LiteFold/PDB huggingface dataset:
PDB entry 8x7c: Crystal structure of ZmHSL1A
Classification: OXIDOREDUCTASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.597 Å
Deposited: 2023-11-23
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 8x7d: Crystal structure of OsHSL1 L204F/F298L/I335F
Classification: OXIDOREDUCTASE
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-23
Authors: Lin, H.-Y., Dong, J., Yang, G.-F.
PDB entry 8x7e: Crystal Structure of the mutant Human ROR gamma Ligand Binding Domain With JTE-151
Classification: NUCLEAR PROTEIN/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-11-24
Authors: Akai, S., Nomura, A., Yamaguchi, K., Adachi, T.
PDB entry 8x7f: CryoEM structure of the trifunctional NAD biosynthesis/regulator protein NadR in complex with NAD
Classification: CELL INVASION
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-11-24
Authors: Jiang, W.X., Dong, X., Cheng, X.Q., Ma, L.X., Xing, Q.
PDB entry 8x7g: Crystal structure of the ternary complex of GID4-PROTAC(NEP108)-BRD4(BD1).
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-11-24
Authors: Dong, C., Yan, X., Li, Y.
PDB entry 8x7h: Crystal structure of the ternary complex of GID4-PROTAC(NEP162)-BRD4(BD1).
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-11-24
Authors: Dong, C., Yan, X., Li, Y.
PDB entry 8x7i: Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-11-24
Authors: Ai, H.S., Tong, Z.B., Deng, Z.H., Pan, M., Liu, L.
PDB entry 8x7j: Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-11-24
Authors: Ai, H.S., Tong, Z.B., Deng, Z.H., Pan, M., Liu, L.
PDB entry 8x7k: Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination)
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-11-24
Authors: Ai, H.S., Tong, Z.B., Deng, Z.H., Pan, M., Liu, L.
PDB entry 8x7l: EB-bound E46K alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-11-24
Authors: Liu, K.E., Tao, Y.Q., Li, D., Liu, C.
PDB entry 8x7m: CR-bound E46K alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-24
Authors: Liu, K.E., Tao, Y.Q., Li, D., Liu, C.
PDB entry 8x7n: Cell-cell adhesion Nanobody/Antigen Pair
Classification: ANTIMICROBIAL PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.67 Å
Deposited: 2023-11-24
Authors: Chen, P.-P., Hsia, K.-C., Ting, S.-Y., Chen, Y.-C.
PDB entry 8x7o: PiB-bound E46K mutanted alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-24
Authors: Liu, K.E., Tao, Y.Q., Li, D., Liu, C.
PDB entry 8x7p: CCA-bound E46K alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-24
Authors: Liu, K.E., Tao, Y.Q., Li, D., Liu, C.
PDB entry 8x7q: pFTAA-bound E46K alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-24
Authors: Liu, K.E., Tao, Y.Q., Li, D., Liu, C.
PDB entry 8x7r: C05-03-bound E46K alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-24
Authors: Liu, K.E., Tao, Y.Q., Li, D., Liu, C.
PDB entry 8x7s: Crystal structure of tlr0611
Classification: TRANSFERASE
Source organism: Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-11-25
Authors: Su, J.Y.
PDB entry 8x7t: MCM in the Apo state.
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-11-25
Authors: Ma, J., Yi, G., Ye, M., MacGregor-Chatwin, C., Sheng, Y., Lu, Y., Li, M., Gilbert, R.J.C., Zhang, P.
PDB entry 8x7u: MCM in complex with dsDNA in presence of ATP.
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2023-11-25
Authors: Ma, J., Yi, G., Ye, M., MacGregor-Chatwin, C., Sheng, Y., Lu, Y., Li, M., Gilbert, R.J.C., Zhang, P.
PDB entry 8x7v: Structure of human SCMC ternary complex
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-11-26
Authors: Chi, P., Ou, G., Liu, S., Lu, Y., Li, J.H., Li, J.L., Wang, X., Deng, D.
PDB entry 8x7w: Structure of dimeric human SCMC complex
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-11-26
Authors: Chi, P., Ou, G., Liu, S., Lu, Y., Li, J., Li, J., Wang, X., Deng, D.
PDB entry 8x7x: Crystal structure of SADS-CoV fusion core
Classification: VIRAL PROTEIN
Source organism: Coronaviridae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-11-26
Authors: Yan, L.
