LiteFold/PDB huggingface dataset:
PDB entry 9dom: PVTX-405: A Potent, Highly Selective, and Orally Efficacious Molecular Glue Degrader of IKZF2 for Cancer Immunotherapy
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-09-19
Authors: Strickland, C.O., Rice, C.T.
PDB entry 9don: Crystal structure of eIF4e in complex with Compound 5-PA
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.091 Å
Deposited: 2024-09-19
Authors: Meagher, J.L., Stuckey, J.A.
PDB entry 9doo: Cryo-EM structure of LptB2FG apo-III
Classification: LIPID TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-09-19
Authors: Su, C.C.
PDB entry 9dop: Inhibiting peptidylarginine deiminases (PAD1-4) by targeting a Ca2+ dependent allosteric binding site
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2024-09-19
Authors: Liu, S.
PDB entry 9doq: Cryo-EM structure of LptB2FGC apo-I
Classification: LIPID TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-09-19
Authors: Su, C.C.
PDB entry 9dor: Cryo-EM structure of LptB2FGC apo-II
Classification: LIPID TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2024-09-19
Authors: Su, C.C.
PDB entry 9dos: Crystal structure of sphA with hydroVGQ
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus Af293
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-09-19
Authors: Hai, Y., Xi, W.
PDB entry 9dou: Taeniopygia guttata R2 retrotransposon (R2Tg) initiating target-primed reverse transcription
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Taeniopygia guttata; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-09-19
Authors: Wilkinson, M.E., Edmonds, K.H.K., Zhang, F.
PDB entry 9dow: h-LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMP bound)
Classification: TRANSLATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-09-19
Authors: Devarkar, S.C., Xiong, Y.
PDB entry 9dox: Fibrillar assembly of an L-enantiopure, C-alpha methylated, macrocyclic beta-hairpin
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-09-20
Authors: Samdin, T.D., Lubkowski, J., Anderson, C.F., Schneider, J.P.
PDB entry 9doy: Fibrillar assembly of an D-enantiopure, C-alpha methylated, macrocyclic beta-hairpin
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-09-20
Authors: Samdin, T.D., Lubkowski, J., Anderson, C.F., Schneider, J.P.
PDB entry 9doz: Myocilin OLF oligomers
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.454 Å
Deposited: 2024-09-20
Authors: Scelsi, H.F., Huard, D.J.E., Lieberman, R.L.
PDB entry 9dp0: Fibrillar assembly of racemic, C-alpha methylated, macrocyclic beta-hairpins
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-09-20
Authors: Samdin, T.D., Lubkowski, J., Anderson, C.F., Schneider, J.P.
PDB entry 9dp1: APE1 N174A Substrate Complex with Abasic DNA
Classification: HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-09-20
Authors: DeHart, K.M., Freudenthal, B.D.
PDB entry 9dp2: APE1 N174A Product Complex with Abasic DNA
Classification: HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-09-20
Authors: DeHart, K.D., Freudenthal, B.D.
PDB entry 9dp3: APE1 N174D Product Complex with Abasic DNA
Classification: HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-09-20
Authors: Hoitsma, N.M., DeHart, K.D., Freudenthal, B.D.
PDB entry 9dp4: APE1 N174Q Product Complex with Abasic DNA
Classification: HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-09-20
Authors: DeHart, K.D., Hoitsma, N.M., Freudenthal, B.D.
PDB entry 9dp5: Crystal Structure of Hydra Adenosine Deaminase Acting on RNA (ADAR) Deaminase Domain
Classification: RNA BINDING PROTEIN
Source organism: Hydra vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.998 Å
Deposited: 2024-09-20
Authors: Fisher, A.J., Wilcox, X.E.
PDB entry 9dp6: Mycolicibacterium smegmatis MmpL5-AcpM structure
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-09-20
Authors: Maharjan, R., Klenotic, P.A., Zhang, Z., Yu, E.W.
