LiteFold/PDB huggingface dataset:
PDB entry 8qvd: Deinococcus aerius TR0125 C-glucosyl deglycosidase (CGD), wild type crystal cryoprotected with glycerol
Classification: LYASE
Source organism: Deinococcus aerius
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-10-17
Authors: Furlanetto, V., Kalyani, D.C., Kostelac, A., Haltrich, D., Hallberg, B.M., Divne, C.
PDB entry 8qve: C-glucosyl oxidoreductase (DaCGO1) from Deinococcus aerius
Classification: LYASE
Source organism: Deinococcus aerius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-17
Authors: Furlanetto, V., Kalyani, D.C., Kostelac, A., Haltrich, D., Hallberg, B.M., Divne, C.
PDB entry 8qvf: Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-10-18
Authors: Dunge, A., Uwangue, O., Phan, C., Bjelcic, M., Gunnarsson, J., Wehlander, G., Kack, H., Branden, G.
PDB entry 8qvg: Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-10-18
Authors: Dunge, A., Uwangue, O., Phan, C., Bjelcic, M., Gunnarsson, J., Wehlander, G., Kack, H., Branden, G.
PDB entry 8qvh: Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2023-10-18
Authors: Dunge, A., Uwangue, O., Phan, C., Bjelcic, M., Gunnarsson, J., Wehlander, G., Kack, H., Branden, G.
PDB entry 8qvk: Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-10-18
Authors: Dunge, A., Uwangue, O., Phan, C., Bjelcic, M., Gunnarsson, J., Wehlander, G., Kack, H., Branden, G.
PDB entry 8qvl: Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-10-18
Authors: Dunge, A., Uwangue, O., Phan, C., Bjelcic, M., Gunnarsson, J., Wehlander, G., Kack, H., Branden, G.
PDB entry 8qvm: Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-18
Authors: Dunge, A., Uwangue, O., Phan, C., Bjelcic, M., Gunnarsson, J., Wehlander, G., Kack, H., Branden, G.
PDB entry 8qvn: Cryo-EM structure of Cx26 from Gallus Gallus in bicarbonate buffer
Classification: MEMBRANE PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.07 Å
Deposited: 2023-10-18
Authors: Brotherton, D.H., Cameron, A.D.
PDB entry 8qvo: L211Q, L254N, T262G mutant of carboxypeptidase T from Thermoactinomyces vulgaris
Classification: HYDROLASE
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-10-18
Authors: Timofeev, V.I., Dorovatovskii, P.V., Lazarenko, V.A., Akparov, V.K., Kuranova, I.P.
PDB entry 8qvp: Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S29P, polymorph 1
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-11-02
Authors: Ooi, S.A., Valli, D., Maj, M.
PDB entry 8qvq: Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S29P, polymorph 2
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2023-10-18
Authors: Ooi, S.A., Valli, D., Maj, M.
PDB entry 8qvr: Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S29P, polymorph 3
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-18
Authors: Ooi, S.A., Valli, D., Maj, M.
PDB entry 8qvs: Crystal structure of Ompk36 GD at 3500 eV based on a combination of spherical harmonics and analytical absorption corrections
Classification: MEMBRANE PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-10-18
Authors: Duman, R., Wagner, A., Beis, K., Wong, J.
PDB entry 8qvt: Crystal structure of Zea mays cytokinin oxidase/dehydrogenase 5 (ZmCKX5)
Classification: FLAVOPROTEIN
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-10-18
Authors: Kopecny, D., Briozzo, P.
PDB entry 8qvu: Crystal Structure of ligand ACBI3 in complex with KRAS G12D C118S GDP and pVHL:ElonginC:ElonginB complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2023-10-18
Authors: Wijaya, A.J., Zollman, D., Farnaby, W., Ciulli, A.
PDB entry 8qvv: Crystal structure of Ompk36 GD at 3500 eV based on analytical absorption corrections
Classification: MEMBRANE PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-10-18
Authors: Duman, R., Wagner, A., Beis, K., Wong, J.
PDB entry 8qvw: Cryo-EM structure of the peptide binding domain of human SRP68/72
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-18
Authors: Zhong, Y., Feng, J., Koh, A.F., Kotecha, A., Greber, B.J., Ataide, S.F.
PDB entry 8qvx: Structure of the PBD of human SRP68/72 (cryoSPARC 3DFlex)
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-18
Authors: Zhong, Y., Feng, J., Koh, A.F., Kotecha, A., Greber, B.J., Ataide, S.F.
PDB entry 8qvy: Human NDPK-C unliganded
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2023-10-18
Authors: Werten, S., Amjadi, R., Scheffzek, K.
