LiteFold/PDB huggingface dataset:
PDB entry 7ur0: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and scaffold-insert duplexes (21mer and 10mer) containing the cognate REPE54 sequence and an additional T-A rich sequence, respectively.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-04-20
Authors: Orun, A.R., Snow, C.D.
PDB entry 7ur1: SARS-CoV-2 Spike-derived peptide S1215-1224 (YIWLGFIAGL) presented by HLA-A*02:01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-04-21
Authors: Szeto, C., Ahn, Y.M., Gras, S.
PDB entry 7ur2: Crystal structure of the Sec14 domain of the RhoGEF Kalirin
Classification: LIPID BINDING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-04-21
Authors: Li, Y., Doukov, T.I., Hao, B.
PDB entry 7ur3: Hsp90 alpha inhibitor
Classification: CHAPERONE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-04-21
Authors: Deng, J., Peng, S., Balch, M., Matts, R.
PDB entry 7ur4: Cryo-EM Structure of the Neutralizing Antibody MPV467 in Complex with Prefusion Human Metapneumovirus F Glycoprotein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2022-04-21
Authors: Rush, S.A., McLellan, J.S.
PDB entry 7ur5: allo-tRNAUTu1 in the A, P, and E sites of the E. coli ribosome
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-04-21
Authors: Zhang, J., Krahn, N., Prabhakar, A., Vargas-Rodriguez, O., Krupkin, M., Fu, Z., Acosta-Reyes, F.J., Ge, X., Choi, J., Crnkovic, A., Ehrenberg, M., Viani Puglisi, E., Soll, D., Puglisi, J.
PDB entry 7ur6: Cryo-EM structure of SHIV-elicited, FP-directed Rhesus Fab RM6561.DH1021.14 in complex with stabilized HIV-1 Env Ce1176 DS-SOSIP.664
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2022-04-21
Authors: Gorman, J., Kwong, P.D.
PDB entry 7ur7: 17_bp_sh3, a small beta-barrel de novo designed protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2022-04-21
Authors: Bera, A.K., Kim, D., Baker, D.
PDB entry 7ur8: 170_h_ob, a small beta-barrel de novo designed protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-04-21
Authors: Bera, A.K., Kim, D., Baker, D.
PDB entry 7ur9: SARS-Cov2 Main protease in complex with inhibitor CDD-1845
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2022-04-21
Authors: Lu, S., Palzkill, T.
PDB entry 7ura: Human PORCN in complex with Palmitoleoyl-CoA
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2022-04-21
Authors: Liu, Y., Qi, X., Li, X.
PDB entry 7urb: Sars-Cov2 Main Protease in complex with CDD-1733
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2022-04-21
Authors: Lu, S., Palzkill, T., Matzuk, M.M., Judge, A.
PDB entry 7urc: Human PORCN in complex with LGK974
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-04-21
Authors: Liu, Y., Qi, X., Li, X.
PDB entry 7urd: Human PORCN in complex with LGK974 and WNT3A peptide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2022-04-21
Authors: Liu, Y., Qi, X., Li, X.
PDB entry 7ure: Human PORCN in complex with palmitoleoylated WNT3A peptide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2022-04-21
Authors: Liu, Y., Qi, X., Li, X.
PDB entry 7urf: Human HHAT H379C in complex with SHH N-terminal peptide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-04-21
Authors: Liu, Y., Qi, X., Li, X.
PDB entry 7urg: cryo-EM structure of ribonucleotide reductase from Synechococcus phage S-CBP4 bound with TTP
Classification: OXIDOREDUCTASE
Source organism: Synechococcus phage S-CBP4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2022-04-21
Authors: Xu, D., Burnim, A.A., Ando, N.
PDB entry 7urh: Crystal structure of Ferritin 2 from Caenorhabditis elegans, FTN-2
Classification: OXIDOREDUCTASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.468 Å
Deposited: 2022-04-22
Authors: Malcolm, T.R., Maher, M.J., Mubarak, S.S.M.
PDB entry 7uri: allo-tRNAUTu1A in the A site of the E. coli ribosome
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-04-22
Authors: Zhang, J., Prabhakar, A., Krahn, N., Vargas-Rodriguez, O., Krupkin, M., Fu, Z., Acosta-Reyes, F.J., Ge, X., Choi, J., Crnkovic, A., Ehrenberg, M., Viani Puglisi, E., Soll, D., Puglisi, J.
