LiteFold/PDB huggingface dataset:
PDB entry 7ri8: The structure of BAM in MSP2N2 nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.5 Å
Deposited: 2021-07-19
Authors: Wu, R.R., Noinaj, N.
PDB entry 7ri9: The structure of BAM in MSP1E3D1 at 6.9 Angstrom resolution
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2021-07-19
Authors: Wu, R.R., Noinaj, N.
PDB entry 7ria: Griffithsin variant Y28A/Y68A/Y110A
Classification: SUGAR BINDING PROTEIN
Source organism: Griffithsia sp. (strain Q66D336)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-19
Authors: Zhao, G., Sun, J., Bewley, C.A.
PDB entry 7rib: Griffithsin mutant Y28F/Y68F/Y110F
Classification: SUGAR BINDING PROTEIN
Source organism: Griffithsia sp. (strain Q66D336)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-19
Authors: Zhao, G., Sun, J., Bewley, C.A.
PDB entry 7ric: Griffithsin variant Y28W/Y68W/Y110W
Classification: SUGAR BINDING PROTEIN
Source organism: Griffithsia sp. (strain Q66D336)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-07-19
Authors: Zhao, G., Sun, J., Bewley, C.A.
PDB entry 7rid: Griffithsin variant Y28A
Classification: SUGAR BINDING PROTEIN
Source organism: Griffithsia sp. (strain Q66D336)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-07-19
Authors: Zhao, G., Sun, J., Bewley, C.A.
PDB entry 7rie: Plasmodium falciparum M17 in complex with inhibitor MIPS2571
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2021-07-19
Authors: Webb, C.T., McGowan, S.
PDB entry 7rig: Structure of ACLY-D1026A-substrates
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2021-07-19
Authors: Wei, X., Marmorstein, R.
PDB entry 7rih: hyen D
Classification: PLANT PROTEIN
Source organism: Hybanthus enneaspermus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2021-07-20
Authors: Du, Q., Huang, Y.H., Craik, D.J., Wang, C.K.
PDB entry 7rii: [I11L]hyen D crystal structure
Classification: PLANT PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2021-07-20
Authors: Du, Q., Huang, Y.H., Craik, D.J., Wang, C.K.
PDB entry 7rij: [I11G]hyen D
Classification: PLANT PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2021-07-20
Authors: Du, Q., Huang, Y.H., Wang, C.K., Craik, D.J.
PDB entry 7rik: Magic-Angle-Spinning NMR Structure of Kinesin-1 Motor Domain Assembled with Microtubules
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: SOLID-STATE NMR
Deposited: 2021-07-20
Authors: Zhang, C., Guo, C., Russell, R.W., Quinn, C.M., Li, M., Williams, J.C., Gronenborn, A.M., Polenova, T.
PDB entry 7ril: Crystal structure of hairpin polyamide Py-Im 1 bound to 5' CCTGACCAGG
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-20
Authors: Oh, J., Dervan, P.B., Wang, D.
PDB entry 7rim: RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-07-20
Authors: Oh, J., Dervan, P.B., Wang, D.
PDB entry 7rin: Apo PTP1B by Native S-SAD at Room Temperature
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-07-20
Authors: Greisman, J.B., Dalton, K.M., Hekstra, D.R.
PDB entry 7rio: human PXR LBD bound to GSK003
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2021-07-20
Authors: Williams, S.P., Wisely, G.B., Ward, P.
PDB entry 7rip: RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2021-07-20
Authors: Oh, J., Dervan, P.B., Wang, D.
PDB entry 7riq: RNA polymerase II elongation complex scaffold 1 without polyamide
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-07-20
Authors: Oh, J., Dervan, P.B., Wang, D.
PDB entry 7ris: Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound phosphate
Classification: HYDROLASE
Source organism: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2021-07-20
Authors: Bingman, C.A., Hall, B.W., Smith, R.W., Fox, B.G., Donohue, T.J.
PDB entry 7rit: Drug-free A. baumannii MsbA
Classification: MEMBRANE PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2021-07-20
Authors: Thelot, F., Liao, M.
PDB entry 7riu: human PXR LBD bound to GSK002
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-07-20
Authors: Williams, S.P., Wisely, G.B., Ward, P.
PDB entry 7riv: human PXR LBD bound to GSK001
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-20
Authors: Williams, S.P., Wisely, G.B., Ward, P.
