LiteFold/PDB huggingface dataset:
PDB entry 3vxm: The complex between C1-28 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxn: HLA-A24 in complex with HIV-1 Nef134-10(wt)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxo: HLA-A24 in complex with HIV-1 Nef134-10(2F)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxp: HLA-A24 in complex with HIV-1 Nef134-10(6L)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxq: H27-14 TCR specific for HLA-A24-Nef134-10
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxr: The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(wt) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxs: The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(6L) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxt: T36-5 TCR specific for HLA-A24-Nef134-10
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxu: The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-09-20
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3vxv: Crystal structure of methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence
Classification: HYDROLASE/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-09-21
Authors: Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
PDB entry 3vxw: Crystal structure of Saccharomyces cerevisiae Atg8 complexed with Atg32 AIM
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2012-09-21
Authors: Noda, N.N., Inagaki, F.
PDB entry 3vxx: Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/5mCG sequence
Classification: HYDROLASE/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.204 Å
Deposited: 2012-09-21
Authors: Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
PDB entry 3vy2: N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-09-21
Authors: Takagi, R., Nakanishi, T., Kitamura, M.
PDB entry 3vy5: N33Q mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2012-09-21
Authors: Takagi, R., Nakanishi, T., Kitamura, M.
PDB entry 3vy6: Crystal structure of human pancreatic secretory protein ZG16p with laminaribiose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-09-21
Authors: Kanagawa, M., Yamaguchi, Y.
PDB entry 3vy7: Crystal structure of human pancreatic secretory protein ZG16p with O-(alpha-D-mannosyl)-L-serine
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2012-09-21
Authors: Kanagawa, M., Yamaguchi, Y.
PDB entry 3vy8: Crystal Structure of PorB from Neisseria meningitidis in complex with Cesium ion, space group P63
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2012-09-21
Authors: Kattner, C., Zaucha, J., Jaenecke, F., Zachariae, U., Tanabe, M.
PDB entry 3vy9: Crystal structure of PorB from Neisseria meningitidis in complex with cesium ion, space group H32
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2012-09-21
Authors: Kattner, C., Zaucha, J., Jaenecke, F., Zachariae, U., Tanabe, M.
PDB entry 3vya: W32Y mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-09-22
Authors: Takagi, R., Nakanishi, T., Kitamura, M.
PDB entry 3vyb: Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/hmCG sequence
Classification: HYDROLASE/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-09-22
Authors: Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
PDB entry 3vyc: Crystal structure of unliganded Saccharomyces cerevisiae CRM1 (Xpo1p)
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-09-22
Authors: Saito, N., Matsuura, Y.
PDB entry 3vyd: Human renin in complex with inhibitor 6
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2012-09-24
Authors: Takahashi, M., Hanzawa, H.
PDB entry 3vye: Human renin in complex with inhibitor 7
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-09-24
Authors: Takahashi, M., Matsui, Y., Hanzawa, H.
PDB entry 3vyf: Human renin in complex with inhibitor 9
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-09-24
Authors: Takahashi, M., Hanzawa, H.
PDB entry 3vyg: Crystal structure of Thiocyanate hydrolase mutant R136W
Classification: HYDROLASE
Source organism: Thiobacillus thioparus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2012-09-25
Authors: Yamanaka, Y., Sato, M., Arakawa, T., Namima, S., Hori, S., Ohtaki, A., Noguchi, K., Katayama, Y., Yohda, M., Odaka, M.
PDB entry 3vyh: Crystal structure of aW116R mutant of nitrile hydratase from Pseudonocardia thermophilla
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2012-09-25
Authors: Yamanaka, Y., Sato, M., Arakawa, T., Namima, S., Hori, S., Ohtaki, A., Noguchi, K., Katayama, Y., Yohda, M., Odaka, M.
PDB entry 3vyi: Crystal Structure of a trimeric coiled-coil (I/I-type) assembly domain from the voltage-gated proton channel mutant
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.305 Å
Deposited: 2012-09-25
Authors: Fujiwara, Y., Takeshita, K., Nakagawa, A.
