LiteFold/PDB huggingface dataset:
PDB entry 8cmb: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S486-505
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-02-19
Authors: MacLachlan, B.J., Mason, G.H., Godkin, A.J., Rizkallah, P.J.
PDB entry 8cmc: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S511-530
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-02-19
Authors: MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.
PDB entry 8cmd: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S761-775
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-02-19
Authors: MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.
PDB entry 8cme: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Membrane peptide M176-190
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2023-02-19
Authors: MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.
PDB entry 8cmf: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 nsp3 epitope (orf1ab)1350-1364
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-19
Authors: MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.
PDB entry 8cmg: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 nsp14 peptide (orf1ab)6420-6434
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-02-19
Authors: MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.
PDB entry 8cmh: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Omicron (BA.1) Spike peptide S486-505
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-02-19
Authors: MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.
PDB entry 8cmi: Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Omicron (BA.1) Spike peptide S761-775
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-02-19
Authors: MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.
PDB entry 8cmj: Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2023-02-20
Authors: Milicevic, N., Jenner, L., Myasnikov, A., Yusupov, M., Yusupova, G.
PDB entry 8cmk: Transportin-3 TNPO3 in complex with RSY region of CIRBP
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.945 Å
Deposited: 2023-02-20
Authors: Zhou, Q., Sagmeister, T., Pavkov-Keller, T., Madl, T.
PDB entry 8cml: Cryo-EM structure of complement C5 in complex with nanobodies UNbC5-1 and UNbC5-2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-20
Authors: De la O Becerra, K.I., Gros, P.
PDB entry 8cmm: Re-pairing DNA - binding of a ruthenium phi complex to a double mismatch
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 2023-02-20
Authors: Prieto Otoya, T.D., Cardin, C.J., McQuaid, K.M.
PDB entry 8cmn: 18mer DNA mimic Foldamer with an aliphatic linker in complex with Sac7d wild protein
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus acidocaldarius DSM 639; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-02-20
Authors: Deepak, D., Corvaglia, V., Wu, J., Huc, I.
PDB entry 8cmo: Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp.
Classification: PHOTOSYNTHESIS
Source organism: Coelastrella
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-02-20
Authors: Fadeeva, M., Klaiman, D., Nelson, N., Khozin-Goldberg, I., Zorin, B.
PDB entry 8cmp: DNA-binding bacterial histone protein HBB from Bdellovibrio bacteriovorus
Classification: DNA BINDING PROTEIN
Source organism: Bdellovibrio bacteriovorus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.06 Å
Deposited: 2023-02-20
Authors: Hu, Y., Joiner, J.D., Albrecht, R., Hartmann, M.D.
PDB entry 8cmq: Crystal structure of an 8-repeat consensus TPR superhelix with Tb
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.782 Å
Deposited: 2023-02-20
Authors: Liutkus, M., Rojas, A.L., Cortajarena, A.L.
PDB entry 8cmr: Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin
Classification: HYDROLASE
Source organism: Homo sapiens; Simkania negevensis Z
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2023-02-21
Authors: Uthoff, M., Hermanns, T., Boll, V., Hofmann, K., Baumann, U.
PDB entry 8cms: OTUB2 in covalent complex with LN5P45
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-02-21
Authors: Gan, J., de Vries, J.
PDB entry 8cmt: Structure of the plasma coagulation Factor XIII A2B2 heterotetrameric complex.
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-02-21
Authors: Singh, S., Ugurlar, D., Hagelueken, G., Geyer, M., Biswas, A.
PDB entry 8cmu: High resolution structure of the coagulation Factor XIII A2B2 heterotetramer complex.
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2023-02-21
Authors: Singh, S., Urgular, D., Hagelueken, G., Geyer, M., Biswas, A.
PDB entry 8cmv: Engineered PETase enzyme from LCC - C09 mutant
Classification: HYDROLASE
Source organism: unidentified prokaryotic organism
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-02-21
Authors: Bhattacharya, S., Estiri, H., Castagna, R., Parisini, E.
PDB entry 8cmw: A225L variant of the CODH/ACS complex of C. hydrogenoformans
Classification: OXIDOREDUCTASE
Source organism: Carboxydothermus hydrogenoformans Z-2901
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-02-21
Authors: Ruickoldt, J., Jeoung, J., Lennartz, F., Dobbek, H.
PDB entry 8cmx: Structure of sphingosine-1-phosphate lyase (SPL) from Aspergillus fumigatus
Classification: LYASE
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2023-02-21
Authors: Catalano, F., Pampalone, G.
PDB entry 8cmy: Structure of the Cyanobium sp. PCC 7001 determined with C1 symmetry
Classification: PHOTOSYNTHESIS
Source organism: Cyanobium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2023-02-21
Authors: Evans, S.L., Bergeron, J.R.C.