PDB entry 7riw: RNA polymerase II elongation complex scaffold 2, without polyamide
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-07-20
Authors: Oh, J., Dervan, P.B., Wang, D.
PDB entry 7rix: RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2021-07-20
Authors: Oh, J., Dervan, P.B., Wang, D.
PDB entry 7riy: RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 soaked with UTP
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2021-07-20
Authors: Oh, J., Dervan, P.B., Wang, D.
PDB entry 7riz: Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound 2-hydroxyquinoline
Classification: HYDROLASE
Source organism: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2021-07-20
Authors: Bingman, C.A., Hall, B.W., Smith, R.W., Fox, B.G., Donohue, T.J.
PDB entry 7rj0: Mouse Gamma S Crystallin L16 Octamer
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.919 Å
Deposited: 2021-07-20
Authors: Sagar, V.
PDB entry 7rj1: Crystal structure of Aro7p chorismate mutase from Candida albicans, complex with L-Trp
Classification: TRANSFERASE
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2021-07-20
Authors: Stogios, P.J., Evdokimova, E., Tan, K., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rj2: Co-crystal structure of lenacapavir bound to Q67H/N74D mutant of disulfide stabilized HIV-1 CA hexamer
Classification: Viral Protein/Inhibitor
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2021-07-20
Authors: Bester, S.M., Kvaratskhelia, M.
PDB entry 7rj3: Crystal Structure of the Forkhead Associated (FHA) Domain of the Glycogen Accumulation Regulator (GarA) from Mycobacterium tuberculosis
Classification: SIGNALING PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2021-07-20
Authors: Minasov, G., Shuvalova, L., Pshenychnyi, S., Dubrovska, I., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rj4: Co-crystal structure of lenacapavir bound to N74D mutant of disulfide stabilized HIV-1 CA hexamer
Classification: Viral Protein/Inhibitor
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2021-07-20
Authors: Bester, S.M., Kvaratskhelia, M.
PDB entry 7rj5: The structure of BAM in complex with EspP at 7 Angstrom resolution
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2021-07-20
Authors: Wu, R.R., Noinaj, N.
PDB entry 7rj6: CRYSTAL STRUCTURE OF AP2 ASSOCIATED KINASE 1 ISOFORM 1 COMPLEXED WITH LIGAND (2R)-2-AMINO-N-[3-(DIFLUOROM ETHOXY)-4-(1,3-OXAZOL-5-YL)PHENYL]-4-METHYLPENTANAMIDE
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.132 Å
Deposited: 2021-07-20
Authors: Muckelbauer, J.
PDB entry 7rj7: CRYSTAL STRUCTURE OF AP2 ASSOCIATED KINASE 1 ISOFORM 1 COMPLEXED WITH LIGAND 2-(1-AMINO-3-METHYLBUTYL)-6- (PYRIDIN-4-YL)QUINOLINE-4-CARBONITRILE
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.124 Å
Deposited: 2021-07-20
Authors: Muckelbauer, J.
PDB entry 7rj8: CRYSTAL STRUCTURE OF AP2 ASSOCIATED KINASE 1 ISOFORM 1 COMPLEXED WITH LIGAND (2R)-2-AMINO-N-[3-(DIFLUOROM ETHOXY)-4-(1,3-OXAZOL-5-YL)PHENYL]-4-METHYLPENTANAMIDE
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2021-07-20
Authors: Pokross, M., Muckelbauer, J.
PDB entry 7rj9: Crystal structure of the Vitronectin hemopexin-like domain binding Calcium
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-07-20
Authors: Aleshin, A.E., Marassi, F.M.
PDB entry 7rja: Complex III2 from Candida albicans, inhibitor free
Classification: MEMBRANE PROTEIN
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-20
Authors: Di Trani, J.M., Rubinstein, J.L.
PDB entry 7rjb: Complex III2 from Candida albicans, inhibitor free, Rieske head domain in b position
Classification: MEMBRANE PROTEIN
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-20
Authors: Di Trani, J.M., Rubinstein, J.L.
PDB entry 7rjc: Complex III2 from Candida albicans, inhibitor free, Rieske head domain in intermediate position
Classification: MEMBRANE PROTEIN
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-20
Authors: Di Trani, J.M., Rubinstein, J.L.
PDB entry 7rjd: Complex III2 from Candida albicans, inhibitor free, Rieske head domain in c position
Classification: MEMBRANE PROTEIN
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-20
Authors: Di Trani, J.M., Rubinstein, J.L.