PDB entry 3vyj: Crystal structure of C-type lectin domain of murine dendritic cell inhibitory receptor 2 (apo form)
Classification: CARBOHYDRATE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2012-09-26
Authors: Nagae, M., Yamanaka, K., Hanashima, S., Ikeda, A., Satoh, T., Matsumoto, N., Yamamoto, K., Yamaguchi, Y.
PDB entry 3vyk: Crystal structure of C-type lectin domain of murine dendritic cell inhibitory receptor 2 in complex with N-glycan
Classification: CARBOHYDRATE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-09-26
Authors: Nagae, M., Yamanaka, K., Hanashima, S., Ikeda, A., Satoh, T., Matsumoto, N., Yamamoto, K., Yamaguchi, Y.
PDB entry 3vyl: Structure of L-ribulose 3-epimerase
Classification: ISOMERASE
Source organism: Mesorhizobium loti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-09-27
Authors: Uechi, K., Sakuraba, H., Takata, G.
PDB entry 3vym: Dimeric Hydrogenobacter thermophilus cytochrome c552
Classification: ELECTRON TRANSPORT
Source organism: Hydrogenobacter thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-09-28
Authors: Hayashi, Y., Nagao, S., Osuka, H., Komori, H., Higuchi, Y., Hirota, S.
PDB entry 3vyn: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N55 truncation mutant (resideus 55-408)
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-09-30
Authors: Li, W.J., Li, D.F., Bi, L.J., Wang, D.C.
PDB entry 3vyo: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2 N140 truncation mutant (resideus 140-408)
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-09-30
Authors: Li, W.J., Li, D.F., Bi, L.J., Wang, D.C.
PDB entry 3vyp: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase LdtMt2-N140 adduct with meropenem
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2012-09-30
Authors: Li, W.J., Li, D.F., Bi, L.J., Wang, D.C.
PDB entry 3vyq: Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1
Classification: HYDROLASE/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.525 Å
Deposited: 2012-10-02
Authors: Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
PDB entry 3vyr: Crystal structure of the HypC-HypD complex
Classification: METAL BINDING PROTEIN
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2012-10-02
Authors: Watanabe, S., Miki, K.
PDB entry 3vys: Crystal structure of the HypC-HypD-HypE complex (form I)
Classification: METAL BINDING PROTEIN/TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2012-10-02
Authors: Watanabe, S., Miki, K.
PDB entry 3vyt: Crystal structure of the HypC-HypD-HypE complex (form I inward)
Classification: METAL BINDING PROTEIN/TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2012-10-02
Authors: Watanabe, S., Miki, K.
PDB entry 3vyu: Crystal structure of the HypC-HypD-HypE complex (form II)
Classification: METAL BINDING PROTEIN/TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2012-10-02
Authors: Watanabe, S., Miki, K.
PDB entry 3vyv: Crystal structure of subtilisin NAT at 1.36
Classification: HYDROLASE
Source organism: Bacillus subtilis subsp. natto
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2012-10-03
Authors: Ushijima, H., Fuchita, N., Kajiwara, T., Motoshima, H., Ueno, G., Watanabe, K.
PDB entry 3vyw: Crystal structure of MNMC2 from Aquifex Aeolicus
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2012-10-03
Authors: Shibata, R., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3vyx: Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase (DHX9)
Classification: HYDROLASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2012-10-05
Authors: Yuan, Y.A., Fu, Q.
PDB entry 3vyy: Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9)
Classification: HYDROLASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2012-10-05
Authors: Yuan, Y.A., Fu, Q.
PDB entry 3vz0: Structural insights into cofactor and substrate selection by Gox0499
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-10-09
Authors: Yuan, Y.A., Yuan, Z., Yin, B., Wei, D.
PDB entry 3vz1: Structural insights into substrate and cofactor selelction by sp2771
Classification: OXIDOREDUCTASE
Source organism: Synechococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-10-09
Authors: Yuan, Y.A., Yuan, Z., Yin, B., Wei, D.
PDB entry 3vz2: Structural insights into substrate and cofactor selection by sp2771
Classification: OXIDOREDUCTASE
Source organism: Synechococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-10-09
Authors: Yuan, Y.A., Yuan, Z., Yin, B., Wei, D.