PDB entry 8qvz: Human NDPK-C in complex with cAMP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.774 Å
Deposited: 2023-10-18
Authors: Werten, S., Amjadi, R., Scheffzek, K.
PDB entry 8qw0: Human NDPK-C in complex with GDP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.175 Å
Deposited: 2023-10-18
Authors: Werten, S., Amjadi, R., Scheffzek, K.
PDB entry 8qw1: Human NDPK-C in complex with ADP and Mg2+
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-10-18
Authors: Werten, S., Amjadi, R., Scheffzek, K.
PDB entry 8qw2: Human NDPK-C in complex with UDP and Mg2+
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-10-18
Authors: Werten, S., Amjadi, R., Scheffzek, K.
PDB entry 8qw3: Human NDPK-C in complex with ADP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.255 Å
Deposited: 2023-10-18
Authors: Werten, S., Amjadi, R., Scheffzek, K.
PDB entry 8qw4: FZD3 in complex with nanobody 9
Classification: CELL ADHESION
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-10-18
Authors: Zhao, Y., Jones, E.Y.
PDB entry 8qw6: Crystal Structure of compound 3 in complex with KRAS G12V C118S GDP and pVHL:ElonginC:ElonginB
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-10-18
Authors: Zollman, D., Farnaby, W., Ciulli, A.
PDB entry 8qw7: Crystal Structure of compound 4 in complex with KRAS G12V C118S GDP and pVHL:ElonginC:ElonginB
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2023-10-18
Authors: Zollman, D., Farnaby, W., Ciulli, A.
PDB entry 8qw8: In condensate RNAPII elongation complex bound to RECQ5
Classification: TRANSCRIPTION
Source organism: Bos taurus; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.7 Å
Deposited: 2023-10-19
Authors: Skubnik, K., Sebesta, M., Stefl, R.
PDB entry 8qw9: RNAPII elongation complex bound to RECQ5_R502E
Classification: TRANSCRIPTION
Source organism: Bos taurus; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-10-19
Authors: Skubnik, K., Sebesta, M., Stefl, R.
PDB entry 8qwa: Adenylosuccinate Synthetase from H. pylori in complex with PLP and IMP
Classification: LIGASE
Source organism: Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-10-19
Authors: Bzowska, A., Narczyk, M., Maksymiuk, W.
PDB entry 8qwb: Crystal structure of citrate synthase from Methylophaga sulfidovorans
Classification: TRANSFERASE
Source organism: Methylophaga sulfidovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.201 Å
Deposited: 2023-10-19
Authors: Mais, C.-N., Bange, G., Sendker, F.L., Hochberg, G.
PDB entry 8qwc: Cryo-EM structure of Apo coproheme decarboxylase from Corynebacterium diphtheria.
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium diphtheriae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2023-10-19
Authors: Patil, G., Guo, Y., Borek, D., Hofbauer, S.
PDB entry 8qwd: Apo ReChb
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-10-19
Authors: Lopez-Alonso, J.P., Ubarretxena-Belandia, I., Tascon, I.
PDB entry 8qwe: Ternary complex of ReChb - crRNA - target dsDNA
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-10-19
Authors: Lopez-Alonso, J.P., Ubarretxena-Belandia, I., Tascon, I.
PDB entry 8qwf: ReChb - crRNA - target dsDNA complex in the presence of collateral dsDNA
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-10-19
Authors: Lopez-Alonso, J.P., Ubarretxena-Belandia, I., Tascon, I.
PDB entry 8qwg: Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-10-19
Authors: Dunge, A., Uwangue, O., Phan, C., Bjelcic, M., Gunnarsson, J., Wehlander, G., Kack, H., Branden, G.
PDB entry 8qwi: Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-10-19
Authors: Dunge, A., Uwangue, O., Phan, C., Bjelcic, M., Gunnarsson, J., Wehlander, G., Kack, H., Branden, G.
PDB entry 8qwj: Structure of GFP variant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-10-19
Authors: Lenz, M., Fiedler, M., Bellini, D., Chin, J.W.
PDB entry 8qwk: Structure of p53 cancer mutant Y126C
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-10-19
Authors: Markl, A.M., Balourdas, D.I., Kraemer, A., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 8qwl: Structure of p53 cancer mutant Y163C
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-10-19
Authors: Balourdas, D.I., Markl, A.M., Kraemer, A., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 8qwm: Structure of p53 cancer mutant Y205C
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-10-19
Authors: Balourdas, D.I., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 8qwn: Structure of p53 cancer mutant Y220C (hexagonal crystal form)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2023-10-19
Authors: Balourdas, D.I., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 8qwo: Structure of p53 cancer mutant Y234C
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2023-10-19
Authors: Balourdas, D.I., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 8qwp: Structure of p53 cancer mutant Y236C
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-10-19
Authors: Balourdas, D.I., Knapp, S., Joerger, A.C., Structural Genomics Consortium (SGC)
PDB entry 8qwq: Magic-angle spinning NMR Structure of Opa60 in Lipid Bilayers
Classification: CELL ADHESION
Source organism: Neisseria gonorrhoeae
Experimental method: SOLID-STATE NMR
Deposited: 2023-10-19
Authors: Forster, M.C., Andreas, L.B.
