LiteFold/PDB huggingface dataset:
PDB entry 7um4: Crystal structure of inactive 5-HT5AR in complex with AS2674723
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-04-06
Authors: Zhang, S., Roth, B.L.
PDB entry 7um5: CryoEM structure of Go-coupled 5-HT5AR in complex with 5-CT
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2022-04-06
Authors: Zhang, S., Fay, J.F., Roth, B.L.
PDB entry 7um6: CryoEM structure of Go-coupled 5-HT5AR in complex with Lisuride
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2022-04-06
Authors: Zhang, S., Fay, J.F., Roth, B.L.
PDB entry 7um7: CryoEM structure of Go-coupled 5-HT5AR in complex with Methylergometrine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2022-04-06
Authors: Zhang, S., Fay, J.F., Roth, B.L.
PDB entry 7um8: Crystal structure of E. Coli FabI in complex with NAD and (R,E)-3-(7-amino-8-oxo-6,7,8,9-tetrahydro-5H-pyrido[2,3-b]azepin-3-yl)-N-methyl-N-((3-methylbenzofuran-2-yl)methyl)acrylamide
Classification: ANTIBIOTIC
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-04-06
Authors: Hajian, B.
PDB entry 7um9: Human ALDH1A1 with bound compound CM38
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-04-06
Authors: Hurley, T.D.
PDB entry 7uma: Crystal structure of Tlde1a from Salmonella Typhimurium
Classification: TOXIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-04-06
Authors: Lorente Cobo, N., Prehna, G.
PDB entry 7umb: NanoBRET tracer Tram-bo bound to a KSR2-MEK1 complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.231 Å
Deposited: 2022-04-06
Authors: Marsiglia, W.M., Khan, K.M., Dar, A.C.
PDB entry 7umc: DENV1 SLA RNA (DenvSLATL)
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2022-04-06
Authors: Sun, Y.T., Varani, G., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7umd: DENV1 SLA three-way junction RNA (DenvSLAsh)
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2022-04-06
Authors: Sun, Y.T., Varani, G., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ume: DENV1 SLA top stemloop RNA (DenvTSL)
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2022-04-06
Authors: Sun, Y.T., Varani, G., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7umg: Crystal structure of human CD8aa-MR1-Ac-6-FP complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-04-06
Authors: Awad, W., Rossjohn, J.
PDB entry 7umh: Energetic robustness to large scale structural dynamics in a photosynthetic supercomplex
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-04-07
Authors: Harris, D., Toporik, H., Schlau-Cohen, G.S., Mazor, Y.
PDB entry 7umi: Importin a1 bound to Cp183-CTD
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-04-07
Authors: Yang, R., Cingolani, G.
PDB entry 7umj: Crystal structure of recombinant Solieria filiformis lectin (rSfL)
Classification: SUGAR BINDING PROTEIN
Source organism: Solieria filiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-04-07
Authors: Chaves, R.P., Bezerra, E.H.S., da Silva, F.M.S., Carneiro, R.F., Sampaio, A.H., Rocha, B.A.M., Nagano, C.S.
PDB entry 7umk: Structure of vesicular stomatitis virus (helical reconstruction, 4.1 A resolution)
Classification: VIRUS
Source organism: Vesicular stomatitis Indiana virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-04-07
Authors: Jenni, S., Horwitz, J.A., Bloyet, L.-M., Whelan, S.P.J., Harrison, S.C.
PDB entry 7uml: Structure of vesicular stomatitis virus (local reconstruction, 3.5 A resolution)
Classification: VIRAL PROTEIN/RNA
Source organism: Vesicular stomatitis Indiana virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-04-07
Authors: Jenni, S., Horwitz, J.A., Bloyet, L.-M., Whelan, S.P.J., Harrison, S.C.
PDB entry 7umm: H1 Solomon Islands 2006 hemagglutinin in complex with Ab109
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Solomon Islands/3/2006(H1N1)); Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-04-07
Authors: Windsor, I.W., Caradonna, T.M., Schmidt, A.G.
PDB entry 7umn: H1 Solomon Islands 2006 hemagglutinin in complex with Ab36
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Solomon Islands/3/2006(H1N1)); Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-04-07
Authors: Windsor, I.W., Caradonna, T.M., Schmidt, A.G.
PDB entry 7umo: Structure of Unc119-inhibitor complex.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-04-07
Authors: Srivastava, D., Sebag, J.A., Artemyev, N.O.
PDB entry 7ump: CRYSTAL STRUCTURE OF PHD2 CATALYTIC DOMAIN (CID 7465) IN COMPLEX WITH AKB-6548 AT 1.8 A RESOLUTION
Classification: OXIDOREDUCTASE, METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-04-07
Authors: Davie, D.R., Abendroth, J., Boyd, J.
