LiteFold/PDB huggingface dataset:
PDB entry 8svf: BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Classification: NUCLEAR PROTEIN/DNA/RNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-05-16
Authors: Thomas, J.F., Valencia-Sanchez, M.I., Armache, K.-J.
PDB entry 8svg: Ubiquitin variant i53 in complex with 53BP1 Tudor domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2023-05-16
Authors: Holden, J.K., Partridge, J.R., Wibowo, A.S., Mulichak, A.
PDB entry 8svh: Ubiquitin variant i53 mutant L67R bound to 53BP1 Tudor Domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2023-05-16
Authors: Holden, J.K., Partridge, J.R., Wibowo, A.S., Mulichak, A.
PDB entry 8svi: Ubiquitin variant i53:Mutant L67H with 53BP1 Tudor domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-05-16
Authors: Partridge, J.R., Holden, J.K., Wibowo, A.S., Mulichak, A.
PDB entry 8svj: Ubiquitin variant i53: mutant VHH with 53BP1 Tudor domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-05-16
Authors: Holden, J., Partridge, J.R., Wibowo, A.S., Mulichak, A.
PDB entry 8svk: Crystal structure of Bax D71N core domain BH3-groove dimer
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-05-16
Authors: Miller, M.S., Czabotar, P.E., Colman, P.M.
PDB entry 8svl: Plasmodium falciparum M1 aminopeptidase bound to MMV1557817
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.504 Å
Deposited: 2023-05-17
Authors: McGowan, S., Drinkwater, N.
PDB entry 8svm: Plasmodium falciparum M17 aminopeptidase bound to MMV1557817
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-05-17
Authors: McGowan, S., Drinkwater, N.
PDB entry 8svn: Crystal structure of the apo form of pregnane X receptor ligand binding domain
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svo: Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-310
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svp: Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-278
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svq: Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-312
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svr: Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-326
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svs: Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-328
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svt: Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-331
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svu: Crystal structure of the L428V mutant of pregnane X receptor ligand binding domain in apo form
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svx: Crystal structure of the L428V mutant of pregnane X receptor ligand binding domain in complex with SJPYT-331
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-05-17
Authors: Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.
PDB entry 8svy: MBP-Mcl1 in complex with ligand 10
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-05-17
Authors: Miller, B.R., Shaffer, P.
PDB entry 8svz: Structure of the Francisella response regulator KdpE receiver domain
Classification: TRANSCRIPTION
Source organism: Francisella tularensis subsp. novicida U112
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-05-17
Authors: Milton, M.E., Cavanagh, J.
PDB entry 8sw0: Puromycin sensitive aminopeptidase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2023-05-17
Authors: Rodgers, D.W., Sampath, S.
PDB entry 8sw1: Puromycin-sensitive aminopeptidase with bound peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.65 Å
Deposited: 2023-05-17
Authors: Rodgers, D.W., Madabushi, S.
PDB entry 8sw2: Porous framework formed by assembly of a bipyridyl-conjugated helical peptide
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-05-17
Authors: Hess, S.S., Nguyen, A.I.
PDB entry 8sw3: BG505 GT1.1 SOSIP in complex with NHP Fabs 12C11 and RM20A3
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-05-17
Authors: Zhang, S., Torres, J.L., Ozorowski, G., Ward, A.B.
PDB entry 8sw4: BG505 GT1.1 SOSIP in complex with NHP Fabs 21N13, 21M20 and RM20A3
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-05-17
Authors: Ozorowski, G., Torres, J.L., Zhang, S., Ward, A.B.
PDB entry 8sw5: Protein Phosphatase 1 in complex with PP1-specific Phosphatase targeting peptide (PhosTAP) version 1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-05-17
Authors: Choy, M.S., Peti, W., Page, R.
PDB entry 8sw6: Protein Phosphatase 1 in complex with PP1-specific Phosphatase targeting peptide (PhosTAP) version 3
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-05-17
Authors: Choy, M.S., Peti, W., Page, R.
PDB entry 8sw7: BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody FP1
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2023-05-17
Authors: Pratap, P.P., Antansijevic, A., Ozorowski, G., Ward, A.B.
