LiteFold/PDB huggingface dataset:
PDB entry 9rvi: 10 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-07-08
Authors: Mason, T.J., Carrillo, M., Beale, J.H., Padeste, C.
PDB entry 9rvo: 25 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2025-07-08
Authors: Mason, T.J., Carrillo, M., Beale, J.H., Padeste, C.
PDB entry 9rvp: Protein 2A from Theiler's murine encephalomyelitis virus (TMEV) bound to RNA pseudoknot
Classification: RNA
Source organism: Theiler's encephalomyelitis virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-07-08
Authors: Betts, J.K., Jeffries, C.M., Passchier, T.C., Kung, H.C.Y., Graham, S.P., Abdelhamid, M.A.S., Howard, J.A.L., Craggs, T.D., Graham, S.C., Brierley, I., Leake, M.C., Quinn, S.D., Hill, C.H.
PDB entry 9rvt: ACE2 extracellular domain in complex with the macrocyclic peptide GR1.4
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-07-08
Authors: Brear, P., Hyvonen, M.
PDB entry 9rvu: in situ S. pombe hibernating ribosome after 7 days of glucose depletion
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-07-09
Authors: Rosa, H., Gluc, M., Jomaa, A., Mattei, S.
PDB entry 9rvy: Egalitarian-BicD in complex with K10 TLS RNA (Structure A)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rvz: Egalitarian-BicD in complex with K10 TLS RNA (Structure B)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw0: Egalitarian-BicD in complex with K10 TLS RNA (Structure C)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw1: Egalitarian-BicD in complex with K10 TLS RNA (Structure D)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw2: Egalitarian-BicD in complex with K10 TLS RNA (Structure E)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw3: Egalitarian-BicD in complex with hSL1 of the hairy localization element (Structure A)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw4: Egalitarian-BicD in complex with hSL1 of the hairy localization element (Structure B)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw5: Egalitarian-BicD in complex with hSL1 of the hairy localization element (Structure C)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw6: Egalitarian-BicD in complex with ILS of I-factor mRNA (Structure A)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw7: Egalitarian-BicD in complex with bcdSLV of bicoid mRNA (Structure A)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw8: Egalitarian-BicD in complex with bcdSLV of bicoid mRNA (Structure B)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rw9: Egalitarian-BicD in complex with bcdSLV of bicoid mRNA (Structure C)
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rwa: Egalitarian-BicD in complex with GLS of gurken mRNA
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rwb: Egalitarian-BicD in complex with hSL1 and hSL2 of the hairy localization element
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-09
Authors: Singh, K., Chilaeva, S., McClintock, M.A., Bullock, S.L., Carter, A.P.
PDB entry 9rwd: High-resolution structure of human SHMT2 with covalently bound PLP (internal aldimine)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-07-09
Authors: Warlich, A., Ruszkowski, M., Nawrot, D.
PDB entry 9rwf: Solution NMR structure of a peptide encompassing residues 967-991 of the human formin INF2
Classification: CELL ADHESION
Experimental method: SOLUTION NMR
Deposited: 2025-07-09
Authors: Jimenez, M.A., Morales, P., Correas, I., Alonso, M.A.
PDB entry 9rwg: Pentameric AAV2 Rep40 in complex with AAV8
Classification: VIRUS
Source organism: adeno-associated virus 8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2025-07-09
Authors: Rouse, S.L., Bubeck, D., Barritt, J.D., Xu, V., Wake, M.
PDB entry 9rwp: Ancestral Group II Chaperonin (ACII) Double-Ring in Closed Conformation
Classification: CHAPERONE
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2025-07-09
Authors: Cuellar, J., Gutierrez-Seijo, J., Severino, R.
PDB entry 9rwq: Ancestral Group III Chaperonin (ACIII) Double-Ring in Open Conformation including the Equatorial and Intermediate Domains (residues 12-200 and 356-507)
Classification: CHAPERONE
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-07-09
Authors: Cuellar, J., Gutierrez-Seijo, J., Severino, R.
PDB entry 9rwr: Ancestral Fibrobacteres-Chlorobi-Bacteroidetes Group Chaperonin (AFCB) Double-Ring in Open Conformation
Classification: CHAPERONE
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-07-09
Authors: Cuellar, J., Gutierrez-Seijo, J., Severino, R.