PDB entry 7rje: Complex III2 from Candida albicans, Inz-5 bound
Classification: MEMBRANE PROTEIN
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-20
Authors: Di Trani, J.M., Rubinstein, J.L.
PDB entry 7rjf: MOPD-1 mutant-L47W
Classification: ANTITUMOR PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-20
Authors: Huawu, Y., Conan, K.W., Gordon, J.K., Brett, M.C., Yen-Hua, H., David, J.C.
PDB entry 7rji: BthTX-II variant b, from Bothrops jararacussu venom, complexed with stearic acid
Classification: TOXIN
Source organism: Bothrops jararacussu
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2021-07-21
Authors: Borges, R.J., Fontes, M.R.M.
PDB entry 7rjj: Crystal Structure of the Peptidoglycan Binding Domain of the Outer Membrane Protein (OmpA) from Klebsiella pneumoniae with bound D-alanine
Classification: PEPTIDE BINDING PROTEIN
Source organism: Klebsiella pneumoniae subsp. pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-07-21
Authors: Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rjk: Crystal structure of human Bromodomain containing protein 3 (BRD3) in complex with hnRNPK
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-07-21
Authors: Fedorov, E., Islam, K., Ghosh, A.
PDB entry 7rjl: Crystal structure of human Bromodomain containing protein 3 (BRD3) in complex with SHMT
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-07-21
Authors: Fedorov, E., Islam, K., Ghosh, A.
PDB entry 7rjm: Crystal structure of human Bromodomain containing protein 3 (BRD3) in complex with ILF3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-21
Authors: Fedorov, E., Islam, K., Ghosh, A.
PDB entry 7rjn: Crystal structure of human bromodomain containing protein 3 (BRD3) in complex with BCLTF1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-07-21
Authors: Fedorov, E., Islam, K., Ghosh, A.
PDB entry 7rjo: Crystal structure of human Bromodomain containing protein 4 (BRD4) in complex with hnRNPK
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2021-07-21
Authors: Fedorov, E., Islam, K., Ghosh, A.
PDB entry 7rjp: Crystal structure of human Bromodomain containing protein 4 (BRD4) in complex with SHMT
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2021-07-21
Authors: Fedorov, E., Islam, K., Ghosh, A.
PDB entry 7rjq: Crystal structure of human Bromodomain containing protein 4 (BRD4) in complex with ILF3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2021-07-21
Authors: Fedorov, E., Islam, K., Ghosh, A.
PDB entry 7rjr: Crystal structure of human Bromodomain containing protein 4 (BRD4) in complex with BCLTF1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-07-21
Authors: Fedorov, E., Islam, K., Ghosh, A.
PDB entry 7rjt: Aplysia Slo1 with Barium
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2021-07-21
Authors: Zhu, J., Srivastava, S., Cachau, R., Holmgren, M.
PDB entry 7rjz: BthTX-II variant a, from Bothrops jararacussu venom, complexed with benzoic acid
Classification: TOXIN
Source organism: Bothrops jararacussu
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-07-21
Authors: Borges, R.J., Fontes, M.R.M.
PDB entry 7rk0: Crystal structure of Thermovibrio ammonificans THI4
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermovibrio ammonificans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2021-07-21
Authors: Li, Q., Bruner, S.D.
PDB entry 7rk1: Crystal structure of the human astrovirus serotype 8 capsid spike in complex with scFv 3E8, an astrovirus-neutralizing antibody, at 2.05-A resolution
Classification: VIRAL PROTEIN
Source organism: Human astrovirus-8; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-07-21
Authors: Meyer, L., DuBois, R.M.
PDB entry 7rk2: Crystal structure of the human astrovirus serotype 8 capsid spike in complex with scFv 2D9, an astrovirus-neutralizing antibody, at 2.65-A resolution
Classification: VIRAL PROTEIN
Source organism: Human astrovirus-8; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2021-07-21
Authors: Meyer, L., Cuellar, C., DuBois, R.M.
PDB entry 7rk3: Crystal structure of human N-myristoyltransferase 1 fragment (residues 109-496) bound to diacylated human Arf6 octapeptide and Coenzyme A
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-07-21
Authors: Fenwick, M.K., Lin, H.
PDB entry 7rk4: Mannitol-2-dehydrogenase from Aspergillus fumigatus
Classification: OXIDOREDUCTASE
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-22
Authors: Nguyen, S., Bruning, J.B.