PDB entry 8x7z: Crystal structure of CCoV-HuPn-2018 fusion core
Classification: VIRAL PROTEIN
Source organism: Coronaviridae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-26
Authors: Yan, L., Yang, G.
PDB entry 8x80: Structure of leptin-LepR trimer with a small gap
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-11-27
Authors: Xie, Y.F., Gao, G.F.
PDB entry 8x81: Structure of leptin-LepR trimer with a large gap
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2023-11-27
Authors: Xie, Y.F., Gao, G.F.
PDB entry 8x82: The cryo-EM structure of insect gustatory receptor Gr43a I418A from Drosophila melanogaster
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-11-27
Authors: Ma, D., Guo, J.
PDB entry 8x83: The cryo-EM structure of insect gustatory receptor Gr43a I418A from Drosophila melanogaster in complex with fructose
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-11-27
Authors: Ma, D., Guo, J.
PDB entry 8x84: The cryo-EM structure of insect gustatory receptor Gr43a I418A from Drosophila melanogaster in complex with fructose and calcium
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-27
Authors: Ma, D., Guo, J.
PDB entry 8x85: Structure of leptin-LepR dimer
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-11-27
Authors: Xie, Y.F., Shang, G.J., Qi, J.X., Gao, G.F.
PDB entry 8x87: The Crystal Structure of HspBP1 from Biortus.
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-27
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.
PDB entry 8x88: The Crystal Structure of TNIK from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-11-27
Authors: Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.
PDB entry 8x89: Crystal Structure of Streptococcus pneumoniae fabG
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-11-27
Authors: Xu, K.M.
PDB entry 8x8a: Crystal structure of STBD1 LIR motif in complex with GABARAPL1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-11-27
Authors: Zhang, Y.C., Pan, L.F.
PDB entry 8x8f: Crystal structure of lipoxygenase from Enhygromyxa salina
Classification: OXIDOREDUCTASE
Source organism: Enhygromyxa salina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.796 Å
Deposited: 2023-11-27
Authors: Kim, J.W., Seo, P.W., Kim, J.S.
PDB entry 8x8g: Crystal structure of EndoSz mutant D234M, from Streptococcus equi subsp. Zooepidemicus Sz105, in complex with oligosaccharide G2S2-oxazoline
Classification: HYDROLASE
Source organism: Streptococcus equi subsp. zooepidemicus Sz105
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-11-27
Authors: Guan, H.H., Lin, C.C., Hsieh, Y.C., Chen, C.J.
PDB entry 8x8h: A carbohydrate binding domain of a putative pectate lyase
Classification: SUGAR BINDING PROTEIN
Source organism: Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-27
Authors: Liu, G.C., Chang, Y.G.
PDB entry 8x8i: The structure of AbBioc in complex with SAM cofactor
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-11-27
Authors: Zhang, W.Z., Gan, J., Feng, Y.J.
PDB entry 8x8j: The structure of AbBioc in complex with inhibitor sinefungin
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-11-27
Authors: Zhang, W.Z., Gan, J., Feng, Y.J.
PDB entry 8x8k: Crystal structure of STBD1 CBM20 domain in complex with maltotetraose
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-27
Authors: Zhang, Y.C., Pan, L.F.
PDB entry 8x8l: Cryo-EM structure of the cortistatin 17-bound Somatostatin receptor 5-Gi protein complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-27
Authors: Xu, H.E., You, C., Zhao, L., Li, J.
PDB entry 8x8m: Cryo-EM structure of a bacteriophage tail- spike protein against Klebsiella pneumoniae K64,ORF41(K64-ORF41)
Classification: LYASE
Source organism: Klebsiella phage SH-Kp 152410
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2023-11-27
Authors: Xie, Y., Huang, T., Zhang, Z., Tao, X.
PDB entry 8x8n: Cryo-EM structure of the octreotide-bound Somatostatin receptor 5-Gi protein complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-11-27
Authors: Xu, H.E., You, C., Zhao, L., Li, J.
PDB entry 8x8o: Cryo-EM structure of a bacteriophage tail- spike protein against Klebsiella pneumoniae K64,ORF41(K64-ORF41) in 5 mM EDTA
Classification: LYASE
Source organism: Klebsiella phage SH-Kp 152410
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-11-27
Authors: Xie, Y., Huang, T., Zhang, Z., Tao, X.
