LiteFold/PDB huggingface dataset:
PDB entry 9n7e: Eptesicus fuscus ACE2 peptidase domain bound to VsCoV-a7 RBD complex
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Eptesicus fuscus; Merbecovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-02-05
Authors: Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9n7f: HsSTING with cGAMP/C53/DCA
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-02-05
Authors: Gharpure, A., Ward, A.B.
PDB entry 9n7g: Crystal structure of S1007A in complex with FN3
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-02-05
Authors: Guo, Z., Alexandrov, K., Mutschler, R., Caputo, A., Cui, Z.
PDB entry 9n7k: Crystal structure of human anti-Pfs48/45 transmission-blocking antibody RUPA-71
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-02-06
Authors: Hailemariam, S., Ivanochko, D., Liu, X., Julien, J.P.
PDB entry 9n7m: Designed anti-OSM Fab
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-02-06
Authors: Kiefer, J.R., Alberstein, R.G., Hofmann, J.L., Watkins, A.M., Seeger, F., Dou, Y., Zhang, X.
PDB entry 9n7o: Designed anti-OSM Fab
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-02-06
Authors: Kiefer, J.R., Alberstein, R.G., Hofmann, J.L., Watkins, A.M., Seeger, F., Dou, Y., Zhang, X.
PDB entry 9n7q: H1 hemagglutinin (A/Michigan/45/2015) in complex with anchor-targeting Fab ST15
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-02-06
Authors: Brouwer, P.J.M., Loeffler, J.R., Ferguson, J.A., Rodriguez, A.J., Han, J., Ward, A.B.
PDB entry 9n7r: Crystal structure of HPK1 bound to N-(3,5-difluoro-4-{[3-(trifluoromethyl)-1H-pyrrolo[2,3-b]pyridin-4-yl]oxy}phenyl)-N'-[3-(morpholin-4-yl)propyl]urea (compound C6)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-02-06
Authors: Walters, B.T., Kiefer, J.R., Hsu, P.L., Wang, W., Wu, P.
PDB entry 9n7s: H1 hemagglutinin (A/California/04/2009) with E47K mutation in HA2 in complex with central stem-targeting Fab ST10
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-02-06
Authors: Brouwer, P.J.M., Loeffler, J.R., Ferguson, J.A., Rodriguez, A.J., Han, J., Ward, A.B.
PDB entry 9n7t: H5 hemagglutinin (A/Jiangsu/NJ210/2023) in complex with central stem-targeting Fab ST14
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-02-06
Authors: Brouwer, P.J.M., Loeffler, J.R., Ferguson, J.A., Rodriguez, A.J., Han, J., Ward, A.B.
PDB entry 9n7v: H1 hemagglutinin (A/Michigan/45/2015) in complex with anchor-targeting Fab ST4
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-02-06
Authors: Brouwer, P.J.M., Loeffler, J.R., Ferguson, J.A., Rodriguez, A.J., Han, J., Ward, A.B.
PDB entry 9n7y: BioSAS-TEVp (C151A, core) bound to TEV protease cleavage peptide
Classification: HYDROLASE
Source organism: Tobacco etch virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2025-02-07
Authors: Kaczmarski, J.A., Frkic, R.L., Jackson, C.J.
PDB entry 9n7z: Crystal structure of CT-SLiM-deleted human Drp1 GTPase domain-BSE fusion protein in the apo state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2025-02-07
Authors: Ramachandran, R., Vahedi-Faridi, A., Kowatz, T., Lodowski, D.
PDB entry 9n80: Crystal structure of human HRSP12
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-02-07
Authors: Suma, K., Mugridge, J.S.
PDB entry 9n81: A gap-filling complex with Pol mu engaged in the NHEJ Pathway
Classification: LIGASE/TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-07
Authors: Li, J., Liu, L., Gellert, M., Yang, W.
PDB entry 9n82: The ligation (AMP-Lys) complex in the NHEJ pathway
Classification: LIGASE/TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-07
Authors: Li, J., Liu, L., Gellert, M., Yang, W.
PDB entry 9n83: The ligation complex in the NHEJ pathway
Classification: LIGASE/TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-07
Authors: Li, J., Liu, L., Gellert, M., Yang, W.
PDB entry 9n85: Cryo-EM structure of human importin beta:Ran-GTP:RanBP1 trimeric complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-02-07
Authors: Ko, Y., Cingolani, G.
