LiteFold/PDB huggingface dataset:
PDB entry 9e4d: Human ASIC1a at pH 7.5 with linear transmembrane domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4e: Human ASIC1a at pH 6.5 with linear transmembrane domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4f: Human ASIC1a at pH 5.7 with domain-swapped transmembrane domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4g: Human ASIC1a at pH 5.7 with linear transmembrane domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4h: Human ASIC1a at pH 5.7 with rotated, domain-swapped transmembrane domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4i: Human ASIC1a at pH 7.5 in complex with MitTx
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Micrurus tener tener
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Yoshioka, C., Cahill, J., Baconguis, I.
PDB entry 9e4j: Human ASIC1a at pH 6.5 in complex with MitTx
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Micrurus tener tener
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4k: Human ASIC1a at pH 8.5, T26V mutation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-10-24
Authors: Hartfield, K.A., Cahill, J., Baconguis, I.
PDB entry 9e4n: E. coli acetyl-CoA carboxylase, narrow helical tube, 4.04 Angstrom
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2024-10-25
Authors: Xu, X., Silva de Sousa, A., Boram, T.J., Jiang, W., Lohman, R.J.
PDB entry 9e4o: E. coli acetyl-CoA carboxylase, wide stacked tube, 3.98 Angstrom
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2024-10-25
Authors: Xu, X., Silva de Sousa, A., Boram, T.J., Jiang, W., Lohman, R.J.
PDB entry 9e4q: A DARPin fused to the 3TEL crystallization chaperone via a gly-gly-gly fusion
Classification: PROTEIN BINDING
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.58 Å
Deposited: 2024-10-25
Authors: Pedroza Romo, M.J., Noakes, E., Soleimani, S., Smith, T., Doukov, T., Moody, J.D.
PDB entry 9e4r: Escherichia coli encapsulin-associated DyP peroxidase
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-10-25
Authors: Andreas, M.P., Ubilla, N.C., Giessen, T.W.
PDB entry 9e4s: TAD from Carmabin Biosynthetic Pathway - Crystal Form 1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Moorena producens 3L
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-10-25
Authors: Rankin, M.R., Smith, J.L.
PDB entry 9e4u: TAD from Carmabin Biosynthetic Pathway in complex with NADH - Crystal Form 1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Moorena producens 3L
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2024-10-25
Authors: Rankin, M.R., Smith, J.L.
PDB entry 9e4v: The structure of human vacuolar protein sorting 34 catalytic domain bound to MES
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-10-25
Authors: Abiodun, W.O., Fullmer, A., Tsubaki, E., Doukov, T., Moody, J.D.
PDB entry 9e4w: Structure of Bacillus phage SPO1 anti-CBASS 4 (Acb4) in complex with 3'3'-cGAMP
Classification: VIRAL PROTEIN
Source organism: Bacillus phage SPO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-10-25
Authors: Chang, R.B., Toyoda, H.C., Hobbs, S.J., Richmond-Buccola, D., Wein, T., Burger, N., Chouchani, E.T., Sorek, R., Kranzusch, P.J.
PDB entry 9e4x: TAD from Carmabin Biosynthetic Pathway - Crystal Form 2
Classification: BIOSYNTHETIC PROTEIN
Source organism: Moorena producens 3L
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2024-10-25
Authors: Rankin, M.R., Smith, J.L.
PDB entry 9e4y: GluA2-gamma2 complex bound to memantine, glutamate, and cyclothiazide
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-10-25
Authors: Montano Romero, A., Carrillo, E., Jayaraman, V., Twomey, E.C.
PDB entry 9e4z: GluA2-gamma2 complex bound glutamate and cyclothiazide
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-10-25
Authors: Montano Romero, A., Carrillo, E., Jayaraman, V., Twomey, E.C.
PDB entry 9e50: TAD from Carmabin Biosynthetic Pathway in complex with NAD - Crystal Form 2
Classification: BIOSYNTHETIC PROTEIN
Source organism: Moorena producens 3L
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-10-26
Authors: Rankin, M.R., Smith, J.L.
