LiteFold/PDB huggingface dataset:
PDB entry 8ppk: Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
Classification: TRANSLATION
Source organism: Bat Hp-betacoronavirus/Zhejiang2013; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-07-07
Authors: Schubert, K., Karousis, E.D., Ban, I., Lapointe, C.P., Leibundgut, M., Baeumlin, E., Kummerant, E., Scaiola, A., Schoenhut, T., Ziegelmueller, J., Puglisi, J.D., Muehlemann, O., Ban, N.
PDB entry 8ppl: MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
Classification: TRANSLATION
Source organism: Homo sapiens; Middle East respiratory syndrome-related coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-07-07
Authors: Schubert, K., Karousis, E.D., Ban, I., Lapointe, C.P., Leibundgut, M., Baeumlin, E., Kummerant, E., Scaiola, A., Schoenhut, T., Ziegelmueller, J., Puglisi, J.D., Muehlemann, O., Ban, N.
PDB entry 8ppm: IL-12Rb1 neutralizing Fab4, crystal kappa variant
Classification: IMMUNOSUPPRESSANT
Source organism: Homo sapiens x Mus musculus hybrid cell line
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-07-07
Authors: Bloch, Y., Savvides, S.N.
PDB entry 8ppn: Galectin-3 carbohydrate recognition domain in complex with thiodigalactoside at 1.8 resolution
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-07
Authors: Tsagkarakou, A.S., Leonidas, D.D.
PDB entry 8ppo: First Intermediate Amyloid (FIA) - Tau
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2023-07-07
Authors: Lovestam, S., Scheres, S.H.W., Goedert, M., Li, D.
PDB entry 8ppp: Amide bond synthetase from Streptomyces hindustanus K492H mutant in complex with AMP-CPP
Classification: LIGASE
Source organism: Streptoalloteichus hindustanus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2023-07-07
Authors: Tang, Q., Grogan, G.
PDB entry 8ppq: Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Classification: VIRUS
Source organism: Tick-borne encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-07-07
Authors: Anastasina, M., Domanska, A., Pulkkinen, L.I.A., Butcher, S.J.
PDB entry 8ppr: Structure of the human outer kinetochore KMN network complex
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-08
Authors: Yatskevich, S., Barford, D.
PDB entry 8pps: Dimeric RbdA EAL, in apo state
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-08
Authors: Cordery, C.R., Maly, M., Walsh, M.A., Tews, I.
PDB entry 8ppt: Pyrococcus abyssi DNA polymerase D (PolD) in its editing mode bound to a primer/template substrate containing a mismatch
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi GE5; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-10
Authors: Betancurt-Anzola, L., Martinez-Carranza, M., Zatopek, K.M., Gardner, A.F., Sauguet, L.
PDB entry 8ppu: Pyrococcus abyssi DNA polymerase D (PolD) in its editing mode bound to a primer/template substrate containing three consecutive mismatches
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi GE5; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-07-10
Authors: Betancurt-Anzola, L., Martinez-Carranza, M., Zatopek, K.M., Gardner, A.F., Sauguet, L.
PDB entry 8ppv: Intermediate conformer of Pyrococcus abyssi DNA polymerase D (PolD) bound to a primer/template substrate containing three consecutive mismatches
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi GE5; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-07-10
Authors: Betancurt-Anzola, L., Martinez-Carranza, M., Zatopek, K.M., Gardner, A.F., Sauguet, L.
PDB entry 8ppw: Structure of human PARK7 in complex with GK16S
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-07-10
Authors: Grethe, C., Gersch, M.
PDB entry 8ppx: Influenza A/California/07/2009(H1N1) endonuclease in complex with flavonoid-like compound
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/California/07/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-07-10
Authors: Radilova, K., Brynda, J.
PDB entry 8ppz: Co-crystal structure of FKBP12, compound 7 and the FRB fragment of mTOR
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-07-10
Authors: Meyners, C., Deutscher, R.C.E., Hausch, F.
PDB entry 8pq0: Structure of human PARK7 in complex with GK16R
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-07-10
Authors: Grethe, C., Gersch, M.
