LiteFold/PDB huggingface dataset:
PDB entry 4qag: Structure of a dihydroxycoumarin active-site inhibitor in complex with the RNASE H domain of HIV-1 reverse transcriptase
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.712 Å
Deposited: 2014-05-04
Authors: Himmel, D.M., Ho, W.C., Arnold, E.
PDB entry 4qah: The second sphere residue T263 is important for function and activity of PTP1B through modulating WPD loop
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.403 Å
Deposited: 2014-05-05
Authors: Xiao, P., Wang, X., Wang, H.M., Fu, X.L., Cui, F.A., Bi, W.X.
PDB entry 4qai: P. stipitis OYE2.6-Y78W
Classification: OXIDOREDUCTASE
Source organism: Scheffersomyces stipitis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2014-05-05
Authors: Sullivan, B., Walton, A.Z., Stewart, J.D.
PDB entry 4qaj: Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa at 1.5 Angstrom resolution
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-05-05
Authors: Singh, A., Kumar, A., Gautam, L., Sinha, M., Bhushan, A., Kaur, P., Sharma, S., Arora, A., Singh, T.P.
PDB entry 4qak: Crystal structure of phosphoesterase
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.025 Å
Deposited: 2014-05-05
Authors: Remus, B.S., Shuman, S.
PDB entry 4qal: Crystal structure of C117A mutant of human acidic fibroblast growth factor
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-05-05
Authors: Blaber, M., Xia, X.
PDB entry 4qam: Crystal Structure of the RPGR RCC1-like domain in complex with the RPGR-interacting domain of RPGRIP1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2014-05-05
Authors: Remans, K., Buerger, M., Vetter, I.R., Wittinghofer, A.
PDB entry 4qan: Crystal structure of a cystatin-like protein (RUMGNA_02398) from Ruminococcus gnavus ATCC 29149 at 2.10 A resolution
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Ruminococcus gnavus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-05-05
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4qao: Lysine-ligated cytochrome c with F82H
Classification: ELECTRON TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.103 Å
Deposited: 2014-05-05
Authors: Amacher, J.F., Zhu, M.Q., Zhong, F., Pletneva, E.K., Madden, D.R.
PDB entry 4qap: The second sphere residue T263 is important for function and activity of PTP1B through modulating WPD loop
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.903 Å
Deposited: 2014-05-05
Authors: Xiao, P., Wang, X., Wang, H.M., Fu, X.L., Cui, F.A., Yu, X., Bi, W.X., Sun, J.P.
PDB entry 4qaq: 1.58 A resolution structure of CT263 (MTAN) from Chlamydia trachomatis
Classification: HYDROLASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2014-05-05
Authors: Barta, M.L., Thomas, K., Lovell, S., Battaile, K.P., Schramm, V.L., Hefty, P.S.
PDB entry 4qar: 1.45 A resolution structure of CT263 (MTAN) from Chlamydia trachomatis bound to Adenine
Classification: HYDROLASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2014-05-05
Authors: Barta, M.L., Thomas, K., Lovell, S., Battaile, K.P., Schramm, V.L., Hefty, P.S.
PDB entry 4qas: 1.27 A resolution structure of CT263-D161N (MTAN) from Chlamydia trachomatis
Classification: HYDROLASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2014-05-05
Authors: Barta, M.L., Thomas, K., Lovell, S., Battaile, K.P., Schramm, V.L., Hefty, P.S.
PDB entry 4qat: 1.75 A resolution structure of CT263-D161N (MTAN) from Chlamydia trachomatis bound to MTA
Classification: HYDROLASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2014-05-05
Authors: Barta, M.L., Thomas, K., Lovell, S., Battaile, K.P., Schramm, V.L., Hefty, P.S.
PDB entry 4qau: Crystal structure of F43Y mutant of sperm whale myoglobin
Classification: OXYGEN TRANSPORT
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.597 Å
Deposited: 2014-05-06
Authors: Lin, Y., Tan, X., Li, W.
PDB entry 4qav: The structure of Beta-ketoacyl -(acyl carrier protein) synthase II (FabF) from Neisseria meningitidis
Classification: TRANSFERASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-05-06
Authors: Nanson, J.D., Forwood, J.K.
PDB entry 4qaw: Structure of modular Xyn30D from Paenibacillus barcinonensis
Classification: HYDROLASE
Source organism: Paenibacillus barcinonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-05-06
Authors: Sainz-Polo, M.A., Sanz-Aparicio, J.
PDB entry 4qax: Crystal structure of post-catalytic binary complex of Phosphoglycerate mutase from Staphylococcus aureus
Classification: ISOMERASE
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-06
Authors: Roychowdhury, A., Kundu, A., Bose, M., Gujar, A., Das, A.K.
PDB entry 4qay: Crystal structure of TamA POTRA domains
Classification: TRANSPORT PROTEIN
Source organism: human gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2014-05-06
Authors: Wojdyla, J.A., Mosbahi, K., Walker, D., Kleanthous, C.
