LiteFold/PDB huggingface dataset:
PDB entry 8ezi: A tethered niacin-derived pincer complex with a nickel-carbon bond in lactate racemase R98A/R100A variant modeled with separated sulfite and NPN
Classification: ISOMERASE
Source organism: Lactiplantibacillus plantarum WCFS1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-10-31
Authors: Gatreddi, S., Hausinger, R.P., Hu, J.
PDB entry 8ezj: Cryo-EM structure of the S. cerevisiae Arf-like protein Arl1 bound to the Arf guanine nucleotide exchange factor Gea2
Classification: LIPID TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-11-01
Authors: Duan, H.D., Li, H.
PDB entry 8ezk: Pfs25 in complex with transmission-reducing antibody AS01-04
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum (isolate NF54)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-11-01
Authors: Shukla, N., Tang, W.K., Tolia, N.H.
PDB entry 8ezl: Pfs25 in complex with transmission-reducing antibody AS01-50
Classification: IMMUNE SYSTEM
Source organism: Plasmodium falciparum NF54
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-11-01
Authors: Shukla, N., Tang, W.K., Tolia, N.H.
PDB entry 8ezm: Pfs25 in complex with transmission-reducing antibody AS01-63
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-11-01
Authors: Shukla, N., Tang, W.K., Tolia, N.H.
PDB entry 8ezo: Lysozyme Anomalous Dataset at 220 K and 7.1 keV
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F.
PDB entry 8ezp: Lysozyme Anomalous Dataset at 260 K and 7.1 keV
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8ezq: Cryo-EM structure of the S. cerevisiae guanine nucleotide exchange factor Gea2
Classification: LIPID TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-11-01
Authors: Duan, H.D., Li, H.
PDB entry 8ezr: Crystal structure of the HipS(Lp)-HipT(Lp) complex from Legionella pneumophila, native protein
Classification: TOXIN
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-11-01
Authors: Stogios, P.J., Skarina, T., Michalska, K., Di Leo, R., Lin, J., Ensminger, A., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8ezs: Crystal structure of the HipS(Lp)-HipT(Lp) complex from Legionella pneumophila, Sel-met protein
Classification: TOXIN
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2022-11-01
Authors: Stogios, P.J., Skarina, T., Michalska, K., Di Leo, R., Lin, J., Ensminger, A., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8ezt: Crystal structure of HipB(Lp) from Legionella pneumophila
Classification: DNA BINDING PROTEIN
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-11-01
Authors: Stogios, P.J., Skarina, T., Di Leo, R., Lin, J., Ensminger, A., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8ezu: Lysozyme Anomalous Dataset at 273 K and 7.1 keV
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8ezv: SARS-CoV-2 Main Protease (Mpro) in Complex with ML2006a
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-11-01
Authors: Westberg, M., Fernandez, D., Lin, M.Z.
PDB entry 8ezw: Structure of Apo ZrgA deletion 124-184 from Vibrio cholerae
Classification: METAL BINDING PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-11-01
Authors: Valencia, D.W., Yukl, E.T.
PDB entry 8ezx: Lysozyme Anomalous Dataset at 293 K and 7.1 keV
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8ezz: SARS-CoV-2 Main Protease (Mpro) in Complex with ML2006a2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-11-01
Authors: Westberg, M., Fernandez, D., Lin, M.Z.
PDB entry 8f00: Lysozyme Anomalous Dataset at 293 K and 12 keV
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8f01: Thaumatin Anomalous Dataset at 293 K and 7.1 keV
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8f02: SARS-CoV-2 Main Protease (Mpro) in Complex with ML2006a4
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-11-01
Authors: Westberg, M., Fernandez, D., Lin, M.Z.
PDB entry 8f03: Thaumatin Anomalous Dataset at 293 K and 12 keV
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8f04: Structure of elevenin-Vc1 from venom of the Australian cone snail Conus victoriae
Classification: HORMONE
Experimental method: SOLUTION NMR
Deposited: 2022-11-01
Authors: Krishnarjuna, B., Sunanda, P., Norton, R.S.