PDB entry 7umq: Structure of Type I Prion filaments from Gerstmann-Straussler-Scheinker disease
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2022-04-07
Authors: Ozcan, K.A., Hoq, M.R., Bharath, S.R., Jiang, W.
PDB entry 7umr: The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001034732-1 (trans-form)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2022-04-07
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 7ums: Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Classification: VIRUS
Source organism: Homo sapiens; Rotavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-04-07
Authors: Jenni, S., Zongli, L., Wang, Y., Bessey, T., Salgado, E.N., Schmidt, A.G., Greenberg, H.B., Jiang, B., Harrison, S.C.
PDB entry 7umt: Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Classification: VIRUS
Source organism: Rotavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-04-07
Authors: Jenni, S., Zongli, L., Wang, Y., Bessey, T., Salgado, E.N., Schmidt, A.G., Greenberg, H.B., Jiang, B., Harrison, S.C.
PDB entry 7umu: Structure of MAP kinase phosphatase 5 in complex with 3,3-dimethyl-1-((5,6-dihydrobenzo[h]quinazolin-2-yl)thio)butan-2-one, an allosteric inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2022-04-07
Authors: Gannam, Z.T.K., Jamali, H., Lolis, E., Anderson, K.S., Ellman, J.A., Bennett, A.M.
PDB entry 7umv: Structure of MAP kinase phosphatase 5 in complex with 3,3-dimethyl-1-((5,6-dihydropyrido[2,3-h]quinazolin-2-yl)thio)butan-2-one, an allosteric inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-04-07
Authors: Gannam, Z.T.K., Jamali, H., Lolis, E., Anderson, K.S., Ellman, J.A., Bennett, A.M.
PDB entry 7umw: Crystal structure of E. Coli FabI in complex with NAD and Fabimycin ((S,E)-3-(7-amino-8-oxo-6,7,8,9-tetrahydro-5H-pyrido[2,3-b]azepin-3-yl)-N-methyl-N-((3-methylbenzofuran-2-yl)methyl)acrylamide)
Classification: ANTIBIOTIC
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-04-08
Authors: Hajian, B.
PDB entry 7umx: Crystal structure of Acinetobacter baumannii FabI in complex with NAD and (R,E)-3-(7-amino-8-oxo-6,7,8,9-tetrahydro-5H-pyrido[2,3-b]azepin-3-yl)-N-methyl-N-((3-methylbenzofuran-2-yl)methyl)acrylamide
Classification: ANTIBIOTIC
Source organism: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2022-04-08
Authors: Hajian, B.
PDB entry 7umy: Crystal structure of Acinetobacter baumannii FabI in complex with NAD and Fabimycin ((S,E)-3-(7-amino-8-oxo-6,7,8,9-tetrahydro-5H-pyrido[2,3-b]azepin-3-yl)-N-methyl-N-((3-methylbenzofuran-2-yl)methyl)acrylamide)
Classification: ANTIBIOTIC
Source organism: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2022-04-08
Authors: Hajian, B.
PDB entry 7umz: Cryo-EM structure of rabbit RyR1 in the presence of high Mg2+ and AMP-PCP in nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-04-08
Authors: Nayak, A.R., Samso, M.
PDB entry 7un0: Structure of MAP kinase phosphatase 5 in complex with 3,3-dimethyl-1-((9-chloro-5,6-dihydrobenzo[h]quinazolin-2-yl)thio)butan-2-one, an allosteric inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-04-08
Authors: Gannam, Z.T.K., Jamali, H., Lolis, E., Anderson, K.S., Ellman, J.A., Bennett, A.M.
PDB entry 7un1: 8-nm repeat of the human sperm tip singlet microtubule
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2022-04-08
Authors: Gui, M., Croft, J.T., Zabeo, D., Acharya, V., Kollman, J.M., Burgoyne, T., Hoog, J.L., Brown, A.
PDB entry 7un2: Crystal structure of a lectin from Canavalia maritima seed (ConM) complexed with Indole-3-butyric acid
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia rosea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-04-08
Authors: de Sousa, J.P., Bezerra, E.H.S., Sales, M.V., Queiroz, P.P., da Silva, F.M.S., Carvalho, C.P.S., Freire, V.N., Rocha, B.A.M.
PDB entry 7un3: Complex of UBE2O with NAP1L1 and ubiquitylated uL2
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-04-08
Authors: Yip, M.C.J., Sedor, S.F., Shao, S.
