LiteFold/PDB huggingface dataset:
PDB entry 9ded: Designed protein n8
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-08-28
Authors: Pellock, S.J., Lauko, A., Bera, A.
PDB entry 9dee: The designed serine hydrolase known as super
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2024-08-28
Authors: Pellock, S.J., Lauko, A., Bera, A.K.
PDB entry 9def: The designed serine hydrolase known as win
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-08-28
Authors: Pellock, S.J., Lauko, A., Bera, A.K.
PDB entry 9deg: The designed serine hydrolase known as win1
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-08-28
Authors: Lauko, A., Pellock, S.J., Bera, A.K.
PDB entry 9deh: The designed serine hydrolase known as win31
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-08-28
Authors: Pellock, S.J., Lauko, A., Bera, A.K.
PDB entry 9dei: Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1)
Classification: RNA BINDING PROTEIN
Source organism: Trypanosoma brucei
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-08-29
Authors: Liu, Y.T., Jih, J., Zhou, Z.H., Aphasizhev, R.
PDB entry 9dek: USP7 in complex with macrocycle inhibitor MC02
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-29
Authors: Rouge, L., Ultsch, M., Holden, J.K., Dueber, E.C., Harris, S.F.
PDB entry 9del: USP7 in complex with macrocycle MC03
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-29
Authors: Ultsch, M., Tenorio, C.A., Dueber, E.C., Harris, S.F.
PDB entry 9dem: USP7 in complex with macrocycle MC04
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-08-29
Authors: Rouge, L., Ultsch, M., Dueber, E.C., Harris, S.F.
PDB entry 9den: USP7 in complex with macrocycle MC07
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2024-08-29
Authors: Ultsch, M., Tenorio, C.A., Dueber, E.C., Harris, S.F.
PDB entry 9deo: USP7 in complex with macrocycle inhibitor MC08
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-08-29
Authors: Ultsch, M., Tenorio, C.A., Dueber, E.C., Harris, S.F.
PDB entry 9dep: USP7 in complex with macrocycle MC09
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2024-08-29
Authors: Ultsch, M., Tenorio, C.A., Dueber, E.C., Harris, S.F.
PDB entry 9deq: Cryo-EM structures of full-length integrin alphaIIbbeta3 in native lipids complexed with modified tirofiban
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-08-29
Authors: Adair, B., Xiong, J.P., Yeager, M., Arnaout, M.A.
PDB entry 9der: Cryo-EM Structures of Full-Length Integrin alphaIIbbeta3 in Native Lipids Complexed with Tirofiban
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-08-29
Authors: Adair, B., Xiong, J.P., Yeager, M., Arnaout, M.A.
PDB entry 9des: Mycobacterium tuberculosis UvrD1: DNA-bound dimer.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2024-08-29
Authors: Chadda, A., Galburt, E.A.
PDB entry 9det: Human V-ATPase Vo subcomplex (containing subunit isoform a4) bound to nanobody and inhibitor
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-29
Authors: Oot, R.A., Park, J.B., Roh, S.-H., Wilkens, S.
PDB entry 9deu: Crystal structure of epoxyqueuosine reductase QueH in complex with queuosine
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-08-29
Authors: Hu, Y., Bruner, S.D.
PDB entry 9dev: PARP4 BRCT domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-08-29
Authors: Frigon, L., Pascal, J.M.
PDB entry 9dew: Crystal structure of NDM-1 complexed with compound 2
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-08-29
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9dex: Crystal structure of human peroxiredoxin 1 in complex with inhibitor WF-097
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-08-29
Authors: Lowther, W.T., Gumpena, R.
PDB entry 9dey: Human norovirus GII.4 Sydney protease
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-08-29
Authors: Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9dez: PDCoV S trimer bound by three copies of PD41 Fab
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Porcine deltacoronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-08-29
Authors: Asarnow, D., Rexhepaj, M., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9df0: PDCoV S RBD bound to PD41 Fab (local refinement)
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Porcine deltacoronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-29
Authors: Asarnow, D., Rexhepaj, M., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9df1: Q108K:K40L:T51V:T53C:R58Y:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V and irradiated with UV light at pH 7.6
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.524 Å
Deposited: 2024-08-29
Authors: Bingham, C., Geiger, J.H.
