LiteFold/PDB huggingface dataset:
PDB entry 8icp: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icq: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) AND MNCL2 (0.5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1996-01-04
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icr: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 1996-01-04
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8ics: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8ict: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icu: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icv: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 1996-01-04
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icw: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icx: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icy: DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icz: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 1996-01-04
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8id0: Crystal structure of PflD bound to 1,5-anhydromannitol-6-phosphate in Streptococcus dysgalactiae subsp. equisimilis
Classification: LYASE
Source organism: Streptococcus dysgalactiae subsp. equisimilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-02-11
Authors: Ma, K.L., Zhang, Y.
PDB entry 8id1: Crystal structure of N-Methyl-cis-4-hydroxy-L-proline dehydratase in Intestinibacter bartlettii
Classification: LYASE
Source organism: Intestinibacter bartlettii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.115 Å
Deposited: 2023-02-11
Authors: Jiang, L., Zhang, Y.
PDB entry 8id2: Crystal structure of the ubiquitin-like domain in the SF3A1 subunit of human U2 snRNP complexed with the stem-loop 4 of U1 snRNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-12
Authors: Terawaki, S., Nameki, N., Kuwasako, K.
PDB entry 8id3: Cryo-EM structure of the 9-hydroxystearic acid bound GPR120-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-12
Authors: Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.
PDB entry 8id4: Cryo-EM structure of the linoleic acid bound GPR120-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-12
Authors: Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.
PDB entry 8id6: Cryo-EM structure of the oleic acid bound GPR120-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-02-12
Authors: Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.
PDB entry 8id7: Crystal structure of YbiW in complex with 1,5-anhydroglucitol-6-phosphate in Escherichia coli
Classification: LYASE
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-02-12
Authors: Ma, K.L., Zhang, Y.
PDB entry 8id8: Cryo-EM structure of the TUG891 bound GPR120-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-12
Authors: Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.
PDB entry 8id9: Cryo-EM structure of the eicosapentaenoic acid bound GPR120-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-12
Authors: Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.
PDB entry 8ida: Overall structure of the LAT1-4F2hc bound with tyrosine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-12
Authors: Yan, R.H., Li, Y.N., Shi, T.H.
PDB entry 8idb: Cryo-EM structure of Mycobacterium tuberculosis FtsEX complex in peptidisc
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-02-12
Authors: Li, J., Xu, X., Luo, M.
PDB entry 8idc: Cryo-EM structure of Mycobacterium tuberculosis FtsEX/RipC complex in peptidisc
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-02-12
Authors: Li, J., Xu, X., Luo, M.
PDB entry 8idd: Cryo-EM structure of Mycobacterium tuberculosis ATP bound FtsEX/RipC complex in peptidisc
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-02-12
Authors: Li, J., Xu, X., Luo, M.
PDB entry 8ide: Structure of an ancient TsaD-TsaC-SUA5-TcdA modular enzyme (TsaN)
Classification: VIRAL PROTEIN
Source organism: Pandoravirus salinus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-02-13
Authors: Zhang, Z.L., Jin, M.Q., Yu, Z.J., Chen, W., Wang, X.L., Lei, D.S., Zhang, W.H.
PDB entry 8idf: Crystal structure of human TUT1 complexed with U6 snRNA
Classification: TRANSFERASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2023-02-13
Authors: Yamashita, S., Tomita, K.
PDB entry 8idh: Bromodomain and Extra-terminal Domain (BET) BRD4
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-02-13
Authors: Cao, D., Zhiyan, D., Xiong, B.
PDB entry 8idi: Crystal structure of nanobody VHH-T71 with MERS-CoV RBD
Classification: VIRAL PROTEIN
Source organism: Camelus dromedarius; Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2023-02-13
Authors: Wang, X., Tian, L.
PDB entry 8idm: Crystal structure of nanobody VHH-227 with nanobody VHH-T71 and MERS-CoV RBD
Classification: VIRAL PROTEIN
Source organism: Camelus dromedarius; Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.59 Å
Deposited: 2023-02-13
Authors: Wang, X., Tian, L.
PDB entry 8idn: Cryo-EM structure of RBD/E77-Fab complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-02-13
Authors: Lu, D.F., Zhang, Z.C.