PDB entry 7un4: Structure of MAP kinase phosphatase 5 in complex with 3,3-dimethyl-1-((9-propyl-5,6-dihydrothieno[3,4-h]quinazolin-2-yl)thio)butan-2-one, an allosteric inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-04-08
Authors: Gannam, Z.T.K., Jamali, H., Lolis, E., Anderson, K.S., Ellman, J.A., Bennett, A.M.
PDB entry 7un5: Structure of Type II Prion filaments from Gerstmann-Straussler-Scheinker disease
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-04-08
Authors: Ozcan, K.A., Hoq, M.R., Bharath, S.R., Jiang, W.
PDB entry 7un6: Complex of UBE2O with NAP1L1
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-04-09
Authors: Yip, M.C.J., Sedor, S.F., Shao, S.
PDB entry 7un7: DNA Polymerase lambda in complex with a 1nt microhomology substrate
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-04-09
Authors: Jamsen, J.A.
PDB entry 7un8: SfSTING with c-di-GMP single fiber
Classification: ANTIVIRAL PROTEIN
Source organism: Sphingobacterium faecium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-04-09
Authors: Morehouse, B.R., Yip, M.C.J., Keszei, A.F.A., McNamara-Bordewick, N.K., Shao, S., Kranzusch, P.J.
PDB entry 7un9: SfSTING with c-di-GMP double fiber
Classification: ANTIVIRAL PROTEIN
Source organism: Sphingobacterium faecium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-04-09
Authors: Morehouse, B.R., Yip, M.C.J., Keszei, A.F.A., McNamara-Bordewick, N.K., Shao, S., Kranzusch, P.J.
PDB entry 7una: SfSTING with cGAMP (masked)
Classification: ANTIVIRAL PROTEIN
Source organism: Sphingobacterium faecium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-04-09
Authors: Morehouse, B.R., Yip, M.C.J., Keszei, A.F.A., McNamara-Bordewick, N.K., Shao, S., Kranzusch, P.J.
PDB entry 7unb: Crystal structure of malaria transmission-blocking antigen Pfs48/45-6C variant in complex with human antibodies RUPA-117 and RUPA-47
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2022-04-10
Authors: Hailemariam, S., McLeod, B., Julien, J.-P.
PDB entry 7unc: Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-10
Authors: Filipovski, M., Vos, S.M., Farnung, L.
PDB entry 7und: Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-10
Authors: Filipovski, M., Vos, S.M., Farnung, L.
PDB entry 7une: The V1 region of bovine V-ATPase in complex with human mEAK7 (focused refinement)
Classification: PROTON TRANSPORT
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2022-04-10
Authors: Wang, R., Li, X.
PDB entry 7unf: CryoEM structure of a mEAK7 bound human V-ATPase complex
Classification: PROTON TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.08 Å
Deposited: 2022-04-10
Authors: Wang, R., Li, X.
PDB entry 7ung: 48-nm repeat of the human respiratory doublet microtubule
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-04-11
Authors: Gui, M., Croft, J.T., Zabeo, D., Acharya, V., Kollman, J.M., Burgoyne, T., Hoog, J.L., Brown, A.
PDB entry 7unh: De novo designed chlorophyll dimer protein in apo state, SP2
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-04-11
Authors: Kennedy, M.A., Stoddard, B.L., Ennist, N.M.
PDB entry 7uni: De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester, SP2-ZnPPaM
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-04-11
Authors: Kennedy, M.A., Stoddard, B.L., Ennist, N.M.
PDB entry 7unj: De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester matching geometry of purple bacterial special pair, SP1-ZnPPaM
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-04-11
Authors: Kennedy, M.A., Stoddard, B.L., Ennist, N.M.
PDB entry 7unk: Structure of Importin-4 bound to the H3-H4-ASF1 histone-histone chaperone complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2022-04-11
Authors: Bernardes, N.E., Chook, Y.M., Fung, H.Y.J., Chen, Z., Li, Y.
PDB entry 7unl: Human TMEM175 in an open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2022-04-11
Authors: Oh, S., Hite, R.K.
PDB entry 7unm: Human TMEM175 in an closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2022-04-11
Authors: Oh, S., Hite, R.K.
PDB entry 7unn: Thiol-disulfide oxidoreductase TsdA from Corynebacterium diphtheriae
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-04-11
Authors: Osipiuk, J., Reardon-Robinson, M., Nguyen, M.T., Sanchez, B., Ton-That, H., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7uno: Thiol-disulfide oxidoreductase TsdA, C129S mutant, from Corynebacterium diphtheriae
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-04-11
Authors: Osipiuk, J., Reardon-Robinson, M., Nguyen, M.T., Sanchez, B., Ton-That, H., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7unp: Crystal structure of the CelR catalytic domain and CBM3c
Classification: HYDROLASE
Source organism: Acetivibrio thermocellus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-04-11
Authors: Bingman, C.A., Kuch, N., Kutsche, M.E., Parker, A., Smith, R.W., Fox, B.G.
