LiteFold/PDB huggingface dataset:
PDB entry 8egb: Cryo-EM structure of consensus elemental paused elongation complex with an unfolded TL
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-12
Authors: Kang, J.Y., Chen, J., Llewellyn, E., Landick, R., Darst, S.A.
PDB entry 8egd: Branched chain ketoacid dehydrogenase kinase in complex with inhibitor
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.047 Å
Deposited: 2022-09-12
Authors: Liu, S.
PDB entry 8egf: Branched chain ketoacid dehydrogenase kinase in complex with inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-09-12
Authors: Liu, S.
PDB entry 8egi: X-ray structure of carbonmonoxy hemoglobin in complex with VZHE039-NO
Classification: OXYGEN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-09-12
Authors: Donkor, A.K., Musayev, F.N., Safo, M.K.
PDB entry 8egk: Re-refinement of Crystal Structure of NosGet3d, the All4481 protein from Nostoc sp. PCC 7120
Classification: CHAPERONE
Source organism: Nostoc sp. PCC 7120 = FACHB-418
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-09-12
Authors: Barlow, A.N., Manu, M.S., Ramasamy, S., Clemons Jr., W.M.
PDB entry 8egl: Crystal Structure of Guanylate kinase from Pseudomonas aeruginosa PAO1 in complex with GMP and ADP
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-09-12
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8egm: Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa in complex with compound AZ13644908
Classification: LIGASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-09-12
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8egn: Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa in complex with ligand AZ-13643701
Classification: LIGASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-09-12
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8egq: Branched chain ketoacid dehydrogenase kinase complexes
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.955 Å
Deposited: 2022-09-13
Authors: Liu, S.
PDB entry 8egr: Upper tail structure of Staphylococcus phage Andhra
Classification: VIRUS
Source organism: Staphylococcus phage Andhra
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2022-09-13
Authors: Kizziah, J.L., Hawkins, N.C., Dokland, T.
PDB entry 8egs: Tail knob structure of Staphylococcus phage Andhra
Classification: VIRUS
Source organism: Staphylococcus phage Andhra
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2022-09-13
Authors: Kizziah, J.L., Hawkins, N.C., Dokland, T.
PDB entry 8egt: Capsid structure of Staphylococcus phage Andhra
Classification: VIRUS
Source organism: Staphylococcus phage Andhra
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-09-13
Authors: Hawkins, N.C., Kizziah, J.L., Dokland, T.
PDB entry 8egu: Branched chain ketoacid dehydrogenase kinase complexes
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.923 Å
Deposited: 2022-09-13
Authors: Liu, S.
PDB entry 8egv: Co-crystal structure of Chaetomium glucosidase with compound 12
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-09-13
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8egw: Complex of Fat4(EC1-4) bound to Dchs1(EC1-3)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-09-13
Authors: Medina, E., Luca, V.C.
PDB entry 8egx: Complex of Fat4(EC1-4) bound to Dchs1(EC1-4)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.688 Å
Deposited: 2022-09-13
Authors: Medina, E., Luca, V.C.
PDB entry 8egy: Engineered holo tyrosine synthase (TmTyrS1) derived from T. maritima TrpB
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-09-13
Authors: Porter, N.J., Almhjell, P.J., Arnold, F.H.
PDB entry 8egz: Engineered tyrosine synthase (TmTyrS1) derived from T. maritima TrpB with Ser bound as the amino-acrylate intermediate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-09-13
Authors: Porter, N.J., Almhjell, P.J., Arnold, F.H.
PDB entry 8eh0: Engineered tyrosine synthase (TmTyrS1) derived from T. maritima TrpB with Ser bound as the amino-acrylate intermediate and complexed with quinoline N-oxide
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-13
Authors: Porter, N.J., Almhjell, P.J., Arnold, F.H.
PDB entry 8eh1: Engineered tyrosine synthase (TmTyrS1) derived from T. maritima TrpB with Ser bound as the amino-acrylate intermediate and complexed with 4-hydroxyquinoline
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-13
Authors: Porter, N.J., Almhjell, P.J., Arnold, F.H.