PDB entry 8pq2: XBB 1.0 RBD bound to P4J15 (Local)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2023-07-10
Authors: Duhoo, Y., Lau, K.
PDB entry 8pq4: Structure of HosA transcriptional regulator from enteropathogenic Escherichia coli O127:H6 (strain E2348/69)
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O127:H6 str. E2348/69
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-07-10
Authors: Arpita, G., Kavyashree, M., Kannika, B.R., Madan Kumar, S.
PDB entry 8pq5: Human Cohesin ATPase module with an open DNA exit gate
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-07-10
Authors: Landwerlin, P., Durand, A., Diebold-Durand, M.-L., Romier, C.
PDB entry 8pq7: The Potato Late Blight pathogen (Phytophthora infestans) effector protein Pi04134 in complex with potato protein phosphatase type 1c (PP1c).
Classification: PLANT PROTEIN
Source organism: Phytophthora infestans; Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-10
Authors: Bentham, A.R., Banfield, M.J.
PDB entry 8pq8: Sak Single Strand Annealing Protein from Staphylococcal Bacteriophage 80a - dCTD
Classification: RECOMBINATION
Source organism: Staphylococcus phage 80alpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-07-10
Authors: Debiasi-Anders, G., Mir-Sanchis, I.
PDB entry 8pq9: c-KIT kinase domain in complex with avapritinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-11
Authors: Teuber, A., Kleinboelting, S., Mueller, M.P., Rauh, D.
PDB entry 8pqa: c-KIT kinase domain in complex with avapritinib derivative 4
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-07-11
Authors: Teuber, A., Mueller, M.P., Rauh, D.
PDB entry 8pqb: c-KIT kinase domain in complex with avapritinib derivative 8
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-07-11
Authors: Teuber, A., Niggenaber, J., Mueller, M.P., Rauh, D.
PDB entry 8pqc: c-KIT kinase domain in complex with avapritinib derivative 9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-07-11
Authors: Teuber, A., Kleinboelting, S.B., Mueller, M.P., Rauh, D.
PDB entry 8pqd: c-KIT kinase domain in complex with avapritinib derivative 10
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-11
Authors: Teuber, A., Mueller, M.P., Rauh, D.
PDB entry 8pqe: c-KIT kinase domain in complex with avapritinib derivative 11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-11
Authors: Teuber, A., Niggenaber, J., Mueller, M.P., Rauh, D.
PDB entry 8pqf: c-KIT kinase domain in complex with avapritinib derivative 12
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-11
Authors: Teuber, A., Mueller, M.P., Rauh, D.
PDB entry 8pqg: c-KIT T670I mutated kinase domain in complex with avapritinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-07-11
Authors: Teuber, A., Mueller, M.P., Rauh, D.
PDB entry 8pqh: PDGFRA T674I mutant kinase domain in complex with avapritinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-07-11
Authors: Teuber, A., Kleinboelting, S., Mueller, M.P., Rauh, D.
PDB entry 8pqi: PDGFRA T674I mutant kinase domain in complex with avapritinib derivative 9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-11
Authors: Teuber, A., Kleinboelting, S., Mueller, M.P., Rauh, D.
PDB entry 8pqj: PDGFRA wild-type kinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-07-11
Authors: Teuber, A., Mueller, M.P., Rauh, D.
PDB entry 8pqk: APO crystal structure of PDGFRA-T674I kinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-11
Authors: Teuber, A., Mueller, M.P., Rauh, D.
PDB entry 8pql: K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2-donor UB-acceptor UB-SIL1 peptide
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2023-07-11
Authors: Liwocha, J., Prabu, J.R., Kleiger, G., Schulman, B.A.
PDB entry 8pqm: The DNA-binding domain of L-lactate utilization repressor (LutR-DBD) from Bacillus subtilis
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-07-11
Authors: Soltysova, M.
PDB entry 8pqn: NQO1 bound to RBS-10
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2023-07-11
Authors: Pous, J., Jose-Duran, F., Mayor-Ruiz, C., Riera, A.
