LiteFold/PDB huggingface dataset:
PDB entry 9b2m: Hemagglutinin H1 New Caledonia 1999 in complex with monoclonal antibody Fab 43_S0008
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Influenza A virus; Mus sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-03-15
Authors: Torrents de la Pena, A., de Paiva Froes Rocha, R., Ward, A.B., Ataca, S., Kanekiyo, M.
PDB entry 9b2n: Structure of the quorum quenching lactonase GcL D122N mutant - monometal center
Classification: HYDROLASE
Source organism: Parageobacillus caldoxylosilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-15
Authors: Corbella, M., Bravo, J.A., Demkiv, A.O., Calixto, A.R., Sompiyachoke, K., Bergonzi, C., Kamerlin, S.C.L., Elias, M.
PDB entry 9b2o: Structure of the quorum quenching lactonase GcL bound to the hydrolysis product of N-octanoyl-L-homoserine lactone
Classification: HYDROLASE/PRODUCT
Source organism: Parageobacillus caldoxylosilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-03-15
Authors: Corbella, M., Bravo, J.A., Demkiv, A.O., Calixto, A.R., Sompiyachoke, K., Bergonzi, C., Kamerlin, S.C.L., Elias, M.
PDB entry 9b2p: Structure of the quorum quenching lactonase GcL D122N mutant - bimetallic metal center - C2 space group
Classification: HYDROLASE
Source organism: Parageobacillus caldoxylosilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-03-15
Authors: Corbella, M., Bravo, J.A., Demkiv, A.O., Calixto, A.R., Sompiyachoke, K., Bergonzi, C., Kamerlin, S.C.L., Elias, M.
PDB entry 9b2q: Crystal Structure of Pantothenate Synthetase from Candida albicans.
Classification: LIGASE
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-15
Authors: Regan, J., Avad, K.A., Alaidi, O., Seetharaman, J., Palmer, G.E., Hevener, K.E.
PDB entry 9b2s: Haspin bound to nucleosome in position 1
Classification: DNA BINDING PROTEIN/Transferase/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-03-16
Authors: Hicks, C.W., Wolberger, C.
PDB entry 9b2t: Haspin bound to nucleosome in position 2
Classification: DNA BINDING PROTEIN/Transferase/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-03-16
Authors: Hicks, C.W., Wolberger, C.
PDB entry 9b2u: Haspin bound to H3 tail
Classification: DNA BINDING PROTEIN/Transferase
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2024-03-16
Authors: Hicks, C.W., Wolberger, C.
PDB entry 9b2v: SARS CoV-2 Spike protein Ectodomain with internal tag, 1RBD-up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2024-03-17
Authors: Singh, S., Hasan, S.S.
PDB entry 9b2w: PIV3 HN with Fab 13
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human respirovirus 3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2024-03-17
Authors: Durie, I.A., Mousa, J.J.
PDB entry 9b2x: Cryo-EM structure of Prefusion RSV F (RSV220975)
Classification: VIRAL PROTEIN
Source organism: Human orthopneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-03-17
Authors: Yu, X., Langedijk, J.P.M.
PDB entry 9b2y: Kynurenine monooxygenase from Pseudomonas fluorescens complexed with 4-chlorophenylacetyltetrazole
Classification: FLAVOPROTEIN/INHIBITOR
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-03-17
Authors: Phillips, R.S., Ma, W.
PDB entry 9b2z: Actin-bound Legionella pneumophila AMPylase LnaB with AMPylated catalytic histidine
Classification: TRANSFERASE
Source organism: Homo sapiens; Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-03-18
Authors: Zhang, Z., Das, C.
PDB entry 9b31: Cryo-EM structure of yeast (Nap1)2-Kap114-H2A-H2B
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-18
Authors: Jiou, J., Fung, H.Y.J., Chook, Y.M.
PDB entry 9b33: Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Classification: MEMBRANE PROTEIN
Source organism: Canavalia ensiformis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2024-03-18
Authors: Nadezhdin, K.D., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9b34: Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Classification: MEMBRANE PROTEIN
Source organism: Canavalia ensiformis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-03-18
Authors: Nadezhdin, K.D., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9b35: Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-03-18
Authors: Nadezhdin, K.D., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9b36: Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
Classification: MEMBRANE PROTEIN
Source organism: Canavalia ensiformis; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.29 Å
Deposited: 2024-03-18
Authors: Nadezhdin, K.D., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9b37: Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map.