PDB entry 7unq: Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-A)
Classification: RIBOSOME
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-04-11
Authors: Basu, R.S., Sherman, M.B., Gagnon, M.G.
PDB entry 7unr: Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
Classification: RIBOSOME
Source organism: Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-04-11
Authors: Basu, R.S., Sherman, M.B., Gagnon, M.G.
PDB entry 7unt: Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-B)
Classification: RIBOSOME
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-04-11
Authors: Basu, R.S., Sherman, M.B., Gagnon, M.G.
PDB entry 7unu: Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)
Classification: RIBOSOME
Source organism: Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-04-11
Authors: Basu, R.S., Sherman, M.B., Gagnon, M.G.
PDB entry 7unv: Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)
Classification: RIBOSOME
Source organism: Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-04-11
Authors: Basu, R.S., Sherman, M.B., Gagnon, M.G.
PDB entry 7unw: Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Classification: RIBOSOME
Source organism: Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-04-11
Authors: Basu, R.S., Sherman, M.B., Gagnon, M.G.
PDB entry 7unx: NMR solution structure of xanthusin-1
Classification: UNKNOWN FUNCTION
Experimental method: SOLUTION NMR
Deposited: 2022-04-12
Authors: Harvey, P.J., Craik, D.J.
PDB entry 7uny: Crystal structure of D2 nanobody in complex with PfCSS
Classification: CELL INVASION
Source organism: Plasmodium falciparum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 4.13 Å
Deposited: 2022-04-12
Authors: Scally, S.W., Lim, P.S., Cowman, A.F.
PDB entry 7unz: Crystal structure of H2 nanobody in complex with PfCSS
Classification: CELL INVASION
Source organism: Plasmodium falciparum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2022-04-12
Authors: Scally, S.W., Cowman, A.F.
PDB entry 7uo0: E.coli RNaseP Holoenzyme with Mg2+
Classification: HYDROLASE/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-04-12
Authors: Huang, W., Taylor, D.J.
PDB entry 7uo1: E.coli RNaseP Holoenzyme with Mg2+
Classification: HYDROLASE/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-04-12
Authors: Huang, W., Taylor, D.J.
PDB entry 7uo2: E.coli RNaseP Holoenzyme with Mg2+
Classification: HYDROLASE/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-04-12
Authors: Huang, W., Taylor, D.J.
PDB entry 7uo3: Co-crystal structure of Salmonella Typhimurium Tlde1a in complex with D-alanine
Classification: TOXIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-04-12
Authors: Lorente Cobo, N., Prehna, G.
PDB entry 7uo4: SARS-CoV-2 replication-transcription complex bound to Remdesivir triphosphate, in a pre-catalytic state
Classification: REPLICATION
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2022-04-12
Authors: Malone, B.F., Perry, J.K., Appleby, T.C., Feng, J.Y., Campbell, E.A., Darst, S.A.
PDB entry 7uo5: E.coli RNaseP Holoenzyme with Mg2+
Classification: HYDROLASE/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-04-12
Authors: Huang, W., Taylor, D.J.
PDB entry 7uo6: NMR structure of Pheromone-binding protein 2 in Ostrinia furnacalis
Classification: SIGNALING PROTEIN
Source organism: Ostrinia furnacalis
Experimental method: SOLUTION NMR
Deposited: 2022-04-12
Authors: Ayyappan, S., Mohanty, S.
PDB entry 7uo7: SARS-CoV-2 replication-transcription complex bound to ATP, in a pre-catalytic state
Classification: REPLICATION
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-04-12
Authors: Malone, B.F., Perry, J.K., Appleby, T.C., Feng, J.Y., Campbell, E.A., Darst, S.A.
PDB entry 7uo8: Co-crystal structure of Salmonella Typhimurium Tlde1a in complex with D-methionine
Classification: TOXIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-04-12
Authors: Lorente Cobo, N., Prehna, G.
PDB entry 7uo9: SARS-CoV-2 replication-transcription complex bound to UTP, in a pre-catalytic state
Classification: REPLICATION
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-04-12
Authors: Malone, B.F., Perry, J.K., Appleby, T.C., Feng, J.Y., Campbell, E.A., Darst, S.A.
PDB entry 7uoa: MAGEA4-MTP1 linear peptide complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-04-12
Authors: Williams, R.S., Tumbale, P.S.
