LiteFold/PDB huggingface dataset:
PDB entry 2dtt: Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from Pyrococcus horikoshii OT3 complexed with (1'R,2'S)-biopterin
Classification: LYASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-15
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dtu: Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog
Classification: TRANSFERASE/DNA
Source organism: Enterobacteria phage RB69; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2006-07-15
Authors: Aller, P., Hogg, M., Konigsberg, W., Wallace, S.S., Doublie, S.
PDB entry 2dtw: Crystal Structure of basic winged bean lectin in complex with 2Me-O-D-Galactose
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-07-18
Authors: Kulkarni, K.A., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2dtx: Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with D-mannose
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma acidophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-07-18
Authors: Yasutake, Y., Nishiya, Y., Tamura, N., Tamura, T.
PDB entry 2dty: Crystal structure of basic winged bean lectin complexed with N-acetyl-D-galactosamine
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2006-07-19
Authors: Kulkarni, K.A., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2dtz: Crystal Structure of multidrug binding protein QacR from Staphylococcus aureus cocrystallized with compound DB75
Classification: TRANSCRIPTION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-07-19
Authors: Brooks, B.E., Brennan, R.G.
PDB entry 2du0: Crystal structure of basic winged bean lectin in complex with Alpha-D-galactose
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-07-19
Authors: Kulkarni, K.A., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2du1: Crystal Structure of basic winged bean lectin in complex with Methyl-alpha-N-acetyl-D galactosamine
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-07-19
Authors: Kulkarni, K.A., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2du2: Crystal Structure Analysis of the L-Lactate Oxidase
Classification: OXIDOREDUCTASE
Source organism: Aerococcus viridans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-07-19
Authors: Morimoto, Y.
PDB entry 2du3: Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys and O-phosphoserine
Classification: LIGASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-07-20
Authors: Fukunaga, R.
PDB entry 2du4: Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys
Classification: LIGASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-07-20
Authors: Fukunaga, R.
PDB entry 2du5: Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ("opal complex")
Classification: LIGASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-07-20
Authors: Fukunaga, R.
PDB entry 2du6: Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAAmber and O-phosphoserine ("amber complex")
Classification: LIGASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2006-07-20
Authors: Fukunaga, R.
PDB entry 2du7: Crystal structure of Methanococcus jannacshii O-phosphoseryl-tRNA synthetase
Classification: LIGASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2006-07-20
Authors: Fukunaga, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2du8: Crystal structure of human D-amino acid oxidase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-07-20
Authors: Kawazoe, T., Tsuge, H., Fukui, K.
PDB entry 2du9: crystal structure of the transcriptional factor from C.glutamicum
Classification: TRANSCRIPTION
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2006-07-20
Authors: Gao, Y., Yao, M., Tanaka, I.
PDB entry 2dua: Crystal Structure of Phosphonopyruvate Hydrolase Complex with Oxalate and Mg++
Classification: HYDROLASE
Source organism: Variovorax sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-07-21
Authors: Herzberg, O., Chen, C.
PDB entry 2dub: ENOYL-COA HYDRATASE COMPLEXED WITH OCTANOYL-COA
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1997-04-28
Authors: Engel, C.K., Wierenga, R.K.
PDB entry 2duc: Crystal structure of SARS coronavirus main proteinase(3CLPRO)
Classification: HYDROLASE
Source organism: SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-07-21
Authors: Wang, H., Kim, Y.T., Muramatsu, T., Takemoto, C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dud: Crystal structure of human mitochondrial single-stranded DNA-binding protein(hmtSSB)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-07-21
Authors: Dong, X., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2due: crystal structure of a green fluorescent protein variant S65T/H148D at pH 10
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2006-07-23
Authors: Shu, X., Remington, S.J.
PDB entry 2duf: crystal structure of a green fluorescent protein variant S65T/H148D at pH 5.6
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-07-23
Authors: Shu, X., Remington, S.J.
