LiteFold/PDB huggingface dataset:
PDB entry 8v7h: Human DNA polymerase eta-DNA-araC-ended primer ternary complex:ground state at pH7.0 (K+ MES) with 1 Ca2+ ion
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-12-04
Authors: Chang, C., Gao, Y.
PDB entry 8v7i: Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 1 mM Mg2+ for 1800s
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-12-04
Authors: Chang, C., Gao, Y.
PDB entry 8v7j: Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 20 mM Mg2+ for 600s
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-12-04
Authors: Chang, C., Gao, Y.
PDB entry 8v7k: Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 10 mM Mn2+ for 1800s
Classification: Transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-12-04
Authors: Chang, C., Gao, Y.
PDB entry 8v7l: Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-12-04
Authors: Chio, U.S., Palovcak, E., Armache, J.P., Narlikar, G.J., Cheng, Y.
PDB entry 8v7o: Fab fragment of human mAb #58 in complex with computationally optimized broadly reactive H1 influenza hemagglutinin X6
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2023-12-04
Authors: Nagashima, K.A., Mousa, J.J.
PDB entry 8v7p: Crystal structure of the truncated P1 pilin from Pseudomonas aeruginosa
Classification: CELL ADHESION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-12-04
Authors: Bragagnolo, N.J., Audette, G.F.
PDB entry 8v7q: IpaD (122-321) Pi-helix Mutant (delta Q148) Apo Structure
Classification: CELL INVASION
Source organism: Shigella flexneri
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-12-04
Authors: Barker, S.A., Dickenson, N.E., Johnson, S.J.
PDB entry 8v7r: PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z56772132
Classification: HYDROLASE
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-12-04
Authors: Godoy, A.S., Noske, G.D., Fairhead, M., Lithgo, R.M., Koekemoer, L., Aschenbrenner, J.C., Balcomb, B.H., Marples, P.G., Ni, X., Tomlinson, C.W.E., Wild, C., Mesquita, N.C.M.R., Oliva, G., Fearon, D., Walsh, M.A., von Delft, F.
PDB entry 8v7s: IpaD (122-321) Apo Structure
Classification: CELL INVASION
Source organism: Shigella flexneri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.708 Å
Deposited: 2023-12-04
Authors: Barker, S.A., Dickenson, N.E., Johnson, S.J., Morales, Y.
PDB entry 8v7t: Room-temperature X-ray structure of SARS-CoV-2 main protease catalytic domain (residues 1-199)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-12-04
Authors: Kovalevsky, A., Coates, L.
PDB entry 8v7u: PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z729726784
Classification: HYDROLASE
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-12-04
Authors: Godoy, A.S., Noske, G.D., Fairhead, M., Lithgo, R.M., Koekemoer, L., Aschenbrenner, J.C., Balcomb, B.H., Marples, P.G., Ni, X., Tomlinson, C.W.E., Wild, C., Mesquita, N.C.M.R., Oliva, G., Fearon, D., Walsh, M.A., von Delft, F.
PDB entry 8v7w: Room-temperature X-ray structure of SARS-CoV-2 main protease catalytic domain C145A precursor, residues nsp4(-6)-1-199-6H
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-04
Authors: Kovalevsky, A., Coates, L.
PDB entry 8v7x: Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle expressed in HEK293
Classification: VIRUS LIKE PARTICLE
Source organism: TTV-like mini virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-04
Authors: Rajendra, B., Swanson, K.
PDB entry 8v7z: Phosphorylated, ATP-bound, E1371Q human cystic fibrosis transmembrane conductance regulator (E1371Q-CFTR)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-04
Authors: Gao, X., Hwang, T.
PDB entry 8v80: Alpha7-nicotinic acetylcholine receptor bound to epibatidine and (-)-TQS
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.34 Å
Deposited: 2023-12-04
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8v81: Phosphorylated, ATP-bound, inhibitor 172-bound E1371Q human cystic fibrosis transmembrane conductance regulator
Classification: MEMBRANE PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-04
Authors: Gao, X., Hwang, T.