PDB entry 9rws: high-affinity choline transporter in DDM with Na+ and choline
Classification: MEMBRANE PROTEIN
Source organism: Salimicrobium flavidum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-07-10
Authors: Vilchez-Garcia, J., Lopez-Alonso, J.P., Jiang, H., Ubarretxena-Belandia, I., Tascon, I.
PDB entry 9rwt: high-affinity choline transporter in DDM with Na+
Classification: MEMBRANE PROTEIN
Source organism: Salimicrobium flavidum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-07-10
Authors: Vilchez-Garcia, J., Lopez-Alonso, J.P., Jiang, H., Ubarretxena-Belandia, I., Tascon, I.
PDB entry 9rwz: ZSWIM8-CUL3 complex bound to AGO2-miR-7-CYRANO
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-07-10
Authors: Farnung, J., Slobodyanyuk, E., Bartel, D.P., Schulman, B.A.
PDB entry 9rxe: Solution structure of the HR1c domain of human PKN1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-07-11
Authors: Sophocleous, G., Mott, H.R.
PDB entry 9rxf: E20K/N28G/V36L/D43K/Q48E/I59A/E61K/E72K/V76L/N79S/I92A/D126K/A142V/D153K/D154E/S158T FLAVODOXIN FROM ANABAENA
Classification: ELECTRON TRANSPORT
Source organism: Nostoc sp. PCC 7119
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-07-11
Authors: Martinez-Julvez, M., Perez-Correa, V., Sancho, J., Hidalgo-Toledo, A.
PDB entry 9rxg: Work experience structure of Bovine Hemoglobin, collected at room temperature.
Classification: OXYGEN TRANSPORT
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2025-07-11
Authors: Sandy, J., Balagan, P., Inyang, M., Kibelkyte, I.
PDB entry 9rxh: Cytochrome P450 decarboxylase from Staphylococcus aureus (OleT_Sa) with elaidic acid and acetate bound
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-07-11
Authors: Williams, L.J., Worrall, J.A.R.
PDB entry 9rxi: Schistosoma mansoni Cathepsin D1 bound to Nb10C9
Classification: HYDROLASE
Source organism: Lama glama; Schistosoma mansoni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-07-11
Authors: Parker, K., Clarke, J.D., Owens, R.J.
PDB entry 9rxl: SARS-CoV-2 nucleocapsid C-terminal domain in complex with BCY00018176
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2025-07-11
Authors: Brear, P., Lulla, A., Dods, R., Bezerra, G.A., Hyvonen, M.
PDB entry 9rxm: Cryo-EM structure of TCRpriv/pMHC
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-07-11
Authors: Akil, C., Zhu, Y., Hardenbrook, N., Zhang, P.
PDB entry 9rxn: Structure of the PDZ1 domain from human PDZK1 (NHERF3) with the C-terminal residues (KSTQF) of human URAT1 transporter (SLC22A12)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2025-07-11
Authors: Wirth, C., Mymrikov, E.V., Hunte, C.
PDB entry 9rxo: Structure of the PDZ2 domain from human PDZK1 (NHERF3) with the C-terminal residues (KSTQF) of human URAT1 transporter (SLC22A12)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-07-11
Authors: Wirth, C., Mymrikov, E.V., Hunte, C.
PDB entry 9rxp: Structure of the PDZ4 domain from human PDZK1 (NHERF3) with the C-terminal residues (KSTQF) of human URAT1 transporter (SLC22A12)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-07-11
Authors: Wirth, C., Mymrikov, E.V., Hunte, C.
PDB entry 9rxq: Structure of the PDZ1 domain from human NHERF1 with the C-terminal residues (KSTQF) of human URAT1 transporter (SLC22A12)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2025-07-11
Authors: Wirth, C., Mymrikov, E.V., Hunte, C., Heinicke, J.I.
PDB entry 9rxr: Structure of the PDZ1 domain from human PDZK1 (NHERF3) with the C-terminal residues (VLKSTQF) of human URAT1 transporter (SLC22A12)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2025-07-11
Authors: Wirth, C., Mymrikov, E.V., Hunte, C.
PDB entry 9rxs: Structure of the PDZ4 domain from human PDZK1 (NHERF3) with the C-terminal residues (VLKSTQF) of human URAT1 transporter (SLC22A12)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-11
Authors: Wirth, C., Mymrikov, E.V., Hunte, C.