PDB entry 9e51: Cryo-EM structure of human LPHN2 (ADGRL2)/G13 complex in lipid nanodiscs
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-10-26
Authors: He, F., Skiniotis, G.
PDB entry 9e55: Crystal structure of the A/Viet Nam/1203/2004(H5N1) influenza virus hemagglutinin in complex with cyclic peptide iHA-100
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2024-10-27
Authors: Nguyen, T.K.Y., Wilson, I.A.
PDB entry 9e56: TAD from Carmabin Biosynthetic Pathway with Disulfide between Cys2238 and Dephosphocoenzyme A - Crystal Form 2
Classification: BIOSYNTHETIC PROTEIN
Source organism: Moorena producens 3L
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-10-27
Authors: Rankin, M.R., Smith, J.L.
PDB entry 9e58: YscN Yersinia ATPase delta 1-92
Classification: HYDROLASE
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-10-28
Authors: Ellis, P.K., Barker, S.A., Dickenson, N.E., Johnson, S.J.
PDB entry 9e5a: Crystal structure of Acanthamoeba polyphaga mimivirus (APMV) vIF4G 53-312
Classification: TRANSLATION
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2024-10-28
Authors: Fels, J.M., Hill, A.B., Kranzusch, P.J., Lee, A.S.Y.
PDB entry 9e5b: Crystal structure of Cotonvirus japonicum vIF4E 1-236 in complex with m7Gppp(2'OMeA)pU
Classification: TRANSLATION
Source organism: Cotonvirus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-10-28
Authors: Fels, J.M., Hill, A.B., Kranzusch, P.J., Lee, A.S.Y.
PDB entry 9e5c: Cryo-EM structure of 96 nm repeat of microtubule doublet from T. brucei flagellum
Classification: MOTOR PROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-28
Authors: Xia, X., Shimogawa, M.M., Wang, H., Liu, S., Wijono, A., Langousis, G., Kassem, A.M., Wohlschlegel, J.A., Hill, K., Zhou, Z.H.
PDB entry 9e5d: Discovery of an Orally Biovailable KRAS G12D Inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-10-28
Authors: Deller, M.C., Epling, L.B.
PDB entry 9e5e: Escherichia coli DyP peroxidase-loaded encapsulin shell
Classification: VIRUS LIKE PARTICLE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.17 Å
Deposited: 2024-10-28
Authors: Andreas, M.P., Ubilla, N.C., Giessen, T.W.
PDB entry 9e5f: Discovery of an Orally Bioavailable KRAS G12D Inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-10-28
Authors: Deller, M.C., Epling, L.B.
PDB entry 9e5g: Cryo-EM structure of Burkholderia cenocepacia orotate phosphoribosyltransferase
Classification: TRANSFERASE
Source organism: Burkholderia cenocepacia J2315
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-10-28
Authors: Sharma, N., French, J.B.
PDB entry 9e5h: env2 cobalamin riboswitch aptamer domain in complex with cyanocobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5i: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-nitrobenzene-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5j: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-methoxybenzene-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5k: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-3-methylbenzene-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5l: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-benzothiophene-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5m: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4,1'-biphenyl-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5n: The primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant H534F
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-10-28
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9e5o: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-pyrene-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5p: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-benzofuran-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5q: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-N-phenylpropiolamide-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5r: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-N-ethylpropiolamide-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Batey, R.T.
PDB entry 9e5s: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-(4-phenyl-2,3,4-triazole)-propanamine-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Zeps, N.J., Batey, R.T.
PDB entry 9e5t: env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-(4-phenyl-2,3,4-triazole)-guanidinium-cobalamin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2024-10-28
Authors: Olenginski, L.T., Zep, N.J., Batey, R.T.
PDB entry 9e5u: The primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant N511P
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2024-10-28
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9e5v: The postfusion conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB)
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-10-28
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9e5w: Proline utilization A (PutA) from Sinorhizobium meliloti inactivated by N-propargylglycine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-10-28
Authors: Tanner, J.J.
PDB entry 9e5x: The prefusion conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant S392C and A527C
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2024-10-28
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9e5y: T4 Bacteriophage Replicative Polymerase Captured in Polymerase Exchange State 1
Classification: replication/DNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2024-10-28
Authors: Li, H., Feng, X.