PDB entry 8v82: Alpha7-nicotinic acetylcholine receptor bound to epibatidine and PNU-120596
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2023-12-04
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8v83: 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-12-04
Authors: Cruz, V.E., Weirich, C.S., Peddada, N., Erzberger, J.P.
PDB entry 8v84: 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
Classification: Ribosome/RNA
Source organism: Saccharomyces cerevisiae BY4741; Saccharomyces cerevisiae BY4741-AV16
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-12-04
Authors: Cruz, V.E., Weirich, C.S., Peddada, N., Erzberger, J.P.
PDB entry 8v85: 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Low-pass filtered locally refined map)
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-12-04
Authors: Cruz, V.E., Weirich, C.S., Peddada, N., Erzberger, J.P.
PDB entry 8v86: Alpha7-nicotinic acetylcholine receptor bound to GAT107
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2023-12-04
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8v87: 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
Classification: Ribosome/RNA
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-12-04
Authors: Cruz, V.E., Weirich, C.S., Peddada, N., Erzberger, J.P.
PDB entry 8v88: Alpha7-nicotinic acetylcholine receptor bound to epibatidine and GAT107
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-12-05
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8v89: Alpha7-nicotinic acetylcholine receptor time resolved resting state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-12-05
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8v8a: Alpha7-nicotinic acetylcholine receptor time resolved bound to epibatidine and PNU-120596 desensitized intermediate state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2023-12-05
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8v8b: Structure of 80alpha portal protein expressed in E. coli
Classification: STRUCTURAL PROTEIN
Source organism: Staphylococcus phage 80alpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-12-05
Authors: Kizziah, J.L., Mukherjee, A., Dokland, T.
PDB entry 8v8c: Alpha7-nicotinic acetylcholine receptor time resolved bound to epibatidine and PNU-120596 asymmetric state 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-12-05
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8v8d: Alpha7-nicotinic acetylcholine receptor time resolved bound to epibatidine and PNU-120596 asymmetric state 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-12-05
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8v8e: Room-temperature X-ray structure of SARS-CoV-2 main protease catalytic domain (residues 1-199-6H) in complex with ensitrelvir (ESV)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-05
Authors: Kovalevsky, A., Coates, L.
PDB entry 8v8f: The co-crystal structure of anti-HIV scFv and Utag
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-12-05
Authors: Chen, S.H., Snow, C.D.
PDB entry 8v8g: Room-temperature X-ray structure of SARS-CoV-2 main protease catalytic domain (residues 1-196) in complex with ensitrelvir (ESV)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-05
Authors: Kovalevsky, A., Coates, L.
PDB entry 8v8h: PI3Ka H1047R co-crystal structure with inhibitor in cryptic pocket near H1047R (compound 4).
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.58 Å
Deposited: 2023-12-05
Authors: Gunn, R.J., Lawson, J.D.
PDB entry 8v8i: PI3Ka H1047R co-crystal structure with inhibitor in cryptic pocket (compound 5).
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-12-05
Authors: Gunn, R.J., Lawson, J.D.
PDB entry 8v8j: PI3Ka H1047R co-crystal structure with inhibitors in two cryptic pockets (compounds 4 and 5).
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-12-05
Authors: Gunn, R.J., Lawson, J.D.
PDB entry 8v8k: Crystal Structure of Nanobody NbE
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-12-05
Authors: Koehl, A., Manglik, A., Yu, J., Kumar, A., Zhang, X., Martin, C., Raia, P., Steyaert, J., Ballet, S., Boland, A., Stoeber, M.
PDB entry 8v8l: Switchgrass Chalcone Isomerase
Classification: ISOMERASE
Source organism: Panicum virgatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-12-05
Authors: Lewis, J.A., Kang, C.
PDB entry 8v8m: Switchgrass Chalcone Synthase
Classification: TRANSFERASE
Source organism: Panicum virgatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-12-05
Authors: Lewis, J.A., Kang, C.