PDB entry 9rxt: Structure of the PDZ1 domain from human NHERF1 with the C-terminal residues (NATRL) of the human sodium-dependent phosphate transporter 2A (NaPi-IIa, SLC34A1)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2025-07-11
Authors: Wirth, C., Kern, B.A., Mymrikov, E.V., Hunte, C.
PDB entry 9rxw: Ty1 Prime Retrotransposon Capsid C-Terminal Domain, wt
Classification: VIRUS LIKE PARTICLE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-07-13
Authors: Cottee, M.A., Taylor, I.A.
PDB entry 9rxx: Ty1 Prime Retrotransposon Capsid C-Terminal Domain, F323S
Classification: VIRUS LIKE PARTICLE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.616 Å
Deposited: 2025-07-13
Authors: Cottee, M.A., Taylor, I.A.
PDB entry 9rxy: Drt2, an Endogenised Ty1 Gag CA-CTD Restriction Factor, F323S Y329S
Classification: VIRUS LIKE PARTICLE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.184 Å
Deposited: 2025-07-13
Authors: Cottee, M.A., Taylor, I.A.
PDB entry 9ry8: Crystal structure of PfaB from Shewanella baltica strain 6-42
Classification: LIPID BINDING PROTEIN
Source organism: Shewanella baltica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-07-14
Authors: Lofeudo, N., Martin, A., Jacome, M., Wan, X., Lucas, M., Moncalian, G.
PDB entry 9ryc: Structure of human 1918 influenza A polymerase heterotrimer in complex with WSN NEP.
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Brevig Mission/1/1918(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-07-15
Authors: Rep, A., Wang, F., Chen, K., Carrique, L., Grimes, J.M., Fodor, E.
PDB entry 9rye: Heterodimeric ABC exporter TmrAB (EQ mutant) in ATP-bound outward-facing occluded conformation in the absence of Mg2+
Classification: MEMBRANE PROTEIN
Source organism: Thermus thermophilus; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-07-15
Authors: Susac, L., Nocker, C., Tampe, R.
PDB entry 9ryf: Heterodimeric ABC exporter TmrAB (wild type) in ATP-bound outward-facing occluded conformation in the absence of Mg2+
Classification: MEMBRANE PROTEIN
Source organism: Thermus thermophilus; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-07-15
Authors: Susac, L., Nocker, C., Tampe, R.
PDB entry 9ryg: Bifunctional Non-haem Iron Oxygenase NovR Involved in Novobiocin Biosynthesis with product bound
Classification: LYASE
Source organism: Streptomyces niveus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.791 Å
Deposited: 2025-07-15
Authors: Keller, S., Lawson, D.M.
PDB entry 9rzc: State 3 MAP 1 SETD2 bound to distal H3 of upstream nucleosome
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2025-07-15
Authors: Walshe, J.L., Ochmann, M., Dienemann, C., Cramer, P.
PDB entry 9rzd: State 3 MAP 2 SPT6 with SETD2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2025-07-15
Authors: Walshe, J.L., Ochmann, M., Dienemann, C., Cramer, P.
PDB entry 9rze: State 2 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to proximal upstream H3
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.53 Å
Deposited: 2025-07-15
Authors: Walshe, J.L., Ochmann, M., Dienemann, C., Cramer, P.
PDB entry 9rzf: Structure of in-vivo formed alpha-synuclein fibrils purified from a M83+/- mouse brain injected with recombinant 1B fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-07-15
Authors: van den Heuvel, L., Burger, D., Kashyrina, M., de La Seigliere, H., Lewis, A.J., De Nuccio, F., Mohammed, I., Verchere, J., Feuillie, C., Berbon, M., Arotcarena, M., Retailleau, A., Bezard, E., Canron, M., Meissner, W.G., Loquet, A., Bousset, L., Poujol, C., Nilsson, K.P.R., Laferriere, F., Baron, T., Lofrumento, D.D., De Giorgi, F., Stahlberg, H., Ichas, F.
PDB entry 9rzr: Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-Hex) polyoxometalate
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2025-07-16
Authors: Moussawi, M.A., Parac-Vogt, T.N.
PDB entry 9rzs: Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-N3) polyoxometalate
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-07-16
Authors: Moussawi, M.A., Parac-Vogt, T.N.
PDB entry 9rzt: Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-Man) polyoxometalate
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-07-16
Authors: Moussawi, M.A., Parac-Vogt, T.N.