PDB entry 7uob: SARS-CoV-2 replication-transcription complex bound to GTP, in a pre-catalytic state
Classification: REPLICATION
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2022-04-12
Authors: Malone, B.F., Perry, J.K., Appleby, T.C., Feng, J.Y., Campbell, E.A., Darst, S.A.
PDB entry 7uoc: Crystal structure of Orobanche minor KAI2d4
Classification: HYDROLASE
Source organism: Orobanche minor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-04-12
Authors: Burger, M., Chory, J.
PDB entry 7uod: Crystal structure of a lectin from Canavalia maritima seed (ConM) complexed with 2,4-dichloro-phenoxyacetic acid
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia rosea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-04-12
Authors: Sousa, J.P., Bezerra, E.H.S., Sales, M.V., Queiroz, P.P., da Silva, F.M.S., Carvalho, C.P.S., Freire, V.N., Rocha, B.A.M.
PDB entry 7uoe: SARS-CoV-2 replication-transcription complex bound to CTP, in a pre-catalytic state
Classification: REPLICATION
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2022-04-12
Authors: Malone, B.F., Perry, J.K., Appleby, T.C., Feng, J.Y., Campbell, E.A., Darst, S.A.
PDB entry 7uof: Dihydroorotase from M. jannaschii
Classification: HYDROLASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-04-12
Authors: Vitali, J., Nix, J.C., Newman, H.E., Colaneri, M.J.
PDB entry 7uog: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and asymmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2022-04-12
Authors: Ward, A.R., Snow, C.D.
PDB entry 7uoh: PRMT5/MEP50 crystal structure with MTA and an achiral, class 1, non-atropisomeric inhibitor bound
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-04-12
Authors: Gunn, R.J., Thomas, N.C., Lawson, J.D., Ivetac, A., Kulyk, S., Smith, C.R., Marx, M.A.
PDB entry 7uoi: Crystallographic structure of DapE from Enterococcus faecium
Classification: HYDROLASE
Source organism: Enterococcus faecium 1,231,410
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-04-12
Authors: Gonzalez-Segura, L., Diaz-Vilchis, A., Terrazas-Lopez, M., Diaz-Sanchez, A.G.
PDB entry 7uoj: The CryoEM structure of N49-P9.6-FR3 and PGT121 Fabs in complex with BG505 SOSIP.664
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2022-04-13
Authors: Nguyen, D.N., Tolbert, W.D., Pazgier, M.
PDB entry 7uol: Endogenous dihydrolipoamide succinyltransferase (E2) core of 2-oxoglutarate dehydrogenase complex from bovine kidney
Classification: TRANSFERASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-04-13
Authors: Liu, S., Xia, X., Zhen, J., Li, Z.H., Zhou, Z.H.
PDB entry 7uom: Endogenous dihydrolipoamide acetyltransferase (E2) core of pyruvate dehydrogenase complex from bovine kidney
Classification: TRANSFERASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-04-13
Authors: Liu, S., Xia, X., Zhen, J., Li, Z.H., Zhou, Z.H.
PDB entry 7uon: CTX-M-14 Y105W mutant
Classification: ANTIMICROBIAL PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-04-13
Authors: Judge, A., Hu, L., Sankaran, B., Van Riper, J., Prasad, B.V.V., Palzkill, T.
PDB entry 7uoo: Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.34 Å
Deposited: 2022-04-13
Authors: Sekulski, K., Cruz, V.E., Weirich, C.S., Erzberger, J.P.
PDB entry 7uop: Prefusion-stabilized Nipah virus fusion protein complexed with Fab 4H3
Classification: VIRAL PROTEIN/Immune System
Source organism: Mus musculus; Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-04-13
Authors: Byrne, P.O., McLellan, J.S.
PDB entry 7uoq: CRYSTAL STRUCTURE OF HIV-1 INTEGRASE COMPLEXED WITH (2S)-2-(TERT-BUTOXY)-2-(5-{2-[(2-CHLORO-6-M ETHYLPHENYL)METHYL]-1,2,3,4-TETRAHYDROISOQUINOLIN-6-YL}-4- (4,4-DIMETHYLPIPERIDIN-1-YL)-2-METHYLPYRIDIN-3-YL)ACETIC ACID
Classification: TRANSFERASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8867 Å
Deposited: 2022-04-13
Authors: Lewis, H.A., Muckelbauer, J.K.
PDB entry 7uor: Crystal structure of cytochrome P450 enzyme CYP119 in complex with methyliridium(III) mesoporphyrin.