PDB entry 8x8p: Phenylethanol rhamnosyltransferase (CmGT3)
Classification: TRANSFERASE
Source organism: Callicarpa macrophylla
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-11-28
Authors: Wang, H.T., Wang, Z.L., Ye, M.
PDB entry 8x8q: Structure of enterovirus protease in complex host factor
Classification: CELL CYCLE
Source organism: Enterovirus A71; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-11-28
Authors: Gao, X., Cui, S.
PDB entry 8x8r: Structure of hemagglutinin from HN/4-10 H3N8 influenza virus G228 mutant complexed with human receptor analog LSTc
Classification: VIRAL PROTEIN
Source organism: unidentified influenza virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-11-28
Authors: Hao, T.J., Xie, Y.F., Chai, Y., Song, H., Gao, G.F.
PDB entry 8x8s: Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cypovirus 1; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2023-11-28
Authors: Kojima, M., Ueno, T., Abe, S., Hirata, K.
PDB entry 8x8t: NMR structure of p75NTR juxtamembrane domain in complex with RhoGDI N-terminal domain containing a phosphorylation-mimicking S34D mutation
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-11-28
Authors: Lin, Z., Li, Z.
PDB entry 8x8u: Crystal structure of F.occidentalis GABARAP
Classification: LIPID BINDING PROTEIN
Source organism: Frankliniella occidentalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-28
Authors: Zhang, S.Q., Luo, X., Wu, Z.L., Zhao, K.H., Li, X.Y.
PDB entry 8x8v: Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cypovirus 1; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-29
Authors: Kojima, M., Ueno, T., Abe, S., Hirata, K.
PDB entry 8x8x: Crystal structure of ROCK2 with GNS-2591 inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-11-29
Authors: Park, T.H., Bong, S.M., Lee, S.J., Lee, B.I.
PDB entry 8x8y: Crystal structure of ROCK2 with GNS-2660 inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-11-29
Authors: Park, T.H., Bong, S.M., Lee, S.J., Lee, B.I.
PDB entry 8x8z: Crystal structure of ROCK2 with GNS-2664 inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-11-29
Authors: Park, T.H., Bong, S.M., Lee, S.J., Lee, B.I.
PDB entry 8x90: P/Q type calcium channel
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-11-29
Authors: Yan, N., Li, Z., Cong, Y., Wu, T., Wang, T.
PDB entry 8x91: P/Q type calcium channel in complex with omega-conotoxin MVIIC
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-11-29
Authors: Yan, N., Li, Z., Cong, Y., Wu, T., Wang, T.
PDB entry 8x92: Crystal structure of ROCK2 with GNS-2666 inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-29
Authors: Park, T.H., Bong, S.M., Lee, S.J., Lee, B.I.
PDB entry 8x93: P/Q type calcium channel in complex with omega-Agatoxin IVA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-11-29
Authors: Yan, N., Li, Z., Cong, Y., Wu, T., Wang, T.
PDB entry 8x94: Structure of human TRPV1 in complex with antagonist --protein purified without CHS
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2023-11-29
Authors: Fan, J., Lei, X.
PDB entry 8x95: Cryo-EM structure of enterovirus A71 mature virion in complex with Fab h1A6.2
Classification: VIRUS
Source organism: Enterovirus A71
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-11-29
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 8x96: Cryo-EM structure of enterovirus A71 A-particle in complex with Fab h1A6.2
Classification: VIRUS
Source organism: Enterovirus A71
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-11-29
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 8x97: Cryo-EM structure of enterovirus A71 empty particle in complex with Fab h1A6.2
Classification: VIRUS
Source organism: Enterovirus A71
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-11-29
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S.
PDB entry 8x98: Cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab h1A6.2
Classification: VIRUS
Source organism: Coxsackievirus A16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2023-11-29
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 8x99: Cryo-EM structure of coxsackievirus A16 A-particle in complex with Fab h1A6.2
Classification: VIRUS
Source organism: Coxsackievirus A16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2023-11-29
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 8x9a: Cryo-EM structure of coxsackievirus A16 empty particle in complex with Fab h1A6.2
Classification: VIRUS
Source organism: Coxsackievirus A16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-11-29
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 8x9b: Cryo-EM structure of coxsackievirus A16 empty particle in complex with Fab h1A6.2 (local refinement)
Classification: VIRAL PROTEIN
Source organism: Coxsackievirus A16; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2023-11-29
Authors: Jiang, Y., Huang, Y., Zhu, R., Zheng, Q., Li, S., Xia, N.
