LiteFold/PDB huggingface dataset:
PDB entry 9t9w: Crystal structure of beta-TrCP bound by diphosphorylated I-kappa-B-alpha degron peptide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.162 Å
Deposited: 2025-11-17
Authors: Collie, W.G.
PDB entry 9ta3: Cryo-EM structure of Heyndrickxia coagulans beta-galactosidase
Classification: HYDROLASE
Source organism: Heyndrickxia coagulans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-11-18
Authors: Sanita, G., Maresca, E., Aulitto, M., Capaldi, S., Esposito, E., Contursi, P.
PDB entry 9ta4: Pyrococcus abyssi Rubredoxin @ 0.55 Angstrom resolution, 50 kGy structure
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus abyssi GE5
Experimental method: X-RAY DIFFRACTION
Resolution: 0.545 Å
Deposited: 2025-11-18
Authors: Bourenkov, G., Paknia, E., Flensburg, C., Fogh, R., Keller, P., Vonrhein, C., Bricogne, G., Chari, A.
PDB entry 9ta5: PITP covalently bound to microcolin H
Classification: LIPID TRANSPORT
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-11-18
Authors: Eisenreichova, A., Klima, M., Boura, E.
PDB entry 9ta6: Rubredoxin @ 0.57 Angstrom resolution, 1 MGy structure
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus abyssi GE5
Experimental method: X-RAY DIFFRACTION
Resolution: 0.567 Å
Deposited: 2025-11-18
Authors: Bourenkov, G., Paknia, E., Flensburg, C., Fogh, R., Keller, P., Vonrhein, C., Bricogne, G., Chari, A.
PDB entry 9tad: mCoral: a mCherry variant with cysteine replacing methionine in the chromophore
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-11-18
Authors: Zitti, A., Rizkallah, P.J., Jones, D.D.
PDB entry 9taq: De novo photoenzyme variant ABLE-E116C-TXT H49A-L42T (photoABLE1 precursor) in complex with substrate
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-11-18
Authors: Boesen, B., Heider, A., O'Shea, J.M., Groll, M., Bach, T., Zeymer, C.
PDB entry 9tar: De novo photoenzyme variant ABLE-E116C-TXT H49A-L42T (photoABLE1 precursor) in complex with product formed in crystallo after irradiation
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-11-18
Authors: Boesen, B., Heider, A., O'Shea, J.M., Groll, M., Bach, T., Zeymer, C.
PDB entry 9tas: De novo photoenzyme photoABLE1 in complex with substrate
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-11-18
Authors: Boesen, B., Heider, A., O'Shea, J.M., Groll, M., Bach, T., Zeymer, C.
PDB entry 9tat: De novo photoenzyme photoABLE1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-11-18
Authors: Boesen, B., Heider, A., O'Shea, J.M., Groll, M., Bach, T., Zeymer, C.
PDB entry 9tau: De novo photoenzyme variant ABLE-E116C-TXT V111H-L53A (photoABLE2 precursor) in complex with substrate
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-11-18
Authors: Boesen, B., Heider, A., O'Shea, J.M., Groll, M., Bach, T., Zeymer, C.
PDB entry 9tav: De novo photoenzyme photoABLE2 in complex with substrate
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-11-18
Authors: Boesen, B., Heider, A., O'Shea, J.M., Groll, M., Bach, T., Zeymer, C.
PDB entry 9tb1: Crystal structure of an acylated GLP-1/GIP analogue peptide
Classification: HORMONE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-11-19
Authors: Mitchell, H.M., Nocek, B., Guinn, E.J., Heng, J.Y.Y.
PDB entry 9tb4: SAM-dependent C6-FPP methytransferase from Streptomyces varsoviensis in complex with SAH and FPP
Classification: TRANSFERASE
Source organism: Streptomyces varsoviensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-11-19
Authors: Li, H., Schnakenburg, G., Groll, M., Dickschat, J.S.