PDB entry 7urj: Backbone-modified variant of the B domain of Staphylococcal protein A: beta3- and ACPC-residues in helix 2
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-04-22
Authors: Santhouse, J.R., Leung, J.M.G., Chong, L.T., Horne, W.S.
PDB entry 7urk: Self-assembling DNA tensegrity triangle motif with intercalating internal Cy3 modification
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2022-04-22
Authors: Sha, R., Vecchioni, S.
PDB entry 7url: The crystal structure of anti-HIV_scFv
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2022-04-22
Authors: Chen, S.H., Snow, C.D.
PDB entry 7urm: allo-tRNAUTu1A in the P site of the E. coli ribosome
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-22
Authors: Zhang, J., Prabhakar, A., Krahn, N., Vargas-Rodriguez, O., Krupkin, M., Fu, Z., Acosta-Reyes, F.J., Ge, X., Choi, J., Crnkovic, A., Ehrenberg, M., Viani Puglisi, E., Soll, D., Puglisi, J.
PDB entry 7urn: Structure of HIV-1 capsid declination
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2022-04-22
Authors: Pornillos, O., Ganser-Pornillos, B.K., Schirra, R.T.
PDB entry 7uro: Gea2-Arf1 activation intermediate complex (composite structure)
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2022-04-22
Authors: Muccini, A., Fromme, J.C.
PDB entry 7urp: Second cohesin module from Sca5 of Ruminococcus bromii
Classification: PROTEIN BINDING
Source organism: Ruminococcus bromii L2-63
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2022-04-22
Authors: Cerqueira, F., Koropatkin, N.
PDB entry 7urq: Crystal Structure of SARS-CoV-2 S delta variant receptor-binding domain (RBD) in complex CoV11 Fab crystal form 1
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-04-22
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 7urr: Gea2 closed/open conformation (composite structure)
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2022-04-22
Authors: Muccini, A., Fromme, J.C.
PDB entry 7urs: Crystal Structure of SARS-CoV-2 S delta variant receptor-binding domain (RBD) in complex CoV11 Fab crystal form 2
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-04-22
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 7urt: T=1 particle HIV-1 CA G60A/G61P/M66A
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2022-04-22
Authors: Pornillos, O., Ganser-Pornillos, B.K., Schirra, R.T.
PDB entry 7uru: Crystal structure of the low affinity Fc gamma receptor IIIA variant in complex with the Fc of IgG1.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-04-22
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 7urv: FMC63 scFv in complex with soluble CD19
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2022-04-22
Authors: Meyerson, J., He, C.
PDB entry 7urw: Tetradecameric hub domain of CaMKII beta
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2022-04-22
Authors: Ozden, C., Samkutty, A., Stratton, M.M., Garman, S.C.
PDB entry 7urx: SJ25C1 Fab in complex with soluble CD19
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-04-22
Authors: Meyerson, J., He, C.
PDB entry 7ury: Tetradecameric hub domain of CaMKII beta
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2022-04-22
Authors: Ozden, C., Saha, S., Samkutty, A., Stratton, M.M., Garman, S.C., Perry, S.L.
PDB entry 7urz: Hexadecameric hub domain of CaMKII beta
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2022-04-22
Authors: Ozden, C., Samkutty, A., Stratton, M.M., Garman, S.C.
PDB entry 7us1: Structure of parkin (R0RB) bound to two phospho-ubiquitin molecules
Classification: LIGASE
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.484 Å
Deposited: 2022-04-22
Authors: Fakih, R., Sauve, V., Gehring, K.
PDB entry 7us2: PARL-cleaved Skd3 (human ClpB) E455Q Nucleotide Binding Domain hexamer bound to ATPgammaS, open conformation
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2022-04-22
Authors: Gupta, A., Lentzsch, A.M., Siegel, A.S., Yu, Z., Lu, C., Chio, U.S., Cheng, Y., Shan, S.-o.
PDB entry 7us3: Structure of Putrescine N-hydroxylase Involved Complexed with NADP+
Classification: FLAVOPROTEIN
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-04-22
Authors: Tanner, J.J., Bogner, A.N.
PDB entry 7us4: Sars-Cov2 Main Protease in complex with CDD-1819
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2022-04-22
Authors: Lu, S., Palzkill, T., Matzuk, M.M., Judge, A.