PDB entry 8sw8: Crystal Structure of HaloTag7 bound to JF669-HaloTag ligand
Classification: HYDROLASE
Source organism: Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-05-17
Authors: Farrants, H., Schreiter, E.R.
PDB entry 8sw9: Plasmodium falciparum M17 (A460S) mutant
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-05-17
Authors: McGowan, S., Suraweera, C., Drinkwater, N.
PDB entry 8swa: Crystal structure of the human S-adenosylmethionine synthetase 1 in complex with SAM and PPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.999 Å
Deposited: 2023-05-18
Authors: Bruemmer, K.J., Pham, V.N., Toh, J.D.W.
PDB entry 8swb: RNase H complex with streopure ASO and RNA
Classification: HYDROLASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-05-18
Authors: Cho, Y.-J., Iwamoto, N.
PDB entry 8swc: RNase H complex with ASO (OOO) and RNA
Classification: HYDROLASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2023-05-18
Authors: Cho, Y.-J., Iwamoto, N.
PDB entry 8swd: Crystal Structure of CiaD from Campylobacter jejuni (C-terminal fragment)
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-05-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8swe: FGFR2 Kinase Domain Bound to Reversible Inhibitor Cmpd 3
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2023-05-18
Authors: Valverde, R., Foster, L.
PDB entry 8swf: Cryo-EM structure of NLRP3 open octamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-05-18
Authors: Yu, X., Matico, R.E., Miller, R., Schoubroeck, B.V., Grauwen, K., Suarez, J., Pietrak, B., Haloi, N., Yin, Y., Tresadern, G.J., Perez-Benito, L., Lindahl, E., Bottelbergs, A., Oehlrich, D., Opdenbosch, N.V., Sharma, S.
PDB entry 8swg: RNA duplex bound with GpppA dinucleotide ligand
Classification: RNA
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-05-18
Authors: Zhang, W., Dantsu, Y.
PDB entry 8swh: Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-05-18
Authors: Bangaru, B., Ward, A.
PDB entry 8swi: Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (1-12)peptide
Classification: CELL INVASION
Source organism: Legionella pneumophila subsp. pneumophila; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-05-18
Authors: Xu, C., Chung, I.Y.W., Cygler, M.
PDB entry 8swj: Co-crystal structure of 53BP1 tandem Tudor domains in complex with UNC8531
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-05-18
Authors: Zeng, H., Dong, A., Shell, D.J., Foley, C., Pearce, K.H., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 8swk: Cryo-EM structure of NLRP3 closed hexamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.32 Å
Deposited: 2023-05-18
Authors: Yu, X., Matico, R.E., Miller, R., Schoubroeck, B.V., Grauwen, K., Suarez, J., Pietrak, B., Haloi, N., Yin, Y., Tresadern, G.J., Perez-Benito, L., Lindahl, E., Bottelbergs, A., Oehlrich, D., Opdenbosch, N.V., Sharma, S.
PDB entry 8swl: Substrate free structure of cytochrome P450 CYP105Q4 from mycobacterium marinum
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium marinum ATCC BAA-535
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2023-05-19
Authors: Mohamed, H.A., Bruning, J.B., Bell, S.G.
PDB entry 8swm: Crystal structure of Campylobacter jejuni ketol-acid reductoisomerase in complex with 2-acetolactate
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni subsp. jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-05-19
Authors: Lin, X., Lonhienne, T., Guddat, L.W.
PDB entry 8swn: Bovine multidrug resistance protein 4 (MRP4) E1202Q mutant bound to ATP in MSP lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-05-19
Authors: Pourmal, S., Stroud, R.M.
PDB entry 8swo: GpppA dinucleotide ligand binding to RNA UC template
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-05-19
Authors: Zhang, W., Dantsu, Y.
PDB entry 8swp: Structure of K. lactis PNP bound to hypoxanthine
Classification: TRANSFERASE
Source organism: Kluyveromyces lactis NRRL Y-1140
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-05-19
Authors: Fedorov, E., Ghosh, A.