PDB entry 9e5z: Cryo-EM structure of COP9 signalosome
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-28
Authors: Shi, H., Zheng, N.
PDB entry 9e60: Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 7C8
Classification: VIRUS
Source organism: Canine parvovirus 2a; Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-10-28
Authors: Lee, H., Hafenstein, S.
PDB entry 9e61: Cryo-EM structure of Saccharomyces cerevisiae Pmt4 apo form
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-10-29
Authors: Du, M., Yuan, Z., Li, H.
PDB entry 9e62: Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-10-29
Authors: Hiotis, G., Will, N., Walz, T.
PDB entry 9e63: Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs treated with beta-cyclodextrin
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-10-29
Authors: Hiotis, G., Will, N., Walz, T.
PDB entry 9e64: Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs treated with lysophosphatidylcholine
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-10-29
Authors: Hiotis, G., Will, N., Walz, T.
PDB entry 9e65: Cryo-EM structure of mechanosensitive channel YnaI A155V mutant in conformation 1
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-29
Authors: Hiotis, G., Will, N., Walz, T.
PDB entry 9e66: Cryo-EM structure of mechanosensitive channel YnaI A155V mutant in conformation 2
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-29
Authors: Hiotis, G., Will, N., Walz, T.
PDB entry 9e67: Cryo-EM structure of mechanosensitive channel YnaI in DDPC nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-10-29
Authors: Hiotis, G., Will, N., Walz, T.
PDB entry 9e68: Cryo-EM structure of MscS/YnaI chimera in DOPC nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-10-29
Authors: Hiotis, G., Will, N., Walz, T.
PDB entry 9e69: Antibody 5E10
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2024-10-29
Authors: Zhou, T., Sao-Fong Cheung, C., Kwong, P.D.
PDB entry 9e6a: Pseudomonas putida KT2440 IclR-type transcription factor (PP_2609)
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-10-29
Authors: Kadriu, E.K., Prezioso, S.M., Christendat, D.S.
PDB entry 9e6b: Octopus sensory receptor CRT1 bound to Norharmane
Classification: MEMBRANE PROTEIN
Source organism: Octopus bimaculoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-10-29
Authors: Jiang, H., Hibbs, R.E.
PDB entry 9e6c: Octopus sensory receptor CRT1 in complex with H3C
Classification: MEMBRANE PROTEIN
Source organism: Octopus bimaculoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-10-29
Authors: Jiang, H., Hibbs, R.E.
PDB entry 9e6d: octopus sensory receptor CRT1 bound to Lumichrome
Classification: MEMBRANE PROTEIN
Source organism: Octopus bimaculoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-10-29
Authors: Jiang, H., Hibbs, R.E.
PDB entry 9e6e: Yeast Fzf1 Zn-fingers 1-3 bound to YHB1 26 bp DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2024-10-29
Authors: Moore, S.A., Ma, C., Xiao, W.
PDB entry 9e6h: Cryo-EM structure of Maackia amurensis seed Leukoagglutinin (lectin), MASL
Classification: SUGAR BINDING PROTEIN
Source organism: Maackia amurensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-10-30
Authors: Nayak, A.R., Goldberg, G.S., Temiakov, D.
PDB entry 9e6i: Cryo-EM structure of Saccharomyces cerevisiae Pmt4-Ccw5 complex
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-10-30
Authors: Du, M., Yuan, Z., Li, H.
PDB entry 9e6j: DH726-1 Fab bound to hemagglutinin from influenza A/Solomon Islands/3/2006
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Alphainfluenzavirus influenzae; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-10-30
Authors: Finney, J., Harrison, S.C.
PDB entry 9e6k: Fully human monoclonal antibody targeting the cysteine-rich substrate-interacting region of ADAM17 on cancer cells.
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-10-30
Authors: Saha, N., De La Cruz, M.J., Goldgur, Y., Nikolov, D.B.
PDB entry 9e6l: Cryo-EM structure of yeast Rad51 nucleoprotein filament bound to Rad54peptide
Classification: RECOMBINATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-10-30
Authors: Shin, Y., Greene, E.C.