PDB entry 8pqo: PITP in complex with the inhibitor VT01545
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-11
Authors: Boura, E., Eisenreichova, A.
PDB entry 8pqp: Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 D62N Mutant bound to ImmH-Forodesine
Classification: PROTEIN BINDING
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: X-RAY DIFFRACTION
Resolution: 1.709 Å
Deposited: 2023-07-11
Authors: Tang, P., Harding, C.J., Czekster, M.C.
PDB entry 8pqq: Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88Q Mutant bound to Clofarabine
Classification: PROTEIN BINDING
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-07-11
Authors: Tang, P., Harding, C.J., Czekster, M.C.
PDB entry 8pqr: Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to DAD_Immucillin-H
Classification: PROTEIN BINDING
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: X-RAY DIFFRACTION
Resolution: 1.586 Å
Deposited: 2023-07-11
Authors: Tang, P., Harding, C.J., Czekster, C.M.
PDB entry 8pqs: Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88A Mutant
Classification: TRANSFERASE
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-11
Authors: Tang, P., Harding, C.J., Czekster, C.M.
PDB entry 8pqt: Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Bis-Tris
Classification: TRANSFERASE
Source organism: Chroococcidiopsis thermalis PCC 7203
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-11
Authors: Tang, P., Harding, C.J., Czekster, C.M.
PDB entry 8pqu: NMR structure of the Thermus thermophilus PilF-GSPIIB domain in the apo state
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB27
Experimental method: SOLUTION NMR
Deposited: 2023-07-12
Authors: Neissner, K., Woehnert, J.
PDB entry 8pqv: Cytoplasmic dynein-1 motor domain in post-powerstroke state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pqw: Cytoplasmic dynein-1 motor domain bound to dynactin-p150glued and LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pqx: p97 (VCP) mutant - F539A state III
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-12
Authors: Arie, M., Matzov, D., Karmona, R., Szenkier, N., Stanhill, A., Navon, A.
PDB entry 8pqy: Cytoplasmic dynein-1 motor domain bound to LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pqz: Cytoplasmic dynein-1 A1/A2 motor domains bound to LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pr0: Cytoplasmic dynein-A heavy chain bound to dynactin-p150glued and IC-LC tower
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pr1: Cytoplasmic dynein-B heavy chain bound to IC-LC tower
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.2 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pr2: Cytoplasmic dynein-1 heavy chain bound to JIP3-LZI
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pr3: Cytoplasmic dynein-1 heavy chain bound to JIP3-RH1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pr4: Dynactin pointed end bound to JIP3
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pr5: Structure of the autoinhibited dynactin p150glued projection
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.6 Å
Deposited: 2023-07-12
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8pr6: Crystal structure of Corynebacterium glutamicum mycoredoxin-3 at 1.7 A resolution.
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-12
Authors: Baranova, E.V., Wahni, K., Ezerina, D., Messens, J.
PDB entry 8pr7: Aurora-A in complex with CEP192 and an inhibitory monobody
Classification: TRANSFERASE
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2023-07-12
Authors: Miles, J.A., Bayliss, R.
PDB entry 8pr9: The structure of v13Bagel2
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8pra: The structure of v13Bagel4
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prb: The structure of v13Bagel6
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prc: The structure of v13Bagel8
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prd: The structure of nvBagel2
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8pre: The structure of nvBagel2 in the presence of Zn(II)
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prf: The structure of nvBagel5
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prg: The structure of nvBagel6
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prh: The structure of nvBagel7
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8pri: The structure of nvBagel9
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prj: The structure of v31Bagel8
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prk: THE R78K AND D117E ACTIVE SITE VARIANTS OF SACCHAROMYCES CEREVISIAE SOLUBLE INORGANIC PYROPHOSPHATASE: STRUCTURAL STUDIES AND MECHANISTIC IMPLICATIONS
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 1998-09-16
Authors: Tuominen, V., Heikinheimo, P., Kajander, T., Torkkel, T., Hyytia, T., Kapyla, J., Lahti, R., Cooperman, B.S., Goldman, A.