PDB entry 8f05: Proteinase K Anomalous Dataset at 293 K and 7.1 keV
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8f06: Proteinase K Anomalous Dataset at 310 K and 7.1 keV
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8f07: Proteinase K Anomalous Dataset at 273 K and 12 keV
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2022-11-01
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8f09: Crystal structure of a trimethoprim-resistant dihydrofolate reductase (DHFR) enzyme from an uncultured soil bacterium
Classification: OXIDOREDUCTASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-11-02
Authors: Stogios, P.J., Evdokimova, D., Borek, D., Di Leo, R., Semper, C., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8f0a: Client-bound structure of a DegP trimer within a 12mer cage
Classification: CHAPERONE, HYDROLASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-11-02
Authors: Harkness, R.W., Ripstein, Z.A., Di Trani, J.M., Kay, L.E.
PDB entry 8f0b: Lysozyme Anomalous Dataset at 240 K and 7.1 keV
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-11-02
Authors: Doukov, T., Yabukarski, F., Herschlag, D.
PDB entry 8f0e: N-terminal WD40 domain of beta'-COPI subunit with four chains in the asymmetric unit
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2022-11-02
Authors: Dey, D., Hasan, S.S.
PDB entry 8f0f: HIV-1 wild type protease with GRL-110-19A, a chloroacetamide derivative based on Darunavir as P2' group
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2022-11-02
Authors: Wang, Y.-F., Agniswamy, J., Ghosh, A.K., Weber, I.T.
PDB entry 8f0g: Structure of SARS-CoV-2 Omicron BA.1 spike in complex with antibody Fab 1C3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2022-11-02
Authors: Yu, X., Zyla, D., Hastie, K.M., Saphire, E.O.
PDB entry 8f0h: Structure of SARS-CoV-2 spike with antibody Fabs 2A10 and 1H2 (Local refinement of the RBD and Fabs 1H2 and 2A10)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-11-02
Authors: Yu, X., Zyla, D., Hastie, K.M., Saphire, E.O.
PDB entry 8f0i: Crystal structure of SARS-CoV-2 receptor binding domain in complex with human antibody COVA309-22
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2022-11-03
Authors: Yuan, M., Wilson, I.A.
PDB entry 8f0j: Calcitonin Receptor in complex with Gs and Pramlintide analogue peptide San45
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2022-11-03
Authors: Cao, J., Sexton, P.M., Wootten, D.L., Belousoff, M.J.
PDB entry 8f0k: Human Amylin3 Receptor in complex with Gs and Pramlintide analogue peptide San385
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2022-11-03
Authors: Cao, J., Sexton, P.M., Wootten, D.L.
PDB entry 8f0l: Crystal Structure of the Human T cell Receptor CD3(EPSILON) N-Terminal Peptide Complexed with ADI-26906 FAB
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-11-03
Authors: Battles, M.B., Welin, M.
PDB entry 8f0m: Monobody 12D5 bound to KRAS(G12D)
Classification: SIGNALING PROTEIN/DE NOVO PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2022-11-03
Authors: Hattori, T., Glasser, E., Akkapeddi, P., Ketavarapu, G., Teng, K.W., Koide, A., Koide, S.
PDB entry 8f0n: Wobble Beetroot (A16U-U38G) dimer bound to DFHO
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-11-03
Authors: Passalacqua, L.F.M., Ferre-D'Amare, A.R.
PDB entry 8f0o: cryo-EM structure of homomeric kainate receptor GluK2 in resting (apo) state
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2022-11-03
Authors: Bogdanovic, N., Tajima, N.
PDB entry 8f0p: Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Homo sapiens; Periplaneta americana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-11-03
Authors: Kschonsak, M., Jao, C.C., Arthur, C.P., Rohou, A.L., Bergeron, P., Ortwine, D., McKerall, S.J., Hackos, D.H., Deng, L., Chen, J., Sutherlin, D., Dragovich, P.S., Volgraf, M., Wright, M.R., Payandeh, J., Ciferri, C., Tellis, J.C.
PDB entry 8f0q: Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Homo sapiens; Periplaneta americana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-11-03
Authors: Kschonsak, M., Jao, C.C., Arthur, C.P., Rohou, A.L., Bergeron, P., Ortwine, D., McKerall, S.J., Hackos, D.H., Deng, L., Chen, J., Sutherlin, D., Dragovich, P.S., Volgraf, M., Wright, M.R., Payandeh, J., Ciferri, C., Tellis, J.C.