PDB entry 3vz3: Structural insights into substrate and cofactor selection by sp2771
Classification: OXIDOREDUCTASE
Source organism: Synechococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2012-10-09
Authors: Yuan, Y.A., Yuan, Z., Yin, B., Wei, D.
PDB entry 3vz6: Crystal Structure Analysis of the Mini-chaperonines, variant with Gly 184 replaced with Ile and Leu 185 replaced Val and Val 186 replaced with Leu.
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-10-09
Authors: Saijo, S., Sato, T.
PDB entry 3vz7: Crystal Structure Analysis of the mini-chaperonin variant with Pro 187 Gly
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-10-09
Authors: Saijo, S., Sato, T.
PDB entry 3vz8: Crystal Structure Analysis of the Mini-chaperonin variant with Leu 185, Val 186, Pro 187, Arg 188 and Ser 190 replaced with all Gly
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-10-09
Authors: Saijo, S., Sato, T.
PDB entry 3vz9: Crystal structure of the chicken Spc24-Spc25 globular domain
Classification: CELL CYCLE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2012-10-09
Authors: Nishino, T., Fukagawa, T.
PDB entry 3vza: Crystal structure of the chicken Spc24-Spc25 globular domain in complex with CENP-T peptide
Classification: CELL CYCLE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.898 Å
Deposited: 2012-10-09
Authors: Nishino, T., Fukagawa, T.
PDB entry 3vzb: Crystal structure of Sphingosine Kinase 1
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-10-10
Authors: Min, X., Walker, N.P., Wang, Z.
PDB entry 3vzc: Crystal structure of Sphingosine Kinase 1 with inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-10-11
Authors: Min, X., Walker, N.P., Wang, Z.
PDB entry 3vzd: Crystal structure of Sphingosine Kinase 1 with inhibitor and ADP
Classification: TRANSFERASE/INHIBITOR
Source organism: homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-10-11
Authors: Min, X., Walker, N.P., Wang, Z.
PDB entry 3vze: Crystal structure of human pancreatic secretory protein ZG16p with alpha1,3-mannobiose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-10-11
Authors: Kanagawa, M., Yamaguchi, Y.
PDB entry 3vzf: Crystal structure of human pancreatic secretory protein ZG16p with methyl alpha-D-mannopyranoside
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-10-11
Authors: Kanagawa, M., Yamaguchi, Y.
PDB entry 3vzg: Crystal structure of human pancreatic secretory protein ZG16p with O-(alpha-D-mannosyl)-L-threonine
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-10-11
Authors: Kanagawa, M., Yamaguchi, Y.
PDB entry 3vzh: Crystal Structure of CRISPR-associated Protein
Classification: DNA BINDING PROTEIN
Source organism: Streptococcus pyogenes serotype M1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-10-12
Authors: Bae, E., Yoon, K.
PDB entry 3vzi: Crystal Structure of CRISPR-associated Protein
Classification: DNA BINDING PROTEIN
Source organism: Xanthomonas oryzae pv. oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2012-10-12
Authors: Bae, E., Koo, Y.
PDB entry 3vzj: Crystal structure of the Bacillus circulans endo-beta-(1,4)-xylanase (BcX) E172H mutant
Classification: HYDROLASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.406 Å
Deposited: 2012-10-14
Authors: Ludwiczek, M.L., D'Angelo, I., Yalloway, G.N., Okon, M., Nielsen, J.E., Strynadka, N.C., Withers, S.G., McIntosh, L.P.
PDB entry 3vzk: Crystal structure of the Bacillus circulans endo-beta-(1,4)-xylanase (BcX) N35E mutant
Classification: HYDROLASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2012-10-14
Authors: Ludwiczek, M.L., D'Angelo, I., Yalloway, G.N., Okon, M., Nielsen, J.E., Strynadka, N.C., Withers, S.G., McIntosh, L.P.
PDB entry 3vzl: Crystal structure of the Bacillus circulans endo-beta-(1,4)-xylanase (BcX) N35H mutant
Classification: HYDROLASE
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-10-15
Authors: Ludwiczek, M.L., D'Angelo, I., Yalloway, G.N., Okon, M., Nielsen, J.E., Strynadka, N.C., Withers, S.G., McIntosh, L.P.