PDB entry 9df2: EGFR Exon20 insertion mutant ASV bound with (S)-3-((3-chloro-2-methoxyphenyl)amino)-2-(3-((tetrahydrofuran-2-yl)methoxy)pyridin-4-yl)-1,5,6,7-tetrahydro-4H-pyrrolo[3,2-c]pyridin-4-one
Classification: ONCOPROTEIN,TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-29
Authors: Hilbert, B.J.
PDB entry 9df3: EGFR Exon20 insertion mutant SVD bound with (S)-3-((3-chloro-2-methoxyphenyl)amino)-2-(3-((tetrahydrofuran-2-yl)methoxy)pyridin-4-yl)-1,5,6,7-tetrahydro-4H-pyrrolo[3,2-c]pyridin-4-one
Classification: ONCOPROTEIN,TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-08-29
Authors: Hilbert, B.J., Brooijmans, N., Pagliarini, R.A., Milgram, B.C.
PDB entry 9df4: EGFR Exon20 insertion mutant SVD bound with STX-721
Classification: ONCOPROTEIN,TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-08-29
Authors: Hilbert, B.J., Brooijmans, N., Pagliarini, R.A., Milgram, B.C.
PDB entry 9df5: Human norovirus GII.3 protease
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-08-29
Authors: Pham, S.H., Neetu, N., Sankaran, B., Prasad, B.V.V.
PDB entry 9df8: Q108K:K40L:T51V:T53C:R58A:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V and irradiated with UV light at pH 3.0
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-08-29
Authors: Bingham, C., Geiger, J.H.
PDB entry 9df9: Thermococcus gammatolerans DNA Ligase
Classification: DNA BINDING PROTEIN
Source organism: Thermococcus gammatolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-08-29
Authors: Quintana-Armas, A.X., Rudino-Pinera, E., Cardona-Felix, C., Flores-Hernandez, E.
PDB entry 9dfa: Thermococcus gammatolerans DNA Ligase
Classification: DNA BINDING PROTEIN,LIGASE
Source organism: Thermococcus gammatolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-08-29
Authors: Rudino-Pinera, E., Quintana-Armas, A.X., Cardona-Felix, C., Flores-Hernandez, E.
PDB entry 9dfb: Q108K:K40L:T51V:T53C:R58A:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V in the dark at pH 3.0
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.705 Å
Deposited: 2024-08-29
Authors: Bingham, C., Geiger, J.H.
PDB entry 9dfc: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Paenibacillus; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-29
Authors: Aleksandrova, E.V., Travin, D.Y., Jangra, M., Kaur, M., Darwish, L., Koteva, K., Klepacki, D., Wang, W., Tiffany, M., Sokaribo, A., Coombes, B.K., Vazquez-Laslop, N., Wright, G.D., Mankin, A.S., Polikanov, Y.S.
PDB entry 9dfd: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Paenibacillus; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-29
Authors: Aleksandrova, E.V., Travin, D.Y., Jangra, M., Kaur, M., Darwish, L., Koteva, K., Klepacki, D., Wang, W., Tiffany, M., Sokaribo, A., Coombes, B.K., Vazquez-Laslop, N., Wright, G.D., Mankin, A.S., Polikanov, Y.S.
PDB entry 9dfe: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
Classification: RIBOSOME
Source organism: Escherichia coli K-12; Paenibacillus; Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-29
Authors: Aleksandrova, E.V., Travin, D.Y., Jangra, M., Kaur, M., Darwish, L., Koteva, K., Klepacki, D., Wang, W., Tiffany, M., Sokaribo, A., Coombes, B.K., Vazquez-Laslop, N., Wright, G.D., Mankin, A.S., Polikanov, Y.S.
PDB entry 9dff: G1 domain of human aggrecan bound to hyaluronan
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-08-29
Authors: Bouyain, S.
PDB entry 9dfg: Crystal structure of PrnB in complex with 7-Cl-Trp
Classification: OXIDOREDUCTASE
Source organism: Flavobacteriales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-08-30
Authors: Li, B., Wang, Y.