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus acidocaldarius
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2022-04-13
Authors: Pereira, J.H., Bloomer, B.J., Hartwig, J.F., Adams, P.D.
PDB entry 7uos: Structure of WNK1 inhibitor complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-04-13
Authors: Akella, R., Goldsmith, E.J., Akella, R.
PDB entry 7uot: Native Lassa glycoprotein in complex with neutralizing antibodies 8.9F and 37.2D
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lassa virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-04-13
Authors: Li, H., Saphire, E.O.
PDB entry 7uov: Native Lassa glycoprotein in complex with neutralizing antibodies 12.1F and 37.2D
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lassa virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2022-04-14
Authors: Li, H., Saphire, E.O.
PDB entry 7uow: SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 034_32
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2022-04-14
Authors: Patel, A., Ortlund, E.
PDB entry 7uox: NDM1-inhibitor co-structure
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2022-04-14
Authors: Scapin, G., Fischmann, T.O.
PDB entry 7uoy: NDM1-inhibitor co-structure
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-04-14
Authors: Scapin, G., Fischmann, T.O.
PDB entry 7up1: NDM1-inhibitor co-structure
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2022-04-14
Authors: Scapin, G., Fischmann, T.O.
PDB entry 7up2: NDM1-inhibitor co-structure
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2022-04-14
Authors: Scapin, G., Fischmann, T.O.
PDB entry 7up3: NDM1-inhibitor co-structure
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-04-14
Authors: Scapin, G., Fischmann, T.O.
PDB entry 7up4: Crystal structure of C-terminal Domain of MSK1 in complex with covalently bound pyrrolopyrimidine compound 20 (co-crystal)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-04-14
Authors: Yano, J.K., Abendroth, J., Hall, A.
PDB entry 7up5: Crystal structure of C-terminal Domain of MSK1 in complex with covalently bound pyrrolopyrimidine compound 23 (co-crystal)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-04-14
Authors: Yano, J.K., Edwards, T.E., Hall, A.
PDB entry 7up6: Crystal structure of C-terminal domain of MSK1 in complex with in covalently bound literature RSK2 inhibitor pyrrolopyrimidine cyanoacrylamide compound 25 (co-crystal)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-04-14
Authors: Yano, J.K., Abendroth, J., Hall, A.
PDB entry 7up7: Crystal structure of C-terminal Domain of MSK1 in complex with covalently bound with literature RSK2 inhibitor indazole cyanoacrylamide compound 26 (soak)
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-04-14
Authors: Yano, J.K., Abendroth, J., Hall, A.
PDB entry 7up8: Crystal structure of C-terminal Domain of MSK1 in complex with covalently bound pyrrolopyrimidine compound 27 (co-crystal)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-04-14
Authors: Yano, J.K., Abendroth, J., Hall, A.
PDB entry 7up9: Prefusion-stabilized Nipah virus fusion protein complexed with Fab 2D3
Classification: VIRAL PROTEIN/Immune System
Source organism: Mus musculus; Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-04-14
Authors: Byrne, P.O., McLellan, J.S.
PDB entry 7upa: Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1H8
Classification: VIRAL PROTEIN/Immune System
Source organism: Mus musculus; Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-04-14
Authors: Byrne, P.O., McLellan, J.S.
PDB entry 7upb: Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1H1
Classification: VIRAL PROTEIN/Immune System
Source organism: Mus musculus; Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-14
Authors: Byrne, P.O., McLellan, J.S.
PDB entry 7upd: Prefusion-stabilized Nipah virus fusion protein complexed with Fab 2B12
Classification: VIRAL PROTEIN/Immune System
Source organism: Mus musculus; Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-04-14
Authors: Byrne, P.O., McLellan, J.S.
PDB entry 7upe: Tau Paired Helical Filament from Alzheimer's Disease not incubated with EGCG
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-04-15
Authors: Seidler, P.M., Murray, K.A., Boyer, D.R., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 7upf: Tau Paired Helical Filament from Alzheimer's Disease incubated 1 hr. with EGCG
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-04-15
Authors: Seidler, P.M., Murray, K.A., Boyer, D.R., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 7upg: Tau Paired Helical Filament from Alzheimer's Disease incubated with EGCG for 3 hours
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-04-15
Authors: Seidler, P.M., Murray, K.A., Boyer, D.R., Ge, P., Sawaya, M.R., Eisenberg, D.S.
PDB entry 7uph: Structure of a ribosome with tethered subunits
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2022-04-15
Authors: Kim, D.S., Watkins, A., Bidstrup, E., Lee, J., Topkar, V.V., Kofman, C., Schwarz, K.J., Liu, Y., Pintilie, G., Roney, E., Das, R., Jewett, M.C.