PDB entry 8f0r: Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Homo sapiens; Periplaneta americana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-11-03
Authors: Kschonsak, M., Jao, C.C., Arthur, C.P., Rohou, A.L., Bergeron, P., Ortwine, D., McKerall, S.J., Hackos, D.H., Deng, L., Chen, J., Sutherlin, D., Dragovich, P.S., Volgraf, M., Wright, M.R., Payandeh, J., Ciferri, C., Tellis, J.C.
PDB entry 8f0s: Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Diguetia canities; Homo sapiens; Periplaneta americana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-11-03
Authors: Kschonsak, M., Jao, C.C., Arthur, C.P., Rohou, A.L., Bergeron, P., Ortwine, D., McKerall, S.J., Hackos, D.H., Deng, L., Chen, J., Sutherlin, D., Dragovich, P.S., Volgraf, M., Wright, M.R., Payandeh, J., Ciferri, C., Tellis, J.C.
PDB entry 8f0u: Structure of a 12mer DegP cage bound to the client protein hTRF1
Classification: CHAPERONE, HYDROLASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-11-04
Authors: Harkness, R.W., Ripstein, Z.A., Di Trani, J.M., Kay, L.E.
PDB entry 8f0v: Lipocalin-like Milk protein-2 - E38A mutant
Classification: LIPID BINDING PROTEIN
Source organism: Diploptera punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.951 Å
Deposited: 2022-11-04
Authors: Subramanian, R., KanagaVijayan, D.
PDB entry 8f0w: Tudor Domain of Tumor suppressor p53BP1 with MFP-5956
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-11-04
Authors: The, J., Hong, Z., Dong, A., Headey, S., Gunzburg, M., Doak, B., James, L.I., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Structural Genomics Consortium (SGC)
PDB entry 8f0x: Cryo-EM structure of Kap114 bound to H2A-H2B
Classification: PROTEIN TRANSPORT/STRUCTURAL PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2022-11-04
Authors: Jiou, J., Chook, Y.M.
PDB entry 8f0y: Lipocalin-like Milk protein-1
Classification: LIPID BINDING PROTEIN
Source organism: Diploptera punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-11-04
Authors: Subramanian, R., KanagaVijayan, D., Shantakumar, R.P.S.
PDB entry 8f0z: Structure of the MDM2 P53 binding domain in complex with H101, an all-D Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2022-11-04
Authors: Li, K., Callahan, A.J., Travaline, T.L., Tokareva, O.S., Swiecicki, J.-M., Verdine, G.L., Pentelute, B.L., McGee, J.H.
PDB entry 8f10: Structure of the MDM2 P53 binding domain in complex with H102, an all-D Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2022-11-04
Authors: Li, K., Callahan, A.J., Travaline, T.L., Tokareva, O.S., Swiecicki, J.-M., Verdine, G.L., Pentelute, B.L., McGee, J.H.
PDB entry 8f11: T4 lysozyme with a 2,6-diazaadamantane nitroxide (DZD) spin label
Classification: HYDROLASE
Source organism: Escherichia phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2022-11-04
Authors: Wilson, M.A., Madzelan, P., Rajca, A., Stein, R., Yang, Z.
PDB entry 8f12: Structure of the MDM2 P53 binding domain in complex with H103, an all-D Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2022-11-04
Authors: Li, K., Callahan, A.J., Travaline, T.L., Tokareva, O.S., Swiecicki, J.-M., Verdine, G.L., Pentelute, B.L., McGee, J.H.
PDB entry 8f13: Structure of the MDM2 P53 binding domain in complex with H103, an all-D Helicon Polypeptide, alternative C-terminus
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-11-04
Authors: Li, K., Callahan, A.J., Travaline, T.L., Tokareva, O.S., Swiecicki, J.-M., Verdine, G.L., Pentelute, B.L., McGee, J.H.
PDB entry 8f14: Structure of the STUB1 TPR domain in complex with H201, an all-D Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2022-11-04
Authors: Li, K., Callahan, A.J., Travaline, T.L., Tokareva, O.S., Swiecicki, J.-M., Verdine, G.L., Pentelute, B.L., McGee, J.H.