PDB entry 8qwr: Crystal structure of CotB2 variant V80L
Classification: LYASE
Source organism: Streptomyces melanosporofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-20
Authors: Dimos, N., Himpich, S., Ringel, M., Driller, R., Major, D.T., Brueck, T., Loll, B.
PDB entry 8qws: Crystal structure of CotB2 variant V80L in complex with alendronate
Classification: LYASE
Source organism: Streptomyces melanosporofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-20
Authors: Dimos, N., Himpich, S., Ringel, M., Driller, R., Major, D.T., Brueck, T., Loll, B.
PDB entry 8qwt: Ligninolytic manganese peroxidase Cst-MnP1 from Agaricales mushrooms in complex with a manganese ion
Classification: OXIDOREDUCTASE
Source organism: Cyathus striatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-10-20
Authors: Santillana, E., Romero, A.
PDB entry 8qwu: Structure of the amyloid-forming peptide LYIQNL, grown without ethanol
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-10-20
Authors: Durvanger, Z.
PDB entry 8qwv: Structure of the amyloid-forming peptide LYIQNL, grown in the presence of ethanol
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-20
Authors: Durvanger, Z.
PDB entry 8qww: Structure of the amyloid-forming peptide LYIQWL from Tc5b, grown from 10% ethanol without TFA
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-10-20
Authors: Durvanger, Z.
PDB entry 8qwx: Ligninolytic manganese peroxidase Ape-MnP1 from Agaricales mushrooms
Classification: OXIDOREDUCTASE
Source organism: Agrocybe pediades
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-20
Authors: Santillana, E., Romero, A.
PDB entry 8qwy: Crystal structure of human Casein Kinase II subunit alpha (CK2a1) in complex with 4-(6-((5-isopropoxy-2-methoxyphenyl)amino)pyrazin-2-yl)benzoic acid
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-10-20
Authors: Kraemer, A., Galal, K., Willson, T., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8qwz: Crystal structure of human Casein Kinase II subunit alpha (CK2a1) in complex with 4-(6-(6-isopropoxy-1H-indol-1-yl)pyrazin-2-yl)benzoic acid
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-10-20
Authors: Kraemer, A., Galal, K., Willson, T., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8qx0: Ligninolytic manganese peroxidase Ape-MnP1 from Agaricales mushrooms in complex with a manganese ion
Classification: OXIDOREDUCTASE
Source organism: Agrocybe pediades
Experimental method: X-RAY DIFFRACTION
Resolution: 1.247 Å
Deposited: 2023-10-20
Authors: Santillana, E., Romero, A.
PDB entry 8qx1: Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 R886G mutant with bound malate
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94451 Å
Deposited: 2023-10-20
Authors: Loris, R., Haesaerts, S., Larsen, P.B.
PDB entry 8qx2: Aplysia californica acetylcholine-binding protein in complex with racemic spiroimine (+)/(-)-4
Classification: CHOLINE-BINDING PROTEIN
Source organism: Aplysia californica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-10-20
Authors: Sulzenbacher, G., Bourne, Y., Marchot, P.
PDB entry 8qx3: Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 R886G mutant
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94715 Å
Deposited: 2023-10-21
Authors: Loris, R., Haesaerts, S., Larsen, P.B.
PDB entry 8qx4: Sulfolobus acidocaldarius Archaellum filament.
Classification: PROTEIN FIBRIL
Source organism: Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.03 Å
Deposited: 2023-10-22
Authors: Isupov, M.N., Gaines, M., McLaren, M., Daum, B.
PDB entry 8qx5: Helical Carotenoid Protein 4 (HCP4) from Anabaena with bound Canthaxanthin
Classification: PHOTOSYNTHESIS
Source organism: Cyanobacteriota
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-22
Authors: Sklyar, J., Wilson, A., Kirilovsky, D., Adir, N.
PDB entry 8qx6: Novel laminarin-binding CBM X584
Classification: SUGAR BINDING PROTEIN
Source organism: Christiangramia forsetii KT0803
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-22
Authors: Zuehlke, M.K., Jeudy, A., Czjzek, M.