PDB entry 8cmz: Crystal structure of CREBBP-R1446C histone acetyltransferase domain in complex with Coenzyme A
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.252 Å
Deposited: 2023-02-21
Authors: Mechaly, A.E., Zhang, W., Haouz, A., Green, M., Rodrigues-Lima, F.
PDB entry 8cn0: Crystal structure of CREBBP-Y1482N histone acetyltransferase domain in complex with Coenzyme A
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-02-21
Authors: Mechaly, A.E., Zhang, W., Haouz, A., Green, M., Rodrigues-Lima, F.
PDB entry 8cn1: hDLG1-PDZ1 in complex with a TAX1 peptide from HTLV-1
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-02-21
Authors: Maseko, S., Sogues, A., Volkov, A., Remaut, H., Twizere, J.C.
PDB entry 8cn2: Pa.FabF-C164Q in complex with N-isobutyl-1H-pyrazole-3-carboxamide
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-02-21
Authors: Georgiou, C., Brenk, R.
PDB entry 8cn3: hDLG1-PDZ2 in complex with a TAX1 peptide from HTLV-1
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2023-02-21
Authors: Maseko, S., Sogues, A., Volkov, A., Remaut, H., Twizere, J.C.
PDB entry 8cn4: Pa.FabF-C164Q in complex with 5-acetamido-2-chlorobenzoic acid
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2023-02-21
Authors: Georgiou, C., Brenk, R.
PDB entry 8cn5: Pa.FabF-C164Q in complex with propan-2-yl 1~{H}-pyrazole-3-carboxylate
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-02-22
Authors: Georgiou, C., Brenk, R.
PDB entry 8cn6: CD59 in complex with CP-06 peptide
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-02-22
Authors: Bickel, J., Ahmed, A., Morgan, M., Horrell, S., El Omari, K., Couves, E.C., Bubeck, D., Tate, E.
PDB entry 8cn7: Pa.FabF-C164Q in complex with platencin
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-22
Authors: Georgiou, C., Brenk, R.
PDB entry 8cn8: apo Pseudomonas aeruginosa FabF C164A mutant
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-22
Authors: Georgiou, C., Brenk, R., Espeland, L.O.
PDB entry 8cn9: Factor VII binding Fab of the bispecific antibody HMB-001 in complex with Factor VII
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-02-22
Authors: Schluckebier, G., Johansson, E.
PDB entry 8cna: Crystal structure of CREBBP-R1446C histone acetyltransferase domain in complex with a bisubstrate inhibitor, Lys-CoA
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.463 Å
Deposited: 2023-02-22
Authors: Mechaly, A.E., Zhang, W., Haouz, A., Green, M., Rodrigues-Lima, F.
PDB entry 8cnb: Crystal structure of CREBBP-Y1503C histone acetyltransferase domain in complex with Coenzyme A
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.986 Å
Deposited: 2023-02-22
Authors: Mechaly, A.E., Zhang, W., Haouz, A., Green, M., Rodrigues-Lima, F.
PDB entry 8cnc: Structure of compound 1 bound KMT9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-02-22
Authors: Sheng, W.
PDB entry 8cnd: Crystal structure of CREBBP-Y1482N histone acetyltransferase domain in complex with a bisubstrate inhibitor, Lys-CoA
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.972 Å
Deposited: 2023-02-22
Authors: Mechaly, A.E., Zhang, W., Haouz, A., Green, M., Rodrigues-Lima, F.
PDB entry 8cne: Pa.FabF-C164A in complex with N-(propan-2-yl)-1H-pyrazole-3-carboxamide
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-02-22
Authors: Georgiou, C., Brenk, R., Espeland, L.O.
PDB entry 8cnf: Human Aldose Reductase Mutant L300G in Complex with a Ligand with an IDD Structure ({5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2023-02-22
Authors: Klee, L.-S., Heine, A., Klebe, G.
PDB entry 8cng: Pa.FabF-C164Q in complex with ~{N}-cyclopentyl-3-methyl-1~{H}-pyrazole-5-carboxamide
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-22
Authors: Georgiou, C., Brenk, R.
PDB entry 8cnh: Crystal structure of human soluble adenylyl cyclase (sAC) in complex with inhibitor TDI-10512
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-23
Authors: Steegborn, C.
PDB entry 8cni: PHT1 in the outward facing conformation, bound to Sb27
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-02-23
Authors: Custodio, T., Killer, M., Loew, C.
PDB entry 8cnj: HRas(1-166) in complex with GDP and BeF3-
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-02-23
Authors: Baumann, P., Jin, Y.
PDB entry 8cnk: Cryo-EM structure of retinal-free proteoopsin bound to decanoate
Classification: PROTON TRANSPORT
Source organism: uncultured Gammaproteobacteria bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-02-23
Authors: Hirschi, S., Lemmin, T., Fotiadis, D.
PDB entry 8cnl: Lymphocytic choriomeningitis virus 3'-5' exonuclease domain of nucleoprotein
Classification: VIRAL PROTEIN
Source organism: Arenavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-02-23
Authors: Spiliopoulou, M., Papageorgiou, N., Ferron, F.