PDB entry 7rk5: Mannitol-2-dehydrogenase bound to NADH from Aspergillus fumigatus
Classification: OXIDOREDUCTASE
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-22
Authors: Nguyen, S., Bruning, J.B.
PDB entry 7rk6: Aplysia Slo1 with Barium
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2021-07-22
Authors: Zhu, J., Srivastava, S., Cachau, R., Holmgren, M.
PDB entry 7rk7: The complex between TIL 1383i TCR and human Class I MHC HLA-A2 with the bound Tyrosinase(369-377)(N371D) nonameric peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2021-07-22
Authors: Singh, N.K., Davancaze, L.M., Arbuiso, A., Weiss, L.I., Keller, G.L.J., Baker, B.M.
PDB entry 7rk8: Cryo-EM Structure of Adeno-Associated Virus Serotype 9 with Engineered Peptide Domain PHP.B (AAV9-PHP.B)
Classification: VIRUS
Source organism: Adeno-associated virus 9
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2021-07-22
Authors: Fluck, E.C., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 7rk9: Cryo-EM Structure of Adeno-Associated Virus Serotype 1 with Engineered Peptide Domain PHP.B (AAV1-PHP.B)
Classification: VIRUS
Source organism: Adeno-associated virus - 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.32 Å
Deposited: 2021-07-22
Authors: Fluck, E.C., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 7rka: Crystal structure analysis of Colorado potato beetle glutathione-S transferase LdGSTu1
Classification: TRANSFERASE
Source organism: Leptinotarsa decemlineata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-22
Authors: Moural, T.W., Zhu, F.
PDB entry 7rkb: Crystal Structure of Putative Pterin Binding Protein (PruR) from Klebsiella pneumoniae in Complex with Neopterin
Classification: PTERIN BINDING PROTEIN
Source organism: Klebsiella pneumoniae subsp. pneumoniae SA1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-07-22
Authors: Minasov, G., Shuvalova, L., Kiryukhina, O., Dubrovska, I., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rkc: Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-07-22
Authors: Kennedy, M.A., Stoddard, B.L., Hicks, D.R., Bera, A.K.
PDB entry 7rkd: X-Ray structure of Insulin Analog GLULISINE
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2021-07-22
Authors: Reyes-Grajeda, J.P.
PDB entry 7rke: Estrogen Receptor Alpha Ligand Binding Domain Y537S in Complex with 4-(((2-chloro-5-phenylthieno[2,3-d]pyrimidin-4-yl)amino)methyl)phenol and GRIP Peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-07-22
Authors: Joiner, C., Sammeta, V.K.R., Norris, J.D., McDonnell, D.P., Willson, T.M., Fanning, S.W.
PDB entry 7rkf: Structure of CX3CL1-US28-G11iN18-scFv16 in TL-state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human cytomegalovirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-07-22
Authors: Tsutsumi, N., Maeda, S., Qu, Q., Skiniotis, G., Kobilka, B.K., Garcia, K.C.
PDB entry 7rkg: Griffithsin mutant Y28W
Classification: SUGAR BINDING PROTEIN
Source organism: Griffithsia sp. (strain Q66D336)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-22
Authors: Zhao, G., Sun, J., Bewley, C.
PDB entry 7rkh: Yeast CTP Synthase (URA8) tetramer bound to ATP/UTP at neutral pH
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-07-22
Authors: Hansen, J.M., Lynch, E.M., Farrell, D.P., DiMaio, F., Quispe, J., Kollman, J.M.
PDB entry 7rki: Griffithsin-S10Y/S42Y/S88Y
Classification: SUGAR BINDING PROTEIN
Source organism: Griffithsia sp. (strain Q66D336)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-07-22
Authors: Sun, J.D., Zhao, G.X.
PDB entry 7rkk: Structure of Nicotinamide N-Methyltransferase (NNMT) in complex with II399 (C2 space group)
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2021-07-22
Authors: Yadav, R., Noinaj, N., Iyamu, I.D., Huang, R.
PDB entry 7rkl: Structure of Nicotinamide N-Methyltransferase (NNMT) in complex with II399 (P1 space group)
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2021-07-22
Authors: Yadav, R., Noinaj, N., Iyamu, I.D., Huang, R.
PDB entry 7rkm: Structure of CX3CL1-US28-Gi-scFv16 in C-state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human betaherpesvirus 5; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-07-22
Authors: Tsutsumi, N., Qu, Q., Jude, K.M., Skiniotis, G., Garcia, K.C.