PDB entry 8x9c: Class I terpene synthase: eudesmanediol synthase (apo-PeTS3)
Classification: LIGASE
Source organism: Penicillium expansum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-11-29
Authors: Huang, Z.Y., Li, W.L., Xu, J.H.
PDB entry 8x9d: Crystal structure of CO dehydrogenase mutant with increased affinity for electron mediators in high PEG concentration
Classification: ELECTRON TRANSPORT
Source organism: Carboxydothermus hydrogenoformans Z-2901
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-11-30
Authors: Lee, H.H., Heo, Y., Yoon, H.J., Kim, S.M., Kong, S.Y.
PDB entry 8x9e: Crystal structure of CO dehydrogenase mutant with increased affinity for electron mediators in low PEG concentration
Classification: ELECTRON TRANSPORT
Source organism: Carboxydothermus hydrogenoformans Z-2901
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-11-30
Authors: Lee, H.H., Heo, Y., Yoon, H.J., Kim, S.M., Kong, S.Y.
PDB entry 8x9f: Crystal structure of CO dehydrogenase mutant in complex with EV
Classification: ELECTRON TRANSPORT
Source organism: Carboxydothermus hydrogenoformans Z-2901
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-11-30
Authors: Lee, H.H., Heo, Y., Yoon, H.J., Kim, S.M., Kong, S.Y.
PDB entry 8x9g: Crystal structure of CO dehydrogenase mutant in complex with BV
Classification: ELECTRON TRANSPORT
Source organism: Carboxydothermus hydrogenoformans Z-2901
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-11-30
Authors: Lee, H.H., Heo, Y., Yoon, H.J., Kim, S.M., Kong, S.Y.
PDB entry 8x9h: Crystal structure of CO dehydrogenase mutant (F41C)
Classification: ELECTRON TRANSPORT
Source organism: Carboxydothermus hydrogenoformans Z-2901
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-30
Authors: Lee, H.H., Heo, Y., Yoon, H.J., Kim, S.M., Kong, S.Y.
PDB entry 8x9k: Cte_Branching,Ca,inactive
Classification: RNA, SPLICING
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-11-30
Authors: Ling, X.B., Ma, J.B.
PDB entry 8x9l: Cte-U537ins_Branch Intermediate,Ca,active
Classification: RNA, SPLICING
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-11-30
Authors: Ling, X.B., Ma, J.B.
PDB entry 8x9m: Cte-Branch Product, Mg, post
Classification: RNA, SPLICING
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-11-30
Authors: Ling, X.B., Ma, J.B.
PDB entry 8x9n: Cte_A695U_Branch Intermediate,Mg,inactive
Classification: RNA, SPLICING
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-11-30
Authors: Ling, X.B., Ma, J.B.
PDB entry 8x9o: Cte-U537ins-Branching,Ca,inactive
Classification: RNA, SPLICING
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-11-30
Authors: Ling, X.B., Ma, J.B.
PDB entry 8x9p: HURP (428-534)-alpha-tubulin-beta-tubulin complex
Classification: CELL CYCLE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2023-11-30
Authors: Chen, P.-P., Hsia, K.-C.
PDB entry 8x9q: Cte-A695U-branching,Mg,active
Classification: RNA, SPLICING
Source organism: Comamonas testosteroni KF-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-11-30
Authors: Ling, X.B., Ma, J.B.
PDB entry 8x9s: Identification, structure and agonist design of an androgen membrane receptor.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-12-01
Authors: Ping, Y.Q., Yang, Z.
PDB entry 8x9t: Identification, structure and agonist design of an androgen membrane receptor
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-12-01
Authors: Ping, Y.Q., Yang, Z.
PDB entry 8x9u: Identification, structure and agonist design of an androgen membrane receptor
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-12-01
Authors: Ping, Y.Q., Yang, Z.
PDB entry 8x9v: Crystal structure of Xanthomonas oryzae pv. oryzae NADH-quinone oxidoreductase subunits NuoE and NuoF
Classification: OXIDOREDUCTASE
Source organism: Xanthomonas oryzae pv. oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2023-12-01
Authors: Li, L., Ran, T., Wang, W., Zhang, F.
PDB entry 8x9w: portal vertex capsomer of the VZV C-Capsid
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-12-01
Authors: Nan, W., Lei, C., Jiangxi, W.
