LiteFold/PDB huggingface dataset:
PDB entry 7lxv: Structure of human 20S proteasome with bound MPI-5
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-03-05
Authors: Metcalfe, R.D., Morton, C.J., Liu, B., Xie, S.C., Hanssen, E., Leis, A.P., Tilley, L., Griffin, M.D.W.
PDB entry 7lxw: SARS-CoV-2 S/S2M11/S2X333 Local Refinement
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-03-05
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7lxx: SARS-CoV-2 S/S2M11/S2L28 Local Refinement
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-03-05
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7lxy: SARS-CoV-2 S/S2M11/S2X333 Global Refinement
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2021-03-05
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7lxz: SARS-CoV-2 S/S2M11/S2L28 Global Refinement
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-03-05
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ly0: SARS-CoV-2 S/S2M11/S2M28 Local Refinement
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-03-05
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ly1: Crystal structure of Pseudomonas aeruginosa PBP3 in complex with vaborbactam
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-03-05
Authors: van den Akker, F., Kumar, V.
PDB entry 7ly2: SARS-CoV-2 S/S2M11/S2M28 Global Refinement
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2021-03-05
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ly3: Crystal structure of SARS-CoV-2 S NTD bound to S2M28 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-03-05
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ly4: Cryo-EM structure of the elongation module of the bacillamide NRPS, BmdB, in complex with the oxidase, BmdC
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermoactinomyces vulgaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-03-05
Authors: Sharon, I., Fortinez, C.M., Schmeing, T.M.
PDB entry 7ly5: Proteolyzed crystal structure of the bacillamide NRPS, BmdB, in complex with the oxidase BmdC
Classification: BIOSYNTHETIC PROTEIN/OXIDOREDUCTASE
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-05
Authors: Fortinez, C.M., Schmeing, T.M.
PDB entry 7ly6: Structure of a trans-acting NRPS oxidase, BmdC, involved in bacillamide biosynthesis
Classification: FLAVOPROTEIN
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2021-03-05
Authors: Fortinez, C.M., Bloudoff, K., Schmeing, T.M.
PDB entry 7ly7: Crystal structure of the elongation module of the bacillamide NRPS, BmdB, in complex with the oxidase BmdC
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2021-03-05
Authors: Fortinez, C.M., Sharon, I., Schmeing, T.M.
PDB entry 7ly8: The internal aldimine form of the wild-type Salmonella Typhimurium Tryptophan Synthase in complex with two molecules of N-(4'-trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor at the enzyme alpha-site, a single F6F molecule at the enzyme beta-site, and sodium ion at the metal coordination site at 1.55 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring
Classification: LYASE/LYASE INHIBITOR
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-03-06
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7ly9: Cryo-EM structure of 2909 Fab in complex with 3BNC117 Fab and CAP256.wk34.c80 SOSIP.RnS2 N160K HIV-1 Env trimer
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2021-03-06
Authors: Gorman, J., Kwong, P.D.
PDB entry 7lya: Cryo-EM structure of the human nucleosome core particle with linked histone proteins H2A and H2B
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2021-03-06
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, D., Mer, E., Mer, G.
PDB entry 7lyb: Cryo-EM structure of the human nucleosome core particle in complex with BRCA1-BARD1-UbcH5c
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2021-03-06
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, D., Mer, E., Mer, G.
PDB entry 7lyc: Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A Lys13 and Lys15 in complex with BARD1 (residues 415-777)
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2021-03-06
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, D., Mer, E., Mer, G.
PDB entry 7lyd: Crystal Structure of Ebola zaire Envelope glycoprotein GP in complex with compound ARN0075146
Classification: VIRAL PROTEIN
Source organism: Zaire ebolavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-03-06
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7lye: Myotoxin I from Bothrops moojeni co-crystallized with synthetic inhibitor Varespladib (LY315920)
Classification: TOXIN
Source organism: Bothrops moojeni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.758 Å
Deposited: 2021-03-06
Authors: Salvador, G.H.M., Borges, R.J., Fontes, M.R.M.