PDB entry 9e6m: Crystal structure of the G200R mutant from the maize chloroplastic photosynthetic NADP(+)-dependent malic enzyme
Classification: PHOTOSYNTHESIS
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-10-30
Authors: Klinke, S., Schneberger, N., Boehm, J.M., Willms, S., Hagelueken, G., Geyer, M., Maurino, V., Alvarez, C.E.
PDB entry 9e6n: Cryo-EM structure of yeast Rad51 nucleoprotein filament bound to Hed1
Classification: RECOMBINATION/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-10-30
Authors: Shin, Y., Greene, E.C.
PDB entry 9e6o: Structure of a Mouse KC Filament
Classification: CYTOKINE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2024-10-30
Authors: White, M.A., Sepuru, K.M., Rajarathnam, K.
PDB entry 9e6p: Structure of a Mouse KC dimeric mutant
Classification: CYTOKINE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-10-30
Authors: White, M.A., Sepuru, K.M., Rajarathnam, K.
PDB entry 9e6q: Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
Classification: RIBOSOME
Source organism: Pyrobaculum calidifontis JCM 11548
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.95 Å
Deposited: 2024-10-30
Authors: Nissley, A.J., Cate, J.H.D.
PDB entry 9e6r: BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGACCA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-10-30
Authors: Horton, J.R., Cheng, X.
PDB entry 9e6s: BCL11A ZF4-6 with K784T Mutation in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGACCA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-10-30
Authors: Horton, J.R., Cheng, X.
PDB entry 9e6t: BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGCCCA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2024-10-30
Authors: Horton, J.R., Cheng, X.
PDB entry 9e6u: Crystal structure of human Taspase1 in complex with ligand SMDC1041556
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.488 Å
Deposited: 2024-10-31
Authors: Doamekpor, S.K., Hamilton, K., Choi, P.H., Tong, L.
PDB entry 9e6v: Cryo-EM structure of Saccharomyces cerevisiae Pmt4-Ccw5 complex
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-10-31
Authors: Du, M., Yuan, Z., Li, H.
PDB entry 9e6w: NF-kappaB RelA homo-dimer bound to a kappaB site of Cxcl2 gene
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-10-31
Authors: Biswas, T., Shahabi, S., Ghosh, G.
PDB entry 9e6x: Crystal structure of ferritin
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-10-31
Authors: Huang, Q.
PDB entry 9e6y: Structure of CD112 (Nectin-2) domain 1 bound to CD112R (PVRIG)
Classification: IMMUNOSUPPRESSANT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-10-31
Authors: Luca, V.C., Singh, S.
PDB entry 9e6z: Streptavidin-E101Q-S112F-K121A bound to Cu(II)-biotin-ethyl-dipicolylamine cofactor
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-10-31
Authors: Uyeda, K.S., Follmer, A.H., Borovik, A.S.
PDB entry 9e70: Human XRN1 with Adenosine-3',5'-Bisphosphate (pAp) Bound
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-10-31
Authors: Lockbaum, G.J., Lynes, M.M., Sickmier, E.A., Grigoriu, S., Boriack-Sjodin, P.A.
PDB entry 9e71: Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome
Classification: RIBOSOME
Source organism: Pyrobaculum calidifontis JCM 11548
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2024-10-31
Authors: Nissley, A.J., Cate, J.H.D.
PDB entry 9e72: HvrF methyltransferase with SAH and pantaphos
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pantoea ananatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2024-10-31
Authors: Kuzelka, K.P., Nair, S.K.
PDB entry 9e73: Cryo-EM structure of RaiA RNA from Clostridium acetobutylicum
Classification: RNA
Source organism: Clostridium acetobutylicum ATCC 824
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-10-31
Authors: He, Y., Zhong, J., Yang, Y., Gunsalus, R.P., Zhou, Z.H., Feigon, J.
PDB entry 9e74: Cryo-EM structure of RaiA RNA from Nocardioides
Classification: RNA
Source organism: Nocardioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-10-31
Authors: He, Y., Zhong, J., Yang, Y., Gunsalus, R.P., Zhou, Z.H., Feigon, J.