PDB entry 7upi: Cryo-EM structure of SHOC2-PP1c-MRAS holophosphatase complex
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2022-04-15
Authors: Fuller, J.R., Hajian, B., Lemke, C., Kwon, J., Bian, Y., Aguirre, A.
PDB entry 7upj: HIV-1 PROTEASE/U101935 COMPLEX
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1996-12-05
Authors: Watenpaugh, K.D., Janakiraman, M.N.
PDB entry 7upk: Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1A9
Classification: VIRAL PROTEIN/Immune System
Source organism: Mus musculus; Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-04-15
Authors: Byrne, P.O., McLellan, J.S.
PDB entry 7upl: SARS-Cov2 Omicron varient S protein structure in complex with neutralizing monoclonal antibody 002-S21F2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-04-15
Authors: Patel, A., Ortlund, E.
PDB entry 7upm: Tribbles (TRIB2) pseudokinase bound to nanobody Nb4.103
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-04-15
Authors: Jamieson, S.A., Mace, P.D.
PDB entry 7upn: Maedi visna virus Vif in complex with CypA and E3 ubiquitin ligase
Classification: ISOMERASE/VIRAL PROTEIN
Source organism: Homo sapiens; Visna-maedi virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-04-16
Authors: Hu, Y., Xiong, Y.
PDB entry 7upo: Crystal structure of designed heterotrimeric assembly DHT03
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-04-16
Authors: Chang, Y., Bhabha, G., Ekiert, D.C.
PDB entry 7upp: Crystal structure of designed heterotrimeric assembly DHT03_2arm_A21/B21/C long
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2022-04-16
Authors: Chang, Y., Bhabha, G., Ekiert, D.C.
PDB entry 7upq: Crystal structure of designed heterotrimeric assembly DHT03_1arm_A21/B/C
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2022-04-16
Authors: Chang, Y., Bhabha, G., Ekiert, D.C.
PDB entry 7upr: Human mitochondrial AAA protein ATAD1 (with a catalytic dead mutation) in complex with a peptide substrate (closed conformation)
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-04-16
Authors: Wang, L., Toutkoushian, H., Belyy, V., Kokontis, C., Walter, P.
PDB entry 7ups: Structural study of Legionella pneumophila effector DotY (Lpg0294)
Classification: CELL INVASION
Source organism: Legionella pneumophila subsp. pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2022-04-16
Authors: Chung, I.Y.W., Cygler, M.
PDB entry 7upt: Human mitochondrial AAA protein ATAD1 (with a catalytic dead mutation) in complex with a peptide substrate (open conformation)
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-04-16
Authors: Wang, L., Toutkoushian, H., Belyy, V., Kokontis, C., Walter, P.
PDB entry 7upv: Structure of maize BZR1-type beta-amylase provides new insights into its noncatalytic adaptation
Classification: HYDROLASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-04-18
Authors: Palayam, M., Sun, F., Shabek, N.
PDB entry 7upw: Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-04-18
Authors: Zhang, J., Luo, S., Kreutzberger, A., Kirchhausen, T., Chen, B., Haynes, B., Alt, F.
PDB entry 7upx: Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-04-18
Authors: Zhang, J., Luo, S., Kreutzberger, A., Kirchhausen, T., Chen, B., Haynes, B., Alt, F.
PDB entry 7upy: An antibody from single human VH-rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-04-18
Authors: Zhang, J., Luo, S., Kreutzberger, A., Kirchhausen, T., Chen, B., Haynes, B., Alt, F.
PDB entry 7upz: Structural basis for cell type specific DNA binding of C/EBPbeta: the case of cell cycle inhibitor p15INK4b promoter
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.487 Å
Deposited: 2022-04-18
Authors: Lountos, G.T., Cherry, S., Tropea, J.E., Wlodawer, A., Miller, M.
PDB entry 7uq0: Putative periplasmic iron siderophore binding protein FecB (Rv3044) from Mycobacterium tuberculosis
Classification: siderophore binding protein
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-04-18
Authors: Chao, A., Cuthbert, B.J., Goulding, C.W.
PDB entry 7uq1: The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with AMP and a single Mg ion at the dinuclear binding site
Classification: LIGASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-04-18
Authors: Cuypers, M.G., Subramanian, C., Seetharaman, J., Rock, C.O., White, S.W.
PDB entry 7uq2: Vs.4 from T4 phage in complex with cGAMP
Classification: VIRAL PROTEIN
Source organism: Tequatrovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-04-18
Authors: Jenson, J.M., Chen, Z.J.
