LiteFold/PDB huggingface dataset:
PDB entry 9bzy: UIC-1 peptide bound with m-xylene
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L.
PDB entry 9bzz: UIC-1 peptide bound with ethylbenzene
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.81 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L.
PDB entry 9c00: UIC-1 soaked with R/S 1-chloroethylbenzene
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L., Nguyen, A.I.
PDB entry 9c01: UIC-1 bound to phenol
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.83 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L.
PDB entry 9c02: UIC-1 B7M soaked with equimolar ortho-, meta-, and para-xylene
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L.
PDB entry 9c03: UIC-1-A4S/B7M bound with xylenes
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.93 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L.
PDB entry 9c04: UIC-1 soaked in equimolar toluene, para-xylene, and ethylbenzene
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.94 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L.
PDB entry 9c05: UIC-1 soaked in equimolar benzene, toluene, isopropylbenzene, and ortho-xylene
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L.
PDB entry 9c06: UIC-1 A4S/B5(4-Cl)F soaked in equimolar ortho-, meta-, and para-xylene
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.85 Å
Deposited: 2024-05-24
Authors: Heinz-Kunert, S.L., Nguyen, A.I.
PDB entry 9c07: Structure of K2P13.1 (THIK1) S136P in detergent
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-05-24
Authors: Roy-Chowdhury, S., Adberemane-Ali, F., Minor, D.L.
PDB entry 9c08: Structure of Sialyl transferase from Pasturella Multocida
Classification: TRANSFERASE
Source organism: Pasteurella
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-05-24
Authors: Subramanian, R., Dhanabalan, K.
PDB entry 9c09: Structure of K2P13.1 (THIK1) S136P in lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2024-05-24
Authors: Roy-Chowdhury, S., Adberemane-Ali, F., Minor, D.L.
PDB entry 9c0a: Sigma class glutathione transferase from Taenia solium 1.75 A
Classification: IMMUNE SYSTEM
Source organism: Taenia solium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-05-24
Authors: Miranda-Blancas, R., Cardona-Echavarria, M.C., Garcia-Gutierrez, P., Sanchez-Juarez, C., Flores-Lopez, R., Zubillaga, R., Rodriguez-Lima, O., Sanchez-Perez, L.C., Landa, A., Rudino-Pinera, E.
PDB entry 9c0b: E.coli GroEL + PBZ1587 inhibitor
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-05-25
Authors: Watson, E.R., Lander, G.C.
PDB entry 9c0c: E.coli GroEL apoenzyme
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-05-25
Authors: Watson, E.R., Lander, G.C.
PDB entry 9c0d: E.Faecium GroEL
Classification: CHAPERONE
Source organism: Enterococcus faecium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-05-25
Authors: Watson, E.R., Lander, G.C.
PDB entry 9c0e: Phosphorylated human NKCC1_K289NA492E in complex with furosemide
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-05-25
Authors: Zhao, Y.X., Cao, E.H.
PDB entry 9c0f: piggyBat transposase protein-DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Myotis lucifugus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-05-25
Authors: Lannes, L., Hickman, A.B., Dyda, F.
PDB entry 9c0g: Phosphorylated human NKCC1 in complex with torsemide
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-05-25
Authors: Zhao, Y.X., Cao, E.H.
PDB entry 9c0h: Phosphorylated human NKCC1 in complex with bumetanide
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-05-25
Authors: Zhao, Y.X., Cao, E.H.
PDB entry 9c0i: Structure of the DRT2 reverse transcriptase in complex with its non-coding RNA
Classification: TRANSFERASE/DNA/RNA
Source organism: Klebsiella pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-05-25
Authors: Wilkinson, M.E., Zhang, F.
PDB entry 9c0j: Structure of the elongating DRT2 reverse transcriptase in complex with its non-coding RNA and dNTPs
Classification: TRANSFERASE/DNA/RNA
Source organism: Klebsiella pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-05-25
Authors: Wilkinson, M.E., Zhang, F.
PDB entry 9c0k: Cryo-EM structure of glucagon-like peptide-1 receptor (GLP-1R)-Gs complex with Exendin-phe1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2024-05-25
Authors: Zhang, X., Johnson, R., Belousoff, M.J., Danev, R., Sexton, P.M., Wootten, D.
PDB entry 9c0l: FphH, Staphylococcus aureus fluorophosphonate-binding serine hydrolases H, apo crystal form 2
Classification: HYDROLASE
Source organism: Staphylococcus aureus USA300-CA-263
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2024-05-26
Authors: Fellner, M.