PDB entry 8ido: Crystal structure of nanobody VHH-T148 with MERS-CoV RBD
Classification: VIRAL PROTEIN
Source organism: Camelus dromedarius; Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-14
Authors: Wang, X., Tian, L.
PDB entry 8idp: Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus
Classification: HYDROLASE
Source organism: Talaromyces pinophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-14
Authors: Nakamichi, Y., Watanabe, M., Fujii, T., Inoue, H., Morita, T.
PDB entry 8idq: Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus with xylose
Classification: HYDROLASE
Source organism: Talaromyces pinophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-02-14
Authors: Nakamichi, Y., Watanabe, M., Fujii, T., Inoue, H., Morita, T.
PDB entry 8idr: Crystal structure of apo-form of dehydroquinate dehydratase from Corynebacterium glutamicum
Classification: LYASE
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-14
Authors: Lee, C.H., Kim, S., Kim, K.-J.
PDB entry 8ids: Crystal structure of Bacillus sp. AHU2216 GH13_31 Alpha-glucosidase E256Q/N258P in complex with maltotriose
Classification: HYDROLASE
Source organism: Bacillus sp. (in: firmicutes)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-02-14
Authors: Auiewiriyanukul, W., Saburi, W., Yu, J., Kato, K., Yao, M., Mori, H.
PDB entry 8idt: human nuclear pre-60S ribosomal particle - State G
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-02-14
Authors: Zhang, Y., Gao, N.
PDB entry 8idu: Crystal structure of substrate bound-form dehydroquinate dehydratase from Corynebacterium glutamicum
Classification: LYASE
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-14
Authors: Lee, C.H., Kim, S., Kim, K.-J.
PDB entry 8idv: Crystal structure of Fic protein from Mycoplasma mycoides
Classification: TRANSFERASE
Source organism: Mycoplasma mycoides subsp. capri
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-02-14
Authors: Zhang, H., Zhao, H.F.
PDB entry 8idw: Crystal structure of Fic protein from Mycoplasma mycoides in complex with AMPPNP
Classification: TRANSFERASE
Source organism: Mycoplasma mycoides subsp. capri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.304 Å
Deposited: 2023-02-14
Authors: Zhang, H., Zhao, H.F.
PDB entry 8idx: Structure of p205 HIN
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-14
Authors: Li, Y.L., Jin, T.C.
PDB entry 8idy: human nuclear pre-60S ribosomal particle - State F
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-14
Authors: Zhang, Y., Gao, N.
PDB entry 8idz: Beta-glucosidase BglPcC1
Classification: HYDROLASE
Source organism: Prevotella copri
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2023-02-14
Authors: Zhou, J.P., Zhu, H.R., Zhang, R., Huang, Z.X.
PDB entry 8ie2: Crystal structure of Lactiplantibacillus plantarum GlyRS
Classification: TRANSFERASE,LIGASE
Source organism: Lactiplantibacillus plantarum WCFS1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2023-02-15
Authors: Yamashita, S., Tomita, K.
PDB entry 8ie3: human nuclear pre-60S ribosomal particle - State E
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-15
Authors: Zhang, Y., Gao, N.
PDB entry 8ie4: Crystal structure of GcCGT
Classification: TRANSFERASE
Source organism: Gentiana crassicaulis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-15
Authors: Zhang, M., Bao, Y., He, C., Ye, M.
PDB entry 8ie5: Crystal structure of DAPK1 in complex with oxyresveratrol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.803 Å
Deposited: 2023-02-15
Authors: Yokoyama, T.
PDB entry 8ie6: Crystal structure of DAPK1 in complex with pinostilbene
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.701 Å
Deposited: 2023-02-15
Authors: Yokoyama, T.
PDB entry 8ie7: Crystal structure of DAPK1 in complex with pterostilbene
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.849 Å
Deposited: 2023-02-15
Authors: Yokoyama, T.
PDB entry 8ie8: Crystal structure of DAPK1 in complex with isorhapontigenin
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-15
Authors: Yokoyama, T.