Classification: MEMBRANE PROTEIN
Source organism: Canavalia ensiformis; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.66 Å
Deposited: 2024-03-18
Authors: Nadezhdin, K.D., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9b38: Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-03-18
Authors: Nadezhdin, K.D., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9b39: Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2024-03-18
Authors: Nadezhdin, K.D., Gangwar, S.P., Sobolevsky, A.I.
PDB entry 9b3a: filament of type 1 KD-mxyl miniature tau macrocycle derived from 4R tauopathic fold
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-18
Authors: Xu, X., Angera, J.I., Rajewski, H.B., Jiang, W., Del Valle, R.J.
PDB entry 9b3b: Structure of TDP1 complexed with compound IB09
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2024-03-18
Authors: Lountos, G.T., Zhao, X.Z., Barakat, I., Wang, W., Agama, K., Al Mahmud, M.R., Pommier, Y., Burke, T.R.
PDB entry 9b3c: type 2 KD-mxyl filament of miniature tau macrocycle derived from 4R tauopathic fold
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-03-18
Authors: Xu, X., Angera, J.I., Rajewski, H.B., Jiang, W., Del Valle, R.J.
PDB entry 9b3d: mDia1 in the middle of F-actin
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-03-19
Authors: Palmer, N.J., Barrie, K.R., Dominguez, R.
PDB entry 9b3e: Crystal structure of a Slam-dependent surface lipoprotein, PmSLP, in Pasteurella multocida
Classification: MEMBRANE PROTEIN
Source organism: Pasteurella multocida 36950
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-19
Authors: Lai, C.H.R., Shah, M., Nguyen, Q.H., Moraes, T.F.
PDB entry 9b3f: Cryo-EM structure of yeast (Nap1)2-H2A-H2B-Kap114
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2024-03-19
Authors: Jiou, J., Fung, H.Y.J., Chook, Y.M.
PDB entry 9b3g: Human Notch-1 EGFs 21-23
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-03-19
Authors: Johnson, S., Sheppard, D., Handford, P.A., Lea, S.M.
PDB entry 9b3h: Structure of a complex between Pasteurella multocida surface lipoprotein, PmSLP-1, and bovine complement factor I
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Pasteurella multocida 36950
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-03-19
Authors: Nguyen, Q.H., Norris, M.J., Moraes, T.F.
PDB entry 9b3i: Cryo-EM structure of yeast (Nap1)2-H2A-H2B-Kap114-RanGTP
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-03-19
Authors: Fung, H.Y.J., Jiou, J., Chook, Y.M.
PDB entry 9b3j: Artemia franciscana ATP synthase state 2 (composite structure), pH 8.0
Classification: MEMBRANE PROTEIN
Source organism: Artemia franciscana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-03-19
Authors: Mnatsakanyan, N., Mello, J.F.R.
PDB entry 9b3k: NorA in complex with Fab36 (NorA-BRIL fusion)
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2024-03-19
Authors: Xie, P., Li, Y., Kuang, H., Wang, D.N., Traaseth, N.J.
PDB entry 9b3l: NorA in occluded conformation (NorA-BRIL fusion)
Classification: TRANSPORT PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-03-19
Authors: Xie, P., Li, Y., Kuang, H., Wang, D.N., Traaseth, N.J.
PDB entry 9b3m: NorA in inward-open conformation (NorA-BRIL fusion)
Classification: TRANSPORT PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-03-19
Authors: Xie, P., Li, Y., Kuang, H., Wang, D.N., Traaseth, N.J.
PDB entry 9b3n: Human Notch-1 EGFs 20-24
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-03-19
Authors: Johnson, S., Suckling, R., Handford, P.A., Lea, S.M.
PDB entry 9b3o: NorA in inward-occluded conformation (NorA-BRIL fusion)
Classification: TRANSPORT PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-03-19
Authors: Xie, P., Li, Y., Kuang, H., Wang, D.N., Traaseth, N.J.