PDB entry 9c0m: FphH, Staphylococcus aureus fluorophosphonate-binding serine hydrolases H, apo form 2 at room temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus USA300-CA-263
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-05-26
Authors: Fellner, M.
PDB entry 9c0n: FphI, Staphylococcus aureus fluorophosphonate-binding serine hydrolases I, apo form at room temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus USA300-CA-263
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-05-26
Authors: Fellner, M., Randall, G.T.
PDB entry 9c0o: Crystal structure of DmCfp1 PHD finger bound to H3K4me3
Classification: METAL BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2024-05-27
Authors: Gregoire, S., Couture, J.F.
PDB entry 9c0p: M. tuberculosis PKS13 acyltransferase (AT) domain in complex with SuFEx inhibitor CEC215
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-05-27
Authors: Krieger, I.V., Tang, S., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 9c0q: Carbon monoxide dehydrogenase (CODH) from Methanosarcina thermophila, specimen prepared on blot plunger
Classification: OXIDOREDUCTASE
Source organism: Methanosarcina thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-05-27
Authors: Biester, A., Drennan, C.L.
PDB entry 9c0r: Carbon monoxide dehydrogenase (CODH) from Methanosarcina thermophila, specimen prepared on chameleon plunger
Classification: OXIDOREDUCTASE
Source organism: Methanosarcina thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-05-27
Authors: Biester, A., Drennan, C.L.
PDB entry 9c0s: Carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) pentamer from Methanosarcina thermophila
Classification: OXIDOREDUCTASE
Source organism: Methanosarcina thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-05-27
Authors: Biester, A., Drennan, C.L.
PDB entry 9c0t: Carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) hexamer from Methanosarcina thermophila
Classification: OXIDOREDUCTASE
Source organism: Methanosarcina thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-05-27
Authors: Biester, A., Drennan, C.L.
PDB entry 9c0u: Crystal structure of chimeric hemagglutinin cH5/1 in complex with broad protective antibody 31.b.09
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.59 Å
Deposited: 2024-05-27
Authors: Nguyen, T.K.Y., Zhu, X., Wilson, I.A.
PDB entry 9c0v: Crystal structure of chimeric hemagglutinin cH5/1 in complex with broad protective antibody 3E1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2024-05-27
Authors: Nguyen, T.K.Y., Wilson, I.A.
PDB entry 9c0w: AzrC from Bacillus pacificus ROC1 bound to malachite green
Classification: FLAVOPROTEIN
Source organism: Bacillus pacificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-05-28
Authors: Breeze, C.W., Jackson, C.J., Frkic, R.L.
PDB entry 9c0x: Crystal structure of chimeric hemagglutinin cH11/1 in complex with broad protective antibody 31.b.09
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.35 Å
Deposited: 2024-05-28
Authors: Nguyen, T.K.Y., Zhu, X., Wilson, I.A.
PDB entry 9c0y: Clathrin terminal domain complexed with Pitstop 2c
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-05-28
Authors: Bulut, H., Horatscheck, A., Krauss, M., Santos, K.F., McCluskey, A., Wahl, C.W., Nazare, M., Haucke, V.
PDB entry 9c0z: Clathrin terminal domain complexed with pitstop 2d
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2024-05-28
Authors: Bulut, H., Horatscheck, A., Krauss, M., Santos, K.F., McCluskey, A., Wahl, C.W., Nazare, M., Haucke, V.
PDB entry 9c10: AMG 193, a clinical stage MTA-cooperative PRMT5 inhibitor, drives anti-tumor activity preclinically and in patients with MTAP-deleted cancers
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-05-28
Authors: Ghimire-Rijal, S., Mukund, S.
PDB entry 9c11: Crystal structure of Staphylococcal nuclease variant Delta+PHS L36R at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-05-28
Authors: Zhang, Y., Schlessman, J.L., Siegler, M.A., Garcia-Moreno E., B.
PDB entry 9c12: Leukotriene C4-bound Multidrug Resistance-associated Protein 2 (MRP2)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-05-28
Authors: Koide, E., Chen, J.
PDB entry 9c13: XMAP215 TOG5 interaction with GMPCPP tubulin lattice
Classification: CELL CYCLE
Source organism: Bos taurus; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-05-28
Authors: McManus, C.T., Travis, S.M., Jeffrey, P.D., Zhang, R., Petry, S.