PDB entry 9e75: Cryo-EM structure of RaiA RNA from Mogibacterium pumilum
Classification: RNA
Source organism: Mogibacterium pumilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-10-31
Authors: He, Y., Zhong, J., Yang, Y., Gunsalus, R.P., Zhou, Z.H., Feigon, J.
PDB entry 9e76: Yeast V-ATPase Vo proton channel bound to nanobody 1WVA25
Classification: PROTON TRANSPORT
Source organism: Lama glama; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-10-31
Authors: Wilkens, S., Knight, K.
PDB entry 9e77: Cryo-EM structure of CSN-N8 in complex with CSN5i-3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-11-01
Authors: Shi, H., Zheng, N.
PDB entry 9e78: 48-nm repeat of the Leishmania tarentolae doublet microtubule
Classification: STRUCTURAL PROTEIN
Source organism: Leishmania tarentolae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-01
Authors: Doran, M.H., Ren, P., Hoog, J.L., Brown, A.
PDB entry 9e79: Crystal structure of the MIR domain of the S. cerevisiae mannosyltransferase Pmt4
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-11-01
Authors: Du, M., Yuan, Z., Li, H.
PDB entry 9e7a: Crystal structure of the MIR domain of the S. cerevisiae mannosyltransferase Pmt4 in Complex with Ccw5
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-11-01
Authors: Du, M., Yuan, Z., Li, H.
PDB entry 9e7b: X-ray structure of SARS-CoV-2 main protease V186G covalently bound to compound GRL-051-22 at 1.3 A
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-11-01
Authors: Beechboard, S.N., Mesecar, A.D., Ghosh, A.K., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9e7c: TRK-fused Gene (TFG) PB1 Domain D60A/D62R Variant
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.906 Å
Deposited: 2024-11-01
Authors: Schuh, A.L., Bhattacharyya, B., Keck, J.L., Audhya, A.
PDB entry 9e7d: Crystal structure of HIV-1 RRE SLII A31C mutant in complex with Fab BL3-6
Classification: RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2024-11-01
Authors: Ojha, M., Koirala, D.
PDB entry 9e7e: Crystal structure of HIV-1 RRE SLII A31CG39C mutant in complex with Fab BL3-6
Classification: RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-11-01
Authors: Ojha, M., Koirala, D.
PDB entry 9e7f: Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome in complex with Dri
Classification: RIBOSOME
Source organism: Pyrobaculum calidifontis JCM 11548
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-11-01
Authors: Nissley, A.J., Cate, J.H.D.
PDB entry 9e7g: Crystal structure of HIV-1 RRE SLII G34C mutant in complex with Fab BL3-6
Classification: RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-11-01
Authors: Ojha, M., Koirala, D.
PDB entry 9e7h: CryoEM structure of BchN-BchB bound to Pchlide from the DPOR under turnover complex dataset
Classification: OXIDOREDUCTASE
Source organism: Cereibacter sphaeroides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-11-01
Authors: Kashyap, R., Antony, E.
PDB entry 9e7i: The deep-primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F L97E and L101E
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-11-01
Authors: Mou, Z., Wang, S., Dai, X.
PDB entry 9e7j: Cu-bound tetrameric copper storage protein 1 with anti-rhodopsin 1D4 epitope
Classification: METAL BINDING PROTEIN
Source organism: Methylosinus trichosporium OB3b
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-11-01
Authors: Yao, Y., Oken, A.C., Farrens, D.L.
PDB entry 9e7k: Crystal structure of the UCH37 RPN13 DEUBAD complex bound to an inhibitory nanobody in the canonical ubiquitin binding site
Classification: HYDROLASE
Source organism: Camelidae mixed library; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-11-01
Authors: Patel, R., Li, Y., Strieter, E., Das, C.
PDB entry 9e7l: Yeast V-ATPase Vo proton channel bound to nanobody 2WVA7
Classification: PROTON TRANSPORT
Source organism: Lama glama; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-11-02
Authors: Wilkens, S., Knight, K., Roh, S.-H., Park, J.B.