PDB entry 8f15: Structure of the STUB1 TPR domain in complex with H202, an all-D Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2022-11-04
Authors: Li, K., Callahan, A.J., Travaline, T.L., Tokareva, O.S., Swiecicki, J.-M., Verdine, G.L., Pentelute, B.L., McGee, J.H.
PDB entry 8f16: Structure of the STUB1 TPR domain in complex with H203, an all-D Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2022-11-04
Authors: Li, K., Callahan, A.J., Travaline, T.L., Tokareva, O.S., Swiecicki, J.-M., Verdine, G.L., Pentelute, B.L., McGee, J.H.
PDB entry 8f17: Structure of the STUB1 TPR domain in complex with H204, an all-D Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2022-11-04
Authors: Li, K., Callahan, A.J., Travaline, T.L., Tokareva, O.S., Swiecicki, J.-M., Verdine, G.L., Pentelute, B.L., McGee, J.H.
PDB entry 8f18: Apo KIF20A[1-565] class-2 in complex with a microtubule
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-11-04
Authors: Benoit, M.P.M.H., Asenjo, A.B., Crozet, V., Ranaivoson, F.M., Houdusse, A., Sosa, H.
PDB entry 8f19: Cryo-EM structure of Kap114 bound to Gsp1 (RanGTP)
Classification: PROTEIN TRANSPORT/NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2022-11-04
Authors: Jiou, J., Chook, Y.M.
PDB entry 8f1a: Apo KIF20A[1-565] class-1 in complex with a microtubule
Classification: MOTOR PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-11-04
Authors: Benoit, M.P.M.H., Asenjo, A.B., Crozet, V., Ranaivoson, F.M., Houdusse, A., Sosa, H.
PDB entry 8f1b: Structure of zinc-bound ZrgA deletion 124-184 from Vibrio cholerae
Classification: METAL BINDING PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2022-11-04
Authors: Valencia, D.W., Yukl, E.T.
PDB entry 8f1c: Voltage-gated potassium channel Kv3.1 with novel positive modulator (9M)-9-{5-chloro-6-[(3,3-dimethyl-2,3-dihydro-1-benzofuran-4-yl)oxy]-4-methylpyridin-3-yl}-2-methyl-7,9-dihydro-8H-purin-8-one (compound 4)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2022-11-04
Authors: Chen, Y., Ishchenko, A.
PDB entry 8f1d: Voltage-gated potassium channel Kv3.1 apo
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2022-11-04
Authors: Chen, Y., Ishchenko, A.
PDB entry 8f1e: Cryo-EM structure of Kap114 bound to Gsp1 (RanGTP) and H2A-H2B
Classification: PROTEIN TRANSPORT/STRUCTURAL PROTEIN/NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2022-11-04
Authors: Jiou, J., Chook, Y.M.
PDB entry 8f1f: Structure of K48-linked tri-ubiquitin in complex with cyclic peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-11-05
Authors: Lubkowski, J., Fushman, D., Lemma, B.
PDB entry 8f1g: Crystal structure of human WDR5 in complex with compound WM662
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2022-11-05
Authors: Liu, H.
PDB entry 8f1h: EGFR kinase in complex with TAS6417 (CLN-081)
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-11-05
Authors: Beyett, T.S., Eck, M.J.
PDB entry 8f1i: SigN RNA polymerase early-melted intermediate bound to mismatch fragment dhsU36mm1 (-12T)
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-11-05
Authors: Mueller, A.U., Chen, J., Darst, S.A.
PDB entry 8f1j: SigN RNA polymerase early-melted intermediate bound to mismatch DNA fragment dhsU36mm2 (-12A)
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-11-05
Authors: Mueller, A.U., Chen, J., Darst, S.A.
PDB entry 8f1k: SigN RNA polymerase early-melted intermediate bound to full duplex DNA fragment dhsU36 (-12T)
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-11-05
Authors: Mueller, A.U., Chen, J., Darst, S.A.
PDB entry 8f1s: A benzimidazole (DB1476) sequence-specific recognition of 5'-CGCAAAAAAGCG-3' in A-orientation
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-11-06
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8f1t: Structure of an 18mer DegP cage bound to the client protein hTRF1
Classification: CHAPERONE, HYDROLASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.1 Å
Deposited: 2022-11-06
Authors: Harkness, R.W., Ripstein, Z.A., Di Trani, J.M., Kay, L.E.
