LiteFold/PDB huggingface dataset:
PDB entry 7kse: Crystal structure of Prototype Foamy Virus Protease-Reverse Transcriptase CSH mutant (selenomethionine-labeled)
Classification: VIRAL PROTEIN
Source organism: Eastern chimpanzee simian foamy virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2020-11-21
Authors: Harrison, J.J.E.K., Das, K., Ruiz, F.X., Arnold, E.
PDB entry 7ksf: Crystal structure of Prototype Foamy Virus Protease-Reverse Transcriptase (native)
Classification: VIRAL PROTEIN
Source organism: Eastern chimpanzee simian foamy virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-11-21
Authors: Harrison, J.J.E.K., Das, K., Ruiz, F.X., Arnold, E.
PDB entry 7ksg: SARS-CoV-2 spike in complex with nanobodies E
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2020-11-22
Authors: Hallberg, B.M., Das, H.
PDB entry 7ksi: Thiophenyl-Pyrazolourea Derivatives as Potent, Brian Penetrant, Orally Bioavailable, and Isoform-Selective JNK3 Inhibitors
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.726 Å
Deposited: 2020-11-23
Authors: Park, H.
PDB entry 7ksj: Thiophenyl-Pyrazolourea Derivatives as Potent, Brian Penetrant, Orally Bioavailable, and Isoform-Selective JNK3 Inhibitors
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2020-11-23
Authors: Park, H.
PDB entry 7ksk: Thiophenyl-Pyrazolourea Derivatives as Potent, Brian Penetrant, Orally Bioavailable, and Isoform-Selective JNK3 Inhibitors
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2020-11-23
Authors: Park, H.
PDB entry 7ksl: Substrate-free human mitochondrial LONP1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-11-23
Authors: Shin, M., Watson, E.R., Song, A.S., Mindrebo, J.T., Novick, S.R., Griffin, P., Wiseman, R.L., Lander, G.C.
PDB entry 7ksm: Human mitochondrial LONP1 with endogenous substrate
Classification: HYDROLASE
Source organism: Escherichia coli BL21(DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-11-23
Authors: Shin, M., Watson, E.R., Song, A.S., Mindrebo, J.T., Novick, S.R., Griffin, P., Wiseman, R.L., Lander, G.C.
PDB entry 7ksn: Crystal Structure of Sugarwin
Classification: ANTIFUNGAL PROTEIN
Source organism: Saccharum hybrid cultivar SP80-3280
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2020-11-23
Authors: Maia, L.B.L., Pereira, H.M., Henrique-Silva, F., Garratt, R.C., Silva Filho, M.C.
PDB entry 7kso: Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2
Classification: GENE REGULATION/Transferase
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-11-23
Authors: Grau, D.J., Armache, K.J.
PDB entry 7ksp: Crystal structure of hSAMD9_DBD with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-11-23
Authors: Peng, S., Pathak, P., Xiang, Y., Deng, J.
PDB entry 7ksq: The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Classification: PHOTOSYNTHESIS
Source organism: Physcomitrium patens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-11-23
Authors: Riddle, R., Gorski, C., Toporik, H., Dobson, Z., Da, Z., Williams, D., Mazor, Y.
PDB entry 7ksr: PRC2:EZH1_A from a dimeric PRC2 bound to a nucleosome
Classification: GENE REGULATION/Transferase
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2020-11-24
Authors: Grau, D.J., Armache, K.J.
