LiteFold/PDB huggingface dataset:
PDB entry 3wlh: Crystal Structure Analysis of Plant Exohydrolase
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Hrmova, M.
PDB entry 3wli: Crystal Structure Analysis of Plant Exohydrolase
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Hrmova, M.
PDB entry 3wlj: Crystal structure of barley beta-D-glucan glucohydrolase isoenzyme EXO1 in complex with 3-deoxy-glucose
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Hrmova, M.
PDB entry 3wlk: Crystal structure of barley beta-D-glucan glucohydrolase isoenzyme EXO1 in complex with 4-deoxy-glucose
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Hrmova, M.
PDB entry 3wll: Crystal structure of barley beta-D-glucan glucohydrolase isoenzyme EXO1 in complex with PEG400
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Hrmova, M.
PDB entry 3wlm: Crystal structure of barley beta-D-glucan glucohydrolase isoenzyme exo1 in complex with octyl-O-glucoside
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Hrmova, M.
PDB entry 3wln: Crystal structure of barley beta-D-glucan glucohydrolase isoenzyme EXO1 in complex with octyl-S-glucoside
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Hrmova, M.
PDB entry 3wlo: Crystal Structure Analysis of Plant Exohydrolase
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Luang, S., Hrmova, M.
PDB entry 3wlp: Crystal Structure Analysis of Plant Exohydrolase
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Luang, S., Hrmova, M.
PDB entry 3wlq: Crystal Structure Analysis of Plant Exohydrolase
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Luang, S., Hrmova, M.
PDB entry 3wlr: Crystal Structure Analysis of Plant Exohydrolase
Classification: HYDROLASE
Source organism: Hordeum vulgare subsp. vulgare
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2013-11-12
Authors: Streltsov, V.A., Hrmova, M., Luang, S.
PDB entry 3wlu: Crystal Structure of human galectin-9 NCRD with Selenolactose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2013-11-14
Authors: Makyio, H., Suzuki, T., Ando, H., Yamada, Y., Ishida, H., Kiso, M., Wakatsuki, S., Kato, R.
PDB entry 3wlv: Thermostable urate oxidase from Bacillus sp. TB-90
Classification: OXIDOREDUCTASE
Source organism: Bacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.747 Å
Deposited: 2013-11-14
Authors: Hibi, T., Hayashi, Y., Itoh, T.
PDB entry 3wlw: Molecular Architecture of the ErbB2 Extracellular Domain Homodimer
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.088 Å
Deposited: 2013-11-15
Authors: Hu, S., Lou, Z.Y., Guo, Y.J.
PDB entry 3wlx: Crystal structure of low-specificity L-threonine aldolase from Escherichia coli
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2013-11-15
Authors: Qin, H.-M., Imai, F.L., Miyakawa, T., Kataoka, M., Okai, M., Hou, F., Ohtsuka, J., Nagata, K., Shimizu, S., Tanokura, M.
PDB entry 3wmb: Crystal structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with naphthalimide derivative Q1
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2013-11-16
Authors: Liu, T., Zhou, Y., Chen, L., Yang, Q.
PDB entry 3wmc: Crystal structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with naphthalimide derivative Q2
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.095 Å
Deposited: 2013-11-16
Authors: Chen, L., Zhou, Y., Chen, L., Yang, Q.
PDB entry 3wmd: Crystal structure of epoxide hydrolase MonBI
Classification: ISOMERASE
Source organism: Streptomyces cinnamonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2013-11-16
Authors: Minami, A., Ose, T., Sato, K., Oikawa, A., Kuroki, K., Maenaka, K., Oguri, H., Oikawa, H.
PDB entry 3wme: Crystal structure of an inward-facing eukaryotic ABC multidrug transporter
Classification: TRANSPORT PROTEIN
Source organism: Cyanidioschyzon merolae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.751 Å
Deposited: 2013-11-18
Authors: Kodan, A., Yamaguchi, T., Nakatsu, T., Kato, H.
PDB entry 3wmf: Crystal structure of an inward-facing eukaryotic ABC multitrug transporter G277V/A278V/A279V mutant
Classification: TRANSPORT PROTEIN
Source organism: Cyanidioschyzon merolae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-11-18
Authors: Kodan, A., Yamaguchi, T., Nakatsu, T., Kato, H.
PDB entry 3wmg: Crystal structure of an inward-facing eukaryotic ABC multidrug transporter G277V/A278V/A279V mutant in complex with an cyclic peptide inhibitor, aCAP
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Cyanidioschyzon merolae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-11-18
Authors: Kodan, A., Yamaguchi, T., Nakatsu, T., Sakiyama, K., Hipolito, C.J., Fujioka, A., Hirokane, R., Ikeguchi, K., Watanabe, B., Hirtake, J., Kimura, Y., Suga, H., Ueda, K., Kato, H.