PDB entry 2dug: crystal structure of a green fluorescent protein S65T/H148N at pH 5
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-07-23
Authors: Shu, X., Remington, S.J.
PDB entry 2duh: crystal structure of a green fluorescent protein variant S65T/H148N at pH 9.5
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2006-07-23
Authors: Shu, X., Remington, S.J.
PDB entry 2dui: crystal structure of a green fluorescent protein variant H148D at pH 9
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2006-07-23
Authors: Shu, X., Remington, S.J.
PDB entry 2duj: Crystal structure of the complex formed between proteinase K and a synthetic peptide Leu-Leu-Phe-Asn-Asp at 1.67 A resolution
Classification: HYDROLASE
Source organism: Engyodontium album; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2006-07-23
Authors: Singh, A.K., Singh, N., Somvanshi, R.K., Gupta, D., Sharma, S., Singh, T.P.
PDB entry 2duk: Crystal structure of MS0616
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2006-07-24
Authors: Hosaka, T., Nishino, A., Uchikubo, K.-T., Kishishita, S., Murayama, K., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dul: Crystal structure of tRNA G26 methyltransferase Trm1 in apo form from Pyrococcus horikoshii
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-07-24
Authors: Ihsanawati, Shirouzu, M., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dum: Crystal structure of hypothetical protein, PH0823
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2006-07-24
Authors: Hosaka, T., Kishishita, S., Murayama, K., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dun: Solution structure of BRCT domain of DNA polymerase mu
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-07-25
Authors: Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2duo: Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+-bound form
Classification: PROTEIN TRANSPORT
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-07-25
Authors: Satoh, T., Cowieson, N.P., Kato, R., Wakatsuki, S.
PDB entry 2dup: Crystal structure of VIP36 exoplasmic/lumenal domain, metal-free form
Classification: PROTEIN TRANSPORT
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-07-25
Authors: Satoh, T., Cowieson, N.P., Kato, R., Wakatsuki, S.
PDB entry 2duq: Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man-bound form
Classification: PROTEIN TRANSPORT
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-07-25
Authors: Satoh, T., Cowieson, N.P., Kato, R., Wakatsuki, S.
PDB entry 2dur: Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man2-bound form
Classification: PROTEIN TRANSPORT
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-07-25
Authors: Satoh, T., Cowieson, N.P., Kato, R., Wakatsuki, S.
PDB entry 2dut: Crystal structure of a M-loop deletion variant of MENT in the native conformation
Classification: HYDROLASE INHIBITOR
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-07-26
Authors: Whisstock, J.C., Buckle, A.M., McGowan, S., Irving, J.A.
PDB entry 2duu: Crystal Structure of apo-form of NADP-Dependent Glyceraldehyde-3-Phosphate Dehydrogenase from Synechococcus Sp.
Classification: OXIDOREDUCTASE
Source organism: Synechococcus elongatus PCC 7942
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-07-27
Authors: Kitatani, T., Nakamura, Y., Wada, K., Kinoshita, T., Tamoi, M., Shigeoka, S., Tada, T.
PDB entry 2duv: Structure of CDK2 with a 3-hydroxychromones
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-27
Authors: Kim, K.H., Lee, J., Park, T., Jeong, S., Hong, C.
PDB entry 2duw: Solution structure of putative CoA-binding protein of Klebsiella pneumoniae
Classification: LIGAND BINDING PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: SOLUTION NMR
Deposited: 2006-07-27
Authors: Hung, K.W., Lin, Y.C., Cheng, C.C., Chang, C.F., Tsai, S.F., Huang, T.H.
PDB entry 2dux: Crystal structure of human Aldose Reductase complexed with zopolrestat after 3 days soaking (3days_soaked_1)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-07-27
Authors: Steuber, H., Heine, A., Klebe, G.