PDB entry 7lyf: Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold
Classification: RNA
Source organism: Dengue virus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2021-03-06
Authors: Lee, E.H., Choi, K.H.
PDB entry 7lyg: Zika virus RNA promoter stem-loop A with tRNA-scaffold
Classification: RNA
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.804 Å
Deposited: 2021-03-06
Authors: Lee, E.H., Choi, K.H.
PDB entry 7lyh: Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAWJ9-36-1
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-07
Authors: Sacco, M., Wang, J., Chen, Y.
PDB entry 7lyi: Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAWJ9-36-3
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-07
Authors: Sacco, M., Wang, J., Chen, Y.
PDB entry 7lyj: SARS-CoV-2 frameshifting pseudoknot RNA
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2021-03-07
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 7lyk: South African (B.1.351) SARS-CoV-2 spike protein variant (S-GSAS-B.1.351) in the 2-RBD-up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2021-03-07
Authors: Gobeil, S., Acharya, P.
PDB entry 7lyl: South African (B.1.351) SARS-CoV-2 spike protein variant (S-GSAS-B.1.351) in the RBD-down conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2021-03-07
Authors: Gobeil, S., Acharya, P.
PDB entry 7lym: South African (B.1.351) SARS-CoV-2 spike protein variant (S-GSAS-B.1.351) in the RBD-down conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2021-03-07
Authors: Gobeil, S., Acharya, P.
PDB entry 7lyn: South African (B.1.351) SARS-CoV-2 spike protein variant (S-GSAS-B.1.351) in the 1-RBD-up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2021-03-07
Authors: Gobeil, S., Acharya, P.
PDB entry 7lyo: South African (B.1.351) SARS-CoV-2 spike protein variant (S-GSAS-B.1.351) in the 1-RBD-up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2021-03-07
Authors: Gobeil, S., Acharya, P.
PDB entry 7lyp: South African (B.1.351) SARS-CoV-2 spike protein variant (S-GSAS-B.1.351) in the 1-RBD-up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2021-03-07
Authors: Gobeil, S., Acharya, P.
PDB entry 7lyq: South African (B.1.351) SARS-CoV-2 spike protein variant (S-GSAS-B.1.351) in the 1-RBD-up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2021-03-07
Authors: Gobeil, S., Acharya, P.
PDB entry 7lys: Cryo-EM structure of CasPhi-2 (Cas12j) bound to crRNA and DNA
Classification: VIRAL PROTEIN/RNA/DNA
Source organism: Biggievirus Mos11; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2021-03-08
Authors: Pausch, P., Soczek, K., Nogales, E., Doudna, J.
PDB entry 7lyt: Cryo-EM structure of CasPhi-2 (Cas12j) bound to crRNA and Phosphorothioate-DNA
Classification: VIRAL PROTEIN/RNA/DNA
Source organism: Biggievirus Mos11; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-03-08
Authors: Pausch, P., Soczek, K., Nogales, E., Doudna, J.
PDB entry 7lyu: Reelin repeat 8
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-03-08
Authors: Turk, L.S., Comoletti, D.
PDB entry 7lyv: Crystal structure of the HCMV pentamer-specific antibody 1-103
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-08
Authors: Wrapp, D., Jones, H.G., McLellan, J.S.
PDB entry 7lyw: Crystal structure of the HCMV pentamer-specific antibody 2-25
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2021-03-08
Authors: Wrapp, D., Mishra, A.K., McLellan, J.S.
PDB entry 7lyx: Crystal structure of human CYP8B1 in complex with (S)-tioconazole
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-08
Authors: Liu, J., Scott, E.E.
PDB entry 7lyy: Crystal Structure of Ebola zaire Envelope glycoprotein GP in complex with compound ARN0075164
Classification: VIRAL PROTEIN
Source organism: Zaire ebolavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2021-03-08
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7lyz: PROTEIN MODEL BUILDING BY THE USE OF A CONSTRAINED-RESTRAINED LEAST-SQUARES PROCEDURE
Classification: HYDROLASE(O-GLYCOSYL)
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1977-05-06
Authors: Moult, J., Yonath, A., Sussman, J., Herzberg, O., Podjarny, A., Traub, W.
