LiteFold/PDB huggingface dataset:
PDB entry 7jxd: Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-08-27
Authors: Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
PDB entry 7jxe: Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.043 Å
Deposited: 2020-08-27
Authors: Tortorici, M.A., Park, Y.J., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
PDB entry 7jxf: E. coli TSase complex with a bi-substrate reaction intermediate diastereomer analog
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-08-27
Authors: Finer-Moore, J., Kholodar, S.A., Stroud, R.M., Kohen, A., Moliner, V., Swiderek, K.
PDB entry 7jxg: Structural model for Fe-containing human acireductone dioxygenase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-08-27
Authors: Pochapsky, T.C., Liu, X., Deshpande, A., Ringe, D., Garber, A., Ryan, J.
PDB entry 7jxh: HER2 in complex with JBJ-08-178-01
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.27 Å
Deposited: 2020-08-27
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7jxi: EGFR kinase (T790M/V948R) in complex with PF-06747775
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2020-08-27
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7jxk: EGFR kinase (T790M/V948R) in complex with PF-06747775 and JBJ-04-125-02
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-08-27
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7jxl: EGFR kinase (T790M/V948R) in complex with AZ5104
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-08-27
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7jxm: EGFR kinase (T790M/V948R) in complex with osimertinib and EAI045
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.192 Å
Deposited: 2020-08-27
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7jxn: Beta hairpin derived from Abeta17-36 with an F20Cha mutation
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-08-27
Authors: Kreutzer, A.G., Haerianardakani, S., Nowick, J.S.
PDB entry 7jxo: Triangular trimer of beta-hairpins derived from Abeta17-36 with an F20Cha mutation
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2020-08-27
Authors: Kreutzer, A.G., Haerianardakani, S., Nowick, J.S.
PDB entry 7jxp: EGFR kinase (T790M/V948R) in complex with osimertinib and JBJ-04-125-02
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2020-08-27
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7jxq: EGFR kinase (T790M/V948R) in complex with allosteric inhibitor JBJ-09-063
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2020-08-27
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7jxr: Crystal Structure Human Immunodeficiency Virus-1 Matrix protein Mutant Q63R Crystal Form 1
Classification: STRUCTURAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2020-08-27
Authors: Green, T.J., Eastep, G.N., Ghanam, R.H., Saad, J.S.
PDB entry 7jxs: Crystal Structure Human Immunodeficiency Virus-1 Matrix protein Mutant Q63R Crystal Form 2
Classification: STRUCTURAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-08-27
Authors: Green, T.J., Eastep, G.N., Ghanam, R.H., Saad, J.S.
PDB entry 7jxt: Ovine COX-1 in complex with the subtype-selective derivative 2a
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Ovis aries
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2020-08-27
Authors: Ko, Y., Iaselli, M., Miciaccia, M., Friedrich, L., Schneider, G., Scilimati, A., Cingolani, G.
PDB entry 7jxu: Structure of monobody 32 human MLKL pseudokinase domain complex
Classification: TRANSFERASE
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2020-08-28
Authors: Meng, Y., Garnish, S.E., Koide, A., Koide, S., Czabotar, P.E., Murphy, J.M.
PDB entry 7jxv: ANTH domain of CALM (clathrin-assembly lymphoid myeloid leukemia protein) bound to ubiquitin
Classification: ENDOCYTOSIS
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-08-28
Authors: Pashkova, N., Gakhar, L., Schnicker, N.J., Piper, R.C.
PDB entry 7jxw: EGFR kinase (T790M/V948R) in complex with osimertinib and JBJ-09-063
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-08-28
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7jxx: Structure of TTBK1 kinase domain in complex with Compound 3
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2020-08-28
Authors: Chodaprambil, J.V.
PDB entry 7jxy: Structure of TTBK1 kinase domain in complex with Compound 18
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-08-28
Authors: Chodaprambil, J.V.
PDB entry 7jxz: Structure of HbA with compound (S)-4
Classification: OXYGEN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2020-08-28
Authors: Jasti, J.