PDB entry 9tbd: Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form
Classification: MEMBRANE PROTEIN
Source organism: Erythrobacter
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-11-19
Authors: Haubner, M., Williams, H.M., Hruby, J., Straub, M.S., Guskov, A., Kovalev, K., Drabbels, M., Lorenz, U.J.
PDB entry 9tbe: Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the K2 state
Classification: MEMBRANE PROTEIN
Source organism: Erythrobacter
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-11-19
Authors: Haubner, M., Williams, H.M., Hruby, J., Straub, M.S., Guskov, A., Kovalev, K., Drabbels, M., Lorenz, U.J.
PDB entry 9tbf: Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the O2 state
Classification: MEMBRANE PROTEIN
Source organism: Erythrobacter
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-11-19
Authors: Haubner, M., Williams, H.M., Hruby, J., Straub, M.S., Guskov, A., Kovalev, K., Drabbels, M., Lorenz, U.J.
PDB entry 9tbh: Hepatitis A Virus in Complex with LDLR Receptor
Classification: VIRUS
Source organism: Human hepatitis A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.7 Å
Deposited: 2025-11-20
Authors: Zhao, Y., Stuart, D., Lemon, S.M., Duyvesteyn, H., Shah, P., Fry, E.
PDB entry 9tbi: Hepatitis A Virus in complex with GD1a
Classification: VIRUS
Source organism: Human hepatitis A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.7 Å
Deposited: 2025-11-20
Authors: Zhao, Y., Stuart, D., Lemon, S.M., Duyvesteyn, H., Shah, P., Fry, E.
PDB entry 9tbj: Leishmania mexicana secreted acid phosphatase
Classification: HYDROLASE
Source organism: Leishmania mexicana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-11-20
Authors: Bose, P., Grossman-Haham, I.
PDB entry 9tbl: SSX Lysozyme at 100K
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-11-20
Authors: Bjelcic, M., Branden, G., Ghosh, S.
PDB entry 9tbm: From KRASG12D to pan-KRAS inhibitors
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-11-20
Authors: Cleasby, A., Day, P.
PDB entry 9tbr: From KRASG12D to pan-KRAS inhibitors
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-11-20
Authors: Cleasby, A., Day, P.
PDB entry 9tbw: From KRASG12D to pan-KRAS inhibitors
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-11-20
Authors: Cleasby, A., Day, P.
PDB entry 9tc0: From KRASG12D to pan-KRAS inhibitors
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-11-20
Authors: Cleasby, A., Day, P.
PDB entry 9tc2: From KRASG12D to pan-KRAS inhibitors
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-11-20
Authors: Cleasby, A., Day, P.
PDB entry 9tc5: From KRASG12D to pan-KRAS inhibitors
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-11-20
Authors: Cleasby, A., Day, P.
PDB entry 9tc6: From KRASG12D to pan-KRAS inhibitors
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-11-20
Authors: Cleasby, A., Day, P.
PDB entry 9tca: Crystal Structure of a tRNA acceptor stem mimic at 1.94 A resolution
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.944 Å
Deposited: 2025-11-20
Authors: Bellini, D., Liu, Z., El Omari, K.
PDB entry 9tcb: Catalytic domain of human PARP15 in complex with BAD
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-11-21
Authors: Paakkonen, J., Lehtio, L.
PDB entry 9tcg: Crystal Structure of a prebiotic tRNA acceptor stem mimic
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2025-11-21
Authors: Bellini, D., Liu, Z.W., El Omari, K.
PDB entry 9td3: ERAP1 in complex with 1-[2-(6-bromo-2,2-difluoro-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-4-yl)acetamido]cyclohexane-1-carboxylic acid
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-11-22
Authors: Rowland, P.
PDB entry 9td4: ERAP1 in complex with 1-[2-(2-oxo-5-phenyl-2,3-dihydro-1,3-benzoxazol-3-yl)acetamido]cyclohexane-1-carboxylic acid
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-11-22
Authors: Rowland, P.