PDB entry 7lz0: Structure of glutamate receptor-like channel GLR3.4 ligand-binding domain in complex with glutamate
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2021-03-08
Authors: Gangwar, S.P., Green, M.N., Sobolevsky, A.I.
PDB entry 7lz1: Structure of glutamate receptor-like channel GLR3.4 ligand-binding domain in complex with serine
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2021-03-08
Authors: Gangwar, S.P., Green, M.N., Sobolevsky, A.I.
PDB entry 7lz2: Structure of glutamate receptor-like channel GLR3.4 ligand-binding domain in complex with methionine
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-03-08
Authors: Gangwar, S.P., Green, M.N., Sobolevsky, A.I.
PDB entry 7lz3: Computational design of constitutively active cGAS
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2021-03-08
Authors: Dowling, Q., Volkman, H.E., Gray, E.E., Ovchinnikov, S., Cambier, S., Bera, A.K., Bick, M., Kang, A., Stetson, D.B., King, N.P.
PDB entry 7lz4: Crystal structure of A211D mutant of Protein Kinase A RIa subunit, a Carney Complex mutation
Classification: TRANSFERASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.155 Å
Deposited: 2021-03-08
Authors: Del Rio, J., Wu, J., Taylor, S.S.
PDB entry 7lz5: Crystal structure of oncogenic KRAS Q61E GMPPCP-bound
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-03-09
Authors: Carey, L.M., Campbell, S.L.
PDB entry 7lz6: The Cryo-EM structure of a complex between GAD65 and b96.11 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.3 Å
Deposited: 2021-03-09
Authors: Reboul, C.F., Le, S.N., Williams, D.E., Buckle, A.M.
PDB entry 7lz7: Tubulin-RB3_SLD-TTL in complex with compound 5k
Classification: CELL CYCLE/INHIBITOR
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-03-09
Authors: White, S.W., Yun, M.
PDB entry 7lz8: Tubulin-RB3_SLD-TTL in complex with compound 5t
Classification: CELL CYCLE/INHIBITOR
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2021-03-09
Authors: White, S.W., Yun, M.
PDB entry 7lz9: Inactive form of VanR from S. coelicolor
Classification: TRANSCRIPTION
Source organism: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-03-09
Authors: Maciunas, L.J., Loll, P.J.
PDB entry 7lza: Activated form of VanR from S. coelicolor
Classification: TRANSCRIPTION
Source organism: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2021-03-09
Authors: Maciunas, L.J., Loll, P.J.
PDB entry 7lzb: Crystal Structure of SETD2 bound to Compound 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2021-03-09
Authors: Farrow, N.A., Boriack-Sjodin, P.
PDB entry 7lzd: Crystal Structure of SETD2 bound to Compound 35
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-03-09
Authors: Farrow, N.A., Boriack-Sjodin, P.
PDB entry 7lze: Cryo-EM Structure of disulfide stabilized HMPV F v4-B
Classification: VIRAL PROTEIN
Source organism: Human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2021-03-09
Authors: Gorman, J., Kwong, P.D.
PDB entry 7lzf: Crystal Structure of SETD2 bound to Compound 57
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2021-03-09
Authors: Farrow, N.A., Boriack-Sjodin, P.
PDB entry 7lzg: CRYSTAL STRUCTURE OF CBS DOMAIN PROTEIN FROM STREPTOCOCCUS PNEUMONIAE TIGR4
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2021-03-09
Authors: Chang, C., Zhou, M., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 7lzh: Structure of the glutamate receptor-like channel AtGLR3.4
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2021-03-09
Authors: Gangwar, S.P., Green, M.N., Sobolevsky, A.I.
PDB entry 7lzi: Structure of the glutamate receptor-like channel AtGLR3.4
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.39 Å
Deposited: 2021-03-09
Authors: Gangwar, S.P., Green, M.N., Sobolevsky, A.I.