PDB entry 3vzm: Crystal structure of the Bacillus circulans endo-beta-(1,4)-xylanase (BcX) E172H mutant with Glu78 covalently bonded to 2-deoxy-2-fluoro-xylobiose
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2012-10-15
Authors: Ludwiczek, M.L., D'Angelo, I., Yalloway, G.N., Okon, M., Nielsen, J.E., Strynadka, N.C., Withers, S.G., McIntosh, L.P.
PDB entry 3vzn: Crystal structure of the Bacillus circulans endo-beta-(1,4)-xylanase (BcX) N35E mutant with Glu78 covalently bonded to 2-deoxy-2-fluoro-xylobiose
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2012-10-15
Authors: Ludwiczek, M.L., D'Angelo, I., Yalloway, G.N., Okon, M., Nielsen, J.E., Strynadka, N.C., Withers, S.G., McIntosh, L.P.
PDB entry 3vzo: Crystal structure of the Bacillus circulans endo-beta-(1,4)-xylanase (BcX) N35H mutant with Glu78 covalently bonded to 2-deoxy-2-fluoro-xylobiose
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bacillus circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2012-10-15
Authors: Ludwiczek, M.L., D'Angelo, I., Yalloway, G.N., Okon, M., Nielsen, J.E., Strynadka, N.C., Withers, S.G., McIntosh, L.P.
PDB entry 3vzp: Crystal structure of PhaB from Ralstonia eutropha
Classification: OXIDOREDUCTASE
Source organism: Cupriavidus necator
Experimental method: X-RAY DIFFRACTION
Resolution: 1.792 Å
Deposited: 2012-10-15
Authors: Ikeda, K., Tanaka, Y., Tanaka, I., Yao, M.
PDB entry 3vzq: Crystal structure of Q47L mutant of PhaB from Ralstonia eutropha
Classification: OXIDOREDUCTASE
Source organism: Cupriavidus necator
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-10-15
Authors: Ikeda, K., Tanaka, Y., Tanaka, I., Yao, M.
PDB entry 3vzr: Crystal structure of T173S mutant of PhaB from Ralstonia eutropha
Classification: OXIDOREDUCTASE
Source organism: Cupriavidus necator
Experimental method: X-RAY DIFFRACTION
Resolution: 2.901 Å
Deposited: 2012-10-15
Authors: Ikeda, K., Tanaka, Y., Tanaka, I., Yao, M.
PDB entry 3vzs: Crystal structure of PhaB from Ralstonia eutropha in complex with Acetoacetyl-CoA and NADP
Classification: OXIDOREDUCTASE
Source organism: Cupriavidus necator
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2012-10-15
Authors: Ikeda, K., Tanaka, Y., Tanaka, I., Yao, M.
PDB entry 3vzt: Crystal Structure of outer membrane protein PorB from Neisseria meningitidis
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-10-15
Authors: Tanabe, M., Iverson, T.M.
PDB entry 3vzu: Crystal Structure of outer membrane protein PorB from Neisseria meningitidis in complex with AMP-PNP
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2012-10-15
Authors: Tanabe, M., Iverson, T.M.
PDB entry 3vzv: Crystal structure of human mdm2 with a dihydroimidazothiazole inhibitor
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-10-16
Authors: Shimizu, H., Katakura, S., Miyazaki, M., Naito, H., Sugimoto, Y., Kawato, H., Okayama, T., Soga, T.
PDB entry 3vzw: Crystal Structure of outer membrane protein PorB from Neisseria meningitidis in complex with galactose
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2012-10-17
Authors: Tanabe, M., Iverson, T.M.
PDB entry 3vzx: Crystal structure of PcrB from bacillus subtilis subap. subtilis str. 168
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2012-10-17
Authors: Ren, F., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Chan, H.C., Liu, Y.L., Wang, K., Chen, C.C., Pang, X., He, M., Li, Y., Oldfield, E., Guo, R.T.