PDB entry 9dp8: A DARPin fused to the 1TEL crystallization chaperone via a helical Lys-Gln-Arg linker
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.47 Å
Deposited: 2024-09-20
Authors: Pedroza Romo, M.J., Keliiliki, A.C., Noakes, E., Averett, B., Moody, J.D.
PDB entry 9dp9: Structure of a Tick-Borne Flavivirus xrRNA
Classification: RNA
Source organism: Powassan virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-09-20
Authors: Langeberg, C.J., Kieft, J.S., Sherlock, M.E., Szucs, M.J., Vicens, Q.
PDB entry 9dpa: Human LysRS bound to unmodified tRNA-Lys3 (3'-CCA Docked State, AMP bound)
Classification: TRANSLATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-09-20
Authors: Devarkar, S.C., Xiong, Y.
PDB entry 9dpb: Human LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMPCPP bound)
Classification: TRANSLATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-20
Authors: Devarkar, S.C., Xiong, Y.
PDB entry 9dpc: Structure of Fab 297 in complex with influenza H1N1 A/Victoria/4897/2022 neuraminidase
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-09-20
Authors: Pholcharee, T., Wu, N.C.
PDB entry 9dpd: Cryo-EM structure of SerRS dimer in complex with one SIRT2
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2024-09-21
Authors: Yang, J., Zhang, Q., Zhang, H., Lander, G.C., Yang, X.
PDB entry 9dpe: CryoEM Structure of Human BTN2A1 ectodomain in complex with TCR-blocking 2A1.12 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2024-09-21
Authors: Ramesh, A., Fuller, J.R., Roy, S., Adams, E.
PDB entry 9dpf: Crystal structure of TMPRSS11D S368A complexed with its own zymogen activation motif
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-21
Authors: Fraser, B.J., Dong, A., Ilyassov, O., Seitova, A., Li, Y., Edwards, A., Benard, F., Arrowsmith, C., Structural Genomics Consortium (SGC)
PDB entry 9dpg: Structure of PmHMGR bound to mevalonate, CoA and NAD 2 minutes 20 seconds after reaction initiation at pH 9
Classification: OXIDOREDUCTASE/SUBSTRATE/INTERMEDIATE
Source organism: Pseudomonas sp. 'mevalonii'
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-09-21
Authors: Purohit, V., Steussy, C.N., Schmidt, T., Stauffacher, C.V., Rushton, P.
PDB entry 9dpi: Cryo-EM structure of SerRS dimer in complex with two SIRT2
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-09-21
Authors: Yang, J., Zhang, Q., Zhang, H., Lander, G., Yang, X.
PDB entry 9dpl: Human LysRS bound to cellular modified tRNA-Lys3 and AIMP2
Classification: TRANSLATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-09-22
Authors: Devarkar, S.C., Xiong, Y.
PDB entry 9dpm: BMP-9 Monomer Growth Factor with Cysteinylation
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-22
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpn: BMP-9 Wild-Type Dimer Without Radiation Damage in Neutral pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpo: BMP-9 Wild-Type Dimer With Radiation Damage in Neutral pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpp: BMP-9 Wild-Type Dimer in Acidic pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpq: BMP-9 Wild-Type Dimer without Radiation Damage in Acidic pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpr: BMP-9 Wild-Type Dimer with Radiation Damage in Acidic pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dps: BMP-9 G389S Dimer Without Radiation Damage in Neutral pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpt: BMP-9 G389S Dimer With Radiation Damage in Neutral pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpu: BMP-9 G389S Dimer in Acidic pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpv: BMP-9 K357R G389S Dimer Without Radiation Damage in Neutral pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpw: BMP-9 K357R G389S Dimer With Radiation Damage in Neutral pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpx: BMP-9 G389S K357R Dimer in Acidic pH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpy: BMP-10 with BMP-9 Crystal Contacts
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-09-23
Authors: Schwartze, T.A., Hinck, A.P.
PDB entry 9dpz: Potent inhibition of the protein arginine deiminases (PAD1-4) by targeting a Ca2+ dependent allosteric binding site
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-09-23
Authors: Liu, S.