PDB entry 8v8n: Switchgrass Chalcone Synthase C170S
Classification: TRANSFERASE
Source organism: Panicum virgatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-12-05
Authors: Lewis, J.A., Kang, C.
PDB entry 8v8o: Switchgrass Chalcone Isomerase-Like Protein
Classification: PROTEIN BINDING
Source organism: Panicum virgatum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2023-12-05
Authors: Lewis, J.A., Kang, C.
PDB entry 8v8p: Sorghum Chalcone Isomerase
Classification: ISOMERASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2023-12-05
Authors: Lewis, J.A., Kang, C.
PDB entry 8v8q: HUMAN LEUKOCYTE ANTIGEN B*07:02 IN COMPLEX WITH MERS-COV EPITOPE N95-103 (A95S mutant)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-12-05
Authors: Oltean, N., Nyovanie, S., Hashem, A., Patskovska, L., Patskovsky, Y., Krogsgaard, M.
PDB entry 8v8r: Crystal Structure of Reactive Enamine Deaminase A (RidA) Homolog from an Opportunistic Pathogen, Streptococcus sanguinis.
Classification: HYDROLASE
Source organism: Streptococcus sanguinis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-05
Authors: Thomas, L.M., Rajan, R., Somalinga, V., Benedict, A., Aquino, A.
PDB entry 8v8s: Structure of human AQP4 in lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-12-06
Authors: Gupta, M., Khandelwal, N.K., Stroud, R.M.
PDB entry 8v8t: Asymmetrical subunit from a Drp1 lattice on PA nanotubes
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 14.73 Å
Deposited: 2023-12-06
Authors: Rochon, K., Peng, R., Hutson, A.N., Stagg, S.M., Mears, J.A.
PDB entry 8v8u: PI3Ka H1047R co-crystal structure with inhibitor in cryptic pocket near H1047R (compound 12).
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2023-12-06
Authors: Gunn, R.J., Lawson, J.D.
PDB entry 8v8v: PI3Ka H1047R co-crystal structure with inhibitor in cryptic pocket near H1047R (compound 7).
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-12-06
Authors: Gunn, R.J., Lawson, J.D.
PDB entry 8v8w: Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (Tetragonal P form)
Classification: LIGASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-12-06
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8v8x: Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (Orthorhombic P form2)
Classification: LIGASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-06
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8v8y: Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (Orthorhombic P form)
Classification: LIGASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-12-06
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8v8z: Lipoprotein(a) Kringle IV domain 8 - Lp(a) KIV8 in complex with LY3473329
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-12-06
Authors: Hendle, J., Weichert, K., Sauder, J.M.
PDB entry 8v90: TtgR variant 3A7 with naltrexone
Classification: TRANSCRIPTION
Source organism: Pseudomonas putida DOT-T1E
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-12-06
Authors: Acheson, J.F., Lee, D., Ramen, S.
PDB entry 8v91: Structure of human AQP4 with a pathogenic autoantibody- rAB 58
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-12-07
Authors: Gupta, M., Khandelwal, N.K., Stroud, R.M.
PDB entry 8v92: BRD4 BD1 liganded with macrocyclic compound 2b (JJ-II-352A)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-12-07
Authors: Schonbrunn, E., Chan, A.
PDB entry 8v93: Cryo-EM structure of E. coli FimH lectin domain bound to Fabs 329-2 and 454-3
Classification: CELL ADHESION/IMMUNE SYSTEM
Source organism: Escherichia coli; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-12-07
Authors: Lees, J.A., Han, S.
PDB entry 8v94: De novo designed homo-oligomeric TM domain aITL_04927
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-12-07
Authors: Mravic, M., Anderson, C.T.
PDB entry 8v95: GII.8 Amsterdam norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Human calicivirus strain Hu/NLV/Amsterdam/98-18/1998/NET
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-12-07
Authors: Kher, G., Prewitt, A., Pancera, M., Hansman, G.
PDB entry 8v96: GII.14 M7 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Human calicivirus NLV/M7/1999/US
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2023-12-07
Authors: Kher, G., Prewitt, A., Pancera, M., Hansman, G.