PDB entry 7jy0: Structure of HbA with compound 9
Classification: OXYGEN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2020-08-28
Authors: Jasti, J.
PDB entry 7jy1: Structure of HbA with compound 19
Classification: OXYGEN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2020-08-28
Authors: Jasti, J.
PDB entry 7jy2: Z-DNA joint X-ray/Neutron
Classification: DNA
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2020-08-28
Authors: Harp, J.M., Coates, L., Egli, M.
PDB entry 7jy3: Structure of HbA with compound 23 (PF-07059013)
Classification: OXYGEN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2020-08-28
Authors: Jasti, J.
PDB entry 7jy4: hALK in complex with ((1S,2S)-1-(2,4-difluorophenyl)-2-(2-(3-methyl-1H-pyrazol-5-yl)-4-(trifluoromethyl)phenoxy)cyclopropyl)methanamine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2020-08-28
Authors: McGrath, A.P., Zou, H., Lane, W., Saikatendu, K.
PDB entry 7jy5: Structure of human p97 in complex with ATPgammaS and Npl4/Ufd1 (masked around p97)
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2020-08-28
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7jy6: Analysis of a strand exchange reaction with a mini filament of 9-RecA, oligo(dT)27 primary ssDNA, non-homologous 120 bp dsDNA and ATPgammaS
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2020-08-29
Authors: Pavletich, N.P.
PDB entry 7jy7: Structure of a 12 base pair RecA-D loop complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-08-29
Authors: Pavletich, N.P.
PDB entry 7jy8: Analysis of a strand exchange reaction with a mini filament of 9-RecA, 27-mer ssDNA, partially-homologous 67 bp dsDNA and ATPgammaS
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2020-08-29
Authors: Pavletich, N.P.
PDB entry 7jy9: Structure of a 9 base pair RecA-D loop complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2020-08-29
Authors: Pavletich, N.P.
PDB entry 7jya: Crystal structure of E3 ligase in complex with peptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2020-08-30
Authors: Yan, X., Dong, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Min, J.R., Dong, C., Structural Genomics Consortium (SGC)
PDB entry 7jyb: Binary soak structure of alkanesulfonate monooxygenase MsuD from Pseudomonas fluorescens with FMN
Classification: FLAVOPROTEIN, OXIDOREDUCTASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2020-08-30
Authors: Liew, J.J.M., Dowling, D.P., El Saudi, I.M.
PDB entry 7jyc: Crystal Structure of SARS-CoV-2 Main Protease (3CLpro/Mpro) in Complex with Covalent Inhibitor Narlaprevir
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2020-08-30
Authors: Andi, B., Kumaran, D., Kreitler, D.F., Soares, A.S., Shi, W., Jakoncic, J., Fuchs, M.R., Keereetaweep, J., Shanklin, J., McSweeney, S.
PDB entry 7jyd: Human Liver Receptor Homolog-1 in Complex with 10CA and a Fragment of Tif2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-08-30
Authors: D'Agostino, E.H., Mays, S.G., Ortlund, E.A.
PDB entry 7jye: Human Liver Receptor Homolog-1 in Complex with 9ChoP and a Fragment of Tif2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.551 Å
Deposited: 2020-08-30
Authors: D'Agostino, E.H., Mays, S.G., Ortlund, E.A.
PDB entry 7jyi: Subparticle Map of ZIKV MR-766
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-08-30
Authors: Jose, J., Hafenstein, S.
PDB entry 7jym: CRYSTAL STRUCTURE OF RAR-RELATED ORPHAN RECEPTOR C (NHIS-RORGT(244-487)-L6-SRC1(678-692)) IN COMPLEX WITH A TRICYCLIC SULFONE INVERSE AGONIST
Classification: DNA BINDING PROTEIN/Agonist
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.051 Å
Deposited: 2020-08-31
Authors: Sack, J.