PDB entry 3vzy: Crystal structure of PcrB complexed with G1P from bacillus subtilis subap. subtilis str. 168
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2012-10-17
Authors: Ren, F., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Chan, H.C., Liu, Y.L., Wang, K., Chen, C.C., Pang, X., He, M., Li, Y., Oldfield, E., Guo, R.T.
PDB entry 3vzz: Crystal structure of PcrB complexed with FsPP from bacillus subtilis subap. subtilis str. 168
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2012-10-17
Authors: Ren, F., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Chan, H.C., Liu, Y.L., Wang, K., Chen, C.C., Pang, X., He, M., Li, Y., Oldfield, E., Guo, R.T.
PDB entry 3w00: Crystal structure of PcrB complexed with G1P and FsPP from bacillus subtilis subap. subtilis str. 168
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-10-17
Authors: Ren, F., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Chan, H.C., Liu, Y.L., Wang, K., Chen, C.C., Pang, X., He, M., Li, Y., Oldfield, E., Guo, R.T.
PDB entry 3w01: Crystal structure of PcrB complexed with PEG from Staphylococcus aureus subsp. aureus Mu3
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2012-10-17
Authors: Ren, F., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Chan, H.C., Liu, Y.L., Wang, K., Chen, C.C., Pang, X., He, M., Li, Y., Oldfield, E., Guo, R.T.
PDB entry 3w02: Crystal structure of PcrB complexed with SO4 from Staphylococcus aureus subsp. aureus Mu3
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2012-10-17
Authors: Ren, F., Feng, X., Ko, T.P., Huang, C.H., Hu, Y., Chan, H.C., Liu, Y.L., Wang, K., Chen, C.C., Pang, X., He, M., Li, Y., Oldfield, E., Guo, R.T.
PDB entry 3w03: XLF-XRCC4 complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 8.492 Å
Deposited: 2012-10-17
Authors: Wu, Q., Ochi, T., Matak-Vinkovic, D., Robinson, C.V., Chirgadze, D.Y., Blundell, T.L.
PDB entry 3w04: Crystal structure of Oryza sativa DWARF14 (D14)
Classification: HYDROLASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2012-10-19
Authors: Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.
PDB entry 3w05: Crystal structure of Oryza sativa DWARF14 (D14) in complex with PMSF
Classification: SIGNALING PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2012-10-19
Authors: Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.
PDB entry 3w06: Crystal structure of Arabidopsis thaliana DWARF14 Like (AtD14L)
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2012-10-19
Authors: Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.
PDB entry 3w07: Atomic resolution structure of orotidine 5'-monophosphate decarboxylase from Methanothermobacter thermoautotrophicus bound with UMP.
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2012-10-22
Authors: Fujihashi, M., Pai, E.F., Miki, K.
PDB entry 3w08: Crystal structure of aldoxime dehydratase
Classification: LYASE
Source organism: Pseudomonas chlororaphis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-10-24
Authors: Hashimoto, H., Nomura, J., Hashimoto, Y., Oinuma, K.I., Wada, K., Hishiki, A., Hara, K., Kobayashi, M.
PDB entry 3w09: Influenza virus neuraminidase subtype N9 (TERN) complexed with 2,3-dif guanidino-neu5ac2en inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-10-25
Authors: Streltsov, V.A.
PDB entry 3w0a: Crystal Structure Analysis of Vitamin D receptor
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-10-25
Authors: Itoh, S., Iijima, S.
PDB entry 3w0c: Crystal Structure Analysis of Vitamin D receptor
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-10-29
Authors: Itoh, S., Iijima, S.
PDB entry 3w0d: Structure of elastase inhibitor AFUEI (cyrstal form I)
Classification: HYDROLASE INHIBITOR
Source organism: Aspergillus fumigatus Af293
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-10-29
Authors: Imada, K., Sakuma, M., Okumura, Y., Ogawa, K., Nikai, T., Homma, M.
PDB entry 3w0e: Structure of elastase inhibitor AFUEI (crystal form II)
Classification: HYDROLASE INHIBITOR
Source organism: Aspergillus fumigatus Af293
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-10-29
Authors: Imada, K., Sakuma, M., Okumura, Y., Ogawa, K., Nikai, T., Homma, M.