PDB entry 8ieb: Cryo-EM structure of GPR156 of GPR156-miniGo-scFv16 complex (local refine)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-02-15
Authors: Shin, J., Park, J., Cho, Y.
PDB entry 8iec: Cryo-EM structure of miniGo-scFv16 of GPR156-miniGo-scFv16 complex (local refine)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-02-15
Authors: Shin, J., Park, J., Cho, Y.
PDB entry 8ied: Cryo-EM structure of GPR156-miniGo-scFv16 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-02-15
Authors: Shin, J., Park, J., Cho, Y.
PDB entry 8iee: Crystal structure of nanobody VHH-31 with MERS-CoV RBD
Classification: VIRAL PROTEIN
Source organism: Camelus dromedarius; Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2023-02-15
Authors: Wang, X., Tian, L.
PDB entry 8ieg: Bre1(mRBD-RING)/Rad6-Ub/nucleosome complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-02-15
Authors: Ai, H., Deng, Z., Pan, M., Liu, L.
PDB entry 8iei: Cryo-EM structure of GPR156A/B of G-protein free GPR156 (local refine)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2023-02-15
Authors: Shin, J., Park, J., Cho, Y.
PDB entry 8iej: RNF20-RNF40/hRad6A-Ub/nucleosome complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-02-15
Authors: Ai, H., Deng, Z., Sun, M., Du, Y., Pan, M., Liu, L.
PDB entry 8iek: Cryo-EM structure of ATP13A2 in the E1-ATP state
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-15
Authors: Liu, Z.M., Mu, J.Q., Xue, C.Y.
PDB entry 8iel: Cryo-EM structure of ATP13A2 in the E1-like state
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.65 Å
Deposited: 2023-02-15
Authors: Liu, Z.M., Mu, J.Q., Xue, C.Y.
PDB entry 8iem: Cryo-EM structure of ATP13A2 in the E2P state
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-02-15
Authors: Liu, Z.M., Mu, J.Q., Xue, C.Y.
PDB entry 8ien: Cryo-EM structure of ATP13A2 in the E2-Pi state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-02-15
Authors: Liu, Z.M., Mu, J.Q., Xue, C.Y.
PDB entry 8ieo: Cryo-EM structure of ATP13A2 in the nominal E1P state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2023-02-15
Authors: Liu, Z.M., Mu, J.Q., Xue, C.Y.
PDB entry 8iep: Cryo-EM structure of GPR156C/D of G-protein free GPR156 (local refine)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2023-02-15
Authors: Shin, J., Park, J., Cho, Y.
PDB entry 8ieq: Cryo-EM structure of G-protein free GPR156
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-02-15
Authors: Shin, J., Park, J., Cho, Y.
PDB entry 8ier: Cryo-EM structure of ATP13A2 in the putative of E2 state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.87 Å
Deposited: 2023-02-15
Authors: Liu, Z.M., Mu, J.Q., Xue, C.Y.
PDB entry 8ies: Cryo-EM structure of ATP13A2 in the E1P-ADP state
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2023-02-15
Authors: Liu, Z.M., Mu, J.Q., Xue, C.Y.
PDB entry 8iet: Human SLC26A3 in the apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-02-15
Authors: Li, X.R., Chi, X.M., Zhang, Y.Y., Zhou, Q.
PDB entry 8ieu: Crystal structure of the DUF2891 family protein CJ0554 from Campylobacter jejuni in space group P41212
Classification: UNKNOWN FUNCTION
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-02-16
Authors: Kim, S.Y., Cho, H.Y., Yoon, S.I.
PDB entry 8iev: Crystal structure of the DUF2891 family protein CJ0554 from Campylobacter jejuni in space group C2
Classification: UNKNOWN FUNCTION
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-02-16
Authors: Kim, S.Y., Cho, H.Y., Yoon, S.I.
PDB entry 8iew: Cas005-crRNA-DNA complex
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Biggievirus Mos11
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-16
Authors: Zhang, X., Duan, Z.Q., Zhu, J.K.
PDB entry 8iex: Solution structure of AtWRKY11-DBD
Classification: DNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2023-02-16
Authors: Dong, X., Hu, Y.F.