PDB entry 8v97: GII.17 CS-E1 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-12-07
Authors: Kher, G., Prewitt, A., Pancera, M., Hansman, G.
PDB entry 8v98: GII.24 Loreto 1972 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-12-07
Authors: Kher, G., Prewitt, A., Pancera, M., Hansman, G.
PDB entry 8v99: GII.26 Leon 4509 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-12-07
Authors: Kher, G., Reese, T., Pancera, M., Hansman, G.
PDB entry 8v9a: GII.NA1 Loreto 1257 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2023-12-07
Authors: Kher, G., Kim, I., Pancera, M., Hansman, G.
PDB entry 8v9b: Lipoprotein(a) Kringle IV domain 7 - Lp(a) KIV7 in complex with LY3441732
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2023-12-07
Authors: Hendle, J., Weichert, K., Sauder, J.M.
PDB entry 8v9c: HIV-1 Integrase F185H Complexed with Allosteric Inhibitor GSK1264
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 4.4 Å
Deposited: 2023-12-07
Authors: Montermoso, S., Gupta, K., Eilers, G., Bushman, F.D., Van Duyne, G.D.
PDB entry 8v9d: Structure of human AQP4 with a pathogenic autoantibody - rAB 186
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-12-07
Authors: Gupta, M., Khandelwal, N.K., Stroud, R.M.
PDB entry 8v9f: BRD4 BD1 liganded with macrocyclic compound 2d (JJ-II-363A)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2023-12-08
Authors: Schonbrunn, E., Chan, A.
PDB entry 8v9g: GES-5-meropenem complex
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-12-08
Authors: Smith, C.A., Stewart, N.K., Vakulenko, S.B.
PDB entry 8v9h: GES-5-NA-1-157 complex
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-12-08
Authors: Smith, C.A., Stewart, N.K., Vakulenko, S.B.
PDB entry 8v9i: 1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Deinococcus radiodurans with D-phenylalanine-derived triazole acetylphosphonate (D-PheTrAP) bound
Classification: TRANSFERASE/INHIBITOR
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.981 Å
Deposited: 2023-12-08
Authors: Chen, P.Y.-T., Drennan, C.L.
PDB entry 8v9j: Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-08
Authors: Rybak, M.Y., Helena-Bueno, K., Hill, C.H., Melnikov, S.V., Gagnon, M.G.
PDB entry 8v9k: Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
Classification: RIBOSOME
Source organism: Mycobacterium tuberculosis H37Rv; Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-08
Authors: Rybak, M.Y., Helena-Bueno, K., Hill, C.H., Melnikov, S.V., Gagnon, M.G.
PDB entry 8v9l: Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-08
Authors: Rybak, M.Y., Helena-Bueno, K., Hill, C.H., Melnikov, S.V., Gagnon, M.G.
PDB entry 8v9m: Human Ornithine Aminotransferase cocrystallized with its inhibitor, (R)-3-amino-5,5-difluorocyclohex-1-ene-1-carboxylic acid.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-12-08
Authors: Vargas, A.L., Devitt, A., Kaley, N., Silverman, R., Liu, D.
PDB entry 8v9n: Human PU.1 ETS-Domain (165-270) Bound to d(AATAGAAGGAAGTGGG)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-12-08
Authors: Terrell, J.R., Ogbonna, E.N., Poon, G.M.K., Wilson, W.D.
PDB entry 8v9o: Imaging scaffold engineered to bind the therapeutic protein target BARD1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.81 Å
Deposited: 2023-12-08
Authors: Agdanowski, M.P., Castells-Graells, R., Sawaya, M.R., Yeates, T.O., Arbing, M.A.
PDB entry 8v9p: Proteus vulgaris tryptophan indole-lyase complexed with (3S)-dioxindolyl-L-alanine
Classification: LYASE
Source organism: Proteus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-12-08
Authors: Phillips, R.S.
PDB entry 8v9q: Crystal structure of mGalNAc-T1 in complex with the mucin glycopeptide Muc5AC-13, Mn2+, and UDP.