PDB entry 8cnm: Human Sirt6 in complex with the inhibitor S6020 and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-02-23
Authors: You, W., Steegborn, C.
PDB entry 8cnn: BeF3 Phospho-HRas GSA complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-02-23
Authors: Baumann, P., Jin, Y.
PDB entry 8cno: Improved complex structure of human Sirtuin 6 with its inhibitor cis-resveratrol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-23
Authors: You, W., Steegborn, C.
PDB entry 8cnp: Human Aldose Reductase Mutant L300G in Complex with a Ligand with an IDD Structure (3-({[2-(carboxymethoxy)-4-fluorobenzoyl]amino}methyl)benzoic acid)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.94 Å
Deposited: 2023-02-24
Authors: Klee, L.-S., Heine, A., Klebe, G.
PDB entry 8cnr: Hybrid Cluster Protein from the thermophilic methanogen Methanothermococcus thermolithotrophicus as isolated in a reduced state at 1.45-A resolution
Classification: OXIDOREDUCTASE
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-02-24
Authors: Lemaire, O.N., Wagner, T.
PDB entry 8cns: The Hybrid Cluster Protein from the thermophilic methanogen Methanothermococcus thermolithotrophicus in a mixed redox state after soaking with hydroxylamine, at 1.36-A resolution.
Classification: OXIDOREDUCTASE
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-02-24
Authors: Lemaire, O.N., Wagner, T.
PDB entry 8cnt: Structure of the DEAH-box helicase Prp16 in complex with ADP
Classification: HYDROLASE
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-02-24
Authors: Garbers, T.B., Neumann, P., Ficner, R.
PDB entry 8cnx: Structure of Enterovirus D68 3C protease
Classification: ANTIVIRAL PROTEIN
Source organism: Enterovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-02-24
Authors: Lithgo, R.M., Fairhead, M., Koekemoer, L., Aschenbrenner, J.C., Balcomb, B.H., Godoy, A.S., Marples, P.G., Ni, X., Tomlinson, C.W.E., Wild, C., Fearon, D., Walsh, M.A., von Delft, F.
PDB entry 8cny: Structure of Enterovirus A71 3C protease
Classification: ANTIVIRAL PROTEIN
Source organism: Enterovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-02-24
Authors: Lithgo, R.M., Fairhead, M., Koekemoer, L., Aschenbrenner, J.C., Balcomb, B.H., Godoy, A.S., Marples, P.G., Ni, X., Tomlinson, C.W.E., Wild, C., Fearon, D., Walsh, M.A., von Delft, F.
PDB entry 8cnz: mmLarE-[4Fe-4S] phased by Fe-SAD
Classification: TRANSFERASE
Source organism: Methanococcus maripaludis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2023-02-24
Authors: Pecqueur, L., Zecchin, P., Golinelli-Pimpaneau, B.
PDB entry 8co0: Three dimensional structure of human carbonic anhydrase IX in complex with sulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-02-25
Authors: Leitans, J., Tars, K.
PDB entry 8co1: Type II Secretion System
Classification: MEMBRANE PROTEIN
Source organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2023-02-26
Authors: Farci, D., Piano, D.
PDB entry 8co2: YdaS N-terminal domain from prophage CP-933P in E. coli O157:H7
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O157
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63881 Å
Deposited: 2023-02-26
Authors: Prolic-Kalinsek, M., Loris, R.
PDB entry 8co3: Three dimensional structure of human carbonic anhydrase XII in complex with sulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-02-26
Authors: Leitans, J., Dvinskis, E., Tars, K.
PDB entry 8co4: Crystal structure of apo S-nitrosoglutathione reductase from Arabidopsis thalina
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-02-27
Authors: Fermani, S., Fanti, S., Carloni, G., Rossi, J., Falini, G., Zaffagnini, M.
PDB entry 8co5: The surface-engineered photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form with parallel dimer formation
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2023-02-27
Authors: Schmidt, A., Sauthof, L., Krauss, N., Scheerer, P.
PDB entry 8co6: Subtomogram average of Immature Rotavirus TLP penton
Classification: VIRAL PROTEIN
Source organism: Rotavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2023-02-27
Authors: Shah, P.N.M., Stuart, D.I.
PDB entry 8co7: Crystal structure of human soluble adenylyl cyclase (sAC) in complex with inhibitor TDI-09066
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-02-27
Authors: Steegborn, C.
PDB entry 8co8: Structure of West Nile Virus NS2B-NS3 protease
Classification: VIRAL PROTEIN
Source organism: West Nile virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-02-27
Authors: Fairhead, M., Godoy, A.S., Koekemoer, L., Balcomb, B.H., Lithgo, R.M., Aschenbrenner, J.C., Marples, P.G., Ni, X., Tomlinson, C.W.E., Wild, C., Fearon, D., Walsh, M.A., von Delft, F.