PDB entry 9dq0: Crystal structure of apo HrmJ from Streptomyces sp. CFMR 7
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. CFMR 7
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-09-23
Authors: Zheng, Y.-C., Chang, W.-C., Swartz, P.
PDB entry 9dq1: Crystal structure of HrmJ from Streptomyces sp. CFMR 7 (HrmJ-ssc) complexed with manganese (II), 2-oxoglutarate and 6-nitronorleucine
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. CFMR 7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-23
Authors: Zheng, Y.-C., Swartz, P., Chang, W.-C.
PDB entry 9dq2: Crystal structure of HrmJ from Streptomyces sp. CFMR 7 (HrmJ-ssc) complexed with vanadyl(IV)-oxo, succinate and 6-nitronorleucine
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. CFMR 7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-09-23
Authors: Zheng, Y.-C., Chang, W.-C.
PDB entry 9dq3: Crystal structure of engineered Ipilimumab (mipi.4) Fab in complex with human CTLA-4
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-09-23
Authors: Diong, S.J., Lee, P.S.
PDB entry 9dq4: Crystal structure of engineered Ipilimumab (mipi.4) Fab in complex with mouse CTLA-4
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-09-23
Authors: Diong, S.J., Lee, P.S.
PDB entry 9dq5: Crystal structure of Anti-CTLA-4 Fab (9D9) in complex with mouse CTLA-4
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-09-23
Authors: Lee, P.S., Diong, S.J., Robison, B.
PDB entry 9dq7: Borrelia burgdorferi LDH with NADH, oxamate and FBS
Classification: OXIDOREDUCTASE
Source organism: Borreliella burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-09-23
Authors: Lynch, M.J.
PDB entry 9dq9: Borrelia burgdorferi LDH with NADH and oxamate
Classification: OXIDOREDUCTASE
Source organism: Borreliella burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-09-23
Authors: Lynch, M.J.
PDB entry 9dqa: Crystal structure of bovine RPE65 in complex with EYE-002
Classification: ISOMERASE/INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-09-23
Authors: Kiser, P.D., Bassetto, M.
PDB entry 9dqb: Cryo-EM structure of a double-loaded SUMO E1-E2-SUMO1 complex.
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-09-23
Authors: Jia, L., Nayak, D., Ruben, E.A., Nayak, A., Wasmuth, E.V., Olsen, S.K.
PDB entry 9dqc: Hare calicivirus protruding domain and A-trisaccharide complex
Classification: VIRAL PROTEIN
Source organism: Hare calicivirus Australia-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-09-23
Authors: Reese, T., Pancera, M., Hansman, G.
PDB entry 9dqd: cryo-EM structure of human Cereblon/DDB1 in complex with a non-traditional CRBN binder
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-09-23
Authors: Zhu, J., Pagarigan, B.
PDB entry 9dqe: NMR Solution structure of the 2:1 Coptisine- BLM-G4 Complex
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2024-09-24
Authors: Wang, K.B.
PDB entry 9dqf: Crystal structure of bifunctional GlmU from Staphylococcus aureus NCTC 8325 complexed with acetyl CoA and citrate
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-24
Authors: Pederick, J.L., Bruning, J.B.
PDB entry 9dqh: CryoEM structure of Gq-coupled MRGPRD with a new agonist EP-2825
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-09-24
Authors: Cao, C., Wang, C., Liu, Y., Fay, J.F., Roth, B.L.
PDB entry 9dqi: D306N Mutant of M.tuberculosis MenD (SEPHCHC Synthase)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-09-24
Authors: Johnston, J.M., Ho, N.A.T., Given, F.M., Bulloch, E.M.M., Allison, T.M., Jiao, W.
PDB entry 9dqj: CryoEM structure of Gq-coupled MRGPRD with a new agonist EP-3945
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-24
Authors: Cao, C., Wang, C., Liu, Y., Fay, J.F., Roth, B.L.