PDB entry 8swq: Structure of K. lactis PNP bound to transition state analog DADMe-IMMUCILLIN H and sulfate
Classification: TRANSFERASE
Source organism: Kluyveromyces lactis NRRL Y-1140
Experimental method: X-RAY DIFFRACTION
Resolution: 1.979 Å
Deposited: 2023-05-19
Authors: Fedorov, E., Ghosh, A.
PDB entry 8swr: Structure of K. lactis PNP S42E variant bound to transition state analog DADMe-IMMUCILLIN G and sulfate
Classification: TRANSFERASE
Source organism: Kluyveromyces lactis NRRL Y-1140
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-05-19
Authors: Fedorov, E., Ghosh, A.
PDB entry 8sws: Structure of K. lactis PNP S42E-H98R variant bound to transition state analog DADMe-IMMUCILLIN G and sulfate
Classification: TRANSFERASE
Source organism: Kluyveromyces lactis NRRL Y-1140
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-05-19
Authors: Fedorov, E., Ghosh, A.
PDB entry 8swt: Structure of Bacteroides fragilis PNP bound to transition state analog IMMUCILLIN H and sulfate
Classification: TRANSFERASE
Source organism: Bacteroides fragilis NCTC 9343
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-05-19
Authors: Fedorov, E., Ghosh, A.
PDB entry 8swu: Structure of Clostridium perfringens PNP bound to transition state analog IMMUCILLIN H and sulfate
Classification: TRANSFERASE
Source organism: Clostridium perfringens ATCC 13124
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-05-19
Authors: Fedorov, E., Ghosh, A.
PDB entry 8swv: BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody IF1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-05-19
Authors: Pratap, P.P., Antansijevic, A., Ozorowski, G., Ward, A.B.
PDB entry 8sww: BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody IF3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-05-19
Authors: Pratap, P.P., Antansijevic, A., Ward, A.B.
PDB entry 8swx: BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody Base4
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-05-19
Authors: Pratap, P.P., Antansijevic, A., Ward, A.B.
PDB entry 8swy: PARP4 ART domain bound to NADH
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-05-19
Authors: Frigon, L., Pascal, J.M.
PDB entry 8swz: PARP4 ART domain bound to EB47
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-05-19
Authors: Frigon, L., Pascal, J.M.
PDB entry 8sx0: Bordetella filamentous hemagglutinin (FhaB) C-terminal domain
Classification: TOXIN
Source organism: Bordetella pertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-05-19
Authors: Cuthbert, B.J., Goulding, C.W., Hayes, C.S., Costello, M.S.
PDB entry 8sx1: PARP4 catalytic domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.2 Å
Deposited: 2023-05-19
Authors: Frigon, L., Pascal, J.M.
PDB entry 8sx2: PARP4 catalytic domain bound to EB47
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-05-19
Authors: Frigon, L., Pascal, J.M.
PDB entry 8sx3: 10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-05-19
Authors: Huang, J., Ozorowski, G., Ward, A.B.
PDB entry 8sx4: Crystal Structure of eIF4e in complex with Compound 7n
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.986 Å
Deposited: 2023-05-19
Authors: Meagher, J.L., Stuckey, J.A.
PDB entry 8sx5: GpppA dinucleotide binding to RNA CU template
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-05-19
Authors: Zhang, W., Dantsu, Y.
PDB entry 8sx6: RNA duplex bound with GMP and AMP monomers
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-05-19
Authors: Zhang, W., Dantsu, Y.
PDB entry 8sx7: Bovine multidrug resistance protein 4 (MRP4) bound to DHEA-S in MSP lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-05-20
Authors: Pourmal, S., Stroud, R.M.
PDB entry 8sx8: Bovine multidrug resistance protein 4 (MRP4) bound to prostaglandin E1 in MSP lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-05-20
Authors: Pourmal, S., Stroud, R.M.
PDB entry 8sx9: Inward-facing narrow conformation of bovine multidrug resistance protein 4 (MRP4) in MSP lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-05-20
Authors: Pourmal, S., Stroud, R.M.
PDB entry 8sxa: Inward-facing wide conformation of bovine multidrug resistance protein 4 (MRP4) in MSP lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-05-20
Authors: Pourmal, S., Stroud, R.M.