PDB entry 8qx7: Apo-C-Terminal Domain Homolog of the Orange Carotenoid Protein from Anabaena at a resolution of 1.95 Angstroms
Classification: PHOTOSYNTHESIS
Source organism: Cyanobacteriota
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-10-22
Authors: Sklyar, J., Wilson, A., Kirilovsky, D., Adir, N.
PDB entry 8qx8: Endosomal membrane tethering complex CORVET
Classification: ENDOCYTOSIS
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2023-10-23
Authors: Shvarev, D., Ungermann, C., Moeller, A.
PDB entry 8qx9: TDP-43 amyloid fibrils: Morphology-1a
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2023-10-24
Authors: Sharma, K., Shenoy, J., Loquet, A., Schmidt, M., Faendrich, M.
PDB entry 8qxa: TDP-43 amyloid fibrils: Morphology-1b
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2023-10-24
Authors: Sharma, K., Shenoy, J., Loquet, A., Schmidt, M., Faendrich, M.
PDB entry 8qxb: TDP-43 amyloid fibrils: Morphology-2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2023-10-24
Authors: Sharma, K., Shenoy, J., Loquet, A., Schmidt, M., Faendrich, M.
PDB entry 8qxc: Crystal structure of antibody Fab MIL-3 with PenG-Lys
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-24
Authors: Moynie, L., Naismith, J.H.
PDB entry 8qxd: Cryo-EM structure of the cross-exon pre-B complex
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.6 Å
Deposited: 2023-10-24
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qxi: SipA solution structure
Classification: UNKNOWN FUNCTION
Source organism: Synechocystis
Experimental method: SOLUTION NMR
Deposited: 2023-10-24
Authors: Neira, J.L.
PDB entry 8qxj: Cryo-EM structure of tetrameric human SAMHD1 with dApNHpp
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-10-24
Authors: Acton, O.J., Sheppard, D., Rosenthal, P.B., Taylor, I.A.
PDB entry 8qxk: Cryo-EM structure of tetrameric human SAMHD1 State I - Tense
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-10-24
Authors: Acton, O.J., Sheppard, D., Rosenthal, P.B., Taylor, I.A.
PDB entry 8qxl: Cryo-EM structure of tetrameric human SAMHD1 State II - Hemi-relaxed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2023-10-24
Authors: Acton, O.J., Sheppard, D., Rosenthal, P.B., Taylor, I.A.
PDB entry 8qxm: Cryo-EM structure of tetrameric human SAMHD1 State III - Relaxed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-10-24
Authors: Acton, O.J., Sheppard, D., Rosenthal, P.B., Taylor, I.A.
PDB entry 8qxn: Cryo-EM structure of tetrameric human SAMHD1 State IV - Depleted relaxed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-10-24
Authors: Acton, O.J., Sheppard, D., Rosenthal, P.B., Taylor, I.A.
PDB entry 8qxo: Cryo-EM structure of tetrameric human SAMHD1 State V - Depleted relaxed
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-10-24
Authors: Acton, O.J., Sheppard, D., Rosenthal, P.B., Taylor, I.A.
PDB entry 8qxp: Crystal structure of the outer membrane porin OmpW from Klebsiella pneumoniae
Classification: MEMBRANE PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-10-24
Authors: Seddon, C., Beis, K.
PDB entry 8qxq: PsiM in complex with SAH and psilocybin
Classification: TRANSFERASE
Source organism: Psilocybe cubensis
Experimental method: X-RAY DIFFRACTION
Resolution: 0.94 Å
Deposited: 2023-10-24
Authors: Werten, S., Hudspeth, J., Rupp, B.
PDB entry 8qxs: CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with wide GroEL7 trans ring conformation
Classification: CHAPERONE
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-10-25
Authors: Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.
PDB entry 8qxt: CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with narrow GroEL7 trans ring conformation
Classification: CHAPERONE
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-10-25
Authors: Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.
PDB entry 8qxu: In situ structure average of GroEL14-GroES7 complexes with wide GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography
Classification: CHAPERONE
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2023-10-25
Authors: Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.
PDB entry 8qxv: In situ structure average of GroEL14-GroES7 complexes with narrow GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography
Classification: CHAPERONE
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.6 Å
Deposited: 2023-10-25
Authors: Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.
PDB entry 8qxw: HCMV DNA polymerase processivity factor UL44 unphosphorylated NLS 410-433 bound to mouse importin alpha 2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-25
Authors: Cross, E.M., Marin, O., Ariawan, D., Aragao, D., Cozza, G., Di Iorio, E., Forwood, J.K., Alvisi, G.