PDB entry 7lzj: DpK2 bacteriophage tail spike depolymerase
Classification: SUGAR BINDING PROTEIN
Source organism: Klebsiella phage GH-K3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-03-10
Authors: Belousoff, M.J., Bamert, R.S., Dunstan, R.A., Lithgow, T.
PDB entry 7lzk: DHP B in complex with 2,4-Dichlorophenol substrate
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2021-03-10
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 7lzl: Solution NMR structure of an avian defensin, AvBD3, from mallard
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-03-10
Authors: Rosengren, K.J., Andersson, H.S.
PDB entry 7lzm: COMPARISON OF THE CRYSTAL STRUCTURE OF BACTERIOPHAGE T4 LYSOZYME AT LOW, MEDIUM, AND HIGH IONIC STRENGTHS
Classification: HYDROLASE (O-GLYCOSYL)
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1991-01-25
Authors: Bell, J.A., Wilson, K., Zhang, X.-J., Faber, H.R., Nicholson, H., Matthews, B.W.
PDB entry 7lzn: DHP B in complex with 2,4-Dichlorophenol substrate
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-03-10
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 7lzo: DHP B in complex with 2,4-Dibromophenol substrate
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-03-10
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 7lzp: LC/A-JPU-B9-JPU-A11-JPU-G11
Classification: ANTITOXIN
Source organism: Clostridium botulinum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2021-03-10
Authors: Lam, K., Jin, R.
PDB entry 7lzq: Crystal structure of the BCL6 BTB domain in complex with OICR-4425
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2021-03-10
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 7lzr: Crystal structure of the BCL6 BTB domain in complex with OICR-10256
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2021-03-10
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 7lzs: Crystal structure of the BCL6 BTB domain in complex with OICR-11029
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2021-03-10
Authors: Kuntz, D.A., Prive, G.G.
PDB entry 7lzt: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 8b
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7lzu: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 12b
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7lzv: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 19b
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7lzw: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 20b (deuterated analog of 19b)
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7lzx: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 1c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7lzy: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 3c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7lzz: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 5c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7m00: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 13c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7m01: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 14c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7m02: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 17c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7m03: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 18c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-10
Authors: Kashipathy, M.M., Lovell, S., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7m04: Structure of SARS-CoV-2 3CL protease in complex with inhibitor 21c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-03-10
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Kim, Y., Perera, K.D., Jesri, A.R.M., Nguyen, H.N., Baird, M.A., Miller, M.J., Groutas, W.C., Chang, K.O.
PDB entry 7m05: CryoEM structure of PRMT5 bound to covalent PBM-site inhibitor BRD-6988
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2021-03-10
Authors: McMillan, B.J., McKinney, D.C., Timm, D.E.
PDB entry 7m06: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, Y110F mutant with R,R-bislysine bound at the allosteric site at 2.7 Angstrom
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-10
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7m07: Pre-catalytic ternary complex of DNA Polymerase Lambda with bound 1-nt gapped SSB substrate and incoming dUMPNPP
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2021-03-10
Authors: Kaminski, A.M., Bebenek, K., Pedersen, L.C., Kunkel, T.A.
PDB entry 7m08: Post-catalytic nicked complex of DNA Polymerase Lambda with bound 1-nt gapped SSB substrate and incoming dUMPNPP
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-03-10
Authors: Kaminski, A.M., Bebenek, K., Pedersen, L.C., Kunkel, T.A.
PDB entry 7m09: Pre-catalytic quaternary complex of DNA Polymerase Lambda with blunt-ended DSB substrate and incoming dUMPNPP
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-03-10
Authors: Kaminski, A.M., Bebenek, K., Pedersen, L.C., Kunkel, T.A.
PDB entry 7m0a: Incomplete in crystallo incorporation by DNA Polymerase Lambda bound to blunt-ended DSB substrate and incoming dTTP
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-03-10
Authors: Kaminski, A.M., Bebenek, K., Pedersen, L.C., Kunkel, T.A.
PDB entry 7m0b: Pre-catalytic quaternary complex of DNA Polymerase Lambda with bound mismatched DSB and incoming dUMPNPP
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-10
Authors: Kaminski, A.M., Bebenek, K., Pedersen, L.C., Kunkel, T.A.