PDB entry 8sxb: Bovine multidrug resistance protein 4 (MRP4) bound to prostaglandin E2 in MSP lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Bos indicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-05-20
Authors: Pourmal, S., Stroud, R.M.
PDB entry 8sxc: Crystal Structure of Fluorescent Protein Fusion Red 2
Classification: FLUORESCENT PROTEIN
Source organism: Entacmaea quadricolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-05-21
Authors: Pletnev, S., Pletneva, N., Pletnev, V.
PDB entry 8sxd: Campylobacter jejuni keto-acid reductoisomerase in complex with intermediate and NADP+
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-05-21
Authors: Lin, X., Lonhienne, T., Guddat, L.W.
PDB entry 8sxe: Structure of the C-terminal protease CtpA-LbcA complex of Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Escherichia coli BL21(DE3); Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2023-05-22
Authors: Hsu, H.-C., Li, H.
PDB entry 8sxf: The C-terminal protease CtpA-LbcA complex of pseudomonas aeruginosa with the TPR at the high position
Classification: HYDROLASE
Source organism: Escherichia coli BL21(DE3); Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2023-05-22
Authors: Hsu, H.-C., Li, H.
PDB entry 8sxg: The C-terminal protease CtpA-LbcA complex of pseudomonas aeruginosa with the TPR at the low position
Classification: HYDROLASE
Source organism: Escherichia coli BL21(DE3); Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2023-05-22
Authors: Hsu, H.-C., Li, H.
PDB entry 8sxh: Structure of the C-terminal protease CtpA-LbcA complex of Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Escherichia coli BL21(DE3); Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2023-05-22
Authors: Hsu, H.-C., Li, H.
PDB entry 8sxi: CH505 Disulfide Stapled SOSIP Bound to b12 Fab
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-05-22
Authors: Henderson, R.
PDB entry 8sxj: CH505 Disulfide Stapled SOSIP Bound to CH235.12 Fab
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-05-22
Authors: Henderson, R.
PDB entry 8sxl: RNA UU template binding to AMP monomer
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-05-22
Authors: Zhang, W., Dantsu, Y.
PDB entry 8sxm: NMR structure of the ZNF750 zinc finger domain, Z*
Classification: METAL BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-05-22
Authors: Rua, A.J., Alexandrescu, A.T.
PDB entry 8sxn: Structure of NLRP3 and NEK7 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2023-05-22
Authors: Yu, X., Matico, R.E., Miller, R., Schoubroeck, B.V., Grauwen, K., Suarez, J., Pietrak, B., Haloi, N., Yin, Y., Tresadern, G.J., Perez-Benito, L., Lindahl, E., Bottelbergs, A., Oehlrich, D., Opdenbosch, N.V., Sharma, S.
PDB entry 8sxo: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) H164I Mutant
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2023-05-23
Authors: Kohaal, N., Lewandowski, E.M., Wang, J., Chen, Y.
PDB entry 8sxp: Crystal structure of long neurotoxin from the venom of the king cobra (3FTx-L15) in complex with Fab of broadly neutralizing antibody 95Mat5
Classification: TOXIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Ophiophagus hannah
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-05-23
Authors: Nguyen, T.K.Y.
PDB entry 8sxq: Crystal structure of Sel-1 repeat protein LceB from Legionella pneumophila
Classification: UNKNOWN FUNCTION
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-05-23
Authors: Penner, T.V., Prehna, G.
PDB entry 8sxr: Crystal structure of SARS-CoV-2 Mpro with C5a
Classification: VIRAL PROTEIN, Hydrolase
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.114 Å
Deposited: 2023-05-23
Authors: Worrall, L.J., Kenward, C., Lee, J., Strynadka, N.C.J.
PDB entry 8sxs: Crystal structure of a Nudix hydrolase effector from Magnaporthe oryzae
Classification: HYDROLASE
Source organism: Pyricularia oryzae 70-15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-05-23
Authors: McCombe, C.L., Ericsson, D.J., Williams, S.J.