PDB entry 8f1u: Structure of a 24mer DegP cage bound to the client protein hTRF1
Classification: CHAPERONE, HYDROLASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.8 Å
Deposited: 2022-11-06
Authors: Harkness, R.W., Ripstein, Z.A., Di Trani, J.M., Kay, L.E.
PDB entry 8f1v: A benzimidazole (DB1476) sequence-specific recognition of 5'-CGCAAAAAAGCG-3' in B-orientation
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-11-06
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8f1w: EGFR(T790M/V948R) kinase in complex with poziotinib
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-11-06
Authors: Beyett, T.S., Eck, M.J.
PDB entry 8f1x: EGFR kinase in complex with mobocertinib (TAK-788)
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-11-06
Authors: Beyett, T.S., Eck, M.J.
PDB entry 8f1y: EGFR kinase in complex with poziotinib
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2022-11-06
Authors: Beyett, T.S., Eck, M.J.
PDB entry 8f1z: EGFR kinase in complex with Bayer #33
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-11-06
Authors: Beyett, T.S., Eck, M.J.
PDB entry 8f20: Structure of an A-tract B-DNA Dodecamer: 5'-CGCAAAAAAGCG-3
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2022-11-06
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8f21: Structure of a 30mer DegP cage bound to the client protein hTRF1
Classification: CHAPERONE, HYDROLASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 14.1 Å
Deposited: 2022-11-06
Authors: Harkness, R.W., Ripstein, Z.A., Di Trani, J.M., Kay, L.E.
PDB entry 8f22: HIV-CA Disulfide linked Hexamer bound to 11l capsid inhibitor.
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-11-06
Authors: Barnett, M.J., Goldstone, D.C.
PDB entry 8f23: The crystal structure of a rationally designed zinc sensor based on maltose binding protein - Apo conformation
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-11-06
Authors: Zhao, Z., Zhou, M., Zemerov, S.d., Marmorstein, R., Dmochowski, I.J.
PDB entry 8f24: Mirror-image RNA octamer containing 2'-OMe-L-uridine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-11-07
Authors: Dantsu, Y., Zhang, W.
PDB entry 8f25: Cryo-EM structure of Lumazine synthase nanoparticle linked to VP8* antigen
Classification: VIRAL PROTEIN
Source organism: Aquifex aeolicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-11-07
Authors: Mangala Prasad, V., Lee, K.K.
PDB entry 8f26: Structure of a 60mer DegP cage bound to the client protein hTRF1
Classification: CHAPERONE, HYDROLASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.7 Å
Deposited: 2022-11-07
Authors: Harkness, R.W., Ripstein, Z.A., Di Trani, J.M., Kay, L.E.
PDB entry 8f27: Mirror-image DNA containing 2'-OMe-L-uridine residue
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-11-07
Authors: Zhang, W., Dantsu, Y.
PDB entry 8f28: Lysozyme Structures from Single-Entity Crystallization Method NanoAC
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-11-07
Authors: Yang, R., Sankaran, B., Ogbonna, E., Wang, G.
PDB entry 8f29: Yeast ATP synthase in conformation-1 at pH 6
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-11-07
Authors: Sharma, S., Patel, H., Luo, M., Mueller, D.M., Liao, M.
PDB entry 8f2a: Human Amylin3 Receptor in complex with Gs and Pramlintide analogue peptide San385 (Cluster 5 conformation)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-11-07
Authors: Cao, J., Sexton, P.M., Wootten, D.L., Radostin, D.
PDB entry 8f2b: Amylin 3 Receptor in complex with Gs and Pramlintide analogue peptide San45
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2022-11-07
Authors: Cao, J., Sexton, P.M., Wootten, D.L., Belousoff, M.J.
PDB entry 8f2c: SARS-CoV-2 Main Protease (Mpro) in Complex with ML3006a
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-11-07
Authors: Westberg, M., Fernandez, D., Lin, M.Z.
PDB entry 8f2d: SARS-CoV-2 Main Protease (Mpro) in Complex with ML4006a
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-11-07
Authors: Westberg, M., Fernandez, D., Lin, M.Z.