PDB entry 2duy: Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2006-07-27
Authors: Niwa, H., Shimada, A., Chen, L., Liu, Z.-J., Wang, B.-C., Ebihara, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2duz: Human Aldose Reductase complexed with inhibitor zopolrestat after 3 days soaking (3days_soaked_2)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-07-27
Authors: Steuber, H., Heine, A., Klebe, G.
PDB entry 2dv0: Human Aldose Reductase complexed with zopolrestat after 6 days soaking(6days_soaked_2)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2006-07-28
Authors: Steuber, H., Heine, A., Klebe, G.
PDB entry 2dv3: Crystal structure of Leu65 to Arg mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-07-28
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dv4: Crystal structure of Leu65 to Gln mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-28
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dv5: Crystal structure of Leu65 to Ala mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-28
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dv6: Crystal structure of nitrite reductase from Hyphomicrobium denitrificans
Classification: OXIDOREDUCTASE
Source organism: Hyphomicrobium denitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-28
Authors: Nojiri, M., Xie, Y., Yamamoto, T., Inoue, T., Suzuki, S., Kai, Y.
PDB entry 2dv7: Crystal structure of Lys187 to Arg mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-07-28
Authors: Mizutani, H., Matsuura, Y., Saraboji, K., Malathy Sony, S.M., Ponnuswamy, M.N., Kumarevel, T.S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dv9: Crystal structure of peanut lectin GAL-BETA-1,3-GAL complex
Classification: SUGAR BINDING PROTEIN
Source organism: Arachis hypogaea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2006-07-30
Authors: Natchiar, S.K., Srinivas, O., Mitra, N., Surolia, A., Jayaraman, N., Vijayan, M.
PDB entry 2dva: Crystal structure of peanut lectin GAL-BETA-1,3-GALNAC-ALPHA-O-ME (Methyl-T-antigen) complex
Classification: SUGAR BINDING PROTEIN
Source organism: Arachis hypogaea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-30
Authors: Natchiar, S.K., Srinivas, O., Mitra, N., Surolia, A., Jayaraman, N., Vijayan, M.
PDB entry 2dvb: Crystal structure of peanut lectin GAl-beta-1,6-GalNAc complex
Classification: SUGAR BINDING PROTEIN
Source organism: Arachis hypogaea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-07-30
Authors: Natchiar, S.K., Srinivas, O., Mitra, N., Surolia, A., Jayaraman, N., Vijayan, M.
PDB entry 2dvc: Structure of the bovine lactoferrin C-lobe complex with sucrose at 3.0 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-07-31
Authors: Mir, R., Prem Kumar, R., Bhardwaj, R., Ethayathulla, A.S., Sinha, M., Singh, N., Bhushan, A., Sharma, S., Kaur, P., Singh, T.P.
PDB entry 2dvd: Crystal structure of peanut lectin GAL-ALPHA-1,3-GAL complex
Classification: SUGAR BINDING PROTEIN
Source organism: Arachis hypogaea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-07-31
Authors: Natchiar, S.K., Srinivas, O., Mitra, N., Surolia, A., Jayaraman, N., Vijayan, M.
PDB entry 2dve: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Mutation Arg51Ala
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-07-31
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvf: Crystals of peanut lectin grown in the presence of GAL-ALPHA-1,3-GAL-BETA-1,4-GAL
Classification: SUGAR BINDING PROTEIN
Source organism: Arachis hypogaea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2006-07-31
Authors: Natchiar, S.K., Srinivas, O., Mitra, N., Surolia, A., Jayaraman, N., Vijayan, M.
PDB entry 2dvg: Crystal structure of peanut lectin GAL-ALPHA-1,6-GLC complex
Classification: SUGAR BINDING PROTEIN
Source organism: Arachis hypogaea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2006-07-31
Authors: Natchiar, S.K., Srinivas, O., Mitra, N., Surolia, A., Jayaraman, N., Vijayan, M.