PDB entry 8sxt: Structure of LINE-1 ORF2p with template:primer hybrid
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-05-24
Authors: van Eeuwen, T., Taylor, M.S., Rout, M.P.
PDB entry 8sxu: Structure of LINE-1 ORF2p with an oligo(A) template
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2023-05-24
Authors: van Eeuwen, T., Taylor, M.S., Rout, M.P.
PDB entry 8sxv: X-ray crystal structure of UDP- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27, apo form, pH 9
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-05-24
Authors: McKnight, J.O., Thoden, J.B., Holden, H.M.
PDB entry 8sxw: X-ray crystal structure of UDP- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27, D98N mutation, apo structure at pH 6
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-05-24
Authors: Kroft, C.W., Thoden, J.B., Holden, H.M.
PDB entry 8sxx: E. coli dodecamer SIR2
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-05-24
Authors: Shen, Z.F., Lin, Q.P., Fu, T.M.
PDB entry 8sxy: X-ray crystal structure of UDP- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27 in complex with its product UDP-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at pH 5
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-05-24
Authors: McKnight, J.O., Thoden, J.B., Holden, H.M.
PDB entry 8sxz: Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-05-24
Authors: Jimah, J.R., Canagarajah, B.J., Hinshaw, J.E.
PDB entry 8sy0: X-ray crystal structure of UDP- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27 in complex with its product UDP-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at pH 9
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-05-24
Authors: McKnight, J.O., Thoden, J.B., Holden, H.M.
PDB entry 8sy1: RNA duplex bound with imidazolium bridged GA dinucleotide
Classification: RNA
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-05-24
Authors: Zhang, W., Dantsu, Y.
PDB entry 8sy2: Peanut USP-type BURP Domain Peptide Cyclase
Classification: OXIDOREDUCTASE
Source organism: Arachis hypogaea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2023-05-24
Authors: Mydy, L.S., Kersten, R.D., Smith, J.L.
PDB entry 8sy3: Copper Complex of Peanut USP-type BURP Domain Peptide Cyclase
Classification: OXIDOREDUCTASE
Source organism: Arachis hypogaea
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-05-24
Authors: Mydy, L.S., Kersten, R.D., Smith, J.L.
PDB entry 8sy4: Porous framework formed by assembly of a bipyridyl-conjugated helical peptide
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2023-05-24
Authors: Hess, S.S., Nguyen, A.I.
PDB entry 8sy5: E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dS-BTP base pair in the active site
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-05-24
Authors: Shan, Z., Lyumkis, D., Oh, J., Wang, D.
PDB entry 8sy6: E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-UTP base pair in the active site
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-05-24
Authors: Shan, Z., Lyumkis, D., Oh, J., Wang, D.
PDB entry 8sy7: E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-STP base pair in the active site
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-05-24
Authors: Shan, Z., Lyumkis, D., Oh, J., Wang, D.
PDB entry 8sy8: Crystal structure of TsaC
Classification: OXIDOREDUCTASE
Source organism: Comamonas testosteroni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-05-24
Authors: Boggs, D.G., Tian, J., Bridwell-Rabb, J.
PDB entry 8sy9: X-ray crystal structure of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27, D98N variant in the presence of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid, UDP-N-acetylglucosamine and UDP at pH 7
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-05-25
Authors: Thoden, J.B., Holden, H.M.
PDB entry 8sya: X-ray crystal structure of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27, D98N variant in the presence of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid and UDP at pH 9
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-05-25
Authors: Thoden, J.B., Holden, H.M.
PDB entry 8syb: X-ray crystal structure of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27, D98N variant in the presence of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid and UDP-N-acetylglucosamine at pH 9
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-05-25
Authors: Kroft, C.W., Thoden, J.B., Holden, H.M.
PDB entry 8syc: Crystal structure of PDE3B in complex with GSK4394835A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-05-25
Authors: Concha, N.O., Nolte, R.
PDB entry 8syd: X-ray crystal structure of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27, D98N variant in the presence of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid and UDP-N-acetylglucosamine at pH 6
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-05-25
Authors: Kroft, C.W., Thoden, J.B., Holden, H.M.