PDB entry 9c14: Structure of the CopC-like domain of YcnJ
Classification: METAL BINDING PROTEIN
Source organism: Bacillus subtilis (strain 168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-05-28
Authors: de Oliveira Silva, Y.R., Zheng, D., Fisher, O.S.
PDB entry 9c15: Crystal structure of the KRAS-p110alpha complex with molecular glue D927
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2024-05-28
Authors: Yan, W., Czyzyk, D.J., Simanshu, D.K.
PDB entry 9c16: Human biliverdin IX beta reductase in complex with NADP and BCT002029
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2024-05-28
Authors: Kreitler, D.F.
PDB entry 9c17: Human biliverdin IX beta reductase in complex with NADP and BCT001028
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2024-05-28
Authors: Kreitler, D.F.
PDB entry 9c18: Human biliverdin IX beta reductase in complex with NADP in space group P1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-05-28
Authors: Kreitler, D.F.
PDB entry 9c19: Structure of human LIAS
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-05-28
Authors: Esakova, O.A., Warui, D.M., Neti, S.S., Alumasa, J.N., Booker, S.J.
PDB entry 9c1a: Crystal structure of GDP-bound human M-RAS protein in crystal form I
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-05-28
Authors: Bester, S.M., Abrahamsen, R., Samora, L.R., Wu, W.-I., Mou, T.-C.
PDB entry 9c1b: Crystal structure of GDP-bound human M-RAS protein in crystal form II
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-05-28
Authors: Bester, S.M., Abrahamsen, R., Samora, L.R., Wu, W.-I., Mou, T.-C.
PDB entry 9c1c: Mycobacterium tuberculosis PKS13 acyltransferase serine converted to beta-lactam form by CEC215 via SuFEx reaction
Classification: ANTIBIOTIC
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2024-05-29
Authors: Tang, S., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 9c1d: Mycobaterium tuberculosis Pks13 acyltransferase incubated with DMSO
Classification: ANTIBIOTIC
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-05-29
Authors: Tang, S., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 9c1e: Mink RyR3 in closed conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Neogale vison
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-05-29
Authors: Chen, Y.S., Van Petegem, F.
PDB entry 9c1f: Mink RyR3 in open conformation bound to Ca2+/ATP/caffeine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Neogale vison
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-05-29
Authors: Chen, Y.S., Van Petegem, F.
PDB entry 9c1g: Rhesus rotavirus (consensus structure at 2.36 Angstrom resolution)
Classification: VIRUS
Source organism: Simian rotavirus A strain RRV
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2024-05-29
Authors: Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
PDB entry 9c1h: Rhesus rotavirus (upright structure at 2.88 Angstrom resolution)
Classification: VIRAL PROTEIN
Source organism: Simian rotavirus A strain RRV
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-05-29
Authors: Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
PDB entry 9c1i: Rhesus rotavirus (VP5*/VP8* structure at 3.52 Angstrom resolution)
Classification: VIRAL PROTEIN
Source organism: Simian rotavirus A strain RRV
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-05-29
Authors: Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
PDB entry 9c1j: Rhesus rotavirus (reversed structure at 2.72 Angstrom resolution)
Classification: VIRAL PROTEIN
Source organism: Simian rotavirus A strain RRV
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2024-05-29
Authors: Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
PDB entry 9c1k: Rhesus rotavirus (empty structure at 2.68 Angstrom resolution)
Classification: VIRAL PROTEIN
Source organism: Simian rotavirus A strain RRV
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-05-29
Authors: Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
PDB entry 9c1l: Rhesus rotavirus (VP1 structure at 2.65 Angstrom resolution)
Classification: VIRAL PROTEIN
Source organism: Simian rotavirus A strain RRV
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-05-29
Authors: Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.
PDB entry 9c1m: HerA-DUF assembly 1
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus sp. HMF5848
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-05-29
Authors: Rish, A.D., Fosuah, E., Fu, T.M.
PDB entry 9c1n: HerA-DUF4297 assembly 2
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus sp. HMF5848
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-05-29
Authors: Rish, A.D., Fosuah, E., Fu, T.M.
PDB entry 9c1o: Apo HerA of HerA-Duf4297 supramolecular complex in anti-phage defense
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus sp. HMF5848
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-05-29
Authors: Rish, A., Fosuah, E., Fu, T.M.
PDB entry 9c1p: Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-05-29
Authors: Wu, C., Skiniotis, G.
PDB entry 9c1q: Crystal structure of the WDR domain of human DCAF1 in complex with OICR-39512 compound
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-05-29
Authors: kimani, S., Dong, A., Li, Y., Seitova, A., Al-awar, R., Wilson, B., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L.