PDB entry 8x9x: C-hexon capsomer of the VZV C-Capsid
Classification: VIRUS
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-01
Authors: Nan, W., Lei, C., Xiangxi, W.
PDB entry 8x9y: E-hexon capsomer of the VZV C-Capsid
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-01
Authors: Nan, W., Lei, C., Xiangxi, W.
PDB entry 8x9z: P-hexon capsomer of the VZV C-Capsid
Classification: VIRUS
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-01
Authors: Nan, W., Lei, C., Xiangxi, W.
PDB entry 8xa0: penton capsomer of the VZV C-capsid
Classification: VIRUS
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-01
Authors: Nan, W., Lei, C., Xiangxi, W.
PDB entry 8xa1: Portal vertex capsomer of VZV B-capsid
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2023-12-01
Authors: Nan, W., Lei, C., Xiangxi, W.
PDB entry 8xa2: Penton capsomer of the VZV B-Capsid
Classification: VIRUS
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-01
Authors: Nan, W., Lei, C., Xiangxi, W.
PDB entry 8xa3: C-hexon capsomer of the VZV B-Capsid
Classification: VIRUS
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-01
Authors: Wang, N., Cao, L., Wang, X.
PDB entry 8xa4: A35 of MPXV in complex with mAb981
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Monkeypox virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-12-01
Authors: Li, Y.N., Shi, T.H., Yan, R.H.
PDB entry 8xa6: Cryo-EM structure of Bacillus RNAP and SPO1 gp33 complex
Classification: TRANSCRIPTION
Source organism: Bacillus; Bacillus phage SPO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-12-02
Authors: Chen, M., Jin, Q., Yuan, S., Liu, B.
PDB entry 8xa7: Cryo-EM structure of Bacillus subtilis RNAP,sigA and SPO1 gp33 complex
Classification: TRANSCRIPTION
Source organism: Bacillus; Bacillus phage SPO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-12-02
Authors: Chen, M., Jin, Q., Yuan, S., Liu, B.
PDB entry 8xa8: Cryo-EM structure of Bacillus RNAP and HelD complex
Classification: TRANSCRIPTION
Source organism: Bacillus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-12-02
Authors: Chen, M., Jin, Q., Yuan, S., Liu, B.
PDB entry 8xa9: Human MGME1 in complex with 5'-overhang DNA
Classification: HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-12-03
Authors: Wu, C.C., Mao, E.Y.C.
PDB entry 8xaa: Structure of NAP1 in complex with H2A-H2B
Classification: CHAPERONE
Source organism: Caenorhabditis elegans; Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-12-03
Authors: Xu, L.
PDB entry 8xab: Crystal structure of Ubl1 domain of nonstructural protein 3 of SARS-CoV-2
Classification: VIRUS
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-12-03
Authors: Li, Y., Ke, Z.
PDB entry 8xac: Crystal structure of amidase from Pseudonocardia acaciae
Classification: HYDROLASE
Source organism: Pseudonocardia acaciae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2023-12-03
Authors: Takenoya, M., Yajima, S.
PDB entry 8xag: Crystal structure of the chromodomain of Arabidopsis LHP1 in complex with histone H3.3K27me3 peptide
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-12-04
Authors: Liu, Y., Huang, Y.
PDB entry 8xai: Crystal structure of Protease CPAVM1 in Bacillus subtilis LjM2
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-12-04
Authors: Zhang, J., Wang, C.Y.
PDB entry 8xaj: Cryo-EM structure of OSCA1.2-liposome-inside-in open state
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-12-04
Authors: Zhang, Y., Han, Y.
PDB entry 8xak: Structure of Pif1-G4 complex
Classification: HYDROLASE/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-12-04
Authors: Hong, Z., Song, H.
PDB entry 8xal: Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2
Classification: VIRAL PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-04
Authors: Hsu, H.F., Wu, M.H., Chang, Y.C., Hsu, S.T.D.
PDB entry 8xam: Co-crystal structure of compound 7 in complex with MAT2A
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-12-04
Authors: Gao, F., Ding, X.
PDB entry 8xan: Major tail protein of SH-Ab15497
Classification: VIRAL PROTEIN
Source organism: Acinetobacter phage SH-Ab 15497
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-12-05
Authors: Lin, J., Zhao, S.W.
PDB entry 8xao: The thermostable and acid-tolerant DNA-binding protein
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus acidocaldarius DSM 639
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-12-05
Authors: Chen, C.Y., Huang, C.H.