PDB entry 9n86: Cryo-EM structure of human importin beta:importin alpha (IBB) complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-07
Authors: Ko, Y., Cingolani, G., Suinn, S.
PDB entry 9n87: Cryo-EM structure of human importin beta: xIBB complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-07
Authors: Ko, Y., Li, J., Cingolani, G.
PDB entry 9n88: PROTAC-induced IRE1 ternary complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-02-07
Authors: Du, J., Johnson, M., Azumaya, C., Rohou, A., Hsu, P.L., Ashkenazi, A.
PDB entry 9n89: Crystal structure of 2A2 malarial antibody
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-02-07
Authors: Yoo, R., Julien, J.P.
PDB entry 9n8a: In situ structure of the sheathed FlaD flagellar filament in Vibrio cholerae
Classification: MOTOR PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-02-08
Authors: Wangbiao, G., Jun, L.
PDB entry 9n8b: In situ unsheathed flagellar filament of Vibrio cholerae resolved with helical reconstruction.
Classification: MOTOR PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2025-02-08
Authors: Wangbiao, G., Jun, L.
PDB entry 9n8e: Crystal structure of EBOV glycoprotein with modified HR1c (L579P) and HR2 stalk
Classification: VIRAL PROTEIN
Source organism: Ebola virus - Mayinga; Ebola virus - Mayinga, Zaire, 1976
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-02-08
Authors: Lee, Y.Z., Stanfield, R.L., Wilson, I.A., Zhu, J.
PDB entry 9n8f: Cryo-EM structure of SUDV glycoprotein with modified HR1c (L579P) and HR2 stalk bound to CA45 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Sudan ebolavirus (strain Human/Uganda/Gulu/2000)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-02-08
Authors: Lee, Y.Z., Ward, A.B., Zhu, J.
PDB entry 9n8g: In situ sheathed FlaA flagellar filament of Vibrio cholerae
Classification: MOTOR PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2025-02-08
Authors: Wangbiao, G., Jun, L.
PDB entry 9n8h: In situ sheathed flagellar filament of Vibrio cholerae resolved with helical reconstruction.
Classification: MOTOR PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2025-02-08
Authors: Wangbiao, G., Jun, L.
PDB entry 9n8i: Pfs230 domain 1 bound by RUPA-39 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-08
Authors: Ivanochko, D., Semesi, A., Julien, J.P.
PDB entry 9n8j: Stabilized tandem antigen chimera of Pfs230 and Pfs48/45 bound by potent mAbs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum; Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2025-02-08
Authors: Hailemariam, S., Ivanochko, D., Julien, J.P.
PDB entry 9n8m: In situ sheathed flagellar FlaC filament in Vibrio cholerae.
Classification: MOTOR PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-02-08
Authors: Wangbiao, G., Rajeev, K.
PDB entry 9n8n: Tandem antigen chimera of Pfs230 and Pfs48/45 bound by potent mAbs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2025-02-09
Authors: Ivanochko, D., Semesi, A., Julien, J.P.
PDB entry 9n8p: Subtomogram average of dimers of influenza HA trimers
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2025-02-09
Authors: Huang, Q.J., Song, K., Schiffer, C.A., Somasundaran, M.
PDB entry 9n8q: Crystal structure of Trastuzumab Fab with P151A
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-02-09
Authors: Choi, W.S., Tilegenova, C., Are, M., Zwolak, A., Shaffer, P., Sharma, S.
PDB entry 9n8r: Lipase 1 from Pseudomonas chlororaphis PA23
Classification: HYDROLASE
Source organism: Pseudomonas chlororaphis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-02-09
Authors: Royan, S., Newton, S., Ardevol, A., Caputo, A.T.
PDB entry 9n8w: Intermembrane lipid transport complex LetAB from Escherichia coli (Crosslinked, Composite model corresponding to Map 1)
Classification: LIPID TRANSPORT
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-10
Authors: Santarossa, C.C., Bhabha, G., Ekiert, D.C.
PDB entry 9n8x: Intermembrane lipid transport complex LetAB from Escherichia coli (Composite model corresponding to Map 2)
Classification: LIPID TRANSPORT
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-10
Authors: Santarossa, C.C., Bhabha, G., Ekiert, D.C.