PDB entry 8eh2: Short-chain dehydrogenase/reductase (SDR) from Acinetobacter baumannii
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-09-13
Authors: Shaw, K.
PDB entry 8eh5: Cryo-EM structure of L9 Fab in complex with rsCSP
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-09-13
Authors: Martin, G.M., Ward, A.B.
PDB entry 8eh8: Cryo-EM structure of his-elemental paused elongation complex with a folded TL and a rotated RH-FL (1)
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-13
Authors: Kang, J.Y., Chen, J., Llewellyn, E., Landick, R., Darst, S.A.
PDB entry 8eh9: Cryo-EM structure of his-elemental paused elongation complex with a folded TL and a rotated RH-FL (2)
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-09-13
Authors: Kang, J.Y., Chen, J., Llewellyn, E., Landick, R., Darst, S.A.
PDB entry 8eha: Cryo-EM structure of his-elemental paused elongation complex with a folded TL and a rotated RH-FL (out)
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-09-14
Authors: Kang, J.Y., Chen, J., Llewellyn, E., Landick, R., Darst, S.A.
PDB entry 8ehb: Structure of Tannerella forsythia selenomethionine-derivatized potempin D mutant I53M
Classification: HYDROLASE INHIBITOR
Source organism: Tannerella forsythia (strain ATCC 43037 / JCM 10827 / CCUG 21028 A / KCTC 5666 / FDC 338)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-09-14
Authors: Gomis-Ruth, F.X.
PDB entry 8ehc: Structure of Tannerella forsythia selenomethionine-derivatized potempin E
Classification: HYDROLASE INHIBITOR
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-14
Authors: Gomis-Ruth, F.X.
PDB entry 8ehd: Structure of Tannerella forsythia potempin E
Classification: HYDROLASE INHIBITOR
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-14
Authors: Gomis-Ruth, F.X.
PDB entry 8ehe: Structure of Tannerella forsythia potempin C in complex with mirolase
Classification: HYDROLASE INHIBITOR
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-09-14
Authors: Gomis-Ruth, F.X.
PDB entry 8ehf: Cryo-EM structure of his-elemental paused elongation complex with an unfolded TL (1)
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-14
Authors: Kang, J.Y., Chen, J., Llewellyn, E., Landick, R., Darst, S.A.
PDB entry 8ehg: Rabbit muscle aldolase determined using single-particle cryo-EM with Apollo camera.
Classification: SUGAR BINDING PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2022-09-14
Authors: Peng, R., Fu, X., Mendez, J.H., Randolph, P.H., Bammes, B., Stagg, S.M.
PDB entry 8ehh: Crystal structure of the class A extended-spectrum beta-lactamase CTX-M-96 in complex with relebactam at 1.03 Angstrom resolution
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2022-09-14
Authors: Power, P., Ghiglione, B., Bonomo, R.A., Rodriguez, M.M., Gutkind, G., Klinke, S.
PDB entry 8ehi: Cryo-EM structure of his-elemental paused elongation complex with an unfolded TL (2)
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2022-09-14
Authors: Kang, J.Y., Chen, J., Llewellyn, E., Landick, R., Darst, S.A.
PDB entry 8ehj: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) H172Q Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2022-09-14
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8ehk: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) T135I Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2022-09-14
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8ehl: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) S144M Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-09-14
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8ehm: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) S144F Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-09-14
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8ehn: PRRSV-1 PLP2 domain
Classification: VIRAL PROTEIN
Source organism: Porcine reproductive and respiratory syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-09-14
Authors: Bailey-Elkin, B.A., Mark, B.L.
PDB entry 8eho: PRRSV-1 PLP2 domain bound to ubiquitin
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Porcine reproductive and respiratory syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-09-14
Authors: Bailey-Elkin, B.A., Mark, B.L.