PDB entry 2dvh: THE Y64A MUTANT OF CYTOCHROME C553 FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH, NMR, 39 STRUCTURES
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Experimental method: SOLUTION NMR
Deposited: 1998-03-25
Authors: Sebban-Kreuzer, C., Blackledge, M.J., Dolla, A., Marion, D., Guerlesquin, F.
PDB entry 2dvi: Complex structure of CCA-adding enzyme, mini-DCC and CTP
Classification: TRANSFERASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2006-07-31
Authors: Tomita, K., Ishitani, R., Fukai, S., Nureki, O.
PDB entry 2dvj: phosphorylated Crk-II
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-07-31
Authors: Kobashigawa, Y., Inagaki, F.
PDB entry 2dvk: Crystal Structure of Hypothetical protein from Aeropyrum pernix
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-07-31
Authors: Lokanath, N.K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvl: Crystal structure of project TT0160 from Thermus thermophilus HB8
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-07-31
Authors: Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvm: NAD complex structure of PH1275 protein from Pyrococcus horikoshii
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-07-31
Authors: Lokanath, N.K., Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvn: Structure of PH1917 protein with the complex of IMP from Pyrococcus horikoshii
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-07-31
Authors: Lokanath, N.K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvo: Structure of PH1917 protein with the complex of ITP from Pyrococcus horikoshii
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2006-07-31
Authors: Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvp: Structure of NTPase from Pyroccous horikoshii
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-07-31
Authors: Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvq: Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2006-08-01
Authors: Nakamura, Y., Umehara, T., Shirouzu, M., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvr: Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-08-01
Authors: Nakamura, Y., Umehara, T., Shirouzu, M., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvs: Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2006-08-01
Authors: Nakamura, Y., Umehara, T., Shirouzu, M., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvt: Crystal Structure of 2,6-Dihydroxybenzoate Decarboxylase from Rhizobium
Classification: LYASE
Source organism: Rhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-08-01
Authors: Goto, M.
PDB entry 2dvu: Crystal Structure of 2,6-Dihydroxybenzoate Decarboxylase Complexed with 2,6-Dihydroxybenzoate
Classification: LYASE
Source organism: Rhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-08-01
Authors: Goto, M.
PDB entry 2dvv: Crystal structure of the second bromodomain of the human Brd2 protein
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-08-01
Authors: Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvw: Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Classification: CELL CYCLE/PROTEIN-BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-08-01
Authors: Yokoyama, S., Padmanabhan, B., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dvx: Crystal Structure of 2,6-Dihydroxybenzoate Decarboxylase Complexed with inhibitor 2,3-dihydroxybenzaldehyde
Classification: LYASE
Source organism: Rhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-08-01
Authors: Goto, M.
PDB entry 2dvy: Crystal structure of restriction endonucleases PabI
Classification: HYDROLASE
Source organism: Pyrococcus abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-08-01
Authors: Miyazono, K., Watanabe, M., Kamo, M., Sawasaki, T., Nagata, K., Endo, Y., Tanokura, M., Kobayashi, I.
PDB entry 2dvz: Structure of a periplasmic transporter
Classification: TRANSPORT PROTEIN
Source organism: Bordetella pertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-08-01
Authors: Huvent, I., Belrhali, H., Antoine, R., Bompard, C., Locht, C., Jacob-Dubuisson, F., Villeret, V.
PDB entry 2dw0: Crystal structure of VAP2 from Crotalus atrox venom (Form 2-1 crystal)
Classification: APOPTOSIS, TOXIN
Source organism: Crotalus atrox
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2006-08-02
Authors: Takeda, S., Igarashi, T., Araki, S.
PDB entry 2dw1: Crystal structure of VAP2 from Crotalus atrox venom (Form 2-2 crystal)
Classification: APOPTOSIS, TOXIN
Source organism: Crotalus atrox
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-08-02
Authors: Takeda, S., Igarashi, T., Araki, S.