PDB entry 7m0c: Post-catalytic nicked complex of DNA Polymerase Lambda with bound mismatched DSB substrate
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2021-03-10
Authors: Kaminski, A.M., Bebenek, K., Pedersen, L.C., Kunkel, T.A.
PDB entry 7m0d: Pre-catalytic quaternary complex of DNA Polymerase Lambda with bound complementary DSB substrate and incoming dUMPNPP
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-03-10
Authors: Kaminski, A.M., Bebenek, K., Pedersen, L.C., Kunkel, T.A.
PDB entry 7m0e: Pre-catalytic synaptic complex of DNA Polymerase Lambda with gapped DSB substrate and incoming dUMPNPP
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-03-10
Authors: Kaminski, A.M., Bebenek, K., Pedersen, L.C., Kunkel, T.A.
PDB entry 7m0f: DHP B in complex with 4-bromophenol ligand
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2021-03-10
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 7m0g: Magic Angle Spinning NMR Structure of Human Cofilin-2 Assembled on Actin Filaments
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens
Experimental method: SOLID-STATE NMR
Deposited: 2021-03-10
Authors: Kraus, J., Polenova, T., Perilla, J.P., Xu, C.
PDB entry 7m0h: DHP B in complex with 4-chlorophenol ligand
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2021-03-10
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 7m0i: Crystal structure of a human metapneumovirus subtype B2 trimeric fusion protein
Classification: VIRAL PROTEIN
Source organism: Human metapneumovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2021-03-11
Authors: Huang, J., Mousa, J.J.
PDB entry 7m0j: SARS-CoV-2 u1S2q All Down RBD State Spike Protein Trimer - asymmetric refinement
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2021-03-11
Authors: Henderson, R., Acharya, P.
PDB entry 7m0k: HPK1 IN COMPLEX WITH COMPOUND 1
Classification: TRANSFERASE/TRANSFERASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2021-03-11
Authors: Lesburg, C.A.
PDB entry 7m0l: HPK1 IN COMPLEX WITH COMPOUND 1
Classification: TRANSFERASE/TRANSFERASE inhibiotr
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2021-03-11
Authors: Lesburg, C.A.
PDB entry 7m0m: HPK1 IN COMPLEX WITH COMPOUND 1
Classification: TRANSFERASE/TRANSFERASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-03-11
Authors: Lesburg, C.A.
PDB entry 7m0n: The crystal structure of wild type PA endonuclease (A/Vietnam/1203/2004) in complex with Raltegravir
Classification: VIRAL PROTEIN/Inhibitor
Source organism: Influenza A virus (A/ruddy turnstone/New Jersey/Sg-00524/2008(H4N6))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-03-11
Authors: Cuypers, M.G., Slavish, P.J., Yun, M.K., Dubois, R., Rankovic, Z., White, S.W.
PDB entry 7m0o: DGT-28 EPSPS
Classification: BIOSYNTHETIC PROTEIN, TRANSFERASE
Source organism: Streptomyces sviceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2021-03-11
Authors: Chekan, J.R., Nair, S.K.
PDB entry 7m0q: Crystal structure of deep network hallucinated protein 0738_mod
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-03-11
Authors: Pellock, S.J., Bera, A.K., Anishchenko, I., Baker, D.
PDB entry 7m0r: Cryo-EM structure of the Sema3A/PlexinA4/Neuropilin 1 complex
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-03-11
Authors: Lu, D., Shang, G., He, X., Bai, X., Zhang, X.
PDB entry 7m0s: N-terminal domain of PmrA from Acinetobacter baumannii
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2021-03-11
Authors: Palethorpe, S., Milton, M.E., Cavanagh, J.
PDB entry 7m0t: Crystal structure of the BRAF:MEK1 kinases in complex with AMPPNP and Selumetinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2021-03-11
Authors: Li, K., Gonzalez Del-Pino, G., Ha, B.H., Park, E., Eck, M.J.