PDB entry 8ehp: Co-crystal structure of Chaetomium glucosidase with compound 13
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2022-09-14
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8ehq: Mycobacterium tuberculosis paused transcription complex with Bacillus subtilis NusG
Classification: TRANSCRIPTION
Source organism: Bacillus subtilis subsp. subtilis str. 168; Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-14
Authors: Vishwakarma, R.K., Murakami, K.S.
PDB entry 8ehr: Cryo-EM reconstruction of the CFA/I bacterial adhesion pili
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-14
Authors: Doran, M.H., Bullitt, E.
PDB entry 8ehs: Cryo-EM reconstruction of the CS17 bacterial adhesion pili
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-14
Authors: Doran, M.H., Bullitt, E.
PDB entry 8eht: Cryo-EM reconstruction of the CS20 bacterial adhesion pili
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-14
Authors: Doran, M.H., Bullitt, E.
PDB entry 8ehu: Crystal structure of the environmental CRH-1 class A carbapenemase at 1.1 Angstrom resolution
Classification: ANTIMICROBIAL PROTEIN
Source organism: Chromobacterium haemolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-09-14
Authors: Power, P., Brunetti, F., Ghiglione, B., Guardabassi, L., Gutkind, G., Klinke, S.
PDB entry 8ehv: Kelch domain of human KEAP1 bound to Nrf2 cyclic peptide, c[DhA-GDPET(bAla)E]
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-09-14
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8ehw: cryo-EM structure of TMEM63A in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-14
Authors: Zheng, W., Fu, T.M., Holt, J.R.
PDB entry 8ehx: cryo-EM structure of TMEM63B in LMNG
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-14
Authors: Zheng, W., Fu, T.M., Holt, J.R.
PDB entry 8ehz: Crystal structure of the STUB1 TPR domain in complex with H317, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-09-14
Authors: Li, K., Swiecicki, J.-M., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei0: Crystal structure of the STUB1 TPR domain in complex with H318, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-09-14
Authors: Li, K., Swiecicki, J.-M., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei1: Crystal structure of the N-terminal domain of CUL4B in complex with H316, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-09-14
Authors: Li, K., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei2: Crystal structure of the N-terminal domain of CUL5 in complex with H314, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-09-14
Authors: Li, K., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei3: Crystal structure of VHL in complex with H313, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2022-09-14
Authors: Li, K., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei4: Crystal structure of the WWP1 HECT domain in complex with H302, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2022-09-14
Authors: Li, K., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei5: Crystal structure of the WWP2 HECT domain in complex with H301, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-09-14
Authors: Li, K., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei6: Crystal structure of the WWP2 HECT domain in complex with H305, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2022-09-14
Authors: Li, K., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei7: Crystal structure of the WWP2 HECT domain in complex with H304, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2022-09-14
Authors: Li, K., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei8: Crystal structure of the WWP2 HECT domain in complex with H308, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-09-14
Authors: Li, K., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8ei9: Crystal structure of beta-catenin and the MDM2 p53-binding domain in complex with H332, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2022-09-14
Authors: Li, K., Travaline, T.L., Swiecicki, J.-M., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8eia: Crystal structure of beta-catenin and the MDM2 p53-binding domain in complex with H333, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2022-09-14
Authors: Li, K., Travaline, T.L., Swiecicki, J.-M., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8eib: Crystal structure of beta-catenin and the MDM2 p53-binding domain in complex with H329, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.76 Å
Deposited: 2022-09-14
Authors: Li, K., Travaline, T.L., Swiecicki, J.-M., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8eic: Crystal structure of beta-catenin and the MDM2 p53-binding domain in complex with H330, a Helicon Polypeptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2022-09-14
Authors: Li, K., Travaline, T.L., Swiecicki, J.-M., Tokareva, O.S., Thomson, T.M., Verdine, G.L., McGee, J.H.
PDB entry 8eid: Co-crystal structure of Chaetomium glucosidase with compound 14
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-09-14
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8eie: KRAS4b K117N 1-185 bound to GNP-Mg2+
Classification: ONCOPROTEIN, Hydrolase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2022-09-14
Authors: Betts, L., Rossman, K.L.