PDB entry 8sye: X-ray crystal structure of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27, D98N variant in the presence of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid and UDP at pH 6
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-05-25
Authors: Jast, J.D.T., Thoden, J.B., Holden, H.M.
PDB entry 8syf: Homology model of Acto-HMM complex in ADP-state. Chicken smooth muscle HMM and chicken pectoralis actin
Classification: MOTOR PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 19 Å
Deposited: 2023-05-25
Authors: Hojjatian, A., Taylor, D.W., Daneshparvar, N., Trybus, K.M., Taylor, K.A.
PDB entry 8syg: Cryo-EM structure of tetradecameric hub domain of CaMKII alpha
Classification: SIGNALING PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-05-25
Authors: Chien, C.-T., Chiu, W., Khan, S.
PDB entry 8syh: X-ray crystal structure of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27, D98N variant in the presence of UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid and UDP at pH 8
Classification: ISOMERASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-05-25
Authors: Jast, J.D.T., Thoden, J.B., Holden, H.M.
PDB entry 8syi: Cyanobacterial RNAP-EC
Classification: TRANSCRIPTION
Source organism: Synechococcus elongatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-05-25
Authors: Qayyum, M.Z., Imashimizu, M., Leanca, M., Vishwakarma, R.K., Bradley Riaz, A., Yuzenkova, Y., Murakami, K.S.
PDB entry 8syj: Structure of apurinic/apyrimidinic DNA lyase TK0353 from Thermococcus kodakarensis (Iodide crystal form)
Classification: LYASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-05-25
Authors: Eckenroth, B.E., Gardner, A.F., Doublie, S.
PDB entry 8syk: Crystal structure of RNA device 43 truncation mutant 3 (U100C), holo state
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2023-05-25
Authors: Stagno, J.R., Deme, J.C., Lee, Y.-T., Wang, Y.-X., Lee, H.K., Lea, S.M.
PDB entry 8syl: Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-05-25
Authors: Seely, S.M., Gagnon, M.G.
PDB entry 8sym: Human VPS29/VPS35L Complex (Locally refined map)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-05-25
Authors: Chen, Z., Chen, B., Burstein, E., Han, Y.
PDB entry 8syn: Human VPS35L/VPS29/VPS26C Complex
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-05-25
Authors: Chen, Z., Chen, B., Burstein, E., Han, Y.
PDB entry 8syo: Human Retriever VPS35L/VPS29/VPS26C Complex (Composite Map)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-05-25
Authors: Chen, Z., Chen, B., Burstein, E., Han, Y.
PDB entry 8syp: Genomic CX3CR1 nucleosome
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-05-25
Authors: Lian, T., Guan, R., Bai, Y.
PDB entry 8sz2: Stx2A1 bound to P8 stalk peptide
Classification: TOXIN, Hydrolase
Source organism: Escherichia coli O104:H4; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-05-26
Authors: rudolph, M.J., Li, X.P.
PDB entry 8sz3: Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 7j
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-05-26
Authors: Sudom, A., Min, X.
PDB entry 8sz4: Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state showing the PH domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-05-26
Authors: Jimah, J.R., Canagarajah, B.J., Hinshaw, J.E.
PDB entry 8sz5: [2T5] Self-assembling DNA motif with 5 base pairs between junctions and P32 symmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-05-26
Authors: Vecchioni, S., Janowski, J., Sha, R., Ohayon, Y.P.
PDB entry 8sz6: PmHMGR bound to mevaldehyde and CoA
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp. 'mevalonii'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-05-27
Authors: Purohit, V., Stauffacher, C.V., Steussy, C.N.
PDB entry 8sz7: Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state showing the second PH domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-05-27
Authors: Jimah, J.R., Canagarajah, B.J., Hinshaw, J.E.
PDB entry 8sz8: Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state (full helix)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2023-05-27
Authors: Jimah, J.R., Canagarajah, B.J., Hinshaw, J.E.
PDB entry 8sza: Cryo-EM Structure of NINJ1 Filament at 2.75 Angstrom Resolution
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-05-29
Authors: Sahoo, B., Dai, X.