PDB entry 3wmh: Human PPAR gamma ligand binding domain in complex with a gammma selective synthetic partial agonist MEKT75
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2013-11-19
Authors: Oyama, T., Ohashi, M., Miyachi, H., Kusunoki, M.
PDB entry 3wmi: Crystal structure of EIAV wild type gp45
Classification: VIRAL PROTEIN
Source organism: Equine
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-11-19
Authors: Liu, X., Du, J., Qiao, W.
PDB entry 3wmj: Crystal structure of EIAV vaccine gp45
Classification: VIRAL PROTEIN
Source organism: Equine
Experimental method: X-RAY DIFFRACTION
Resolution: 1.998 Å
Deposited: 2013-11-19
Authors: Liu, X., Du, J., Qiao, W.
PDB entry 3wmk: Crystal structure of Hen egg-white lysozyme in pH 4.5 Sodium Acetatewith 1M NaCl at 277K
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2013-11-19
Authors: Lim, H., Rho, J., Hyun, J.K., Kim, Y.J.
PDB entry 3wml: Structure of phosphotriesterase mutant (S308L/Y309A) from Agrobacterium radiobacter
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2013-11-21
Authors: Jackson, C.J., Carr, P.D., Sugrue, E.
PDB entry 3wmm: Crystal structure of the LH1-RC complex from Thermochromatium tepidum in C2 form
Classification: PHOTOSYNTHESIS
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.008 Å
Deposited: 2013-11-22
Authors: Niwa, S., Takeda, K., Wang-Otomo, Z.-Y., Miki, K.
PDB entry 3wmp: Crystal structure of SLL-2
Classification: SUGAR BINDING PROTEIN
Source organism: Sinularia lochmodes
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-11-22
Authors: Kita, A., Jimbo, M., Sakai, R., Morimoto, Y., Miki, K.
PDB entry 3wmq: Crystal structure of the complex between SLL-2 and GalNAc.
Classification: SUGAR BINDING PROTEIN
Source organism: Sinularia lochmodes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2013-11-22
Authors: Kita, A., Jimbo, M., Sakai, R., Morimoto, Y., Miki, K.
PDB entry 3wmr: Crystal structure of VinJ
Classification: HYDROLASE
Source organism: Streptomyces halstedii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2013-11-22
Authors: Shinohara, Y., Miyanaga, A., Kudo, F., Eguchi, T.
PDB entry 3wms: The crystal structure of Y195I mutant alpha-cyclodextrin glycosyltransferase from Paenibacillus macerans
Classification: TRANSFERASE
Source organism: Paenibacillus macerans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-11-24
Authors: Xie, T., Hou, Y.J., Li, D.F., Yue, Y., Qian, S.J., Chao, Y.P.
PDB entry 3wmt: Crystal structure of feruloyl esterase B from Aspergillus oryzae
Classification: HYDROLASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2013-11-25
Authors: Suzuki, K., Ishida, T., Igarashi, K., Koseki, T., Fushinobu, S.
PDB entry 3wmu: The structure of an anti-cancer lectin mytilec apo-form from the mussel Mytilus galloprovincialis
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus galloprovincialis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2013-11-27
Authors: Terada, D., Kawai, F., Noguchi, H., Unzai, S., Park, S.-Y., Ozeki, Y., Tame, J.R.H.
PDB entry 3wmv: The structure of an anti-cancer lectin mytilec with ligand from the mussel Mytilus galloprovincialis
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus galloprovincialis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2013-11-27
Authors: Terada, D., Kawai, F., Noguchi, H., Unzai, S., Park, S.-Y., Ozeki, Y., Tame, J.R.H.
PDB entry 3wmw: GalE-like L-Threonine dehydrogenase from Cupriavidus necator (apo form)
Classification: OXIDOREDUCTASE
Source organism: Ralstonia eutropha
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2013-11-29
Authors: Nakano, S., Okazaki, S., Tokiwa, H., Asano, Y.
PDB entry 3wmx: GalE-like L-Threonine dehydrogenase from Cupriavidus necator (holo form)
Classification: OXIDOREDUCTASE
Source organism: Ralstonia eutropha
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-11-29
Authors: Nakano, S., Okazaki, S., Tokiwa, H., Asano, Y.