PDB entry 8iey: Aquifex aeolicus TsaD-TsaB
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-16
Authors: Lu, S.Z., Zhang, W.H.
PDB entry 8if0: NmeHNH-AcrIIC1 complex
Classification: STRUCTURAL PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-02-16
Authors: Zhu, Y.L.
PDB entry 8if2: Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron BQ.1.1 variant spike protein in complex with its receptor ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-02-17
Authors: Kimura, K., Suzuki, T., Hashiguchi, T.
PDB entry 8if3: Structure of human alpha-2/delta-1 with mirogabalin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-02-17
Authors: Kozai, D., Numoto, N., Fujiyoshi, Y.
PDB entry 8if4: Structure of human alpha-2/delta-1 without mirogabalin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-02-17
Authors: Kozai, D., Numoto, N., Fujiyoshi, Y.
PDB entry 8if5: AFB1-AF26 APTAMER COMPLEX
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-02-17
Authors: Xu, G.H., Wang, C., Li, C.G.
PDB entry 8if6: Conformational Dynamics of the D53-D3-D14 Complex in Strigolactone Signaling
Classification: PLANT PROTEIN
Source organism: Oryza sativa subsp. japonica
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.09 Å
Deposited: 2023-02-17
Authors: Liu, S.M., Wang, J.
PDB entry 8if7: Crystal structure of CmnB
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-17
Authors: Chang, C.Y., Toh, S.I., Lo, C.L.
PDB entry 8if8: Arabinosyltransferase AftA
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-17
Authors: Gong, Y.C., Rao, Z.H., Zhang, L.
PDB entry 8ifb: Dibekacin-bound E.coli 70S ribosome in the PURE system
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2023-02-17
Authors: Tomono, J., Asano, K., Chiashi, T., Tanaka, Y., Yokoyama, T.
PDB entry 8ifc: Arbekacin-bound E.coli 70S ribosome in the PURE system
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-02-17
Authors: Tomono, J., Asano, K., Chiashi, T., Tanaka, Y., Yokoyama, T.
PDB entry 8ifd: Dibekacin-added human 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-02-17
Authors: Tomono, J., Asano, K., Chiashi, T., Tanaka, Y., Yokoyama, T.
PDB entry 8ife: Arbekacin-added human 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-02-17
Authors: Tomono, J., Asano, K., Chiashi, T., Tanaka, Y., Yokoyama, T.
PDB entry 8iff: Cryo-EM structure of Arabidopsis phytochrome A.
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-17
Authors: Ma, L., Zhou, C., Wang, J., Guan, Z., Yin, P.
PDB entry 8ifg: Cryo-EM structure of the Clr6S (Clr6-HDAC) complex from S. pombe
Classification: TRANSCRIPTION
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-17
Authors: Zhang, H.Q., Wang, X., Wang, Y.N., Liu, S.M., Zhang, Y., Xu, K., Ji, L.T., Kornberg, R.D.
PDB entry 8ifj: Crystal structure of pyrrolysyl-tRNA synthetase from methanogenic archaeon ISO4-G1
Classification: TRANSLATION
Source organism: methanogenic archaeon mixed culture ISO4-G1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-02-18
Authors: Yanagisawa, T., Tanabe, H., Yokoyama, S.
PDB entry 8ifk: Cryo-EM structure of monomeric SPARTA gRNA-ssDNA target complex
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-02-18
Authors: Zhang, J.T., Jia, N.
PDB entry 8ifl: Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 1
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-02-18
Authors: Zhang, J.T., Jia, N.
PDB entry 8ifm: Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-02-18
Authors: Zhang, J.T., Jia, N.
PDB entry 8ifn: MERS-CoV spike trimer in complex with nanobody VHH-T148
Classification: VIRAL PROTEIN
Source organism: Camelus dromedarius; Middle East respiratory syndrome-related coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-02-19
Authors: Wang, X., Tian, L.
PDB entry 8ifo: Crystal structure of estrogen related receptor-gamma DNA binding domain complexed with Pla2g12b promoter
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-19
Authors: Xu, T., Zhen, X., Liu, J.