Classification: TRANSFERASE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-12-08
Authors: Samara, N.L., Collette, A.M.
PDB entry 8v9r: Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Poised to Unfold a Branched-Degron DHFR-ssrA Substrate Bound with MTX
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-09
Authors: Ghanbarpour, A., Sauer, R.T., Davis, J.H.
PDB entry 8v9s: Distinct Quaternary States, Intermediates, and Autoinhibition During Loading of the DnaB-Replicative Helicase by the Phage Lambda P Helicase Loader
Classification: REPLICATION
Source organism: Escherichia phage Lambda
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-12-09
Authors: Brown, D., Shatarupa, A., Olinares, P.D.B., Chase, J., Isiorho, E., Chait, B., Jeruzalmi, D.
PDB entry 8v9t: Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:5 stoichiometry ratio
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-12-09
Authors: Shatarupa, A., Brown, D., Olinares, P.D.B., Chase, J., Isiorho, E., Chait, B.T., Jeruzalmi, D.
PDB entry 8v9u: Solution NMR structure of human DNMT1 N-terminal alpha-helical domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-12-09
Authors: Hu, Q., Botuyan, M.V., Mer, G.
PDB entry 8v9v: Yeh-like adhesin YhlD receptor binding domain
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-12-10
Authors: Lopatto, E.D.B., Tamadonfar, K.O., Klein, R.D., Hultgren, S.J.
PDB entry 8v9w: X-ray crystal structure of JGFN4 complexed with fentanyl
Classification: ANTITOXIN
Source organism: Camelidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-12-10
Authors: Moller, N., Shi, K., Aihara, H.
PDB entry 8v9x: X-ray crystal structure of JGFN4 complex with fentanyl
Classification: ANTITOXIN
Source organism: Camelidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-12-10
Authors: Moller, N., Shi, K., Aihara, H.
PDB entry 8v9y: X-ray crystal structure of nanobody JGFN4
Classification: ANTITOXIN
Source organism: Camelidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-12-10
Authors: Shi, K., Moller, N., Aihara, H.
PDB entry 8v9z: X-ray crystal structure of JGFN4 N76D complexed with fentanyl in monomer form
Classification: ANTITOXIN
Source organism: Camelidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-12-10
Authors: Shi, K., Moller, N., Aihara, H.
PDB entry 8va0: X-ray crystal structure of JGFN4 N76D complexed with fentanyl in dimer form
Classification: ANTITOXIN
Source organism: Camelidae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-12-10
Authors: Shi, K., Moller, N., Aihara, H.
PDB entry 8va1: S. aureus TarL H300N in complex with CDP-ribitol (single tetramer)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-10
Authors: Li, F.K.K., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8va2: Symmetry expanded map of 2 gamma-tubulins bound to 2 alpha tubulins in gamma tubulin ring complex capped microtubule end.
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-12-10
Authors: Aher, A., Urnavicius, L., Kapoor, T.M.
PDB entry 8va3: Crystal structure of CapGH3b enzyme retrieved from capybara gut metagenome
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-12-11
Authors: Martins, M.P., Morais, M.A.B., Chinaglia, M., Mandelli, F., Lima, E.A., Murakami, M.T.
PDB entry 8va4: Crystal structure of CapGH16_3 enzyme retrieved from capybara gut metagenome
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-12-11
Authors: Vieira, P.S., Martins, M.P., Morais, M.A.B., Mandelli, F., Chinaglia, M., Lima, E.A., Murakami, M.T.
PDB entry 8va5: Menin mutant - T349M in complex with Ziftomenib (KO-539)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-12-11
Authors: Clegg, B.D., Cierpicki, T., Grembecka, J.
PDB entry 8va6: Menin in complex with Ziftomenib (KO-539)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-12-11
Authors: Clegg, B.D., Linhares, B.M., Cierpicki, T., Grembecka, J.
PDB entry 8va7: Crystal structure of CapGH3a enzyme retrieved from capybara gut metagenome
Classification: HYDROLASE
Source organism: gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-12-11
Authors: Martins, M.P., Vieira, P.S., Morais, M.A.B., Mandelli, F., Chinaglia, M., Lima, E.A., Murakami, M.T.