PDB entry 7m0u: Crystal structure of the BRAF:MEK1 kinases in complex with AMPPNP and Binimetinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2021-03-11
Authors: Li, K., Gonzalez Del-Pino, G., Ha, B.H., Park, E., Eck, M.J.
PDB entry 7m0v: Crystal structure of the BRAF:MEK1 kinases in complex with AMPPNP and Cobimetinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2021-03-11
Authors: Li, K., Gonzalez Del-Pino, G., Ha, B.H., Park, E., Eck, M.J.
PDB entry 7m0w: Crystal structure of the BRAF:MEK1 kinases in complex with AMPPNP and Pimasertib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2021-03-11
Authors: Li, K., Gonzalez Del-Pino, G., Ha, B.H., Park, E., Eck, M.J.
PDB entry 7m0x: Crystal structure of the BRAF:MEK1 kinases in complex with AMPPNP and PD0325901
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2021-03-11
Authors: Li, K., Gonzalez Del-Pino, G., Ha, B.H., Park, E., Eck, M.J.
PDB entry 7m0y: Crystal structure of the BRAF:MEK1 kinases in complex with AMPPNP and Trametinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2021-03-11
Authors: Li, K., Gonzalez Del-Pino, G., Ha, B.H., Park, E., Eck, M.J.
PDB entry 7m0z: Crystal structure of the BRAF:MEK1 kinases in complex with AMPPNP and CH5126766
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2021-03-11
Authors: Li, K., Gonzalez Del-Pino, G., Ha, B.H., Park, E., Eck, M.J.
PDB entry 7m10: PHF2 PHD Domain Complexed with Peptide From N-terminus of VRK1
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2021-03-11
Authors: Horton, J.R., Cheng, X.
PDB entry 7m11: L-asparaginase from Escherichia coli with bound Aspartic acid
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-03-11
Authors: Souza, T.A.C.B., Morais, S.B., Morini, F.S., Meissner, G.O.
PDB entry 7m12: TVV2 capsid protein
Classification: VIRAL PROTEIN
Source organism: Trichomonas vaginalis virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-03-12
Authors: Zhou, H.Z., Stevens, A.W., Cui, Y.X., Muratore, K.A., Johnson, P.J.
PDB entry 7m13: Crystal structure of CJ1428, a GDP-D-GLYCERO-L-GLUCO-HEPTOSE SYNTHASE from campylobacter jejuni in the presence of NADPH
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-03-12
Authors: Anderson, T.K., Thoden, J.B., Raushel, F.M., Holden, H.M.
PDB entry 7m14: x-ray structure of cj1430 in the presence of GDP, a GDP-D-glycero-4-keto-D-lyxo-heptose-3,5-epimerase from campylobacter jejuni
Classification: ISOMERASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-12
Authors: Girardi, N.M., Thoden, J.B., Raushel, F.M., Holden, H.M.
PDB entry 7m15: crystal structure of cj1430 in the presence of GDP-D-glycero-L-gluco-heptose, a GDP-D-glycero-4-keto-D-lyxo-heptose-3,5-epimerase from campylobacter jejuni
Classification: ISOMERASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-03-12
Authors: Girardi, N.M., Thoden, J.B., Raushel, F.M., Holden, H.M.
PDB entry 7m16: Triazole-based BET family bromodomain inhibitor bound to BRD4(D1)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2021-03-12
Authors: Johnson, J.A., Pomerantz, W.
PDB entry 7m17: SN-407-LRRC8A in MSP1E3D1 lipid nanodiscs (Pose-1)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2021-03-12
Authors: Kern, D.M., Gerber, E.E., Brohawn, S.G.
PDB entry 7m18: HeLa-tubulin in complex with cryptophycin 1
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2021-03-12
Authors: Eren, E.
PDB entry 7m19: SN-407-LRRC8A in MSP1E3D1 lipid nanodiscs (Pose-2)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2021-03-12
Authors: Kern, D.M., Gerber, E.E., Brohawn, S.G.
PDB entry 7m1a: SusE-like protein BT2857
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2021-03-12
Authors: Suits, M.D.L.
PDB entry 7m1b: SusE-like protein BT2857
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-03-12
Authors: Suits, M.D.L.