PDB entry 7rkn: Structure of CX3CL1-US28-Gi-scFv16 in OC-state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human cytomegalovirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-07-22
Authors: Tsutsumi, N., Qu, Q., Jude, K.M., Skiniotis, G., Garcia, K.C.
PDB entry 7rkp: The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with cyclic compound SJ001034733
Classification: Viral Protein, Hydrolase
Source organism: Influenza A virus (strain swl A/California/04/2009 H1N1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2021-07-22
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 7rkr: Naegleria fowleri CYP51 (NfCYP51) complex with (S)-1-(4-fluorophenyl)-2-(1H-imidazol-1-yl)ethyl 3-(trifluoromethyl)benzoate
Classification: OXIDOREDUCTASE
Source organism: Naegleria fowleri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2021-07-22
Authors: Sharma, V., Podust, L.M.
PDB entry 7rks: Structure of the SARS-CoV receptor binding domain in complex with the human neutralizing antibody Fab fragment, C118
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-07-22
Authors: Jette, C.A., Bjorkman, P.J., Barnes, C.O.
PDB entry 7rkt: Naegleria fowleri CYP51 (NfCYP51) complex with (S)-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl 3-(trifluoromethyl)benzoate
Classification: OXIDOREDUCTASE
Source organism: Naegleria fowleri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-22
Authors: Sharma, V., Podust, L.M.
PDB entry 7rku: Structure of the SARS-CoV-2 receptor binding domain in complex with the human neutralizing antibody Fab fragment, C022
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-07-22
Authors: Jette, C.A., Bjorkman, P.J., Barnes, C.O.
PDB entry 7rkv: Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody C118 (State 1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2021-07-22
Authors: Barnes, C.O., Jette, C.A., Bjorkman, P.J.
PDB entry 7rkw: Naegleria fowleri CYP51(NfCYP51) complex with (S)-1-(4-fluorophenyl)-2-(1H-imidazol-1-yl)ethyl 3,5-dichlorobenzoate
Classification: OXIDOREDUCTASE
Source organism: Naegleria fowleri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2021-07-22
Authors: Sharma, V., Podust, L.M.
PDB entry 7rkx: Structure of US27-Gi-scFv16 in CL-state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human cytomegalovirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-22
Authors: Tsutsumi, N., Jude, K.M., Garcia, K.C.
PDB entry 7rky: Binding mode of US27-Gi-scFv16 in OCL-state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human cytomegalovirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-07-22
Authors: Tsutsumi, N., Jude, K.M., Garcia, K.C.
PDB entry 7rkz: Structure of ACLY D1026A-substrates-asym-int
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-07-22
Authors: Wei, X., Marmorstein, R.
PDB entry 7rl0: Yeast CTP Synthase (URA8) Filament bound to ATP/UTP at low pH
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-07-22
Authors: Hansen, J.M., Lynch, E.M., Farrell, D.P., DiMaio, F., Quispe, J., Kollman, J.M.
PDB entry 7rl1: AAVrh.10-7x capsid
Classification: VIRUS
Source organism: Adeno-associated virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2021-07-23
Authors: Mietzsch, M., McKenna, R.
PDB entry 7rl2: Crystal Structure of the Human Cytochrome P450 2C9*8 (CYP2C9*8) Genetic Variant in Complex with the Drug Losartan
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2021-07-23
Authors: Shah, M.B.
PDB entry 7rl3: Structure of Drosophila melanogaster Plk4 PB3
Classification: SIGNALING PROTEIN, TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-07-23
Authors: Slep, K.C., Slevin, L.K.
PDB entry 7rl4: Cryo-EM structure of human PrP23-144 amyloid fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2021-07-23
Authors: Li, Q., Surewicz, W.K.
PDB entry 7rl5: Yeast CTP Synthase (URA8) filament bound to CTP at low pH
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-07-23
Authors: Hansen, J.M., Lynch, E.M., Farrell, D.P., DiMaio, F., Quispe, J., Kollman, J.M.