PDB entry 9td5: ERAP1 in complex with 1-[2-(5-chloro-2-oxo-2,3-dihydro-1,3-benzothiazol-3-yl)acetamido]cyclohexane-1-carboxylic acid
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-11-22
Authors: Rowland, P.
PDB entry 9td7: ERAP1 in complex with 1-[2-(3-oxo-6-phenyl-3,4-dihydro-2H-1,4-benzoxazin-4-yl)acetamido]cyclohexane-1-carboxylic acid
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-11-22
Authors: Rowland, P.
PDB entry 9tds: cryo-EM structure of dephosphorylated mTOR complex 2, overall refinement
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-11-24
Authors: Hay, I.M., Anandapadamanaban, M., Williams, R.L.
PDB entry 9tdt: cryo-EM structure of dephosphorylated mTOR complex 2, focused on a single protomer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-11-24
Authors: Hay, I.M., Anandapadamanaban, M., Williams, R.L.
PDB entry 9tdu: Structure of Fructofuranosidase from Purpureocilum lilacinum
Classification: HYDROLASE
Source organism: Komagataella phaffii CBS 7435
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-11-24
Authors: Ruiz-Nunez, M., Sanz-Aparicio, J.
PDB entry 9tdv: Structure of D81A-Fructofuranosidase from Purpureocilum lilacinum in complex with raffinose
Classification: HYDROLASE
Source organism: Komagataella phaffii CBS 7435
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-11-24
Authors: Ruiz-Nunez, M., Sanz-Aparicio, J.
PDB entry 9tdw: Structure of D81A-Fructofuranosidase from Purpureocilum lilacinum in complex with fructose
Classification: HYDROLASE
Source organism: Komagataella phaffii CBS 7435
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-11-24
Authors: Ruiz-Nunez, M., Sanz-Aparicio, J.
PDB entry 9tdx: Structure of D81A-Fructofuranosidase from Purpureocilum lilacinum in complex with sucrose
Classification: HYDROLASE
Source organism: Komagataella phaffii CBS 7435
Experimental method: X-RAY DIFFRACTION
Resolution: 2.004 Å
Deposited: 2025-11-24
Authors: Ruiz-Nunez, M., Sanz-Aparicio, J.
PDB entry 9tdz: Crystal structure of beta-TrCP bound by diphosphorylated claspin degron peptide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.346 Å
Deposited: 2025-11-24
Authors: Collie, W.G.
PDB entry 9teb: Crystal structure of Nocardia cyriacigeorgica, class A beta-lactamase, NCY-1 bound to Avibactam
Classification: HYDROLASE
Source organism: Nocardia cyriacigeorgica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-11-25
Authors: Couston, J., Le-Marchand, A., Hodille, E., Genestet, C., Joannard, B., Feuillard, J., Benito, Y., Dumitrescu, O., Blaise, M.
PDB entry 9teh: PhiC31 excisive synapse; attL x attL with an integraseS12A-RDF protein fusion
Classification: RECOMBINATION
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.23 Å
Deposited: 2025-11-25
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9tei: Fosfomycin-resistance protein from Klebsiella pneumoniae (FosAKP) crystal structure by beam sweeping serial crystallography
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-11-25
Authors: Rodrigues, A.C., Guenther, S., Fischer, P., Senst, J.M., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Meents, A.
PDB entry 9tej: Lysozyme crystal structure by beam sweeping serial crystallography with pink beam
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-11-25
Authors: Rodrigues, A.C., Guenther, S., Fischer, P., Senst, J.M., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Meents, A.
PDB entry 9tek: Lysozyme crystal structure by beam sweeping serial crystallography
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-11-25
Authors: Rodrigues, A.C., Guenther, S., Fischer, P., Senst, J.M., Reinke, P.Y.A., Falke, S., Thekku Veedu, S., Meents, A.