PDB entry 3w0f: Crystal structure of mouse Endonuclease VIII-LIKE 3 (mNEIL3)
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-10-30
Authors: Liu, M., Imamura, K., Averill, A.M., Wallace, S.S., Doublie, S.
PDB entry 3w0g: Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal Ligands
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2012-10-30
Authors: Shimizu, T., Asano, L., Kuwabara, N., Ito, I., Waku, T., Yanagisawa, J., Miyachi, H.
PDB entry 3w0h: Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal Ligands
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-10-30
Authors: Shimizu, T., Asano, L., Kuwabara, N., Ito, I., Waku, T., Yanagisawa, J., Miyachi, H.
PDB entry 3w0i: Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal Ligands
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-10-30
Authors: Shimizu, T., Asano, L., Kuwabara, N., Ito, I., Waku, T., Yanagisawa, J., Miyachi, H.
PDB entry 3w0j: Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal Ligands
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2012-10-30
Authors: Shimizu, T., Asano, L., Kuwabara, N., Ito, I., Waku, T., Yanagisawa, J., Miyachi, H.
PDB entry 3w0k: Crystal Structure of a glycoside hydrolase
Classification: HYDROLASE
Source organism: Caldanaerobius polysaccharolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2012-10-31
Authors: Oyama, T., Nakamura, H., Morikawa, K., Cann, I.K.O.
PDB entry 3w0l: The crystal structure of Xenopus Glucokinase and Glucokinase Regulatory Protein complex
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2012-10-31
Authors: Choi, J.M., Seo, M.H., Kyeong, H.H., Kim, E., Kim, H.S.
PDB entry 3w0m: Crystal structure of a thermostable mutant of aminoglycoside phosphotransferase APH(4)-Ia, apo form
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-11-02
Authors: Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
PDB entry 3w0n: Crystal structure of a thermostable mutant of aminoglycoside phosphotransferase APH(4)-Ia, ternary complex with AMP-PNP and hygromycin B
Classification: TRANSFERASE/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-11-02
Authors: Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
PDB entry 3w0o: Crystal structure of a thermostable mutant of aminoglycoside phosphotransferase APH(4)-Ia, ternary complex with ADP and hygromycin B
Classification: TRANSFERASE/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-11-02
Authors: Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
PDB entry 3w0p: Crystal structure of a thermostable mutant of aminoglycoside phosphotransferase APH(4)-Ia (D198A), ternary complex with ADP and hygromycin B
Classification: TRANSFERASE/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-11-02
Authors: Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
PDB entry 3w0q: Crystal structure of a thermostable mutant of aminoglycoside phosphotransferase APH(4)-Ia (N203A), ternary complex with AMP-PNP and hygromycin B
Classification: TRANSFERASE/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-11-02
Authors: Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
PDB entry 3w0r: Crystal structure of a thermostable mutant of aminoglycoside phosphotransferase APH(4)-Ia (N202A), ternary complex with AMP-PNP and hygromycin B
Classification: TRANSFERASE/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-11-02
Authors: Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
PDB entry 3w0s: Crystal structure of aminoglycoside phosphotransferase APH(4)-Ia, ternary complex with AMP-PNP and hygromycin B
Classification: TRANSFERASE/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2012-11-02
Authors: Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
PDB entry 3w0t: Human Glyoxalase I with an N-hydroxypyridone derivative inhibitor
Classification: LYASE/LYASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.351 Å
Deposited: 2012-11-02
Authors: Fukami, T.A., Irie, M., Matsuura, T.
PDB entry 3w0u: human Glyoxalase I with an N-hydroxypyridone inhibitor
Classification: LYASE/LYASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-11-02
Authors: Fukami, T.A., Irie, M., Matsuura, T.
PDB entry 3w0w: The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide in space group P212121
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.603 Å
Deposited: 2012-11-05
Authors: Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.
PDB entry 3w0y: Crystal Structure Analysis of Vitamin D receptor
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2012-11-05
Authors: Itoh, S., Iijima, S.
PDB entry 3w10: Aurora kinase A complexed to pyrazole aminoquinoline I
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-11-06
Authors: Oliveira, T.M., Kairies, N.A., Engh, R.A.