PDB entry 7us5: X-ray crystal structure of GDP-D-glycero-D-manno-heptose 4,6-Dehydratase from Campylobacter jejuni
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-04-23
Authors: Thoden, J.B., Xiang, D.F., Raushel, F.M., Holden, H.M.
PDB entry 7us6: Structure of the human coronavirus CCoV-HuPn-2018 spike glycoprotein with domain 0 in the proximal conformation
Classification: VIRAL PROTEIN
Source organism: unidentified human coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-04-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7us7: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain in complex with 6-(4-(dimethylamino)but-1-yn-1-yl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-04-23
Authors: Li, H., Poulos, T.L.
PDB entry 7us8: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain in complex with 6-(4-(dimethylamino)butyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-04-23
Authors: Li, H., Poulos, T.L.
PDB entry 7us9: CCoV-HuPn-2018 S in the proximal conformation (local refinement of domain 0)
Classification: VIRAL PROTEIN
Source organism: unidentified human coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-04-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7usa: Structure of the human coronavirus CCoV-HuPn-2018 spike glycoprotein with domain 0 in the swung out conformation
Classification: VIRAL PROTEIN
Source organism: unidentified human coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-04-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7usb: CCoV-HuPn-2018 S in the swung out conformation (local refinement of domain 0)
Classification: VIRAL PROTEIN
Source organism: unidentified human coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-04-23
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7usc: Cryo-EM structure of WAVE Regulatory Complex
Classification: CELL INVASION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-25
Authors: Ding, B., Yang, S., Chen, B., Chowdhury, S.
PDB entry 7usd: Cryo-EM structure of D-site Rac1-bound WAVE Regulatory Complex
Classification: CELL INVASION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-25
Authors: Ding, B., Yang, S., Chen, B., Chowdhury, S.
PDB entry 7use: Cryo-EM structure of WAVE regulatory complex with Rac1 bound on both A and D site
Classification: CELL INVASION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-25
Authors: Ding, B., Yang, S., Chen, B., Chowdhury, S.
PDB entry 7usf: Mouse mammary tumor virus strand transfer complex intasome
Classification: HYDROLASE/DNA
Source organism: Mouse mammary tumor virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-04-25
Authors: Jozwik, I., Lyumkis, D.
PDB entry 7usg: BRD2-BD2 in complex with MDP5
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-04-25
Authors: Jayasinghe, T.D., Ronning, D.R.
PDB entry 7ush: BRD2-BD2 in complex with SF2523
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2022-04-25
Authors: Jayasinghe, T.D., Ronning, D.R.
PDB entry 7usi: BRD2-BD1 in complex with MDP5
Classification: TRANSCRIPTON/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-04-25
Authors: Jayasinghe, T.D., Ronning, D.R.
PDB entry 7usj: BRD4-BD2 in complex with SF2523
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2022-04-25
Authors: Jayasinghe, T.D., Ronning, D.R.
PDB entry 7usk: BRD4-BD2 Ligand free
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2022-04-25
Authors: Jayasinghe, T.D., Ronning, D.R.
PDB entry 7usl: Integrin alphaM/beta2 ectodomain in complex with adenylate cyclase toxin RTX751 and M1F5 Fab
Classification: TOXIN
Source organism: Bordetella pertussis; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-04-25
Authors: Goldsmith, J.A., McLellan, J.S.
PDB entry 7usm: Integrin alphaM/beta2 ectodomain
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-04-25
Authors: Goldsmith, J.A., McLellan, J.S.
PDB entry 7usn: Crystal structure of ferritin 1 from Caenorhabditis elegans, FTN-1
Classification: OXIDOREDUCTASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.789 Å
Deposited: 2022-04-25
Authors: Malcolm, T.R., Maher, M.J., Mubarak, S.S.M.
PDB entry 7uso: Crystal Structure of Caspase-3 with Peptide Inhibitor AcITVKD-CHO
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-04-25
Authors: Fuller, J.L., Finzel, B.C.
PDB entry 7usp: Crystal Structure of Caspase-3 with Peptide Inhibitor AcITV(Orn)D-CHO
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-04-25
Authors: Fuller, J.L., Finzel, B.C.
PDB entry 7usq: Crystal Structure of Caspase-3 with Peptide Inhibitor AcDVPD-CHO
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2022-04-25
Authors: Fuller, J.L., Finzel, B.C.