PDB entry 8coa: in situ Subtomogram average of Immature Rotavirus TLP spike
Classification: VIRAL PROTEIN
Source organism: Rotavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-02-27
Authors: Shah, P.N.M., Stuart, D.I.
PDB entry 8cob: Crystal structure of human PCNA in complex with ERCC6L2 PIP box peptide
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-02-27
Authors: Ariza, A.
PDB entry 8cod: Crystal structure of S-adenosyl-L-homocysteine hydrolase from Mus musculus in complex with inosine
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-02-27
Authors: Saleem-Batcha, R., Popadic, D., Koeppl, L.H., Andexer, J.N.
PDB entry 8coe: complement C5 in complex with the LCP0195 nanobody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 4.2 Å
Deposited: 2023-02-28
Authors: Andersen, G.R., Pedersen, D.V.
PDB entry 8cog: Human arginylated beta-actin
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.499 Å
Deposited: 2023-02-28
Authors: Pinto, C.S., Bakker, S.E., Suchenko, A., Hussain, H., Hatano, T., Sampath, K., Chinthalapudi, K., Mishima, M., Balasubramanian, M.
PDB entry 8coh: Structure of the complement C5 specific nanobody TPP-3444
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-02-28
Authors: Pedersen, D.V., Andersen, G.R.
PDB entry 8coi: Human adenovirus-derived synthetic ADDobody binder
Classification: VIRAL PROTEIN
Source organism: Human adenovirus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2023-02-28
Authors: Buzas, D., Toelzer, C., Gupta, K., Berger-Schaffitzel, C., Berger, I.
PDB entry 8coj: Crystal structure of human soluble adenylyl cyclase catalytic domain in complex with the inhibitor TDI-10228
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-28
Authors: Steegborn, C., Fushimi, M.
PDB entry 8cok: Structural analysis of ING3 protein and its binding to histone H3
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2023-02-28
Authors: Ferreras-Gutierrez, M., Medrano, F.J., Blanco, F.J.
PDB entry 8col: Crystal structure of Rhizobium etli constitutive L-asparaginase ReAIV (orthorombic form R4oP-2)
Classification: HYDROLASE
Source organism: Rhizobium etli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-28
Authors: Loch, J.I., Worsztynowicz, P., Sliwiak, J., Imioloczyk, B., Grzechowiak, M., Gilski, M., Jaskolski, M.
PDB entry 8com: Structure of the Nucleosome Core Particle from Trypanosoma brucei
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; Trypanosoma brucei brucei TREU927
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-28
Authors: Burdett, H., Deak, G., Wilson, M.D.
PDB entry 8con: Crystal structure of alcohol dehydrogenase from Arabidopsis thaliana in complex with NADH
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-02-28
Authors: Fermani, S., Fanti, S., Carloni, G., Falini, G., Meloni, M., Zaffagnini, M.
PDB entry 8coo: Solution structure of Zipcode binding protein 1 (ZBP1) KH3(DD)KH4 domains in complex with N6-Methyladenosine containing RNA
Classification: RNA BINDING PROTEIN
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2023-02-28
Authors: Nicastro, G., Abis, G., Taylor, I.A., Ramos, A.
PDB entry 8cop: Mycobacterium tuberculosis dihydrofolate reductase in complex with N-(4-(2,6-diamino-5-(cyclopropylethynyl)pyrimidin-4-yl)phenyl)methanesulfonamide
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-28
Authors: Kirkman, T.J., Dias, M.V.B.
PDB entry 8coq: Mycobacterium tuberculosis dihydrofolate reductase in complex with 5-(cyclopropylethynyl)-6-(2-methoxyphenyl)pyrimidine-2,4-diamine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-02-28
Authors: Kirkman, T.J., Dias, M.V.B.
PDB entry 8cot: Complex of human soluble adenylyl cyclase 10 catalytic core with inhibitor TDI-10962
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-28
Authors: Steegborn, C., Fushimi, M.
PDB entry 8cou: Pa.FabF-C164Q in complex with 3-acetamido-4-methoxybenzoic acid
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-02-28
Authors: Georgiou, C., Brenk, R.
PDB entry 8cov: Pa.FabF-C164Q in complex with 6-chloro-2-methyl-1H-indole-5-carboxylic acid
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-28
Authors: Georgiou, C., Brenk, R., Espeland, L.O.
PDB entry 8cow: Mycobacterium tuberculosis dihydrofolate reductase in complex with 5-(cyclopropylethynyl)-6-(2-fluorophenyl)pyrimidine-2,4-diamine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-03-01
Authors: Kirkman, T.J., Dias, M.V.B., Coyne, A.G.
PDB entry 8cox: Mycobacterium tuberculosis dihydrofolate reductase in complex with N-(2-(2,6-diamino-5-(cyclopropylethynyl)pyrimidin-4-yl)phenyl)methanesulfonamide
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-03-01
Authors: Kirkman, T.J., Dias, M.V.B., Coyne, A.G.