PDB entry 2dw2: Crystal structure of VAP2 from Crotalus atrox venom (Form 2-5 crystal)
Classification: APOPTOSIS, TOXIN
Source organism: Crotalus atrox
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-08-02
Authors: Takeda, S., Igarashi, T., Araki, S.
PDB entry 2dw3: Solution structure of the Rhodobacter sphaeroides PufX membrane protein
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter sphaeroides
Experimental method: SOLUTION NMR
Deposited: 2006-08-02
Authors: Wang, Z.Y.
PDB entry 2dw4: Crystal structure of human LSD1 at 2.3 A resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-08-02
Authors: Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dw5: Crystal structure of human peptidylarginine deiminase 4 in complex with N-alpha-benzoyl-N5-(2-fluoro-1-iminoethyl)-L-ornithine amide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-08-04
Authors: Luo, Y., Arita, K., Sato, M., Thompson, P.R.
PDB entry 2dw6: Crystal structure of the mutant K184A of D-Tartrate Dehydratase from Bradyrhizobium japonicum complexed with Mg++ and D-tartrate
Classification: LYASE
Source organism: Bradyrhizobium japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-08-07
Authors: Fedorov, A.A., Fedorov, E.V., Yew, W.S., Wood, B.M., Gerlt, J.A., Almo, S.C.
PDB entry 2dw7: Crystal structure of D-tartrate dehydratase from Bradyrhizobium japonicum complexed with Mg++ and meso-tartrate
Classification: LYASE
Source organism: Bradyrhizobium japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-08-07
Authors: Fedorov, A.A., Fedorov, E.V., Yew, W.S., Wood, B.M., Gerlt, J.A., Almo, S.C.
PDB entry 2dwa: Structure of the complex of lactoferrin C-terminal half with fucose at 2.07 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2006-08-09
Authors: Mir, R., Prem Kumar, R., Singh, N., Sinha, M., Sharma, S., Kaur, P., Bhushan, A., Singh, T.P.
PDB entry 2dwb: Aurora-A kinase complexed with AMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-08-10
Authors: Kukimoto-Niino, M., Murayama, K., Shirouzu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dwc: Crystal structure of Probable phosphoribosylglycinamide formyl transferase from Pyrococcus horikoshii OT3 complexed with ADP
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-08-10
Authors: Yoshikawa, S., Arai, R., Kamo-Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dwd: crystal structure of KcsA-FAB-TBA complex in Tl+
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Streptomyces lividans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-08-10
Authors: Yohannan, S., Zhou, Y.
PDB entry 2dwe: Crystal structure of KcsA-FAB-TBA complex in Rb+
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Streptomyces lividans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-08-10
Authors: Yohannan, S., Zhou, Y.
PDB entry 2dwf: NMR structure of Mini-B, an N-terminal- C-terminal construct from human Surfactant Protein B (SP-B), in Sodium dodecyl sulfate (SDS) micelles
Classification: SURFACE ACTIVE PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-08-11
Authors: Booth, V., Sarker, M., Waring, A.J., Keough, K.M.W.
PDB entry 2dwg: RUN domain of Rap2 interacting protein x, crystallized in P2(1)2(1)2(1) space group
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2006-08-11
Authors: Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dwh: Crystal structure of N-acetylglucosamine complex of bovine lactoferrin C-lobe at 2.8 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-08-12
Authors: Mir, R., Ethayathulla, A.S., Singh, N., Sharma, S., Bhushan, A., Kaur, P., Singh, T.P.
PDB entry 2dwi: Crystal structure of the complex formed between C-terminal half of bovine lactoferrin and cellobiose at 2.2 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-08-13
Authors: Prem Kumar, R., Mir, R., Sinha, M., Singh, N., Sharma, S., Kaur, P., Bhushan, A., Singh, T.P.
PDB entry 2dwj: Structure of the complex of C-terminal lobe of bovine lactoferrin with raffinose at 2.3 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-08-15
Authors: Mir, R., Singh, N., Sinha, M., Sharma, S., Bhushan, A., Singh, T.P.