PDB entry 9rzv: E. coli cytochrome bd-I dimer bound to menaquinone
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.23 Å
Deposited: 2025-07-16
Authors: van der Velden, T.T., Kayastha, K., Bruenle, S., Jeuken, L.J.C.
PDB entry 9rzz: PYCR1 in complex with pyrrolidine-1-sulfonic acid.
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-07-16
Authors: Ragin-Oh, W., Ruszkowski, M., Czerwonka, D.
PDB entry 9s01: PYCR1 in complex with L-tartrate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-07-16
Authors: Ragin-Oh, W., Czerwonka, D., Ruszkowski, M.
PDB entry 9s02: PYCR1 in complex with 3-(2-thiazolyl)propionic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-07-16
Authors: Ragin-Oh, W., Czerwonka, D., Ruszkowski, M.
PDB entry 9s04: PYCR1 in complex with 1-(2,4-Difluorophenyl)-2-(1H-1,2,4-triazol-1- yl)ethanone
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-07-16
Authors: Ragin-Oh, W., Czerwonka, D., Ruszkowski, M.
PDB entry 9s06: Dark-state of CBD of TtCarH (TR-SFX, SACLA)
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s07: 3 us Intermediate-state of CBD of TtCarH at 30 mJ/cm2 laser fluence (TR-SFX, SwissFEL), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s08: 10 ns Intermediate-state of CBD of TtCarH at 30 mJ/cm2 laser fluence (TR-SFX, SACLA), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s09: 300 ns Intermediate-state of CBD of TtCarH at 30 mJ/cm2 laser fluence (TR-SFX, SACLA), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s0a: 100 us Intermediate-state of CBD of TtCarH at 30 mJ/cm2 laser fluence (TR-SFX, SACLA), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s0b: 3 ms Intermediate-state of CBD of TtCarH at 30 mJ/cm2 laser fluence (TR-SFX, SACLA), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s0c: 10 ns Intermediate-state of CBD of TtCarH at 12 mJ/cm2 laser fluence (TR-SFX, SACLA), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s0d: 3 us Intermediate-state of CBD of TtCarH at 12 mJ/cm2 laser fluence (TR-SFX, SACLA), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s0e: 3 us Intermediate-state of CBD of TtCarH at 30 mJ/cm2 laser fluence (TR-SFX, SACLA), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s0f: Dark-state of CBD of TtCarH (TR-SFX, SwissFEL)
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s0g: Intermediate-state of CBD of TtCarH after illumination at 180 K (MX, ESRF)
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-07-16
Authors: Schianchi, S., Coquelle, N., Poddar, H., Rios-Santacruz, R., Schiro, G., Weik, M.
PDB entry 9s0h: Dark-state of CBD of TtCarH mutant - H132A (SSX, DLS)
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-16
Authors: Poddar, H., Coquelle, N., Axford, D., Rios-Santacruz, R., Leys, D., Owen, R.L.
PDB entry 9s0i: Intermediate-state of CBD of TtCarH mutant - H132A after 10 ms illumination (SSX, DLS)
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-07-16
Authors: Poddar, H., Coquelle, N., Axford, D., Rios-Santacruz, R., Leys, D., Owen, R.L.
PDB entry 9s0j: 10 ms Intermediate-state of CBD of TtCarH at 30 mJ/cm2 laser fluence (TR-SFX, SwissFEL), refined against extrapolated structure factors
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-07-16
Authors: Rios-Santacruz, R., Coquelle, N., Colletier, J.P., De Zitter, E., Schiro, G., Weik, M.
PDB entry 9s0m: Crystal structure of SARS-CoV-2 NSP14 in complex with compound 1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-07-16
Authors: Georgiou, I., Robinson, C., OByrne, S., Matsuda, A., Grygier, P., Smith, C., ONeill, S., Ahmad, S., Post, J., Groenewold, G.J.M., Urakova, N., Wanningen, P., Kresik, L., Plewka, J., Delpal, A., See, K., Eadsforth, T., Paul, M., Lis, K., Decroly, E., Singh Saikatendu, K., Chang, E., Snijder, E.J., Czarna, A., Pyrc, K., Scott, D., Gilbert, I.
PDB entry 9s0n: Hexameric AAV2 Rep40-dsDNA (ITR) melting complex in presence of ATPyS
Classification: DNA BINDING PROTEIN
Source organism: adeno-associated virus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-07-16
Authors: Rouse, S.L., Bubeck, D., Barritt, J.D., Xu, V., Wake, M.