PDB entry 8va9: Crystal structure of FeII/MnII CtCADD from Chlamydia trachomatis
Classification: OXIDOREDUCTASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-12-11
Authors: Phan, H.N., Swartz, P.D., Makris, T.M.
PDB entry 8vaa: Actin-binding domain of Legionella pneumophila effector LFAT1 (lpg1387) bound to F-actin
Classification: TOXIN
Source organism: Bos taurus; Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-12-11
Authors: Zeng, W., Mao, Y.
PDB entry 8vab: Crystal structure of FeII/FeII CtCADD from Chlamydia trachomatis
Classification: OXIDOREDUCTASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-12-11
Authors: Phan, H.N., Swartz, P.D., Makris, T.M.
PDB entry 8vac: Cryogenic electron microscopy structure of human serum albumin in complex with teniposide
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-11
Authors: Catalano, C., Lucier, K.W., To, D., Senko, S., Tran, N.L., Farwell, A.C., Silva, S.M., Dip, P.V., Poweleit, N., Scapin, G.
PDB entry 8vad: Crystal structure of MCoHNE-I, a potent in-vivo neutrophil elastase inhibitor
Classification: BIOSYNTHETIC PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-12-11
Authors: Xu, J., Rajasekaran, G., Li, S., Chen, L., Camarero, J.A.
PDB entry 8vae: Cryogenic electron microscopy structure of human serum albumin in complex with salicylic acid
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-11
Authors: Catalano, C., Lucier, K.W., To, D., Senko, S., Tran, N.L., Farwell, A.C., Silva, S.M., Dip, P.V., Poweleit, N., Scapin, G.
PDB entry 8vaf: Cryogenic electron microscopy structure of apo human serum albumin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-12-11
Authors: Catalano, C., Lucier, K.W., To, D., Senko, S., Tran, N.L., Farwell, A.C., Silva, S.M., Dip, P.V., Poweleit, N., Scapin, G.
PDB entry 8vag: Crystal structure of MnII/MnII CtCADD from Chlamydia trachomatis
Classification: OXIDOREDUCTASE
Source organism: Chlamydia trachomatis D/UW-3/CX
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-12-11
Authors: Phan, H.N., Swartz, P.D., Makris, T.M.
PDB entry 8vah: E.coli PNPase in complex with single 8-oxoG RNA
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-12-11
Authors: Kim, W., Zhang, Y.J.
PDB entry 8vai: Crystal structure of apo CtCADD from Chlamydia trachomatis
Classification: OXIDOREDUCTASE
Source organism: Chlamydia trachomatis D/UW-3/CX
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-12-11
Authors: Phan, H.N., Swartz, P.D., Makris, T.M.
PDB entry 8vaj: Human Argonaute3 bound to cityRNA and target RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2023-12-11
Authors: Zhang, H., Sim, G., Adhav, V.A., Nakanishi, K.
PDB entry 8vak: E.coli PNPase in complex with double 8-oxoG RNA
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-11
Authors: Kim, W., Zhang, Y.J.
PDB entry 8val: Structure of the E. coli clamp loader bound to the beta clamp in a Open-DNAp/t conformation
Classification: REPLICATION, TRANSFERASE/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-11
Authors: Landeck, J.T., Kelch, B.A.
PDB entry 8vam: Structure of the E. coli clamp loader bound to the beta clamp in a Semi-Open conformation
Classification: REPLICATION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-11
Authors: Landeck, J.T., Kelch, B.A.
PDB entry 8van: Structure of the E. coli clamp loader bound to the beta clamp in an Initial-Binding conformation
Classification: REPLiCATION, TRANSFERASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.7 Å
Deposited: 2023-12-11
Authors: Landeck, J.T., Pajak, J., Kelch, B.A.
PDB entry 8vao: Simulation-driven design of prefusion stabilized SARS-CoV-2 spike S2 antigen
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-11
Authors: Zhou, L., McLellan, J.S.