PDB entry 7rl6: Cryo-EM structure of human p97-R155H mutant bound to ADP.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rl7: Cryo-EM structure of human p97-R155H mutant bound to ATPgS.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rl8: Crystal Structure of C79A Mutant of Class D beta-lactamase from Clostridium difficile 630
Classification: HYDROLASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-07-23
Authors: Minasov, G., Shuvalova, L., Dubrovska, I., Rosas-Lemus, M., Jedrzejczak, R., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rl9: Cryo-EM structure of human p97-R191Q mutant bound to ADP.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rla: Cryo-EM structure of human p97-R191Q mutant bound to ATPgS.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rlb: Cryo-EM structure of human p97-A232E mutant bound to ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rlc: Cryo-EM structure of human p97-A232E mutant bound to ATPgS.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rld: Cryo-EM structure of human p97-E470D mutant bound to ADP.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rle: Crystal structure of PPAR gamma in complex with CREB-binding protein and agonist GW1929
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-07-23
Authors: Nemetchek, M.D., Sprang, S.R., Hughes, T.S.
PDB entry 7rlf: Cryo-EM structure of human p97-E470D mutant bound to ATPgS.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rlg: Cryo-EM structure of human p97-D592N mutant bound to ADP.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rlh: Cryo-EM structure of human p97-D592N mutant bound to ATPgS.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rli: Cryo-EM structure of human p97 bound to CB-5083 and ADP.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rlj: Cryo-EM structure of human p97 bound to CB-5083 and ATPgS.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-07-23
Authors: Caffrey, B., Zhu, X., Berezuk, A., Tuttle, K., Chittori, S., Subramaniam, S.
PDB entry 7rlk: Wallaby TTR
Classification: TRANSPORT PROTEIN
Source organism: Macropus eugenii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2021-07-25
Authors: D-Souza, D.G., Richardson, S.J.
PDB entry 7rll: Crystal structure of ARF3 from Candida albicans in complex with guanosine-3'-monophosphate-5'-diphosphate
Classification: SIGNALING PROTEIN
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-07-25
Authors: Stogios, P.J., Michalska, K., Evdokimova, E., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rlm: Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein
Classification: VIRAL PROTEIN
Source organism: Potato leafroll virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-07-25
Authors: Adams, M.C., Chappie, J.S., Schiltz, C.J.
PDB entry 7rlo: Structure of the human eukaryotic translation initiation factor 2B (eIF2B) in complex with a viral protein NSs
Classification: TRANSLATION
Source organism: Homo sapiens; Sandfly fever sicilian virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-07-26
Authors: Wang, L., Schoof, M., Cogan, J., Lawrence, R., Boone, M., Wuerth, J., Frost, M., Walter, P.
PDB entry 7rlr: Crystal Structure of K83A Mutant of Class D beta-lactamase from Clostridium difficile 630
Classification: HYDROLASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-07-26
Authors: Minasov, G., Shuvalova, L., Dubrovska, I., Rosas-Lemus, M., Jedrzejczak, R., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7rls: Room temperature X-ray structure of SARS-CoV-2 main protease (Mpro) in complex with HL-3-68
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-26
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7rlt: Structure of ligand-free ALDH1L1 (10-formyltetrahydrofolate dehydrogenase)
Classification: CYTOSOLIC PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-07-26
Authors: Tsybovsky, Y., Sereda, V., Golczak, M., Krupenko, N.I., Krupenko, S.A.
PDB entry 7rlu: Structure of ALDH1L1 (10-formyltetrahydrofolate dehydrogenase) in complex with NADP
Classification: CYTOSOLIC PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-07-26
Authors: Tsybovsky, Y., Sereda, V., Golczak, M., Krupenko, N.I., Krupenko, S.A.
PDB entry 7rlv: Antibody 2F2 in complex with P. vivax CSP peptide GDRADGQPAGDRADGQPA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-07-26
Authors: Kucharska, I., Julien, J.P.
PDB entry 7rlw: Antibody 2F2 in complex with P. vivax CSP peptide GDRAAGQPAGDRAAGQPA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2021-07-26
Authors: Kucharska, I., Julien, J.P.
PDB entry 7rlx: Antibody 2F2 in complex with P. vivax CSP peptide GDRADGQPAGDRAAGQPA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-07-26
Authors: Kucharska, I., Julien, J.P.
PDB entry 7rly: Antibody 2F2 in complex with P. vivax CSP peptide DRAAGQPAGDRADGQPA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2021-07-26
Authors: Kucharska, I., Julien, J.P.
PDB entry 7rlz: Antibody 2F2 in complex with P. vivax CSP peptide GDRAAGQPAGNGAGGQAA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2021-07-26
Authors: Kucharska, I., Julien, J.P.