PDB entry 9n92: High-resolution analysis of the human T-cell leukemia virus capsid protein reveals insights into immature particle morphology
Classification: VIRUS LIKE PARTICLE
Source organism: Human T-cell leukemia virus type I
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2025-02-10
Authors: Arndt, W.G., Ramezani, A., Talledge, N., Yu, G., Yang, H., Chen, B., Zhang, W., Mansky, L.M., Perilla, J.R.
PDB entry 9n93: Human TMEM63A mutant V53M lipid-open state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-02-10
Authors: Zheng, W., Fu, T.M., Holt, J.R.
PDB entry 9n94: Cryo-EM structure of FADD_DED filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-02-10
Authors: Fosuah, E., Lin, Q., Shen, Z., Fu, T.M.
PDB entry 9n95: Human TMEM63A mutant V53M closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-02-10
Authors: Zheng, W., Fu, T.M., Holt, J.R.
PDB entry 9n96: CRYO-EM STRUCTURE OF human U7 SM RING IN COMPLEX WITH SYMPLEKIN N-TERMINAL DOMAIN
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-02-10
Authors: Desotell, A., Tong, L.
PDB entry 9n98: Main Protease of HKU4 in complex with AVI-8122
Classification: VIRUS
Source organism: Tylonycteris bat coronavirus HKU4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-02-10
Authors: Chen, P., Lu, J., Lemieux, M.J.
PDB entry 9n99: SARS-CoV-2 Main protease in complex with AVI-8122
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-10
Authors: Chen, P., Lu, J., Lemieux, M.J.
PDB entry 9n9a: Crystal structure of Class-3 OPX WzaB from Myxococcus xanthus
Classification: TRANSLOCASE
Source organism: Myxococcus xanthus DZ2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-10
Authors: Mellouk, A., Calmettes, C.
PDB entry 9n9b: X-ray structure of SARS-CoV-2 main protease V186F covalently bound to inhibitor GRL-051-22 at 1.60 A
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-10
Authors: Beechboard, S.N., Meadows, M.S., Ghosh, A.K., Mesecar, A.D., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9n9c: Cryo-EM structure of the dCas12f-gRNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Flagellimonas taeanensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-02-10
Authors: Chang, L., Sternberg, S.H., Xiao, R., Hoffmann, F.T., Wiegand, T., Xie, D.
PDB entry 9n9d: MicroED structure of papain co-crystallized with E-64C
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.2 Å
Deposited: 2025-02-10
Authors: Vlahakis, N., Rodriguez, J.A.
PDB entry 9n9e: Cryo-EM structure of the SAH domain of Caenorhabditis elegans ICP-1 bound to the paclitaxel-stabilized microtubule
Classification: CELL CYCLE
Source organism: Caenorhabditis elegans; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-02-10
Authors: Funabiki, H., Niu, Y.
PDB entry 9n9f: Cryo-EM structure of the SAH domain of human INCENP bound to the paclitaxel-stabilized microtubule
Classification: CELL CYCLE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-02-10
Authors: Funabiki, H., Niu, Y.
PDB entry 9n9g: Cryo-EM structure of the human Hec1-Nuf2 dimer bound to the paclitaxel-stabilized microtubule
Classification: CELL CYCLE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-10
Authors: Funabiki, H., Niu, Y.
PDB entry 9n9h: Cryo-EM structure of the Xenopus laevis mitotic centromere-associated kinesin (MCAK) bound to the paclitaxel-stabilized microtubule
Classification: CELL CYCLE
Source organism: Sus scrofa; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-02-10
Authors: Funabiki, H., Niu, Y.
PDB entry 9n9i: Cryo-EM structure of the Xenopus laevis mitotic centromere-associated kinesin (MCAK) bound to the paclitaxel-stabilized microtubule
Classification: CELL CYCLE
Source organism: Sus scrofa; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-10
Authors: Funabiki, H., Niu, Y.
PDB entry 9n9j: Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-10
Authors: Yamsek, M., Jha, R., Keenan, R.J.
PDB entry 9n9l: An RORgt Inverse agonist for treatment of Psoriasis
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.637 Å
Deposited: 2025-02-11
Authors: Spurlino, J.C., Milligan, C.
PDB entry 9n9m: Cryo-EM structure of the dCas12f-gRNA-DNA complex (partial R-Loop)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Flagellimonas taeanensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-02-11
Authors: Chang, L., Sternberg, S.H., Xiao, R., Hoffmann, F.T., Wiegand, T., Xie, D.