PDB entry 3wmy: Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase
Classification: HYDROLASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2013-11-29
Authors: Fujimoto, Z., Maehara, T., Ichinose, H., Michikawa, M., Harazono, K., Kaneko, S.
PDB entry 3wmz: Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase ethylmercury derivative
Classification: HYDROLASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-11-29
Authors: Fujimoto, Z., Maehara, T., Ichinose, H., Michikawa, M., Harazono, K., Kaneko, S.
PDB entry 3wn0: Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase in complex with L-arabinose
Classification: HYDROLASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-11-29
Authors: Fujimoto, Z., Maehara, T., Ichinose, H., Michikawa, M., Harazono, K., Kaneko, S.
PDB entry 3wn1: Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase in complex with xylotriose
Classification: HYDROLASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-11-29
Authors: Fujimoto, Z., Maehara, T., Ichinose, H., Michikawa, M., Harazono, K., Kaneko, S.
PDB entry 3wn2: Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase in complex with xylohexaose
Classification: HYDROLASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2013-11-29
Authors: Fujimoto, Z., Maehara, T., Ichinose, H., Michikawa, M., Harazono, K., Kaneko, S.
PDB entry 3wn4: Crystal structure of human TLR8 in complex with DS-877
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2013-12-02
Authors: Tanji, H., Ohto, U., Shimizu, T.
PDB entry 3wn5: Crystal structure of asymmetrically engineered Fc variant in complex with FcgRIIIa
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2013-12-05
Authors: Kadono, S., Mimoto, F., Katada, H., Igawa, T., Kamikawa, T., Hattori, K.
PDB entry 3wn6: Crystal structure of alpha-amylase AmyI-1 from Oryza sativa
Classification: HYDROLASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2013-12-05
Authors: Ochiai, A., Sugai, H., Harada, K., Tanaka, S., Ishiyama, Y., Ito, K., Tanaka, T., Uchiumi, T., Taniguchi, M., Mitsui, T.
PDB entry 3wn7: Crystal Structure of Keap1 in Complex with the N-terminal region of the Nrf2 transcription factor
Classification: TRANSCRIPTION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2013-12-05
Authors: Fukutomi, T., Takagi, K., Mizushima, T., Ohuchi, N., Yamamoto, M.
PDB entry 3wn8: Crystal Structure of Collagen-Model Peptide, (POG)3-PRG-(POG)4
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2013-12-06
Authors: Okuyama, K., Haga, M., Noguchi, K., Tanaka, T.
PDB entry 3wnb: Crystal structure of EF-Pyl in complex with GMPPNP
Classification: TRANSLATION
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-12-08
Authors: Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3wnc: Crystal structure of EF-Pyl in complex with GDP
Classification: TRANSLATION
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-12-08
Authors: Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3wnd: Crystal structure of EF-Pyl
Classification: TRANSLATION
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2013-12-08
Authors: Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3wne: Cyclic hexapeptide PKIDNG in complex with HIV-1 integrase
Classification: Viral Protein/Peptide
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-12-09
Authors: Wielens, J., Chalmers, D.K., Parker, M.W.
PDB entry 3wnf: Cyclic hexapeptide CKIDNC in complex with HIV-1 integrase
Classification: Viral Protein/Peptide
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2013-12-09
Authors: Wielens, J., Chalmers, D.K., Parker, M.W.
PDB entry 3wng: Cyclic hexapeptide PKIDNp in complex with HIV-1 integrase
Classification: Viral Protein/Peptide
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2013-12-09
Authors: Wielens, J., Chalmers, D.K., Parker, M.W.
PDB entry 3wnh: Cyclic hexapeptide PKZDNv in complex with HIV-1 integrase
Classification: Viral Protein/Peptide
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2013-12-10
Authors: Wielens, J., Chalmers, D.K., Parker, M.W.
PDB entry 3wni: 1.50 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2013-12-10
Authors: Fukuda, Y., Inoue, T.
PDB entry 3wnj: 1.20 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2013-12-10
Authors: Fukuda, Y., Inoue, T.
PDB entry 3wnk: Crystal Structure of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase
Classification: TRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-12-10
Authors: Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Kobayashi, M., Kimura, A., Funane, K.
PDB entry 3wnl: D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltohexaose
Classification: TRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-12-10
Authors: Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
PDB entry 3wnm: D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltoheptaose
Classification: TRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2013-12-10
Authors: Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
PDB entry 3wnn: D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltooctaose
Classification: TRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2013-12-10
Authors: Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Suzuki, S., Kitamura, S., Kobayashi, M., Kimura, A., Funane, K.