PDB entry 8qxx: HCMV DNA polymerase processivity factor UL44 phosphorylated NLS 410-433 bound to mouse importin alpha 2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-25
Authors: Cross, E.M., Marin, O., Ariawan, D., Aragao, D., Cozza, G., Di Iorio, E., Forwood, J.K., Alvisi, G.
PDB entry 8qxy: Xylanase from Bacillus circulans mutant E78Q bound to xylotriose
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-10-25
Authors: Chikunova, A., Saberi, M., Ubbink, M.
PDB entry 8qxz: Xylanase from Bacillus circulans mutant E78Q/Y69A
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-10-25
Authors: Chikunova, A., Saberi, M., Ubbink, M.
PDB entry 8qy0: Xylanase from Bacillus circulans mutant E78Q/Y69A bound to xylotriose
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-25
Authors: Chikunova, A., Saberi, M., Ubbink, M.
PDB entry 8qy1: Xylanase from Bacillus circulans mutant E78Q/Y69A bound to xylohexaose
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-25
Authors: Chikunova, A., Saberi, M., Ubbink, M.
PDB entry 8qy2: Xylanase from Bacillus circulans mutant E78Q/F125A
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-25
Authors: Chikunova, A., Saberi, M., Ubbink, M.
PDB entry 8qy3: Xylanase from Bacillus circulans mutant E78Q/F125A bound to xylotriose
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-10-25
Authors: Chikunova, A., Saberi, M., Ubbink, M.
PDB entry 8qy4: Structure of interleukin 11 (gp130 P496L mutant).
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-10-25
Authors: Gardner, S., Bubeck, D., Jin, Y.
PDB entry 8qy5: Structure of interleukin 6.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-25
Authors: Gardner, S., Bubeck, D., Jin, Y.
PDB entry 8qy6: Structure of interleukin 6 (gp130 P496L mutant).
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-10-25
Authors: Gardner, S., Bubeck, D., Jin, Y.
PDB entry 8qy7: Zorya anti-bacteriophage defense system ZorD apo form
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-10-25
Authors: Hu, H., Taylor, N.M.I.
PDB entry 8qy9: J22.9-H, fully humanized Fab Fragment based on chimeric J22.9-xi IgG against BCMA
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-10-25
Authors: Marino, S.F., Daumke, O.
PDB entry 8qya: J22.9-FNY, fully humanized, CDR optimized Fab Fragment based on chimeric J22.9-xi IgG against BCMA; with VH CDR2 glycosylation
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-10-25
Authors: Marino, S.F., Daumke, O.
PDB entry 8qyb: J22.9-ISY, fully humanized and CDR optimized Fab Fragment based on chimeric J22.9-xi IgG against BCMA
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2023-10-25
Authors: Marino, S.F., Daumke, O.
PDB entry 8qyc: Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-10-25
Authors: Hu, H., Taylor, N.M.I.
PDB entry 8qyd: Zorya anti-bacteriophage defense system ZorAB
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2023-10-25
Authors: Hu, H., Taylor, N.M.I.
PDB entry 8qye: Catalytic core of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) concieved by deep network hallucination: dEngBF4
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-10-25
Authors: Aghajari, N.
PDB entry 8qyf: Crystal structure of ClpP from Staphylococcus epidermidis in complex with ixazomib
Classification: HYDROLASE
Source organism: Staphylococcus epidermidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-10-26
Authors: Franca, B.A., Rohde, H., Betzel, C.
PDB entry 8qyg: Crystal structure of Nitroreductase from Bacillus tequilensis
Classification: OXIDOREDUCTASE
Source organism: Bacillus tequilensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-10-26
Authors: Rozeboom, H.J., Russo, S., Fraaije, M.W., Poelarends, G.J.
PDB entry 8qyh: Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-10-26
Authors: Hu, H., Taylor, N.M.I.
PDB entry 8qyi: OleP in complex with lithocholic acid in high salt crystallization conditions
Classification: OXIDOREDUCTASE
Source organism: Streptomyces antibioticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-10-26
Authors: Fata, F., Costanzo, A., Freda, I., Gugole, E., Bulfaro, G., Barbizzi, L., Di Renzo, M., Savino, C., Vallone, B., Montemiglio, L.C.
PDB entry 8qyj: Human 20S proteasome assembly structure 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-10-26
Authors: Schulman, B.A., Hanna, J.W., Harper, J.W., Adolf, F., Du, J., Rawson, S.D., Walsh Jr, R.M., Goodall, E.A.
PDB entry 8qyk: Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.07 Å
Deposited: 2023-10-26
Authors: Hu, H., Taylor, N.M.I.
PDB entry 8qyl: Human 20S proteasome assembly intermediate structure 2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2023-10-26
Authors: Schulman, B.A., Hanna, J.W., Harper, J.W., Adolf, F., Du, J., Rawson, S.D., Walsh Jr, R.M., Goodall, E.A.