PDB entry 7jyn: Solution NMR structure of human Brd3 ET complexed with NSD3(148-184) peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-08-31
Authors: Aiyer, S., Swapna, G.V.T., Roth, M.J., Montelione, G.T.
PDB entry 7jyo: JAK2 JH2 in complex with JAK064
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16127 Å
Deposited: 2020-08-31
Authors: Puleo, D.E., Krimmer, S.G., Newton, A.S., Schlessinger, J., Jorgensen, W.L.
PDB entry 7jyp: Structure of thioredoxin reductase from the thermophilic eubacterium Thermosipho africanus TCF52B
Classification: OXIDOREDUCTASE
Source organism: Thermosipho africanus (strain TCF52B)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-08-31
Authors: Sahtout, N., Kuttiyatveetil, J.R.A., Sanders, D.A.R.
PDB entry 7jyq: JAK2 JH2 in complex with JAK020
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85942 Å
Deposited: 2020-08-31
Authors: Puleo, D.E., Krimmer, S.G., Newton, A.S., Schlessinger, J., Jorgensen, W.L.
PDB entry 7jyr: hALK in complex with 1-[(1R,2R)-1-(2,4-difluorophenyl)-2-[2-(5-methyl-1H-pyrazol-3-yl)-4-(trifluoromethyl)phenoxy]cyclopropyl]methanamine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2020-08-31
Authors: McGrath, A.P., Zou, H., Lane, W., Saikatendu, K.
PDB entry 7jys: hALK in complex with 3-(3-chlorophenyl)-5-methyl-1H-pyrazole
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2020-08-31
Authors: McGrath, A.P., Zou, H., Lane, W., Saikatendu, K.
PDB entry 7jyt: hALK in complex with 3-(3-methyl-1H-pyrazol-5-yl)pyridine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-08-31
Authors: McGrath, A.P., Zou, H., Lane, W., Saikatendu, K.
PDB entry 7jyu: Crystal Structure of HLA-A*2402 in complex with IYFSPIRVTF, an 10-mer epitope from Influenza B virus
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-09-01
Authors: Nguyen, A.T., Szeto, C., Rossjohn, J., Gras, S.
PDB entry 7jyv: Crystal Structure of HLA A*2402 in complex with YFSPIRVTF, an 9-mer influenza epitope
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2020-09-01
Authors: Gras, S., Nguyen, A.T., Szeto, C., Rossjohn, J.
PDB entry 7jyw: Crystal Structure of HLA A*2402 in complex with TYQWIIRNW, an 9-mer influenza epitope
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-09-01
Authors: Gras, S., Nguyen, A.T., Szeto, C., Rossjohn, J.
PDB entry 7jyx: Crystal Structure of HLA A*2402 in complex with TYQWIIRNWET, an 11-mer epitope from Influenza
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2020-09-01
Authors: Gras, S., Nguyen, A.T., Szeto, C., Rossjohn, J.
PDB entry 7jyy: Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA)pUpUpApApA (Cap-0) and S-Adenosylmethionine (SAM).
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-09-01
Authors: Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7jyz: Solution NMR structure and dynamics of human Brd3 ET in complex with MLV IN CTD
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Moloney murine leukemia virus
Experimental method: SOLUTION NMR
Deposited: 2020-09-01
Authors: Aiyer, S., Liu, G., Swapna, G.V.T., Hao, J., Ma, L.C., Roth, M.J., Montelione, G.T.
PDB entry 7jz0: Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1) and S-Adenosyl-L-homocysteine (SAH).
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-09-01
Authors: Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7jz1: Crystal structure of broadly Plasmodium RIFIN reactive LAIR1-inserted antibody MGC34
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.37 Å
Deposited: 2020-09-01
Authors: Xu, K., Kwong, P.D.
PDB entry 7jz2: Succinate: quinone oxidoreductase SQR from E.coli K12
Classification: ELECTRON TRANSPORT/OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2020-09-01
Authors: Lyu, M., Su, C.-C., Morgan, C.E., Bolla, J.R., Robinson, C.V., Yu, E.W.