PDB entry 9dfi: Crystal structure of PrnB in complex with Tryptophan
Classification: OXIDOREDUCTASE
Source organism: Flavobacteriales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-08-30
Authors: Li, B., Wang, Y.
PDB entry 9dfl: Crystal structure of PrnB in complex with 3-indolepropionic acid
Classification: OXIDOREDUCTASE
Source organism: Flavobacteriales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2024-08-30
Authors: Li, B., Wang, Y.
PDB entry 9dfm: Crystal structure of PrnB in complex with tryptamine
Classification: OXIDOREDUCTASE
Source organism: Flavobacteriales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-08-30
Authors: Li, B., Wang, Y.
PDB entry 9dfn: X-ray crystal structure of the second viperin-like enzyme from Trichoderma virens with bound CTP and SAM
Classification: ANTIVIRAL PROTEIN
Source organism: Trichoderma virens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-30
Authors: Lachowicz, J.C., Grove, T.G., Bonanno, J.B.
PDB entry 9dfo: PARP4 BRCT domain K31Q mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-08-30
Authors: Frigon, L., Pascal, J.M.
PDB entry 9dfp: PARP4 BRCT domain K23/24Q mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-08-30
Authors: Frigon, L., Pascal, J.M.
PDB entry 9dfq: PARP4 BRCT domain F39Q mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-08-30
Authors: Frigon, L., Pascal, J.M.
PDB entry 9dfr: PARP4 BRCT domain F39A mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-08-30
Authors: Frigon, L., Pascal, J.M.
PDB entry 9dfs: Structure of novel Myo7a-N isoform (ADP-bound) expressed in sensory hair cells (head domain + first two IQ domains), bound to F-actin
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-30
Authors: Egelman, E.H., Shin, J.B.
PDB entry 9dft: G1 domain of human aggrecan
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2024-08-30
Authors: Bouyains, S.
PDB entry 9dfu: X-ray crystal structure of the second Viperin-like enzyme from T. virens variant F40H with bound CTP and SAM
Classification: ANTIVIRAL PROTEIN
Source organism: Trichoderma virens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-08-30
Authors: Lachowicz, J.C., Bonanno, J.B., Grove, T.L.
PDB entry 9dfv: Structure of canonical Myo7a-C isoform (ADP-bound) expressed in sensory hair cells (head domain + first two IQ domains), bound to F-actin
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-30
Authors: Egelman, E.H., Shin, J.B.
PDB entry 9dfw: X-ray crystal structure of an engineered Viperin-like enzyme from T. virens with bound CTP and SAM
Classification: ANTIVIRAL PROTEIN
Source organism: Trichoderma virens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.677 Å
Deposited: 2024-08-30
Authors: Lachowicz, J.C., Bonanno, J.B., Grove, T.L.
PDB entry 9dfx: Cryo-EM structure of a SUR1/Kir6.2 ATP-sensitive potassium channel in the presence of Aekatperone in the closed conformation
Classification: TRANSPORT PROTEIN
Source organism: Mesocricetus auratus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-08-30
Authors: Driggers, C.M., ElSheikh, A., Shyng, S.-L.
PDB entry 9dfy: T-junction triangle 6-6
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.24 Å
Deposited: 2024-08-30
Authors: Koomullam, N., Mao, C.
PDB entry 9dfz: T-junction triangle 6-11
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.35 Å
Deposited: 2024-08-31
Authors: Koomullam, N., Mao, C.
PDB entry 9dg0: T-junction triangle 7-6
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.53 Å
Deposited: 2024-09-01
Authors: Koomullam, N., Mao, C.
PDB entry 9dg1: Structure of Plasmodium falciparum apicoplast DNA polymerase in complex with DNA (exo-minus)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Plasmodium falciparum 3D7; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2024-09-01
Authors: Lo, C.-Y., Gao, Y.
PDB entry 9dg2: PmHMGR bound to mevalonate, CoA, and NAD, buffer-exchanged to ammonium acetate environment at pH 6.7
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp. 'mevalonii'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-09-01
Authors: Purohit, V., Steussy, C.N., Schmidt, T., Stauffacher, C.V., Rushton, P.