PDB entry 8eif: Crystal structure of unmodified Pseudomonas aeruginosa protein PA0709
Classification: CYTOSOLIC PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-09-14
Authors: Cuthbert, B.J., Goulding, C.W.
PDB entry 8eig: The complex of phosphorylated human delta F508 cystic fibrosis transmembrane conductance regulator (CFTR) with elexacaftor (VX-445) and ATP/Mg
Classification: ATP-Binding Protein
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-15
Authors: Fiedorczuk, K., Chen, J.
PDB entry 8eih: Cryo-EM structure of human DNMT3B homo-tetramer (form I)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-09-15
Authors: Lu, J.W., Song, J.K.
PDB entry 8eii: Cryo-EM structure of human DNMT3B homo-tetramer (form II)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2022-09-15
Authors: Lu, J.W., Song, J.K.
PDB entry 8eij: Cryo-EM structure of human DNMT3B homo-trimer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2022-09-15
Authors: Lu, J.W., Song, J.K.
PDB entry 8eik: Cryo-EM structure of human DNMT3B homo-hexamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2022-09-15
Authors: Lu, J.W., Song, J.K.
PDB entry 8eil: C-Terminal Domain of BrxL from Acinetobacter BREX type I phage restriction system
Classification: DNA BINDING PROTEIN
Source organism: Acinetobacter sp. NEB 394
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-09-15
Authors: Doyle, L.A., Stoddard, B.L., Kaiser, B.
PDB entry 8eim: Structure of ALAS with C-terminal truncation from S. cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-09-15
Authors: Tran, J.U., Brown, B.L.
PDB entry 8ein: Crystal structure of WT cyanophycin dipeptide hydrolase CphZ from Acinetobacter baylyi DSM587
Classification: HYDROLASE
Source organism: Acinetobacter baylyi ADP1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-15
Authors: Sharon, I., Schmeing, T.M.
PDB entry 8eio: The complex of phosphorylated human delta F508 cystic fibrosis transmembrane conductance regulator (CFTR) with elexacaftor (VX-445), lumacaftor (VX-809) and ATP/Mg
Classification: ATP-Binding Protein
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-15
Authors: Fiedorczuk, K., Chen, J.
PDB entry 8eip: Crystal structure of cyanophycin dipeptide hydrolase CphZ E251A from Acinetobacter baylyi DSM587 in complex with beta-Asp-Arg
Classification: HYDROLASE
Source organism: Acinetobacter baylyi ADP1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2022-09-15
Authors: Sharon, I., Schmeing, T.M.
PDB entry 8eiq: The complex of phosphorylated human delta F508 cystic fibrosis transmembrane conductance regulator (CFTR) with Trikafta [elexacaftor (VX-445), tezacaftor (VX-661), ivacaftor (VX-770)] and ATP/Mg
Classification: ATP-Binding Protein
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-15
Authors: Fiedorczuk, K., Chen, J.
PDB entry 8eir: SARS-CoV-2 polyprotein substrate regulates the stepwise Mpro cleavage reaction
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2022-09-15
Authors: Narwal, M., Edwards, T., Armache, J.P., Murakami, K.S.
PDB entry 8eis: Cryo-EM structure of octopus sensory receptor CRT1
Classification: STRUCTURAL PROTEIN
Source organism: Octopus bimaculoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-09-15
Authors: Kang, G., Kim, J.J., Allard, C.A.H., Valencia-Montoya, W.A., Bellono, N.W., Hibbs, R.E.
PDB entry 8eit: Structure of FFAR1-Gq complex bound to DHA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-15
Authors: Kumari, P., Inoue, A., Chapman, K., Lian, P., Rosenbaum, D.M.
PDB entry 8eiu: E. coli 70S ribosome with A-loop mutations U2554C and U2555C
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2022-09-15
Authors: Nissley, A.J., Penev, P.I., Watson, Z.L., Banfield, J.F., Cate, J.H.D.