PDB entry 8qym: Human 20S proteasome assembly intermediate structure 3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-10-26
Authors: Schulman, B.A., Hanna, J.W., Harper, J.W., Adolf, F., Du, J., Rawson, S.D., Walsh Jr, R.M., Goodall, E.A.
PDB entry 8qyn: Human 20S proteasome assembly intermediate structure 5
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-10-26
Authors: Schulman, B.A., Hanna, J.W., Harper, J.W., Adolf, F., Du, J., Rawson, S.D., Walsh Jr, R.M., Goodall, E.A.
PDB entry 8qyo: Human proteasome 20S core particle
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-10-26
Authors: Schulman, B.A., Hanna, J.W., Harper, J.W., Adolf, F., Du, J., Rawson, S.D., Walsh Jr, R.M., Goodall, E.A.
PDB entry 8qyp: Beta-cardiac myosin motor domain in the pre-powerstroke state
Classification: CONTRACTILE PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.759 Å
Deposited: 2023-10-26
Authors: Robert-Paganin, J., Kikuti, C., Auguin, D., Rety, S., David, A., Houdusse, A.
PDB entry 8qyq: Beta-cardiac myosin S1 fragment in the pre-powerstroke state complexed to Mavacamten
Classification: CONTRACTILE PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-10-26
Authors: Robert-Paganin, J., Kikuti, C., Auguin, D., Rety, S., David, A., Houdusse, A.
PDB entry 8qyr: Beta-cardiac myosin motor domain in the pre-powerstroke state complexed to Mavacamten
Classification: CONTRACTILE PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-10-26
Authors: Robert-Paganin, J., Kikuti, C., Auguin, D., Rety, S., David, A., Houdusse, A.
PDB entry 8qys: Human preholo proteasome 20S core particle
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2023-10-26
Authors: Schulman, B.A., Hanna, J.W., Harper, J.W., Adolf, F., Du, J., Rawson, S.D., Walsh Jr, R.M., Goodall, E.A.
PDB entry 8qyt: Human Pyridoxine-5'-phosphate oxidase in complex with PLP
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-10-26
Authors: Antonelli, L., Ilari, A., Fiorillo, A.
PDB entry 8qyu: Beta-cardiac myosin S1 fragment in the pre-powerstroke state complexed to Omecamtiv mecarbil
Classification: CONTRACTILE PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-10-26
Authors: Robert-Paganin, J., Kikuti, C., Auguin, D., Rety, S., David, A., Houdusse, A.
PDB entry 8qyv: SWR1-hexasome complex
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-26
Authors: Jalal, A.S.B., Wigley, D.B.
PDB entry 8qyw: Human Pyridoxine-5'-phosphate oxidase mutant R225H
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.746 Å
Deposited: 2023-10-26
Authors: Antonelli, L., Ilari, A., Fiorillo, A.
PDB entry 8qyx: Human 60S ribosomal subunit
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.78 Å
Deposited: 2023-10-26
Authors: Wiechert, F., Schacherl, M., Sprink, T.
PDB entry 8qyy: Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2023-10-26
Authors: Hu, H., Taylor, N.M.I.
PDB entry 8qyz: Crystal structure of hiNES2 in complex with Xpo1 and RanGTP
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae S288C; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-10-26
Authors: Rymarenko, O., Huyton, T., Gorlich, D.
PDB entry 8qz0: SWR1-hexasome-dimer complex
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-26
Authors: Jalal, A.S.B., Wigley, D.B.
