classification: MOTOR PROTEIN
Source organism: Bacillus sp. PS3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-02-27
Authors: Kobayashi, R., Nakano, A., Mitsuoka, K., Yokoyama, K.
PDB entry 8yh9: Type I-FHNH Cascade complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Selenomonas sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-02-27
Authors: Li, Z.
PDB entry 8yha: Type I-EHNH Cascade-ssDNA complex
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Candidatus Cloacimonadota bacterium; Candidatus Cloacimonetes bacterium ADurb.Bin088
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-27
Authors: Li, Z.
PDB entry 8yhd: Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at post-state I
Classification: ANTIVIRAL PROTEIN
Source organism: metagenome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-02-28
Authors: Zhang, H., Deng, Z., Li, X.
PDB entry 8yhe: Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at post-state II
Classification: ANTIVIRAL PROTEIN
Source organism: metagenome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-02-28
Authors: Zhang, H., Deng, Z., Li, X.
PDB entry 8yhf: The Crystal Structure of the Type I TGF beta receptor from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.
PDB entry 8yhg: The complex structure of SdnG with its analogue of substrate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Sordaria araneosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-02-28
Authors: Zhou, J., Zang, X., Yi, T.
PDB entry 8yhh: The Crystal Structure of Mitotic Kinesin Eg5 from Biortus
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Lv, Z., Qi, J., Wu, B.
PDB entry 8yhi: The Crystal Structure of SHP1 from Biortus.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Yuan, Z., Qi, J., Shen, Z.
PDB entry 8yhk: The Crystal Structure of P21-Activated Kinases Pak4 from Biortus
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Lv, Z., Qi, J., Wu, B.
PDB entry 8yhl: The Crystal Structure of Tgf-Beta Type I Receptor (Alk5) from Biortus
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.
PDB entry 8yhm: The structure of SdnG covalently binding with the cope rearrangement product
Classification: BIOSYNTHETIC PROTEIN
Source organism: Sordaria araneosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-02-28
Authors: Zhou, J., Zang, X., Yi, T.
PDB entry 8yhn: Crystal structure of Cytochrome P450 107P2 from streptomyces avermitilis
Classification: OXIDOREDUCTASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.986 Å
Deposited: 2024-02-28
Authors: Jeong, E.S., Kim, V.C., Kim, C.M., Lee, Y.B.
PDB entry 8yho: Cryo-EM structure of the trimeric HerA
Classification: IMMUNE SYSTEM
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-02-28
Authors: Zhen, X., Xiong, X.
PDB entry 8yhp: Structure of the PGK1 from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Lv, Z., Ju, C., Wang, J.
PDB entry 8yhq: Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in pyraclostrobin-bound state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2024-02-28
Authors: Ye, Y., Li, Z.W., Yang, G.F.
PDB entry 8yhr: DHODH in complex with furocoumavirin
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-02-28
Authors: Hara, K., Okumura, H., Nakahara, M., Sato, M., Hashimoto, H., Osada, H., Watanabe, K.
PDB entry 8yhs: The Crystal Structure of BRDT from Biortus.
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Lu, Y.
PDB entry 8yht: hTLR3/minibinder 7.7
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-02-28
Authors: Kim, H., Kim, H.
PDB entry 8yhu: hTLR3/minibinder 8.6
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-02-28
Authors: Kim, H., Kim, H.
PDB entry 8yhv: Structure of the VP40 from Biortus.
Classification: VIRAL PROTEIN
Source organism: Zaire ebolavirus (strain Kikwit-95)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Zhang, B.
PDB entry 8yhw: The Crystal Structure of NF-kB-inducing Kinase (NIK) from Biortus
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-02-28
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.
PDB entry 8yhx: Cryo-EM structure of the trimeric HerA
Classification: IMMUNE SYSTEM
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-02-28
Authors: Zhen, X., Zhou, B., Xiong, X.
PDB entry 8yhz: The co-crystal structure of the Fab fragment of Ab-1080 with NaV1.7 VSDII peptide
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2024-02-28
Authors: Du, J., Zhang, Y., Zhu, R., Ding, Y.