PDB entry 7rm0: Antibody 2E10.E9 in complex with P. vivax CSP peptide ANGAGNQPGANGAGNQPG
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2021-07-26
Authors: Kucharska, I., Ivanochko, D., Julien, J.P.
PDB entry 7rm1: Antibody 2F2 in complex with P. vivax CSP peptide EDGAGNQPGANGAGNQPGANGAGNQPG
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2021-07-26
Authors: Kucharska, I., Ivanochko, D., Julien, J.P.
PDB entry 7rm2: Room temperature X-ray structure of SARS-CoV-2 main protease (Mpro) in complex with Mcule-CSR-494190-S1
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-26
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7rm3: Antibody 2E10.E9 in complex with P. vivax CSP peptide ANGAGNQPGANGAGNQPGANGAGGQAA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2021-07-26
Authors: Kucharska, I., Ivanochko, D., Julien, J.P.
PDB entry 7rm4: Neoantigen p53R175H-specific TCR 6-11 binds to p53R175H-HLA-A2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.33 Å
Deposited: 2021-07-26
Authors: Wu, D., Mariuzza, R.A.
PDB entry 7rm5: MicroED structure of the human adenosine receptor at 2.8A
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.79 Å
Deposited: 2021-07-26
Authors: Martynowycz, M.W., Shiriaeva, A., Ge, X., Hattne, J., Nannenga, B.L., Cherezov, V., Gonen, T.
PDB entry 7rm6: Horse liver alcohol dehydrogenase in complex with NADH and N-cylcohexyl formamide
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2021-07-26
Authors: Zheng, C., Boxer, S.G.
PDB entry 7rm7: The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with ADP to 1.025 Angstrom resolution
Classification: LIGASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.025 Å
Deposited: 2021-07-26
Authors: Cuypers, M.G., Subramanian, C., Rock, C.O., White, S.W.
PDB entry 7rm8: Solution NMR structure of PDLIM7 PDZ bound to SNX17 peptide
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2021-07-26
Authors: Healy, M.D., Collins, B.M., Mobli, M.
PDB entry 7rm9: Human Malate Dehydrogenase I (MDHI)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-07-27
Authors: McCue, W., Finzel, B.C.
PDB entry 7rma: Structure of the fourth UIM (Ubiquitin Interacting Motif) of ANKRD13D in complex with a high affinity UbV (Ubiquitin Variant)
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-27
Authors: Singer, A.U., Manczyk, N., Veggiani, G., Sicheri, F., Sidhu, S.S.
PDB entry 7rmb: Room temperature X-ray structure of SARS-CoV-2 main protease (Mpro) in complex with HL-3-78
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-27
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7rmc: Yeast CTP Synthase (Ura7) filament bound to CTP at low pH
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-07-27
Authors: Hansen, J.M., Lynch, E.M., Farrell, D.P., DiMaio, F., Quispe, J., Kollman, J.M.
PDB entry 7rmd: Crystal structure of the first bromodomain of human BRD4 in complex with SJ001011461-1
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2021-07-27
Authors: Stachowski, T.R., Fischer, M.
PDB entry 7rme: Room temperature X-ray structure of SARS-CoV-2 main protease (Mpro) in complex with HL-3-52
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-27
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7rmf: Substrate-bound Ura7 filament at low pH
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.3 Å
Deposited: 2021-07-27
Authors: Hansen, J.M., Lynch, E.M., Farrell, D.P., DiMaio, F., Quispe, J., Kollman, J.M.
PDB entry 7rmg: Substance P bound to active human neurokinin 1 receptor in complex with miniGs/q70
Classification: SIGNALING PROTEIN/MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-07-27
Authors: Harris, J.A., Faust, B., Gondin, A.B., Daemgen, M.A., Suomivuori, C.M., Veldhuis, N.A., Cheng, Y., Dror, R.O., Thal, D., Manglik, A.
PDB entry 7rmh: Substance P bound to active human neurokinin 1 receptor in complex with miniGs399
Classification: SIGNALING PROTEIN/MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-07-27
Authors: Harris, J.A., Faust, B., Gondin, A.B., Daemgen, M.A., Suomivuori, C.M., Veldhuis, N.A., Cheng, Y., Dror, R.O., Thal, D., Manglik, A.
PDB entry 7rmi: SP6-11 biased agonist bound to active human neurokinin 1 receptor in complex with miniGs/q70
Classification: SIGNALING PROTEIN/MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-07-27
Authors: Harris, J.A., Faust, B., Gondin, A.B., Daemgen, M.A., Suomivuori, C.M., Veldhuis, N.A., Cheng, Y., Dror, R.O., Thal, D., Manglik, A.