PDB entry 7kss: DNA Polymerase Mu, dGTP:Ct Pre-Catalytic Ground State Ternary Complex, 10 mM Ca2+ (20min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.503 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kst: DNA Polymerase Mu, dGTP:Ct Reaction State Ternary Complex, 10 mM Mn2+ (2min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.599 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ksu: DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (4min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ksv: DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (960min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ksw: DNA Polymerase Mu, dGTP:Ct Reaction State Ternary Complex, 10 mM Mg2+ (10min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ksx: DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (30min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ksy: DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (960min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.577 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ksz: DNA Polymerase Mu, dGTP:At Pre-Catalytic Ground State Ternary Complex, 10 mM Ca2+ (960min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.417 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt0: DNA Polymerase Mu, dGTP:At Ground State Ternary Complex, 50 mM Mg2+ (60min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt1: DNA Polymerase Mu, dGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (180min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.665 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt2: DNA Polymerase Mu, dGTP:At Product State Ternary Complex, 50 mM Mn2+ (225min)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt3: DNA Polymerase Mu, 8-oxodGTP:At Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.879 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt4: DNA Polymerase Mu, 8-oxodGTP:At Reaction State Ternary Complex, 10 mM Mn2+ (30min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.922 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt5: DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mn2+ (120min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt6: DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mn2+ (960min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt7: DNA Polymerase Mu, 8-oxodGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (60min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt8: DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 50 mM Mg2+ (180min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.701 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kt9: DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 50 mM Mg2+ (960min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.482 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kta: DNA Polymerase Mu, 8-oxodGTP:Ct Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.844 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktb: DNA Polymerase Mu, 8-oxodGTP:Ct Reaction State Ternary Complex, 10 mM Mn2+ (40min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.576 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktc: DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (120min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.653 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktd: DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (960min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.551 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kte: DNA Polymerase Mu, 8-oxodGTP:Ct Reaction State Ternary Complex, 50 mM Mg2+ (90min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.479 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktf: DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mg2+ (180min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.489 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktg: DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mg2+ (960min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.445 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kth: DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (2160min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.476 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kti: DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 20 uM Mn2+ (120min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktj: DNA Polymerase Mu (K438D), 8-oxodGTP:Ct Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.452 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktk: DNA Polymerase Mu (K438D), 8-oxodGTP:Ct Ground State Ternary Complex, 50 mM Mg2+ (90min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.419 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktl: DNA Polymerase Mu (K438D), 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mn2+ (90min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.421 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktm: DNA Polymerase Mu (K438D), 8-oxodGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (30min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.528 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7ktn: DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mg2+ (2160min)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2020-11-24
Authors: Jamsen, J.A., Wilson, S.H.
PDB entry 7kto: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56A mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2020-11-24
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7ktp: PRC2:EZH1_B from a dimeric PRC2 bound to a nucleosome
Classification: GENE REGULATION/Transferase
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2020-11-24
Authors: Grau, D.J., Armache, K.J.
PDB entry 7ktq: Nucleosome from a dimeric PRC2 bound to a nucleosome
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-11-24
Authors: Grau, D.J., Armache, K.J.
PDB entry 7ktr: Cryo-EM structure of the human SAGA coactivator complex (TRRAP, core)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; unclassified Rhodococcus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2020-11-24
Authors: Herbst, D.A., Esbin, M.N., Nogales, E.
PDB entry 7kts: Negative stain EM structure of the human SAGA coactivator complex (TRRAP, core, splicing module)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; unclassified Rhodococcus
Experimental method: ELECTRON MICROSCOPY
Resolution: 19.09 Å
Deposited: 2020-11-24
Authors: Herbst, D.A., Esbin, M.N., Nogales, E.
PDB entry 7ktt: Cryogenic electron microscopy model of full-length human metavinculin
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.17 Å
Deposited: 2020-11-24
Authors: Izard, T., Rangarajan, E.S.
PDB entry 7ktu: Cryogenic electron microscopy model of full-length human metavinculin H1'-parallel conformation 1
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.15 Å
Deposited: 2020-11-24
Authors: Izard, T., Rangarajan, E.S.
PDB entry 7ktv: Cryogenic electron microscopy model of full-length human metavinculin H1' kinked conformation
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2020-11-24
Authors: Izard, T., Rangarajan, E.S.