PDB entry 8ifp: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-02-19
Authors: Su, H.X., Zhao, W.F., Xie, H., Nie, T.Q., Li, M.J., Xu, Y.C.
PDB entry 8ifq: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 2
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-02-19
Authors: Su, H.X., Zhao, W.F., Xie, H., Nie, T.Q., Li, M.J., Xu, Y.C.
PDB entry 8ifr: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 3
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-02-19
Authors: Su, H.X., Zhao, W.F., Xie, H., Nie, T.Q., Li, M.J., Xu, Y.C.
PDB entry 8ifs: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 7
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-02-19
Authors: Su, H.X., Zhao, W.F., Xie, H., Nie, T.Q., Li, M.J., Xu, Y.C.
PDB entry 8ift: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 10
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-19
Authors: Su, H.X., Zhao, W.F., Xie, H., Nie, T.Q., Li, M.J., Xu, Y.C.
PDB entry 8ifu: HcCCR in NaCl
Classification: MEMBRANE PROTEIN
Source organism: Hyphochytrium catenoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2023-02-19
Authors: Zhang, M.F.
PDB entry 8ifx: Aquifex aeolicus TsaD-TsaB in complex with ADP
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-20
Authors: Lu, S.Z., Zhang, W.H.
PDB entry 8ify: Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 spike protein in complex with white-tailed deer ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Odocoileus virginianus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2023-02-20
Authors: Han, P., Meng, Y.M., Qi, J.X.
PDB entry 8ifz: Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 spike protein receptor-binding domain in complex with white-tailed deer ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Odocoileus virginianus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-02-20
Authors: Han, P., Meng, Y.M., Qi, J.X.
PDB entry 8ig0: Crystal structure of menin in complex with DS-1594b
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-02-20
Authors: Suzuki, M., Yoneyama, T., Imai, E.
PDB entry 8ig1: Crystal structure of wild-type transthyretin in complex with rafoxanide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.451 Å
Deposited: 2023-02-20
Authors: Yokoyama, T.
PDB entry 8ig4: Crystal structure of SARS-Cov-2 main protease in complex with GC376
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-20
Authors: Zhou, X.L., Zhang, J., Li, J.
PDB entry 8ig5: Crystal structure of SARS main protease in complex with GC376
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-02-20
Authors: Lin, C., Zhang, J., Li, J.
PDB entry 8ig6: Crystal structure of MERS main protease in complex with GC376
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-02-20
Authors: Lin, C., Zhang, J., Li, J.
PDB entry 8ig7: Crystal structure of SARS-Cov-2 main protease G15S mutant in complex with GC376
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-02-20
Authors: Zeng, P., Zhang, J., Li, J.
PDB entry 8ig8: Crystal structure of SARS-Cov-2 main protease S46F mutant in complex with GC376
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-02-20
Authors: Zeng, X.Y., Zhang, J., Li, J.
PDB entry 8ig9: Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with GC376
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-02-20
Authors: Zou, X.F., Zhang, J., Li, J.
PDB entry 8iga: Crystal structure of SARS-Cov-2 main protease K90R mutant in complex with GC376
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-02-20
Authors: Wang, J., Zhang, J., Li, J.
PDB entry 8igb: Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with GC376
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-02-20
Authors: Li, W.W., Zhang, J., Li, J.
PDB entry 8igc: Crystal structure of Bak bound to Bnip5 BH3
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.697 Å
Deposited: 2023-02-20
Authors: Ku, B., Lim, D.
PDB entry 8igd: The crystal structure of the minimal interaction domains of DRB7.2:DRB4 complex
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-02-20
Authors: Paturi, S., Deshmukh, M.V.
PDB entry 8igf: Crystal Structure of Human Carbonic Anhydrase II In-complex with 4-Acetylphenylboronic acid at 2.6 A Resolution
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-02-20
Authors: Rasheed, S., Huda, N., Fisher, S.Z., Falke, S., Gul, S., Ahmad, M.S., Choudhary, M.I.
PDB entry 8igg: C2 reconstruction of the concave tetramer in the cube-like assembly of 201Phi2-1 gp105
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas phage 201phi2-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.09 Å
Deposited: 2023-02-20
Authors: Liu, Z., Xiang, Y.