PDB entry 9e7m: In situ cryoEM structure of bacteriophage Ur-lambda tail tip complex
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-11-03
Authors: Yu, H., Liu, J., Molineux, I.J.
PDB entry 9e7n: Pfs230 D13D14 in complex with nanobody W2809
Classification: PROTEIN BINDING
Source organism: Plasmodium falciparum 3D7; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2024-11-03
Authors: Tan, L.L., Dietrich, M.H., Tham, W.H.
PDB entry 9e7o: Pfs230 D13D14 in complex with nanobody W2810
Classification: PROTEIN BINDING
Source organism: Plasmodium falciparum 3D7; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-11-03
Authors: Dietrich, M.H., Tan, L.L., Tham, W.H.
PDB entry 9e7p: Pfs230 D13D14 in complex with nanobody W2812
Classification: PROTEIN BINDING
Source organism: Plasmodium falciparum 3D7; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2024-11-03
Authors: Dietrich, M.H., Tan, L.L., Tham, W.H.
PDB entry 9e7q: Structure of a coiled-coil peptide from C. elegans EDC4
Classification: GENE REGULATION
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-11-04
Authors: Valkov, E.
PDB entry 9e7r: CryoEM structure of PAR2 with GB88
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-11-04
Authors: Lyu, X., Lyu, Z., Malyutin, A.G., McGrath, A.P., Kang, Y.
PDB entry 9e7s: X-ray structure of SARS-CoV-2 main protease covalently bound to compound GRL-051-22 at 1.75 A.
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-11-04
Authors: Beechboard, S.N., Mesecar, A.D., Ghosh, A.K., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9e7t: Cryo-EM structure of NOT1:NOT7:PieF
Classification: GENE REGULATION
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-11-04
Authors: Levdansky, E., Deme, J., Lea, S.M., Valkov, E.
PDB entry 9e7u: Cryo-EM structure of NOT1:NOT8:PieF
Classification: GENE REGULATION
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-11-04
Authors: Levdansky, E., Deme, J., Lea, S.M., Valkov, E.
PDB entry 9e7v: Off-pathway Mycobacterium tuberculosis transcription initiation promoter complex (RNA Polymerase with Sigma-A, CarD, and RbpA)
Classification: transcription/DNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-11-04
Authors: Brewer, J.J., Campbell, E.A., Darst, S.A.
PDB entry 9e7w: Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 3G6
Classification: VIRUS
Source organism: Canine parvovirus 2a; Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-11-04
Authors: Lee, H., Hafenstein, S.
PDB entry 9e7x: Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 2C5
Classification: VIRUS
Source organism: Canine parvovirus 2a; Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-04
Authors: Lee, H., Hafenstein, S.
PDB entry 9e7y: De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 7-mer RNA and disordered Beta' Lid element (RNA Polymerase with Sigma-A, CarD, and RbpA)
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-11-04
Authors: Brewer, J.J., Campbell, E.A., Darst, S.A.
PDB entry 9e7z: Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 3G6
Classification: VIRUS
Source organism: Canine parvovirus 2a
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.02 Å
Deposited: 2024-11-04
Authors: Lee, H., Hafenstein, S.
PDB entry 9e80: Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 2C5
Classification: VIRUS
Source organism: Canine parvovirus 2a
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.81 Å
Deposited: 2024-11-04
Authors: Lee, H., Hafenstein, S.
PDB entry 9e81: Cryo-EM structure of COP9 signalosome in complex with CSN5i-3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-11-04
Authors: Shi, H., Zheng, N.
PDB entry 9e82: ACKR3 phosphorylated by GRK5 in complex with arrestin2 and Fab7
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-11-04
Authors: Chen, Q., Fuller, J., Tesmer, J.J.G.
PDB entry 9e83: TMPRSS2 crystal structure following acylation by UCSF_157
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2024-11-04
Authors: Fraser, B.J., Dong, A., Seitova, A., Li, Y., Hutchinson, A., Young, N., Bender, B., Gahbauer, S., Edwards, A., Shoichet, B., Craik, C., Arrowsmith, C.H.
PDB entry 9e84: De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and disordered Sigma-A region 4 domain (RNA Polymerase with Sigma-A, CarD, and RbpA)
Classification: Transcription/DNA/RNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-11-05
Authors: Brewer, J.J., Campbell, E.A., Darst, S.A.