PDB entry 9b3p: The cryo-EM structure of the H2A.Z-H3.3 double-variant nucleosome
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; Mus musculus; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-19
Authors: Tan, D., Sokolova, V.
PDB entry 9b3q: The structure of the human cardiac F-actin mutant A331P
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-03-20
Authors: Doran, M.H., Sousa, D., Rynkiewicz, M.J., Lehman, W., Cammarato, A.
PDB entry 9b3r: The structure of human cardiac F-actin
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-03-20
Authors: Doran, M.H., Sousa, D., Rynkiewicz, M.J., Lehman, W., Cammarato, A.
PDB entry 9b3s: Crystal structure of casein kinase 1 delta 1 with tethered phosphorylated tail
Classification: TRANSFERASE, CIRCADIAN CLOCK PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-03-20
Authors: Harold, R.L., Yaitanes, N., Tripathi, S.T., Partch, C.L.
PDB entry 9b3t: Octameric prenyltransferase domain of linkerless Fusicoccadiene synthase with C2 symmetry without associated cyclase domains
Classification: TRANSFERASE
Source organism: Phomopsis amygdali
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-03-20
Authors: Wenger, E.S., Schultz, K., Marmorstein, R., Christianson, D.W.
PDB entry 9b3u: Rat TRPV2 WT bound to probenecid
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-03-20
Authors: Rocereta, J.A., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 9b3v: Rat TRPV2 WT in the presence of probenecid and 2-APB
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-03-20
Authors: Rocereta, J.A., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 9b3w: Rat TRPV2 E724A/D725A Apo
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-03-20
Authors: Pumroy, R.A., Rocereta, J.A., Moiseenkova-Bell, V.Y.
PDB entry 9b3x: Rat TRPV2 E724A/D725A bound to 2-APB
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-20
Authors: Pumroy, R.A., Rocereta, J.A., Moiseenkova-Bell, V.Y.
PDB entry 9b3y: Rat TRPV2 E724A/D725A bound to probenecid
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-20
Authors: Rocereta, J.A., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 9b3z: Rat TRPV2 E724A/D725A bound to probenecid and 2-APB
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-20
Authors: Pumroy, R.A., Rocereta, J.A., Moiseenkova-Bell, V.Y.
PDB entry 9b40: Pseudomonas phage Pa193 5-fold vertex (capsid, decorating, and scaffolding proteins)
Classification: VIRAL PROTEIN
Source organism: Pseudomonas virus Pa193
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-03-20
Authors: Iglesias, S.M., Cingolani, G.
PDB entry 9b41: Pseudomonas phage Pa193 Neck (portal and head-to-tail proteins)
Classification: VIRAL PROTEIN
Source organism: Pseudomonas virus Pa193
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-20
Authors: Iglesias, S.M., Cingolani, G.
PDB entry 9b42: Pseudomonas phage Pa193 neck and extended tail (collar, gateway, tail tube, and sheath proteins)
Classification: VIRAL PROTEIN
Source organism: Pseudomonas virus Pa193
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-03-20
Authors: Iglesias, S.M., Cingolani, G.
PDB entry 9b43: Mycolicibacterium smegmatis MmpL4 structure
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-03-20
Authors: Maharjan, R., Klenotic, P.A., Zhang, Z., Yu, E.W.
PDB entry 9b44: Crystal structure of mAb 8-24 Fab, a VRC01-like HIV-1 antibody
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-03-20
Authors: Kher, G., Hurlburt, N., Pancera, M.
PDB entry 9b45: Pseudomonas phage Pa193 baseplate complex and tail fiber
Classification: VIRAL PROTEIN
Source organism: Pseudomonas virus Pa193
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-20
Authors: Iglesias, S.M., Cingolani, G.
PDB entry 9b46: Mycolicibacterium smegmatis MmpL5 structure
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-20
Authors: Maharjan, R., Klenotic, P.A., Zhang, Z., Yu, E.W.
PDB entry 9b47: Y328F variant of P. indica phosphate transporter
Classification: TRANSPORT PROTEIN
Source organism: Serendipita indica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2024-03-20
Authors: Gupta, M., Finer-Moore, J., Stroud, R.M.