PDB entry 7usr: Plasmodium falciparum protein Pfs230 D1D2 - Structure of the first two 6-cysteine domains
Classification: CELL ADHESION
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-04-25
Authors: Dietrich, M.H., Tham, W.H.
PDB entry 7uss: Plasmodium falciparum protein Pfs230 Pro-D1D2 - Structure of the first two 6-cysteine domains with N-terminal extension
Classification: CELL ADHESION
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-04-25
Authors: Dietrich, M.H., Tham, W.H.
PDB entry 7ust: Plasmodium falciparum protein Pfs230 D1 in complex with nanobody F5
Classification: PROTEIN BINDING/IMMUNE SYSTEM
Source organism: Plasmodium falciparum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-04-25
Authors: Dietrich, M.H., Tham, W.H.
PDB entry 7usv: Plasmodium falciparum protein Pfs230 D1 in complex with nanobody F10
Classification: PROTEIN BINDING/IMMUNE SYSTEM
Source organism: Plasmodium falciparum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-04-25
Authors: Dietrich, M.H., Tham, W.H.
PDB entry 7usw: Structure of Expanded C. elegans TMC-1 complex
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-04-26
Authors: Jeong, H., Clark, S., Gouaux, E.
PDB entry 7usx: Structure of Contracted C. elegans TMC-1 complex
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-04-26
Authors: Jeong, H., Clark, S., Gouaux, E.
PDB entry 7usy: Structure of C. elegans TMC-1 complex with ARRD-6
Classification: MEMBRANE PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2022-04-26
Authors: Jeong, H., Clark, S., Gouaux, E.
PDB entry 7usz: Human DDAH-1, holo (Zn-bound) form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-04-26
Authors: Smith, C.A., Ghebre, Y.T.
PDB entry 7ut0: Human DDAH-1, apo form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2022-04-26
Authors: Smith, C.A., Ghebre, Y.T.
PDB entry 7ut1: Higher-order assembly of multiple MMTV strand transfer complex intasomes
Classification: HYDROLASE/DNA
Source organism: Mouse mammary tumor virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-04-26
Authors: Jozwik, I., Lyumkis, D.
PDB entry 7ut3: Crystal structure of complex of Fab, G10C with GalNAc-pNP
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-04-26
Authors: Li, M., Wlodawer, A.
PDB entry 7ut4: Gea2 closed/closed conformation (composite structure)
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-04-26
Authors: Muccini, A., Fromme, J.C.
PDB entry 7ut5: Acinetobacter baumannii dihydroorotate dehydrogenase bound with inhibitor DSM186
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-04-26
Authors: Deng, X., Phillips, M., Tomchick, D.
PDB entry 7ut6: C1 symmetric cryoEM structure of Azotobacter vinelandii MoFeP under non-turnover conditions
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.91 Å
Deposited: 2022-04-26
Authors: Rutledge, H.L., Cook, B., Tezcan, F.A., Herzik, M.A.
PDB entry 7ut7: C2 symmetric cryoEM structure of Azotobacter vinelandii MoFeP under non-turnover conditions
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.91 Å
Deposited: 2022-04-26
Authors: Rutledge, H.L., Cook, B.D., Tezcan, F.A., Herzik, M.A.
PDB entry 7ut8: CryoEM structure of Azotobacter vinelandii nitrogenase complex (1:1 FeP:MoFeP, ATP-bound) during catalytic N2 reduction
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2022-04-26
Authors: Rutledge, H.L., Cook, B., Tezcan, F.A., Herzik, M.A.
PDB entry 7ut9: CryoEM structure of Azotobacter vinelandii nitrogenase complex (1:1 FeP:MoFeP, ADP/ATP-bound) during catalytic N2 reduction
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2022-04-26
Authors: Rutledge, H.L., Cook, B., Tezcan, F.A., Herzik, M.A.
PDB entry 7uta: CryoEM structure of Azotobacter vinelandii nitrogenase complex (2:1 FeP:MoFeP) inhibited by BeFx during catalytic N2 reduction
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-04-26
Authors: Rutledge, H.L., Cook, B.D., Nguyen, H.P.M., Tezcan, F.A., Herzik, M.A.