PDB entry 8qz1: Crystal structure of human two pore domain potassium ion channel TREK-2 (K2P10.1) in complex with a nanobody (Nb58)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.588 Å
Deposited: 2023-10-26
Authors: Rodstrom, K.E.J., Pike, A.C.W., Baronina, A., Ang, J., Bushell, S.R., Chalk, R., Mukhopadhyay, S.M.M., Pardon, E., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Burgess-Brown, N.A., Tucker, S.J., Steyaert, J., Carpenter, E.P., Structural Genomics Consortium (SGC)
PDB entry 8qz2: Crystal structure of human two pore domain potassium ion channel TREK-2 (K2P10.1) in complex with an inhibitory nanobody (Nb61)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-10-26
Authors: Baronina, A., Pike, A.C.W., Rodstrom, K.E.J., Ang, J., Bushell, S.R., Chalk, R., Mukhopadhyay, S.M.M., Pardon, E., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Burgess-Brown, N.A., Tucker, S.J., Steyaert, J., Carpenter, E.P., Structural Genomics Consortium (SGC)
PDB entry 8qz3: Crystal structure of human two pore domain potassium ion channel TREK-2 (K2P10.1) in complex with an activatory nanobody (Nb67)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-10-26
Authors: Baronina, A., Pike, A.C.W., Rodstrom, K.E.J., Ang, J., Bushell, S.R., Chalk, R., Mukhopadhyay, S.M.M., Pardon, E., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Burgess-Brown, N.A., Tucker, S.J., Steyaert, J., Carpenter, E.P., Structural Genomics Consortium (SGC)
PDB entry 8qz4: Crystal structure of human two pore domain potassium ion channel TREK-2 (K2P10.1) in complex with an activatory nanobody (Nb76)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-10-26
Authors: Rodstrom, K.E.J., Pike, A.C.W., Baronina, A., Ang, J., Bushell, S.R., Chalk, R., Mukhopadhyay, S.M.M., Pardon, E., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Burgess-Brown, N.A., Tucker, S.J., Steyaert, J., Carpenter, E.P., Structural Genomics Consortium (SGC)
PDB entry 8qz5: Alpha-1-antitrypsin (Tyr244Phe) in the native conformation
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-10-26
Authors: Aldobiyan, I., Lomas, D.A., Irving, J.A.
PDB entry 8qz6: Structure of human ceramide synthase 6 (CerS6) bound to C16:0
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-26
Authors: Pascoa, T.C., Pike, A.C.W., Chi, G., Stefanic, S., Quigley, A., Chalk, R., Mukhopadhyay, S.M.M., Venkaya, S., Dix, C., Moreira, T., Tessitore, A., Cole, V., Chu, A., Elkins, J.M., Pautsch, A., Schnapp, G., Carpenter, E.P., Sauer, D.B.
PDB entry 8qz7: Structure of human ceramide synthase 6 (CerS6) in complex with N-palmitoyl fumonisin B1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-26
Authors: Pascoa, T.C., Pike, A.C.W., Chi, G., Stefanic, S., Quigley, A., Chalk, R., Mukhopadhyay, S.M.M., Venkaya, S., Dix, C., Moreira, T., Tessitore, A., Cole, V., Chu, A., Elkins, J.M., Pautsch, A., Schnapp, G., Carpenter, E.P., Sauer, D.B.
PDB entry 8qz8: Tilapia Lake Virus polymerase in vRNA pre-termination state (transcriptase conformation)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-10-26
Authors: Arragain, B., Cusack, S.
PDB entry 8qz9: Human 20S proteasome assembly intermediate structure 4
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-10-26
Authors: Schulman, B.A., Hanna, J.W., Harper, J.W., Adolf, F., Du, J., Rawson, S.D., Walsh Jr, R.M., Goodall, E.A.
PDB entry 8qza: D-2-hydroxyacid dehydrogenase (D2-HDH) from Haloferax mediterranei apo-enzyme (2.25 A resolution)
Classification: OXIDOREDUCTASE
Source organism: Haloferax mediterranei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.252 Å
Deposited: 2023-10-26
Authors: Baker, P.J., Barrett, J.R., Dakhil, A.A.A.B., Domenech, J., Bisson, C., Pramanpol, N., Sedelnikova, S.E., Ferrer, J., Rice, D.W.
PDB entry 8qzb: D-2-hydroxyacid dehydrogenase (D2HDH) from Haloferax mediterranei in complex with 2-ketohexanoic acid, NAD+ and chloride (1.16 A resolution)
Classification: OXIDOREDUCTASE
Source organism: Haloferax mediterranei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2023-10-26
Authors: Baker, P.J., Barrett, J.R., Dakhil, A.A.A.B., Domenech, J., Bisson, C., Pramanpol, N., Ferrer, J., Rice, D.W.
PDB entry 8qzc: Structure of calcium-bound mTMEM16A(ac)-L647V/I733V chloride channel at 3.29 A resolution
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-10-26
Authors: Lam, A.K.M., Dutzler, R.
PDB entry 8qzd: Soluble epoxide hydrolase in complex with Epoxykinin
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-10-27
Authors: Kumar, A., Ehrler, J.M.H., Ziegler, S., Doetsch, L., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8qze: Heme-domain BM3 variant 21B3_F87V-A328F
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-10-27
Authors: Opperman, D.J., Ebrecht, A.C., Aschenbrenner, J.C.
PDB entry 8qzf: Heme-domain BM3 mutant T268E
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-10-27
Authors: Opperman, D.J., Ebrecht, A.C., Aschenbrenner, J.C.
PDB entry 8qzg: 1,3 L,D-transpeptidase from Gluconobacter oxydans
Classification: TRANSFERASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-10-27
Authors: ter Beek, J., Berntsson, R.P.