PDB entry 2dwk: Crystal structure of the RUN domain of mouse Rap2 interacting protein x
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-08-15
Authors: Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dwl: Crystal structure of the PriA protein complexed with oligonucleotides
Classification: HYDROLASE/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-08-15
Authors: Sasaki, K., Ose, T., Tanaka, T., Masai, H., Maenaka, K., Kohda, D.
PDB entry 2dwm: Crystal structure of the PriA protein complexed with oligonucleotides
Classification: HYDROLASE/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2006-08-15
Authors: Sasaki, K., Ose, T., Tanaka, T., Masai, H., Maenaka, K., Kohda, D.
PDB entry 2dwn: Crystal structure of the PriA protein complexed with oligonucleotides
Classification: HYDROLASE/DNA
Source organism: Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2006-08-15
Authors: Sasaki, K., Ose, T., Tanaka, T., Masai, H., Maenaka, K., Kohda, D.
PDB entry 2dwo: PFKFB3 in complex with ADP and PEP
Classification: TRANSFERASE, HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-08-16
Authors: Lee, Y.H.
PDB entry 2dwp: A pseudo substrate complex of 6-phosphofructo-2-kinase of PFKFB
Classification: TRANSFERASE, HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-08-16
Authors: Lee, Y.H.
PDB entry 2dwq: Thermus thermophilus YchF GTP-binding protein
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2006-08-16
Authors: Kukimoto-Niino, M., Murayama, K., Shorouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dwr: Crystal structure of the human Wa rotavirus VP8* carbohydrate-recognising domain
Classification: VIRAL PROTEIN
Source organism: Human rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-08-16
Authors: Blanchard, H.
PDB entry 2dws: Cu-containing nitrite reductase at pH 8.4 with bound nitrite
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2006-08-16
Authors: Jacobson, F.
PDB entry 2dwt: Cu-containing nitrite reductase at pH 6.0 with bound nitrite
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-08-17
Authors: Jacobson, F.
PDB entry 2dwu: Crystal Structure of Glutamate Racemase Isoform RacE1 from Bacillus anthracis
Classification: ISOMERASE
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-08-17
Authors: Mehboob, S., Santarsiero, B.D., Johnson, M.E.
PDB entry 2dwv: Solution structure of the second WW domain from mouse salvador homolog 1 protein (mWW45)
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2006-08-17
Authors: Ohnishi, S., Kigawa, T., Koshiba, S., Tomizawa, T., Sato, M., Tochio, N., Inoue, M., Harada, T., Watanabe, S., Guntert, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dww: Crystal structure of Bromodomain-containing protein 4
Classification: TRANSCRIPTION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-08-21
Authors: Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dwx: Co-crystal Structure Analysis of GGA1-GAE with the WNSF motif
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2006-08-21
Authors: Inoue, M., Shiba, T., Yamada, Y., Ihara, K., Kawasaki, M., Kato, R., Nakayama, K., Wakatsuki, S.
PDB entry 2dwy: Crystal Structure Analysis of GGA1-GAE
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-08-21
Authors: Inoue, M., Shiba, T., Yamada, Y., Ihara, K., Kawasaki, M., Kato, R., Nakayama, K., Wakatsuki, S.
PDB entry 2dwz: Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Classification: ONCOPROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-08-22
Authors: Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dx0: Crystal structure of the N-terminal SH2 domain of mouse phospholipase C-gamma 2
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-08-22
Authors: Handa, N., Takagi, T., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dx1: Crystal structure of RhoGEF protein Asef
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2006-08-22
Authors: Murayama, K., Kato-Murayama, M., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dx2: NMR structure of TP (Target Peptide): monomeric 3_10 helix
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-08-23
Authors: Tamura, A., Araki, M.
PDB entry 2dx3: NMR structure of DP5_conformation1: monomeric alpha-helix
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-08-23
Authors: Tamura, A., Araki, M.