PDB entry 9dg3: ncPRC1RYBP Delta-linker mutant bound to singly modified H2AK119Ub nucleosome
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-09-01
Authors: Godinez-Lopez, V., Valencia-Sanchez, M.I., Armache, J.P., Armache, K.-J.
PDB entry 9dg5: Thermotoga maritima threonylcarbamoyl adenylate synthase (TsaC2) in complex with L-threonine, magnesium and ATP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-09-02
Authors: Kutshuashvili, A., Swairjo, M.A.
PDB entry 9dg6: Tetrahydroprotoberberine N-methyltransferase complex with N-methylcanadine and SAH
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dg7: Tetrahydroprotoberberine N-methyltransferase E204A mutant in complex with R-reticuline and SAM
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dg8: Tetrahydroprotoberberine N-methyltransferase E204A mutant in complex with (S)-reticuline and SAM
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dg9: Tetrahydroprotoberberine N-methyltransferase E207A mutant in complex with R-reticuline and SAM
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dga: Tetrahydroprotoberberine N-methyltransferase in complex with (R)-reticuline and SAM
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dgb: Tetrahydroprotoberberine N-methyltransferase in complex with (S)-reticuline and SAM
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dgc: Tetrahydroprotoberberine N-methyltransferase E207A mutant in complex with (S)-reticuline and SAM
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dgd: Tetrahydroprotoberberine N-methyltransferase in complex with boldine and SAH
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dge: Tetrahydroprotoberberine N-methyltransferase product complex with dextromethorphan and SAM
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dgf: Tetrahydroprotoberberine N-methyltransferase product complex with N-methyltetrahydropalmatine and SAH
Classification: TRANSFERASE
Source organism: Glaucium flavum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-09-02
Authors: Lang, D.E., Ng, K.K.S.
PDB entry 9dgg: ncPRC1RYBP bound to unmodified nucleosome
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-09-02
Authors: Godinez-Lopez, V., Valencia-Sanchez, M.I., Armache, J.P., Armache, K.-J.
PDB entry 9dgh: Focused region on azoRhuA-bCDRhuA co-assembled nanotubes
Classification: LYASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-09-02
Authors: Zhang, Z., Sonani, R.R., Wang, F., Egelman, E.H., Tezcan, F.A.
PDB entry 9dgi: Cannabinoid receptor 1-Gi complex with novel ligand
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-09-02
Authors: Tummino, T.A., Iliopoulos-Tsoutsouvas, C., Braz, J.M., O'Brien, E.S., Krishna Kumar, K., Makriyannis, M., Basbaum, A.I., Shoichet, B.K.
PDB entry 9dgk: The Retinoblastoma Protein with Mutation M704V
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2024-09-02
Authors: Ruiz-Rivera, A., Castro, A., Burke, J.R.
PDB entry 9dgl: T-junction triangle 8-6
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.11 Å
Deposited: 2024-09-02
Authors: Koomullam, N., Mao, C.
PDB entry 9dgm: T-junction triangle 8-11
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.63 Å
Deposited: 2024-09-02
Authors: Koomullam, N., Mao, C.
PDB entry 9dgn: T-junction triangle 7-11
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.32 Å
Deposited: 2024-09-02
Authors: Koomullam, N., Mao, C.
PDB entry 9dgo: Designed miniproteins potently inhibit and protect against MERS-CoV. Crystal structure of MERS-CoV S RBD in complex with miniprotein cb3
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-09-03
Authors: Tortorici, M.A., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dgp: Motor domain of dynein-1 complex on microtubules
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-09-03
Authors: Rao, Q., Chai, P., Zhang, K.
PDB entry 9dgq: Structure of dynein-1 on microtubules
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 11 Å
Deposited: 2024-09-03
Authors: Rao, Q., Chai, P., Zhang, K.
PDB entry 9dgr: Composite structure of dynein-dynactin on microtubules
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2024-09-03
Authors: Rao, Q., Chai, P., Zhang, K.
PDB entry 9dgs: Dynactin and dynein tail region of dynein-dynactin complex on microtubules
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-09-03
Authors: Rao, Q., Chai, P., Zhang, K.