PDB entry 8coy: Structure of the catalytic domain of P. vivax Sub1 (triclinic crystal form) in complex with inhibitor
Classification: HYDROLASE
Source organism: Plasmodium vivax; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.507 Å
Deposited: 2023-03-01
Authors: Martinez, M., Bouillon, A., Batista, F., Alzari, P.M., Barale, J.C., Haouz, A.
PDB entry 8coz: Structure of the catalytic domain of P. vivax Sub1 (triclinic crystal form)
Classification: HYDROLASE
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 1.438 Å
Deposited: 2023-03-01
Authors: Martinez, M., Bouillon, A., Batista, F., Alzari, P.M., Barale, J.C., Haouz, A.
PDB entry 8cp0: Structure of the catalytic domain of P. vivax Sub1 (trigonal crystal form)
Classification: HYDROLASE
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 3.251 Å
Deposited: 2023-03-01
Authors: Martinez, M., Bouillon, A., Batista, F., Alzari, P.M., Barale, J.C., Haouz, A.
PDB entry 8cp2: Structure of Aspartate-N-hydroxylase (FzmM)from Streptomyces sp. V2: complex with NADPH and L-aspartate
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. V2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-03-01
Authors: Rotilio, L., Mattevi, A.
PDB entry 8cp3: Apo-LarE in complex with AMP-PNP
Classification: TRANSFERASE
Source organism: Methanococcus maripaludis S2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-03-01
Authors: Zecchin, P., Pecqueur, L., Golinelli-Pimpaneau, B.
PDB entry 8cp4: [4Fe-4S] cluster containing LarE in complex with AMP
Classification: TRANSFERASE
Source organism: Methanococcus maripaludis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2023-03-01
Authors: Zecchin, P., Pecqueur, L., Golinelli-Pimpaneau, B.
PDB entry 8cp5: Structure of Aspartate-N-hydroxylase (FzmM)from Streptomyces sp. V2: complex with NADPH and Sulphate
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. V2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-03-01
Authors: Rotilio, L., Mattevi, A.
PDB entry 8cp6: Type six secretion system exported effector 5 (Tse5)
Classification: TOXIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2023-03-01
Authors: Gonzalez-Magana, A., Tascon, I., Ubarretxena-Belandia, I., Albesa-Jove, D.
PDB entry 8cp7: Structure of the disulfide-locked substrate binding protein HiSiaP.
Classification: SUGAR BINDING PROTEIN
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-03-02
Authors: Kim, Y., Peter, M.F., Hagelueken, G.
PDB entry 8cp8: Crystal structure of an 8-repeat consensus TPR superhelix with Lead
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-03-02
Authors: Liutkus, M., Rojas, A.L., Cortajarena, A.L.
PDB entry 8cp9: 1,6-anhydro-n-actetylmuramic acid kinase (AnmK)in complex with non-hydrolyzable AMPPNP.
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-03-02
Authors: Jimenez-Faraco, E., Hermoso, J.A.
PDB entry 8cpa: COMPARISON OF THE STRUCTURES OF THREE CARBOXYPEPTIDASE A-PHOSPHONATE COMPLEXES DETERMINED BY X-RAY CRYSTALLOGRAPHY
Classification: HYDROLASE(C-TERMINAL PEPTIDASE)
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1991-05-21
Authors: Kim, H., Lipscomb, W.N.
PDB entry 8cpb: 1,6-anhydro-n-actetylmuramic acid kinase (AnmK) in complex with AMPPNP, and AnhMurNAc at 1.7 Angstroms resolution.
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-03-02
Authors: Jimenez-Faraco, E., Hermoso, J.A.
PDB entry 8cpc: 3D electron diffraction structure of Hen Egg-White Lysozyme from nano-crystals obtained by high pressure freezing and cryo-sectioning
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.91 Å
Deposited: 2023-03-02
Authors: Moriscot, C., Schoehn, G., Housset, D.
PDB entry 8cpd: Cryo-EM structure of CRaf dimer with 14:3:3
Classification: CYTOKINE
Source organism: Homo sapiens; Spodoptera frugiperda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-03-02
Authors: Dedden, D., Graedler, U., Schwarz, D., Thomsen, M., Leuthner, B., Schneider, E., Nitsche, J.
PDB entry 8cpe: CryoEM structure of AL55 amyloid fibrils extracted from the kidney of an AL amyloidosis patient.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-03-02
Authors: Puri, S., Schulte, T., Chaves-Sanjuan, A., Ricagno, S.
PDB entry 8cpg: Structure of the AT-Hook 1 peptide from the mammalian HMGA protein in complex with DNA
Classification: DNA BINDING PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-03-02
Authors: Boer, D.R., Campos, J.L.