PDB entry 4qaz: The crystal structure of the C-terminal domain of Ebola (Zaire) nucleoprotein
Classification: VIRAL PROTEIN
Source organism: Ebola virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2014-05-06
Authors: Derewenda, U., Dziubanska, P.J., Derewenda, Z.S.
PDB entry 4qb0: The crystal structure of the C-terminal domain of Ebola (Zaire) nucleoprotein
Classification: VIRAL PROTEIN
Source organism: Ebola virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2014-05-06
Authors: Derewenda, U., Dziubanska, P.J., Derewenda, Z.S.
PDB entry 4qb1: Structure of CBM35 from Paenibacillus barcinonensis
Classification: SUGAR BINDING PROTEIN
Source organism: Paenibacillus barcinonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2014-05-06
Authors: Sainz-Polo, M.A., Sanz-Aparicio, J.
PDB entry 4qb2: Structure of CBM35 in complex with glucuronic acid
Classification: SUGAR BINDING PROTEIN
Source organism: Paenibacillus barcinonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-05-06
Authors: Sainz-Polo, M.A., Sanz-Aparicio, J.
PDB entry 4qb3: Crystal structure of the first bromodomain of human BRD4 in complex with Olinone
Classification: TRANSCRIPTION/TRANSCRIPTION INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.94 Å
Deposited: 2014-05-06
Authors: Plotnikov, A.N., Joshua, J., Zhou, M.-M.
PDB entry 4qb4: Crystal Structure of Staphylococcal Nuclease mutant V23L/L25V/V66L
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-06
Authors: Lor, P., Janowska, K., Sakon, J., Stites, W.E.
PDB entry 4qb5: Crystal structure of a glyoxalase/bleomycin resistance protein from Albidiferax ferrireducens T118
Classification: OXIDOREDUCTASE
Source organism: Albidiferax ferrireducens T118
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2014-05-06
Authors: Kumaran, D., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Seidel, R., Villigas, G., Zencheck, W., Al Obaidi, N., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
PDB entry 4qb6: Structure of CBM35 in complex with aldouronic acid
Classification: SUGAR BINDING PROTEIN
Source organism: Paenibacillus barcinonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2014-05-06
Authors: Sainz-Polo, M.A., Sanz-Aparicio, J.
PDB entry 4qb7: Crystal structure of a fimbrial protein (BVU_2522) from Bacteroides vulgatus ATCC 8482 at 2.55 A resolution
Classification: CELL ADHESION
Source organism: Bacteroides vulgatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2014-05-06
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4qb8: Crystal Structure of beta-lactamase from M.tuberculosis forming Michaelis Menten with Tebipenem
Classification: hydrolase/antibiotic
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.758 Å
Deposited: 2014-05-06
Authors: Hazra, S., Blanchard, J.
PDB entry 4qb9: Crystal structure of Mycobacterium smegmatis Eis in complex with paromomycin
Classification: TRANSFERASE
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.293 Å
Deposited: 2014-05-06
Authors: Kim, K.H., Ahn, D.R., Yoon, H.J., Yang, J.K., Suh, S.W.
PDB entry 4qba: Crystal structure of the effector-binding domain of S. aureus CcpE
Classification: TRANSCRIPTION REGULATOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2014-05-06
Authors: Liu, X., Lan, L., Yang, C.G.
PDB entry 4qbb: Structure of the foot-and-mouth disease virus leader proteinase in complex with inhibitor (N~2~-[(3S)-4-({(2R)-1-[(4-CARBAMIMIDAMIDOBUTYL)AMINO]-4-METHYL-1-OXOPENTAN-2-YL}AMINO)-3-HYDROXY-4-OXOBUTANOYL]-L-ARGINYL-L-PROLINAMIDE)
Classification: hydrolase/hydrolase inhibitor
Source organism: Foot-and-mouth disease virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-07
Authors: Grishkovskaya, I., Steinberger, J., Cencic, R., Juliano, M.A., Juliano, L., Skern, T.
PDB entry 4qbc: Crystal structure of C117T mutant of human acidic fibroblast growth factor in sodium formate buffer
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.519 Å
Deposited: 2014-05-07
Authors: Blaber, M., Xia, X.
PDB entry 4qbe: The second sphere residue T263 is important for function and activity of PTP1B through modulating WPD loop
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.292 Å
Deposited: 2014-05-08
Authors: Xiao, P., Wang, X., Wang, H.M., Fu, X.L., Cui, F.A., Yu, X., Bi, W.X.
PDB entry 4qbf: Crystal structure of a stable adenylate kinase variant AKlse2
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-08
Authors: Moon, S., Bae, E.
PDB entry 4qbg: Crystal structure of a stable adenylate kinase variant AKlse4
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2014-05-08
Authors: Moon, S., Bae, E.