PDB entry 9s0o: Crystal structure of DNPH1 bound by compound 6
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.514 Å
Deposited: 2025-07-16
Authors: Collie, G.W.
PDB entry 9s0t: Superfolder green fluorescent protein (sfGFP) exhibiting p-(phenylazo)-L-phenylalanine (Pap) at position 39 in complex with alpha-cyclodextrin
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-07-17
Authors: Eichinger, A., Skerra, A.
PDB entry 9s0u: State 3 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to distal upstream H3
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.72 Å
Deposited: 2025-07-17
Authors: Walshe, J.L., Ochmann, M., Dienemann, C., Cramer, P.
PDB entry 9s0v: The Crystal Structure of Human Tissue Nonspecific Alkaline Phosphatase (hTNAP) in complex with phosphate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2025-07-17
Authors: Ballut, L., Violot, S., Imam, I.
PDB entry 9s0z: Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3A
Classification: RNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-07-17
Authors: Raad, N.G., Fernandez-Rodriguez, C., Pandey, R.R., Mohammed, I., Uchikawa, E., Burger, F., Homolka, D., Pillai, R.S.
PDB entry 9s10: Hexameric AAV2 Rep40-dsDNA (ITR) duplex complex in presence of ATPyS
Classification: DNA BINDING PROTEIN
Source organism: adeno-associated virus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-07-17
Authors: Rouse, S.L., Bubeck, D., Barritt, J.D., Xu, V., Wake, M.
PDB entry 9s11: Lectin/toxin 2 from Coprinopsis cinerea
Classification: TOXIN
Source organism: Coprinopsis cinerea okayama7#130
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-07-17
Authors: Cordara, G., Krengel, U.
PDB entry 9s1e: Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 2.8A
Classification: RNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-07-18
Authors: Raad, N.G., Fernandez-Rodriguez, C., Pandey, R.R., Mohammed, I., Uchikawa, E., Burger, F., Homolka, D., Pillai, R.S.
PDB entry 9s1f: Cryo-EM structure of activated retron Eco2 (Ec67)
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli NCTC 86
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-07-18
Authors: Skorupskaite, A., Jasnauskaite, M., Grigaitis, R., Malinauskaite, L., Pausch, P.
PDB entry 9s1i: Crystal structure of human Dihydroorotate Dehydrogenase in complex with arzanol
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-07-18
Authors: Alberti, M., Miggiano, R.
PDB entry 9s1n: Crystal structure of DNPH1 bound by compound 19
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.503 Å
Deposited: 2025-07-18
Authors: Collie, G.W.
PDB entry 9s1o: Crystal structure of DNPH1 bound by compound 18
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.768 Å
Deposited: 2025-07-18
Authors: Collie, G.W.
PDB entry 9s1p: Crystal structure of the DABA transaminase EctB from the halophilic and cold-adapted Marinobacter sp. CK1 -Mutant K264A
Classification: TRANSFERASE
Source organism: Marinobacter sp. CK-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-07-18
Authors: Erlandsen, H., Leiros, I., Skogvold, A.
PDB entry 9s1q: Crystal structure of the DABA transaminase EctB from the halophilic and cold-adapted Marinobacter sp. CK1
Classification: TRANSFERASE
Source organism: Marinobacter sp. CK-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-18
Authors: Erlandsen, H., Skogvold, A., Leiros, I.
PDB entry 9s1s: Crystal structure of C278S mutant of mouse CDC14A in complex with a model phosphopeptide
Classification: CELL CYCLE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-07-21
Authors: Shabbir, K., Jackisch, G., Sele, C., Murina, V., Knecht, W., Wilson, E., Dong, L., Friedman, T.B., Imtiaz, A., Logan, D.T.
PDB entry 9s1u: Crystal structure of human IDO1 in complex with iDeg-3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-21
Authors: Lucas, B., Lucas, M., Ziegler, S., Waldmann, H., Gasper, R.
PDB entry 9s1v: Crystal structure of human IDO1 in complex with iDeg-6
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-07-21
Authors: Lucas, B., Cheng, X., Lucas, M., Ziegler, S., Waldmann, H., Gasper, R.
PDB entry 9s1w: Crystal structure of human IDO1 in complex with iDeg-7
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-21
Authors: Lucas, B., Cheng, X., Lucas, M., Ziegler, S., Waldmann, H., Gasper, R.