PDB entry 8prl: The structure of v22Bagel8
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prm: The structure of nvBagel2 binding the P8W48O184 polyoxometalate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prn: E1M, K50A, R52A, D97A, E99A MUTANT OF RH. BLASTICA PORIN
Classification: MEMBRANE PROTEIN
Source organism: Rhodobacter blasticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1998-06-12
Authors: Maveyraud, L., Schmid, B., Schulz, G.E.
PDB entry 8pro: The structure of nvBagel2 binding the P8W48O184 polyoxometalate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum H-6-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prp: The structure of nvBagel2 in the presence of Cd(II)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prq: The structure of nvBagel2 in the presence of Cu(II)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prr: The structure of nvBagel4 in the presence of Co(II)
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prs: The structure of nvBagel4
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8prt: The structure of nvBagel8 in the presence of Co(II)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Dictyoglomus thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-07-12
Authors: Vandebroek, L., Voet, A.R.D., Lee, X.Y.
PDB entry 8pru: Engineered form of T thermophiles AHIR
Classification: OXIDOREDUCTASE
Source organism: Thermus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-12
Authors: Roberts, M., Powell, A., Lewis, C., Sinclair, J.
PDB entry 8prv: Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosreductase domain (FASamn sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-12
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8prw: Cryo-EM structure of the yeast fatty acid synthase at 1.9 angstrom resolution
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2023-07-12
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8prx: Crystal structure of human cathepsin L after reaction with the bound ketoamide inhibitor 13b
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-12
Authors: Falke, S., Lieske, J., Guenther, S., Reinke, P.Y.A., Ewert, W., Loboda, J., Karnicar, K., Usenik, A., Lindic, N., Sekirnik, A., Chapman, H.N., Hinrichs, W., Turk, D., Meents, A.
PDB entry 8pry: Crystal structure of Trypanosoma cruzi glycerol kinase
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-07-12
Authors: Lipinski, O., Sonani, R.R., Dubin, G.
PDB entry 8ps0: Cryo-EM structure of Sodium proton exchanger NhaA with bound cardiolipin
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-07-13
Authors: Gulati, A., Meier, P., Kokane, S., Drew, D.
PDB entry 8ps1: Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASamn sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8ps2: Asymmetric unit of the yeast fatty acid synthase with ACP at the enoyl reductase domain (FASam sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8ps4: Escherichia coli SduA complex
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli KTE10
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-07-13
Authors: Loeff, L., Jinek, M.
PDB entry 8ps5: Escherichia coli SduA complex bound to DNA
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli KTE10; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-07-13
Authors: Loeff, L., Jinek, M.
PDB entry 8ps6: Crystal structure of the N-terminal domain of SduA
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli KTE10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2023-07-13
Authors: Loeff, L., Walter, A., Jinek, M.
PDB entry 8ps7: Crystal structure of Medicago truncatula LYR4 kinase domain
Classification: PLANT PROTEIN
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-13
Authors: Simonsen, B., Gysel, K., Laursen, M., Andersen, K.R.
PDB entry 8ps8: Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the enoyl reductase domain (FASam sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-07-26
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8ps9: Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASam sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psa: Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the ketosynthase domain (FASam sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psb: Three-layered parallel G-quadruplex with snapback loop from a G-rich sequence with five G-runs
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-07-13
Authors: Vianney, Y.M., Schroeder, N., Jana, J., Chojetzki, G., Weisz, K.
PDB entry 8psc: Three-layered basket-type G-quadruplex from a G-rich sequence with five G-runs
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-07-13
Authors: Vianney, Y.M., Schroeder, N., Jana, J., Weisz, K.
PDB entry 8psd: SARS-CoV-2 XBB 1.0 closed conformation.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-13
Authors: Duhoo, Y., Lau, K.
PDB entry 8pse: (3+1) hybrid G-quadruplex from a G-rich sequence with five G-runs
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-07-13
Authors: Jana, J., Vianney, Y.M., Schroder, N., Weisz, K.