PDB entry 8f2e: Crystal Structure of the CoV-Y domain of SARS-CoV-2 Nonstructural Protein 3
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2022-11-07
Authors: Li, Y., Shi, W., Hao, B.
PDB entry 8f2f: NMR solution structure of lambda-MeuKTx-1
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2022-11-07
Authors: Harvey, P.J., Craik, D.J.
PDB entry 8f2g: Crystal structure of Hen Egg White Lysozyme at 0.44 GPa
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-11-08
Authors: Marshall, A.C., Boer, S.A., Turner, G., Moggach, S.A., Bond, C.S., Vrielink, A.
PDB entry 8f2j: Crystal structure of antibody WRAIR-2134 in complex with SARS-CoV-2 receptor binding domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2022-11-08
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8f2k: Structure of yeast F1-ATPase determined with 100 micromolar cruentaren A
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-11-08
Authors: Guo, H., Rubinstein, J.L.
PDB entry 8f2l: Crystal structure of Mycobacterium tuberculosis Homoserine transacetylase in complex with L-Homoserine
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-11-08
Authors: Jayasinghe, Y.P., Ronning, D.R.
PDB entry 8f2m: Phi-29 scaffolding protein bound to intermediate-state MCP
Classification: VIRUS
Source organism: Bacillus phage phi29
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-11-08
Authors: Woodson, M.E., Morais, M.C., Jardine, P.J., Scott, S.D.
PDB entry 8f2n: Phi-29 partially-expanded fiberless prohead
Classification: VIRUS
Source organism: Bacillus phage phi29
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-11-08
Authors: Woodson, M.E., Morais, M.C., Scott, S.D., Choi, K.H., Jardine, P.J., Zhang, W.
PDB entry 8f2o: Phi-29 expanded, DNA-packaged fiberless prohead
Classification: VIRUS
Source organism: Bacillus phage phi29
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-11-08
Authors: Woodson, M.E., Morais, M.C., Jardine, P.J., Zhang, W.
PDB entry 8f2p: Nef SF2 dimerization mutant bound to Hck SH3
Classification: VIRAL PROTEIN
Source organism: HIV-1 M:B_ARV2/SF2; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2022-11-08
Authors: Thomas, C.E., Alvarado, J.J., Smithgall, T.E.
PDB entry 8f2q: Human Parvovirus B19 Nonstructural NS1 Protein NLS bound to Importin Alpha 2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-11-08
Authors: Cross, E.M., Forwood, J.K.
PDB entry 8f2r: Human CCC complex
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2022-11-08
Authors: Healy, M.D., McNally, K.E., Butkovic, R., Chilton, M., Kato, K., Sacharz, J., McConville, C., Moody, E.R.R., Shaw, S., Planelles-Herrero, V.J., Kadapalakere, S.Y., Ross, J., Borucu, U., Palmer, C.S., Chen, K., Croll, T.I., Hall, R.J., Caruana, N.J., Ghai, R., Nguyen, T.H.D., Heesom, K.J., Saitoh, S., Berger, I., Berger-Schaffitzel, C., Williams, T.A., Stroud, D.A., Derivery, E., Collins, B.M., Cullen, P.J.
PDB entry 8f2s: Cryo-EM structure of Torpedo nicotinic acetylcholine receptor in complex with rocuronium, pore-blocked state
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Tetronarce californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-11-08
Authors: Goswami, U., Rahman, M.M., Teng, J., Hibbs, R.E.
PDB entry 8f2t: Antibody Fab directed against SARS-CoV-2 Spike Protein Receptor Binding Domain (RBD)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2022-11-08
Authors: Chen, J.C.-H.
PDB entry 8f2u: Human CCC complex
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2022-11-08
Authors: Healy, M.D., McNally, K.E., Butkovic, R., Chilton, M., Kato, K., Sacharz, J., McConville, C., Moody, E.R.R., Shaw, S., Planelles-Herrero, V.J., Kadapalakere, S.Y., Ross, J., Borucu, U., Palmer, C.S., Chen, K., Croll, T.I., Hall, R.J., Caruana, N.J., Ghai, R., Nguyen, T.H.D., Heesom, K.J., Saitoh, S., Berger, I., Berger-Schaffitzel, C., Williams, T.A., Stroud, D.A., Derivery, E., Collins, B.M., Cullen, P.J.