PDB entry 7ktw: Cryogenic electron microscopy model of full-length human metavinculin H1'-parallel conformation 2
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.27 Å
Deposited: 2020-11-24
Authors: Izard, T., Rangarajan, E.S.
PDB entry 7ktx: Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to a Fab in DDM detergent
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Saccharomyces cerevisiae BY4743
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-11-24
Authors: Miller-Vedam, L.E., Schirle Oakdale, N.S., Braeuning, B., Boydston, E.A., Sevillano, N., Popova, K.D., Bonnar, J.L., Shurtleff, M.J., Prabu, J.R., Stroud, R.M., Craik, C.S., Schulman, B.A., Weissman, J.S., Frost, A.
PDB entry 7kty: Data clustering and dynamics of chymotrypsinogen average structure
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-24
Authors: Nguyen, T., Phan, K.L., Kreitler, D.F., Andrews, L.C., Gabelli, S.B., Kozakov, D., Jakoncic, J., Shi, W., Sweet, R.M., Soares, A.S., Bernstein, H.J.
PDB entry 7ktz: Data clustering and dynamics of chymotrypsinogen cluster 131 (purple) structure
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-24
Authors: Nguyen, T., Phan, K.L., Kreitler, D.F., Andrews, L.C., Gabelli, S.B., Kozakov, D., Jakoncic, J., Sweet, R.M., Soares, A.S., Bernstein, H.J.
PDB entry 7ku0: Data clustering and dynamics of chymotrypsinogen cluster 138 (yellow) structure
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2020-11-24
Authors: Nguyen, T., Phan, K.L., Kreitler, D.F., Andrews, L.C., Gabelli, S.B., Kozakov, D., Jakoncic, J., Sweet, R.M., Soares, A.S., Bernstein, H.J.
PDB entry 7ku1: Data clustering and dynamics of chymotrypsinogen cluster 139 (green) structure
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2020-11-24
Authors: Nguyen, T., Phan, K.L., Kreitler, D.F., Andrews, L.C., Gabelli, S.B., Kozakov, D., Jakoncic, J., Sweet, R.M., Soares, A.S., Bernstein, H.J.
PDB entry 7ku2: Data clustering and dynamics of chymotrypsinogen clulster 140 (structure)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.185 Å
Deposited: 2020-11-24
Authors: Nguyen, T., Phan, K.L., Kreitler, D.F., Andrews, L.C., Gabelli, S.B., Kozakov, D., Jakoncic, J., Sweet, R.M., Soares, A.S., Bernstein, H.J.
PDB entry 7ku3: Data clustering and dynamics of chymotrypsinogen cluster 141 (cyan) structure
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-24
Authors: Nguyen, T., Phan, K.L., Kreitler, D.F., Andrews, L.C., Gabelli, S.B., Kozakov, D., Jakoncic, J., Sweet, R.M., Soares, A.S., Bernstein, H.J.
PDB entry 7ku4: DNA-DB818 complex: The DNA sequence 5'-CGCGAATTCGCG-3' presents a binding site for the heterocyclic small molecule (DB818).
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-11-24
Authors: Ogbonna, E., Fang, Z., Wilson, W.D.
PDB entry 7ku5: The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Classification: PHOTOSYNTHESIS
Source organism: Physcomitrium patens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2020-11-24
Authors: Riddle, R., Gorski, C., Toporik, H., Dobson, Z., Da, Z., Williams, D., Mazor, Y.
PDB entry 7ku6: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56N mutant with pyruvate bound in the active site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2020-11-24
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7ku7: Cryo-EM structure of Rous sarcoma virus cleaved synaptic complex (CSC) with HIV-1 integrase strand transfer inhibitor MK-2048. Cluster identified by 3-dimensional variability analysis in cryoSPARC.
Classification: HYDROLASE/DNA/INHIBITOR
Source organism: Rous sarcoma virus (strain Schmidt-Ruppin A); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-11-24
Authors: Pandey, K.K., Bera, S., Shi, K., Aihara, H., Grandgenett, D.P.