PDB entry 4qbh: Crystal structure of a stable adenylate kinase variant AKlse5
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2014-05-08
Authors: Moon, S., Bae, E.
PDB entry 4qbi: Crystal structure of a stable adenylate kinase variant AKlse6
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2014-05-08
Authors: Moon, S., Bae, E.
PDB entry 4qbj: Crystal structure of N-myristoyl transferase from Aspergillus fumigatus complexed with a synthetic inhibitor
Classification: Transferase/Transferase inhibitor
Source organism: Aspergillus fumigatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-05-08
Authors: Suzuki, M., Shimada, T.
PDB entry 4qbk: Crystal structure of the complex of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with amino acyl-tRNA analogue at 1.77 Angstrom resolution
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2014-05-08
Authors: Singh, A., Sinha, M., Bhushan, A., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 4qbl: VRR_NUC domain protein
Classification: HYDROLASE
Source organism: Psychrobacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-08
Authors: Smerdon, S.J., Pennell, S., Li, J.
PDB entry 4qbm: Crystal structure of human BAZ2A bromodomain in complex with a diacetylated histone 4 peptide (H4K16acK20ac)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2014-05-08
Authors: Tallant, C., Nunez-Alonso, G., Picaud, S., Filippakopoulos, P., Krojer, T., Williams, E., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 4qbn: VRR_NUC domain
Classification: HYDROLASE
Source organism: Salmonella phage SETP3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2014-05-08
Authors: Smerdon, S.J., Pennell, S., Li, J.
PDB entry 4qbo: VRR_NUC domain
Classification: HYDROLASE
Source organism: Streptococcus phage P9
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2014-05-08
Authors: Smerdon, S.J., Pennell, S., Li, J.
PDB entry 4qbq: Crystal structure of DNMT3a ADD domain bound to H3 peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.406 Å
Deposited: 2014-05-08
Authors: Li, H., Patel, D.J.
PDB entry 4qbr: Crystal structure of DNMT3a ADD domain G550D mutant bound to H3 peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.902 Å
Deposited: 2014-05-08
Authors: Wang, H., Li, H.
PDB entry 4qbs: Crystal structure of DNMT3a ADD domain E545R mutant bound to H3T3ph peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-08
Authors: Wang, H., Li, H.
PDB entry 4qbt: Crystal structure of tyrosine bound human tyrosyl tRNA synthetase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-05-08
Authors: Mathew, S., Schimmel, P.
PDB entry 4qbu: Structure of the Acyl Transferase domain of ZmaA
Classification: TRANSFERASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-05-08
Authors: Dyer, D.H., Kevany, B.M., Thomas, M.G., Forest, K.T.
PDB entry 4qbv: Crystal structure of C117T mutant of human acidic fibroblast growth factor in sodium citrate buffer
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.497 Å
Deposited: 2014-05-08
Authors: Blaber, M., Xia, X.
PDB entry 4qbw: The second sphere residue T263 is important for function and activity of PTP1B through modulating WPD loop
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.912 Å
Deposited: 2014-05-08
Authors: Xiao, P., Wang, X., Wang, H.M., Fu, X.L., Cui, F.A., Yu, X., Bi, W.X., Sun, J.P.
PDB entry 4qbx: Human Aldose Reductase complexed with a ligand with an IDD structure ({5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid) at 0.98 A
Classification: oxidoreductase/oxidoreductase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2014-05-09
Authors: Rechlin, C., Heine, A., Klebe, G.
PDB entry 4qby: yCP in complex with BOC-ALA-ALA-ALA-CHO
Classification: hydrolase/hydrolase inhibitor
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2014-05-09
Authors: Arciniega, M., Beck, P., Lange, O., Groll, M., Huber, R.
PDB entry 4qbz: Crystal structure of human TLR8 in complex with DS-802
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-09
Authors: Tanji, H., Ohto, U., Shimizu, T.
PDB entry 4qc0: Crystal structure of human TLR8 in complex with XG-1-236
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2014-05-09
Authors: Tanji, H., Ohto, U., Shimizu, T.
PDB entry 4qc1: Crystal structure of human BAZ2B bromodomain in complex with an acetylated histone 3 peptide (H3K14ac)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2014-05-09
Authors: Tallant, C., Jose, B., Picaud, S., Chaikuad, A., Filippakopoulos, P., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 4qc2: Crystal structure of lipopolysaccharide transport protein LptB in complex with ATP and Magnesium ions
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2014-05-09
Authors: Wang, Z., Xiang, Q., Zhu, X., Dong, H., He, C., Wang, H., Zhang, Y., Wang, W., Dong, C.
PDB entry 4qc3: Crystal structure of human BAZ2B bromodomain in complex with a diacetylated histone 4 peptide (H4K8acK12ac)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-09
Authors: Tallant, C., Jose, B., Picaud, S., Chaikuad, A., Filippakopoulos, P., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 4qc4: Crystal structure of C117S mutant of human acidic fibroblast growth factor
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.491 Å
Deposited: 2014-05-09
Authors: Blaber, M., Xia, X.