PDB entry 8vap: Structure of the E. coli clamp loader bound to the beta clamp in a Fully-Open conformation
Classification: REPLICATION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-11
Authors: Landeck, J.T., Kelch, B.A.
PDB entry 8vaq: Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA1 conformation
Classification: REPLICATION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-12-11
Authors: Landeck, J.T., Kelch, B.A.
PDB entry 8var: Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA2 conformation
Classification: REPLICATION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-12-11
Authors: Landeck, J.T., Kelch, B.A.
PDB entry 8vas: Structure of the E. coli clamp loader bound to the beta clamp in an Altered-Collar conformation
Classification: REPLICATION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-12-11
Authors: Landeck, J.T., Kelch, B.A.
PDB entry 8vat: Structure of the E. coli clamp loader bound to the beta clamp in a Open-RNAp/t conformation
Classification: REPLICATION, TRANSFERASE/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-11
Authors: Landeck, J.T., Kelch, B.A.
PDB entry 8vau: Nicotinamide Riboside and CD38: Covalent Inhibition and Live-Cell Labeling
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-11
Authors: Kao, G., Zhang, X.N., Nasertorabi, F., Katz, B.B., Li, Z., Dai, Z., Zhang, Z., Zhang, L., Louie, S.G., Cherezov, V., Zhang, Y.
PDB entry 8vav: Human Slo1 - human LRRC26 in presence of EDTA - GR masked
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-12-11
Authors: Pal, K., Kallure, G.S., Chowdhury, S.
PDB entry 8vaw: Magnesium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-12-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 8vax: Cadmium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.417 Å
Deposited: 2023-12-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 8vaz: Structure of human Slo1 and human LRRC26 in EDTA - LRRD masked
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2023-12-11
Authors: Pal, K., Kallure, G.S., Chowdhury, S.
PDB entry 8vb0: Asymmetric unit of bacteriophage PhiM1 mature capsid
Classification: VIRUS
Source organism: Pectobacterium phage PhiM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-12-11
Authors: Eruera, A., Hodgkinson-Bean, J.
PDB entry 8vb1: Crystal structure of HIV-1 protease with GS-9770
Classification: VIRAL PROTEIN
Source organism: HIV-1 06TG.HT043
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-12-11
Authors: Lansdon, E.B.
PDB entry 8vb2: C4 pre-infection ejectosome of the mature bacteriophage PhiM1 particle
Classification: VIRAL PROTEIN
Source organism: Pectobacterium phage PhiM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-12-11
Authors: Hodgkinson-Bean, J., Eruera, A.
PDB entry 8vb3: Dienelactone hydrolase from Solimonas fluminis
Classification: HYDROLASE
Source organism: Solimonas fluminis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-12-11
Authors: Schnettler Fernandez, J.D.F., Campbell, E.C., Hollfelder, F.
PDB entry 8vb4: C12 portal and adaptor complex of the mature bacteriophage PhiM1 particle
Classification: VIRAL PROTEIN
Source organism: Pectobacterium phage PhiM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-12-12
Authors: Hodgkinson-Bean, J., Eruera, A.
PDB entry 8vb5: Crystal structure of kinase domain of HER2 Exon 20 insertion mutant in complex with tucatinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-12-12
Authors: Rana, N., Campbell, J., Dou, Y.
PDB entry 8vb6: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vb7: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vb8: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vb9: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vba: The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1C08
Classification: CELL ADHESION
Source organism: Escherichia coli ETEC H10407; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-12-12
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 8vbb: The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1G05
Classification: CELL ADHESION
Source organism: Escherichia coli ETEC H10407; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2023-12-12
Authors: Berndsen, Z.T., Ward, A.B.
PDB entry 8vbc: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vbd: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vbe: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vbf: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vbg: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vbh: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vbi: Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-12-12
Authors: Vergara, S., Zhou, X., Santiago, U., Conway, J.F., Sluis-Cremer, N., Calero, G.