PDB entry 3wno: D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with cycloisomaltooctaose
Classification: TRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-12-10
Authors: Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Kishine, N., Suzuki, R., Kobayashi, M., Kimura, A., Funane, K.
PDB entry 3wnp: D308A, F268V, D469Y, A513V, and Y515S quintuple mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltoundecaose
Classification: TRANSFERASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-12-10
Authors: Suzuki, R., Suzuki, N., Fujimoto, Z., Momma, M., Kimura, K., Kitamura, S., Kimura, A., Funane, K.
PDB entry 3wnq: Crystal structure of (R)-carbonyl reductase H49A mutant from Candida Parapsilosis in complex with 2-hydroxyacetophenone
Classification: OXIDOREDUCTASE
Source organism: Candida parapsilosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2013-12-15
Authors: Wang, S.S., Nie, Y., Xu, Y., Zhang, R.Z., Huang, C.H., Chan, H.C., Guo, R.T., Ko, T.P., Xiao, R.
PDB entry 3wnr: Multiple binding modes of benzyl isothiocyanate inhibitor complexed with Macrophage Migration Inhibitory Factor
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.008 Å
Deposited: 2013-12-16
Authors: Spencer, E.S., Dale, E.J., Gommans, A.L., Rutledge, M.T., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
PDB entry 3wns: Allyl isothiocyanate inhibitor complexed with Macrophage Migration Inhibitory Factor
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.658 Å
Deposited: 2013-12-16
Authors: Spencer, E.S., Dale, E.J., Gommans, A.L., Rutledge, M.T., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
PDB entry 3wnt: Multiple binding modes of benzyl isothiocyanate inhibitor complexed with Macrophage Migration Inhibitory Factor
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.074 Å
Deposited: 2013-12-16
Authors: Spencer, E.S., Dale, E.J., Gommans, A.L., Rutledge, M.T., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
PDB entry 3wnu: The crystal structure of catalase-peroxidase, KatG, from Synechococcus PCC7942
Classification: OXIDOREDUCTASE
Source organism: Synechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-12-17
Authors: Tada, T., Wada, K., Kamachi, S.
PDB entry 3wnv: Crystal structure of a glyoxylate reductase from Paecilomyes thermophila
Classification: OXIDOREDUCTASE
Source organism: Paecilomyces sp. J18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2013-12-17
Authors: Duan, X., Hu, S., Zhou, P., Zhou, Y., Jiang, Z.
PDB entry 3wnw: Structure of Mouse H-chain modified ferritin
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2013-12-17
Authors: Zarivach, R., Lewin, L.
PDB entry 3wnx: Crystal structure of ERGIC-53/MCFD2, Calcium/Man3-bound form
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2013-12-18
Authors: Satoh, T., Suzuki, K., Yamaguchi, T., Kato, K.
PDB entry 3wny: A simplified BPTI variant with poly Lys amino acid tag (C3K) at the C-terminus
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2013-12-18
Authors: Islam, M.M.
PDB entry 3wnz: Crystal structure of Bacillus subtilis YwfE, an L-amino acid ligase, with bound ADP-Mg-Pi
Classification: LIGASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-12-19
Authors: Tsuda, T., Kojima, S.
PDB entry 3wo0: Crystal structure of Bacillus subtilis YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala
Classification: LIGASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-12-19
Authors: Tsuda, T., Kojima, S.
PDB entry 3wo1: Crystal structure of Trp332Ala mutant YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala
Classification: LIGASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-12-19
Authors: Tsuda, T., Kojima, S.
PDB entry 3wo2: Crystal structure of human interleukin-18
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2013-12-19
Authors: Tsutsumi, N., Kimura, T., Arita, K., Ariyoshi, M., Ohnishi, H., Kondo, N., Shirakawa, M., Kato, Z., Tochio, H.
PDB entry 3wo3: Crystal structure of IL-18 in complex with IL-18 receptor alpha
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2013-12-19
Authors: Tsutsumi, N., Kimura, T., Arita, K., Ariyoshi, M., Ohnishi, H., Kondo, N., Shirakawa, M., Kato, Z., Tochio, H.
PDB entry 3wo4: Crystal structure of the IL-18 signaling ternary complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2013-12-19
Authors: Tsutsumi, N., Kimura, T., Arita, K., Ariyoshi, M., Ohnishi, H., Kondo, N., Shirakawa, M., Kato, Z., Tochio, H.
PDB entry 3wo5: Crystal structure of S147Q of Rv2613c from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2013-12-20
Authors: Mori, S., Wachino, J., Arakawa, Y., Shibayama, K.