PDB entry 9dqk: human ClpP - Apo - A192E / E196R
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-09-24
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9dql: human ClpP - Bortezomib - A192E / E196R
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-09-24
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9dqm: Crystal Structure Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP bound)
Classification: TRANSFERASE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-09-24
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dqn: Nan Regulatory Protein (NanR) - DNA complex from Streptococcus pneumoniae
Classification: TRANSCRIPTION/DNA
Source organism: Streptococcus pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2024-09-24
Authors: Wood, D.M., Dobson, R.C.J., Horne, C.R.
PDB entry 9dqp: Crystal structure of apo-HrmJ from Streptomyces sp. Ag109_G2-6 (HrmJ-ssa)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. Ag109_G2-6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-09-24
Authors: Zheng, Y.-C., Chang, W.-C.
PDB entry 9dqq: Crystal structure of HrmJ from Streptomyces sp. Ag109_G2-6 (HrmJ-ssa) complexed with ferric iron(III) and 2-oxoglutarate
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. Ag109_G2-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-09-24
Authors: Zheng, Y.-C., Chang, W.-C.
PDB entry 9dqr: Crystal structure of HrmJ from Streptomyces sp. Ag109_G2-6 (HrmJ-ssa) complexed with vanadyl(IV)-oxo and succinate
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. Ag109_G2-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-09-24
Authors: Zheng, Y.-C., Chang, W.-C.
PDB entry 9dqs: Structure of Tudor domain from Mycobacterium smegmatis UvrD1
Classification: HYDROLASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-09-24
Authors: Warren, G.M., Shuman, S.
PDB entry 9dqt: Binary substrate complex of DNA polymerase iota with DNA (template A)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2024-09-24
Authors: Frevert, Z., Reusch, D., Freudenthal, B., Washington, M.T.
PDB entry 9dqu: Product complex of DNA polymerase iota with Pyrophosphate
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-09-24
Authors: Frevert, Z., Reusch, D., Freudenthal, B., Washington, M.T.
PDB entry 9dqv: Structure of western equine encephalitis virus CBA87 VLP in complex with human PCDH10 EC1
Classification: VIRUS LIKE PARTICLE
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-09-24
Authors: Abraham, J., Fan, X., Li, W.
PDB entry 9dqw: Crystal Structure of UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli in complex with UMA and AMP-PNP
Classification: LIGASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-09-24
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dqx: Structure of western equine encephalitis virus CBA87 VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-24
Authors: Abraham, J., Fan, X., Li, W.
PDB entry 9dqy: Structure of western equine encephalitis virus Imperial 181 VLP in complex with house sparrow PCDH10 EC1
Classification: VIRUS LIKE PARTICLE
Source organism: Passer domesticus; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-09-24
Authors: Abraham, J., Fan, X., Li, W.
PDB entry 9dqz: Structure of western equine encephalitis virus McMillan VLP in complex with human VLDLR
Classification: VIRUS LIKE PARTICLE
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-24
Authors: Abraham, J., Fan, X., Li, W.
PDB entry 9dr0: Hare calicivirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Hare calicivirus Australia-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-09-24
Authors: Reese, T., Pancera, M., Hansman, G.
PDB entry 9dr1: E. coli RNA polymerase consensus volume with a bound fluoride riboswitch in the ligand-bound state
Classification: TRANSFERASE/DNA/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-09-24
Authors: Porta, J.C., Ellinger, E., Liu, Y., Walter, N.G.
PDB entry 9dr4: Crystal structure of bifunctional GlmU from Staphylococcus aureus NCTC 8325 complexed with UTP, CoA and Glc 1-P
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-09-25
Authors: Pederick, J.L., Bruning, J.B.
PDB entry 9dr5: Crystal structure of Catechol 1,2-dioxygenase from Burkholderia multivorans (Zinc bound, P1 form)
Classification: HYDROLASE
Source organism: Burkholderia multivorans ATCC 17616
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-09-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dr6: Crystal structure of Catechol 1,2-dioxygenase from Burkholderia multivorans (Zinc bound)
Classification: HYDROLASE
Source organism: Burkholderia multivorans ATCC 17616
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-09-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dr7: Product complex of DNA polymerase iota with 2 monophosphates
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-09-25
Authors: Frevert, Z., Reusch, D., Freudenthal, B., Washington, M.T.