PDB entry 9c1r: Crystal structure of mutant cMET D1228N kinase domain in complex with inhibitor compound 13
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-05-29
Authors: Simpson, H., Wu, W.-I., Mou, T.-C.
PDB entry 9c1s: Fab F946 in complex with OspC type A
Classification: IMMUNE SYSTEM/ANTIGEN
Source organism: Borreliella burgdorferi; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-05-29
Authors: Rudolph, M.J., Mantis, N.
PDB entry 9c1t: Crystal structure of integrin beta-3 tail bound to the FERM-folded talin head domain with a D397R mutation
Classification: CELL ADHESION
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-05-29
Authors: Wu, J., Gao, T.
PDB entry 9c1u: Cryo-EM Structure of a Tm1C Fibril
Classification: PROTEIN FIBRIL
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2024-05-29
Authors: Fonda, B.D., Kato, M., Li, Y., Murray, D.T.
PDB entry 9c1v: M. tuberculosis PKS13 acyltransferase (AT) domain in complex with SuFEx inhibitor CMX410
Classification: TRANSFERASE/TRANSFERSE INHIBITOR
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2024-05-29
Authors: Krieger, I.V., Tang, S., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 9c1w: Structure of AKT2 with compound 3
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-05-29
Authors: Craven, G.B., Ma, X., Taunton, J.
PDB entry 9c1x: Apo DUF4297 12-mer
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus sp. HMF5848
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-05-29
Authors: Rish, A.D., Fosuah, E., Fu, T.M.
PDB entry 9c1y: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain in complex with 7-((3-(((4-(6-aminopyridin-2-yl)butyl)amino)methyl)phenoxy)methyl)quinolin-2-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-05-29
Authors: Li, H., Poulos, T.L.
PDB entry 9c1z: Structure of human endothelial nitric oxide synthase heme domain in complex with 7-((3-(((4-(6-aminopyridin-2-yl)butyl)amino)methyl)phenoxy)methyl)quinolin-2-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-05-30
Authors: Li, H., Poulos, T.L.
PDB entry 9c20: The Sialidase NanJ in complex with Neu5,9Ac
Classification: HYDROLASE
Source organism: Clostridium perfringens ATCC 13124
Experimental method: X-RAY DIFFRACTION
Resolution: 2.699 Å
Deposited: 2024-05-30
Authors: Medley, B.J., Low, K.E., Garber, J.M., Gray, T.E., Leeann, L.L., Fordwour, O.B., Inglis, G.D., Boons, G.J., Zandberg, W.F., Abbott, W., Boraston, A.
PDB entry 9c21: Structure of endogenous Actin filament from rat model of Alzheimer's disease
Classification: STRUCTURAL PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-05-30
Authors: Khalili Samani, E., Keszei, A.F.A., Mazhab-Jafari, M.T.
PDB entry 9c22: Crystal structure of chimeric hemagglutinin cH11/1 in complex with broad protective antibody 3E1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.6 Å
Deposited: 2024-05-30
Authors: Nguyen, T.K.Y., Wilson, I.A.
PDB entry 9c23: Cyan thermostable protein (CTP) 1.0 at pH 6.5
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-05-30
Authors: Jurkowski, A.J., DeVore, N.M.
PDB entry 9c24: Fab F946 in complex with OspCB
Classification: IMMUNE SYSTEM
Source organism: Borreliella burgdorferi; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-05-30
Authors: Rudolph, M.J., Mantis, N.
PDB entry 9c25: Cyan thermostable protein (CTP) 1.0 at pH 8.5
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-05-30
Authors: Jurkowski, A.J., Criblez, T.A., DeVore, N.M.
PDB entry 9c26: Cyan thermostable protein (CTP) 0.5 at pH 6.5
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-05-30
Authors: Jurkowski, A.J., Brown, A., DeVore, N.M.
PDB entry 9c27: Infectious B19V capsid
Classification: VIRUS
Source organism: Human parvovirus B19
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-05-30
Authors: Lee, H., Hafenstein, S.
PDB entry 9c28: Structure of endogenous Glutamine synthetase from rat model of Alzheimer's disease
Classification: LIGASE
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-05-30
Authors: Khalili Samani, E., Keszei, A.F.A., Mazhab-Jafari, M.T.