PDB entry 7uq3: JmjC domain-containing protein 5 (JMJD5) in complex with Mn and (S)-2-(1-hydroxy-2,5-dioxopyrrolidin-3-yl)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2022-04-19
Authors: Chowdhury, R., Islam, M.S., Schofield, C.J.
PDB entry 7uq6: tRNA T-box antiterminator fusion, construct #4
Classification: RNA
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.951 Å
Deposited: 2022-04-19
Authors: Grigg, J.C., Price, I.R., Ke, A.
PDB entry 7uq9: S48T Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-04-19
Authors: Zheng, C., Boxer, S.G.
PDB entry 7uqa: Crystal structure of the small Ultra-Red Fluorescent Protein (smURFP)
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.802 Å
Deposited: 2022-04-19
Authors: Maiti, A., Buffalo, C.Z., Saurabh, S., Montecinos-Franjola, F., Hachey, J.S., Conlon, W.J., Tran, G.N., Drobizhev, M., Moerner, W.E., Ghosh, P., Matsuo, H., Tsien, R.Y., Lin, J.Y., Rodriguez, E.A.
PDB entry 7uqb: Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2022-04-19
Authors: Sekulski, K., Cruz, V.E., Weirich, C.S., Erzberger, J.P.
PDB entry 7uqc: phospho-GlialCAM peptide AA370-389 with Fab MS39p2w174
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-04-19
Authors: Lanz, T.V., Robinson, W.H., Fernandez, D.
PDB entry 7uqi: Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ADP
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-04-19
Authors: Wang, F., Feng, X., Li, H.
PDB entry 7uqj: Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ATPgS and histone H3 tail in state II
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-19
Authors: Wang, F., Feng, X., Li, H.
PDB entry 7uqk: Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ADP
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-04-19
Authors: Wang, F., Feng, X., Li, H.
PDB entry 7uql: Pathogenesis related 10-10 app from
Classification: BIOSYNTHETIC PROTEIN
Source organism: Papaver somniferum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-04-19
Authors: Carr, S.C., Ng, K.K.S.
PDB entry 7uqm: Pathogenesis related 10-10 papaverine complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Papaver somniferum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-04-19
Authors: Carr, S.C., Ng, K.K.S.
PDB entry 7uqn: Pathogenesis related 10-10 noscapine complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Papaver somniferum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-04-19
Authors: Carr, S.C., Ng, K.K.S.
PDB entry 7uqo: Pathogenesis related 10-10 (S)-tetrahydropapaverine complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Papaver somniferum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-04-19
Authors: Carr, S.C., Ng, K.K.S.
PDB entry 7uqr: Cryo-EM structure of the pancreatic ATP-sensitive potassium channel in the apo form with Kir6.2-CTD in the down conformation
Classification: MEMBRANE PROTEIN
Source organism: Cricetus cricetus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.55 Å
Deposited: 2022-04-20
Authors: Shyng, S.L., Sung, M.W., Driggers, C.M.
PDB entry 7uqt: Solution NMR structure of hexahistidine tagged QseM (6H-QseM)
Classification: PROTEIN BINDING
Source organism: Mesorhizobium japonicum R7A
Experimental method: SOLUTION NMR
Deposited: 2022-04-20
Authors: Hall, D.A., Solomon, P.D., Bond, C.S., Ramsay, J.P., Mackay, J.P.
PDB entry 7uqu: Crystal Structure of Mouse Cadherin-23 EC9
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.976 Å
Deposited: 2022-04-20
Authors: Sandhu, J.S., De La Torre, P., Sotomayor, M.
PDB entry 7uqv: Pseudobacteroides cellulosolvens pseudo-CphB
Classification: HYDROLASE
Source organism: Pseudobacteroides cellulosolvens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-04-20
Authors: Sharon, I., Schmeing, T.M.
PDB entry 7uqw: PCC6803 Cyanophycinase S132DAP covalently bound to cyanophycin dimer
Classification: HYDROLASE
Source organism: Synechocystis sp. PCC 6803
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-04-20
Authors: Sharon, I., Schmeing, T.M.
PDB entry 7uqx: Cryo-EM structure of the human Exostosin-1 and Exostosin-2 heterodimer in complex with UDP-GlcNAc
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-04-20
Authors: Li, H., Li, H.
PDB entry 7uqy: Cryo-EM structure of the human Exostosin-1 and Exostosin-2 heterodimer in complex with UDP-GlcA
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-04-20
Authors: Li, H., Li, H.
PDB entry 7uqz: Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2022-04-20
Authors: Sekulski, K., Cruz, V.E., Weirich, C.S., Erzberger, J.P.