PDB entry 7m1c: Crystal structure of the HCMV pentamer-specific antibody 1-32
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-12
Authors: Wrapp, D., McLellan, J.S.
PDB entry 7m1d: Structural and functional studies about scorpine showed the presence of blocking channel and cytolytic activities as well as two different structural domains
Classification: TOXIN
Source organism: Pandinus imperator
Experimental method: SOLUTION NMR
Deposited: 2021-03-12
Authors: del Rio-Portilla, F., Lopez-Giraldo, A.E.
PDB entry 7m1e: Structural and functional studies about scorpine showed the presence of blocking channel and cytolytic activities as well as two different structural domains
Classification: TOXIN
Source organism: Pandinus imperator
Experimental method: SOLUTION NMR
Deposited: 2021-03-12
Authors: del Rio, J.F., Lopez, A.E., Titaux, G.
PDB entry 7m1h: Crystal structure of LC/A-JPU-C10-JPU-D12-JPU-B8-JPU-G3-ciA-F12-ciA-D12
Classification: ANTITOXIN
Source organism: Clostridium botulinum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2021-03-13
Authors: Lam, K., Jin, R.
PDB entry 7m1i: Crystal structure of dehaloperoxidase B in complex with 2,6-dichlorophenol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2021-03-13
Authors: Ghiladi, R.A., de Serrano, V.S., Malewschik, T.
PDB entry 7m1j: Crystal structure of dehaloperoxidase B in complex with 2,6-dibromophenol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.554 Å
Deposited: 2021-03-13
Authors: Ghiladi, R.A., de Serrano, V.S., Malewschik, T.
PDB entry 7m1k: Crystal structure of dehaloperoxidase B in complex with 2,6-difluorophenol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.795 Å
Deposited: 2021-03-13
Authors: Ghiladi, R.A., de Serrano, V.S., Malewschik, T.
PDB entry 7m1l: Crystal structure of Pseudomonas aeruginosa ClpP2
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-13
Authors: Hall, B.M., Grant, R.A., Baker, T.A., Sauer, R.T.
PDB entry 7m1m: Crystal structure of Pseudomonas aeruginosa ClpP1
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-13
Authors: Mawla, G.D., Grant, R.A., Baker, T.A., Sauer, R.T.
PDB entry 7m1n: Wild-type Hydrogenobacter thermophilus ferredoxin 1
Classification: ELECTRON TRANSPORT
Source organism: Hydrogenobacter thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2021-03-13
Authors: Steindel, P.S., Li, B., Elliott, S.J.
PDB entry 7m1o: Hydrogenobacter thermophilus ferredoxin 1 S64A variant
Classification: ELECTRON TRANSPORT
Source organism: Hydrogenobacter thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98389 Å
Deposited: 2021-03-13
Authors: Steindel, P.S., Li, B., Elliott, S.J.
PDB entry 7m1p: Human ABCA4 structure in the unbound state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-03-14
Authors: Scortecci, J.F., Van Petegem, F., Molday, R.S.
PDB entry 7m1q: Human ABCA4 structure in complex with N-ret-PE
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2021-03-14
Authors: Scortecci, J.F., Van Petegem, F., Molday, R.S.
PDB entry 7m1r: Crystal structure of a 6-phospho-beta-galactosidase from Bacillus licheniformis
Classification: HYDROLASE
Source organism: Bacillus licheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2021-03-14
Authors: Liberato, M.V., Popov, A., Polikarpov, I.
PDB entry 7m1s: Crystal structure of human guanylate-binding protein 2 (hGBP2) K51A mutant
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2021-03-15
Authors: Roy, S., Wang, B., Tian, Y., Yin, Q.
PDB entry 7m1t: Crystal structure of an archaeal CNNM, MtCorB, with C-terminal deletion in complex with Mg2+-ATP
Classification: MEMBRANE PROTEIN
Source organism: Methanoculleus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.26 Å
Deposited: 2021-03-15
Authors: Chen, Y.S., Kozlov, G., Gehring, K.