PDB entry 7ku9: The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase with sodium ion at the metal coordination site, two molecules of F6F inhibitor at the enzyme alpha-site and another F6F molecule at the enzyme beta-site at 1.40 Angstrom resolution
Classification: LYASE/LYASE INHIBITOR
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-11-24
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7kua: Crystal structure of the MarR family transcriptional regulator from Pseudomonas putida bound to Indole 3 acetic acid
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2020-11-24
Authors: Walton, W.G., Lietzan, A.D., Redinbo, M.R., Dangl, J.L.
PDB entry 7kub: Au1 Domain of VEGF Readthrough Element
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2020-11-24
Authors: D'Souza, V.M., Wagner, N.O., Edwards, J.M.
PDB entry 7kuc: Ax1 Domain of VEGF Readthrough Element
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2020-11-24
Authors: D'Souza, V.M., Wagner, N.O., Edwards, J.M.
PDB entry 7kud: Ax2 Domain of VEGF Readthrough Element
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2020-11-24
Authors: D'Souza, V.M., Wagner, N.O., Edwards, J.M.
PDB entry 7kue: CryoEM structure of Yeast TFIIK (Kin28/Ccl1/Tfb3) Complex
Classification: TRANSCRIPTION/Transferase
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-11-24
Authors: van Eeuwen, T., Murakami, K., Li, T., Tsai, K.L.
PDB entry 7kuf: Transcription activation subcomplex with WhiB7 bound to SigmaAr4-RNAP Beta flap tip chimera and DNA
Classification: TRANSCRIPTION
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-11-24
Authors: Wan, T., Horova, M., Beltran, D.G., Li, S.R., Zhang, L.M.
PDB entry 7kug: Fe-S cluster-bound transcription activator WhiB7 in complex with the SigmaAr4-RNAP Beta flap tip chimera
Classification: TRANSCRIPTION
Source organism: Mycobacterium tuberculosis; Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-11-24
Authors: Wan, T., Horova, M., Beltran, D.G., Li, S.R., Zhang, L.M.
PDB entry 7kuh: MicroED structure of mVDAC
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.12 Å
Deposited: 2020-11-25
Authors: Martynowycz, M.W., Khan, F., Hattne, J., Abramson, J., Gonen, T.
PDB entry 7kui: Cryo-EM structure of Rous sarcoma virus cleaved synaptic complex (CSC) with HIV-1 integrase strand transfer inhibitor MK-2048. CIC region of a cluster identified by 3-dimensional variability analysis in cryoSPARC.
Classification: VIRAL PROTEIN
Source organism: Rous sarcoma virus (strain Schmidt-Ruppin A); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-11-25
Authors: Pandey, K.K., Bera, S., Shi, K., Aihara, H., Grandgenett, D.P.
PDB entry 7kuk: High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2020-11-25
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7kul: DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2020-11-25
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7kum: LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.714 Å
Deposited: 2020-11-25
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7kun: 2'-F modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2020-11-25
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7kuo: FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.281 Å
Deposited: 2020-11-25
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7kup: 2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2020-11-25
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7kuq: Crystal Structure of Danio rerio Histone Deacetylase 10 Y307F Mutant in Complex with N8-Acetylspermidine
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-11-25
Authors: Herbst-Gervasoni, C.J., Christianson, D.W.
PDB entry 7kur: Crystal Structure of Danio rerio Histone Deacetylase 10 Y307F Mutant in Complex with N-Acetylputrescine
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-11-25
Authors: Herbst-Gervasoni, C.J., Christianson, D.W.
PDB entry 7kus: Crystal Structure of Danio rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate)
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-25
Authors: Herbst-Gervasoni, C.J., Christianson, D.W.
PDB entry 7kut: Crystal Structure of Danio rerio Histone Deacetylase 10 H137A Mutant in Complex with N-Acetylputrescine (Tetrahedral Intermediate)
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-11-25
Authors: Herbst-Gervasoni, C.J., Christianson, D.W.