PDB entry 9dr8: Crystal structure of Catechol 1,2-dioxygenase from Burkholderia multivorans (Iron bound)
Classification: HYDROLASE
Source organism: Burkholderia multivorans ATCC 17616
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-09-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dr9: Binary product complex of DNA polymerase iota with DNA
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-09-25
Authors: Frevert, Z., Reusch, D., Freudenthal, B., Washington, M.T.
PDB entry 9dra: Crystal structure of Catechol 1,2-dioxygenase from Burkholderia multivorans (Iron and 4,5-dichloro-1,2-catechol bound)
Classification: HYDROLASE
Source organism: Burkholderia multivorans ATCC 17616
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2024-09-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9drb: Binary complex of DNA polymerase iota with product DNA
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-09-25
Authors: Frevert, Z., Reusch, D., Freudenthal, B., Washington, M.T.
PDB entry 9drc: Ternary substrate complex of DNA polymerase iota R71A mutant with DNA (template A) and dTTP
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-09-25
Authors: Frevert, Z., Reusch, D., Freudenthal, B., Washington, M.T.
PDB entry 9drd: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (Apo, monoclinic P form 2)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-09-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dre: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP bound, P21 form)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-09-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9drf: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (DTP bound, P21 form)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-09-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9drh: Crystal structure of Tet(X7) bound to anhydrotetracycline C10-benzoate ester
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-09-25
Authors: Tang, W.K., Tolia, N.H.
PDB entry 9dri: Crystal structure of SphA in complex with VGQ intermedaite
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-09-25
Authors: Xi, W., Hai, Y.
PDB entry 9drj: Cryo-EM structure of a SUMO E1-E2-SUMO1 complex.
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-09-25
Authors: Jia, L., Nayak, D., Ruben, E.A., Nayak, A., Wasmuth, E.V., Olsen, S.K.
PDB entry 9drk: Crystal structure of Mycobacterium tuberculosis biotin protein ligase in complex with Bio-1
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-09-25
Authors: McCue, W.M., Jayasinghe, Y.P., Aldrich, C.C., Ronning, D.R.
PDB entry 9drl: Cryo-EM structure of the T33-549 tetrahedral cage
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2024-09-25
Authors: Redler, R., Coudray, N., Lubner, J., Wang, S., Baker, D., Ekiert, D.C., Bhabha, G.
PDB entry 9drn: Crystal structure of Mycobacterium tuberculosis biotin protein ligase in complex with Bio-4
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2024-09-25
Authors: McCue, W.M., Jayasinghe, Y.P., Aldrich, C.C., Ronning, D.R.
PDB entry 9dro: FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, Oxadiazolone-peptide bound
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2024-09-25
Authors: Fellner, M.
PDB entry 9drq: Mumps virus fusion glycoprotein F stabilized in prefusion conformation
Classification: VIRAL PROTEIN
Source organism: Mumps orthorubulavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2024-09-26
Authors: Lai, Y.T., Stewart-Jones, G.B.E.
PDB entry 9drs: Crystal structure of M. tuberculosis PheRS-tRNA complex bound to inhibitor D-116
Classification: LIGASE/RNA
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-09-26
Authors: Gade, P., Chang, C., Forte, B., Wower, J., Gilbert, I.H., Baragana, B., Michalska, K., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9drt: Crystal structure of the complex of M. tuberculosis PheRS with cognate precursor tRNA and fragment DDD00805735
Classification: LIGASE/RNA
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2024-09-26
Authors: Chang, C., Michalska, K., Forte, B., Baragana, B., Gilbert, I.H., Wower, J., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dru: Crystal structure of 04709_4F04 Fab in complex with H1 HA from A/California/04/2009(H1N1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-09-26
Authors: Lin, T.H., Wilson, I.A.