PDB entry 7m1u: Crystal structure of an archaeal CNNM, MtCorB, R235L mutant with C-terminal deletion
Classification: MEMBRANE PROTEIN
Source organism: Methanoculleus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2021-03-15
Authors: Chen, Y.S., Kozlov, G., Gehring, K.
PDB entry 7m1v: Structure of Zika virus NS2b-NS3 protease mutant binding the compound NSC86314 in the super-open conformation
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-03-15
Authors: Aleshin, A.E., Shiryaev, S.A., Liddington, R.C.
PDB entry 7m1w: NMR structure of the Human T-cell leukemia virus 1 matrix protein
Classification: VIRAL PROTEIN
Source organism: Human T-cell leukemia virus type I
Experimental method: SOLUTION NMR
Deposited: 2021-03-15
Authors: Herrmann, D., Saad, J.S.
PDB entry 7m1x: Cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; unidentified; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-03-15
Authors: Tan, D., Lewis, T.
PDB entry 7m1y: The crystal structure of Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with ebselen
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2021-03-15
Authors: Osipiuk, J., Tesar, C., Endres, M., Maltseva, N., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7m1z: Targeting Enterococcus faecalis HMG-CoA reductase with a novel non-statin inhibitor
Classification: ANTIBIOTIC
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2021-03-15
Authors: Bose, S., Steussy, C.N., Stauffacher, C.V.
PDB entry 7m20: 18-mer HeLa-tubulin rings in complex with Cryptophycin 1
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2021-03-15
Authors: Eren, E.
PDB entry 7m22: Cryo-EM structure of the HCMV pentamer bound by human neuropilin 2
Classification: VIRAL PROTEIN/HOST RECEPTOR
Source organism: Homo sapiens; Human cytomegalovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2021-03-15
Authors: Wrapp, D., McLellan, J.S.
PDB entry 7m23: Human carbonic anhydrase II in complex with troglitazone
Classification: LYASE/LYASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2021-03-16
Authors: Mueller, S.L., Peat, T.S.
PDB entry 7m24: Human carbonic anhydrase II in complex with (R)-rosiglitazone
Classification: LYASE/LYASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2021-03-16
Authors: Mueller, S.L., Peat, T.S.
PDB entry 7m25: Solution NMR Structure of PawL-Derived Peptide PLP-13
Classification: PLANT PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-03-16
Authors: Payne, C.D., Rosengren, K.J.
PDB entry 7m26: Human carbonic anhydrase II in complex with pioglitazone
Classification: LYASE/LYASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2021-03-16
Authors: Mueller, S.L., Peat, T.S.
PDB entry 7m27: Solution NMR Structure of PawL-Derived Peptide PLP-16
Classification: PLANT PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-03-16
Authors: Payne, C.D., Rosengren, K.J.
PDB entry 7m28: Solution NMR Structure of PawL-Derived Peptide PLP-22
Classification: PLANT PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-03-16
Authors: Payne, C.D., Rosengren, K.J.
PDB entry 7m29: Solution NMR Structure of PawL-Derived Peptide PLP-29
Classification: PLANT PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-03-16
Authors: Payne, C.D., Rosengren, K.J.
PDB entry 7m2a: Solution NMR Structure of PawL-Derived Peptide PLP-38
Classification: PLANT PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-03-16
Authors: Payne, C.D., Rosengren, K.J.
PDB entry 7m2b: Solution NMR Structure of PawL-Derived Peptide PLP-42
Classification: PLANT PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-03-16
Authors: Payne, C.D., Rosengren, K.J.
PDB entry 7m2c: Solution NMR Structure of PawL-Derived Peptide PLP-46
Classification: PLANT PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-03-16
Authors: Payne, C.D., Rosengren, K.J.
PDB entry 7m2d: Crystal Structure of Ebola zaire Envelope glycoprotein GP in complex with compound ARN0074953
Classification: VIRAL PROTEIN
Source organism: Zaire ebolavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-16
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7m2e: Crystal structure of BPTF bromodomain in complex with CB02-092
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-03-16
Authors: Nithianantham, S., Fischer, M.