PDB entry 7jz3: Osmoporin OmpC from E.coli K12
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2020-09-01
Authors: Lyu, M., Su, C., Morgan, C.E., Bolla, J.R., Robinson, C.V., Yu, E.W.
PDB entry 7jz4: Crystal structure of broadly Plasmodium RIFIN reactive LAIR1-inserted antibody MGD21
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.747 Å
Deposited: 2020-09-01
Authors: Xu, K., Kwong, P.D.
PDB entry 7jz5: Cellular retinol-binding protein 2 (CRBP2) in complex with 1-arachodonoyl-1-thio-glycerol
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.567 Å
Deposited: 2020-09-01
Authors: Silvaroli, J.A., Banarjee, S., Golczak, M.
PDB entry 7jz6: The Cryo-EM structure of the Catalase-peroxidase from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2020-09-01
Authors: Su, C.-C.
PDB entry 7jz7: Dihydrodipicolinate synthase mutant S48F
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2020-09-01
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jz8: Dihydrodipicolinate synthase mutant S48F with lysine in the allosteric site
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2020-09-01
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jz9: Dihydrodipicolinate synthase S48F with pyruvate and succinic semi-aldehyde
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2020-09-01
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jza: Dihydrodipicolinate synthase S48F mutant with lysine in the allosteric site, and pyruvate and succinic semi-aldehyde in the catalytic site
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2020-09-01
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jzb: Dihydrodipicolinate synthase S48W with lysine in the allosteric site, and pyruvate and succinic semi-aldehyde
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2020-09-01
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jzc: Dihydrodipicolinate synthase S48W mutant with lysine in the allosteric site, and pyruvate in the catalytic site
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2020-09-02
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jzd: Dihydrodipicolinate synthase mutation S48W with Lysine in the allosteric site
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2020-09-02
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jze: Dihydrodipicolinate synthase mutant S48W
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-09-02
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jzf: Dihydrodipicolinate synthase mutant S48F with pyruvate in the catalytic site
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2020-09-02
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jzg: Dihydrodipicolinate synthase mutant S48F with lysine in the allosteric site and pyruvate in the catalytic site
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2020-09-02
Authors: Board, A.J., Dobson, R.C.J.
PDB entry 7jzh: The Cryo-EM structure of the Glutamate decarboxylase from Escherichia coli
Classification: LYASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2020-09-02
Authors: Su, C.-C.
PDB entry 7jzi: Crystal structure of LAIR1 ectodomain (from MGD21) in complex with Plasmodium RIFIN (PF3D7_1040300) V2 domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum (isolate NF54)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.707 Å
Deposited: 2020-09-02
Authors: Xu, K., Kwong, P.D.
PDB entry 7jzj: Crystal structure demonstrating CTD-CTD interactions of Zaire Ebola virus VP40 dimer
Classification: VIRAL PROTEIN
Source organism: Zaire ebolavirus (strain Mayinga-76)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2020-09-02
Authors: Norris, M.J., Bornholdt, Z.A., Saphire, E.O.
PDB entry 7jzk: Crystal structure of LAIR1 ectodomain (from MGD21) in complex with Plasmodium RIFIN (PF3D7_0401300) V2 domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum (isolate NF54)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.457 Å
Deposited: 2020-09-02
Authors: Xu, K., Kwong, P.D.
PDB entry 7jzl: SARS-CoV-2 spike in complex with LCB1 (2RBDs open)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2020-09-02
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7jzm: SARS-CoV-2 spike in complex with LCB3 (local refinement of the RBD and LCB3)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-09-02
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7jzn: SARS-CoV-2 spike in complex with LCB3 (2RBDs open)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-09-02
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7jzo: CFTR Associated Ligand (CAL) PDZ domain bound to peptidomimetic LyCALTPP
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2020-09-02
Authors: Gill, N.P., Madden, D.R.