PDB entry 9b48: Asp324Glu variant of phosphate transporter PiPT from Piriformospora indica
Classification: TRANSPORT PROTEIN
Source organism: Serendipita indica
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2024-03-20
Authors: Gupta, M., Finer-Moore, J., Stroud, R.M.
PDB entry 9b49: K459Q variant of P. indica phosphate transporter
Classification: TRANSPORT PROTEIN
Source organism: Serendipita indica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-03-20
Authors: Gupta, M., Finer-Moore, J., Stroud, R.M.
PDB entry 9b4e: Structure of wild type human PSS1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-20
Authors: Long, T., Li, X.
PDB entry 9b4f: Structure of human PSS1-P269S
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-03-20
Authors: Long, T., Li, X.
PDB entry 9b4g: Structure of inhibitor-bound human PSS1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-03-20
Authors: Long, T., Li, X.
PDB entry 9b4h: Chlamydomonas reinhardtii mastigoneme filament
Classification: STRUCTURAL PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-20
Authors: Dai, J., Ma, M., Zhang, R., Brown, A.
PDB entry 9b4i: Filament of D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Classification: UNKNOWN FUNCTION
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-03-20
Authors: Hou, K., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 9b4j: Filament of D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Classification: UNKNOWN FUNCTION
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-03-20
Authors: Hou, K., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 9b4k: Filament of D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Classification: UNKNOWN FUNCTION
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-03-20
Authors: Hou, K., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 9b4l: Filament of Tau in complex with D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-20
Authors: Hou, K., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 9b4m: Filament of Tau in complex with D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-20
Authors: Hou, K., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 9b4n: Filament of Tau in complex with D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-03-21
Authors: Hou, K., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 9b4o: Alzheimer's Tau Paired Helical Filaments, determined by CryoEM, before addition of D-peptide disaggregants
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-03-21
Authors: Hou, K., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 9b4p: Tetramer Formation of the BCL11A ZF0 Domain
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2024-03-21
Authors: Yin, M., Tenglin, K., Orkin, S.H.
PDB entry 9b4q: Crystal structure of RRAS2 (RAS-Related protein) bound to GMPPNP
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2024-03-21
Authors: Czyzyk, D.J., Simanshu, D.K.
PDB entry 9b4r: Crystal structure of MRAS bound to GMPPNP
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-21
Authors: Czyzyk, D.J., Simanshu, D.K.
PDB entry 9b4s: Crystal structure of the RRAS2-p110alpha complex
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-03-21
Authors: Czyzyk, D.J., Simanshu, D.K.
PDB entry 9b4t: Crystal structure of the MRAS-p110alpha complex
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-03-21
Authors: Czyzyk, D.J., Simanshu, D.K.
PDB entry 9b4u: Crystal structure of p110alpha-RBD covalently bound to a breaker compound BBO-10203 via Cys242
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-03-21
Authors: Czyzyk, D.J., Simanshu, D.K.
PDB entry 9b4v: 4F-Trp labeled Oscillatoria Agardhii Agglutinin (OAA)
Classification: SUGAR BINDING PROTEIN
Source organism: Oscillatoria agardhii
Experimental method: SOLID-STATE NMR
Deposited: 2024-03-21
Authors: Runge, B.R., Zadorozhnyi, R.R., Quinn, C.M., Russell, R.W., Lu, M., Antolinez, S., Struppe, J., Schwieters, C.D., Byeon, I.L., Hadden-Perilla, J., Gronenborn, A.M., Polenova, T.
PDB entry 9b4w: 4F-Trp labeled Oscillatoria Agardhii Agglutinin (OAA)
Classification: SUGAR BINDING PROTEIN
Source organism: Oscillatoria agardhii
Experimental method: SOLID-STATE NMR
Deposited: 2024-03-21
Authors: Runge, B.R., Zadorozhnyi, R.R., Quinn, C.M., Russell, R.W., Lu, M., Antolinez, S., Struppe, J., Schwieters, C.D., Byeon, I.L., Hadden-Perilla, J., Gronenborn, A.M., Polenova, T.