PDB entry 8igi: Crystal structure of HP1526 (XthA)- a base excision DNA repair protein in Helicobacter pylori
Classification: STRUCTURAL PROTEIN
Source organism: Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-02-20
Authors: Dinh, T.T., Dao, O., Lee, K.H.
PDB entry 8igl: Crystal structure of a major fragment of the ASFV inner capsid protein p150
Classification: STRUCTURAL PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-02-20
Authors: Li, H., Liu, Q., Xiang, Y.
PDB entry 8ign: Crystal structure of SARS-CoV-2 main protease in complex with RAY1216
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-02-21
Authors: Huang, X., Zhou, B., Xu, J., Yang, Z., Zhong, N., Xiong, X.
PDB entry 8igo: Crystal structure of apo SARS-CoV-2 main protease
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-21
Authors: Huang, X., Zhou, B., Xu, J., Yang, Z., Zhong, N., Xiong, X.
PDB entry 8igq: Cryo-EM structure of Mycobacterium tuberculosis ADP bound FtsEX/RipC complex in peptidisc
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2023-02-21
Authors: Li, J., Xu, X., Luo, M.
PDB entry 8igr: Cryo-EM structure of CII-dependent transcription activation complex
Classification: TRANSCRIPTION
Source organism: Escherichia coli (strain K12); Escherichia phage Lambda; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-21
Authors: Zhao, M., Gao, B., Wen, A., Feng, Y., Lu, Y.
PDB entry 8igs: Cryo-EM structure of RNAP-promoter open complex at lambda promoter PRE
Classification: TRANSCRIPTION
Source organism: Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-21
Authors: Zhao, M., Gao, B., Wen, A., Feng, Y., Lu, Y.
PDB entry 8igt: Crystal Structure of Intracellular B30.2 Domain of BTN2A1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-02-21
Authors: Yuan, L.J., Yang, Y.Y., Li, X., Cai, N.N., Chen, C.C., Guo, R.T., Zhang, Y.H.
PDB entry 8igu: Hexameric Ring Complex of Engineered V1-ATPase: A3(De)3_empty
Classification: MOTOR PROTEIN
Source organism: Enterococcus hirae ATCC 9790
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2023-02-21
Authors: Kosugi, T., Tanabe, M., Koga, N.
PDB entry 8igv: Hexameric Ring Complex of Engineered V1-ATPase bound to 5 ADPs: A3(De)3_(ADP-Pi)1cat(ADP)2cat,2non-cat
Classification: MOTOR PROTEIN
Source organism: Enterococcus hirae ATCC 9790
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-02-21
Authors: Kosugi, T., Tanabe, M., Koga, N.
PDB entry 8igw: Hexameric Ring Complex of Engineered V1-ATPase bound to 4 ADPs: A3(De)3_(ADP)3cat,1non-cat, Hexameric Ring Complex of Engineered V1-ATPase bound to 5 ADPs: A3(De)3_(ADP)3cat,2non-cat
Classification: MOTOR PROTEIN
Source organism: Enterococcus hirae ATCC 9790
Experimental method: X-RAY DIFFRACTION
Resolution: 4.2 Å
Deposited: 2023-02-21
Authors: Kosugi, T., Tanabe, M., Koga, N.
PDB entry 8igx: SARS-CoV-2 3CL protease (3CLpro) in complex with compound 9 (simnotrelvir, SIM0417, SSD8432)
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-02-21
Authors: Su, H.X., Zhao, W.F., Xie, H., Nie, T.Q., Li, M.J., Xu, Y.C.
PDB entry 8igy: SARS-CoV-2 3CL protease (3CLpro) in complex with nirmatrelvir
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-02-21
Authors: Su, H.X., Zhao, W.F., Xie, H., Nie, T.Q., Li, M.J., Xu, Y.C.
PDB entry 8igz: Xcc NAMPT Quadruple mutant
Classification: TRANSFERASE
Source organism: Xanthomonas campestris pv. campestris str. 8004
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-02-21
Authors: Xu, G.L., Ming, Z.H.
PDB entry 8ih0: Crystal structure of GH11 from Thermoanaerobacterium saccharolyticum
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-02-22
Authors: Nam, K.H.