PDB entry 8psf: Asymmetric unit of the yeast fatty acid synthase in non-rotated state with ACP at the acetyl transferase domain (FASx sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psg: Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the acetyl transferase domain (FASx sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psh: HIGH RESOLUTION NMR STRUCTURE OF THE STEREOREGULAR (ALL-RP)-PHOSPHOROTHIOATE-DNA/RNA HYBRID D (G*PS*C*PS*G*PS*T*PS*C*PS*A*PS*G*PS*G)R(CCUGACGC), MINIMIZED AVERAGE STRUCTURE
Classification: DNA-RNA HYBRID
Experimental method: SOLUTION NMR
Deposited: 1997-10-13
Authors: Bachelin, M., Hessler, G., Kurz, G., Hacia, J.G., Dervan, P.B., Kessler, H.
PDB entry 8psi: G-quadruplex with a 1-nt V-shaped loop from a G-rich sequence with five G-runs
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-07-13
Authors: Vianney, Y.M., Schroeder, N., Jana, J., Weisz, K.
PDB entry 8psj: Asymmetric unit of the yeast fatty acid synthase in the semi rotated state with ACP at the acetyl transferase domain (FASx sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psk: Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASx sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psl: Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the ketosynthase domain (FASx sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psm: Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the malonyl/palmitoyl transferase domain (FASx sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psn: Tilapia Lake Virus polymerase in vRNA initiation state (transcriptase conformation)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8pso: Tilapia Lake Virus polymerase in vRNA initiation state (core only)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8psp: Asymmetric unit of the yeast fatty acid synthase in rotated state with ACP at the acetyl transferase domain (FASx sample)
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-13
Authors: Singh, K., Bunzel, G., Graf, B., Yip, K.M., Stark, H., Chari, A.
PDB entry 8psq: Tilapia Lake Virus polymerase in cRNA pre-initiation state mode A (core only)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8psr: ERK2 covalently bound to SynthRevD-12-opt artificial peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Gogl, G., Remenyi, A.
PDB entry 8pss: Tilapia Lake Virus polymerase in cRNA pre-initiation state mode B (core-endo only)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8pst: ERK2 covelently bound to RU60 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A., Gogl, G.
PDB entry 8psu: Tilapia Lake Virus polymerase in vRNA pre-initiation state mode A (core only)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8psv: 2.7 A cryo-EM structure of in vitro assembled type 1 pilus rod
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-07-13
Authors: Hospenthal, M., Zyla, D., Glockshuber, R., Waksman, G.
PDB entry 8psw: ERK2 covalently bound to RU67 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A., Gogl, G.
PDB entry 8psx: Tilapia Lake Virus polymerase in vRNA elongation state (transcriptase conformation)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8psy: ERK2 covelently bound to RU68 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A., Gogl, G.
PDB entry 8psz: Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8pt0: ERK2 covelently bound to RU75 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A., Gogl, G.
PDB entry 8pt1: ERK2 covelently bound to RU76 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A., Gogl, G.
PDB entry 8pt2: Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (transcriptase conformation)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8pt3: ERK2 covelently bound to RU77 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A.
PDB entry 8pt4: beta-Ureidopropionase tetramer
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-07-13
Authors: Cederfelt, D., Dobritzsch, D.
PDB entry 8pt5: ERK2 covelently bound to RU187 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A.
PDB entry 8pt6: Tilapia Lake Virus polymerase in vRNA initiation state (replicase conformation)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8pt7: Tilapia Lake Virus polymerase in cRNA pre-initiation state mode A (core-endo only)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-07-13
Authors: Arragain, B., Cusack, S.
PDB entry 8pt8: JNK1 covalently bound to RU135 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A.
PDB entry 8pt9: JNK1 covalently bound to BD838 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A.
PDB entry 8pta: JNK1 covalently bound to BD837 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2023-07-13
Authors: Sok, P., Poti, A., Remenyi, A.
PDB entry 8ptc: COMPLEX CRYSTAL STRUCTURE OF MUTANT HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND 5d
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-07-14
Authors: Butini, S., Benz, J., Grether, U., Leibrock, L., Papa, A., Maramai, S., Carullo, G., Federico, S., Grillo, A., Di Guglielmo, B., Lamponi, S., Gemma, S., Campiani, G.