PDB entry 8xap: Thermostable and acid-tolerant DNA-binding protein
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus acidocaldarius DSM 639
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-05
Authors: Chen, C.Y., Huang, C.H.
PDB entry 8xaq: The thermostable and acid-tolerant DNA-binding protein
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus acidocaldarius DSM 639
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-05
Authors: Chen, C.Y., Huang, C.H.
PDB entry 8xar: Structure-Based Design and Optimization of Methionine Adenosyltransferase 2A (MAT2A) Inhibitors with SAM and Compound 54
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2023-12-05
Authors: Zheng, J.Y., Zhang, G.P., Li, J.J., Tong, S.L.
PDB entry 8xas: Crystal structure of AtARR1-DBD in complex with a DNA fragment
Classification: DNA BINDING PROTEIN
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.346 Å
Deposited: 2023-12-05
Authors: Li, J.X., Zhou, C.M., zhang, P., Wang, J.W.
PDB entry 8xat: Crystal structure of AtARR1(RD-DBD)
Classification: DNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.205 Å
Deposited: 2023-12-05
Authors: Li, J.X., Zhou, C.M., Zhang, P., Wang, J.W.
PDB entry 8xau: Cryo-EM structure of HerA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-12-05
Authors: Wang, Y., Deng, Z.
PDB entry 8xav: Cryo-EM structure of an anti-phage defense complex
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-12-05
Authors: Wang, Y., Deng, Z.
PDB entry 8xaw: Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 1
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-12-05
Authors: An, Q., Deng, Z.
PDB entry 8xax: Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 2
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-12-05
Authors: An, Q., Deng, Z.
PDB entry 8xay: Cryo-EM structure of an anti-phage defense complex bound to ATPrS and DNA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-12-05
Authors: An, Q., Deng, Z.
PDB entry 8xb0: Structure-Based Design and Optimization of Methionine Adenosyltransferase 2A (MAT2A) Inhibitors with SAM and Compound 292
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2023-12-05
Authors: Tong, S.L., Zhang, G.P.
PDB entry 8xb1: Crystal structure of FLT3 in complex with a Pyrazinamide Macrocycle derivative
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-12-05
Authors: Guo, M., Chen, Y.
PDB entry 8xb2: Structure of radafaxine-bound state of the human Norepinephrine Transporter
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-12-05
Authors: Wu, J.X., Ji, W.M.
PDB entry 8xb3: Structural mechanism of substrate binding and inhibition of the human Norepinephrine Transporter
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-05
Authors: Ji, W.M., Wu, J.X.
PDB entry 8xb4: Structure of apo state of the human Norepinephrine Transporter
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-12-05
Authors: Wu, J.X., Ji, W.M.
PDB entry 8xb5: Portal protein of SH-Ab15497
Classification: VIRAL PROTEIN
Source organism: Acinetobacter phage SH-Ab 15497
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-05
Authors: Lin, J., Zhao, S.W.
PDB entry 8xb6: Portal-vertex of SH-Ab15497 in C1 symmetry
Classification: VIRAL PROTEIN
Source organism: Acinetobacter phage SH-Ab 15497
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-05
Authors: Lin, J., Zhao, S.W.
PDB entry 8xb7: HosA transcriptional regulator from enteropathogenic Escherichia coli O127:H6 (strain E2348/69) bound with 4-hydroxy benzoic acid - Conformation II at 2.6 angstrom resolution
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O127:H6 str. E2348/69
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-12-06
Authors: Goswami, A., Raju, R., Kasarla, M.
PDB entry 8xb8: The structure of ASFV A137R
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-06
Authors: Li, C., Song, H., Gao, G.F.
PDB entry 8xb9: The Crystal Structure of polo-box domain of PLK1 from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-12-06
Authors: Wang, F., Cheng, W., Yuan, Z., Meng, Q., Zhang, B.
PDB entry 8xba: The substrate binding protein of an ABC transporter in complex with beta-1,4-xylobiose
Classification: TRANSPORT PROTEIN
Source organism: Vibrio sp. EA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-12-06
Authors: Zhao, F., Sun, H.N., Chen, X.L., Zhang, Y.Z.
PDB entry 8xbb: The substrate binding protein of an ABC transporter in complex with beta-1,3-xylobiose
Classification: TRANSPORT PROTEIN
Source organism: Vibrio sp. EA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-12-06
Authors: Zhao, F., Sun, H.N., Chen, X.L., Zhang, Y.Z.