PDB entry 7jzp: CFTR Associated Ligand (CAL) PDZ domain bound to peptidomimetic LyCALBF
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-09-02
Authors: Gill, N.P., Madden, D.R.
PDB entry 7jzq: CFTR Associated Ligand (CAL) PDZ domain bound to peptidomimetic LyCALPMB
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-09-02
Authors: Gill, N.P., Madden, D.R.
PDB entry 7jzr: CFTR Associated Ligand (CAL) PDZ domain bound to peptidomimetic LyCALAEB
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2020-09-02
Authors: Gill, N.P., Madden, D.R.
PDB entry 7jzs: Aminoglycoside N-2'-Acetyltransferase-Ia [AAC(2')-Ia] in complex with CoA
Classification: TRANSFERASE
Source organism: Providencia stuartii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-09-02
Authors: Park, J., Bassenden, A.V., Berghuis, A.M.
PDB entry 7jzt: Low resolution crystal structure of Zaire Ebola virus VP40 in space group P6422
Classification: VIRAL PROTEIN
Source organism: Zaire ebolavirus (strain Mayinga-76)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.77 Å
Deposited: 2020-09-02
Authors: Norris, M.J., Bornholdt, Z.A., Saphire, E.O.
PDB entry 7jzu: SARS-CoV-2 spike in complex with LCB1 (local refinement of the RBD and LCB1)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-09-02
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7jzv: Cryo-EM structure of the BRCA1-UbcH5c/BARD1 E3-E2 module bound to a nucleosome
Classification: LIGASE/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-09-02
Authors: Witus, S.R., Burrell, A.L., Hansen, J.M., Farrell, D.P., Dimaio, F., Kollman, J.M., Klevit, R.E.
PDB entry 7jzw: Cryo-EM structure of CRISPR-Cas surveillance complex with AcrIF4
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa; Pseudomonas phage sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-09-02
Authors: Chang, L., Li, Z., Gabel, C.
PDB entry 7jzx: Cryo-EM structure of CRISPR-Cas surveillance complex with AcrIF7
Classification: HYDROLASE/RNA
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-09-02
Authors: Chang, L., Li, Z., Gabel, C.
PDB entry 7jzy: CryoEM structure of a CRISPR-Cas complex
Classification: HYDROLASE/RNA
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-09-02
Authors: Chang, L., Li, Z., Gabel, C.
PDB entry 7jzz: Cryo-EM structure of CRISPR-Cas surveillance complex with AcrIF14
Classification: HYDROLASE/RNA
Source organism: Pseudomonas aeruginosa; unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-09-02
Authors: Chang, L., Li, Z., Gabel, C.
PDB entry 7k00: Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.98 Å
Deposited: 2020-09-02
Authors: Watson, Z.L., Ward, F.R., Meheust, R., Ad, O., Schepartz, A., Banfield, J.F., Cate, J.H.D.
PDB entry 7k01: Structure of TFIIH in TFIIH/Rad4-Rad23-Rad33 DNA opening complex
Classification: NUCLEAR PROTEIN/Transferase
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-09-02
Authors: van Eeuwen, T., Min, J.H., Murakami, K.
PDB entry 7k02: The crystal structure of a BAK dimer activated by detergent
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2020-09-02
Authors: Birkinshaw, R.W., Czabotar, P.E.
PDB entry 7k03: Crystal structure of the tandem bromodomain (BD1 and BD2) of human TAF1 bound to ATR kinase inhibitor AZD6738
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-09-03
Authors: Karim, M.R., Schonbrunn, E.
PDB entry 7k04: Structure of TFIIH/Rad4-Rad23-Rad33/DNA in DNA opening
Classification: NUCLEAR PROTEIN/DNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.25 Å
Deposited: 2020-09-03
Authors: van Eeuwen, T., Min, J.H., Murakami, K.
PDB entry 7k05: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-09-03
Authors: Thapar, R., Andrew, A.S., Tainer, J.A.
PDB entry 7k06: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-09-03
Authors: Thapar, R., Arvai, A.S., Tainer, J.A.