PDB entry 9s1x: Crystal structure of human IDO1 in complex with iDeg-9
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-21
Authors: Lucas, B., Cheng, X., Lucas, M., Ziegler, S., Waldmann, H., Gasper, R.
PDB entry 9s1z: Crystal structure of human SIRT2 in complex with the covalent adduct of SirReal-triazole inhibitor Mz242 and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Schiedel, M., Einsle, O., Jung, M.
PDB entry 9s20: Crystal structure of human SIRT2 in complex with SirReal-triazole inhibitor SH10
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Einsle, O., Jung, M.
PDB entry 9s21: Crystal structure of human SIRT2 in complex with SirReal-triazole inhibitor LG023
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Gaitzsch, L., Einsle, O., Jung, M.
PDB entry 9s22: Crystal structure of human SIRT2 in complex with the covalent adduct of SirReal-triazole inhibitor LG023 and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Gaitzsch, L., Einsle, O., Jung, M.
PDB entry 9s23: Crystal structure of human SIRT2 in complex with peptide triazole inhibitor OTDi1
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Meleshin, M., Einsle, O., Schutkowski, M., Jung, M.
PDB entry 9s24: Crystal structure of human SIRT2 in complex with the covalent adduct of peptide triazole inhibitor OTDi1 and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Meleshin, M., Einsle, O., Schutkowski, M., Jung, M.
PDB entry 9s25: Crystal structure of human SIRT2 in complex with peptide triazole inhibitor LTDi1
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Meleshin, M., Einsle, O., Schutkowski, M., Jung, M.
PDB entry 9s26: Crystal structure of human SIRT2 in complex with the covalent adduct of peptide triazole inhibitor LTDi1 and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Meleshin, M., Einsle, O., Schutkowski, M., Jung, M.
PDB entry 9s27: Crystal structure of human SIRT3 in complex with the covalent adduct of peptide triazole inhibitor LTDi1 and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-07-21
Authors: Friedrich, F., Meleshin, M., Einsle, O., Schutkowski, M., Jung, M.
PDB entry 9s2a: X-ray structure of lysozyme obtained upon reaction with the dioxidovanadium(V) complex with thiophene-2-carboxylic acid (3-ethoxy-2-hydroxybenzylidene)hydrazide
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-07-21
Authors: Paolillo, M., Ferraro, G., Merlino, A.
PDB entry 9s2b: 297-441 delta392-395 tau filaments
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-07-21
Authors: Lovestam, S.L., Scheres, S.H.W.
PDB entry 9s2d: KHNYN exPIN nuclease
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-07-21
Authors: Youle, R.L., Taylor, I.A.
PDB entry 9s2i: Ternary structure of 14-3-3, CRAF R256S NS mutant phosphopeptide (pS259), and compound 78 (1124378)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-07-21
Authors: Virta, J.M., Vickery, H.R., Konstantinidou, M., Crawford, M.C., Pennings, M.A.M., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 9s2j: Ternary structure of 14-3-3s, CRAF S257L NS mutant phosphopeptide (pS259) and compound 78 (1084378)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-07-21
Authors: Virta, J.M., Vickery, H.R., Konstantinidou, M., Crawford, M.C., Pennings, M.A.M., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 9s2k: Ternary structure of 14-3-3s, CRAF V263A NS mutant phosphopeptide (pS259), and compound 78 (1124378)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-07-21
Authors: Virta, J.M., Vickery, H.R., Konstantinidou, M., Crawford, M.C., Pennings, M.A.M., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 9s2l: Ternary structure of 14-3-3s, CRAF R256S NS mutant phosphopeptide (pS259), and compound 23 (1083848)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-07-21
Authors: Virta, J.M., Vickery, H.R., Konstantinidou, M., Crawford, M.C., Pennings, M.A.M., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 9s2m: Ternary structure of 14-3-3s, CRAF S257L NS mutant phosphopeptide (pS259), and compound 23 (1083848)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-21
Authors: Virta, J.M., Vickery, H.R., Konstantinidou, M., Crawford, M.C., Pennings, M.A.M., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 9s2n: Ternary structure of 14-3-3s, CRAF V263A NS mutant phosphopeptide (pS259), and compound 23 (1083848)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-07-21
Authors: Virta, J.M., Vickery, H.R., Konstantinidou, M., Crawford, M.C., Pennings, M.A.M., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 9s2o: Ternary structure of 14-3-3s, CRAF R256S NS mutant phosphopeptide (pS259), and compound 22 (1083853)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-07-21
Authors: Virta, J.M., Vickery, H.R., Konstantinidou, M., Crawford, M.C., Pennings, M.A.M., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 9s2p: Ternary structure of 14-3-3s, CRAF V263A NS mutant phosphopeptide (pS259), and compound 22 (1083853)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-07-21
Authors: Virta, J.M., Vickery, H.R., Konstantinidou, M., Crawford, M.C., Pennings, M.A.M., Ottmann, C., Brunsveld, L., Arkin, M.R.