PDB entry 9drv: Crystal structure of M. tuberculosis PheRS-tRNA complex bound to inhibitor D-004
Classification: LIGASE
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2024-09-26
Authors: Gade, P., Chang, C., Forte, B., Wower, J., Gilbert, I.H., Baragana, B., Michalska, K., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9drw: Myocilin OLF mutant A427T
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-09-26
Authors: Scelsi, H.F., Lieberman, R.L.
PDB entry 9drx: Human GABAA receptor of beta2-alpha1-beta2-alpha1-gamma2 subtype in complex with GABA plus Lamotrigine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-09-26
Authors: Zhou, J., Hibbs, R.E., Noviello, C.M.
PDB entry 9dry: CHIP U-box dimer bound to Fab 2F1
Classification: LIGASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.02 Å
Deposited: 2024-09-26
Authors: Unnikrishnan, A., Southworth, D.
PDB entry 9drz: Structure of Lichtheimia corymbifera Kinase in complex with GDP and MG
Classification: METAL BINDING PROTEIN
Source organism: Lichtheimia corymbifera
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-09-26
Authors: Wimberly-Gard, G.M., Shuman, S.
PDB entry 9ds0: Crystal structure of sphA with MeVGQ
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus Af293
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2024-09-26
Authors: Xi, W., Hai, Y.
PDB entry 9ds1: Crystal structure of 241_2F04 Fab in complex with H1 HA from A/California/04/2009(H1N1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-09-26
Authors: Lin, T.H., Wilson, I.A.
PDB entry 9ds2: Crystal structure of 346-54 Fab in complex with H1 HA from A/California/04/2009(H1N1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2024-09-26
Authors: Lin, T.H., Wilson, I.A.
PDB entry 9ds3: Crystal structure of Apo-241_2F04 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-26
Authors: Lin, T.H., Wilson, I.A.
PDB entry 9dsb: Crystal Structure of Spermin/spermidine N-Acetyltransferase from Enterococcus faecalis V583
Classification: TRANSFERASE
Source organism: Enterococcus faecalis V583
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-09-26
Authors: Kim, Y., Maltseva, N., Endres, M., Kuhn, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dsc: Crystal structure of Apo-241_2F04-A95a mutant Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-09-26
Authors: Lin, T.H., Wilson, I.A.
PDB entry 9dse: Cyanide-ligated Bordetella pertussis globin coupled sensor regulatory domain
Classification: SIGNALING PROTEIN
Source organism: Tohama I / ATCC BAA-589 / NCTC 13251
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-09-27
Authors: Hoque, N.J., Pope, S.R., Boal, A.K.
PDB entry 9dsf: Cyanide-ligated Bordetella pertussis globin coupled sensor regulatory domain S68A
Classification: SIGNALING PROTEIN
Source organism: Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-09-27
Authors: Hoque, N.J., Pope, S.R., Boal, A.K.
PDB entry 9dsg: Crystal structure of the SARS-CoV-2 RBD in complex with the cow antibody P2
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Bos taurus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-09-27
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9dsh: Crystal structure of the cow antibody P7
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-09-27
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9dsi: Crystal structure of the cow antibody 99
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-09-27
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9dsj: Crystal structure of the cow antibody 105
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-09-27
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9dsk: Crystal structure of the cow antibody 115
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-09-27
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9dsl: Structure of the SARS-CoV-2 S 6P trimer in complex with the cow antibody 99 Fab
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Bos taurus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-09-27
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9dsm: Cryo-EM structure of SSNA-1(R18E/R20E/Q98E) filaments
Classification: CELL CYCLE
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.55 Å
Deposited: 2024-09-27
Authors: Agostini, L., Biertumpfel, C., Mizuno, N.
PDB entry 9dsn: D306A Mutant of M.tuberculosis MenD (SEPHCHC Synthase)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-09-28
Authors: Johnston, J.M., Ho, N.A.T., Given, F.M., Allison, T.A., Bulloch, E.M.M., Jiao, W.