PDB entry 7k07: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-09-03
Authors: Thapar, R., Arvai, A.S., Tainer, J.A.
PDB entry 7k08: Cryo-EM structure of the nonameric EscV cytosolic domain from the type III secretion system
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2020-09-03
Authors: Majewski, D.D., Lyons, B.J.E., Atkinson, C.E., Strynadka, N.C.J.
PDB entry 7k09: Puromycin N-acetyltransferase in complex with acetyl-CoA
Classification: TRANSFERASE
Source organism: Streptomyces alboniger
Experimental method: X-RAY DIFFRACTION
Resolution: 2.313 Å
Deposited: 2020-09-03
Authors: Caputo, A.T., Newman, J., Adams, T.E., Peat, T.S.
PDB entry 7k0a: Puromycin N-acetyltransferase in complex with acetylated puromycin and CoA
Classification: TRANSFERASE
Source organism: Streptomyces alboniger
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-09-03
Authors: Peat, T.S., Caputo, A.T., Newman, J., Adams, T.E.
PDB entry 7k0b: The internal aldimine form of Salmonella typhimurium Tryptophan Synthase mutant beta-Q114A with cesium ion at the metal coordination site. A random beta-P270L mutation was inserted during PCR step
Classification: LYASE/LYASE INHIBITOR
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2020-09-04
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7k0c: Structure of Secretory IgM Core
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-09-04
Authors: Kumar, N., Arthur, C.P., Ciferri, C., Matsumoto, M.L.
PDB entry 7k0d: Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to mTORC1/2 inhibitor AZD3147
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-09-04
Authors: Karim, M.R., Schonbrunn, E.
PDB entry 7k0e: 1.90 A resolution structure of SARS-CoV-2 3CL protease in complex with deuterated GC376
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-09-04
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Nguyen, H.N., Kim, Y., Chang, K.O., Groutas, W.C.
PDB entry 7k0f: 1.65 A resolution structure of SARS-CoV-2 3CL protease in complex with a deuterated GC376 alpha-ketoamide analog (compound 5)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-09-04
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Nguyen, H.N., Kim, Y., Chang, K.O., Groutas, W.C.
PDB entry 7k0g: 1.85 A resolution structure of SARS-CoV 3CL protease in complex with deuterated GC376
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Human SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-09-04
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Nguyen, H.N., Kim, Y., Chang, K.O., Groutas, W.C.
PDB entry 7k0h: 1.70 A resolution structure of SARS-CoV 3CL protease in complex with a deuterated GC376 alpha-ketoamide analog (compound 5)
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Human SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-09-04
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Nguyen, H.N., Kim, Y., Chang, K.O., Groutas, W.C.
PDB entry 7k0i: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0j: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa protomer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0k: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa, 3KS-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0l: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa, myriocin-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0m: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa/ORMDL3, class 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0n: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa/ORMDL3, class 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0o: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa/ORMDL3, class 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0p: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa/ORMDL3, class 4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0q: Human serine palmitoyltransferase complex SPTLC1/SPLTC2/ssSPTa/ORMDL3, myriocin-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-09-04
Authors: Wang, Y., Niu, Y., Zhang, Z., Zhao, H., Myasnikov, A., Kalathur, R., Lee, C.H.
PDB entry 7k0r: Nucleotide bound SARS-CoV-2 Nsp15
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-09-04
Authors: Pillon, M.C., Stanley, R.E.
PDB entry 7k0s: Cryo-EM structure of rabbit RyR1 in the presence of Mg2+ and AMP-PCP in nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2020-09-05
Authors: Nayak, A.R., Samso, M.
PDB entry 7k0t: Cryo-EM structure of rabbit RyR1 in the presence of AMP-PCP in nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-09-05
Authors: Nayak, A.R., Samso, M.
PDB entry 7k0u: Crystal structure of the second bromodomain (BD2) of human TAF1 bound to PLK1 kinase inhibitor BI2536
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2020-09-06
Authors: Karim, M.R., Schonbrunn, E.