PDB entry 3wo6: Crystal structure of YidC from Bacillus halodurans (form I)
Classification: MEMBRANE PROTEIN
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.403 Å
Deposited: 2013-12-20
Authors: Kumazaki, K., Tsukazaki, T., Ishitani, R., Nureki, O.
PDB entry 3wo7: Crystal structure of YidC from Bacillus halodurans (form II)
Classification: MEMBRANE PROTEIN
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.201 Å
Deposited: 2013-12-20
Authors: Kumazaki, K., Tsukazaki, T., Ishitani, R., Nureki, O.
PDB entry 3wo8: Crystal structure of the beta-N-acetylglucosaminidase from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2013-12-20
Authors: Mine, S., Kado, Y., Watanabe, M., Inoue, T., Ishikawa, K.
PDB entry 3wo9: Crystal structure of the lamprey variable lymphocyte receptor C
Classification: IMMUNE SYSTEM
Source organism: Lethenteron camtschaticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-12-20
Authors: Kanda, R., Sutoh, Y., Kasamatsu, J., Maenaka, K., Kasahara, M., Ose, T.
PDB entry 3woa: Crystal structure of lambda repressor (1-45) fused with maltose-binding protein
Classification: DNA BINDING PROTEIN, SUGAR BINDING PROTEIN
Source organism: Enterobacteria phage lambda; Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-12-25
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 3wob: Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form I
Classification: UNKNOWN FUNCTION
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-12-26
Authors: Garenaux, E., Kanagawa, M., Tsuchiyama, T., Hori, K., Kanazawa, T., Goshima, A., Chiba, M., Yasue, H., Ikeda, A., Yamaguchi, Y., Sato, C., Kitajima, K.
PDB entry 3woc: Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form II
Classification: UNKNOWN FUNCTION
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-12-26
Authors: Garenaux, E., Kanagawa, M., Tsuchiyama, T., Hori, K., Kanazawa, T., Goshima, A., Chiba, M., Yasue, H., Ikeda, A., Yamaguchi, Y., Sato, C., Kitajima, K.
PDB entry 3wod: RNA polymerase-gp39 complex
Classification: TRANSFERASE/TRANSCRIPTION
Source organism: Thermus phage P23-45; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2013-12-26
Authors: Tagami, S., Sekine, S., Minakhin, L., Esyunina, D., Akasaka, R., Shirouzu, M., Kulbachinskiy, A., Severinov, K., Yokoyama, S.
PDB entry 3woe: Crystal structure of P23-45 gp39 (6-109) bound to Thermus thermophilus RNA polymerase beta-flap domain
Classification: TRANSFERASE/TRANSCRIPTION
Source organism: Thermus phage P23-45; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.351 Å
Deposited: 2013-12-26
Authors: Tagami, S., Sekine, S., Minakhin, L., Esyunina, D., Akasaka, R., Shirouzu, M., Kulbachinskiy, A., Severinov, K., Yokoyama, S.
PDB entry 3wof: Crystal structure of P23-45 gp39 (6-132) bound to Thermus thermophilus RNA polymerase beta-flap domain
Classification: TRANSFERASE/TRANSCRIPTION
Source organism: Thermus phage P23-45; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.298 Å
Deposited: 2013-12-26
Authors: Tagami, S., Sekine, S., Minakhin, L., Esyunina, D., Akasaka, R., Shirouzu, M., Kulbachinskiy, A., Severinov, K., Yokoyama, S.
PDB entry 3wog: Crystal structure plant lectin in complex with ligand
Classification: SUGAR BINDING PROTEIN
Source organism: Phaseolus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-12-26
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 3woh: Structure of Ketoreductase SiaM from Streptomyces sp. A7248
Classification: OXIDOREDUCTASE
Source organism: Streptomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-12-29
Authors: Wang, H., Zhang, H.
PDB entry 3woi: Crystal structure of the DAP BII (S657A)
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3woj: Crystal structure of the DAP BII
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3wok: Crystal structure of the DAP BII (Space)
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3wol: Crystal structure of the DAP BII dipeptide complex I
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3wom: Crystal structure of the DAP BII dipeptide complex II
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3won: Crystal structure of the DAP BII dipeptide complex III
Classification: HYDROLASE
Source organism: Pseudoxanthomonas mexicana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3woo: Crystal structure of the DAP BII hexapeptide complex I
Classification: Hydrolase/Hormone
Source organism: Pseudoxanthomonas mexicana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3wop: Crystal structure of the DAP BII hexapeptide complex II
Classification: Hydrolase/Hormone
Source organism: Pseudoxanthomonas mexicana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3woq: Crystal structure of the DAP BII hexapeptide complex III
Classification: Hydrolase/Hormone
Source organism: Pseudoxanthomonas mexicana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3wor: Crystal structure of the DAP BII octapeptide complex
Classification: Hydrolase/Hormone
Source organism: Pseudoxanthomonas mexicana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2013-12-29
Authors: Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
PDB entry 3wou: Crystal Structure of The Recombinant Thaumatin II at 0.99 A
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2013-12-30
Authors: Masuda, T., Mikami, B., Tani, F.