PDB entry 4qc6: Crystal structure of aminoglycoside 6'-acetyltransferase-Ie
Classification: transferase/antibiotic
Source organism: Staphylococcus warneri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2014-05-09
Authors: Smith, C.A., Toth, M., Weiss, T.M., Frase, H., Vakulenko, S.B.
PDB entry 4qc7: Dodecamer structure of 5-formylcytosine containing DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-05-09
Authors: Szulik, M.W., Pallan, P., Egli, M., Stone, M.P.
PDB entry 4qc8: Structural annotation of pathogenic bovine Parvovirus-1
Classification: VIRUS
Source organism: Bovine parvovirus-1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2014-05-09
Authors: Kailasan, S., Halder, S., Gurda, B.L., Bladek, H., Chipman, P.R., McKenna, R., Brown, K., Agbandje-McKenna, M.
PDB entry 4qc9: Crystal structure of Vaccinia virus uracil-DNA glycosylase mutant 3GD4
Classification: HYDROLASE
Source organism: Vaccinia virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.259 Å
Deposited: 2014-05-09
Authors: Sartmatova, D., Nash, T., Schormann, N., Nuth, M., Ricciardi, R., Banerjee, S., Chattopadhyay, D.
PDB entry 4qca: Crystal structure of Vaccinia virus uracil-DNA glycosylase mutant R167AD4
Classification: HYDROLASE
Source organism: Vaccinia virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-05-09
Authors: Sartmatova, D., Nash, T., Schormann, N., Nuth, M., Ricciardi, R., Banerjee, S., Chattopadhyay, D.
PDB entry 4qcb: Protein-DNA complex of Vaccinia virus D4 with double-stranded non-specific DNA
Classification: HYDROLASE/DNA
Source organism: Vaccinia virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2014-05-09
Authors: Schormann, N., Banerjee, S., Ricciardi, R., Chattopadhyay, D.
PDB entry 4qcc: Structure of a cube-shaped, highly porous protein cage designed by fusing symmetric oligomeric domains
Classification: STRUCTURAL PROTEIN, LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 7.078 Å
Deposited: 2014-05-10
Authors: Lai, Y.-T., Yeates, T.O.
PDB entry 4qcd: Neutron crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha at room temperature.
Classification: OXIDOREDUCTASE
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2014-05-10
Authors: Unno, M., Ishikawa-Suto, K., Ishihara, M., Hagiwara, Y., Sugishima, M., Wada, K., Fukuyama, K.
PDB entry 4qce: Crystal structure of recombinant alkali thermostable GH10 xylanase from Bacillus sp. NG-27
Classification: HYDROLASE
Source organism: Bacillus sp. NG-27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2014-05-11
Authors: Mahanta, P., Bhardwaj, A., Reddy, V.S., Ramakumar, S.
PDB entry 4qcf: Crystal structure of N-terminal mutant (V1A) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
Classification: HYDROLASE
Source organism: Bacillus sp. NG-27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2014-05-11
Authors: Mahanta, P., Bhardwaj, A., Reddy, V.S., Ramakumar, S.
PDB entry 4qci: PDGF-B blocking antibody bound to PDGF-BB
Classification: CYTOKINE/CYTOKINE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2014-05-12
Authors: Kuai, J., Mosyak, L., Tam, M., LaVallie, E., Pullen, N., Carven, G.
PDB entry 4qcj: Crystal Structure of OdhI from Corynebacterium glutamicum
Classification: PROTEIN BINDING
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-12
Authors: Labahn, J., Raasch, K., Eggeling, L., Bocola, M., Leitner, A., Bott, M.
PDB entry 4qck: Crystal structure of 3-ketosteroid-9-alpha-hydroxylase (KshA) from M. tuberculosis in complex with 4-androstene-3,17-dione
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2014-05-12
Authors: Penfield, J., Worrall, L.J., Strynadka, N.C., Eltis, L.D.
PDB entry 4qcl: Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and dCTP
Classification: TRANSFERASE/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-05-12
Authors: Baranovskiy, A.G., Suwa, Y., Babayeva, N.D., Gu, J., Tahirov, T.H.
PDB entry 4qd2: Molecular basis for disruption of E-cadherin adhesion by botulinum neurotoxin A complex
Classification: CELL ADHESION
Source organism: Clostridium botulinum; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-05-13
Authors: Lee, K., Zhong, X., Gu, S., Kruel, A., Dorner, M.B., Perry, K., Rummel, A., Dong, M., Jin, R.