PDB entry 7utb: KPC-2 CARBAPENEMASE IN COMPLEX WITH THE BORONIC ACID INHIBITOR MB_076
Classification: HYDROLASE/INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2022-04-26
Authors: van den Akker, F., Alsenani, T.A.
PDB entry 7utc: Crystal structure of secondary alcohol dehydrogenases from the Thermoanaerobacter ethanolicus with NADP and transition-state analogue inhibitor DMSO
Classification: OXIDOREDUCTASE
Source organism: Thermoanaerobacter pseudethanolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-04-26
Authors: Dinh, T., Phillips, R.
PDB entry 7utd: The 2.19-angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Complex minus stalk
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2022-04-26
Authors: Grinter, R., Venugopal, H., Kropp, A., Greening, C.
PDB entry 7ute: MicroED structure of Aeropyrum pernix protoglobin mutant
Classification: METAL BINDING PROTEIN
Source organism: Aeropyrum pernix
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.1 Å
Deposited: 2022-04-26
Authors: Danelius, E., Gonen, T., Unge, J.T.
PDB entry 7utf: Structure-Function characterization of an aldo-keto reductase involved in detoxification of the mycotoxin, deoxynivalenol
Classification: OXIDOREDUCTASE
Source organism: Rhizobium leguminosarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-04-26
Authors: Abraham, N., Schroeter, K.L., Kimber, M.S., Seah, S.Y.K.
PDB entry 7utg: 2D9 nanobody to BCL11A-exZF23 fragment
Classification: PEPTIDE BINDING PROTEIN
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2022-04-26
Authors: Dassama, L.M.K., Zhai, L.
PDB entry 7uth: Gea2 open/open conformation (composite structure)
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-04-26
Authors: Muccini, A., Fromme, J.C.
PDB entry 7uti: ALTERNATIVE MODELING OF TROPOMYOSIN IN HUMAN CARDIAC THIN FILAMENT IN THE CALCIUM BOUND STATE
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2022-04-27
Authors: Rynkiewicz, M.J., Pavadai, E., Lehman, W.
PDB entry 7utj: Cryogenic electron microscopy 3D map of F-actin bound by human dimeric alpha-catenin
Classification: CELL ADHESION
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-04-27
Authors: Rangarajan, E.S., Smith, E.W., Izard, T.
PDB entry 7utl: ALTERNATIVE MODELING OF TROPOMYOSIN IN HUMAN CARDIAC THIN FILAMENT IN THE CALCIUM FREE STATE
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2022-04-27
Authors: Rynkiewicz, M.J., Pavadai, E., Lehman, W.
PDB entry 7utn: IscB and wRNA bound to Target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2022-04-27
Authors: Schuler, G.A., Hu, C., Ke, A.
PDB entry 7utp: CPV Affinity Purified Polyclonal Fab A Site Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-04-27
Authors: Hartmann, S.R., Hafenstein, S.L., Charnesky, A.J.
PDB entry 7utr: CPV Affinity Purified Polyclonal Fab B Site Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Canine parvovirus type 2 (isolate Dog/United States/CPV-b/1978); Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-04-27
Authors: Hartmann, S.R., Hafenstein, S.L., Charnesky, A.J.
PDB entry 7uts: CPV Total-Fab Polyclonal A Site Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-04-27
Authors: Hartmann, S.R., Hafenstein, S.L., Charnesky, A.J.
PDB entry 7utt: Structure of Non-hydrolyzable ATP (ApCpp) binds to Cyclic GMP AMP synthase (cGAS) through Mn coordination
Classification: Transferase/DNA
Source organism: DNA molecule; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-04-27
Authors: Wu, S., Gabelli, S.B., Sohn, J.
PDB entry 7utu: CPV Total-Fab Polyclonal B Site Fab (1 of 2)
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-27
Authors: Hartmann, S.R., Hafenstein, S.L., Charnesky, A.J.
PDB entry 7utv: CPV Total-Fab Polyclonal B Site Fab (2 of 2)
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Canine parvovirus strain B; Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-27
Authors: Hartmann, S.R., Hafenstein, S.L., Charnesky, A.J.
PDB entry 7utw: Cd-substituted Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2022-04-27
Authors: Zheng, C., Boxer, S.G.
PDB entry 7uty: First bromodomain of BRD4 liganded with compound 2c
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-04-28
Authors: Schonbrunn, E., Chan, A.