PDB entry 3wov: Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi
Classification: TRANSFERASE
Source organism: Pyrococcus abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2014-01-05
Authors: Matsuoka, R., Nyirenda, J., Maita, N., Kohda, D.
PDB entry 3wow: Crystal structure of human CK2a with AMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-01-06
Authors: Kinoshita, T., Nakaniwa, T., Sekiguchi, Y., Sogabe, Y., Sakurai, A., Nakamura, S., Nakanishi, I., Shimada, K., Tanaka, M.
PDB entry 3woy: Crystal structure of CLASP2 TOG domain (TOG2)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-01-06
Authors: Hayashi, I., Maki, T.
PDB entry 3woz: Crystal structure of CLASP2 TOG domain (TOG3)
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-01-06
Authors: Hayashi, I., Maki, T.
PDB entry 3wp0: Crystal structure of Dlg GK in complex with a phosphor-Lgl2 peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.039 Å
Deposited: 2014-01-08
Authors: Zhu, J., Shang, Y., Wan, Q., Xia, Y., Chen, J., Du, Q., Zhang, M.
PDB entry 3wp1: Phosphorylation-dependent interaction between tumor suppressors Dlg and Lgl
Classification: PEPTIDE BINDING PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.804 Å
Deposited: 2014-01-08
Authors: Zhu, J., Shang, Y., Wan, Q., Xia, Y., Chen, J., Du, Q., Zhang, M.
PDB entry 3wp3: Xylanase 11C from Talaromyces cellulolyticus (formerly known as Acremonium cellulolyticus)
Classification: HYDROLASE
Source organism: Talaromyces funiculosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2014-01-09
Authors: Ishikawa, K., Inoue, H., Kataoka, M.
PDB entry 3wp4: The crystal structure of native CDBFV from Neocallimastix patriciarum
Classification: HYDROLASE
Source organism: Neocallimastix patriciarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2014-01-09
Authors: Cheng, Y.S., Chen, C.C., Huang, C.H., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wp5: The crystal structure of mutant CDBFV E109A from Neocallimastix patriciarum
Classification: HYDROLASE
Source organism: Neocallimastix patriciarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2014-01-09
Authors: Cheng, Y.S., Chen, C.C., Huang, C.H., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wp6: The complex structure of CDBFV E109A with xylotriose
Classification: HYDROLASE
Source organism: Neocallimastix patriciarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2014-01-09
Authors: Cheng, Y.S., Chen, C.C., Huang, C.H., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wp8: Acinetobacter sp. Tol 5 AtaA C-terminal Ylhead fused to GCN4 adaptors (Chead)
Classification: CELL ADHESION
Source organism: Acinetobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2014-01-10
Authors: Koiwai, K., Hartmann, M.D., Yoshimoto, S., Nur 'Izzah, N., Suzuki, A., Linke, D., Lupas, A.N., Hori, K.
PDB entry 3wp9: Crystal structure of antifreeze protein from an Antarctic sea ice bacterium Colwellia sp.
Classification: ANTIFREEZE PROTEIN
Source organism: Colwellia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-01-10
Authors: Hanada, Y., Nishimiya, Y., Miura, A., Tsuda, S., Kondo, H.
PDB entry 3wpa: Acinetobacter sp. Tol 5 AtaA C-terminal stalk_FL fused to GCN4 adaptors (CstalkFL)
Classification: CELL ADHESION
Source organism: Acinetobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2014-01-10
Authors: Koiwai, K., Hartmann, M.D., Yoshimoto, S., Nur 'Izzah, N., Suzuki, A., Linke, D., Lupas, A.N., Hori, K.
PDB entry 3wpb: Crystal structure of horse TLR9 (unliganded form)
Classification: DNA BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-01-11
Authors: Ohto, U., Tanji, H., Shimizu, T.
PDB entry 3wpc: Crystal structure of horse TLR9 in complex with agonistic DNA1668_12mer
Classification: DNA BINDING PROTEIN/DNA
Source organism: Equus caballus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-01-11
Authors: Ohto, U., Tanji, H., Shimizu, T.