PDB entry 9c29: Hexadecamer of NL4-3 WT HIV-1 intasome
Classification: VIRAL PROTEIN/DNA
Source organism: HIV-1 06TG.HT008; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2024-05-30
Authors: Lyumkis, D., Jing, T., Zhang, Z.
PDB entry 9c2a: Cryo-EM structure of the human P2X1 receptor in the apo closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-05-30
Authors: Oken, A.C., Lisi, N.E., Ditter, I.A., Shi, H., Mansoor, S.E.
PDB entry 9c2b: Cryo-EM structure of the human P2X1 receptor in the ATP-bound desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2024-05-30
Authors: Oken, A.C., Lisi, N.E., Ditter, I.A., Shi, H., Mansoor, S.E.
PDB entry 9c2c: Cryo-EM structure of the human P2X1 receptor in the NF449-bound inhibited state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-05-30
Authors: Oken, A.C., Lisi, N.E., Ditter, I.A., Shi, H., Mansoor, S.E.
PDB entry 9c2d: Bacteriophage Sf14 Capsid Icosahedral reconstruction
Classification: VIRUS
Source organism: Shigella phage Sf14
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-05-30
Authors: Subramanian, S., Kerns, H.R., Braverman, S.G., Doore, S.M.
PDB entry 9c2f: Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-05-30
Authors: Wu, C., Skiniotis, G.
PDB entry 9c2g: ISOBUTYLENE EPOXIDE HYDROLASE FROM MYCOLICIBACTERIUM
Classification: HYDROLASE
Source organism: Mycolicibacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-05-30
Authors: Rose, R.B., Swartz, P., Faulkner, N.W.
PDB entry 9c2h: SARS-CoV-2 Nucleocapsid Dimerization Domain bound to Fab-NP1E9 and Fab-NP3B4
Classification: VIRAL PROTEIN
Source organism: Mus sp.; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-05-31
Authors: Landeras-Bueno, S., Hariharan, C., Diaz Avalos, R., Ollmann Saphire, E.
PDB entry 9c2i: Inward-facing, ligand-free Multidrug Resistance-associated protein 2 (MRP2)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2024-05-31
Authors: Koide, E., Chen, J.
PDB entry 9c2k: The crystal structure of HIV-1 Rev Response Element Stem-Loop II in complex with a Fab
Classification: RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-05-31
Authors: Ojha, M., Koirala, D.
PDB entry 9c2r: M. tuberculosis PKS13 acyltransferase (AT) domain sulfate free apo form
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-05-31
Authors: Krieger, I.V., Tang, S., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)
PDB entry 9c2t: Infectious B19V capsid
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human parvovirus B19
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-05-31
Authors: Lee, H., Hafenstein, S.
PDB entry 9c2y: Crystal Structure of JF1cpCasp2 in complex with MUR-65
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-05-31
Authors: Fuller, J.L., Finzel, B.C., Shi, K.
PDB entry 9c34: Proline utilization A with the FADH- N5 atom covalently modified by proline
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-05-31
Authors: Tanner, J.J., Buckley, D.P.
PDB entry 9c35: Proline utilization A with the covalent acyl-enzyme intermediate in the aldehyde dehydrogenase active site
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-05-31
Authors: Tanner, J.J., Buckley, D.P.
PDB entry 9c36: Proline utilization A complexed with the substrate L-glutamate gamma-semialdehyde in the aldehyde dehydrogenase active site
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-05-31
Authors: Tanner, J.J., Buckley, D.P.
PDB entry 9c37: Nir2 NirD domain dimer
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.452 Å
Deposited: 2024-05-31
Authors: Rahn, T.A., Airola, M.V.
PDB entry 9c38: Nir1 NirD domain dimer
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-05-31
Authors: Rahn, T.A., Airola, M.V.
PDB entry 9c39: Bacteriophage Sf14 neck C6 reconstruction
Classification: VIRUS
Source organism: Shigella phage Sf14
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-05-31
Authors: Subramanian, S., Kerns, H.R., Braverman, S.G., Doore, S.M.
PDB entry 9c3a: Bacteriophage Sf14 Capsid Empty Icosahedral reconstruction
Classification: VIRUS
Source organism: Shigella phage Sf14
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-05-31
Authors: Subramanian, S., Kerns, H.R., Braverman, S.G., Doore, S.M.
PDB entry 9c3b: Structure of the Shigella flexneri bacteriophage Sf14 - tail helical
Classification: VIRUS
Source organism: Shigella phage Sf14
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-05-31
Authors: Subramanian, S., Kerns, H.R., Braverman, S.G., Doore, S.M.