PDB entry 7k0v: Crystal structure of bRaf in complex with inhibitor GNE-0749
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2020-09-06
Authors: Yin, J., Eigenbrot, C.E., Wang, W.
PDB entry 7k0w: The crystal structure of the 2009/H1N1/California PA endonuclease (construct with truncated loop 51-72) in complex with Baloxavir acid
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Influenza A virus (strain swl A/California/04/2009 H1N1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2020-09-06
Authors: Kumar, G., White, S.W.
PDB entry 7k0x: Marsupial T cell receptor Spl_145
Classification: IMMUNE SYSTEM
Source organism: Monodelphis domestica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-09-06
Authors: Wegrecki, M., Kannan Sivaraman, K., Le Nours, J., Rossjohn, J.
PDB entry 7k0y: Cryo-EM structure of activated-form DNA-PK (complex VI)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2020-09-06
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k0z: Marsupial T cell receptor Spl_157
Classification: IMMUNE SYSTEM
Source organism: Monodelphis domestica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-09-06
Authors: Wegrecki, M., Kannan Sivaraman, K., Le Nours, J., Rossjohn, J.
PDB entry 7k10: CryoEM structure of activated-form FATKIN domain of DNA-PK
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-09-06
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k11: CryoEM structure of inactivated-form FATKIN domain of DNA-PK
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2020-09-06
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k12: ACMSD in complex with diflunisal
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2020-09-07
Authors: Yang, Y., Liu, A.
PDB entry 7k13: ACMSD in complex with diflunisal derivative 14
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2020-09-07
Authors: Yang, Y., Liu, A.
PDB entry 7k14: Ternary soak structure of alkanesulfonate monooxygenase MsuD from Pseudomonas fluorescens with FMN and methanesulfonate
Classification: FLAVOPROTEIN, OXIDOREDUCTASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-09-07
Authors: Liew, J.J.M., Dowling, D.P., El Saudi, I.M.
PDB entry 7k15: Crystal structure of the Human Leukotriene B4 Receptor 1 in Complex with Selective Antagonist MK-D-046
Classification: MEMBRANE PROTEIN
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303); Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2020-09-07
Authors: Michaelian, N., Han, G.W., Cherezov, V.
PDB entry 7k16: Tamana Bat Virus xrRNA1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-09-07
Authors: Jones, R.A., Kieft, J.S.
PDB entry 7k17: Re-refined crystal structure of DNA-dependent protein kinase catalytic subunit complexed with Ku80 C-terminal helix
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.3 Å
Deposited: 2020-09-07
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k18: Cardiac Sodium channel with toxin bound
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Leiurus hebraeus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-09-07
Authors: Jiang, D., Catterall, W.A.
PDB entry 7k19: CryoEM structure of DNA-PK catalytic subunit complexed with DNA (Complex I)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-09-07
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k1a: TtgR quadruple mutant (C137I I141W M167L F168Y)
Classification: TRANSCRIPTION
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-09-07
Authors: Bingman, C.A., Nishikawa, K.K., Smith, R.W., Raman, S.
PDB entry 7k1b: CryoEM structure of DNA-PK catalytic subunit complexed with DNA (Complex II)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-09-07
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k1c: TtgR in complex with resveratrol
Classification: TRANSCRIPTION
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-09-07
Authors: Bingman, C.A., Nishikawa, K.K., Smith, R.W., Raman, S.
PDB entry 7k1d: Crystal structure of human insulin degrading enzyme (IDE) in complex with compound BDM_77291
Classification: HYDROLASE/HYDROLASE INHBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2020-09-07
Authors: Liang, W.G., Deprez, R., Bosc, D., Tang, W.
PDB entry 7k1e: Crystal structure of human insulin degrading enzyme (IDE) in complex with compound BDM_88646
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-09-07
Authors: Liang, W.G., Deprez, R., Bosc, D., Tang, W.