PDB entry 3wpd: Crystal structure of horse TLR9 in complex with inhibitory DNA4084
Classification: DNA BINDING PROTEIN/DNA
Source organism: Equus caballus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2014-01-11
Authors: Ohto, U., Tanji, H., Shimizu, T.
PDB entry 3wpe: Crystal structure of bovine TLR9 in complex with agonistic DNA1668_12mer
Classification: DNA BINDING PROTEIN/DNA
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2014-01-11
Authors: Ohto, U., Tanji, H., Shimizu, T.
PDB entry 3wpf: Crystal structure of mouse TLR9 (unliganded form)
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.959 Å
Deposited: 2014-01-11
Authors: Ohto, U., Shimizu, T.
PDB entry 3wpg: Crystal structure of mouse TLR9 in complex with inhibitory DNA4084 (form 1)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.246 Å
Deposited: 2014-01-11
Authors: Ohto, U., Shimizu, T.
PDB entry 3wph: Crystal structure of mouse TLR9 in complex with inhibitory DNA4084 (form 2)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.327 Å
Deposited: 2014-01-11
Authors: Ohto, U., Shimizu, T.
PDB entry 3wpi: Crystal structure of mouse TLR9 in complex with inhibitory DNA_super
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.246 Å
Deposited: 2014-01-11
Authors: Ohto, U., Shimizu, T.
PDB entry 3wpj: SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; NATIVE
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-01-12
Authors: Mizutani, R., Saiga, R.
PDB entry 3wpk: SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 750 SEC
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-01-12
Authors: Mizutani, R., Saiga, R.
PDB entry 3wpl: SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 2510 SEC
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-01-12
Authors: Mizutani, R., Saiga, R.
PDB entry 3wpm: Crystal structure of the anaerobic DesB-gallate complex by co-crystallization
Classification: OXIDOREDUCTASE
Source organism: Sphingobium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2014-01-14
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wpn: Kinesin spindle protein Eg5 in complex with ATP-competitive inhibitor PVZB1194
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-01-14
Authors: Yokoyama, H., Katoh, S., Fujii, S.
PDB entry 3wpo: Acinetobacter sp. Tol 5 AtaA YDD-DALL3 domains in C-terminal stalk fused to GCN4 adaptors (CstalkC1i)
Classification: CELL ADHESION
Source organism: Acinetobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 2.397 Å
Deposited: 2014-01-14
Authors: Koiwai, K., Hartmann, M.D., Yoshimoto, S., Nur 'Izzah, N., Suzuki, A., Linke, D., Lupas, A.N., Hori, K.
PDB entry 3wpp: Acinetobacter sp. Tol 5 AtaA YDD-DALL3 domains in C-terminal stalk fused to GCN4 adaptors (CstalkC1iii)
Classification: CELL ADHESION
Source organism: Acinetobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.952 Å
Deposited: 2014-01-15
Authors: Koiwai, K., Hartmann, M.D., Yoshimoto, S., Nur 'Izzah, N., Suzuki, A., Linke, D., Lupas, A.N., Hori, K.
PDB entry 3wpq: crystal structure of the GAP domain of MgcRacGAP(S387A)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2014-01-15
Authors: Murayama, K., Kato-Murayama, M., Shirouzu, M., Kitamura, T., Yokoyama, S.
PDB entry 3wpr: Acinetobacter sp. Tol 5 AtaA N-terminal half of C-terminal stalk fused to GCN4 adaptors (CstalkN)
Classification: CELL ADHESION
Source organism: Acinetobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.899 Å
Deposited: 2014-01-15
Authors: Koiwai, K., Hartmann, M.D., Yoshimoto, S., Nur 'Izzah, N., Suzuki, A., Linke, D., Lupas, A.N., Hori, K.
PDB entry 3wps: crystal structure of the GAP domain of MgcRacGAP(S387D)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-01-15
Authors: Murayama, K., Kato-murayama, M., Shirouzu, M., Kitamura, T., Yokoyama, S.
PDB entry 3wpt: Crystal structure of closed dimer of human importin-alpha1 (Rch1)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.629 Å
Deposited: 2014-01-17
Authors: Miyatake, H., Sanjoh, A., Matsuda, G., Tatsumi, Y., Dohmae, N., Aida, Y.
PDB entry 3wpu: Full-length beta-fructofuranosidase from Microbacterium saccharophilum K-1
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-01-17
Authors: Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.
PDB entry 3wpv: Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/F447V/F470Y/P500S
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2014-01-17
Authors: Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.