PDB entry 7kuu: LsfA from P. aeruginosa, a 1-Cys Prx in Sulfonic acid form
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-25
Authors: AIeixo-Silva, R.L., Domingos, R.M., Netto, L.E.S.
PDB entry 7kuv: Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with Acetate
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-11-25
Authors: Herbst-Gervasoni, C.J., Christianson, D.W.
PDB entry 7kuw: High-throughput design and refinement of stable proteins using sequence-only models
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2020-11-25
Authors: Bera, A.K., Stewart, L., Kang, A.S., Baker, D.
PDB entry 7kux: The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Classification: PHOTOSYNTHESIS
Source organism: Physcomitrium patens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-11-25
Authors: Riddle, R., Gorski, C., Toporik, H., Dobson, Z., Da, Z., Williams, D., Mazor, Y.
PDB entry 7kuy: Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, strychnine bound state
Classification: MEMBRANE PROTEIN, SIGNALING PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-11-25
Authors: Yu, H., Wang, W.
PDB entry 7kuz: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56N mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-11-25
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7kv0: Crystallographic structure of Paenibacillus xylanivorans GH11
Classification: HYDROLASE
Source organism: Paenibacillus sp. A59
Experimental method: X-RAY DIFFRACTION
Resolution: 2.501 Å
Deposited: 2020-11-26
Authors: Briganti, L., Polikarpov, I.
PDB entry 7kv1: Surface glycan-binding protein A from Bacteroides uniformis
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides uniformis (strain ATCC 8492 / DSM 6597 / CIP 103695 / JCM 5828 / NCTC 13054 / VPI 0061)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2020-11-26
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kv2: Surface glycan-binding protein A from Bacteroides thetaiotaomicron
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-26
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kv3: Surface glycan-binding protein A from Bacteroides thetaiotaomicron in complex with laminarihexaose
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-11-26
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kv4: Surface glycan-binding protein A from Bacteroides fluxus
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides fluxus YIT 12057
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2020-11-26
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kv5: Surface glycan-binding protein B from Bacteroides fluxus
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides fluxus YIT 12057
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2020-11-26
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kv6: Surface glycan-binding protein B from Bacteroides fluxus in complex with mixed-linkage glucotriose
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides fluxus YIT 12057
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-11-26
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kv7: Surface glycan-binding protein B from Bacteroides fluxus in complex with laminaritriose
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides fluxus YIT 12057
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2020-11-26
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kv8: Chimeric flavivirus between Binjari virus and Dengue virus serotype-2
Classification: VIRUS
Source organism: Dengue virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2020-11-27
Authors: Hardy, J.M., Venugopal, H.V., Newton, N.D., Watterson, D., Coulibaly, F.J.
PDB entry 7kv9: Chimeric flavivirus between Binjari virus and West Nile (Kunjin) virus
Classification: VIRUS
Source organism: Kunjin virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-11-27
Authors: Hardy, J.M., Venugopal, H.V., Newton, N.D., Watterson, D., Coulibaly, F.J.
PDB entry 7kva: Structure of West Nile virus (Kunjin)
Classification: VIRUS
Source organism: Kunjin virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-11-27
Authors: Hardy, J.M., Venugopal, H.V., Newton, N.D., Watterson, D., Coulibaly, F.J.
PDB entry 7kvb: Chimeric flavivirus between Binjari virus and Murray Valley encephalitis virus
Classification: VIRUS
Source organism: Murray Valley encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2020-11-27
Authors: Hardy, J.M., Venugopal, H.V., Newton, N.D., Watterson, D., Coulibaly, F.J.