PDB entry 8yi1: Crystal structure of a BAHD acyltransferase Ep07g04462
Classification: PLANT PROTEIN
Source organism: Echinacea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-02-28
Authors: Ren, R.B., Yu, L.Y., Pang, B.
PDB entry 8yi2: Crystal structure of a BAHD acyltransferase Ep07g04469
Classification: PLANT PROTEIN
Source organism: Echinacea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2024-02-28
Authors: Ren, R.B., Yu, L.Y., Pang, B.
PDB entry 8yi6: BesA wild-type from Streptomyces cattleyicolor
Classification: LIGASE
Source organism: Streptantibioticus cattleyicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2024-02-29
Authors: Fujishiro, T.
PDB entry 8yi7: The Cryo-EM structure of IL-12, receptor subunit beta-1 and receptor subunit beta-2 complex, local refinement
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2024-02-29
Authors: Chen, H.Q., Ge, X.F.
PDB entry 8yi8: The complex structure of SdnG with product
Classification: BIOSYNTHETIC PROTEIN
Source organism: Sordaria araneosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-02-29
Authors: Zhou, J., Zang, X., Yi, T.
PDB entry 8yi9: human PRPS2 isoform2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-29
Authors: Liu, J.L., Lu, G.M.
PDB entry 8yia: The selenomethionine contained structure of SdnG
Classification: BIOSYNTHETIC PROTEIN
Source organism: Sordaria araneosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2024-02-29
Authors: Zhou, J., Zang, X., Yi, T.
PDB entry 8yib: Staphylococcus aureus lipase -PSA complex - covalent bonding state
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-02-29
Authors: Kitadokoro, J., Kamitani, S., Kitadokoro, K.
PDB entry 8yic: SAR247799-bound S1PR1-Gi protein complex
Classification: MEMBRANE PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-02-29
Authors: Xu, Z., Yu, J.J., Shao, Z.H.
PDB entry 8yie: Crystal structure of GH13_30 alpha-glucosidase CmmB in complex with acarbose
Classification: HYDROLASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-02-29
Authors: Saburi, W., Tagami, T., Yu, J., Ose, T., Yao, M., Mori, H.
PDB entry 8yif: Crystal structure of GH13_30 alpha-glucosidase CmmB in complex with acarviosin
Classification: HYDROLASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-02-29
Authors: Saburi, W., Tagami, T., Yu, J., Ose, T., Yao, M., Mori, H.
PDB entry 8yig: DmDcr-2/LoqsPD/slm2 in initial binding state
Classification: STRUCTURAL PROTEIN/RNA
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-02-29
Authors: Cao, N., Su, S., Wang, J., Ma, J., Wang, H.-W.
PDB entry 8yih: DmDcr-2/LoqsPD/slm1 in pre-dicing state
Classification: STRUCTURAL PROTEIN/RNA
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.08 Å
Deposited: 2024-02-29
Authors: Cao, N., Su, S., Wang, J., Ma, J., Wang, H.-W.
PDB entry 8yii: DmDcr-2/LoqsPD/slm2 in dicing state
Classification: STRUCTURAL PROTEIN/RNA
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-02-29
Authors: Cao, N., Su, S., Wang, J., Ma, J., Wang, H.-W.
PDB entry 8yik: pP1192R-ATPase-domain
Classification: ISOMERASE
Source organism: African swine fever virus pig/Kenya/KEN-50/1950
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-02-29
Authors: Sun, J.Q., Liu, R.L.
PDB entry 8yil: Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in YF24228-bound state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-02-29
Authors: Ye, Y., Li, Z.W., Yang, G.F.
PDB entry 8yim: Crystal Structure of Human Rab23 in complex with GMPPNP (1.35 Angstroms Resolution)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-02-29
Authors: Chau, Y.Y., Liang, H., Aik, W.S.
PDB entry 8yin: Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in YF23694-bound state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-02-29
Authors: Ye, Y., Li, Z.W., Yang, G.F.
PDB entry 8yio: Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in azoxystrobin-bound state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2024-02-29
Authors: Ye, Y., Li, Z.W., Yang, G.F.