PDB entry 8ih1: Room temperature structure of GH11 from Thermoanaerobacterium saccharolyticum by serial crystallography
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-22
Authors: Nam, K.H.
PDB entry 8ih4: Crystal Structure of Intracellular B30.2 Domain of BTN2A2 Mutant
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-02-22
Authors: Yang, Y.Y., Yi, S.M., Zhang, M.T., Chen, C.C., Guo, R.T., Zhang, Y.H.
PDB entry 8ih5: The cryo-EM structure of OsCyc1 that complexed with GGPP
Classification: PLANT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-02-22
Authors: Ma, X.L., Xu, H.F., Jiang, T.
PDB entry 8ih6: Crystal structure of decarboxylase-hydratase complex from Pseudomonas species AP-3
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.519 Å
Deposited: 2023-02-22
Authors: Shi, Q.L., Su, D.
PDB entry 8ih7: AmnG-AmnH complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-02-22
Authors: Su, D., Shi, Q.L.
PDB entry 8ih8: anti-sigmaF factor and Anti-sigmaF factor antagonist complex(usfx-RsfB)
Classification: TRANSCRIPTION
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-22
Authors: Chen, Y.J., Su, D.
PDB entry 8iha: Polyketone cyclase Rv2186c in Mycobacterium tuberculosis H37Rv
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-02-22
Authors: Chen, Y.J., Su, D.
PDB entry 8ihb: Cryo-EM structure of HCA2-Gi complex with GSK256073
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-02-22
Authors: Suzuki, S., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8ihe: Rv1122(gnd2) in Mycobacterium tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-02-22
Authors: Chen, Y.J., Su, D.
PDB entry 8ihf: Cryo-EM structure of HCA2-Gi complex with MK6892
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-02-22
Authors: Suzuki, S., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8ihg: Crystal structure of aminophenol dioxygenase from Pseudomonas species AP-3
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.858 Å
Deposited: 2023-02-22
Authors: Shi, Q.L., Su, D.
PDB entry 8ihh: Cryo-EM structure of HCA2-Gi complex with LUF6283
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-02-22
Authors: Suzuki, S., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8ihi: Cryo-EM structure of HCA2-Gi complex with acifran
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-02-22
Authors: Suzuki, S., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8ihj: Cryo-EM structure of HCA3-Gi complex with acifran
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-02-22
Authors: Suzuki, S., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8ihk: Cryo-EM structure of HCA3-Gi complex with acifran (local)
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-02-22
Authors: Suzuki, S., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8ihl: Overlapping tri-nucleosome
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.64 Å
Deposited: 2023-02-23
Authors: Nishimura, M., Fujii, T., Tanaka, H., Maehara, K., Nozawa, K., Takizawa, Y., Ohkawa, Y., Kurumizaka, H.
PDB entry 8ihm: Eaf3 CHD domain bound to the nucleosome
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-02-23
Authors: Zhang, Y., Gang, C.
PDB entry 8ihn: Cryo-EM structure of the Rpd3S core complex
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-02-23
Authors: Zhang, Y., Gang, C.
PDB entry 8iho: Crystal structures of SARS-CoV-2 papain-like protease in complex with covalent inhibitors
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-02-23
Authors: Wang, Q., Hu, H., Li, M., Xu, Y.
PDB entry 8ihp: Structure of Semliki Forest virus VLP in complex with the receptor VLDLR-LA3
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Semliki Forest virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-23
Authors: Cao, D., Ma, B., Cao, Z., Zhang, X., Xiang, Y.
PDB entry 8ihq: Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3
Classification: HYDROLASE
Source organism: Stenotrophomonas acidaminiphila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2023-02-23
Authors: Dai, L.H., Niu, D., Huang, J.-W., Li, X., Shen, P.P., Li, H., Hu, Y.M., Yang, Y., Chen, C.-C., Guo, R.-T.
PDB entry 8ihr: Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3 in complex with Phe
Classification: HYDROLASE
Source organism: Stenotrophomonas acidaminiphila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-02-23
Authors: Dai, L.H., Niu, D., Huang, J.-W., Li, X., Shen, P.P., Li, H., Hu, Y.M., Yang, Y., Chen, C.-C., Guo, R.-T.