PDB entry 2dx4: NMR structure of DP5_conformation2: monomeric beta-hairpin
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-08-23
Authors: Tamura, A., Araki, M.
PDB entry 2dx5: The complex structure between the mouse EAP45-GLUE domain and ubiquitin
Classification: PROTEIN TRANSPORT/SIGNALING PROTEIN
Source organism: Bos taurus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2006-08-24
Authors: Hirano, S., Suzuki, N., Slagsvold, T., Kawasaki, M., Trambaiolo, D., Kato, R., Stenmark, H., Wakatsuki, S.
PDB entry 2dx6: Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2006-08-24
Authors: Kishishita, S., Murayama, K., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dx7: Crystal structure of Pyrococcus horikoshii OT3 aspartate racemase complex with citric acid
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-08-24
Authors: Ohtaki, A., Arakawa, T., Iizuka, R., Odaka, M., Yohda, M.
PDB entry 2dx8: Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-08-24
Authors: Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxa: Crystal structure of trans editing enzyme ProX from E.coli
Classification: TRANSLATION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2006-08-25
Authors: Kato-Murayama, M., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxb: Recombinant thiocyanate hydrolase comprising partially-modified cobalt centers
Classification: HYDROLASE
Source organism: Thiobacillus thioparus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-08-25
Authors: Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.
PDB entry 2dxc: Recombinant thiocyanate hydrolase, fully-matured form
Classification: HYDROLASE
Source organism: Thiobacillus thioparus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-08-25
Authors: Arakawa, T., Kawano, Y., Katayama, Y., Yohda, M., Odaka, M.
PDB entry 2dxd: Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2006-08-25
Authors: Kato-Murayama, M., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxe: Crystal structure of nucleoside diphosphate kinase in complex with GDP
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-08-25
Authors: Kato-Murayama, M., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxf: Crystal structure of nucleoside diphosphate kinase in complex with GTP analog
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-08-25
Authors: Kato-Murayama, M., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxi: 2.2 A crystal structure of glutamyl-tRNA synthetase from Thermus thermophilus complexed with tRNA(Glu), ATP, and L-glutamol
Classification: ligase/RNA
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-08-28
Authors: Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxl: Glycerophosphodiesterase from Enterobacter aerogenes
Classification: HYDROLASE
Source organism: Enterobacter aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-08-28
Authors: Jackson, C.J., Carr, P.D., Ollis, D.L.
PDB entry 2dxm: Neutron Structure Analysis of Deoxy Human Hemoglobin
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Homo sapiens
Experimental method: NEUTRON DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-08-28
Authors: Morimoto, Y.
PDB entry 2dxn: Glycerophosphodiesterase from Enterobacter aerogenes
Classification: HYDROLASE
Source organism: Enterobacter aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2006-08-28
Authors: Jackson, C.J., Carr, P.D., Ollis, D.L.
PDB entry 2dxp: Crystal structure of the complex of the archaeal sulfolobus PTP-fold phosphatase with phosphopeptides A-(p)Y-R
Classification: HYDROLASE
Source organism: Sulfolobus solfataricus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-08-29
Authors: Chu, H.M., Wang, A.H.J.
PDB entry 2dxq: Putative acetyltransferase from Agrobacterium tumefaciens str. C58
Classification: TRANSFERASE
Source organism: Agrobacterium tumefaciens str.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-08-30
Authors: Binkowski, T.A., Xu, X., Edwards, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 2dxr: Crystal structure of the complex formed between C-terminal half of bovine lactoferrin and sorbitol at 2.85 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2006-08-30
Authors: Mir, R., Prem kumar, R., Sinha, M., Singh, N., Sharma, S., Bhushan, A., Kaur, P., Singh, T.P.