PDB entry 8yiv: N17.1.2 recognition of NRAS neoantigens
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.101 Å
Deposited: 2024-02-29
Authors: Wu, D.C., Mariuzza, R.A.
PDB entry 8yix: Cryo-EM structure of human proteasome assembly intermediate half-proteasome
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-02-29
Authors: Han, Y., Han, Q., Tang, Q., Zhang, Y., Liu, K.
PDB entry 8yiy: Cryo-EM structure of human proteasome assembly intermediate preholo-1
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-02-29
Authors: Han, Y., Han, Q., Tang, Q., Zhang, Y., Liu, K.
PDB entry 8yiz: Cryo-EM structure of human proteasome assembly intermediate preholo-2
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2024-02-29
Authors: Han, Y., Han, Q., Tang, Q., Zhang, Y., Liu, K.
PDB entry 8yj2: N17.1.2 recognition of NRAS neoantigens
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.261 Å
Deposited: 2024-02-29
Authors: Wu, D.C., Mariuzza, R.A.
PDB entry 8yj3: N17.1.2 recognition of NRAS neoantigens
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.503 Å
Deposited: 2024-02-29
Authors: Wu, D.C., Mariuzza, R.A.
PDB entry 8yj4: The complex structure of SdnG with its analogue of substrate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Sordaria araneosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-03-01
Authors: Zhou, J., Zang, X., Yi, T.
PDB entry 8yj5: Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
Classification: METAL TRANSPORT/IMMUNE SYSTEM
Source organism: Streptococcus pyogenes; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.66 Å
Deposited: 2024-03-01
Authors: Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K.
PDB entry 8yj6: Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
Classification: METAL TRANSPORT
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2024-03-01
Authors: Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K.
PDB entry 8yj7: Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
Classification: METAL TRNASPORT/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-03-01
Authors: Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K.
PDB entry 8yj8: Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
Classification: METAL TRANSPORT/IMMUNE SYSTEM
Source organism: Streptococcus pyogenes; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-03-01
Authors: Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K.
PDB entry 8yj9: Crystallization Studies of Concanavalin A in-Complex with D-Arabinose
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-03-01
Authors: Rasheed, S., Arif, R.
PDB entry 8yja: Structure of Vibrio vulnificus MARTX cysteine protease domain lacking beta-flap
Classification: TOXIN
Source organism: Vibrio vulnificus MO6-24/O
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-03-01
Authors: Chen, L., Khan, H., Tan, L., Li, X., Zhang, G., Im, Y.J.
PDB entry 8yjb: Cryo-EM structure of the human DSS1-INTAC complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-03-01
Authors: Zheng, H., Xu, Y., Cheng, J.
PDB entry 8yjc: Structure of Vibrio vulnificus MARTX cysteine protease domain C3727A
Classification: TOXIN
Source organism: Vibrio vulnificus MO6-24/O
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-03-01
Authors: Chen, L., Khan, H., Tan, L., Li, X., Zhang, G., Im, Y.J.
PDB entry 8yjf: Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and an H2A-H2B dimer
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.4 Å
Deposited: 2024-03-01
Authors: Gan, S.L., Yang, W.S., Xu, R.M.
PDB entry 8yjg: Crystal structure of the nucleotide-binding domain of Candida glabrata Hsp90
Classification: CHAPERONE
Source organism: Candida glabrata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-01
Authors: Tan, L., Li, X., Zhang, G., Chen, L., Im, Y.J.
PDB entry 8yjh: Structure of the human endogenous PCNA-FEN1 complex - State A
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-03-01
Authors: Tian, Y., Gao, N.
PDB entry 8yji: Room temperature structure of xylanase from Trichoderma longibrachiatum
Classification: HYDROLASE
Source organism: Trichoderma longibrachiatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-02
Authors: Nam, K.H.
PDB entry 8yjj: Crystal structure of xylanase from Trichoderma longibrachiatum
Classification: HYDROLASE
Source organism: Trichoderma longibrachiatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-02
Authors: Nam, K.H.
PDB entry 8yjl: Structure of the human endogenous PCNA-FEN1 complex - State B
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-03-02
Authors: Tian, Y., Gao, N.