PDB entry 9dgt: structure of dynactin, dynein tail with one BICDR from dynein-dynactin-BICDR on microtubules
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.2 Å
Deposited: 2024-09-03
Authors: Rao, Q., Chai, P., Zhang, K.
PDB entry 9dgu: structure of dynactin, dynein tail with two BICDR from dynein-dynactin-BICDR on microtubules
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2024-09-03
Authors: Rao, Q., Chai, P., Zhang, K.
PDB entry 9dgv: structure of dynactin, dynein tail with TRAK2 from dynein-dynactin-TRAK2 on microtubules
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.8 Å
Deposited: 2024-09-03
Authors: Rao, Q., Chai, P., Zhang, K.
PDB entry 9dgw: X-ray crystal structure of the Viperin-like enzyme from T. virens with bound CTP and SAM
Classification: ANTIVIRAL PROTEIN
Source organism: Trichoderma virens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-09-03
Authors: Lachowicz, J.C., Bonanno, J.B., Grove, T.L.
PDB entry 9dgx: Monoclinic form of autolysin amidase AmiE
Classification: HYDROLASE
Source organism: Staphylococcus epidermidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.691 Å
Deposited: 2024-09-03
Authors: Loll, P.J.
PDB entry 9dgy: Mycobacterium tuberculosis UvrD1 monomer-DNA complex
Classification: MOTOR PROTEIN/DNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2024-09-03
Authors: Chadda, A., Galburt, E.A.
PDB entry 9dgz: The Cryo-EM structure of recombinantly expressed apo hUGDH
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.06 Å
Deposited: 2024-09-03
Authors: Kadirvelraj, R., Walsh Jr, R.M., Wood, Z.W.
PDB entry 9dh0: The Cryo-EM structure of recombinantly expressed hUGDH in complex with UDP-4-keto-xylose
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2024-09-03
Authors: Kadirvelraj, R., Walsh Jr, R.M., Wood, Z.W.
PDB entry 9dh2: Structure of Fab in complex with NKG2D extracellular domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2024-09-03
Authors: Fallon, D., Huang, C.S.
PDB entry 9dh3: Cryo-EM structure of NLRP3 complex with Compound C
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2024-09-03
Authors: Matico, R., Grauwen, K., Van Gool, M., Muratore, E.M., Yu, X., Abdiaj, I., Adhikary, S., Adriaensen, I., Aranzazu, G.M., Alcazar, J., Bassi, M., Brisse, E., Canellas, S., Chaudhuri, S., Chauhan, D., Delgado, F., Dieguez-Vazquez, A., Du Jardin, M., Eastham, V., Finley, M., Jacobs, T., Keustermans, K., Kuhn, R., Llaveria, J., Leenaerts, J., Linares, M.L., Martin, M.L., Martinez, C., Miller, R., Munoz, F.M., Nooyens, A., Perez, L.B., Perrier, M., Pietrak, B., Serre, J., Sharma, S., Somers, M., Suarez, J., Tresadern, G., Trabanco, A.A., Van den Bulck, D., Van Hauwermeiren, F., Varghese, T., Vega, J.A., Youssef, S.A., Edwards, M.J., Oehlrich, D., Van Opdenbosch, N.
PDB entry 9dh4: Crystal structure of PIsnA complexed with L-Tyrosine
Classification: TRANSFERASE
Source organism: Photorhabdus luminescens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-09-03
Authors: Kim, W., Zhang, Y.J., Guo, M.
PDB entry 9dh5: State-1 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-09-03
Authors: Chai, P., Zhang, K.
PDB entry 9dh6: State-2 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-03
Authors: Chai, P., Zhang, K.
PDB entry 9dh7: State-4 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-03
Authors: Chai, P., Zhang, K.
PDB entry 9dh8: State-5 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-09-03
Authors: Chai, P., Zhang, K.
PDB entry 9dh9: State-7-Post-2 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-03
Authors: Chai, P., Zhang, K.
PDB entry 9dha: State-7-Post-1 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-09-03
Authors: Chai, P., Zhang, K.
PDB entry 9dhb: STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE 5 FROM GLYCINE MAX CULTIVAR ESSEX COMPLEXED WITH PLP-GLYCINE AND 5-FORMYLTETRAHYDROFOLATE
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-09-03
Authors: Beamer, L.J., Owuocha, L.F.