PDB entry 7kvc: Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Classification: VIRAL PROTEIN
Source organism: Mal de Rio Cuarto virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2020-11-27
Authors: Llauger, G., Melero, R., Monti, D., Sycz, G., Huck-Iriart, C., Cerutti, M.L., Klinke, S., Arranz, R., Carazo, J.M., Goldbaum, F.A., del Vas, M., Otero, L.H.
PDB entry 7kvd: Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (dodecamer)
Classification: VIRAL PROTEIN
Source organism: Mal de Rio Cuarto virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2020-11-27
Authors: Llauger, G., Melero, R., Monti, D., Sycz, G., Huck-Iriart, C., Cerutti, M.L., Klinke, S., Arranz, R., Carazo, J.M., Goldbaum, F.A., del Vas, M., Otero, L.H.
PDB entry 7kve: Cryo-EM structure of human Factor V at 3.3 Angstrom resolution
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-11-27
Authors: Ruben, E.A., Di Cera, E.
PDB entry 7kvf: Cryo-EM structure of human Factor V at 3.6 Angstrom resolution
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-11-28
Authors: Ruben, E.A., Di Cera, E.
PDB entry 7kvh: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.791 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvi: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvj: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvk: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvl: SARS-CoV-2 Main protease immature form - FMAX Library E01 fragment
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2020-11-28
Authors: Noske, G.D., Nakamura, A.M., Gawriljuk, V.O., Lima, G.M.A., Zeri, A.C.M., Nascimento, A.F.Z., Fernandes, R.S., Oliva, G., Godoy, A.S.
PDB entry 7kvm: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvn: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvo: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvp: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvq: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvr: SARS-CoV-2 Main protease immature form - FMAX Library E09 fragment
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2020-11-28
Authors: Noske, G.D., Nakamura, A.M., Gawriljuk, V.O., Lima, G.M.A., Zeri, A.C.M., Nascimento, A.F.Z., Fernandes, R.S., Oliva, G., Godoy, A.S.
PDB entry 7kvs: Human CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-11-28
Authors: Sevrioukova, I.
PDB entry 7kvt: Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2020-11-28
Authors: Truong, L., Ferre-D'Amare, A.R.
PDB entry 7kvu: Crystal structure of Squash RNA aptamer in complex with DFHBI-1T
Classification: RNA
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2020-11-28
Authors: Truong, L., Ferre-D'Amare, A.R.
PDB entry 7kvv: Crystal structure of Squash RNA aptamer in complex with DFHBI-1T
Classification: RNA
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2020-11-28
Authors: Truong, L., Ferre-D'Amare, A.R.
PDB entry 7kvw: Non-ribosomal didomain (holo-PCP-C) acceptor bound state
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermobifida fusca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2020-11-29
Authors: Izore, T., Ho, Y.T.C., Kaczmarski, J.A., Gavriilidou, A., Chow, K.H., Steer, D., Goode, R.J.A., Schittenhelm, R.B., Tailhades, J., Tosin, M., Challis, G.L., Krenske, E.H., Ziemert, N., Jackson, C.J., Cryle, M.J.
PDB entry 7kvx: Structure of hSTING in complex with novel carbocyclic pyrimidine CDN 1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2020-11-29
Authors: Skene, R.
PDB entry 7kvy: Crystal Structure of Acetyl-CoA synthetase in complex with adenosine-5'-ethylphosphate and Co-enzyme A from Coccidioides immitis RS
Classification: LIGASE
Source organism: Coccidioides immitis (strain RS)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-11-29
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kvz: Structure of hSTING in complex with novel carbocyclic pyrimidine CDN-2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-11-29
Authors: Skene, R.J.
PDB entry 7kw0: Non-ribosomal didomain (stabilised glycine-PCP-C) acceptor bound state
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermobifida fusca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-11-29
Authors: Izore, T., Ho, Y.T.C., Kaczmarski, J.A., Gavriilidou, A., Chow, K.H., Steer, D., Goode, R.J.A., Schittenhelm, R.B., Tailhades, J., Tosin, M., Challis, G.L., Krenske, E.H., Ziemert, N., Jackson, C.J., Cryle, M.J.