PDB entry 3w11: Insulin receptor ectodomain construct comprising domains L1-CR in complex with human insulin, Alpha-CT peptide(704-719) and FAB 83-7
Classification: HORMONE/HORMONE RECEPTOR/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2012-11-06
Authors: Lawrence, M.C., Smith, B.J.
PDB entry 3w12: Insulin receptor ectodomain construct comprising domains L1-CR in complex with high-affinity insulin analogue [D-PRO-B26]-DTI-NH2, alpha-CT peptide(704-719) and FAB 83-7
Classification: HORMONE RECEPTOR/HORMONE/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.301 Å
Deposited: 2012-11-06
Authors: Lawrence, M.C., Smith, B.J., Brzozowsk, A.M.
PDB entry 3w13: Insulin receptor ectodomain construct comprising domains L1-CR in complex with high-affinity insulin analogue [D-PRO-B26]-DTI-NH2, alphact peptide(693-719) and FAB 83-7
Classification: HORMONE RECEPTOR/HORMONE/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.303 Å
Deposited: 2012-11-06
Authors: Lawrence, M.C., Smith, B.J., Brzozowski, A.M.
PDB entry 3w15: Structure of peroxisomal targeting signal 2 (PTS2) of Saccharomyces cerevisiae 3-ketoacyl-CoA thiolase in complex with Pex7p and Pex21p
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2012-11-06
Authors: Pan, D., Nakatsu, T., Kato, H.
PDB entry 3w16: Structure of Aurora kinase A complexed to pyrazole-aminoquinoline inhibitor III
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2012-11-07
Authors: Oliveira, T.M., Kairies, N.A., Engh, R.A.
PDB entry 3w18: Structure of Aurora kinase A complexed to benzoimidazole-indazole inhibitor XIII
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2012-11-09
Authors: Oliveira, T.M., Kairies, N.A., Engh, R.A.
PDB entry 3w19: Potent HIV fusion inhibitor CP32M-2
Classification: MEMBRANE PROTEIN/INHIBITOR
Experimental method: X-RAY DIFFRACTION
Resolution: 1.278 Å
Deposited: 2012-11-13
Authors: Yao, X., Waltersperger, S., Wang, M.T., Cui, S.
PDB entry 3w1a: Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-halogenated orotate derivatives
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2012-11-13
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1b: Crystal Structure of Human DNA ligase IV-Artemis Complex (Mercury Derivative)
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-11-14
Authors: Ochi, T., Blundell, T.L.
PDB entry 3w1c: Structure of a pressure sensitive YFP variant YFP-G1
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2012-11-14
Authors: Imada, K., Yoshizawa, K., Kinoshita, M., Watanabe, T.M.
PDB entry 3w1d: Structure of a pressure sensitive YFP variant YFP-G3
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2012-11-14
Authors: Imada, K., Yoshizawa, K., Kinoshita, M., Watanabe, T.M.
PDB entry 3w1e: Structure of FlgT, a flagellar basal body component protein
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-11-14
Authors: Terashima, H., Sakuma, M., Homma, M., Imada, K.
PDB entry 3w1f: Crystal structure of Human MPS1 catalytic domain in complex with 5-(5-ethoxy-6-(1-methyl-1H-pyrazol-4-yl)-1H-indazol-3-yl)-2-methylbenzenesulfonamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2012-11-14
Authors: Kusakabe, K., Ide, N., Daigo, Y., Tachibana, Y., Itoh, T., Yamamoto, T., Hashizume, H., Hato, Y., Higashino, K., Okano, Y., Sato, Y., Inoue, M., Iguchi, M., Kanazawa, T., Ishioka, Y., Dohi, K., Kido, Y., Sakamoto, S., Yasuo, K., Maeda, M., Higaki, M., Ueda, K., Yoshizawa, H., Baba, Y., Shiota, T., Murai, H., Nakamura, Y.
PDB entry 3w1g: Crystal Structure of Human DNA ligase IV-Artemis Complex (Native)
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2012-11-15
Authors: Ochi, T., Blundell, T.L.