PDB entry 9b4x: SARS CoV-2 full-length spike protein with Lys1269Ala and His1271Ala substitutions in the coatomer binding motif, 1RBD-up conformation (SPIKE-AXA)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-03-21
Authors: Singh, S., Hasan, S.S.
PDB entry 9b4y: Cryo-EM structure of importin alpha-1/beta bound to TDP-43
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-03-21
Authors: Ko, Y., Cingolani, G.
PDB entry 9b4z: E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-03-21
Authors: Mattingly, J.M., Dey, D., Zelinskaya, N., Dunham, C.M., Conn, G.L.
PDB entry 9b50: E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-21
Authors: Mattingly, J.M., Dey, D., Zelinskaya, N., Dunham, C.M., Conn, G.L.
PDB entry 9b51: E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-03-21
Authors: Mattingly, J.M., Dey, D., Zelinskaya, N., Dunham, C.M., Conn, G.L.
PDB entry 9b52: RhAAV4282 Empty Capsid
Classification: VIRAL PROTEIN
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-03-22
Authors: Dagotto, G., Jenni, S., Li, Z., Barouch, D.H.
PDB entry 9b53: RhAAV4282 Full Capsid
Classification: VIRAL PROTEIN
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-03-22
Authors: Dagotto, G., Jenni, S., Li, Z., Barouch, D.H.
PDB entry 9b54: Biased agonist bound CB1-Gi structure
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-03-22
Authors: Rangari, V.A., O'Brien, E.S., Kobilka, B.K., Krishna Kumar, K., Majumdar, S.
PDB entry 9b55: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 1
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b56: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b57: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 3
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b58: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 4
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b59: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 5
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5a: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 6
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5b: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 7
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5c: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - consensus map and model
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5d: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from consensus
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5e: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from consensus
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5f: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 1 map and model (Ub(A)/ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5g: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 2 map and model (Ub(A)/ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5h: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 3 map and model (Ub(A)-AMP/PPi/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5i: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 4 map and model (Ub(A)-AMP/PPi/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5j: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 5 map and model (Ub(A)-AMP)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5k: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (Ub(A)/ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5l: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (Ub(A)-AMP)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5m: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - consensus map and model
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5n: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from consensus
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5o: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from consensus
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5p: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 1 map and model (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5q: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 2 map and model (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5r: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 3 map and model (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5s: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 4 map and model (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5t: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 5 map and model (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5u: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5v: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 1 (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5w: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 5 (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5x: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (ATP/Mg)
Classification: LIGASE
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2024-03-22
Authors: Kochanczyk, T., Lima, C.D.
PDB entry 9b5y: Cryo-EM structure of the LAPTH-bound PTH1R in complex with Gq
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-03-22
Authors: Zhang, X., Liu, H., Zhang, C., Vilardaga, J.-P.
PDB entry 9b5z: GluA2 flip Q in complex with TARPgamma2 at pH8, consensus structure of LBD-TMD-TARPgamma2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b60: GluA2 flip Q in complex with TARPgamma2 at pH8, consensus structure of TMD-TARPgamma2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b61: GluA2 flip Q in complex with TARPgamma2 at pH5, consensus structure of LBD-TMD-TARPgamma2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b62: Human RANBP2/RAN(GTP)/RANGAP1-SUMO1/UBC9/CRM1/RAN(GTP) - composite map and model
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-03-23
Authors: Lima, C.D., DiMattia, M.A.
PDB entry 9b63: GluA2 flip Q in complex with TARPgamma2 at pH5, consensus structure of TMD-TARPgamma2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b64: GluA2 flip Q in complex with TARPgamma2 at pH5, class23, structure of LBD-TMD-TARPgamma2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b65: Biased agonist bound CB1-Gi structure
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-03-23
Authors: Rangari, V.A., O'Brien, E.S., Kobilka, B.K., Krishna Kumar, K., Majumdar, S.