PDB entry 7kw1: Structure of hSTING in complex with novel carbocyclic pyrimidine CDN-3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-29
Authors: Skene, R.
PDB entry 7kw2: Non-ribosomal didomain (holo-PCP-C) acceptor bound state, R2577G
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermobifida fusca
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-29
Authors: Izore, T., Ho, Y.T.C., Kaczmarski, J.A., Gavriilidou, A., Chow, K.H., Steer, D., Goode, R.J.A., Schittenhelm, R.B., Tailhades, J., Tosin, M., Challis, G.L., Krenske, E.H., Ziemert, N., Jackson, C.J., Cryle, M.J.
PDB entry 7kw3: Non Ribosomal PCP domain
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermobifida fusca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-11-29
Authors: Izore, T., Ho, Y.T.C., Kaczmarski, J.A., Gavriilidou, A., Chow, K.H., Steer, D., Goode, R.J.A., Schittenhelm, R.B., Tailhades, J., Tosin, M., Challis, G.L., Krenske, E.H., Ziemert, N., Jackson, C.J., Cryle, M.J.
PDB entry 7kw4: L-DNA containing 2'-fluoro modification
Classification: DNA
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2020-11-29
Authors: Zhang, W., Zhang, Y.
PDB entry 7kw6: Crystal structure of the BlCel48B from Bacillus licheniformis
Classification: HYDROLASE
Source organism: Bacillus licheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2020-11-30
Authors: Araujo, E.A., Polikarpov, I.
PDB entry 7kw7: Atomic cryoEM structure of Hsp90-Hsp70-Hop-GR
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2020-11-30
Authors: Wang, R.Y., Noddings, C.M., Kirschke, E., Myasnikov, A., Johnson, J.L., Agard, D.A.
PDB entry 7kw8: NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis
Classification: TRANSFERASE
Source organism: Runella slithyformis
Experimental method: SOLUTION NMR
Deposited: 2020-11-30
Authors: Alphonse, S., Dantuluri, S., Banerjee, A., Shuman, S., Ghose, R.
PDB entry 7kw9: NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis in complex with NAD+
Classification: TRANSFERASE
Source organism: Runella slithyformis
Experimental method: SOLUTION NMR
Deposited: 2020-11-30
Authors: Alphonse, S., Dantuluri, S., Banerjee, A., Shuman, S., Ghose, R.
PDB entry 7kwa: Structure of DCN1 bound to N-((4S,5S)-3-(aminomethyl)-7-ethyl-4-(4-fluorophenyl)-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl)-3-(trifluoromethyl)benzamide
Classification: LIGASE/Inhibitor
Source organism: Enterobacteria phage RB59; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.572 Å
Deposited: 2020-11-30
Authors: Kim, H.S., Hammill, J.T., Schulman, B.A., Guy, R.K., Scott, D.C.
PDB entry 7kwb: Surface glycan-binding protein B from Bacteroides thetaiotaomicron
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-11-30
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kwc: Surface glycan-binding protein B (truncated) from Bacteroides thetaiotaomicron
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.611 Å
Deposited: 2020-11-30
Authors: Tamura, K., Brumer, H., Van Petegem, F.
PDB entry 7kwd: Crystal structure of Thermus thermophilus alkaline phosphatase
Classification: HYDROLASE
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-11-30
Authors: Gallo, G., Coelho, C., Borges, B., Negri, N., Maiello, F., Hardy, L., Wurtele, M.
PDB entry 7kwe: Crystal structure of the catalytic domain of human PDE3A bound to DNMDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-30
Authors: Horner, S.W., Garvie, C.
PDB entry 7kwf: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56N mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2020-11-30
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7kwg: Staphylococcus aureus 30S ribosomal subunit in presence of spermidine
Classification: RIBOSOME
Source organism: Staphylococcus aureus (strain NCTC 8325 / PS 47); Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2020-11-30
Authors: Belinite, M., Khusainov, I., Marzi, S., Romby, P., Yusupov, M., Hashem, Y.