PDB entry 9dhc: The Retinoblastoma Protein with Mutation S751Y
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-09-03
Authors: Ruiz-Rivera, A., Castro, A., Burke, J.R.
PDB entry 9dhd: The ternary complex of DDB1, DDA1, DET1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-03
Authors: Schubert, A.F., Kschonsak, M., Harris, S.F.
PDB entry 9dhe: The crystal structure on the heme/hemoglobin transporter ChuA, in complex with heme
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-09-03
Authors: Fox, D., Grinter, R.
PDB entry 9dhf: The Retinoblastoma Protein with Mutation E554K
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-09-03
Authors: Ruiz-Rivera, A., Castro, A., Burke, J.R.
PDB entry 9dhg: DHODH in complex with Compound 5
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.386 Å
Deposited: 2024-09-03
Authors: Shaffer, P.L.
PDB entry 9dhh: DHODH in complex with Compound 8
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-09-03
Authors: Shaffer, P.L.
PDB entry 9dhi: DHODH in complex with Compound 7
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2024-09-03
Authors: Shaffer, P.L.
PDB entry 9dhj: DHODH in complex with Compound 15
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-09-03
Authors: Shaffer, P.L.
PDB entry 9dhk: RMI1-RMI2 bound to cyclic peptide L3
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-09-03
Authors: Bythell-Douglas, R., Lau, Y., Alcock, L.J., Patel, K., Gao, T., Deshpande, C.
PDB entry 9dhl: X-ray crystal structure of AmpC beta-lactamase with inhibitor
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-09-04
Authors: Liu, F., Shoichet, B.K.
PDB entry 9dhm: Crystal structure of PIsnA complexed with an isonitrile product
Classification: TRANSFERASE
Source organism: Photorhabdus luminescens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2024-09-04
Authors: Kim, W., Zhang, Y.J., Guo, M.
PDB entry 9dhn: Crystal structure of PIsnA complexed with an imine intermediate
Classification: TRANSFERASE
Source organism: Photorhabdus luminescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2024-09-04
Authors: Kim, W., Zhang, Y.J., Guo, M.
PDB entry 9dho: Structure of proteinase K from energy-filtered MicroED data
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.09 Å
Deposited: 2024-09-04
Authors: Clabbers, M.T.B., Hattne, J., Martynowycz, M.W., Gonen, T.
PDB entry 9dhp: Resting state 1 of the GluA2-gamma2 complex
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2024-09-04
Authors: Kumar Mondal, A., Carrillo, E., Jayaraman, V., Twomey, E.C.
PDB entry 9dhq: Resting state 2 of the GluA2-gamma2 complex
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.78 Å
Deposited: 2024-09-04
Authors: Kumar Mondal, A., Carrillo, E., Jayaraman, V., Twomey, E.C.
PDB entry 9dhr: Glutamate activated state of the GluA2-gamma2 complex
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2024-09-04
Authors: Kumar Mondal, A., Carrillo, E., Jayaraman, V., Twomey, E.C.
PDB entry 9dhs: Desensitized state 1 of the GluA2-gamma2 complex
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.48 Å
Deposited: 2024-09-04
Authors: Kumar Mondal, A., Carrillo, E., Jayaraman, V., Twomey, E.C.
PDB entry 9dht: Desensitized state 2 of the GluA2-gamma2 complex
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.31 Å
Deposited: 2024-09-04
Authors: Kumar Mondal, A., Carrillo, E., Jayaraman, V., Twomey, E.C.
PDB entry 9dhu: The Retinoblastoma Protein with Mutation E533K
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2024-09-04
Authors: Ruiz-Rivera, A., Castro, A., Burke, J.R.
PDB entry 9dhw: Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-09-04
Authors: Lin, Z.J., Cui, J., Du, J., Habib, R., Kulp, D., Pallesen, J.
PDB entry 9dhx: human Argonaute2 R315V/H316A - miR-122 in complex with a fully complementary target
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-09-04
Authors: Sarkar, S., Gebert, L.F.R., MacRae, I.J.