PDB entry 8eiw: Cobalt(II)-substituted Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-09-15
Authors: Zheng, C., Mathews, I.I., Boxer, S.G.
PDB entry 8eix: Cobalt(II)-substituted S48A Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2022-09-15
Authors: Zheng, C., Mathews, I.I., Boxer, S.G.
PDB entry 8eiy: Cobalt(II)-substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2022-09-15
Authors: Zheng, C., Mathews, I.I., Boxer, S.G.
PDB entry 8eiz: Cryo-EM structure of squid sensory receptor CRB1
Classification: STRUCTURAL PROTEIN
Source organism: Sepioloidea lineolata
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-09-15
Authors: Kang, G., Kim, J.J., Allard, C.A.H., Valencia-Montoya, W.A., van Giesen, L., Kilian, P.B., Bai, X., Bellono, N.W., Hibbs, R.E.
PDB entry 8ej0: Crystal structure of Fe-S cluster-dependent dehydratase from Paralcaligenes ureilyticus in complex with Mg
Classification: LYASE
Source organism: Paralcaligenes ureilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-09-16
Authors: Bayaraa, T., Lonhienne, T., Guddat, L.W.
PDB entry 8ej1: Dephosphorylated human delta F508 cystic fibrosis transmembrane conductance regulator (CFTR)
Classification: ATP-BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2022-09-16
Authors: Fiedorczuk, K., Chen, J.
PDB entry 8ej3: M. tuberculosis RNAP pause escaped complex with Bacillus subtilis NusG and GMPCPP
Classification: TRANSCRIPTION
Source organism: Bacillus subtilis subsp. subtilis str. 168; Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-09-16
Authors: Vishwakarma, R.K., Murakami, K.S.
PDB entry 8ej4: Cryo-EM structure of the active NLRP3 inflammasome disk
Classification: Immune System/Transferase
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-16
Authors: Hao, W., Le, X.
PDB entry 8ej5: Tail tip structure of Staphylococcus phage Andhra
Classification: VIRUS
Source organism: Staphylococcus phage Andhra
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2022-09-16
Authors: Kizziah, J.L., Hawkins, N.C., Dokland, T.
PDB entry 8ej6: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGAGGAATGGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-09-16
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8ej7: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-09-16
Authors: Lu, J., Khan, M.B., Young, H.S., Lemieux, M.J.
PDB entry 8ej8: Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAAAGGAAGTGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-09-16
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8ej9: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-16
Authors: Lu, J., Khan, M.B., Young, H.S., Lemieux, M.J.
PDB entry 8eja: Computational design of potent and selective inhibitors of Bak and Bax
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-09-16
Authors: Bera, A.K., Berger, S.A., Baker, D.
PDB entry 8ejb: Bruton's tyrosine kinase in complex with 3-{[4-(1-acetylpiperidin-4-yl)phenyl]amino}-5-[(3R)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]pyrazine-2-carboxamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-09-16
Authors: Gajewski, S., Clifton, M.C.
PDB entry 8ejc: Structure of FFAR1-Gq complex bound to TAK-875
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-16
Authors: Kumari, P., Inoue, A., Chapman, K., Lian, P., Rosenbaum, D.M.
PDB entry 8ejd: Structure of lineage IV Lassa virus glycoprotein complex (strain Josiah)
Classification: VIRAL PROTEIN
Source organism: Lassa mammarenavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-16
Authors: Perrett, H.R., Ward, A.B.
PDB entry 8eje: Structure of lineage II Lassa virus glycoprotein complex (strain NIG08-A41)
Classification: VIRAL PROTEIN
Source organism: Lassa mammarenavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2022-09-16
Authors: Perrett, H.R., Ward, A.B.
PDB entry 8ejf: Structure of lineage V Lassa virus glycoprotein complex (strain Soromba-R)
Classification: VIRAL PROTEIN
Source organism: Lassa mammarenavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2022-09-16
Authors: Perrett, H.R., Ward, A.B.