PDB entry 9n9n: Crystal structure of KRAS(G12C) bound to the cyclic peptide UNC10415730A
Classification: ONCOPROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2025-02-11
Authors: Rossman, K.L.
PDB entry 9n9o: Cryo-EM structure of the dCas12f-gRNA-dsDNA complex (full R-Loop)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Flagellimonas taeanensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2025-02-11
Authors: Chang, L., Sternberg, S.H., Xiao, R., Hoffmann, F.T., Wiegand, T., Xie, D.
PDB entry 9n9p: Cryo-EM structure of the Fta RNAP complex
Classification: RNA BINDING PROTEIN
Source organism: Flagellimonas taeanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-02-11
Authors: Chang, L., Sternberg, S.H., Xiao, R., Hoffmann, F.T., Wiegand, T., Xie, D.
PDB entry 9n9q: Cryo-EM structure of the RNA-guided transcription complex
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Flagellimonas taeanensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-02-11
Authors: Chang, L., Sternberg, S.H., Xiao, R., Hoffmann, F.T., Wiegand, T., Xie, D.
PDB entry 9n9r: Model of APC/C-CDC20-UBE2C from H2A/H2B-bound complex
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-02-11
Authors: Skrajna, A., Bodrug, T., Brown, N.G., McGinty, R.K.
PDB entry 9n9s: Model of APC/C-CDC20-UBE2C from H3/H4-bound complex
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-02-11
Authors: Skrajna, A., Bodrug, T., Brown, N.G., McGinty, R.K.
PDB entry 9n9t: Crystal structure of Main protease of PEDV in complex with AVI8122
Classification: VIRAL PROTEIN
Source organism: Porcine epidemic diarrhea virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-11
Authors: Chen, P., Lu, J., Lemieux, M.J.
PDB entry 9n9u: Camel alphacoronavirus (229E-like) Nsp5 in complex with AVI8122
Classification: VIRAL PROTEIN
Source organism: Camel alphacoronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-11
Authors: Chen, P., Lu, J., Lemieux, M.J.
PDB entry 9n9v: Main protease of MERS in complex with AVI8122
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-02-11
Authors: Chen, P., Lu, J., Lemieux, M.J.
PDB entry 9n9w: Cryo-EM structure of AMPPNP bound human phosphoribosylformylglycinamidine synthase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-02-11
Authors: Sharma, N., French, J.B.
PDB entry 9n9x: Structure of HPK1 with C5 bound at its active site
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-11
Authors: Kiefer, J.R., Wang, W., Wu, P., Walters, B.T., Dou, Y.
PDB entry 9n9y: Crystal structure of truncated USP1:UAF1 in complex with compound 18
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2025-02-11
Authors: Whittington, D.A.
PDB entry 9na0: Main protease of HKU8 in complex with AVI8122
Classification: VIRAL PROTEIN
Source organism: Miniopterus bat coronavirus HKU8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-11
Authors: Chen, P., Lu, J., Lemieux, M.J.
PDB entry 9na1: RNA scaffold
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-02-11
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9na2: IRAK4 in Complex with Compound 9
Classification: IMMUNE SYSTEM,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-02-11
Authors: Ferrao, R., Lansdon, E.B.
PDB entry 9na3: IRAK4 in Complex with Compound 15
Classification: IMMUNE SYSTEM,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-11
Authors: Ferrao, R., Lansdon, E.B.
PDB entry 9na4: IRAK4 in Complex with Compound 18
Classification: IMMUNE SYSTEM,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-02-11
Authors: Ferrao, R., Lansdon, E.B.
PDB entry 9na5: IRAK4 in Complex with Compound 24
Classification: IMMUNE SYSTEM,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-02-11
Authors: Ferrao, R., Lansdon, E.B.
PDB entry 9na6: IRAK4 in Complex with Compound 34
Classification: IMMUNE SYSTEM,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-02-11
Authors: Ferrao, R., Lansdon, E.B.
PDB entry 9na7: RNA scaffold
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2025-02-11
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9na8: Augmin1345 Extended-body
Classification: PLANT PROTEIN
Source organism: Aequorea victoria; Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-11
Authors: Ashaduzzaman, M., Al-Bassam, J., Taheri, A.
PDB entry 9na9: Augmin1345-Extended-Tripod
Classification: PLANT PROTEIN
Source organism: Aequorea victoria; Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2025-02-11
Authors: Ashaduzzaman, M., Al-Bassam, J., Taheri, A.