PDB entry 9dhy: Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-09-04
Authors: Yu, X., Saphire, E.O.
PDB entry 9dhz: Cryo-EM structure of HURP bound to a microtubule
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-09-04
Authors: Perez-Bertoldi, J.M., Nogales, E.
PDB entry 9di0: Cryo-EM structure of Kif18A bound to a microtubule
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-09-04
Authors: Perez-Bertoldi, J.M., Nogales, E.
PDB entry 9di1: Cryo-EM structure of the USP1-UAF1-Ubiquitin complex inhibited by KSQ-4279
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-09-04
Authors: Griffith, J.P., Wylie, A.A., Ali, J.A.
PDB entry 9di2: Cryo-EM structure of the USP1-UAF1-Ubiquitin-VS complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-09-04
Authors: Griffith, J.P.
PDB entry 9di3: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-09-05
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9di4: RMI1-RMI2 bound to cyclic peptide L4
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.696 Å
Deposited: 2024-09-05
Authors: Bythell-Douglas, R., Lau, Y.H., Alcock, L.J., Gao, T., Deshpande, C., Patel, K.
PDB entry 9di6: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM679 (ethyl 1,4-dimethyl-5-((6-(trifluoromethyl)pyridin-3-yl)methyl)-1H-pyrazole-3-carboxylate)
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-09-05
Authors: Deng, X., Tomchick, D., Phillips, M.
PDB entry 9di8: Ca2+ bound aplysia Slo1 - R196Q
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-09-05
Authors: Contreras, G.F., Shen, R., Latorre, R., Perozo, E.
PDB entry 9di9: Rat branched chain ketoacid dehydrogenase kinase in complex with inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.155 Å
Deposited: 2024-09-05
Authors: Liu, S.
PDB entry 9dia: Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin candidate 2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-09-05
Authors: Werther, R., Nguyen, A., Estrada Alamo, K.A., Wang, X., Campbell, M.G.
PDB entry 9dib: Rous sarcoma virus frameshifting pseudoknot RNA
Classification: RNA
Source organism: Rous sarcoma virus - Prague C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2024-09-05
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9dic: Apo aplysia Slo1 - R196Q
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-09-05
Authors: Contreras, G.F., Shen, R., Latorre, R., Perozo, E.
PDB entry 9did: Rous sarcoma virus frameshifting pseudoknot RNA
Classification: RNA
Source organism: Rous sarcoma virus - Prague C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-09-05
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9die: Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 1.85 A resolution
Classification: LYASE
Source organism: Sicarius terrosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-09-05
Authors: Sundman, A.K., Montfort, W.R., Binford, G.J., Cordes, M.H.
PDB entry 9dif: CBASS Pseudomonas syringae Cap5 tetramer with DNA duplex and 3'2'-c-GAMP cyclic dinucleotide ligand
Classification: IMMUNE SYSTEM
Source organism: Pseudomonas syringae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2024-09-05
Authors: Rechkoblit, O., Aggarwal, A.K.
PDB entry 9dig: Rous sarcoma virus frameshifting pseudoknot RNA EM straight dimer
Classification: RNA
Source organism: Rous sarcoma virus - Prague C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-09-05
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9dih: CBASS Pseudomonas syringae Cap5 tetramer with DNA duplex and 3'2'-c-diAMP cyclic dinucleotide ligand
Classification: IMMUNE SYSTEM
Source organism: Pseudomonas syringae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-09-05
Authors: Rechkoblit, O., Aggarwal, A.K.
PDB entry 9dii: Rous sarcoma virus frameshifting pseudoknot RNA EM straight dimer
Classification: RNA
Source organism: Rous sarcoma virus - Prague C
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-09-05
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9dij: 4 Angstrom structure of the human TRPV3 pentamer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2024-09-05
Authors: Lansky, S., Clarke, O.B., Scheuring, S.
PDB entry 9dik: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM681 (N-cyclopropyl-1,4-dimethyl-5-((6-(trifluoromethyl)pyridin-3-yl)methyl)-1H-pyrazole-3-carboxamide)
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-09-05
Authors: Deng, X., Tomchick, D., Phillips, M.