PDB entry 8yjm: Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and a single chain H2B-H2A chimera
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.15 Å
Deposited: 2024-03-02
Authors: Gan, S.L., Yang, W.S., Xu, R.M.
PDB entry 8yjn: Structure of E. coli glycyl radical enzyme YbiW with bound glycerol
Classification: LYASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-03-02
Authors: Xue, B., Wei, Y., Robinson, R.C., Yew, W.S., Zhang, Y.
PDB entry 8yjo: Structure of E. coli glycyl radical enzyme PflD with bound malonate
Classification: LYASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-02
Authors: Xue, B., Wei, Y., Robinson, R.C., Yew, W.S., Zhang, Y.
PDB entry 8yjp: Cryo-EM structure of human apo GPR156
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-03-02
Authors: Ma, X.Y., Chen, L.N., Liao, M.H., Zhang, L.Y., Xi, K., Guo, J.M.
PDB entry 8yjq: Structure of the human endogenous PCNA-FEN1 complex - State C
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-03-02
Authors: Tian, Y., Gao, N.
PDB entry 8yjr: Structure of the human endogenous PCNA-FEN1 complex - State D
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-03-02
Authors: Tian, Y., Gao, N.
PDB entry 8yjs: Structure of the human endogenous PCNA-FEN1 complex - State E
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-03-02
Authors: Tian, Y., Gao, N.
PDB entry 8yjt: Cryo-EM structure of the flagellar C ring in the CCW state
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2024-03-02
Authors: Tan, J.X., Zhang, L., Zhou, Y., Zhu, Y.Q.
PDB entry 8yju: Structure of the human endogenous PCNA-FEN1 complex - State F
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-03-02
Authors: Tian, Y., Gao, N.
PDB entry 8yjv: Structure of the human endogenous PCNA-FEN1 complex - State G
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sa; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-03-03
Authors: Tian, Y., Gao, N.
PDB entry 8yjw: Structure of the human endogenous PCNA-FEN1 complex - State H
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-03-03
Authors: Tian, Y., Gao, N.
PDB entry 8yjx: Crystal structure of penicillin-binding protein 2 (PBP2) from Campylobacter jejuni
Classification: HYDROLASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2024-03-03
Authors: Choi, H.J., Ki, D.W., Yoon, S.I.
PDB entry 8yjy: Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens
Classification: ANTIVIRAL PROTEIN
Source organism: Serratia marcescens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-03
Authors: Xiao, J., Wang, L.
PDB entry 8yjz: Structure of the human endogenous PCNA-FEN1-RNase H2 complex - State D
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.15 Å
Deposited: 2024-03-03
Authors: Tian, Y., Gao, N.
PDB entry 8yk0: Cryo-EM structure of human GPR156-Gi3 complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-03-03
Authors: Ma, X.Y., Chen, L.N., Liao, M.H., Zhang, L.Y., Xi, K., Guo, J.M.
PDB entry 8yk1: Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct 23-844
Classification: HYDROLASE
Source organism: Bifidobacterium bifidum JCM 1254
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-03-04
Authors: Kashima, T., Ashida, H., Fushinobu, S.
PDB entry 8yk2: Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct T7-tag_24-700
Classification: HYDROLASE
Source organism: Bifidobacterium bifidum JCM 1254
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-03-04
Authors: Kashima, T., Akama, M., Ashida, H., Fushinobu, S.
PDB entry 8yk3: Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct T7-tag_24-673
Classification: HYDROLASE
Source organism: Bifidobacterium bifidum JCM 1254
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2024-03-04
Authors: Kashima, T., Ashida, H., Fushinobu, S.
PDB entry 8yk4: Structure of SARS-CoV-2 RBD and antibody NT-108
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-03-04
Authors: Anraku, Y., Kita, S., Onodera, T., Sato, A., Tadokoro, T., Adachi, Y., Ito, S., Suzuki, T., Sasaki, J., Shiwa, N., Iwata, N., Nagata, N., Kazuki, Y., Oshimura, M., Sasaki, M., Orba, Y., Suzuki, T., Sawa, H., Hashiguchi, T., Fukuhara, H., Takahashi, Y., Maenaka, K.