PDB entry 9c3c: Cryo-EM structure of native dystrophin-glycoprotein complex (DGC)
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-05-31
Authors: Liu, S., Su, T., Xia, X., Zhou, Z.H.
PDB entry 9c3d: Crystal structure of metallo-beta-lactamase superfamily protein CcrA-like_MBL-B1 from Dyadobacter fermentans
Classification: HYDROLASE
Source organism: Dyadobacter fermentans DSM 18053
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-05-31
Authors: Kim, Y., Maltseva, N., Welk, L., Endres, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9c3e: TCR - CD3 complex bound to HLA
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-05-31
Authors: Notti, R.Q., Walz, T.
PDB entry 9c3f: Cryo-EM structure of E. coli AmpG
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-05-31
Authors: Sverak, H., Worrall, L.J., Strynadka, N.C.J.
PDB entry 9c3g: human cGAS core domain (K427E/K428E) bound to Cladophorol A
Classification: DNA BINDING PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-05-31
Authors: Kissai, M., Stanfield, R.L., Lairson, L.L.
PDB entry 9c3h: Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2024-06-01
Authors: Erzberger, J.P., Cruz, V.E.
PDB entry 9c3i: Rebuilt CNOT3/tRNA-LEU structure
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-01
Authors: Erzberger, J.P., Cruz, V.E.
PDB entry 9c3j: Cryo-EM structure of EV-D68 B3 Virus-like particle
Classification: VIRUS LIKE PARTICLE
Source organism: Human enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2024-06-01
Authors: Cheng, J., Krug, P.W., Lei, H., Moss, D.L., Huang, R., Lang, Z.C., Morton, A.J., Shen, C., Pierson, T.C., Zhou, T., Ruckwardt, T.J., Kwong, P.D.
PDB entry 9c3k: Crystal structure of GDP-bound KRAS G12D/M67R: Suppressing G12D oncogenicity via second-site M67R mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-06-01
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c3m: Crystal structure of GDP-bound KRAS G12D/F28K: Suppressing G12D oncogenicity via second-site F28K mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-06-01
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c3n: Crystal structure of GDP-bound KRAS G12D/P34R: Suppressing G12D oncogenicity via second-site P34R mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-06-01
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c3q: Crystal structure of GDP-bound KRAS G12D/R41Q: Suppressing G12D oncogenicity via second-site R41Q mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2024-06-01
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c3r: Crystal structure of GDP-bound KRAS G12D/V45E: Suppressing G12D oncogenicity via second-site V45E mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-06-02
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c3s: Crystal structure of DNA N6-Adenine Methyltransferase M.BceJIV from Burkholderia cenocepacia in complex with duplex DNA substrate containing GTATAC as recognition sequence
Classification: DNA BINDING PROTEIN
Source organism: Burkholderia cenocepacia; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2024-06-02
Authors: Kottur, J., Quintana-Feliciano, R., Aggarwal, A.K.
PDB entry 9c3t: Crystal structure of DNA N6-Adenine Methyltransferase M.BceJIV from Burkholderia cenocepacia in complex with duplex DNA substrate containing GTAAAC as recognition sequence
Classification: DNA BINDING PROTEIN
Source organism: Burkholderia cenocepacia; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2024-06-02
Authors: Kottur, J., Quintana-Feliciano, R., Aggarwal, A.K.
PDB entry 9c3u: Crystal structure of DNA N6-Adenine Methyltransferase M.BceJIV from Burkholderia cenocepacia in complex with duplex DNA substrate containing GTTTAC as recognition sequence
Classification: DNA BINDING PROTEIN
Source organism: Burkholderia cenocepacia; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2024-06-02
Authors: Kottur, J., Quintana-Feliciano, R., Aggarwal, A.K.
PDB entry 9c3v: Crystal structure of GDP-bound KRAS G12D/D54R: Suppressing G12D oncogenicity via second-site D54R mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2024-06-02
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c3w: Crystal structure of biphenyl synthase from Malus domestica complexed with diketide-CoA mimetics
Classification: TRANSFERASE
Source organism: Malus domestica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-06-02
Authors: Re, R.N., Noel, J.P., Burkart, M.D.
PDB entry 9c3x: Crystal structure of biphenyl synthase from Malus domestica complexed with triketide-CoA mimetic
Classification: TRANSFERASE
Source organism: Malus domestica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-06-02
Authors: Re, R.N., Noel, J.P., Burkart, M.D.