PDB entry 8szb: Cryo-EM Structure of NINJ2 Filament at 3.07 Angstrom Resolution
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-05-29
Authors: Sahoo, B., Dai, X.
PDB entry 8szc: Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to substrate and ATP: BmrCD_IF-1HT/ATP
Classification: TRANSLOCASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-05-29
Authors: Tang, Q., Mchaourab, H.
PDB entry 8szd: Crystal structure of Yersinia pestis dihydrofolate reductase at 1.25-A resolution
Classification: OXIDOREDUCTASE
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-05-29
Authors: Shaw, G.X., Cherry, S., Tropea, J.E., Waugh, D.S., Ji, X.
PDB entry 8sze: Crystal structure of Yersinia pestis dihydrofolate reductase in complex with Trimethoprim
Classification: OXIDOREDUCTASE
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-05-29
Authors: Shaw, G.X., Cherry, S., Tropea, J.E., Waugh, D.S., Ji, X.
PDB entry 8szf: Cryo-EM structure of cinacalcet-bound active-state human calcium-sensing receptor CaSR in lipid nanodiscs
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-05-29
Authors: He, F., Wu, C., Gao, Y., Skiniotis, G.
PDB entry 8szg: Cryo-EM structure of cinacalcet-bound human calcium-sensing receptor CaSR-Gq complex in lipid nanodiscs
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-05-29
Authors: He, F., Wu, C., Gao, Y., Skiniotis, G.
PDB entry 8szh: Cryo-EM structure of cinacalcet-bound human calcium-sensing receptor CaSR-Gi complex in lipid nanodiscs
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-05-29
Authors: He, F., Wu, C., Gao, Y., Skiniotis, G.
PDB entry 8szi: Cryo-EM structure of PAM-free human calcium-sensing receptor CaSR-Gi complex in lipid nanodiscs
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-05-29
Authors: He, F., Wu, C., Gao, Y., Skiniotis, G.
PDB entry 8szj: Human glutaminase C (Y466W) with L-Gln and Pi, filamentous form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-05-29
Authors: Feng, S., Aplin, C., Nguyen, T.-T.T., Milano, S.K., Cerione, R.A.
PDB entry 8szk: The cryo-EM structure of PPP2R5A/HIV-1 Vif/CBFb/EloB/EloC complex
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-05-30
Authors: Hu, Y., Xiong, Y.
PDB entry 8szl: Human liver-type glutaminase (Apo form)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-05-30
Authors: Feng, S., Aplin, C., Nguyen, T.-T.T., Milano, S.K., Cerione, R.A.
PDB entry 8szm: Crystal structure of E. coli ClpP protease in complex with phosphine oxide compound ACP6-12
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-05-30
Authors: Mabanglo, M.F., Houry, W.A.
PDB entry 8szn: Crystal structure of Neisseria meningitidis ClpP protease in complex with phosphine oxide compound ACP6-12
Classification: HYDROLASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-05-30
Authors: Mabanglo, M.F., Houry, W.A.
PDB entry 8szo: Canavalia villosa lectin in complex with alpha-methyl-mannoside
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia villosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-05-30
Authors: Cavada, B.S., Lossio, C.F., Pinto-Junior, V.R., Osterne, V.J.S., Oliveira, M.V., Neco, A.H.B., Nascimento, K.S.
PDB entry 8szp: Human DHX9 bound to ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-05-30
Authors: Lee, Y.-T., Sickmier, E.A., Grigoriu, S., Boriack-Sjodin, P.A.
PDB entry 8szq: Cat DHX9 bound to ADP
Classification: HYDROLASE
Source organism: Felis catus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.711 Å
Deposited: 2023-05-30
Authors: Lee, Y.-T., Sickmier, E.A., Grigoriu, S., Boriack-Sjodin, P.A.
PDB entry 8szr: Dog DHX9 bound to ADP
Classification: HYDROLASE
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2023-05-30
Authors: Lee, Y.-T., Sickmier, E.A., Grigoriu, S., Boriack-Sjodin, P.A.
PDB entry 8szs: Cat DHX9 bound to GDP
Classification: HYDROLASE
Source organism: Felis catus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-05-30
Authors: Lee, Y.-T., Sickmier, E.A., Boriack-Sjodin, P.A.