PDB entry 7kwh: Spermidine N-acetyltransferase SpeG K23-Y30 chimera from Vibrio cholerae and hSSAT
Classification: TRANSFERASE
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-12-01
Authors: Le, V.T.B., Tsimbalyuk, S., Lim, E.Q., Solis, A., Gawat, D., Boeck, P., Renolo, R., Forwood, J.K.
PDB entry 7kwi: Solution Structure of the R2ab Repeat Domain from Staph. epidermidis Autolysin (AtlE)
Classification: HYDROLASE
Source organism: Staphylococcus epidermidis
Experimental method: SOLUTION NMR
Deposited: 2020-12-01
Authors: Yadav, R., Perera, Y.R., Fitzkee, N.C.
PDB entry 7kwj: Spermidine N-acetyltransferase SpeG K23-Q34 chimera from Vibrio cholerae and hSSAT
Classification: TRANSFERASE
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2020-12-01
Authors: Le, V.T.B., Tsimbalyuk, S., Lim, E.Q., Solis, A., Gawat, D., Boeck, P., Renolo, R., Forwood, J.K., Kuhn, M.L.
PDB entry 7kwk: DNA-DB1879 complex: The DNA sequence 5'-CGCGAATTCGCG-3' presents a binding site for the heterocyclic small molecule (DB1879).
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2020-12-01
Authors: Ogbonna, E., Fang, Z., Wilson, D.W.
PDB entry 7kwl: Deoxyuridine in DNA Structure: Solution Structure of [d(CGUGAATTCGCG)]2
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2020-12-01
Authors: Meints, G.A., Ljunggren, K.D.
PDB entry 7kwm: CtBP1 (28-375) L182F/V185T - AMP
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-12-01
Authors: Royer, W.E., Del Campo, M.
PDB entry 7kwn: Dihydrodipicolinate synthase from C. jejuni with pyruvate bound to the active site in C2221 space group
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2020-12-01
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7kwo: rFVIIIFc-VWF-XTEN (BIVV001)
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-12-01
Authors: Fuller, J.R., Batchelor, J.D.
PDB entry 7kwp: Dihydrodipicolinate synthase (DHDPS) from C.jejuni with pyruvate bound in the active site and L-lysine bound at the allosteric site in C2221 space group
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2020-12-01
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7kwq: Spermidine N-acetyltransferase SpeG R149-K152 chimera from Vibrio cholerae and hSSAT
Classification: TRANSFERASE
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-12-01
Authors: Le, V.T.B., Tsimbalyuk, S., Lim, E.Q., Solis, A., Gawat, D., Boeck, P., Renolo, R., Forwood, J.K., Kuhn, M.L.
PDB entry 7kwr: 1,N6-ethenoadnine (E) in dsDNA sequence (5'-CGCGEATTCGCG-3')
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2020-12-01
Authors: Meints, G.A., Ljunggren, K.D.
PDB entry 7kws: Cj1441 with NAD+ and UDP-glucose
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2020-12-02
Authors: Riegert, A.S., Raushel, F.M.
PDB entry 7kwt: X-ray Crystal Structure of PlyCB Mutant Y28H
Classification: ANTIMICROBIAL PROTEIN
Source organism: Streptococcus virus C1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2020-12-02
Authors: Williams, D.E., Broendum, S.S., Hayes, B.K., Drinkwater, N., McGowan, S.
PDB entry 7kwu: Crystal Structure of HIV-1 RT in Complex with 16c (K07-15)
Classification: TRANSFERASE/INHIBITOR
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2020-12-02
Authors: Ruiz, F.X., Arnold, E.
PDB entry 7kwv: The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site at 1.30 Angstrom resolution
Classification: LYASE/LYASE INHIBITOR
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-12-02
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.