PDB entry 8ptd: The surface-exposed lipo-protein of BtuG1 in complex with cyanocobalamin.
Classification: TRANSPORT PROTEIN
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-07-14
Authors: Whittaker, J., Felices Martinez, J.M., Guskov, A., Slotboom, D.J.
PDB entry 8pte: Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to octadecavanadate ion (structure B)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.797 Å
Deposited: 2023-07-14
Authors: Tito, G., Ferraro, G., Merlino, A.
PDB entry 8ptf: The surface-exposed lipo-protein of BtuG2 in complex with cyanocobalamin.
Classification: TRANSPORT PROTEIN
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-14
Authors: Whittaker, J., Felices Martinez, J.M., Guskov, A., Slotboom, D.J.
PDB entry 8ptg: Structure of the transcription termination factor Rho bound to RNA at the PBS and SBS
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-14
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8pth: Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (open core | partial replicase conformation)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-07-14
Authors: Arragain, B., Cusack, S.
PDB entry 8pti: CRYSTAL STRUCTURE OF A Y35G MUTANT OF BOVINE PANCREATIC TRYPSIN INHIBITOR
Classification: PROTEINASE INHIBITOR (TRYPSIN)
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1990-12-17
Authors: Housset, D., Kim, K.-S., Fuchs, J., Woodward, C., Wlodawer, A.
PDB entry 8ptj: Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (close core | partial replicase conformation)
Classification: VIRAL PROTEIN
Source organism: Tilapia lake virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-07-14
Authors: Arragain, B., Cusack, S.
PDB entry 8ptk: Composite structure of Dynein-Dynactin-JIP3-LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2023-07-14
Authors: Singh, K., Lau, C.K., Manigrasso, G., Gassmann, R., Carter, A.P.
PDB entry 8ptl: human PHOX2B C-terminal domain including the polyA fragment at 278K
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-07-14
Authors: Anton, R., Trevino, M.A., Pantoja-Uceda, D., Felix, S., Babu, M., Cabrita, E.J., Zweckstetter, M., Tinnefeld, P., Vera, A.M., Oroz, J.
PDB entry 8ptm: Structure of the transcription termination factor Rho in complex with Rof and ADP
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-14
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8ptn: Structure of the transcription termination factor Rho in complex with Rof
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-14
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8pto: Structure of Rho pentamer in complex with Rof and ADP
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-07-14
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8ptp: Structure of Rho pentamer in complex with Rof
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-14
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8ptq: COMPLEX CRYSTAL STRUCTURE OF MUTANT HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND 5l
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-07-14
Authors: Butini, S., Grether, U., Benz, J., Leibrock, L., Maramai, S., Papa, A., Carullo, G., Federico, S., Grillo, A., Di Guglielmo, B., Lamponi, S., Gemma, S., Campiani, G.
PDB entry 8ptr: COMPLEX CRYSTAL STRUCTURE OF MUTANT HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND 5r
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-07-14
Authors: Butini, S., Benz, J., Grether, U., Leibrock, L., Papa, A., Maramai, S., Carullo, G., Federico, S., Grillo, A., Di Guglielmo, B., Lamponi, S., Gemma, S., Campiani, G.
PDB entry 8pts: human GUK1 in complex with compound AT8001
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-07-14
Authors: Zimberger, C., Canard, B., Ferron, F.
PDB entry 8ptt: Human NUDT5 in complex with MRK-952
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-07-14
Authors: Diaz-Saez, L., Koekemoer, L., Feyerherm, C., Sloman, S., Fischer, C., Schneider, S., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Huber, K.V.M.
PDB entry 8ptu: 2.5 A cryo-EM structure of the in vitro FimD-catalyzed assembly of type 1 pilus rod
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2023-07-14
Authors: Zyla, D., Hospenthal, M., Glockshuber, R., Waksman, G.