PDB entry 8szt: Structure of Kdac1 from Acinetobacter baumannii
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-05-30
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8szu: Structure of Kdac1-Citarinostat complex from Acinetobacter baumannii
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-05-30
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8szv: Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog SJPYT-318
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-05-30
Authors: Huber, A.D., Poudel, S., Miller, D.J., Li, Y., Chen, T.
PDB entry 8szw: Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: open duplex DNA (rPTCo)
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2023-05-30
Authors: Brewer, J.J., Darst, S.A., Campbell, E.A.
PDB entry 8szx: Crystal structure of b'-WD40 Lys17Ala mutant
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-05-30
Authors: Dey, D., Hasan, S.S.
PDB entry 8szy: Crystal Structure of Heterotrimeric Anti-TIGIT Fabs in complex with human TIGIT
Classification: IMMUNE SYSTEM,PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-05-30
Authors: Diong, S.J., Lee, P.S.
PDB entry 8szz: CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Classification: DE NOVO PROTEIN
Source organism: Thermotoga maritima; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-05-30
Authors: Weidle, C., Borst, A.
PDB entry 8t00: Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: closed duplex DNA (rPTCc)
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.69 Å
Deposited: 2023-05-31
Authors: Brewer, J.J., Darst, S.A., Campbell, E.A.
PDB entry 8t01: Solution NMR structure of a multifunctional synthetic peptide Hp-MAP3 derived from Temporin-PTa
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-05-31
Authors: Freitas, C.D.P., Migliolo, L., Silva, P.S., Liao, L.M.
PDB entry 8t02: Reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA: unwinding duplex DNA (rPTCi)
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2023-05-31
Authors: Brewer, J.J., Darst, S.A., Campbell, E.A.
PDB entry 8t03: Structure of mouse Myomaker bound to Fab18G7 in detergent
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2023-05-31
Authors: Long, T., Li, X.
PDB entry 8t04: Structure of mouse Myomaker bound to Fab18G7 in nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-05-31
Authors: Long, T., Li, X.
PDB entry 8t05: Structure of Ciona Myomaker bound to Fab1A1
Classification: MEMBRANE PROTEIN
Source organism: Ciona robusta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-05-31
Authors: Long, T., Li, X.
PDB entry 8t06: Structure of mouse Myomaker mutant-R107A bound to Fab18G7
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-05-31
Authors: Long, T., Li, X.
PDB entry 8t07: Structure of mouse Myomaker mutant-Y118A bound to Fab18G7
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2023-05-31
Authors: Long, T., Li, X.
PDB entry 8t08: Preholo-Proteasome from Pre1-1 Pre4-1 Double Mutant
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-05-31
Authors: Walsh Jr., R.M., Rawson, S., Schnell, H., Velez, B., Hanna, J.
PDB entry 8t09: Co-crystal structure of KRIT1 with a 1-hydroxy 2-naphthaldehyde derivative (6-ethynyl-2-hydroxy-1-naphthaldehyde)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-05-31
Authors: Bruystens, J.G.H.
PDB entry 8t0a: Crystal structure of integrin beta-2 tail bound to the FERM-folded talin head domain with a Y270E mutation
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-05-31
Authors: Wu, J., Gao, T.
PDB entry 8t0b: Novel Domain of Unknown Function Solved with AlphaFold
Classification: UNKNOWN FUNCTION
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-05-31
Authors: Miller, J.E., Cascio, D., Sawaya, M.R., Yeates, T.O.
PDB entry 8t0c: TRPV1 in Nanodisc bound with lysophosphatidic acid in all four monomers
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-05-31
Authors: Arnold, W.R., Cheng, Y.
PDB entry 8t0d: Crystal structure of integrin beta-2 tail bound to the FERM-folded talin head domain with E269A/Y270A/K306Q triple mutation
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2023-05-31
Authors: Wu, J., Gao, T.
PDB entry 8t0e: TRPV1 in Nanodisc not bound with lysophosphatidic acid (apo)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-05-31
Authors: Arnold, W.R., Cheng, Y.