PDB entry 8ejg: Structure of lineage VII Lassa virus glycoprotein complex (strain Togo/2016/7082)
Classification: VIRAL PROTEIN
Source organism: Lassa mammarenavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-09-16
Authors: Perrett, H.R., Ward, A.B.
PDB entry 8ejh: Lassa virus glycoprotein complex (Josiah) bound to 12.1F Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Lassa mammarenavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2022-09-16
Authors: Perrett, H.R., Ward, A.B.
PDB entry 8eji: Lassa virus glycoprotein complex (Josiah) bound to 19.7E Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Lassa mammarenavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2022-09-16
Authors: Perrett, H.R., Ward, A.B.
PDB entry 8ejj: Lassa virus glycoprotein complex (Josiah) bound to S370.7 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lassa mammarenavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2022-09-16
Authors: Perrett, H.R., Ward, A.B.
PDB entry 8ejk: Structure of FFAR1-Gq complex bound to TAK-875 in a lipid nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-17
Authors: Kumari, P., Inoue, A., Chapman, K., Lian, P., Rosenbaum, D.M.
PDB entry 8ejl: Structure of HIV-1 capsid declination in complex with CPSF6-FG peptide
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-09-17
Authors: Pornillos, O., Ganser-Pornillos, B.K., Schirra, R.T., dos Santos, N.F.B.
PDB entry 8ejm: Crystal structure of human DEAH-box helicase DHX15 in complex with SUGP1 G-patch
Classification: RNA BINDING PROTEIN,HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-17
Authors: Huang, J., Tong, L.
PDB entry 8ejn: Structure of dehaloperoxidase A in complex with 2,4-dichlorophenol
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.481 Å
Deposited: 2022-09-17
Authors: Aktar, M.S., de Serrano, V.S., Franzen, S.
PDB entry 8ejo: Crystal structure of the homeodomain of Platypus sDUX in complex with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Ornithorhynchus anatinus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2022-09-18
Authors: Yin, L., Shi, K., Aihara, H.
PDB entry 8ejp: Crystal structure of the homeodomain of Platypus sDUX in complex with DNA containing 5-Bromouracil
Classification: DNA BINDING PROTEIN/DNA
Source organism: Ornithorhynchus anatinus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.174 Å
Deposited: 2022-09-18
Authors: Yin, L., Shi, K., Aihara, H.
PDB entry 8ejr: Kelch domain of human KEAP1 bound to Nrf2 linear peptide, Ac-GDPETGE-NH2
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2022-09-18
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8ejs: Kelch domain of human KEAP1 bound to Nrf2 linear peptide, Ac-(BAla)DPETGE-NH2
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2022-09-18
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eju: The crystal structure of Pseudomonas putida PcaR
Classification: TRANSCRIPTION
Source organism: Pseudomonas putida KT2440
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2022-09-19
Authors: Pham, C., Skarina, T., Di Leo, R., Stogios, P.J., Mahadevan, R., Savchenko, A.
PDB entry 8ejv: The crystal structure of Pseudomonas putida PcaR in complex with succinate
Classification: TRANSCRIPTION
Source organism: Pseudomonas putida KT2440
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2022-09-19
Authors: Pham, C., Skarina, T., Di Leo, R., Stogios, P.J., Mahadevan, R., Savchenko, A.
PDB entry 8ejx: Crystal structure of human cyclophilin D (CypD) with in complex with the covalently bound Ebselen inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-09-19
Authors: Lovell, S., Battaile, K.P., Yan, S.
PDB entry 8ejy: [4+2] Aza-Cyclase F293A variant
Classification: ANTIBIOTIC
Source organism: Planobispora rosea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2022-09-19
Authors: Nair, S.K.
PDB entry 8ejz: [4+2] Aza-Cyclase Y293F variant
Classification: ANTIBIOTIC
Source organism: Planobispora rosea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-19
Authors: Nair, S.K.