PDB entry 7k1f: Crystal structure of human insulin degrading enzyme (IDE) in complex with compound BDM_88558
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-09-07
Authors: Liang, W.G., Deprez, R., Bosc, D., Tang, W.
PDB entry 7k1h: EGFR L858R/V948R in complex with osimertinib and allosteric inhibitor JBJ-09-063
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.602 Å
Deposited: 2020-09-07
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7k1i: EGFR kinase (L858R/V948R) in complex with allosteric inhibitor JBJ-09-063
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.202 Å
Deposited: 2020-09-07
Authors: Beyett, T.S., Eck, M.J.
PDB entry 7k1j: CryoEM structure of inactivated-form DNA-PK (Complex III)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-09-07
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k1k: CryoEM structure of inactivated-form DNA-PK (Complex IV)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2020-09-07
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k1l: Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-2',3'-Vanadate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-09-07
Authors: Kim, Y., Maltseva, N., Jedrzejczak, R., Endres, M., Welk, L., Chang, C., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7k1m: Peptide from stony coral Heliofungia actiniformis: Hact-1
Classification: UNKNOWN FUNCTION
Source organism: Heliofungia actiniformis
Experimental method: SOLUTION NMR
Deposited: 2020-09-08
Authors: Daly, N.L., Schmidt, C.A.
PDB entry 7k1n: CryoEM structure of inactivated-form DNA-PK (Complex V)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-09-08
Authors: Chen, X., Gellert, M., Yang, W.
PDB entry 7k1o: Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-3',5'-Diphosphate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-09-08
Authors: Kim, Y., Maltseva, N., Jedrzejczak, R., Endres, M., Welk, L., Chang, C., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7k1p: Crystal structure of the second bromodomain (BD2) of human TAF1 bound to bromosporine
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-09-08
Authors: Karim, M.R., Schonbrunn, E.
PDB entry 7k1q: Solution structure of lantibiotic from Paenibacillus sp.
Classification: ANTIMICROBIAL PROTEIN
Source organism: Paenibacillus sp.
Experimental method: SOLUTION NMR
Deposited: 2020-09-08
Authors: Karczewski, J., Diehl, C.
PDB entry 7k1r: X-ray Structure of an Enterobacter GH43 Beta-Xylosidase: EcXyl43 F507A mutant
Classification: HYDROLASE
Source organism: Enterobacter sp. enrichment culture clone nf1B6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-09-08
Authors: Briganti, L., Capetti, C.C.M., Polikarpov, I.
PDB entry 7k1s: The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusion.
Classification: VIRAL PROTEIN
Source organism: Human herpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-09-08
Authors: Oliver, S.L.
PDB entry 7k1u: Crystal Structure of SrtB-anchored Collagen-binding Adhesin Fragment (residues 206-565) from Clostridioides difficile strain 630
Classification: CELL ADHESION
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-09-08
Authors: Minasov, G., Shuvalova, L., Rosas-Lemus, M., Wiersum, G., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7k1v: Partial open state of Mycobacterium tuberculosis zinc metalloprotease 1
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2020-09-08
Authors: Mancl, J.M., Liang, W.G., Zhao, M., Tang, W.
PDB entry 7k1w: PIKfyve/Fig4/Vac14 complex centered on Fig4 - map3
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2020-09-08
Authors: Lees, J.A., Reinisch, K.M., Li, P.
PDB entry 7k1y: PIKfyve/Fig4/Vac14 complex centered on Vac14 - map1
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.25 Å
Deposited: 2020-09-08
Authors: Lees, J.A., Reinisch, K.M., Li, P.
PDB entry 7k20: Cryo-EM structure of pyrene-labeled ADP-actin filaments
Classification: CYTOSOLIC PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-09-08
Authors: Chou, S.Z., Pollard, T.D.
PDB entry 7k21: Cryo-EM structure of pyrene-labeled ADP-Pi-actin filaments
Classification: CYTOSOLIC PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-09-08
Authors: Chou, S.Z., Pollard, T.D.