PDB entry 7utz: Human thyrotropin analog TR1402 bound to human Thyrotropin receptor in complex with miniGs399 (composite structure)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-04-28
Authors: Faust, B., Cheng, Y., Manglik, A.
PDB entry 7uu0: Crystal structure of the BRD2-BD2 in complex with a ligand
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-04-28
Authors: Kalra, P., Shi, K., Aihara, H., Pomerantz, W.C.K.
PDB entry 7uu3: Crystal structure of APOBEC3G complex with 3'overhangs RNA-Complex
Classification: HYDROLASE/RNA
Source organism: Macaca mulatta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.099 Å
Deposited: 2022-04-28
Authors: Yang, H., Li, S., Chen, X.S.
PDB entry 7uu4: Crystal structure of APOBEC3G complex with ssRNA
Classification: HYDROLASE/RNA
Source organism: Macaca mulatta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-04-28
Authors: Yang, H., Li, S., Chen, X.S.
PDB entry 7uu5: Crystal structure of APOBEC3G complex with 5'-Overhang dsRNA
Classification: HYDROLASE/RNA
Source organism: Macaca mulatta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-04-28
Authors: Yang, H., Li, S., Chen, X.S.
PDB entry 7uu6: Crystal structure of the SARS-CoV-2 main protease in its apo-form
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uu7: Crystal structure of the SARS-CoV-2 main protease in its apo-form
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uu8: Crystal structure of the SARS-CoV-2 main protease in its apo-form
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uu9: Crystal structure of the SARS-CoV-2 main protease in its apo-form
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uua: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI8
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uub: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI12
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uuc: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI19
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uud: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI33
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uue: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI85
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-04-28
Authors: Yang, K.S., Liu, W.R.
PDB entry 7uug: SARS-CoV-2 Main Protease S144A (Mpro S144A) in Complex with ML1006a
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-04-28
Authors: Westberg, M., Fernandez, D., Lin, M.Z.
PDB entry 7uuh: The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001034732-2 (cis-form)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Luxembourg/43/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-04-28
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 7uui: Nucleoplasmic pre-60S intermediate of the Nog2 containing post-rotation state from a SPB1 D52A strain
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-04-28
Authors: Sekulski, K., Cruz, V.E., Weirich, C.S., Erzberger, J.P.
PDB entry 7uuj: Crystal structure of aminoglycoside resistance enzyme ApmA, complex with gentamicin
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-04-28
Authors: Stogios, P.J., Evdokimova, E., Osipiuk, J., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 7uuk: Crystal structure of aminoglycoside resistance enzyme ApmA, complex with tobramycin
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2022-04-28
Authors: Stogios, P.J., Evdokimova, E., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 7uul: Crystal structure of aminoglycoside resistance enzyme ApmA, complex with kanamycin B and coenzyme A
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-04-28
Authors: Stogios, P.J., Evdokimova, E., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 7uum: Crystal structure of aminoglycoside resistance enzyme ApmA, complex with paromomycin and coenzyme A
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2022-04-28
Authors: Stogios, P.J., Evdokimova, E., Osipiuk, J., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 7uun: Crystal structure of aminoglycoside resistance enzyme ApmA, complex with neomycin
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2022-04-28
Authors: Stogios, P.J., Evdokimova, E., Di Leo, R., Osipiuk, J., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 7uuo: Crystal structure of aminoglycoside resistance enzyme ApmA H135A mutant, complex with tobramycin and coenzyme A
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-04-28
Authors: Stogios, P.J., Evdokimova, E., Michalska, K., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 7uup: SARS-CoV-2 Main Protease S144A (Mpro S144A) in Complex with Nirmatrelvir (PF-07321332)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-04-28
Authors: Westberg, M., Fernandez, D., Lin, M.Z.
PDB entry 7uuq: Cryo-EM of self-assembling pyrene IDP
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-04-28
Authors: Wang, F., Guo, J., Xu, B., Egelman, E.H.
PDB entry 7uur: The 1.67 Angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.67 Å
Deposited: 2022-04-28
Authors: Grinter, R., Venugopal, H., Kropp, A., Greening, C.
PDB entry 7uus: The CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Full complex focused refinement of stalk
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2022-04-28
Authors: Grinter, R., Venugopal, H., Kropp, A., Greening, C.