PDB entry 9s2t: Carbamoyl transferase NovN involved in Novobiocin biosynthesis
Classification: TRANSFERASE
Source organism: Streptomyces niveus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2025-07-22
Authors: Gomez Garcia, I., Lawson, D.M.
PDB entry 9s2u: 1:1 complex of M.tuberculosis MmpL5 and M.smegmatis AcpM
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Mycobacterium tuberculosis; Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-22
Authors: Fountain, A.J., Luisi, B.F., Ramakrishan, L.
PDB entry 9s2v: NSP14 IN COMPLEX WITH LIGAND TDI-014925-CL-2 (compound 58)
Classification: VIRAL PROTEIN
Source organism: SARS-CoV-2 pseudovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-07-22
Authors: Steinbacher, S., Huggins, D.J.
PDB entry 9s35: Cryo-EM structure of Candida albicans Vrg4 bound to an inhibitory nanobody.
Classification: TRANSPORT PROTEIN
Source organism: Candida albicans; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-07-23
Authors: Deme, J.C., Parker, J.L., Lea, S.M., Newstead, S.
PDB entry 9s36: Cryo-EM structure of Candida albicans Vrg4 bound to an inhibitory nanobody and GDP-Mannose.
Classification: TRANSPORT PROTEIN
Source organism: Candida albicans; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-23
Authors: Deme, J.C., Parker, J.L., Lea, S.M., Newstead, S.
PDB entry 9s37: Structure of LGR4 with NB21
Classification: MEMBRANE PROTEIN
Source organism: Camelus bactrianus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2025-07-23
Authors: Wang, L., Geng, Y.
PDB entry 9s38: Structure of LGR4 with NB21
Classification: MEMBRANE PROTEIN
Source organism: Camelus bactrianus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2025-07-23
Authors: Wang, L., Geng, Y.
PDB entry 9s3a: TaGST-10 in complex with deoxynivalenol-13-glutathione
Classification: TRANSFERASE
Source organism: Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-24
Authors: Michlmayr, H., Papageorgiou, A.C.
PDB entry 9s3b: NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1
Classification: RIBOSOME
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2025-07-24
Authors: Denk, T., Berninghausen, O., Beckmann, R.
PDB entry 9s3c: NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2
Classification: RIBOSOME
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2025-07-24
Authors: Denk, T., Berninghausen, O., Beckmann, R.
PDB entry 9s3d: NAC bound human RNC with 58 amino acid ARF1-linker
Classification: RIBOSOME
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.32 Å
Deposited: 2025-07-24
Authors: Denk, T., Berninghausen, O., Beckmann, R.
PDB entry 9s3g: State 1 MAP3 RNA Pol II activated elongation complex with SETD2 and upstream hexasome
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2025-07-24
Authors: Walshe, J.L., Ochmann, M., Dienemann, C., Cramer, P.
PDB entry 9s3k: Crystal structure of ancestral (Methanocaldococcaceae/A34) Malate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Methanocaldococcaceae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-07-24
Authors: Coquille, S., Madern, D.
PDB entry 9s3l: ClxA from Clostridium cavendishii (apo)
Classification: LIGASE
Source organism: Clostridium cavendishii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2025-07-24
Authors: Ascham, A., Grogan, G.
PDB entry 9s3n: SARS-CoV-2 nucleocapsid N/C-terminal domain in complex with BCY17628
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-07-24
Authors: Brear, P., Lulla, A., Dodds, R., Bezerra, G., Hyvonen, M.
PDB entry 9s3o: Cerebellar GluA2/4 NTD heterophilic tetramer interface (focused refinement)
Classification: SIGNALING PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-07-24
Authors: Sengupta, N., Scrutton, A., Greger, I.H., Krieger, J.M.