PDB entry 9c3y: Crystal structure of biphenyl synthase from Malus domestica complexed with tetraketide-CoA mimetic
Classification: TRANSFERASE
Source organism: Malus domestica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2024-06-02
Authors: Re, R.N., Noel, J.P., Burkart, M.D.
PDB entry 9c3z: Crystal structure of GDP-bound KRAS G12D/G60R: Suppressing G12D oncogenicity via second-site G60R mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-06-02
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c40: Crystal structure of GDP-bound KRAS G12D/V103Y: Suppressing G12D oncogenicity via second-site V103Y mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-06-02
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c41: Crystal structure of GDP-bound KRAS G12D/E62Q: Suppressing G12D oncogenicity via second-site E62Q mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-06-02
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c42: Structure of human MR1-ellagic acid in complex with human MAIT A-F7 TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-06-02
Authors: Wang, C.J.H., Le Nours, J., Rossjohn, J.
PDB entry 9c43: Crystal structure of GDP-bound KRAS E3K/G12D: Suppressing G12D oncogenicity via second-site E3K mutation
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-06-03
Authors: Tran, T.H., Dharmaiah, S., Simanshu, D.K.
PDB entry 9c44: SARS-CoV-2 S + S2L20
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-06-03
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9c45: SARS-CoV-2 S + S2L20 (local refinement of NTD and S2L20 Fab variable region)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-03
Authors: McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9c46: Right-left hybrid parallel G-quadruplex from SLC2A1 promoter
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-06-03
Authors: Xing, E.R., Yatsunyk, L.A.
PDB entry 9c47: TRRAP module of the human TIP60 complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-06-03
Authors: Yang, Z., Mameri, A., Florez Ariza, A.J., Cote, J., Nogales, E.
PDB entry 9c48: Cryo-EM structure of the full-length human P2X4 receptor in the ATP-bound desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-06-03
Authors: Shi, H., Ditter, I.A., Oken, A.C., Mansoor, S.E.
PDB entry 9c49: Cryo-EM structure of Danio rerio voltage-sensing phosphatase (VSP) phosphatase domain
Classification: MEMBRANE PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-06-03
Authors: Zhang, L., Brohawn, S.G.
PDB entry 9c4a: Cryo-EM Structure of EV-D68 Vaccine Candidate - A2 Subclade Virus-like Particle
Classification: VIRUS LIKE PARTICLE
Source organism: Human enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2024-06-03
Authors: Cheng, J., Krug, P.W., Lei, H., Moss, D.L., Huang, R., Lang, Z.C., Morton, A.J., Shen, C., Pierson, T.C., Zhou, T., Ruckwardt, T.J., Kwong, P.D.
PDB entry 9c4b: Second BAF53a of the human TIP60 complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-06-03
Authors: Yang, Z., Mameri, A., Florez Ariza, A.J., Cote, J., Nogales, E.
PDB entry 9c4c: The structure of two MntR dimers bound to the native mnep promoter sequence
Classification: GENE REGULATION
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-06-04
Authors: Shi, H., Fu, Y., Glasfeld, A., Ahuja, S.
PDB entry 9c4d: The structure of 4 MntR homodimers bound to the promoter sequence of mnep
Classification: GENE REGULATION
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.17 Å
Deposited: 2024-06-04
Authors: Shi, H., Fu, Y., Glasfeld, A., Ahuja, S.
PDB entry 9c4e: Structure of endogenous DPYSL2 from rat model of Alzheimer's disease
Classification: NEUROPEPTIDE
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-06-04
Authors: Khalili Samani, E., Keszei, A.F.A., Mazhab-Jafari, M.T.
PDB entry 9c4f: Infectious B19V capsid
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human parvovirus B19
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-04
Authors: Lee, H., Hafenstein, S.
PDB entry 9c4g: Cutibacterium acnes 50S ribosomal subunit with Clindamycin bound
Classification: ANTIBIOTIC
Source organism: Cutibacterium acnes
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-06-04
Authors: Lomakin, I.B., Devarkar, S.C., Bunick, C.G.
PDB entry 9c4h: Double helical structure of influenza D RNP complex
Classification: VIRAL PROTEIN,RNA BINDING PROTEIN/RNA
Source organism: Influenza D virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.6 Å
Deposited: 2024-06-04
Authors: Peng, R., Chang, Y.-W.