PDB entry 7uut: Ternary complex crystal structure of secondary alcohol dehydrogenases from the Thermoanaerobacter ethanolicus mutants C295A and I86A provides better understanding of catalytic mechanism
Classification: OXIDOREDUCTASE
Source organism: Thermoanaerobacter pseudethanolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-04-28
Authors: Dinh, T., Phillips, R., Rahn, K.
PDB entry 7uuu: First bromodomain of BRDT liganded with compound 2c
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-04-29
Authors: Schonbrunn, E., Chan, A.
PDB entry 7uuw: Cryogenic electron microscopy 3D map of F-actin bound by the Actin Binding Domain of alpha-catenin ortholog, HMP1
Classification: CELL ADHESION
Source organism: Caenorhabditis elegans; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-04-29
Authors: Rangarajan, E.S., Smith, E.W., Izard, T.
PDB entry 7uux: ATP binds to Cyclic GMP AMP synthase (cGAS) through Mg coordination
Classification: Transferase/DNA
Source organism: DNA molecule; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-04-29
Authors: Wu, S., Gabelli, S.B., Sohn, J.
PDB entry 7uuy: Structure of the sodium/iodide symporter (NIS)
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-04-29
Authors: Ravera, S., Nicola, J.P., Salazar-De Simone, G., Sigworth, F., Karakas, E., Amzel, L.M., Bianchet, M., Carrasco, N.
PDB entry 7uuz: Structure of the sodium/iodide symporter (NIS) in complex with perrhenate and sodium
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-04-29
Authors: Ravera, S., Nicola, J.P., Salazar-De Simone, G., Sigworth, F., Karakas, E., Amzel, L.M., Bianchet, M., Carrasco, N.
PDB entry 7uv0: Structure of the sodium/iodide symporter (NIS) in complex with iodide and sodium
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-04-29
Authors: Ravera, S., Nicola, J.P., Salazar-De Simone, G., Sigworth, F., Karakas, E., Amzel, L.M., Bianchet, M., Carrasco, N.
PDB entry 7uv1: Vicilin Ana o 1.0101 leader sequence residues 20-75
Classification: ALLERGEN
Source organism: Anacardium occidentale
Experimental method: SOLUTION NMR
Deposited: 2022-04-29
Authors: Mueller, G.A., Foo, A.C.Y., DeRose, E.F.
PDB entry 7uv2: Ana o 1 Leader Sequence Residues 82-132
Classification: ALLERGEN
Source organism: Anacardium occidentale
Experimental method: SOLUTION NMR
Deposited: 2022-04-29
Authors: Mueller, G.A., Foo, A.C.Y., DeRose, E.F.
PDB entry 7uv3: Pis v 3.0101 Vicilin Leader Sequence Residues 5-52
Classification: ALLERGEN
Source organism: Pistacia vera
Experimental method: SOLUTION NMR
Deposited: 2022-04-29
Authors: Mueller, G.A., Foo, A.C.Y., DeRose, E.F.
PDB entry 7uv4: Pis v 3.0101 vicilin leader sequence residues 56-115
Classification: ALLERGEN
Source organism: Pistacia vera
Experimental method: SOLUTION NMR
Deposited: 2022-04-29
Authors: Mueller, G.A., Foo, A.C.Y., DeRose, E.F.
PDB entry 7uv5: The crystal structure of Papain-Like Protease of SARS CoV-2, C111S/D286N mutant, in complex with a Lys48-linked di-ubiquitin
Classification: HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-04-29
Authors: Osipiuk, J., Tesar, C., Endres, M., Lanham, B.T., Wydorski, P., Fushman, D., Joachimiak, L., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7uv6: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and scaffold duplex (21mer) containing the cognate REPE54 sequence and an insert duplex (10mer) with guest TAMRA-labelled thymine and G-C rich sequence.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2022-04-29
Authors: Orun, A.R., Snow, C.D.
PDB entry 7uv7: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and scaffold duplex (21mer) containing the cognate REPE54 sequence and an insert duplex (10mer) with guest TAMRA-labelled thymine and T-A rich sequence.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2022-04-29
Authors: Orun, A.R., Snow, C.D.
PDB entry 7uv8: Rad6-Bre1 Complex
Classification: TRANSFERASE/LIGASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-04-29
Authors: Shukla, P.K., Chandrasekharan, M.B.