PDB entry 8f2v: Antibody Fab directed against SARS-CoV-2 Spike Protein Receptor Binding Domain (RBD)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-11-08
Authors: Chen, J.C.-H.
PDB entry 8f2w: Structure of a B-Form Dodecamer: 5'-CGCGAATTCGCG-3
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-11-08
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8f2x: Crystal structure of antibody WRAIR-2123 in complex with SARS-CoV-2 receptor binding domain
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.501 Å
Deposited: 2022-11-08
Authors: Sankhala, R.S., Joyce, G.M.
PDB entry 8f2y: Structure of an alternating AT dodecamer: 5'-CGCGATATCGCG-3
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-11-09
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8f2z: LSD1-CoREST in complex with AW2, short soaking
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-11-09
Authors: Caroli, J., Mattevi, A.
PDB entry 8f30: LSD1-CoREST in complex with AW2, long soaking
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-11-09
Authors: Caroli, J., Mattevi, A.
PDB entry 8f32: ELIC with Propylamine in SMA nanodiscs with 2:1:1 POPC:POPE:POPG
Classification: TRANSPORT PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2022-11-09
Authors: Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.
PDB entry 8f33: ELIC with Propylamine in saposin nanodiscs with 2:1:1 POPC:POPE:POPG
Classification: TRANSPORT PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2022-11-09
Authors: Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.
PDB entry 8f34: ELIC with Propylamine in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG
Classification: TRANSPORT PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2022-11-09
Authors: Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.
PDB entry 8f35: Apo ELIC in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG
Classification: TRANSPORT PROTEIN
Source organism: Dickeya dadantii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2022-11-09
Authors: Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.
PDB entry 8f36: Ubx Homeodomain NMR solution structure
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: SOLUTION NMR
Deposited: 2022-11-09
Authors: Beasley, S.A., Loss, J.W., Mekkaoui, F., Advocate, M.R., Spratt, D.E.
PDB entry 8f37: AbdA Homeodomain NMR Solution Structure
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: SOLUTION NMR
Deposited: 2022-11-09
Authors: Beasley, S.A., Simons, R.A., Advocate, M.R., Mekkaoui, F., Spratt, D.E.
PDB entry 8f38: Cryo-EM structure of X6 COBRA (H1N1) hemagglutinin bound to CR6261 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2022-11-09
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8f39: Yeast ATP synthase in conformation-2, at pH 6
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-11-09
Authors: Sharma, S., Patel, H., Luo, M., Mueller, D.M., Liao, M.
PDB entry 8f3a: HIV-1 gp41 coiled-coil pocket IQN17
Classification: VIRAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-11-09
Authors: Bruun, T.U.J., Tang, S., Fernandez, D., Kim, P.S.
PDB entry 8f3b: HIV-1 gp41 coiled-coil pocket IQN22
Classification: VIRAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-11-09
Authors: Bruun, T.U.J., Tang, S., Fernandez, D., Kim, P.S.
PDB entry 8f3c: Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-11-09
Authors: Porta, J.C., Chauvier, A., Deb, I., Ellinger, E., Frank, A.T., Meze, K., Ohi, M.D., Walter, N.G.
PDB entry 8f3d: 3-methylcrotonyl-CoA carboxylase in filament, beta-subunit centered
Classification: LIGASE
Source organism: Leishmania tarentolae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-11-09
Authors: Hu, J.J., Lee, J.K.J., Liu, Y.T., Yu, C., Huang, L., Afasizheva, I., Afasizhev, R., Zhou, Z.H.
PDB entry 8f3e: Trimer of aminoglycoside efflux pump AcrD
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-11-10
Authors: Zhang, Z.
PDB entry 8f3f: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Hunashal, Y., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3g: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M variant in the penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.59 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3h: Crystal structure of Penicillin Binding Protein 5 (PBP5) S466 insertion variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3i: Crystal structure of Penicillin Binding Protein 5 (PBP5) S466 insertion variant penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3j: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485A variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3k: Anti-CRISPR protein AcrIIC5 inhibits CRISPR-Cas9 by acting as a DNA mimic
Classification: PROTEIN BINDING
Source organism: Neisseria chenwenguii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-11-10
Authors: Shah, M., Sungwon, H., Davidson, A.R., Maxwell, K.L., Moraes, T.F.