PDB entry 8ek1: Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(dominant class)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-19
Authors: Tripathi, P., Kwong, P.D.
PDB entry 8ek3: Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAGCGGAATGGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2022-09-19
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8ek4: De novo designed ice-binding proteins from twist-constrained helices
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-09-19
Authors: Bera, A.K., De Haas, R.J.
PDB entry 8ek5: Engineered scFv 10LH bound to PHOX2B/HLA-A24:02
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2022-09-20
Authors: Garfinkle, S.E., Florio, T.J., Sgourakis, N.G.
PDB entry 8ek6: UCA Y35N (unbound) Fab from CH65-CH67 lineage
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.954 Å
Deposited: 2022-09-20
Authors: Maurer, D.P., Schmidt, A.G.
PDB entry 8ek7: Crystal structure of Hepes and Mg bound 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase from Klebsiella aerogenes
Classification: ISOMERASE
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-09-20
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8ek8: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAGAAGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2022-09-20
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8ek9: Crystal structure of the class A carbapenemase CRH-1 in complex with avibactam at 1.4 Angstrom resolution
Classification: ANTIMICROBIAL PROTEIN
Source organism: Chromobacterium haemolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-09-20
Authors: Power, P., Brunetti, F., Ghiglione, B., Guardabassi, L., Gutkind, G., Klinke, S.
PDB entry 8eka: Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(class 2)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-09-20
Authors: Tripathi, P., Kwong, P.D.
PDB entry 8ekb: Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-20
Authors: Paranjpe, M.N., Polikanov, Y.S.
PDB entry 8ekc: Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-09-20
Authors: Rybak, M.Y., Gagnon, M.G.
PDB entry 8ekd: Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-20
Authors: Binshtein, E., Crowe, J.E.
PDB entry 8eke: Cryo-EM structure of SARS CoV-2 Mpro WT protease
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-09-20
Authors: Narwal, M., Edwards, T., Armache, J.P., Murakami, K.S.
PDB entry 8ekf: X-ray crystal structure of 311R Fab in complex with the PfCSP peptide NPNA-3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-09-20
Authors: Moskovitz, R., Wilson, I.A.
PDB entry 8ekg: MHETase variant Thr159Val, Met192Tyr, Tyr252Phe, Tyr503Trp
Classification: HYDROLASE
Source organism: Ideonella sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-09-20
Authors: Saunders, J.W., Frkic, R.L., Jackson, C.J.
PDB entry 8ekh: I-2 Y35N H35N (unbound) Fab from CH65-CH67 lineage
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-21
Authors: Maurer, D.P., Schmidt, A.G.
PDB entry 8eki: CryoEM structure of the Dsl1 complex bound to SNAREs Sec20 and Use1
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-09-21
Authors: DAmico, K.A., Jeffrey, P.D., Hughson, F.M.
PDB entry 8ekj: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAATGGAAGTGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-09-21
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8ekk: Clostridioides difficile binary toxin translocase CDTb wild-type after calcium depletion from receptor binding domain 1 (RBD1) - Class 2
Classification: TOXIN
Source organism: Clostridioides difficile R20291
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2022-09-21
Authors: Abeyawardhane, D.L., Pozharski, E.
PDB entry 8ekl: Clostridioides difficile binary toxin translocase CDTb wild-type after calcium depletion from receptor binding domain 1 (RBD1) - Class 1
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2022-09-21
Authors: Abeyawardhane, D.L., Pozharski, E.
PDB entry 8ekm: Clostridioides difficile binary toxin translocase CDTb double mutant - D623A D734A
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2022-09-21
Authors: Abeyawardhane, D.L., Pozharski, E.
PDB entry 8ekn: Co-crystal structure of Chaetomium glucosidase with compound 15
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-09-21
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8eko: Sperm whale myoglobin mutant L29H F33W F43H (F33W CuBMb)
Classification: OXIDOREDUCTASE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2022-09-21
Authors: Ledray, A.P., Dwaraknath, S., Lu, Y.