PDB entry 9tel: Structure of chicken LGP2 bound to 10-mer RNA mismatched duplex that mimics the influenza B virus vRNA promoter (panhandle) and to ADP-AlF4-Mg.
Classification: RNA BINDING PROTEIN
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.436 Å
Deposited: 2025-11-25
Authors: Cusack, S., Uchikawa, E., Ivanov, I.
PDB entry 9ten: PhiC31 excisive synapse: B-bound subregion
Classification: RECOMBINATION
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-11-25
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9teo: PhiC31 excisive synapse: P'-bound subregion
Classification: RECOMBINATION
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-11-25
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9tep: PhiC31 integraseS12A-attB-RDF complex
Classification: RECOMBINATION
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2025-11-25
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9teq: PhiC31 integraseS12A-attB-RDF complex: B-bound subregion
Classification: RECOMBINATION
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-11-25
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9ter: PhiC31 integraseS12A-attB-RDF complex: B'-bound subregion
Classification: RECOMBINATION
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-11-25
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9tes: Crystal structure of beta-TrCP bound by diphosphorylated PDCD4 degron peptide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.217 Å
Deposited: 2025-11-26
Authors: Collie, W.G.
PDB entry 9tet: Oligomerisation of type III CRISPR-associated Csx15 to regulate antiviral signalling
Classification: VIRAL PROTEIN
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-11-26
Authors: McMahon, S.A., Chi, H., Graham, S., White, M.F.
PDB entry 9teu: Oligomerisation of type III CRISPR-associated Csx15 to regulate antiviral signalling
Classification: ANTIVIRAL PROTEIN
Source organism: Chlorobaculum limnaeum
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 2025-11-26
Authors: McMahon, S.A., Chi, H., Graham, S., White, M.F.
PDB entry 9tf5: Structure of human wild-type signal regulatory protein alpha V2 variant (SIRPaV2) with zinc
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-11-27
Authors: Garcin, E.D., Miller, T.W.
PDB entry 9tfu: Crystal structure of beta-TrCP bound by monophosphorylated ATF4 degron peptide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2025-11-27
Authors: Collie, W.G.
PDB entry 9tfw: Arabidopsis thaliana Casein Kinase 2 (CK2) alpha isoform 3 apo
Classification: CELL CYCLE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-11-27
Authors: Sturm, K., Hothorn, M.
PDB entry 9tfx: Arabidopsis thaliana Casein Kinase 2 (CK2) alpha isoform 1 in complex with inositol hexakisphosphate (InsP6)
Classification: CELL CYCLE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-11-27
Authors: Sturm, K., Hothorn, M.
PDB entry 9tfy: Arabidopsis thaliana Casein Kinase 2 (CK2) alpha1 - beta1 complex bound to inositol hexakisphosphate (InsP6)
Classification: CELL CYCLE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 5.5 Å
Deposited: 2025-11-27
Authors: Sturm, K., Hothorn, M.
PDB entry 9tg4: Structure of the YbjP lipoprotein bound to the AcrABZ-TolC efflux pump
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-11-28
Authors: Kaplan, E., Harris, A., Horne, J., Petsolari, E., Luisi, B.
PDB entry 9tg7: Crystal structure of beta-TrCP bound by monophosphorylated WEE1 degron peptide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.684 Å
Deposited: 2025-11-28
Authors: Collie, W.G.
PDB entry 9tgg: Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with bound plastocyanin
Classification: OXIDOREDUCTASE
Source organism: Spinacia oleracea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-12-01
Authors: Pietras, R., Sarewicz, M., Szwalec, M., Indyka, P., Rawski, M., Pintscher, S., Mielecki, B., Jaciuk, M., Koziej, L., Glatt, S., Osyczka, A.
PDB entry 9tgn: Cryo-EM structure of Z-DNA binding antibody Z-D11 in complex with left-handed Z-DNA
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-12-02
Authors: Chin, D.H.R., Luo, Y.B., Luo, D.