PDB entry 4qd3: Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with 5-azacytidine at 1.89 Angstrom resolution
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2014-05-13
Authors: Singh, A., Gautam, L., Sinha, M., Bhushan, A., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 4qd4: Structure of ADC-68, a Novel Carbapenem-Hydrolyzing Class C Extended-Spectrum -Lactamase from Acinetobacter baumannii
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-13
Authors: Hong, M.K., Kang, L.W.
PDB entry 4qd6: ITK kinase domain in complex with inhibitor compound
Classification: Transferase/transferase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2014-05-13
Authors: McEwan, P.A., Barker, J.J., Eigenbrot, C.
PDB entry 4qd7: Crystal structure of Thioesterase PA1618 from Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.765 Å
Deposited: 2014-05-13
Authors: Ji, T., Allen, K.N., Dunaway-Mariano, D.
PDB entry 4qd8: Crystal structure of Thioesterase PA1618 from Pseudomonas aeruginosa in complex with phenacyl-CoA
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.616 Å
Deposited: 2014-05-13
Authors: Ji, T., Allen, K.N., Dunaway-Mariano, D.
PDB entry 4qd9: Crystal structure of Thioesterase PA1618 from Pseudomonas aeruginosa in complex with benzoyl-dO-CoA
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.767 Å
Deposited: 2014-05-13
Authors: Ji, T., Allen, K.N., Dunaway-Mariano, D.
PDB entry 4qda: Crystal structure of mutant Thioesterase PA1618 (E64A) from Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.299 Å
Deposited: 2014-05-13
Authors: Ji, T., Allen, K.N., Dunaway-Mariano, D.
PDB entry 4qdb: Crystal structure of mutant Thioesterase PA1618 (Q49A) from Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.023 Å
Deposited: 2014-05-13
Authors: Ji, T., Allen, K.N., Dunaway-Mariano, D.
PDB entry 4qdc: Crystal structure of 3-ketosteroid-9-alpha-hydroxylase 5 (KshA5) from R. rhodochrous in complex with FE2/S2 (INORGANIC) CLUSTER
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus rhodochrous
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-05-13
Authors: Penfield, J., Worrall, L.J., Strynadka, N.C., Eltis, L.D.
PDB entry 4qdd: Crystal structure of 3-ketosteroid-9-alpha-hydroxylase 5 (KshA5) from R. rhodochrous in complex with 1,4-30Q-CoA
Classification: oxidoreductase/oxidoreductase inhibitor
Source organism: Rhodococcus rhodochrous
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-05-13
Authors: Penfield, J., Worrall, L.J., Strynadka, N.C., Eltis, L.D.
PDB entry 4qde: Dcps in complex with covalent inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2014-05-13
Authors: Liu, S.
PDB entry 4qdf: Crystal structure of apo KshA5 and KshA1 in complex with 1,4-30Q-CoA from R. rhodochrous
Classification: oxidoreductase/oxidoreductase inhibitor
Source organism: Rhodococcus rhodochrous
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2014-05-13
Authors: Penfield, J., Worrall, L.J., Strynadka, N.C., Eltis, L.D.
PDB entry 4qdg: Crystal structure of a putative adhesin (BT2657) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution (PSI Community Target, Nakayama)
Classification: CELL ADHESION
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2014-05-13
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4qdh: Crystal Structure of the C-terminal Domain of Mouse TLR9
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.399 Å
Deposited: 2014-05-13
Authors: Collins, B.C., Wilson, I.A.
PDB entry 4qdi: Crystal structure II of MurF from Acinetobacter baumannii
Classification: LIGASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-13
Authors: An, Y.J., Jeong, C.S., Cha, S.S.
PDB entry 4qdj: Crystal structure of magnesium protoporphyrin IX methyltransferase (ChlM) from Synechocystis PCC 6803 with bound SAM
Classification: TRANSFERASE
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-14
Authors: Chen, X., Wang, X., Liu, L.
PDB entry 4qdk: Crystal structure of magnesium protoporphyrin IX methyltransferase (ChlM) from Synechocystis PCC 6803 with bound SAH
Classification: TRANSFERASE
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-05-14
Authors: Chen, X., Wang, X., Liu, L.
PDB entry 4qdl: Crystal structure of E.coli Cas1-Cas2 complex
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-05-14
Authors: Tamulaitiene, G., Sinkunas, T., Silanskas, A., Gasiunas, G., Grazulis, S., Siksnys, V.
PDB entry 4qdm: Crystal structure of N-terminal mutant (V1L) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
Classification: HYDROLASE
Source organism: Bacillus sp. NG-27
Experimental method: X-RAY DIFFRACTION
Resolution: 1.964 Å
Deposited: 2014-05-14
Authors: Mahanta, P., Bhardwaj, A., Reddy, V.S., Ramakumar, S.
PDB entry 4qdn: Crystal Structure of the endo-beta-N-acetylglucosaminidase from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-05-14
Authors: Lipski, A., Nurizzo, D., Bourne, Y., Vincent, F.