PDB entry 9dso: CRYO-EM STRUCTURE OF SACCHAROMYCES CEREVISIAE RAT1-RAI1-RTT103 COMPLEX
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2024-09-28
Authors: Chu, H.F., Tong, L.
PDB entry 9dsq: Thermotoga maritima threonylcarbamoyl adenylate synthase (TsaC2) in complex with products TC-AMP and pyrophosphate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-09-28
Authors: Kutshuashvili, A., Swairjo, M.A.
PDB entry 9dsr: Crystal structure of Fab MS-1805 in complex with NPNA3 peptide from circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-09-28
Authors: Jain, M., Wilson, I.A.
PDB entry 9dss: Crystal structure of Fab 7088 in complex with NPNA3 peptide from circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-09-28
Authors: Jain, M., Wilson, I.A.
PDB entry 9dst: Crystal structure of Fab MS-1805 in complex with N-terminal junction peptide from circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-09-28
Authors: Jain, M., Wilson, I.A.
PDB entry 9dsu: Crystal structure of Fab 7088 in complex with N-terminal junction peptide from circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2024-09-28
Authors: Jain, M., Wilson, I.A.
PDB entry 9dsv: Thermotoga maritima threonylcarbamoyl adenylate synthase (TsaC2) in complex with N-carboxy-L-threonine, magnesium and ATP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-09-29
Authors: Kutshuashvili, A., Swairjo, M.A.
PDB entry 9dsw: Thermotoga maritima threonylcarbamoyl adenylate synthase (TsaC2) in complex with L-threonine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-09-30
Authors: Kutshuashvili, A., Swairjo, M.A.
PDB entry 9dsx: Crystal structure of the complex of M. tuberculosis PheRS with cognate precursor tRNA and fragment DDD00107555
Classification: LIGASE/RNA
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-09-30
Authors: Chang, C., Michalska, K., Forte, B., Baragana, B., Gilbert, I.H., Wower, J., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dsy: Crystal Structure of C4-Dicarboxylate-Binding Periplasmic Protein (PA5167) of Tripartite ATP-independent Periplasmic Transporter Family from Pseudomonas aeruginosa PAO1 in Complex with Succinic Acid
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-09-30
Authors: Minasov, G., Shukla, S., Shuvalova, L., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dsz: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (DTP bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-30
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dt0: Human SERF2
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-09-30
Authors: Sahoo, B.R., Subramanian, V., Bardwell, J.C.A.
PDB entry 9dt2: Crystal structure of the engineered sulfonylurea repressor EsR (L7-D1), apo form
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-09-30
Authors: Schreiter, E.R., Leija, C., Kakani, N.K., McBride, K.E., Looger, L.L.
PDB entry 9dt3: Crystal structure of the engineered sulfonylurea repressor EsR (L11-C6), bound to ethametsulfuron-methyl
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-09-30
Authors: Schreiter, E.R., Leija, C., Kakani, N.K., McBride, K.E., Looger, L.L.
PDB entry 9dt4: Crystal structure of the engineered sulfonylurea repressor CsR (L4.2-20), apo form
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-09-30
Authors: Schreiter, E.R., Leija, C., Kakani, N.K., McBride, K.E., Looger, L.L.
PDB entry 9dt5: Crystal structure of the engineered sulfonylurea repressor CsR (L4.2-20), bound to chlorsulfuron
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-09-30
Authors: Schreiter, E.R., Leija, C., Kakani, N.K., McBride, K.E., Looger, L.L.
PDB entry 9dt6: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (CMP bound, P21 form)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-09-30
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dt7: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (5-O-phosphono-alpha-D-ribofuranose bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2024-09-30
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dt8: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP bound, Orthorhombic P)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2024-09-30
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dt9: Crystal Structure of 231_C2_TrkA
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-09-30
Authors: Bera, A.K., Schlichthaerle, T., Kang, A., Baker, D.