PDB entry 9e85: De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 6-mer RNA and closed Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Classification: Transcription/DNA/RNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-05
Authors: Brewer, J.J., Campbell, E.A., Darst, S.A.
PDB entry 9e86: De Novo Mycobacterium tuberculosis transcription initiation promoter complex with 5-mer RNA and open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Classification: Transcription/DNA/RNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-11-05
Authors: Brewer, J.J., Campbell, E.A., Darst, S.A.
PDB entry 9e87: De Novo Mycobacterium tuberculosis transcription initiation pre-RPO promoter complex with open Beta' clamp (RNA Polymerase with Sigma-A, CarD, and RbpA)
Classification: Transcription/DNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-11-05
Authors: Brewer, J.J., Campbell, E.A., Darst, S.A.
PDB entry 9e88: De novo backtracked transcription elongation complex of Mycobacterium tuberculosis RNA polymerase on a linear DNA fragment (TEC-Backtracked)
Classification: Transcription/DNA/RNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-11-05
Authors: Brewer, J.J., Campbell, E.A., Darst, S.A.
PDB entry 9e89: CPV2a capsid complexed with scFv2
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Canine parvovirus 2b; Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-11-05
Authors: Lee, H., Hafenstein, S.
PDB entry 9e8a: Integrin aIIbb3 bent conformation from human platelet membrane crude preparation
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-11-05
Authors: Han, X., Nieman, M.T.
PDB entry 9e8b: Integrin aIIbb3 intermediate conformation from human platelet membrane crude preparation
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-11-05
Authors: Han, X., Nieman, M.T.
PDB entry 9e8c: Integrin aIIbb3 dimer conformation from human platelet membrane crude preparation
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-11-05
Authors: Han, X., Nieman, M.T.
PDB entry 9e8d: CPV2a capsid complexed with scFv1
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Canine parvovirus 2b; Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-11-05
Authors: Lee, H., Hafenstein, S.
PDB entry 9e8e: Hybrid G-quadruplex from Tetrahymena thermophila telomeric sequence in complex with TrisQO Form 2
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-11-05
Authors: Ali, A., Yatsunyk, L.A.
PDB entry 9e8g: Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt5 at top of spiral staircase
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8h: Human proteasome in resting state conformation bound to TXNL1 in backward conformation
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8i: Human proteasome in resting state conformation bound to TXNL1 in Forward conformation
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8j: Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt1 at top of spiral staircase
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8k: Nub1/Fat10-processing human 26S proteasome with Rpt6 at top of spiral staircase (AAA+ motor locally refined)
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.08 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8l: Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt4 at top of spiral staircase
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8m: Covalent inhibitor VVD-442 bound to the RAS binding domain (RBD) of PI3Ka
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.827 Å
Deposited: 2024-11-05
Authors: Bernard, S.M., Tamiya, J.
PDB entry 9e8n: Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt3 at top of spiral staircase (locally refined on the AAA+ motor)
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8o: Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt2 at top of spiral staircase and partially unfolded Eos
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens; Lobophyllia hemprichii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8p: Crystal Structure of GABARAP-ATG3 conjugate
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-11-05
Authors: Ohashi, K., Otomo, T.
PDB entry 9e8q: Nub1/Fat10-processing human 26S proteasome with Rpt2 at top of spiral staircase
Classification: MOTOR PROTEIN, HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-11-05
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9e8r: X-ray structure of SARS-CoV-2 main protease T190I covalently bound to compound GRL-051-22 at 1.5 A
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-11-06
Authors: Beechboard, S.N., Mesecar, A.D., Ghosh, A.K., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9e8s: Structure of thioferritin (PfDPSL) with ferrihydrite growth at a single three-fold pore.
Classification: METAL BINDING PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2024-11-06
Authors: Gauvin, C.C., Waghwani, H.K., Tokmina-Lukaszewska, M., Bothner, B., Douglas, T., Lawrence, C.M.
PDB entry 9e8u: (Apo)Alpha-synuclein fibril structures from MSA patient brain
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-11-06
Authors: Lu, J., Sawaya, M.R., Ge, P., Boyer, D.R., Eisenberg, D.S.