PDB entry 9naa: Unusual structure of a bacteriophytochrome fragment derived from full length SaBphP2
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-11
Authors: Schmidt, M., Prabin, K.
PDB entry 9nab: Cryo-EM structure of the alpha5beta1 integrin headpiece with OS2966 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-02-11
Authors: Wang, L., Zhang, C.
PDB entry 9nac: Structure of HPK1 with C4 bound at its active site
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-02-11
Authors: Kiefer, J.R., Wang, W., Wu, P., Walters, B.T., Dou, Y.
PDB entry 9nad: Human GSTO1-1 complexed with C5-1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.994 Å
Deposited: 2025-02-11
Authors: Oakley, A.J.
PDB entry 9nae: MicroED structure of papain co-crystallized with E-64
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.3 Å
Deposited: 2025-02-11
Authors: Vlahakis, N., Rodriguez, J.A.
PDB entry 9nag: MicroED structure of the apo-form of papain
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2025-02-12
Authors: Vlahakis, N., Rodriguez, J.A.
PDB entry 9nai: LuIII VLP - Glycan [s(Lex)2]
Classification: VIRUS
Source organism: LuIII virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-02-12
Authors: Busuttil, K.B., Bennett, A.B.
PDB entry 9naj: LuIII VLP - Glycan [3's(LN)3]
Classification: VIRUS
Source organism: LuIII virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-02-12
Authors: Busuttil, K.B., Bennett, A.B.
PDB entry 9nak: RNA scaffold attached to tRNA
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2025-02-12
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9nal: Cryo-EM structure of ternary complex of human phosphoribosylglycinamidine synthase with the intermediate (iminophosphate) and ADP bound at the synthase site.
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2025-02-12
Authors: Sharma, N., French, J.B.
PDB entry 9nam: RNA scaffold attached to Mango in the absence of ligand
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-02-12
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9nao: MicroED structure of papain complexed with natural product E64-A65
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2025-02-12
Authors: Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9nap: RNA scaffold attached to Mango in the presence of TO1-biotin
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-02-12
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9naq: Cryo-EM structure of 110_C4 Fab in complex with CIDRa1.7 PfEMP1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-12
Authors: Raghavan, S.S.R., Ward, A.B.
PDB entry 9nar: MicroED structure of papain microcrystals soaked with E-64 for 10 minutes
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2025-02-12
Authors: Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9nas: RNA scaffold attached to disordered U1A stem loop
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-02-12
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9nat: X-ray diffraction structure of papain co-crystallized with leupeptin
Classification: HYDROLASE
Source organism: Carica papaya; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-12
Authors: Vlahakis, N.W., Flowers, C.W., Rodriguez, J.A.
PDB entry 9nau: CryoEM structure of capsid from human astrovirus 1 in complex with human neonatal Fc receptor
Classification: VIRUS
Source organism: Human astrovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-02-12
Authors: Hall, P.D., Nelson, C.A., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9nav: CryoEM structure of human astrovirus 1 spike in complex with human neonatal Fc receptor
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human astrovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2025-02-12
Authors: Hall, P.D., Nelson, C.A., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9naw: H-1 Parvovirus VLP
Classification: VIRUS
Source organism: H-1 parvovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-02-13
Authors: Busuttil, K.B., Bennett, A.B., McKenna, R.
PDB entry 9nax: MicroED structure of the papain-E-64 complex from microcrystals soaked with crude biosynthetic reaction mixture
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.3 Å
Deposited: 2025-02-13
Authors: Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9nay: MicroED structure of papain complexed with natural product E-64-A65 from microcrystals soaked in crude biosynthetic reaction mixture
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2025-02-13
Authors: Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9naz: Structure of SARS-CoV-2 NSP14 bound to N-((4-vinylthiazol-2-yl)methyl)-1H-pyrazole-3-carboxamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-02-13
Authors: Coker, J.A., Sun, R., Polzer, P.M., Jung, J., Stauffer, S.R.
PDB entry 9nb0: Isoreticular, Porous co-crystal of Replication Initiator Protein REPE54 and asymmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and additional expansion sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-02-13
Authors: Shields, E.T., Snow, C.D.
PDB entry 9nb1: CRYO-EM STRUCTURE OF human U7 SNRNP WITH MUTANT LSM11 that disrupts contacts with CPSF73
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; Trichoplusia ni; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2025-02-13
Authors: Desotell, A., Tong, L.