PDB entry 9dta: Crystal structure of the WDR domain of WDR91 in complex with DR3448
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-09-30
Authors: Zeng, H., Ahmad, H., Dong, A., Seitova, A., Counago, R.M., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9dtb: Crystal structure of the WDR domain of WDR91 in complex with DR3460
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-09-30
Authors: Zeng, H., Ahmad, H., Dong, A., Seitova, A., Counago, R.M., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9dtc: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose bound, orthrhombic form2)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-09-30
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9dtd: Crystal Structure of C2-01018
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-09-30
Authors: Bera, A.K., Schlichthaerle, T., Kang, A., Baker, D.
PDB entry 9dte: Crystal Structure of C2-02802
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-09-30
Authors: Bera, A.K., Schlichthaerle, T., Kang, A., Baker, D.
PDB entry 9dtf: Crystal structure of the complex of M. tuberculosis PheRS with cognate precursor tRNA and fragment DDD01008876
Classification: LIGASE/RNA
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-09-30
Authors: Chang, C., Michalska, K., Forte, B., Baragana, B., Gilbert, I.H., Wower, J., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dtg: The cryo-EM structure of apo KBTBD4
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2024-09-30
Authors: Xie, X., Mao, H., Liau, B., Zheng, N.
PDB entry 9dth: Tyr-His linked F33Y CuBMb
Classification: OXIDOREDUCTASE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-10-01
Authors: Lu, Y., Liu, Y.
PDB entry 9dti: F33Y CuBMb
Classification: OXIDOREDUCTASE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.681 Å
Deposited: 2024-10-01
Authors: Lu, Y., Liu, Y.
PDB entry 9dtj: Crystal structure of KPC-2 complexed with compound 13
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-10-01
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9dtk: Crystal structure of UDP-N-acetylenolpyruvoylglucosamine reductase (MurB) from Brucella ovis
Classification: OXIDOREDUCTASE
Source organism: Brucella ovis ATCC 25840
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-10-01
Authors: Martinez-Julvez, M., Medina, M., Minjarez-Saenz, M.
PDB entry 9dtl: Crystal Structure of C4-Dicarboxylate-Binding Protein (PA0884) of Tripartite ATP-independent Periplasmic Transporter Family from Pseudomonas aeruginosa PAO1 in Complex with Succinic Acid
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-10-01
Authors: Minasov, G., Shukla, S., Shuvalova, L., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9dtp: GlfT2 from Nocardia brasiliensis
Classification: TRANSFERASE
Source organism: Nocardia brasiliensis ATCC 700358
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2024-10-01
Authors: Carter, A.W., Dodge, G.J., Kiessling, L.L.
PDB entry 9dtq: The structure of HDAC2-CoREST in complex with KBTBD4R313PRR mutant
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-10-01
Authors: Xie, X., Liau, B., Zheng, N.
PDB entry 9dtr: Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution
Classification: SPLICING
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2024-10-01
Authors: Wilkinson, M.E., Hoskins, A.A.
PDB entry 9dts: Crystal structure of the human eIF4A1/AMPPNP/amidino-rocaglate/polypurine RNA complex
Classification: TRANSLATION, HYDROLASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-10-01
Authors: Conley, J.F., Allen, K.N.
PDB entry 9dtt: Cryo-EM structure of DENV2 NS5 in complex with Stem Loop A (SLA)
Classification: VIRAL PROTEIN/RNA
Source organism: dengue virus type 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-10-01
Authors: Obi, J.O., Fields, J.K., Snyder, A.G., Deredge, D.J.
PDB entry 9dtu: Structure of the Measles virus Fusion protein ectodomain E170G E455G with mutated furin cleavage site in the pre-fusion conformation
Classification: VIRAL PROTEIN
Source organism: Measles virus strain Ichinose-B95a
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.05 Å
Deposited: 2024-10-01
Authors: Zyla, D., Saphire, E.O.
PDB entry 9dtv: Structure of D141A mutant of M.tuberculosis MenD (SEPHCHC Synthase)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-10-02
Authors: Johnston, J.M., Ho, N.A.T., Given, F.M., Allison, T.M., Bulloch, E.M.M., Jiao, W.