PDB entry 8vbj: Structure of bovine anti-HIV Fab ElsE2
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbk: Structure of bovine anti-HIV Fab ElsE5
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbl: Structure of bovine anti-HIV Fab ElsE6
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbm: Structure of bovine anti-HIV Fab ElsE7
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbn: Structure of bovine anti-HIV Fab ElsE8
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbo: Structure of bovine anti-HIV Fab ElsE9
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbp: Structure of bovine anti-HIV Fab Bess4
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbq: Structure of bovine anti-HIV Fab Bess7
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbr: Structure of bovine anti-HIV Fab ElsE11
Classification: IMMUNE SYSTEM
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-12-12
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8vbs: E. coli cysteine desulfurase SufS bound to SufE C51A
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2023-12-12
Authors: Dunkle, J.A., Frantom, P.A., Gilbert, N.C.
PDB entry 8vbt: Structure of the monofunctional Staphylococcus aureus PBP1 in its apo form
Classification: HYDROLASE
Source organism: Staphylococcaceae bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-12
Authors: Bon, C.G., Lee, J., Caveney, N.A., Strynadka, N.C.J.
PDB entry 8vbu: Structure of the monofunctional Staphylococcus aureus PBP1 in its beta-lactam (Oxacillin) inhibited form
Classification: HYDROLASE/INHIBITOR,ANTIBIOTIC
Source organism: Staphylococcaceae bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-12
Authors: Bon, C.G., Lee, J., Caveney, N.A., Strynadka, N.C.J.
PDB entry 8vbv: Structure of the monofunctional Staphylococcus aureus PBP1 in its beta-lactam (Cephalexin) inhibited form
Classification: HYDROLASE/INHIBITOR,ANTIBIOTIC
Source organism: Staphylococcaceae bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-12
Authors: Bon, C.G., Lee, J., Caveney, N.A., Strynadka, N.C.J.
PDB entry 8vbw: Structure of the monofunctional Staphylococcus aureus PBP1 in its beta-lactam (Ertapenem) inhibited form
Classification: HYDROLASE/INHIBITOR,ANTIBIOTIC
Source organism: Staphylococcaceae bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-12
Authors: Bon, C.G., Lee, J., Caveney, N.A., Strynadka, N.C.J.
PDB entry 8vbx: C6 nozzle and fibre complex of the mature bacteriophage PhiM1 particle
Classification: VIRAL PROTEIN
Source organism: Pectobacterium phage PhiM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-12-12
Authors: Hodgkinson-Bean, J., Eruera, A.
PDB entry 8vby: Structure of the human dopamine transporter in complex with beta-CFT, MRS7292 and divalent zinc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-12-12
Authors: Srivastava, D.K., Gouaux, E.
PDB entry 8vbz: Crystal structure of the transpeptidase domain of a S310A mutant of PBP2 from Neisseria gonorrhoeae strain H041
Classification: HYDROLASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-13
Authors: Stratton, C., Bala, S., Davies, C.
PDB entry 8vc0: HIV-1 CA crosslinked pentamer in complex with GS-CA1
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2023-12-13
Authors: Piacentini, J., Ganser-Pornillos, B.K., Pornillos, O.
PDB entry 8vc1: CryoEM structure of insect gustatory receptor BmGr9
Classification: MEMBRANE PROTEIN
Source organism: Bombyx mori
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-12-13
Authors: Frank, H.M., Walsh Jr., R.M., Garrity, P.A., Gaudet, R.
PDB entry 8vc2: CryoEM structure of insect gustatory receptor BmGr9 in the presence of fructose
Classification: MEMBRANE PROTEIN
Source organism: Bombyx mori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2023-12-13
Authors: Frank, H.M., Walsh Jr., R.M., Garrity, P.A., Gaudet, R.
PDB entry 8vc3: Voltage gated potassium ion channel Kv1.2 in complex with DTx
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-13
Authors: Wu, Y., Sigworth, F.J.
PDB entry 8vc4: Voltage gated potassium ion channel Kv1.2 in Sodium
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-12-13
Authors: Wu, Y., Sigworth, F.J.