PDB entry 8cph: Crystal structure of PPAR gamma (PPARG) in complex with WY-14643 (inactive form)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-03-02
Authors: Chaikuad, A., Merk, D., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8cpi: Crystal structure of PPAR gamma (PPARG) in complex with WY-14643
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-03-02
Authors: Chaikuad, A., Merk, D., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8cpj: Crystal structure of PPAR gamma (PPARG) in an inactive form
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-03-02
Authors: Chaikuad, A., Merk, D., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8cpk: Crystal structure of EtpA secretion domain from Enterotoxigenic Escherichia coli
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-03-02
Authors: Ntui, C.M., Schubert, W.D., Fleckenstein, J.M.
PDB entry 8cpl: YZw2 a scaffold for cryo-EM of small proteins of interest
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli; Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.605 Å
Deposited: 2023-03-03
Authors: Moche, M., Friberg, O., Nygren, P.A., Nilvebrant, J.
PDB entry 8cpm: Human apoferritin after 405 nm laser exposure
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.81 Å
Deposited: 2023-03-03
Authors: Last, M.G.F., Noteborn, W.E.M., Sharp, T.H.
PDB entry 8cpn: Crystal structure of the PolB16_OarG intein variant S1A, N183A
Classification: SPLICING
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-03-03
Authors: Kattelmann, S., Pasch, T., Mootz, H.D., Kummel, D.
PDB entry 8cpo: Crystal structure of the PolB16_OarG intein variant S1A, N183A, C111A, C165A
Classification: SPLICING
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-03-03
Authors: Kattelmann, S., Pasch, T., Mootz, H.D., Kuemmel, D.
PDB entry 8cpp: CRYSTAL STRUCTURES OF CYTOCHROME P450-CAM COMPLEXED WITH CAMPHANE, THIOCAMPHOR, AND ADAMANTANE: FACTORS CONTROLLING P450 SUBSTRATE HYDROXYLATION
Classification: OXIDOREDUCTASE(OXYGENASE)
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1990-05-18
Authors: Raag, R., Poulos, T.L.
PDB entry 8cpq: Crystal structure of human protein disulfide isomerase PDIA6 domain b
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-03-03
Authors: Jakob, R.P., Leder, A.L., Hiller, S., Maier, T.
PDB entry 8cpr: G13D mutant of KRAS4b (2-169) bound to GDP with the switch-I in fully open conformation crystallized in sodium potassium phosphate buffer
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-03-03
Authors: Moche, M., Jungholm, O., Strandback, E., Ampah-Korsah, H., Nyman, T., Orwar, O.
PDB entry 8cps: Human apoferritin
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.82 Å
Deposited: 2023-03-03
Authors: Last, M.G.F., Noteborn, W.E.M., Sharp, T.H.
PDB entry 8cpt: Human apoferritin after 488 nm laser exposure
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.79 Å
Deposited: 2023-03-03
Authors: Last, M.G.F., Noteborn, W.E.M., Sharp, T.H.
PDB entry 8cpu: Human apoferritin after 561 nm laser exposure
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.76 Å
Deposited: 2023-03-03
Authors: Last, M.G.F., Noteborn, W.E.M., Sharp, T.H.
PDB entry 8cpv: Human apoferritin
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.76 Å
Deposited: 2023-03-03
Authors: Last, M.G.F., Noteborn, W.E.M., Sharp, T.H.
PDB entry 8cpw: Human apoferritin after 405 nm + 488 nm laser exposure in presence of rsEGFP2
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.79 Å
Deposited: 2023-03-03
Authors: Last, M.G.F., Noteborn, W.E.M., Sharp, T.H.
PDB entry 8cpx: Human apoferritin after 488 nm laser exposure in presence of rsEGFP2
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.76 Å
Deposited: 2023-03-03
Authors: Last, M.G.F., Noteborn, W.E.M., Sharp, T.H.
PDB entry 8cpy: Extended cowpea chlorotic mottle virus
Classification: VIRUS
Source organism: Cowpea chlorotic mottle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-03-03
Authors: Harder, O.F., Barrass, S.V., Drabbels, M., Lorenz, U.J.
PDB entry 8cpz: Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K1179W mutant
Classification: TOXIN
Source organism: Photorhabdus luminescens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-03-03
Authors: Nganga, P.N., Roderer, D., Belyy, A., Prumbaum, D., Raunser, S.
PDB entry 8cq0: Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K567W K2008W mutant
Classification: TOXIN
Source organism: Photorhabdus luminescens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-03-03
Authors: Nganga, P.N., Roderer, D., Belyy, A., Prumbaum, D., Raunser, S.
PDB entry 8cq1: Stem-Loop 4 of the 5'-UTR of the SARS-CoV2 genomic RNA
Classification: RNA
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: SOLUTION NMR
Deposited: 2023-03-03
Authors: Duchardt-Ferner, E., Voegele, J.