PDB entry 8ekp: Apo rat TRPV2 in nanodiscs, state 1
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2022-09-21
Authors: Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 8ekq: Apo rat TRPV2 in nanodiscs, state 2
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-09-21
Authors: Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 8ekr: Apo rat TRPV2 in nanodiscs, state 3
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-21
Authors: Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 8eks: rat TRPV2 in nanodiscs in the presence of weak acid at pH 5
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-21
Authors: Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 8ekt: CYP51 from Acanthamoeba castellanii in complex with the tetrazole-based IND inhibitor VT-1161(VT1)
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Acanthamoeba castellanii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-09-21
Authors: Hargrove, T.Y., Wawrzak, Z., Lepesheva, G.I.
PDB entry 8eku: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAATGGAATGGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-09-22
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8ekv: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGATGTGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2022-09-22
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8ekw: Cryo-EM structure of human PRDX4
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2022-09-22
Authors: Su, C.C.
PDB entry 8ekx: Structure of MBP-Mcl-1 in complex with MIK665
Classification: APOPTOSIS
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-09-22
Authors: Judge, R.A., Judd, A.S., Souers, A.J.
PDB entry 8eky: Cryo-EM structure of the human PRDX4-ErP46 complex
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2022-09-22
Authors: Su, C.C.
PDB entry 8ekz: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGGAGAAGTAGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2022-09-22
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8el0: Structure of MBP-Mcl-1 in complex with a macrocyclic compound
Classification: APOPTOSIS
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.917 Å
Deposited: 2022-09-22
Authors: Judge, R.A., Judd, A.S., Souers, A.J.
PDB entry 8el1: Structure of MBP-Mcl-1 in complex with ABBV-467
Classification: APOPTOSIS
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.406 Å
Deposited: 2022-09-22
Authors: Judge, R.A., Judd, A.S., Souers, A.J.
PDB entry 8el2: SARS-CoV-2 RBD bound to neutralizing antibody Fab ICO-hu23
Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-09-22
Authors: Besaw, J.E., Kuo, A., Morizumi, T., Ernst, O.P.
PDB entry 8el3: Light harvesting phycobiliprotein HaPE555 from the cryptophyte Hemiselmis andersenii CCMP644 in a loose interface filament
Classification: PHOTOSYNTHESIS
Source organism: Hemiselmis andersenii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-09-23
Authors: Rathbone, H.W., Michie, K.A., Laos, A.L., Curmi, P.M.G.
PDB entry 8el4: Light harvesting phycobiliprotein HaPE555 from the cryptophyte Hemiselmis andersenii CCMP644 in a tight interface filament
Classification: PHOTOSYNTHESIS
Source organism: Hemiselmis andersenii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2022-09-23
Authors: Rathbone, H.W., Michie, K.A., Laos, A.L., Curmi, P.M.G.
PDB entry 8el5: Light harvesting phycobiliprotein HaPE555 from the cryptophyte Hemiselmis andersenii CCMP644 in an alternating tight to loose interface filament
Classification: PHOTOSYNTHESIS
Source organism: Hemiselmis andersenii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2022-09-23
Authors: Rathbone, H.W., Michie, K.A., Laos, A.L., Curmi, P.M.G.
PDB entry 8el6: Light harvesting phycobiliprotein HaPE555 from the cryptophyte Hemiselmis andersenii CCMP644 with an altered helix hA/hY conformation
Classification: PHOTOSYNTHESIS
Source organism: Hemiselmis andersenii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-09-23
Authors: Rathbone, H.W., Michie, K.A., Laos, A.L., Curmi, P.M.G.
PDB entry 8el7: CryoEM structure of Resistance to Inhibitors of Cholinesterase-8B (Ric-8B) in complex with G alpha s
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-23
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8el8: CryoEM structure of Resistance to Inhibitors of Cholinesterase-8B (Ric-8B) in complex with olfactory G protein alpha olf
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-23
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8el9: Cryo-EM structure of human catalase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2022-09-23
Authors: Su, C.C.