PDB entry 9b67: GluA2 flip Q in complex with TARPgamma2 at pH8, class1, structure of LBD-TMD-TARPgamma2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b68: GluA2 flip Q in complex with TARPgamma2 at pH8, class1, structure of NTD
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b69: GluA2 flip Q in complex with TARPgamma2 at pH8, class12, structure of NTD
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b6a: GluA2 flip Q in complex with TARPgamma2 at pH8, class12, structure of LBD-TMD-TARPgamma2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-03-23
Authors: Nakagawa, T., Greger, I.H.
PDB entry 9b6c: Human asparagine synthetase Arg-142 to Ile-142 (R142I) variant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-03-25
Authors: Coricello, A., Nardone, A., Lupia, A., Gratteri, C., Vos, M., Chaptal, V., Alcaro, S., Zhu, W., Takagi, Y., Richards, N.
PDB entry 9b6d: Cryo-EM structure of the mouse TRPM8 channel in the ligand-free desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-25
Authors: Yin, Y., Park, C.-G., Zhang, F., Fedor, J., Feng, S., Suo, Y., Im, W., Lee, S.-Y.
PDB entry 9b6e: Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist TC-I 2014
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-03-25
Authors: Yin, Y., Park, C.-G., Zhang, F., Fedor, J., Feng, S., Suo, Y., Im, W., Lee, S.-Y.
PDB entry 9b6f: Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist AMG2850
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-03-25
Authors: Yin, Y., Park, C.-G., Zhang, F., Fedor, J., Feng, S., Suo, Y., Im, W., Lee, S.-Y.
PDB entry 9b6g: Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist AMTB
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-03-25
Authors: Yin, Y., Park, C.-G., Zhang, F., Fedor, J., Feng, S., Suo, Y., Im, W., Lee, S.-Y.
PDB entry 9b6h: Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist TC-I 2014 and the cooling agonist C3
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-03-25
Authors: Yin, Y., Park, C.-G., Zhang, F., Fedor, J., Feng, S., Suo, Y., Im, W., Lee, S.-Y.
PDB entry 9b6i: Cryo-EM structure of the avian great tit TRPM8 channel in complex with the antagonist TC-I 2014
Classification: MEMBRANE PROTEIN
Source organism: Parus major
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-03-25
Authors: Yin, Y., Park, C.-G., Zhang, F., Fedor, J., Feng, S., Suo, Y., Im, W., Lee, S.-Y.
PDB entry 9b6j: Cryo-EM structure of the mouse TRPM8 channel in complex with PI(4,5)P2 and Ca2+
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-03-25
Authors: Yin, Y., Park, C.-G., Zhang, F., Fedor, J., Feng, S., Suo, Y., Im, W., Lee, S.-Y.
PDB entry 9b6k: Cryo-EM structure of the mouse TRPM8 channel in complex with Ca2+ in the absence of PI(4,5)P2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2024-03-25
Authors: Yin, Y., Park, C.-G., Zhang, F., Fedor, J., Feng, S., Suo, Y., Im, W., Lee, S.-Y.
PDB entry 9b6l: Apo Decameric Rubisco from Candidatus Methanofastidiosum methylthiophilus
Classification: LYASE
Source organism: Candidatus Methanofastidiosum methylthiophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2024-03-25
Authors: Kaeser, B.P., Liu, A.K., Shih, P.M.
PDB entry 9b6m: Cryo-EM structure and molecular assembly of the BoNT-like toxin PG1 complex from Paeniclostridium ghonii
Classification: TOXIN
Source organism: Paraclostridium ghonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-25
Authors: Yin, L., Dong, M.
PDB entry 9b6n: Fab1-1 in complex with the capsid of Adeno-associated virus type 9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Adeno-associated virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-03-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9b6o: Fab1-2 in complex with the capsid of Adeno-associated virus type 9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Adeno-associated virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-03-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9b6p: Fab1-3 in complex with the capsid of Adeno-associated virus type 9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Adeno-associated virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-03-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9b6q: Fab1-4 in complex with the capsid of Adeno-associated virus type 9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Adeno-associated virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-03-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9b6r: Fab1-5 in complex with the capsid of Adeno-associated virus type 9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Adeno-associated virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-03-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9b6s: Fab1-6 in complex with the capsid of Adeno-associated virus type 9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Adeno-associated virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-03-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9b6t: Fab1-7 in complex with the capsid of Adeno-associated virus type 9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Adeno-associated virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-03-25
Authors: Mietzsch, M., McKenna, R.