PDB entry 8cq2: Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, C16S, C20S, C870S, T1279C mutant
Classification: TOXIN
Source organism: Photorhabdus luminescens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-03-03
Authors: Nganga, P.N., Roderer, D., Belyy, A., Prumbaum, D., Raunser, S.
PDB entry 8cq3: Bifunctional chorismate mutase/cyclohexadienyl dehydratase from Aequoribacter fuscus
Classification: UNKNOWN FUNCTION
Source organism: Aequoribacter fuscus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-03-03
Authors: Khatanbaatar, T., Cordara, G., Krengel, U.
PDB entry 8cq4: Bifunctional cyclohexadienyl dehydratase/chorismate mutase from Janthinobacterium sp. HH01
Classification: UNKNOWN FUNCTION
Source organism: Janthinobacterium sp. HH01
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-03-03
Authors: Khatanbaatar, T., Cordara, G., Krengel, U.
PDB entry 8cq6: Bifunctional cyclohexadienyl dehydratase/chorismate mutase from Duganella sacchari
Classification: UNKNOWN FUNCTION
Source organism: Duganella sacchari
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-03-03
Authors: Khatanbaatar, T., Cordara, G., Krengel, U.
PDB entry 8cq7: Crystal structure of phyllanthoside bound to the Candida albicans 80S ribosome
Classification: RIBOSOME
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-03-03
Authors: Kolosova, O., Zgadzay, Y., Yusupov, M.
PDB entry 8cq8: Mycobacterium tuberculosis dihydrofolate reductase in complex with methyl 4-(2,6-diamino-5-(cyclopropylethynyl)pyrimidin-4-yl)benzoate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-03-04
Authors: Kirkman, T.J., Dias, M.V.B., Coyne, A.G.
PDB entry 8cq9: Mycobacterium tuberculosis dihydrofolate reductase in complex with 5-(cyclopropylethynyl)-6-(4-(trifluoromethyl)phenyl)pyrimidine-2,4-diamine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-03-04
Authors: Kirkman, T.J., Dias, M.V.B., Coyne, A.G.
PDB entry 8cqa: Mycobacterium tuberculosis dihydrofolate reductase in complex with N-(4-(2,6-diamino-5-(cyclopropylethynyl)pyrimidin-4-yl)phenyl)acetamide
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-03-04
Authors: Kirkman, T.J., Dias, M.V.B., Coyne, A.G.
PDB entry 8cqb: Cryo-EM structure of the human GBP1 dimer bound to GDP-AlF3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-03-04
Authors: Kuhm, T.I., Jakobi, A.J.
PDB entry 8cqc: Cryo-EM structure of pentameric proteorhodopsin A18L mutant
Classification: PROTON TRANSPORT
Source organism: uncultured Gammaproteobacteria bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2023-03-05
Authors: Hirschi, S., Lemmin, T., Fotiadis, D.
PDB entry 8cqd: Cryo-EM structure of hexameric proteorhodopsin A18L mutant
Classification: PROTON TRANSPORT
Source organism: uncultured Gammaproteobacteria bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2023-03-05
Authors: Hirschi, S., Lemmin, T., Fotiadis, D.
PDB entry 8cqe: pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-Fluorocyclopropane-1-carboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-1-(2-methyl-4-(4-methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (Compound 37)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-03-06
Authors: Casement, R., Phuong Vu, L., Ciulli, A., Gutschow, M.
PDB entry 8cqf: Crystal Structure of a Chimeric Alpha-Amylase from Pseudoalteromonas Haloplanktis Complexed with Rearranged Acarbose
Classification: HYDROLASE
Source organism: Pseudoalteromonas haloplanktis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-03-06
Authors: Skagseth, S., Griese, J.J., Lund, B.A., van der Ent, F., Aqvist, J.
PDB entry 8cqg: Crystal Structure of a Chimeric Alpha-Amylase from Pseudoalteromonas Haloplanktis
Classification: HYDROLASE
Source organism: Pseudoalteromonas haloplanktis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-03-06
Authors: Skagseth, S., Lund, B.A., Griese, J.J., van der Ent, F., Aqvist, J.
PDB entry 8cqh: Ntaya virus methyltransferase in complex with GTP and SAH
Classification: TRANSFERASE
Source organism: Ntaya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-03-06
Authors: Boura, E., Krejcova, K.
PDB entry 8cqi: Human heparanase in complex with inhibitor R3794
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-03-06
Authors: Moran, E.M., Davies, G.J., Chen, C., Nieuwendijk, E.V., Wu, L., Skoulikopoulou, F., Riet, V.V., Overkleeft, H.S., Armstrong, Z.
PDB entry 8cqk: pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-Fluorocyclopropane-1-carboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-1-(2-methyl-4-(4-methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (Compound 30)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-03-06
Authors: Casement, R., Phuong Vu, L., Ciulli, A., Gutschow, M.