PDB entry 7rmj: Disulfide stabilized HIV-1 CA hexamer in complex with capsid inhibitor (S)-N-(1-(3-(4-chloro-3-(methylsulfonamido)-1-(2,2,2-trifluoroethyl)-1H-indazol-7-yl)-6-(3-methyl-3-(methylsulfonyl)but-1-yn-1-yl)pyridin-2-yl)-2-(3,5-difluorophenyl)ethyl)-2-(3-(trifluoromethyl)-4,5,6,7-tetrahydro-1H-indazol-1-yl)acetamide
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2021-07-27
Authors: Bester, S.M., Kvaratskhelia, M.
PDB entry 7rmk: Yeast CTP Synthase (Ura7) Bundle bound to substrates at low pH
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2021-07-27
Authors: Hansen, J.M., Lynch, E.M., Farrell, D.P., DiMaio, F., Quispe, J., Kollman, J.M.
PDB entry 7rml: Neisseria meningitidis Methylenetetrahydrofolate reductase in complex with FAD
Classification: OXIDOREDUCTASE
Source organism: Neisseria meningitidis serogroup B (strain MC58)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-07-27
Authors: Pederick, J.L., Wegener, K.L., Salaemae, W., Bruning, J.B.
PDB entry 7rmm: Structure of N74D mutant of disulfide stabilized HIV-1 CA hexamer
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-07-27
Authors: Bester, S.M., Kvaratskhelia, M.
PDB entry 7rmn: Crystal structure of triosephosphate isomerase from Verrucomicrobium spinosum
Classification: ISOMERASE
Source organism: Verrucomicrobium spinosum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2021-07-27
Authors: Vickers, C.J., Fraga, D., Patrick, W.M.
PDB entry 7rmo: Yeast CTP Synthase (Ura7) Bundle bound to Products at low pH
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2021-07-27
Authors: Hansen, J.M., Lynch, E.M., Farrell, D.P., DiMaio, F., Quispe, J., Kollman, J.M.
PDB entry 7rmp: Structure of ACLY D1026A - substrates-asym
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-07-28
Authors: Wei, X., Marmorstein, R.
PDB entry 7rmq: Crystal structure of cycloviolacin O2
Classification: PLANT PROTEIN
Source organism: Viola odorata; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2021-07-28
Authors: Huang, Y.H., Du, Q.
PDB entry 7rmr: Crystal structure of [I11L]cycloviolacin O2
Classification: PLANT PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2021-07-28
Authors: Huang, Y.H., Du, Q., Craik, D.J.
PDB entry 7rms: Crystal structure of [I11G]cycloviolacin O2
Classification: PLANT PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2021-07-28
Authors: Huang, Y.H., Du, Q., Craik, D.J.
PDB entry 7rmt: Room temperature X-ray structure of SARS-CoV-2 main protease (Mpro) in complex with HL-3-70
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-07-28
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7rmu: Structure of Thermomonospora curvata heme-containing DyP-type peroxidase with a modified axial ligand
Classification: OXIDOREDUCTASE
Source organism: Thermomonospora curvata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-28
Authors: Khadka, S., Li, P., Geisbrecht, B.V.
PDB entry 7rmv: Yeast CTP Synthase (Ura7) H360R Filament bound to Substrates
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.7 Å
Deposited: 2021-07-28
Authors: Hansen, J.M., Lynch, E.M., Farrell, D.P., DiMaio, F., Quispe, J., Kollman, J.M.
PDB entry 7rmw: Crystal structure of B. subtilis PurR bound to ppGpp
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2021-07-28
Authors: Schumacher, M.A.
PDB entry 7rmx: Structure of De Novo designed tunable symmetric protein pockets
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-07-28
Authors: Bera, A.K., Hicks, D.R., Kang, A., Sankaran, B., Baker, D.
PDB entry 7rmy: De Novo designed tunable protein pockets, D_3-337
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2021-07-28
Authors: Bera, A.K., Hicks, D.R., Kang, A., Sankaran, B., Baker, D.
PDB entry 7rmz: Room temperature X-ray structure of SARS-CoV-2 main protease (Mpro) in complex with HL-3-63
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-07-28
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7rn0: Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-57-3R
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-07-28
Authors: Sacco, M., Chen, Y.