PDB entry 9b6u: Envelope protein ASU of YFV-17D in complex with 2C9 Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Mus musculus; Yellow fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-03-26
Authors: Bibby, S., Jung, J., Modhiran, N., Watterson, D.
PDB entry 9b6v: Envelope protein ASU of YFV-ES504 with YFV-17D DIII
Classification: VIRUS
Source organism: Yellow fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-26
Authors: Bibby, S., Jung, J., Modhiran, N., Watterson, D.
PDB entry 9b6w: Envelope protein ASU of YFV-ES504 with YFV-17D DIII in complex with 2C9 Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Mus musculus; Yellow fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-03-26
Authors: Bibby, S., Jung, J., Modhiran, N., Watterson, D.
PDB entry 9b6x: Envelope protein ASU of YFV-Asibi with YFV-17D DIII
Classification: VIRUS
Source organism: Yellow fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-03-26
Authors: Bibby, S., Jung, J., Modhiran, N., Watterson, D.
PDB entry 9b6y: Envelope protein ASU of YFV-ES504 T380R
Classification: VIRUS
Source organism: Yellow fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-26
Authors: Bibby, S., Jung, J., Modhiran, N., Watterson, D.
PDB entry 9b6z: NMR solution structure of the 1:1 complex of a platinum(II) compound bound to Myc1234 G-quadruplex
Classification: DNA
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-03-26
Authors: Liu, W., Mao, Z.W.
PDB entry 9b70: Cryo-EM structure of MraY in complex with analogue 2
Classification: TRANSFERASE
Source organism: Aquifex aeolicus VF5; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-03-26
Authors: Hao, A., Lee, S.-Y.
PDB entry 9b71: Cryo-EM structure of MraY in complex with analogue 3
Classification: TRANSFERASE
Source organism: Aquifex aeolicus VF5; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-26
Authors: Hao, A., Lee, S.-Y.
PDB entry 9b72: Rec2 Domain from G. stearothermophilus Cas9
Classification: RNA BINDING PROTEIN
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-03-26
Authors: D'Ordine, A.M., Belato, H.B., Lisi, G.P., Jogl, G.
PDB entry 9b73: Cryo-EM structure of the desensitised ATP-bound human P2X1 receptor
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.96 Å
Deposited: 2024-03-27
Authors: Felix, M.B., Alisa, G., Hariprasad, V., Jesse, I.M., David, M.T.
PDB entry 9b74: Crystal structure of humanized 44H10 Fab Version 14
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2024-03-27
Authors: Kassardjian, A., Julien, J.P.
PDB entry 9b75: Crystal structure of humanized 44H10 Fab Version 17
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-03-27
Authors: Kassardjian, A., Julien, J.P.
PDB entry 9b76: Crystal structure of humanized 44H10 Fab Version 21
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-03-27
Authors: Kassardjian, A., Julien, J.P.
PDB entry 9b77: Cryo-EM Structure of the Glycosyltransferase ArnC from Salmonella enterica in the Apo State Determined on Krios microscope
Classification: TRANSFERASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-03-27
Authors: Ashraf, K.U., Punetha, A., Petrou, V.I.
PDB entry 9b78: Mycobacterium tuberculosis CoaX Homohexamer
Classification: CYTOSOLIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-03-27
Authors: Chen, J., Ekiert, D.C., Bhabha, G.
PDB entry 9b79: Mycobacterium tuberculosis CoaX Homotetramer
Classification: CYTOSOLIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-03-27
Authors: Chen, J., Ekiert, D.C., Bhabha, G.
PDB entry 9b7a: Crystal structure of peroxiredoxin 1 with RA
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-03-27
Authors: Wu, Y., Xu, H., Luo, C.
PDB entry 9b7b: Crystal structure of humanized 44H10 Fab Version 22 in complex with HLA-DR (HLA-DRA*01:01/HLA-DRB1*04:01)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2024-03-27
Authors: Kassardjian, A., Julien, J.P.