PDB entry 2dxs: Crystal structure of HCV NS5B RNA polymerase complexed with a tetracyclic inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Hepatitis C virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-08-30
Authors: Adachi, T., Tsuruha, J., Doi, S., Murase, K., Ikegashira, K., Watanabe, S., Uehara, K., Orita, T., Nomura, A., Kamada, M.
PDB entry 2dxt: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with ATP and Biotin, Mutation D104A
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-08-30
Authors: Bagautdinov, B., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxu: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with Biotinyl-5'-AMP, Mutation R48A
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2006-08-30
Authors: Bagautdinov, B., Taketa, M., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxv: Crystal structure of Glu54 to His mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-08-31
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxw: Crystal structure of Glu54 to Lys mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-08-31
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxx: Crystal structure of Asn142 to Glu mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2006-08-31
Authors: Mizutani, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dxy: Structure of the complex of C-terminal lobe of bovine lactoferrin with trehalose at 2.0 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2006-09-03
Authors: Mir, R., Singh, N., Sinha, M., Sharma, S., Bhushan, A., Singh, T.P.
PDB entry 2dy0: Crystal structure of project JW0458 from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2006-09-04
Authors: Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dy1: Crystal structure of EF-G-2 from Thermus thermophilus
Classification: SIGNALING PROTEIN, TRANSLATION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-09-04
Authors: Wang, H., Takemoto, C., Murayama, K., Terada, T., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dy2: Nitrite reductase pH 6.0
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2006-09-05
Authors: Jacobson, F.
PDB entry 2dy3: Crystal Structure of alanine racemase from Corynebacterium glutamicum
Classification: ISOMERASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-09-05
Authors: Miyaguchi, I., Sasaki, C., Kato, R., Oikawa, T., Sugio, S.
PDB entry 2dy4: Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol
Classification: TRANSFERASE/DNA
Source organism: Enterobacteria phage RB69; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2006-09-06
Authors: Aller, P., Rould, M.A., Hogg, M., Wallace, S.S., Doublie, S.
PDB entry 2dy5: Crystal structure of rat heme oxygenase-1 in complex with heme and 2-[2-(4-chlorophenyl)ethyl]-2-[(1H-imidazol-1-yl)methyl]-1,3-dioxolane
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-09-06
Authors: Sugishima, M., Takahashi, H., Fukuyama, K.
PDB entry 2dy7: Solution structure of the first chromodomain of yeast Chd1
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: SOLUTION NMR
Deposited: 2006-09-07
Authors: Okuda, M., Nishimura, Y.
PDB entry 2dy8: Solution structure of the second chromodomain of yeast Chd1
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: SOLUTION NMR
Deposited: 2006-09-07
Authors: Okuda, M., Nishimura, Y.
PDB entry 2dy9: Crystal structure of nucleoside diphosphate kinase in complex with ADP
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2006-09-08
Authors: Kato-Murayama, M., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dya: Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2006-09-08
Authors: Kato-Murayama, M., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dyb: The crystal structure of human p40(phox)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2006-09-08
Authors: Honbou, K.
PDB entry 2dyc: Crystal structure of the N-terminal domain of mouse galectin-4
Classification: SUGAR BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-09-08
Authors: Kato-Murayama, M., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dyd: Solution structure of the PABC domain from Triticum aevestium poly(A)-binding protein
Classification: RNA BINDING PROTEIN
Source organism: Triticum aestivum
Experimental method: SOLUTION NMR
Deposited: 2006-09-10
Authors: Siddiqui, N.
PDB entry 2dyf: Solution structure of the first WW domain of FBP11 / HYPA (FBP11 WW1) complexed with a PL (PPLP) motif peptide ligand
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: SOLUTION NMR
Deposited: 2006-09-11
Authors: Kato, Y., Miyakawa, T., Kurita, J., Tanokura, M.
PDB entry 2dyh: Crystal structure of the Keap1 protein in complexed with the N-terminal region of the Nrf2 transcription factor
Classification: TRANSCRIPTION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-09-14
Authors: Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)