PDB entry 3wpw: Structure of PomBc5, a periplasmic fragment of PomB from Vibrio
Classification: MEMBRANE PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-01-17
Authors: Takao, M., Sakuma, M., Zhu, S., Homma, M., Kojima, S., Imada, K.
PDB entry 3wpx: Structure of PomBc4, a periplasmic fragment of PomB from Vibrio alginolyticus
Classification: MEMBRANE PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-01-17
Authors: Takao, M., Sakuma, M., Zhu, S., Homma, M., Kojima, S., Imada, K.
PDB entry 3wpy: Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447V/P500S
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-01-17
Authors: Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.
PDB entry 3wpz: Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447P/F470Y/P500S
Classification: HYDROLASE
Source organism: Arthrobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2014-01-17
Authors: Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.
PDB entry 3wq0: Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with gluco-oligosaccharide
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2014-01-21
Authors: Kataoka, M., Ishikawa, K.
PDB entry 3wq1: Structure of hyperthermophilic family 12 endocellulase from Pyrococcus furiosus in complex with cello-oligosaccharide
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2014-01-21
Authors: Kataoka, M., Ishikawa, K.
PDB entry 3wq4: Crystal structure of beta-primeverosidase
Classification: HYDROLASE
Source organism: Camellia sinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-01-22
Authors: Saino, H.
PDB entry 3wq5: beta-Primeverosidase in complex with disaccharide substrate-analog N-beta-primeverosylamidine, natural aglycone derivative
Classification: HYDROLASE
Source organism: Camellia sinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-01-22
Authors: Saino, H.
PDB entry 3wq6: beta-Primeverosidase in complex with disaccharide substrate-analog N-beta-primeverosylamidine, artificial aglycone derivative
Classification: HYDROLASE
Source organism: Camellia sinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-01-22
Authors: Saino, H.
PDB entry 3wq7: New crystal form of the hyperthermophilic family 12 endo-cellulase from Pyrococcus furiosus
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2014-01-23
Authors: Kataoka, M., Ishikawa, K.
PDB entry 3wq8: Monomer structure of hyperthermophilic beta-glucosidase mutant forming a dodecameric structure in the crystal form
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2014-01-23
Authors: Nakabayashi, M., Kataoka, M., Watanabe, M., Ishikawa, K.
PDB entry 3wq9: Crystal structure of Hsp90-alpha N-terminal domain in complex with 2-(4-Hydroxy-cyclohexylamino)-4-[5-(4-phenyl-imidazol-1-yl)-isoquinolin-1-yl]-benzamide
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-01-23
Authors: Chong, K.T., Yamashita, S., Oshiumi, H., Uno, T., Kitade, M.
PDB entry 3wqa: Acinetobacter sp. Tol 5 AtaA YDD-DALL3 domains in C-terminal stalk fused to GCN4 adaptors (CstalkC1ii)
Classification: CELL ADHESION
Source organism: Acinetobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2014-01-24
Authors: Koiwai, K., Hartmann, M.D., Yoshimoto, S., Nur 'Izzah, N., Suzuki, A., Linke, D., Lupas, A.N., Hori, K.
PDB entry 3wqb: Crystal structure of aeromonas sobria serine protease (ASP) and the chaperone (ORF2) complex
Classification: HYDROLASE/CHAPERONE
Source organism: Aeromonas sobria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2014-01-24
Authors: Kobayashi, H., Yoshida, T., Miyakawa, T., Kato, R., Tashiro, M., Yamanaka, H., Tanokura, M., Tsuge, H.
PDB entry 3wqc: D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23
Classification: LYASE
Source organism: Delftia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-01-25
Authors: Yasutake, Y., Matsumoto, Y., Wada, M.
PDB entry 3wqd: D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23 complexed with D-erythro-3-hydroxyaspartate
Classification: LYASE
Source organism: Delftia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-01-25
Authors: Yasutake, Y., Matsumoto, Y., Wada, M.
PDB entry 3wqe: D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23 complexed with D-allothreonine
Classification: LYASE
Source organism: Delftia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-01-25
Authors: Yasutake, Y., Matsumoto, Y., Wada, M.
PDB entry 3wqf: D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23 in the metal-free form
Classification: LYASE
Source organism: Delftia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-01-25
Authors: Yasutake, Y., Matsumoto, Y., Wada, M.
PDB entry 3wqg: D-threo-3-hydroxyaspartate dehydratase C353A mutant in the metal-free form
Classification: LYASE
Source organism: Delftia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2014-01-25
Authors: Yasutake, Y., Matsumoto, Y., Wada, M.