PDB entry 8ptv: IPNS variant N252Q in complex with Fe and ACV under anaerobic conditions
Classification: OXIDOREDUCTASE
Source organism: Aspergillus nidulans FGSC A4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-07-15
Authors: Rabe, P., Schofield, C.J.
PDB entry 8ptw: Chaetomium thermophilum Rix1-complex
Classification: RIBOSOME
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-07-15
Authors: Thoms, M., Cheng, J., Denk, T., Berninghausen, O., Beckmann, R.
PDB entry 8ptx: Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine
Classification: TRANSLATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-07-16
Authors: Abbassi, N., Jaciuk, M., Lin, T.-Y., Glatt, S.
PDB entry 8pty: Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-07-16
Authors: Abbassi, N., Jaciuk, M., Lin, T.-Y., Glatt, S.
PDB entry 8ptz: Cryo-EM structure of human Elp123 in complex with tRNA, S-ethyl-CoA, 5'-deoxyadenosine and methionine
Classification: TRANSLATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-07-16
Authors: Abbassi, N., Jaciuk, M., Lin, T.-Y., Glatt, S.
PDB entry 8pu0: Cryo-EM structure of human Elp123 in complex with tRNA, desulpho-CoA, 5'-deoxyadenosine and methionine
Classification: TRANSLATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.25 Å
Deposited: 2023-07-16
Authors: Abbassi, N., Jaciuk, M., Lin, T.-Y., Glatt, S.
PDB entry 8pu1: Structure of the toxin/antitoxin complex FaRel/ATfaRel2 with APCPP
Classification: ANTITOXIN
Source organism: Thomasclavelia ramosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.702 Å
Deposited: 2023-07-16
Authors: Garcia-Pino, A., Talavera Perez, A., Dominguez Molina, L.
PDB entry 8pu2: Structure of the antitoxin ATfaRel2
Classification: ANTITOXIN
Source organism: Coprobacillus sp. D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-07-16
Authors: Garcia-Pino, A., Talavera Perez, A., Dominguez Molina, L.
PDB entry 8pu3: Complex of the toxin/antitoxin FaRel2/ATfaRel2
Classification: ANTITOXIN
Source organism: Coprobacillus sp. D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-07-16
Authors: Garcia-Pino, A., Talavera Perez, A., Dominguez Molina, L.
PDB entry 8pu4: FaRel2 bound to the ATP analogue, APCPP
Classification: ANTITOXIN
Source organism: Coprobacillus sp. D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-07-16
Authors: Garcia-Pino, A., Talavera Perez, A., Dominguez Molina, L.
PDB entry 8pu5: Crystal structure of the Acyl-CoA dehydrogenase FadE1(PA0506) E441A from Pseudomonas aeruginosa complexed with C16CoA
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2023-07-16
Authors: Wang, M., Brear, P., Welch, M.
PDB entry 8pu6: Structure of immature HTLV-1 CA-NTD from in vitro assembled MA126-CANC tubes: pooled class
Classification: VIRAL PROTEIN
Source organism: Human T-cell leukemia virus type I
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-17
Authors: Obr, M., Percipalle, M., Chernikova, D., Yang, H., Thader, A., Pinke, G., Porley, D., Mansky, L.M., Dick, R.A., Schur, F.K.M.
PDB entry 8pu7: Structure of immature HTLV-1 CA-NTD from in vitro assembled MA126-CANC tubes: axis angle -20 degrees
Classification: VIRAL PROTEIN
Source organism: Human T-cell leukemia virus type I
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2023-07-17
Authors: Obr, M., Percipalle, M., Chernikova, D., Yang, H., Thader, A., Pinke, G., Porley, D., Mansky, L.M., Dick, R.A., Schur, F.K.M.
PDB entry 8pu8: Structure of immature HTLV-1 CA-NTD from in vitro assembled MA126-CANC tubes: axis angle -15 degrees
Classification: VIRAL PROTEIN
Source organism: Human T-cell leukemia virus type I
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-07-17
Authors: Obr, M., Percipalle, M., Chernikova, D., Yang, H., Thader, A., Pinke, G., Porley, D., Mansky, L.M., Dick, R.A., Schur, F.K.M.