PDB entry 8ihs: Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3 in complex with ochratoxin A
Classification: HYDROLASE
Source organism: Stenotrophomonas acidaminiphila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-02-23
Authors: Dai, L.H., Niu, D., Huang, J.-W., Li, X., Shen, P.P., Li, H., Hu, Y.M., Yang, Y., Chen, C.-C., Guo, R.-T.
PDB entry 8iht: Rpd3S bound to the nucleosome
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2023-02-23
Authors: Zhang, Y., Gang, C.
PDB entry 8ihu: Cryo-EM structure of an amyloid fibril formed by ALS-causing SOD1 mutation G85R
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-02-23
Authors: Wang, L.Q., Ma, Y.Y., Zhang, M.Y., Yuan, H.Y., Li, X.N., Zhao, K., Chen, J., Li, D., Wang, Z.Z., Le, W.D., Liu, C., Liang, Y.
PDB entry 8ihv: Cryo-EM structure of an amyloid fibril formed by ALS-causing SOD1 mutation H46R
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-02-23
Authors: Wang, L.Q., Ma, Y.Y., Zhang, M.Y., Yuan, H.Y., Li, X.N., Zhao, K., Chen, J., Li, D., Wang, Z.Z., Le, W.D., Liu, C., Liang, Y.
PDB entry 8ihw: X-ray crystal structure of D43R mutant of endo-1,4-beta glucanase from Eisenia fetida
Classification: HYDROLASE
Source organism: Eisenia fetida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-02-24
Authors: Kuroki, C., Hirano, Y., Nakazawa, M., Sakamoto, T., Tamada, T., Ueda, M.
PDB entry 8ihx: X-ray crystal structure of N372D mutant of endo-1,4-beta glucanase from Eisenia fetida
Classification: HYDROLASE
Source organism: Eisenia fetida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-02-24
Authors: Kuroki, C., Hirano, Y., Nakazawa, M., Sakamoto, T., Tamada, T., Ueda, M.
PDB entry 8ihy: X-ray crystal structure of Q387E mutant of endo-1,4-beta glucanase from Eisenia fetida
Classification: HYDROLASE
Source organism: Eisenia fetida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-02-24
Authors: Kuroki, C., Hirano, Y., Nakazawa, M., Sakamoto, T., Tamada, T., Ueda, M.
PDB entry 8ihz: FACTOR INHIBITING HIF-1 ALPHA in complex with (5-(1-(3-(4-chlorophenyl)propyl)-1H-1,2,3-triazol-4-yl)-3-hydroxypicolinoyl)glycine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2023-02-24
Authors: Nakashima, Y., Corner, T., Zhang, X., Schofield, C.J.
PDB entry 8ii0: FACTOR INHIBITING HIF-1 ALPHA in complex with (5-(3-(3-chlorophenyl)isoxazol-5-yl)-3-hydroxypicolinoyl)glycine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2023-02-24
Authors: Nakashima, Y., Corner, T., Zhang, X., Schofield, C.J.
PDB entry 8ii1: Crystal structure of V30M-TTR in complex with BID
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.907 Å
Deposited: 2023-02-24
Authors: Yokoyama, T.
PDB entry 8ii2: Crystal structure of V30M-TTR in complex with BBM
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.798 Å
Deposited: 2023-02-24
Authors: Yokoyama, T.
PDB entry 8ii3: Crystal structure of V30M-TTR in complex with 6-hydroxy BID
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.399 Å
Deposited: 2023-02-24
Authors: Yokoyama, T.
PDB entry 8ii4: Crystal structure of V30M-TTR in complex with 6-hydroxy BBM
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2023-02-24
Authors: Yokoyama, T.
PDB entry 8ii8: X-ray crystal structure of pink-colored protein from Pleurotus salmoneostramineus in complex with natural chromophore
Classification: LIPID BINDING PROTEIN
Source organism: Pleurotus salmoneostramineus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-02-24
Authors: Ihara, M., Fukuta, Y., Shirasaka, N.