PDB entry 4qdo: Crystal structure of Ag85C co-crystallized with p-chloromercuribenzoic acid
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.899 Å
Deposited: 2014-05-14
Authors: Favrot, L., Lajiness, D.H., Ronning, D.R.
PDB entry 4qdp: Joint X-ray and neutron structure of Streptomyces rubiginosus D-xylose isomerase in complex with two Cd2+ ions and cyclic beta-L-arabinose
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: NEUTRON DIFFRACTION, X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-14
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 4qdq: Physical basis for Nrp2 ligand binding
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-05-14
Authors: Parker, M.W., Vander Kooi, C.W.
PDB entry 4qdr: Physical basis for Nrp2 ligand binding
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-05-14
Authors: Parker, M.W., Vander Kooi, C.W.
PDB entry 4qds: Physical basis for Nrp2 ligand binding
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-05-14
Authors: Parker, M.W., Vander Kooi, C.W.
PDB entry 4qdt: Crystal structure of Antigen 85C co-crystallized with iodoacetamide
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.498 Å
Deposited: 2014-05-14
Authors: Favrot, L., Lajiness, D.H., Ronning, D.R.
PDB entry 4qdu: Crystal structure of Antigen 85C co-crystallized with ebselen
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2014-05-14
Authors: Favrot, L., Lajiness, D.H., Ronning, D.R.
PDB entry 4qdv: Dcps in complex with covalent ligand
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-05-14
Authors: Liu, S.
PDB entry 4qdw: Joint X-ray and neutron structure of Streptomyces rubiginosus D-xylose isomerase in complex with two Ni2+ ions and linear L-arabinose
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-14
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 4qdx: Crystal structure of Antigen 85C-C209G mutant
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.503 Å
Deposited: 2014-05-14
Authors: Favrot, L., Lajiness, D.H., Ronning, D.R.
PDB entry 4qdy: Crystal structure of a YbbR-like protein (SP_1560) from Streptococcus pneumoniae TIGR4 at 2.74 A resolution
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2014-05-14
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4qdz: Crystal structure of Antigen 85C-E228Q mutant
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.885 Å
Deposited: 2014-05-14
Authors: Favrot, L., Lajiness, D.H., Ronning, D.R.
PDB entry 4qe0: Crystal structure of a DUF5043 family protein (BACUNI_01052) from Bacteroides uniformis ATCC 8492 at 1.85 A resolution
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Bacteroides uniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2014-05-14
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4qe1: Room temperature X-ray structure of D-xylose isomerase in complex with two Cd2+ ions and L-ribulose
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2014-05-15
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 4qe3: Crystal structure of Antigen 85C-H260Q mutant
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.351 Å
Deposited: 2014-05-15
Authors: Favrot, L., Lajiness, D.H., Ronning, D.R.
PDB entry 4qe4: Room temperature X-ray structure of D-xylose isomerase in complex with two Ni2+ ions and L-ribulose
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-05-15
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 4qe5: Room temperature X-ray structure of D-xylose isomerase in complex with two Mg2+ ions and L-ribulose
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2014-05-15
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 4qe7: Open MthK pore structure soaked in 10 mM Ba2+/100 mM Na+
Classification: TRANSPORT PROTEIN
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-05-15
Authors: Guo, R., Zeng, W., Cui, H., Chen, L., Ye, S.
PDB entry 4qe8: FXR with DM175 and NCoA-2 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2014-05-15
Authors: Kudlinzki, D., Merk, D., Linhard, V.L., Saxena, K., Sreeramulu, S., Nilsson, E., Dekker, N., Wissler, L., Bamberg, K., Schubert-Zsilavecz, M., Schwalbe, H.
PDB entry 4qe9: Open MthK pore structure soaked in 10 mM Ba2+/100 mM K+
Classification: TRANSPORT PROTEIN
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2014-05-15
Authors: Guo, R., Zeng, W., Cui, H., Chen, L., Ye, S.
PDB entry 4qeb: Dcps in complex with covalent inhibitor targeting Tyrosine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2014-05-15
Authors: Liu, S.
PDB entry 4qec: ElxO with NADP Bound
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus epidermidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-05-15
Authors: Garg, N., Nair, S.K.
PDB entry 4qed: ElxO Y152F with NADPH Bound
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus epidermidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2014-05-15
Authors: Garg, N., Nair, S.K.
PDB entry 4qee: Room temperature X-ray structure of D-xylose isomerase in complex with two Ni2+ ions and L-ribose
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-15
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 4qef: Human Carbonic Anhydrase II V207I - cyanate inhibitor complex
Classification: LYASE/LYASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.469 Å
Deposited: 2014-05-15
Authors: West, D.M.
PDB entry 4qeg: Crystal structure of domain I10 from titin (space group P41)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-16
Authors: Bogomolovas, J., Labeit, S., Mayans, O.