PDB entry 9nb2: X-ray diffraction structure of papain soaked with E-64
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-13
Authors: Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9nb3: Cryo-EM structure of quaternary complex of human phosphoribosylglycinamidine synthase with thioester intermediate bound (at glutaminase site) and AMPPNP and FGAR (at synthase site).
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-02-13
Authors: Sharma, N., French, J.B.
PDB entry 9nb4: Serial synchrotron X-ray diffraction structure of papain microcrystals soaked with natural product E-64-A65
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-13
Authors: Vlahakis, N.W., Summers, J.A., Wakatsuki, S., Rodriguez, J.A.
PDB entry 9nb5: Cryo-EM structure of the autoinhibitory CD163 trimer
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-13
Authors: Huang, C.-S., White, J.B.R., Degtjarik, O., Mosyak, L.
PDB entry 9nb6: Cryo-EM structure of the CD163/Hp(1-1)Hb complex
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-13
Authors: Huang, C.-S., White, J.B.R., Degtjarik, O., Mosyak, L.
PDB entry 9nb7: Serial synchrotron X-ray diffraction structure of papain microcrystals soaked with natural product E405
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-13
Authors: Vlahakis, N.W., Summers, J.A., Wakatsuki, S., Rodriguez, J.A.
PDB entry 9nb8: Cryo-EM structure of the CD163/HpSPHb complex
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-02-13
Authors: Huang, C.-S., White, J.B.R., Degtjarik, O., Mosyak, L.
PDB entry 9nb9: Viral protein DP71L in complex with phosphorylated eIF2alpha (NTD) and protein phosphatase 1A (D64A), stabilized by G-actin/DNAseI
Classification: TRANSLATION
Source organism: African swine fever virus; Bos taurus; Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-02-13
Authors: Reineke, L.C., Dalwadi, U., Croll, T., Arthur, C., Lee, D.J., Frost, A., Costa-Mattioli, M.
PDB entry 9nba: Augmin/V junction(open)
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.6 Å
Deposited: 2025-02-13
Authors: Ashaduzzaman, M., Al-Bassam, J., Taheri, A.
PDB entry 9nbb: Augmin/V junction(closed)
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2025-02-13
Authors: Ashaduzzaman, M., Al-Bassam, J., Taheri, A.
PDB entry 9nbc: RNA scaffold attached to 8-oxoguanine riboswitch aptamer
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-02-13
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9nbd: AUGMIN Dimer
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.1 Å
Deposited: 2025-02-13
Authors: Ashaduzzaman, M., Al-Bassam, J., Taheri, A.
PDB entry 9nbf: Serial synchrotron X-ray diffraction structure of papain microcrystals soaked with E-64
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-13
Authors: Vlahakis, N.W., Summers, J.A., Wakatsuki, S., Rodriguez, J.A.
PDB entry 9nbg: H-1 Parvovirus VLP - Glycan [s(Lex)2]
Classification: VIRUS LIKE PARTICLE
Source organism: H-1 parvovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2025-02-13
Authors: Busuttil, K.B., Bennett, A.B., McKenna, R.
PDB entry 9nbh: RNA scaffold attached to 8-oxoguanine riboswitch aptamer core only
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2025-02-13
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9nbj: Serial synchrotron X-ray diffraction structure of papain microcrystals soaked with E-64C
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-13
Authors: Vlahakis, N.W., Summers, J.A., Wakatsuki, S., Rodriguez, J.A.
PDB entry 9nbk: Serial synchrotron X-ray diffraction structure of papain microcrystals soaked with E-64D
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-13
Authors: Vlahakis, N.W., Summers, J.A., Wakatsuki, S., Rodriguez, J.A.
PDB entry 9nbl: Open conformation of ArsA from L. ferriphilum in complex with MgADP determined in the presence of arsenite
Classification: HYDROLASE
Source organism: Leptospirillum ferriphilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-14
Authors: Mahajan, S., Rees, D.C., Clemons, W.M.
PDB entry 9nbm: Open conformation of ArsA from L. ferriphilum in complex with MgADP determined in absence of arsenite
Classification: HYDROLASE
Source organism: Leptospirillum ferriphilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-14
Authors: Mahajan, S., Rees, D.C., Clemons, W.M.
PDB entry 9nbn: Serial synchrotron X-ray diffraction structure of papain microcrystals soaked with a mixture of E-64, E-64C, and E-64D
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-14
Authors: Vlahakis, N.W., Summers, J.A., Wakatsuki, S., Rodriguez, J.A.