PDB entry 8xbc: The substrate binding protein of an ABC transporter in complex with beta-1,3-xylotriose
Classification: TRANSPORT PROTEIN
Source organism: Vibrio sp. EA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-12-06
Authors: Zhao, F., Sun, H.N., Chen, X.L., Zhang, Y.Z.
PDB entry 8xbd: GH18 family chitinase from cold seep metagenome
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-06
Authors: Yang, J.
PDB entry 8xbe: Human GPR34 -Gi complex bound to S3E-LysoPS
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-06
Authors: Kawahara, R., Shihoya, W., Nureki, O.
PDB entry 8xbf: Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with antibody O5C2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-06
Authors: Hsu, H.F., Wu, M.H., Chang, Y.C., Hsu, S.T.D.
PDB entry 8xbg: Human GPR34 -Gi complex bound to S3E-LysoPS, receptor focused
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-12-06
Authors: Kawahara, R., Shihoya, W., Nureki, O.
PDB entry 8xbh: Human GPR34 -Gi complex bound to M1
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-12-06
Authors: Kawahara, R., Shihoya, W., Nureki, O.
PDB entry 8xbi: Human GPR34 -Gi complex bound to M1, receptor focused
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-12-06
Authors: Kawahara, R., Shihoya, W., Nureki, O.
PDB entry 8xbj: The X-ray structure of F46C myoglobin with a covalently linked Ni-complex
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-12-06
Authors: Lin, Y.W., Yuan, H.
PDB entry 8xbk: Crystal Structure of Human Liver Fructose-1,6-bisphosphatase Complexed with a Covalent Inhibitor
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2023-12-06
Authors: Cao, H., Zhang, X., Ren, Y., Wan, J.
PDB entry 8xbl: Cryo-EM structure of colibactin assembly line polyketide synthase ClbC (apo state)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-12-06
Authors: Kim, J., Kim, M., Kang, J.Y.
PDB entry 8xbm: Structure of Cx43/GJA1 gap junction intercellular channel in complex with diC8-PIP2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-06
Authors: Lee, H.J., Oh, J.S., Cha, H.J., Lee, C.W., Jang, H.S.
PDB entry 8xbn: Crystal structure of Arabidopsis N-amino acetyltransferase NATA1 bound to CoA and HEPES
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-12-06
Authors: Hameed, U.F.S., Arold, S.T.
PDB entry 8xbo: Crystal structure of activity improved formolase variant K6
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2023-12-06
Authors: Wei, H.L., Cheng, Y.Y., Tang, Z.J., Tan, Z.J., Liu, W.D., Zhu, L.L.
PDB entry 8xbp: Crystal structure of AtNATA1 bound to Acetyl CoA
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-12-06
Authors: Hameed, U.F.S., Arold, S.T.
PDB entry 8xbq: Crystal structure of activity improved formolase variant K1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-12-06
Authors: Wei, H.L., Cheng, Y.Y., Tang, Z.J., Tan, Z.J., Liu, W.D., Zhu, L.L.
PDB entry 8xbr: Crystal structure of activity improved formolase variant K3
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-12-06
Authors: Wei, H.L., Cheng, Y.Y., Tang, Z.J., Tan, Z.J., Liu, W.D., Zhu, L.L.
PDB entry 8xbs: C. elegans apo-SID1 structure
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Deposited: 2023-12-07
Authors: Gong, D.S.
PDB entry 8xbt: The cryo-EM structure of the octameric RAD51 ring bound to the nucleosome with the linker DNA binding
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2023-12-07
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8xbu: The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome with the linker DNA binding
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.24 Å
Deposited: 2023-12-07
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8xbv: The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the sticky end of the nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.61 Å
Deposited: 2023-12-07
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8xbw: The cryo-EM structure of the RAD51 N-terminal lobe domain bound to the histone H4 tail of the nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-12-07
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8xbx: The cryo-EM structure of the RAD51 L2 loop bound to the linker DNA with the blunt end of the nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.36 Å
Deposited: 2023-12-07
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8xby: The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the blunt end of the nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.8 Å
Deposited: 2023-12-07
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8xc1: C. elegans SID1 in complex with dsRNA
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Deposited: 2023-12-07
Authors: Gong, D.S.