PDB entry 4qeh: Room temperature X-ray structure of D-xylose isomerase in complex with two Mg2+ ions and L-ribose
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2014-05-16
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 4qei: Two distinct conformational states of GlyRS captured in crystal lattice
Classification: LIGASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.875 Å
Deposited: 2014-05-16
Authors: Xie, W., Qin, X., Deng, X., Zhang, Q., Li, Q.
PDB entry 4qek: Crystal structure of Antigen 85C-S124A mutant
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.299 Å
Deposited: 2014-05-16
Authors: Favrot, L., Lajiness, D.H., Ronning, D.R.
PDB entry 4qel: Crystal Structure of Benzoylformate Decarboxylase Mutant H70A
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.432 Å
Deposited: 2014-05-16
Authors: Andrews, F.H., Rogers, M.P., Brodkin, H.R., McLeish, M.J.
PDB entry 4qem: Crystal structure of the complex of Phospholipase A2 With P-Coumaric Acid At 1.2 A Resolution
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Daboia russellii pulchella
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2014-05-17
Authors: Shukla, P.K., Tiwari, P., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 4qen: crystal structure of KRYPTONITE in complex with mCHH DNA and SAH
Classification: transcription/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2014-05-17
Authors: Du, J., Li, S., Patel, D.J.
PDB entry 4qeo: crystal structure of KRYPTONITE in complex with mCHH DNA, H3(1-15) peptide and SAH
Classification: transcription/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2014-05-17
Authors: Du, J., Li, S., Patel, D.J.
PDB entry 4qep: crystal structure of KRYPTONITE in complex with mCHG DNA and SAH
Classification: transcription/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2014-05-17
Authors: Du, J., Li, S., Patel, D.J.
PDB entry 4qeq: High resolution structure of egg white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.381 Å
Deposited: 2014-05-18
Authors: Shaik, M.M.
PDB entry 4qer: Crystal Structure of the Complex of Phospholipase A2 with Resveratrol at 1.20 A Resolution
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Daboia russellii pulchella
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2014-05-18
Authors: Shukla, P.K., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 4qes: Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, quadruple mutant, I222 form
Classification: OXIDOREDUCTASE, VIRAL PROTEIN
Source organism: Influenza A virus; Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.193 Å
Deposited: 2014-05-18
Authors: Lai, Y.-T., Yeates, T.O.
PDB entry 4qet: Structure of Aldehyde Dehydrogenase from Bacillus cereus, G224D mutant
Classification: OXIDOREDUCTASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2014-05-19
Authors: Ngo, H.P.T., Hong, S.H., Oh, D.K., Kang, L.W.
PDB entry 4qeu: Crystal structure of BRD2(BD2) mutant in free form
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2014-05-19
Authors: Tallant, C., Baud, M., Lin-Shiao, E., Chirgadze, D.Y., Ciulli, A.
PDB entry 4qev: Crystal structure of BRD2(BD2) mutant with ligand ME bound (METHYL (2R)- 2-[(4S)-6-(4-CHLOROPHENYL)-8-METHOXY-1-METHYL-4H-[1,2,4]TRIAZOLO[4,3-A][1, 4]BENZODIAZEPIN-4-YL]PROPANOATE)
Classification: transcription/transcription inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-19
Authors: Tallant, C., Baud, M., Lin-Shiao, E., Chirgadze, D.Y., Ciulli, A.
PDB entry 4qew: Crystal structure of BRD2(BD2) mutant with ligand ET bound (METHYL (2R)- 2-[(4S)-6-(4-CHLOROPHENYL)-8-METHOXY-1-METHYL-4H-[1,2,4]TRIAZOLO[4,3-A][1, 4]BENZODIAZEPIN-4-YL]BUTANOATE)
Classification: transcription/transcription inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-05-19
Authors: Tallant, C., Baud, M., Lin-Shiao, E., Chirgadze, D.Y., Ciulli, A.
PDB entry 4qex: Crystal structure of PfEBA-175 RII in complex with a Fab fragment from inhibitory antibody R217
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2014-05-19
Authors: Chen, E., Paing, M.M., Salinas, N., Sim, B.K., Tolia, N.H.
PDB entry 4qey: Crystal structure of a DUF4425 family protein (BACOVA_05332) from Bacteroides ovatus ATCC 8483 at 2.52 A resolution
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Bacteroides ovatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2014-05-19
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4qez: Crystal structure of 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Bacillus anthracis
Classification: HYDROLASE
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2014-05-19
Authors: Tarique, K.F., Devi, S., Abdul Rehman, S.A., Gourinath, S.
PDB entry 4qf0: Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, quadruple mutant, P21212 form
Classification: OXIDOREDUCTASE, VIRAL PROTEIN
Source organism: Influenza A virus; Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 6.494 Å
Deposited: 2014-05-19
Authors: Lai, Y.-T., Yeates, T.O.