PDB entry 8cql: pVHL:EloB:EloC in complex with (2S,4R)-N-((S)-1-(5-Fluoro-2-methoxy-4-(4-methylthiazol-5-yl)phenyl)ethyl)-1-((S)-2-(1-fluorocyclopropane-1-carboxamido)-3,3-dimethylbutanoyl)-4-hydroxypyrrolidine-2-carboxamide (Compound 33)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-03-06
Authors: Casement, R., Phuong Vu, L., Ciulli, A., Gutschow, M.
PDB entry 8cqm: Broad-range phospholipase C from Listeria monocytogenes
Classification: HYDROLASE
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-03-06
Authors: Petrisic, N., Podobnik, M.
PDB entry 8cqn: Crystal structure of Borrelia burgdorferi paralogous family 12 outer surface protein BBK01
Classification: DNA BINDING PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-03-06
Authors: Brangulis, K., Drunka, L., Matisone, S., Akopjana, I., Tars, K.
PDB entry 8cqo: Crystal structure of Borrelia burgdorferi paralogous family 12 outer surface protein BBK01 (Se-Met data)
Classification: DNA BINDING PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-03-06
Authors: Brangulis, K., Drunka, L., Matisone, S., Akopjana, I., Tars, K.
PDB entry 8cqp: Crystal structure of an 8-repeat consensus TPR superhelix with Calcium (low concentration)
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-03-07
Authors: Liutkus, M., Rojas, A.L., Cortajarena, A.L.
PDB entry 8cqq: Crystal structure of an 8-repeat consensus TPR superhelix with Copper
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-03-07
Authors: Liutkus, M., Rojas, A.L., Cortajarena, A.L.
PDB entry 8cqr: Cryo-EM structure of the NINJ1 filament
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-03-07
Authors: Degen, M.D., Hiller, S.H., Maier, T.M.
PDB entry 8cqs: Flavin mononucleotide-dependent nitroreductase B.thetaiotaomicron (BT_0217)
Classification: OXIDOREDUCTASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-03-07
Authors: Blaha, J., Gratzl, S., Mortensen, S.A., Beckham, K.S.H., Chojnowski, G., Wilmanns, M., Zimmermann, M.
PDB entry 8cqt: Flavin mononucleotide-dependent nitroreductase B.thetaiotaomicron (BT_1316)
Classification: OXIDOREDUCTASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-03-07
Authors: Blaha, J., Adam, L., Beckham, K.S.H., Chojnowski, G., Wilmanns, M., Zimmermann, M.
PDB entry 8cqu: Flavin mononucleotide-dependent nitroreductase B.thetaiotaomicron (BT_1680)
Classification: OXIDOREDUCTASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-03-07
Authors: Blaha, J., Adam, L., Beckham, K.S.H., Chojnowski, G., Wilmanns, M., Zimmermann, M.
PDB entry 8cqv: Flavin mononucleotide-dependent nitroreductase B.thetaiotaomicron (BT_3392)
Classification: OXIDOREDUCTASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-03-07
Authors: Blaha, J., Adam, L., Beckham, K.S.H., Chojnowski, G., Wilmanns, M., Zimmermann, M.
PDB entry 8cqw: Crystal structure of the Candida albicans 80S ribosome in complex with Hygromycin B
Classification: RIBOSOME
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-03-07
Authors: Kolosova, O., Zgadzay, Y., Yusupov, M.
PDB entry 8cqx: Ribokinase from T.sp mutant A92G
Classification: HYDROLASE
Source organism: Thermus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-03-07
Authors: Timofeev, V.I., Shevtsov, M.B., Abramchik, Y.A., Kostromina, M.A., Zayats, E.A., Kuranova, I.P., Esipov, R.S.
PDB entry 8cqy: Crystal structure of the PTPN3 PDZ domain bound to the PBM TACE C-terminal peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-03-07
Authors: Genera, M., Colcombet-Cazenave, B., Croitoru, A., Raynal, B., Mechaly, A., Caillet, J., Haouz, A., Wolff, N., Caillet-Saguy, C.
PDB entry 8cqz: Homo sapiens Get3 in complex with the Get1 cytoplasmic domain
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-03-07
Authors: McDowell, M.A., Heimes, M., Wild, K., Saar, D., Sinning, I.
PDB entry 8cr0: Crystal structure of human carbonic anhydrase II in complex with a triazolyl benzoxaborole inhibitor
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2023-03-07
Authors: Alterio, V., De Simone, G., Esposito, D.
PDB entry 8cr1: Homo sapiens Get1/Get2 heterotetramer in complex with a Get3 dimer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-03-07
Authors: McDowell, M.A., Heimes, M., Wild, K., Sinning, I.
PDB entry 8cr2: Homo sapiens Get1/Get2 heterotetramer (a3' deletion variant) in complex with a Get3 dimer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-03-07
Authors: McDowell, M.A., Heimes, M., Wild, K., Sinning, I.