PDB entry 9c4i: Centrolobium microchaete seed lectin (CML) complexed with Man1-3Man-OMe
Classification: SUGAR BINDING PROTEIN
Source organism: Centrolobium microchaete
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-06-04
Authors: Nascimento, K.S., Pinto-Junior, V.R., Lima, F.E.O., Osterne, V.J.S., Oliveira, M.V., Ferreira, V.M.S., Cavada, B.S.
PDB entry 9c4k: Yersinia entomophaga holotoxin complex in prepore conformation
Classification: TOXIN
Source organism: Yersinia entomophaga
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-06-04
Authors: Low, Y.S., Landsberg, M.J.
PDB entry 9c4l: Crystal structure of mutant NonPro1 Tautomerase Superfamily Member NJ7-V1P in complex with 3-bromopropiolate inhibitor
Classification: ISOMERASE/INHIBITOR
Source organism: Nostoc sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-06-04
Authors: Hardtke, H.A., Venkat Ramani, M.K., Zhang, Y.J.
PDB entry 9c4m: Crystal Structure of A. baumannii GuaB dCBS with inhibitor G6 (3826)
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2024-06-04
Authors: Harris, S.F., Wu, P.
PDB entry 9c4n: Infectious B19V capsid
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-06-04
Authors: Lee, H., Hafenstein, S.
PDB entry 9c4o: Cryo-EM structure of PqqU with ligand PQQ
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å
Deposited: 2024-06-04
Authors: Munder, F., Venugopal, H., Grinter, R.
PDB entry 9c4p: Crystal structure of wild-type arabidopsis thaliana acetohydroxyacid synthase in complex with commercial herbicide triasulfuron
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-06-05
Authors: Cheng, Y., Guddat, L.W.
PDB entry 9c4q: Crystal structure of wild-type arabidopsis thaliana acetohydroxyacid synthase in complex with newly designed herbicide FMO
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-06-05
Authors: Cheng, Y., Guddat, L.W.
PDB entry 9c4r: Crystal structure of wild-type arabidopsis thaliana acetohydroxyacid synthase in complex with newly designed herbicide CMO
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2024-06-05
Authors: Cheng, Y., Guddat, L.W.
PDB entry 9c4s: Menin mutant G331R in complex with MLL peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2024-06-05
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 9c4t: menin mutant M327I in complex with MLL peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.461 Å
Deposited: 2024-06-05
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 9c4u: Menin mutant T349M in complex with MLL peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.569 Å
Deposited: 2024-06-05
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 9c4v: Menin mutant G331D in complex with MLL peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-06-05
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 9c4w: Menin mutant - G331R
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.398 Å
Deposited: 2024-06-05
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 9c4x: Menin mutant - M327I
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.577 Å
Deposited: 2024-06-05
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 9c4y: Menin mutant - T349M
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.309 Å
Deposited: 2024-06-05
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 9c4z: Menin mutant - G331D
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-06-05
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 9c50: Replacement of a single residue changes the primary specificity of thrombin
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-06-05
Authors: Dei Rossi, A., Deavila, S., Mohammed, B.M., Korolev, S., Di Cera, E.
PDB entry 9c51: Cryo-EM structure of the Strand displacement Complex (IV) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Classification: Transferase/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2024-06-05
Authors: Nayak, A.R., Sokolova, V.O., Sillamaa, S., Sedmen, J., Temiakov, D.
PDB entry 9c52: Cryo-EM structure of the Strand displacement Complex (I) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Classification: Transferase/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2024-06-05
Authors: Nayak, A.R., Sokolova, V.O., Sillamaa, S., Sedmen, J., Temiakov, D.
PDB entry 9c53: Cryo-EM structure of the Strand displacement Complex (II) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Classification: Transferase/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-06-05
Authors: Nayak, A.R., Sokolova, V.O., Sillamaa, S., Sedmen, J., Temiakov, D.
PDB entry 9c54: Crystal structure of human PTPN2 catalytic domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-06-05
Authors: Bester, S.M., Linwood, R., Wu, W.-I., Mou, T.-C.
PDB entry 9c55: Crystal structure of human PTPN2 in complex with active site inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-06-05
Authors: Bester, S.M., Linwood, R., Wu, W.-I., Mou, T.-C.
PDB entry 9c56: Crystal structure of human PTPN2 in complex with allosteric inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-06-05
Authors: Bester, S.M., Linwood, R., Wu, W.-I., Mou, T.-C.
PDB entry 9c57: Reconstituted P400 Subcomplex of the human TIP60 complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-06-05
Authors: Yang, Z., Mameri, A., Florez Ariza, A.J., Cote, J., Nogales, E.