PDB entry 4qf1: Crystal structure of unliganded CH59UA, the inferred unmutated ancestor of the RV144 anti-HIV antibody lineage producing CH59
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-05-19
Authors: Wiehe, K., Easterhoff, D., Luo, K., Nicely, N.I., Bradley, T., Jaeger, F.H., Dennison, S.M., Zhang, R., Lloyd, K.E., Stolarchuk, C., Parks, R., Sutherland, L.L., Scearce, R.M., Morris, L., Kaewkungwal, J., Nitayaphan, S., Pitisuttithum, P., Rerks-Ngarm, S., Michael, N., Kim, J., Kelsoe, G., Montefiori, D.C., Tomaras, G., Bonsignori, M., Santra, S., Kepler, T.B., Alam, S.M., Moody, M.A., Liao, H.-X., Haynes, B.F.
PDB entry 4qf2: Crystal structure of human BAZ2A PHD zinc finger in the free form
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2014-05-19
Authors: Tallant, C., Overvoorde, L., Van Molle, I., Chirgadze, D.Y., Ciulli, A.
PDB entry 4qf3: Crystal structure of human BAZ2B PHD zinc finger in the free form
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2014-05-19
Authors: Tallant, C., Van Molle, I., Chirgadze, D.Y., Ciulli, A.
PDB entry 4qf4: Crystal structure of Staphylococcal nuclease variant V23M at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-19
Authors: Caro, J.A., Schlessman, J.L., Heroux, A., Garcia-Moreno, E.B.
PDB entry 4qf5: Crystal structure I of MurF from Acinetobacter baumannii
Classification: LIGASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2014-05-19
Authors: An, Y.J., Jeong, C.S., Cha, S.S.
PDB entry 4qf6: Structure of Aldehyde Dehydrogenase from Bacillus cereus, E194S mutant
Classification: OXIDOREDUCTASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2014-05-19
Authors: Ngo, H.P.T., Hong, S.H., Oh, D.K., Kang, L.W.
PDB entry 4qf7: Crystal Structure of the Complex of Phospholipase A2 with Corticosterone at 1.48 A Resolution
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Daboia russellii pulchella
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2014-05-20
Authors: Shukla, P.K., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 4qf8: Crystal Structure of the Complex of Phospholipase A2 with Spermidine at 1.65 A Resolution
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Daboia russellii pulchella
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2014-05-20
Authors: Shukla, P.K., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 4qf9: Structure of GluK1 ligand-binding domain (S1S2) in complex with (S)-2-amino-4-(2,3-dioxo-1,2,3,4-tetrahydroquinoxalin-6-yl)butanoic acid at 2.28 A resolution
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2014-05-20
Authors: Kristensen, C.M., Frydenvang, K., Kastrup, J.S.
PDB entry 4qfb: 1.99 A resolution structure of SeMet-CT263 (MTAN) from Chlamydia trachomatis
Classification: HYDROLASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.986 Å
Deposited: 2014-05-20
Authors: Barta, M.L., Thomas, K., Lovell, S., Battaile, K.P., Schramm, V.L., Hefty, P.S.
PDB entry 4qfc: Co-crystal structure of compound 3 (4-hydroxy-6-[2-(7-hydroxy-2-oxo-4-phenyl-2h-chromen-6-yl)ethyl]pyridazin-3(2h)-one) and FAD bound to human DAAO at 2.4A
Classification: oxidoreductase/oxidoreductase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2014-05-20
Authors: Lukacs, C.M., Chun, L.
PDB entry 4qfd: Co-crystal structure of compound 2 (3-(7-hydroxy-2-oxo-4-phenyl-2H-chromen-6-yl)propanoic acid) and FAD bound to human DAAO at 2.85A
Classification: oxidoreductase/oxidoreductase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2014-05-20
Authors: Edwards, T.E., Chun, L., Arakaki, T.L.
PDB entry 4qfe: Crystal Structure of an Enoyl-CoA hydratase from Mycobacterium smegmatis
Classification: LYASE
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2014-05-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 4qff: Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, quadruple mutant, P212121 form
Classification: OXIDOREDUCTASE, VIRAL PROTEIN
Source organism: Influenza A virus; Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 7.811 Å
Deposited: 2014-05-20
Authors: Lai, Y.-T., Yeates, T.O.
PDB entry 4qfg: Structure of AMPK in complex with STAUROSPORINE inhibitor and in the absence of a synthetic activator
Classification: signaling protein/inhibitor
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2014-05-20
Authors: Calabrese, M.F., Kurumbail, R.G.
PDB entry 4qfh: Structure of a glucose-6-phosphate isomerase from Trypanosoma cruzi
Classification: ISOMERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2014-05-21
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 4qfi: The crystal structure of rat angiogenin-heparin complex
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.784 Å
Deposited: 2014-05-21
Authors: Yeo, K.J., Hwang, E., Min, K.M., Hwang, K.Y., Jeon, Y.H., Chang, S.I., Cheong, H.K.