PDB entry 8qzh: Crystal structure of apo-PptT from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-27
Authors: Gavalda, S., Carivenc, C., Mourey, L., Pedelacq, J.D.
PDB entry 8qzi: Crystal structure of PptT-ACP from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis; Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-10-27
Authors: Gavalda, S., Mourey, L., Pedelacq, J.D.
PDB entry 8qzj: Crystal structure of PptT-ADP from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-27
Authors: Gavalda, S., Mourey, L., Pedelacq, J.D.
PDB entry 8qzk: Catalytic core of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) concieved by deep network hallucination: dEngBF4 Hexagonal form
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2023-10-27
Authors: Aghajari, N., Hansen, A.L., Thiesen, F.F., Crehuet, R., Marcos, E., Willemoes, M.
PDB entry 8qzl: Single particle cryo-EM co-structure of Klebsiella pneumoniae AcrB with the BDM91288 efflux pump inhibitor at 3.42 Angstrom resolution
Classification: TRANSPORT PROTEIN
Source organism: Klebsiella pneumoniae subsp. pneumoniae DSM 30104 = JCM 1662 = NBRC 14940
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2023-10-27
Authors: Boernsen, C., Mueller, R.T., Pos, K.M., Frangakis, A.S.
PDB entry 8qzm: Structure of DNMT3A1 UDR region bound to H2AK119ub nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-27
Authors: Burdett, H., Wapenaar, H., Wilson, M.D.
PDB entry 8qzn: DARPin-Armadillo fusion protein with a selected Tyrosin pocket binding to the fused target peptide
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-10-27
Authors: Stark, Y., Menard, F., Jeliazkov, J., Ernst, P., Chembath, A., Ashraf, M., Hine, A., Plueckthun, A.
PDB entry 8qzo: Crystal structure of heterodimeric complex of CdpB1 and CdpB2 from A. fulgidus
Classification: CELL CYCLE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-10-27
Authors: Ciziene, D., Bellini, D., Lowe, J.
PDB entry 8qzp: Structure of the non-mitochondrial citrate synthase from Ananas comosus
Classification: TRANSFERASE
Source organism: Ananas comosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.15 Å
Deposited: 2023-10-28
Authors: Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.
PDB entry 8qzq: Single particle cryo-EM co-structure of E. coli AcrB with bound BDM91531 inhibitor
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-10-29
Authors: Boernsen, C., Mueller, R.T., Pos, K.M., Frangakis, A.S.
PDB entry 8qzr: SARS-CoV-2 delta RBD complexed with BA.4/5-9 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.77 Å
Deposited: 2023-10-29
Authors: Zhou, D., Ren, J., Stuart, D.I.
PDB entry 8qzs: Cryo-EM structure of the cross-exon B-like complex
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-10-29
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qzt: Single particle cryo-EM co-structure of E. coli AcrB with bound BDM91531 inhibitor at 3.52 A resolution
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-10-29
Authors: Boernsen, C., Mueller, R.T., Pos, K.M., Frangakis, A.S.
PDB entry 8qzu: XhpG hydrolase mutant S98A of Xenorhabdus hominickii
Classification: BIOSYNTHETIC PROTEIN
Source organism: Xenorhabdus hominickii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2023-10-30
Authors: Calderari, A., Gruez, A., Weissman, K.J.
PDB entry 8qzv: Crystal structure of translation factor eIF5A from Trichomonas vaginalis
Classification: TRANSLATION
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-10-30
Authors: Wator, E., Wilk, P., Grudnik, P.
PDB entry 8qzw: Crystal structure of deoxyhypusine synthase from Trichomonas vaginalis
Classification: TRANSFERASE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-10-30
Authors: Wator, E., Wilk, P., Grudnik, P.
PDB entry 8qzx: CryoEM structure of DHS-eIF5A complex structure from Trichomonas vaginalis
Classification: TRANSLATION
Source organism: Trichomonas vaginalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-10-30
Authors: Wator, E., Wilk, P., Grudnik, P.
PDB entry 8qzy: Structural and biochemical characterization of diaminopimelate epimerase from Pseudomonas aeruginosa
Classification: ISOMERASE
Source organism: Pseudomonas aeruginosa PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-10-30
Authors: Schneider, P., Blankenfeldt, W.
PDB entry 8qzz: Crystal structure of human eIF2 alpha-gamma complexed with PPP1R15A_420-452
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-10-30
Authors: Yan, Y., Ron, D.
PDB entry 8r00: Crystal structure of the human PXR ligand-binding domain in complex with furanodienone
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-10-30
Authors: Bourguet, W., Carivenc, C., Sirounian, S.