PDB entry 8f3l: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485A variant penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3m: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485A variant with S466 insertion apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3n: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485A variant with S466 insertion penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3o: Crystal structure of Penicillin Binding Protein 5 (PBP5) R464A variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Peti, W., Page, R.
PDB entry 8f3p: Crystal structure of Penicillin Binding Protein 5 (PBP5) R464A variant penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3q: Crystal structure of Penicillin Binding Protein 5 (PBP5) Y460A variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Schoenle, M.V., Choy, M.S., Page, R., Peti, W.
PDB entry 8f3r: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M T499I variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3s: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M T499I variant penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3t: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M T499I V629E variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3u: Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M T499I V629E variant penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-11-10
Authors: D'Andrea, E.D., Choy, M.S., Schoenle, M.V., Page, R., Peti, W.
PDB entry 8f3v: Crystal structure of Penicillin Binding Protein 5 (PBP5) PAPAPAP variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-11-10
Authors: Schoenle, M.V., D'Andrea, E.D., Choy, M.S., Peti, W., Page, R.
PDB entry 8f3w: Crystal structure of Penicillin Binding Protein 5 (PBP5) PAPAPAP variant penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-11-10
Authors: Schoenle, M.V., D'Andrea, E.D., Choy, M.S., Peti, W., Page, R.
PDB entry 8f3x: Crystal structure of Penicillin Binding Protein 5 (PBP5) Poly-Gly variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-11-10
Authors: Schoenle, M.V., D'Andrea, E.D., Choy, M.S., Peti, W., Page, R.
PDB entry 8f3y: Crystal structure of Penicillin Binding Protein 5 (PBP5) Poly-Gly variant penicillin bound form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2022-11-10
Authors: Schoenle, M.V., D'Andrea, E.D., Choy, M.S., Peti, W., Page, R.
PDB entry 8f3z: Crystal structure of Penicillin Binding Protein 5 (PBP5) S422A variant apo form from Enterococcus faecium
Classification: ANTIBIOTIC
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-11-10
Authors: Schoenle, M.V., D'Andrea, E.D., Choy, M.S., Peti, W., Page, R.
PDB entry 8f40: Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-11-10
Authors: Zhang, C., Zhao, J., Lu, B., Sha, R., Seeman, N.C., Noinaj, N., Mao, C.
PDB entry 8f41: 3-methylcrotonyl-CoA carboxylase in filament, alpha-subunit centered
Classification: LIGASE
Source organism: Leishmania tarentolae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-11-10
Authors: Hu, J.J., Lee, J.K.J., Liu, Y.T., Yu, C., Huang, L., Afasizheva, I., Afasizhev, R., Zhou, Z.H.
PDB entry 8f42: Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2022-11-10
Authors: Zhang, C., Zhao, J., Lu, B., Sha, R., Seeman, N.C., Noinaj, N., Mao, C.
PDB entry 8f43: HNH Nuclease Domain from G. stearothermophilus Cas9, K597A mutant
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2022-11-10
Authors: D'Ordine, A.M., Belato, H.B., Lisi, G.P., Jogl, G.
PDB entry 8f44: Crystal structure of SARS-CoV-2 3CL protease in complex with a dimethyl phenyl sulfane inhibitor
Classification: HYDROLASE/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-11-10
Authors: Liu, L., Lovell, S., Cooper, A., Battaile, K.P., Dampalla, C.S., Groutas, W.C.
PDB entry 8f45: Crystal structure of SARS-CoV-2 3CL protease in complex with a phenyl dimethyl sulfane inhibitor (cyclopropyl ketoamide warhead)
Classification: Viral Protein, HYDROLASE/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-11-10
Authors: Lovell, S., Cooper, A., Battaile, K.P., Dampalla, C.S., Groutas, W.C.
PDB entry 8f46: Crystal structure of SARS-CoV-2 3CL protease in complex with a dimethyl phenyl sulfane inhibitor (cyano warhead)
Classification: HYDROLASE/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-11-10
Authors: Liu, L., Lovell, S., Cooper, A., Battaile, K.P., Dampalla, C.S., Groutas, W.C.