PDB entry 9e8v: Complex fibril structure of MSA alpha-synuclein with CNS-11g at 4 hours
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-11-06
Authors: Lu, J., Sawaya, M.R., Ge, P., Boyer, D.R., Eisenberg, D.S.
PDB entry 9e8w: Complex fibril structure of MSA alpha-synuclein with CNS-11g at 6 hours
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-11-06
Authors: Lu, J., Sawaya, M.R., Ge, P., Boyer, D.R., Eisenberg, D.S.
PDB entry 9e8x: Complex fibril structure of MSA alpha-synuclein with CNS-11g at 10 hours
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-11-06
Authors: Lu, J., Sawaya, M.R., Ge, P., Boyer, D.R., Eisenberg, D.S.
PDB entry 9e8y: Complex fibril structure of MSA alpha-synuclein with CNS-11g at 15 hours
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-06
Authors: Lu, J., Sawaya, M.R., Ge, P., Boyer, D.R., Eisenberg, D.S.
PDB entry 9e8z: 4-component structure of retron Ec83
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-11-06
Authors: Rish, A.D., Wang, C., Fu, T.M.
PDB entry 9e90: Ec83 Retron PtuA/PtuB (2-1) complex bound to ATP
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-11-06
Authors: Rish, A.D., Wang, C., Fu, T.M.
PDB entry 9e91: Ec83 Retron PtuA Dimer bound to ATP
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-11-06
Authors: Rish, A.D., Wang, C., Fu, T.M.
PDB entry 9e92: Acanthamoeba Polyphaga Mimivirus R699
Classification: VIRAL PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-11-07
Authors: Buhlheller, C., Richards, S.J., Kim, J.S., Chen, T., Wu, J., Guo, H.
PDB entry 9e93: Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Classification: VIRAL PROTEIN/RNA
Source organism: Escherichia coli BL21(DE3); Homo sapiens; Human immunodeficiency virus 1; Pan troglodytes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-11-07
Authors: Matsuo, H., Skorupka, K.A.
PDB entry 9e94: Cryo-EM structure of human TWIK-2 at pH 7.5
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2024-11-07
Authors: Ma, Q., Kumar, A., Navratna, V., Mosalaganti, S.
PDB entry 9e96: WEEV CBA87 VLP in complex with human PCDH10-EC1
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2024-11-07
Authors: Raju, S., Diamond, M.S., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9e97: L-allo-threonine aldolase from Thermotoga maritima N308E-Y87A-R122G-P121D Mutant with a 2-(aminomethyl)pyridine PLP modification
Classification: LYASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2024-11-07
Authors: Wang, S., Jeffrey, P.D., Sorigue, D., Hyster, T.K.
PDB entry 9e99: Cryo-EM reconstruction of Escherichia phage N4 capsid
Classification: VIRAL PROTEIN
Source organism: Escherichia phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-11-07
Authors: Eruera, A., McJarrow-Keller, K., Hyun, J.K., Bostina, M.
PDB entry 9e9a: Solution structure of an uncharacterized protein containing a DUF1893 domain from Borrelia burgdorferi, a pathogen responsible for Lyme disease. Seattle Structural Genomics Center for Infectious Disease target BobuA.17726.a.A1.
Classification: UNKNOWN FUNCTION
Source organism: Borreliella burgdorferi B31
Experimental method: SOLUTION NMR
Deposited: 2024-11-07
Authors: Buchko, G.W., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9e9b: Crystal structure of L. monocytogenes MenD with Mg2+ and ThDP bound
Classification: TRANSFERASE
Source organism: Listeria monocytogenes 10403S
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-11-08
Authors: Klein, M., Given, F.M., Ho, N.A.T., Allison, T.M., Johnston, J.M.
PDB entry 9e9c: Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU1-L0R8F8-mt-ACP complex (without uL16m), State B1 (SAMC knock-out)
Classification: RIBOSOME
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2024-11-08
Authors: Singh, V., Rorbach, J., Freyer, C., Amunts, A., Wredenberg, A.