PDB entry 7uv9: KDM2A-nucleosome structure stabilized by H3K36C-UNC8015 covalent conjugate
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-04-29
Authors: Spangler, C.J., Skrajna, A., Foley, C.A., Budziszewski, G.R., Azzam, D.N., James, L.I., Frye, S.V., McGinty, R.K.
PDB entry 7uva: Crystal structure of KDM2A histone demethylase catalytic domain in complex with an H3C36 peptide modified by UNC8015
Classification: GENE REGULATION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-04-29
Authors: Budziszewski, G.R., Azzam, D.N., Spangler, C.J., Skrajna, A., Foley, C.A., James, L.I., Frye, S.V., McGinty, R.K.
PDB entry 7uvb: CRYSTAL STRUCTURE OF CARBONMONOXY HEMOGLOBIN S (LIGANDED SICKLE CELL HEMOGLOBIN) COMPLEXED WITH GBT021601
Classification: OXYGEN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-04-29
Authors: Partridge, J.R., Kaya, E., Xu, Q., Li, Z., Strutt, S.C., Cathers, B.E.
PDB entry 7uvc: Rad6(P43L)-Bre1 Complex
Classification: TRANSFERASE/LIGASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2022-04-29
Authors: Shukla, P.K., Chandrasekharan, M.B.
PDB entry 7uvd: Sco GlgEI-V279S in complex with cyclohexyl carbasugar
Classification: TRANSFERASE
Source organism: Streptomyces coelicolor A3(2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2022-04-30
Authors: Jayasinghe, T.D., Ronning, D.R.
PDB entry 7uve: Drosophila melanogaster setdb1-tuor domain with peptide H3K9me2K14ac
Classification: TRANSFERASE
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-05-01
Authors: Zhou, M., Dong, A., Liu, K., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
PDB entry 7uvf: Crystal structure of ZED8 Fab complex with CD8 alpha
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-05-01
Authors: Yu, C., Davies, C., Koerber, J.T., Williams, S.
PDB entry 7uvg: First cohesin of Sca5 from Ruminococcus bromii
Classification: PROTEIN BINDING
Source organism: Ruminococcus bromii L2-63
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2022-05-01
Authors: Cerqueira, F., Koropatkin, N.
PDB entry 7uvh: Pfs230 domain 1 bound by RUPA-32 Fab
Classification: CELL INVASION/IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-05-02
Authors: Ivanochko, D., Newton, J., Julien, J.P.
PDB entry 7uvi: Pfs230 domain 1 bound by RUPA-55 Fab
Classification: CELL INVASION/IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2022-05-02
Authors: Ivanochko, D., Newton, J., Julien, J.P.
PDB entry 7uvj: Rationally Designed ED1 Epitope-Scaffold Immunogen for SARS-CoV-2
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-05-02
Authors: Yennawar, N.H., Vishweshwaraiah, Y.L., Dokholyan, N.V.
PDB entry 7uvk: G. haemolysans IgA1 protease
Classification: IMMUNE SYSTEM
Source organism: Gemella haemolysans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2022-05-02
Authors: Eisenmesser, E.Z., Zheng, H.
PDB entry 7uvl: IgA1 Protease with IgA1 substrate
Classification: IMMUNE SYSTEM
Source organism: Gemella haemolysans; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2022-05-02
Authors: Eisenmesser, Z.E., Zheng, H.
PDB entry 7uvm: Crystal structure of human ClpP protease in complex with TR-27
Classification: HYDROLASE/AGONIST
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-05-02
Authors: Mabanglo, M.F., Houry, W.A.
PDB entry 7uvn: Crystal structure of human ClpP protease in complex with TR-57
Classification: HYDROLASE/AGONIST
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2022-05-02
Authors: Mabanglo, M.F., Houry, W.A.
PDB entry 7uvo: Pfs230 domain 1 bound by RUPA-38 Fab
Classification: CELL INVASION/IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-05-02
Authors: Ivanochko, D., Newton, J., Julien, J.P.
PDB entry 7uvp: Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2
Classification: TRANSLATION
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-05-02
Authors: Wang, C., Han, W., Groisman, E.A., Liu, J.
PDB entry 7uvq: Pfs230 domain 1 bound by RUPA-97 and 15C5 Fabs
Classification: CELL INVASION/IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2022-05-02
Authors: Ivanochko, D., Julien, J.P.