PDB entry 9dil: Cryo-EM structure of VCP/p97 in complex with VCPIP1 (VCIP135)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-09-05
Authors: Vostal, L.E., Reynolds, M.J., Kapoor, T.M.
PDB entry 9dim: Q23.MD39 in Complex with Fab from antibody 35O22
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-09-05
Authors: Lin, Z.J., Cui, J., Du, J., Habib, R., Kulp, D., Pallesen, J.
PDB entry 9din: Structure of ClpC1 N-terminal Domain complexed with semi-synthetic Rufomycin analog
Classification: CHAPERONE/ANTIBIOTIC
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-09-05
Authors: Abad-Zapatero, C., Wolf, N.M.
PDB entry 9dio: Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/Texas/37/2024 (H5N1) with LSTc
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-09-05
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 9dip: Crystal structure of H5 hemagglutinin from the influenza virus A/Texas/37/2024 (H5N1) with LSTa
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-09-05
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 9diq: Crystal structure of Apo-H5 hemagglutinin from the influenza virus A/Texas/37/2024 (H5N1)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-09-05
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 9dir: Cryo-EM structure of the heme/hemoglobin transporter ChuA, in complex with de novo designed binder G7
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli CFT073; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-09-05
Authors: Fox, D., Venugopal, H., Lupton, C.J., Spicer, B.A., Grinter, R.
PDB entry 9dis: Cryo-EM structure of the heme/hemoglobin transporter ChuA, in complex with de novo designed binder H3
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli CFT073; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2024-09-05
Authors: Fox, D., Venugopal, H., Lupton, C.J., Spicer, B.A., Grinter, R.
PDB entry 9dit: Ca2+ bound aplysia Slo1 R199Q
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-05
Authors: Gustavo, G.F., Shen, R., Latorre, R., Perozo, E.
PDB entry 9diu: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-09-06
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9div: The crystal structure of de novo designed ChuA binding protein C8
Classification: TRANSPORT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2024-09-06
Authors: Fox, D., Grinter, R.
PDB entry 9diw: Crystal structure of the SARS-CoV-2 main protease in complex with covalent tripeptidyl inhibitor NIP-22c
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-09-06
Authors: Engel, J.E., Al-Homoudi, A.I., Muczynski, M.D., Brunzelle, J.S., Kovari, L.C.
PDB entry 9dix: HCMV gH/UL116/UL141 3-mer complex, ectodomain
Classification: VIRAL PROTEIN
Source organism: Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-09-06
Authors: Norris, M.J., Benedict, C.A., Kamil, J.P., Saphire, E.O.
PDB entry 9diy: Local Cryo-EM structure of HCMV gH/UL116 interaction
Classification: VIRAL PROTEIN
Source organism: Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.36 Å
Deposited: 2024-09-06
Authors: Norris, M.J., Benedict, C.A., Kamil, J.P., Saphire, E.O.
PDB entry 9diz: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM959 (6-cyclopropyl-2,4-dimethyl-3-((6-(trifluoromethyl)pyridin-3-yl)methyl)-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one)
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-09-06
Authors: Deng, X., Tomchick, D., Phillips, M.
PDB entry 9dj7: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-09-06
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dj8: RNA-nsp9 bound to the NiRAN domain of the E-RTC with an empty G-pocket
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-09-06
Authors: Small, G.I., Darst, S.A., Campbell, E.A.
PDB entry 9dj9: HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE (VHR) in distinct apo form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.924 Å
Deposited: 2024-09-06
Authors: Keedy, D.A., Lemberikman, A.M., Isiorho, E.A., Aleshin, A.E., Wu, J., Lambert, L.J., Cosford, N.D.P., Tautz, L.
PDB entry 9dja: T4 Lysozyme E5H/I9H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djb: T4 Lysozyme A73H/G77H
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djc: T4 Lysozyme A73H/G77H/Y139F
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djd: T4 Lysozyme A73H/G77H/Y139F co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9dje: T4 Lysozyme T109H/G113H
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djf: T4 Lysozyme T109H/G113H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djg: T4 Lysozyme T115H/R119H
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Tregubenko, A., Ernst, O.P.
PDB entry 9djh: T4 Lysozyme T115H/R119H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Tregubenko, A., Ernst, O.P.