PDB entry 9s3p: Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 3IsdH(alpha2beta):Hbtet complex
Classification: METAL TRANSPORT
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-07-24
Authors: Buoli Comani, V., De Bei, O., Gragera, M., Luisi, B.F., Bettati, S.
PDB entry 9s3q: Cerebellar GluA1/4 NTD tetramer (focused refinement)
Classification: SIGNALING PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-07-24
Authors: Sengupta, N., Scrutton, A., Greger, I.H., Krieger, J.M.
PDB entry 9s3s: Capsid structure of Chaetoceros lorenzianus DNA virus (ClorDNAV), a CRESS-DNA bacilladnavirus
Classification: VIRUS
Source organism: Chaetoceros lorenzianus DNA virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-07-25
Authors: Munke, A., Gebhard, J.
PDB entry 9s3x: EGFR (T790M,L858R) in complex with NCL-26007
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.423 Å
Deposited: 2025-07-25
Authors: Martin, M.P., Pintar, S., Noble, M.E.M.
PDB entry 9s3y: Crystal structure of ancestral (Methanococcaceae/A19) Malate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Methanococcales
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-07-25
Authors: Coquille, S., Madern, D.
PDB entry 9s3z: Cerebellar GluA1/4 LBD tetramer (focused refinement)
Classification: SIGNALING PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2025-07-25
Authors: Sengupta, N., Scrutton, A., Greger, I.H., Krieger, J.M.
PDB entry 9s41: Cerebellar GluA1/4 TMD with TARP gamma 7 (focused refinement)
Classification: SIGNALING PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2025-07-25
Authors: Sengupta, N., Scrutton, A., Greger, I.H., Krieger, J.M.
PDB entry 9s42: Complex of Equine Serum Albumin with Hydrolyzed Ampicillin
Classification: TRANSPORT PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2025-07-25
Authors: Duszynski, K., Sekula, B., Bujacz, A., Bujacz, G.
PDB entry 9s43: Complex of Equine Serum Albumin with Oxacillin
Classification: TRANSPORT PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-07-25
Authors: Duszynski, K., Sekula, B., Bujacz, A., Bujacz, G.
PDB entry 9s44: Human Histone Deacetylase SIRT2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-07-25
Authors: Wirawan, R., Frei, M., Heider, A., Papenkordt, N., Friedrich, F., Wein, T., Jung, M., Groll, M., Huber, E.M., Bracher, F.
PDB entry 9s45: ClxA from Clostridium cavendishii in complex with 3-amino,4-hydroxybenzoic acid and its adenylate
Classification: LIGASE
Source organism: Clostridium cavendishii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-07-25
Authors: Ascham, A., Grogan, G.
PDB entry 9s46: Human SIRT2 in Complex with RW-78
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-07-25
Authors: Wirawan, R., Frei, M., Heider, A., Papenkordt, N., Friedrich, F., Wein, T., Jung, M., Groll, M., Huber, E.M., Bracher, F.
PDB entry 9s48: Human SIRT2 in Complex with RW-80
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-07-25
Authors: Wirawan, R., Frei, M., Heider, A., Papenkordt, N., Friedrich, F., Wein, T., Jung, M., Groll, M., Huber, E.M., Bracher, F.
PDB entry 9s4f: Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 right tail
Classification: METAL TRANSPORT
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-07-28
Authors: Buoli Comani, V., De Bei, O., Gragera, M., Luisi, B.F., Bettati, S.
PDB entry 9s4g: Carbonic anhydrases from Candida parapsilosis
Classification: LYASE
Source organism: Candida parapsilosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.701 Å
Deposited: 2025-07-28
Authors: Dostal, J.
PDB entry 9s4h: Crystal structure of Arabidopsis thaliana Fatty Acid Thioesterase A with the x1816-FU1 ligand
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2025-07-28
Authors: Kot, E., Ni, X., Mulholland, N.P., Montgomery, M.G., von Delft, F.
PDB entry 9s4i: Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 left tail
Classification: METAL TRANSPORT
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-07-28
Authors: Buoli Comani, V., De Bei, O., Gragera, M., Luisi, B.F., Bettati, S.
PDB entry 9s4j: Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 right tail
Classification: METAL TRANSPORT
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-07-28
Authors: Buoli Comani, V., De Bei, O., Gragera, M., Luisi, B.F., Bettati, S.