PDB entry 9nbo: Closed conformation of ArsA from L. ferriphilum in complex with MgATP and arsenite
Classification: HYDROLASE
Source organism: Leptospirillum ferriphilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-14
Authors: Mahajan, S., Li, Y.E., Rees, D.C., Clemons, W.M.
PDB entry 9nbp: MicroED structure of the papain-E-64 complex from microcrystals mixed on-grid with microarrayed ligand
Classification: HYDROLASE/INHIBITOR
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.8 Å
Deposited: 2025-02-14
Authors: Vlahakis, N., Rodriguez, J.A.
PDB entry 9nbq: MicroED structure of papain co-crystallized with E-64D
Classification: HYDROLASE/INHIBITOR
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.3 Å
Deposited: 2025-02-14
Authors: Vlahakis, N., Rodriguez, J.A.
PDB entry 9nbs: Structure of HPK1 with compound R2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-14
Authors: Kiefer, J.R., Walters, B.T., Wang, W., Wu, P., Duo, Y.
PDB entry 9nbt: AMC008 v4.2 SOSIP Env trimer in complex with VRC01 and 35O22 Fabs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-02-14
Authors: Cui, J., Du, J., Lin, Z., Pallesen, J.
PDB entry 9nbu: [7,7,5-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (7,7,5) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.79 Å
Deposited: 2025-02-14
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nbv: [5,7,8-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (5,7,8) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.97 Å
Deposited: 2025-02-14
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nbw: Closed conformation of ArsA from L. ferriphilum in complex with MgATP and arsenite at 1.5 minute time point
Classification: HYDROLASE
Source organism: Leptospirillum ferriphilum ML-04
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-14
Authors: Mahajan, S., Rees, D.C., Clemons, W.M.
PDB entry 9nbx: Crystal structure of PAK1 bound to C2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-02-14
Authors: Wang, W., Oh, A., Kiefer, J.R., Hsu, P.L.
PDB entry 9nby: AMC008 v4.2 SOSIP Env trimer in complex with PGT121, VRC01 and 3BC315 Fabs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-02-14
Authors: Cui, J., Du, J., Lin, Z., Pallesen, J.
PDB entry 9nbz: [5,7,7-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (5,7,7) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.98 Å
Deposited: 2025-02-14
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nc0: AMC008 v4.2 SOSIP Env trimer in complex with b12 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2025-02-14
Authors: Cui, J., Du, J., Lin, Z., Pallesen, J.
PDB entry 9nc1: MicroED structure of papain-E-64 complex from microcrystals soaked with protease inhibitor cocktail
Classification: HYDROLASE/INHIBITOR
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.4 Å
Deposited: 2025-02-14
Authors: Vlahakis, N., Rodriguez, J.A.
PDB entry 9nc2: Structure of HPK1 with compound C3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-14
Authors: Kiefer, J.R., Walters, B.T., Wang, W., Wu, P., Duo, Y.
PDB entry 9nc3: AMC008 v4.2 SOSIP Env trimer in complex with b12 and 3BC315 Fabs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2025-02-14
Authors: Cui, J., Du, J., Lin, Z., Pallesen, J.
PDB entry 9nc4: [2,8,9-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (2,8,9) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.29 Å
Deposited: 2025-02-14
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nc5: [4,14,11-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,14,11) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.37 Å
Deposited: 2025-02-14
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nc6: AMC008 v4.2 SOSIP Env trimer in complex with two 3BC315 Fabs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-02-14
Authors: Cui, J., Du, J., Lin, Z., Pallesen, J.
PDB entry 9nc7: [0,14,15-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,14,15) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.41 Å
Deposited: 2025-02-14
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nc8: AMC008 v4.2 SOSIP Env trimer in complex with one 3BC315 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2025-02-14
Authors: Cui, J., Du, J., Lin, Z., Pallesen, J.
PDB entry 9nc9: Helical assembly of AVAST5 filament
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2025-02-15
Authors: Shen, Z., Xie, J., Fu, T.M.
PDB entry 9nca: MicroED structure of microcrystals soaked with a mixture of E-64, E-64C, and E-64D
Classification: HYDROLASE/INHIBITOR
Source organism: Carica papaya
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2025-02-15
Authors: Vlahakis, N., Rodriguez, J.A.