PDB entry 8xc2: The X-ray structure of F46C myoglobin with a covalently linked Ni-complex
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-12-07
Authors: Lin, Y.W., Yuan, H.
PDB entry 8xc3: Crystal structure of ZmHSL1A-MBQ complex
Classification: OXIDOREDUCTASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-12-07
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8xc4: Nipah virus attachment glycoprotein head domain in complex with a broadly neutralizing antibody 1E5
Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Henipavirus nipahense; Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2023-12-08
Authors: Fan, P.F., Yu, C.M., Chen, W.
PDB entry 8xc5: Cryo-EM structure of GP2 fibrils derived from human pancreas
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-12-08
Authors: Cao, Q., Han, J.
PDB entry 8xc6: Crystal structure of large stokes shift red fluorescent protein tKeima
Classification: FLUORESCENT PROTEIN
Source organism: Montipora sp. 20
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-12-08
Authors: Nam, K.H.
PDB entry 8xc7: Structure of LL-D49194-alpha-1 covalently bound to guanosine-2'-fluorinated d(AACCGGTT)2
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-12-08
Authors: Gao, R.Q., Tang, G.L., Cao, C.
PDB entry 8xc8: beta-1,4-galacosyltransferase
Classification: TRANSFERASE
Source organism: Aggregatibacter actinomycetemcomitans NUM4039
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-12-08
Authors: Luo, G., Huang, Z., Chen, J., Hou, X., Zhu, Y., Ni, D., Xu, W., Zhang, W., Rao, Y., Mu, W.
PDB entry 8xc9: Amylase A in complex with acarbose
Classification: HYDROLASE
Source organism: Alkalimonas delamerensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-12-08
Authors: Zhao, F., Xu, T.T.
PDB entry 8xca: Cryo-EM structure of Cas12o1, crRNA and target DNA complex
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: unclassified sequences; unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-08
Authors: Zhang, X.
PDB entry 8xcb: Cocrystal structure of p53 in complex of B20
Classification: ANTITUMOR PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-12-08
Authors: Wang, Z., Shujun, X., Yigang, T., Derun, Z., Jiaqi, W., Kai, K., Lu, M.
PDB entry 8xcc: Cryo-EM structure of Cas12o1 (E100K), crRNA and target DNA complex
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: unclassified sequences
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-08
Authors: Zhang, X.
PDB entry 8xcd: Macaca fascicularis NTCP in complex with YN69083 Fab
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Macaca fascicularis; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-12-08
Authors: Park, J.H., Ishimoto, N., Park, S.Y.
PDB entry 8xce: cocrystal structure of p53 in complex of B23
Classification: ANTITUMOR PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-08
Authors: Wang, Z., Shujun, X., Yigang, T., Derun, Z., Jiaqi, W., Kai, K., Lu, M.
PDB entry 8xcg: Tail tip complex of bacteriophage lambda in the open state
Classification: VIRUS
Source organism: Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-12-09
Authors: Ge, X.F., Wang, J.W.
PDB entry 8xch: SARS-CoV-2 Replication-Transcription Complex has a dimer-of-dimeric architecture (ddRTC) in pre-capping initiation.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-09
Authors: Yan, L., Lou, Z.
PDB entry 8xci: Open state of central tail fiber of bacteriophage lambda upon binding to LamB
Classification: VIRUS
Source organism: Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2023-12-09
Authors: Ge, X.F., Wang, J.W.
PDB entry 8xcj: Open State of central tail fiber of bacteriophage lambda upon binding to LamB (gpJ713-LamB complex)
Classification: VIRUS
Source organism: Escherichia phage Lambda; Shigella sonnei
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-12-09
Authors: Ge, X.F., Wang, J.W.
PDB entry 8xck: Closed state of central tail fiber of bacteriophage lambda
Classification: VIRUS
Source organism: Escherichia coli; Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-12-09
Authors: Ge, X.F., Wang, J.W.
PDB entry 8xcl: Character of TseP: a dual functional effector of type VI secretion system
Classification: HYDROLASE
Source organism: Aeromonas dhakensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-12-09
Authors: Qin, W.M., Zhao, T., Dong, T., Wang, Z.H.
PDB entry 8xcm: Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1146Q
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter japonicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-12-09
Authors: Fukawa, E., Miyata, T., Makino, F., Adachi, T., Suzuki, Y., Tanaka, H., Namba, K., Sowa, K., Kitazumi, Y., Shirai, O.