PDB entry 3w1h: Crystal structure of the selenocysteine synthase SelA from Aquifex aeolicus
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.893 Å
Deposited: 2012-11-15
Authors: Itoh, Y., Sekine, S., Yokoyama, S.
PDB entry 3w1i: Crystal structure of the N-terminal truncated selenocysteine synthase SelA
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.192 Å
Deposited: 2012-11-15
Authors: Itoh, Y., Sekine, S., Yokoyama, S.
PDB entry 3w1j: Crystal structure of the N-terminal truncated selenocysteine synthase SelA in complex with thiosulfate
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.252 Å
Deposited: 2012-11-15
Authors: Itoh, Y., Sekine, S., Yokoyama, S.
PDB entry 3w1k: Crystal structure of the selenocysteine synthase SelA and tRNASec complex
Classification: TRANSFERASE/RNA
Source organism: Aquifex aeolicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 7.5 Å
Deposited: 2012-11-15
Authors: Itoh, Y., Sekine, S., Yokoyama, S.
PDB entry 3w1l: Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-chloroorotate
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2012-11-16
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1m: Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-bromoorotate
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2012-11-16
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A.
PDB entry 3w1n: Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-iodoorotate
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2012-11-19
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1o: Neisseria DNA mimic protein DMP12
Classification: PROTEIN BINDING
Source organism: Neisseria meningitidis MC58
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2012-11-19
Authors: Wang, H.C., Ko, T.P., Wu, M.L., Wang, A.H.J.
PDB entry 3w1p: Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-ethenyl-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2012-11-19
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1q: Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with NL-2
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2012-11-20
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1r: Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-045a
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2012-11-20
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1s: Crystal structure of Saccharomyces cerevisiae Atg12-Atg5 conjugate bound to the N-terminal domain of Atg16
Classification: LIGASE
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2012-11-20
Authors: Noda, N.N., Fujioka, Y., Hanada, T., Ohsumi, Y., Inagaki, F.
PDB entry 3w1t: Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-095
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2012-11-21
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1u: Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-111
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2012-11-21
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1v: Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE from Staphylococcus aureus in complex with inihibitor
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2012-11-21
Authors: Miyafusa, T., Caaveiro, J.M., Tanaka, Y., Tsumoto, K.
PDB entry 3w1w: Protein-drug complex
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.006 Å
Deposited: 2012-11-21
Authors: Ishii, R., Gupta, V., Yamaguchi, Y., Handa, H., Nureki, O.
PDB entry 3w1x: Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-121
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2012-11-22
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
PDB entry 3w1y: Crystal structure of T brucei ATG8.2 in complex with E coli S10
Classification: TRANSPORT PROTEIN/RIBOSOMAL PROTEIN
Source organism: Escherichia coli; Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2012-11-23
Authors: Yuan, Y.A., Wang, C.
PDB entry 3w1z: Heat shock protein 16.0 from Schizosaccharomyces pombe
Classification: CHAPERONE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2012-11-26
Authors: Hanazono, Y., Takeda, K., Akiyama, N., Aikawa, Y., Miki, K.
PDB entry 3w20: Crystal Structure of a Novel N-Substituted L-Amino Acid Dioxygenase from Burkholderia ambifaria AMMD
Classification: OXIDOREDUCTASE
Source organism: Burkholderia ambifaria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2012-11-26
Authors: Qin, H.M., Miyakawa, T., Jia, M.Z., Nakamura, A., Ohtsuka, J., Xue, Y.L., Kawashima, T., Kasahara, T., Hibi, M., Ogawa, J., Tanokura, M.
PDB entry 3w21: Crystal Structure of a Novel N-Substituted L-Amino Acid Dioxygenase in complex with alpha-KG from Burkholderia ambifaria AMMD
Classification: OXIDOREDUCTASE
Source organism: Burkholderia ambifaria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2012-11-26
Authors: Qin, H.M., Miyakawa, T., Jia, M.Z., Nakamura, A., Ohtsuka, J., Xue, Y.L., Kawashima, T., Kasahara, T., Hibi, M., Ogawa, J., Tanokura, M.
PDB entry 3w22: Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-125
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2012-11-26
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Matsuoka, S., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.