PDB entry 9ncc: Serial synchrotron X-ray diffraction structure of the apo form of papain
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-15
Authors: Vlahakis, N.W., Summers, J.A., Wakatsuki, S., Rodriguez, J.A.
PDB entry 9ncd: Crystal structure of the peanut allergen Ara h 9 with bound Fab IGX-3103 and antiFab nanobody
Classification: ALLERGEN
Source organism: Arachis hypogaea; Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-15
Authors: Pedersen, L.C., Mueller, G.A.
PDB entry 9nce: Oxidized Treponema pallidum thioredoxin strain Nichols
Classification: STRUCTURAL PROTEIN
Source organism: Treponema pallidum subsp. pallidum str. Nichols
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-02-16
Authors: Carbone, V., Ronimus, R.S., Sutherland-Smith, A.J.
PDB entry 9ncf: Icosahedral capsid assembly of phage JohannRWettstein (Bas63)
Classification: VIRAL PROTEIN
Source organism: Escherichia phage JohannRWettstein
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-02-16
Authors: Hodgkinson-Bean, J.
PDB entry 9ncg: Marpharsen treated Treponema pallidum thioredoxin strain Nichols
Classification: STRUCTURAL PROTEIN
Source organism: Treponema pallidum subsp. pallidum str. Nichols
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2025-02-16
Authors: Carbone, V., Ronimus, R.S., Sutherland-Smith, A.J.
PDB entry 9nch: [6,7,6,P-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (6,7,6) base pairs, 2 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2025-02-16
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nci: [5,7,7,P-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (5,7,7) base pairs, 2 nt sticky ends, and 5' phosphates
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.71 Å
Deposited: 2025-02-16
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ncj: Coiled-coil bundlemer nanotube, R3K (15 proto-filaments)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2025-02-16
Authors: Das, A., Conticello, V.
PDB entry 9nck: Nanotube of computationally designed peptide assembly R3K (16 protofilament)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2025-02-16
Authors: Das, A., Conticello, V.
PDB entry 9ncl: Arsenic treated Treponema pallidum thioredoxin strain Nichols
Classification: STRUCTURAL PROTEIN
Source organism: Treponema pallidum subsp. pallidum str. Nichols
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-16
Authors: Carbone, V., Sutherland-Smith, A.J., Ronimus, R.S.
PDB entry 9ncm: [4,7,9-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,7,9) base pairs and 1 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.15 Å
Deposited: 2025-02-16
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ncn: IN-ML-15 bound to IRzip
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-02-16
Authors: Kirk, N.S.
PDB entry 9nco: IN-ML-15 bound to IGF1Rzip
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-16
Authors: Kirk, N.S.
PDB entry 9ncp: [3,8,8-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (3,8,8) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.59 Å
Deposited: 2025-02-17
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9ncq: Cryo-EM structure of Fas-FADD complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-02-17
Authors: Fosuah, E., Lin, Q., Shen, Z., Fu, T.M.
PDB entry 9ncr: Isoreticular, Porous co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and additional G/C rich expansion sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2025-02-17
Authors: Shields, E.T., Snow, C.D., Slaughter, C.K.
PDB entry 9ncs: RNase A in complex with Uridine Vanadate and decavanadates
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-02-17
Authors: Gutierrez, C.S., Lim, D.C., Silkenath, B., Kojasoy, V., Raines, R.T.
PDB entry 9nct: Crystal Structure of WDR5 in complex with Triazole-Based Inhibitors
Classification: STRUCTURAL PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-02-17
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9ncu: NitrOFF1 ""OFF"" State
Classification: FLUORESCENT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2025-02-17
Authors: Smailys, J., Zhang, Y.
PDB entry 9ncv: Crystal Structure of WDR5 in complex with Triazole-Based Inhibitors
Classification: STRUCTURAL PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-02-17
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9ncw: Crystal Structure of WDR5 in complex with Triazole-Based Inhibitors
Classification: STRUCTURAL PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-02-17
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 9ncx: NitrOFF1 ""ON"" State
Classification: FLUORESCENT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-02-17
Authors: Smailys, J., Zhang, Y.
PDB entry 9ncy: Fab1392 in complex with the C-terminal alpha-TSR domain of the P. falciparum circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-02-17
Authors: Moskovitz, R., Wilson, I.A.
PDB entry 9ncz: Crystal structure of human AlkBH3 in complex with manganese and 2-oxoglutarate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-02-17
Authors: Suma, K., Mugridge, J.S.