PDB entry 9tgo: Cryo-EM structure of Z22 mAb in complex with left-handed Z-DNA (dimer of trimer)
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-12-02
Authors: Chin, D.H.R., Luo, Y.B., Luo, D.
PDB entry 9tgw: Cryo-EM structure of Z22 antibody in complex with left-handed Z-DNA (trimer)
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-12-02
Authors: Chin, D.H.R., Luo, Y.B., Luo, D.
PDB entry 9th6: nsp14 of SARS-CoV-2 in complex with a camelid nanobody
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.267 Å
Deposited: 2025-12-02
Authors: Gauffre, P., Ferron, F., Canard, B.
PDB entry 9thj: Crystal structure of H5N1 influenza polymerase PB2 domain in complex with compound 3
Classification: TRANSFERASE
Source organism: Influenza A virus (A/duck/Shantou/4610/2003(H5N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 0.91 Å
Deposited: 2025-12-03
Authors: Kuglstatter, A., Ehler, A.
PDB entry 9thm: TAF15 amyloid filament fold B variant 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.64 Å
Deposited: 2025-12-03
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9thn: TAF15 amyloid filament fold B variant 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.97 Å
Deposited: 2025-12-03
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tho: Crystal structure of the adduct formed upon reaction of [V(IV)O(acetylacetonate)2] with human serum transferrin with Fe(III) bound at the C-lobe only
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2025-12-03
Authors: Paolillo, M., Ferraro, G., Banneville, A.S., Cornaciu, I., Pica, A., Merlino, A.
PDB entry 9thp: TAF15 amyloid filament fold B variant 3
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.98 Å
Deposited: 2025-12-03
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9thq: Crystal structure of the human serum transferrin with Fe(III) bound at the C-lobe only
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2025-12-03
Authors: Paolillo, M., Ferraro, G., Banneville, A.S., Cornaciu, I., Pica, A., Merlino, A.
PDB entry 9thr: Crystal structure of the human serum transferrin with Fe(III) bound at the C-lobe only (treated with DMSO)
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-12-03
Authors: Paolillo, M., Ferraro, G., Banneville, A.S., Cornaciu, I., Pica, A., Merlino, A.
PDB entry 9ths: Room temperature structure of Ascorbate Peroxidase at 1.54A
Classification: OXIDOREDUCTASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-12-03
Authors: Udiniya, M., Moody, P.
PDB entry 9ti1: Crystal structure of the zinc-containing Phosphotriesterase dPTE2-H55
Classification: HYDROLASE
Source organism: Brevundimonas diminuta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-12-04
Authors: Manser, B.P., Deliz Liang, A.
PDB entry 9ti2: Crystal structure of the zinc-containing Phosphotriesterase dPTE2-H55(pi)MH
Classification: HYDROLASE
Source organism: Brevundimonas diminuta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2025-12-04
Authors: Manser, B.P., Deliz Liang, A.
PDB entry 9ti4: High resolution Cryo-EM structure of human complex I in mitochondria
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-12-04
Authors: Nguyen, M.D., Singh, V., Rorbach, J.
PDB entry 9tjx: Structure of factor VII Gla domain bound to EPCR
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-12-08
Authors: Lopez-Sagaseta, J.
PDB entry 9tke: TAF15 amyloid filament fold H (Y38C)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tkf: TAF15 amyloid filament fold G
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tkg: TAF15 amyloid filament fold F
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tkh: TAF15 amyloid filament fold E variant 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.05 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tki: TAF15 amyloid filament fold E variant 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tkj: TAF15 amyloid filament fold D
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tkk: TAF15 amyloid filament fold C variant 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tkl: TAF15 amyloid filament fold C variant 1 doublet
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tkm: CryoEM structure of coxsackievirus B1 virus-like particle with VP4 deletion
Classification: VIRUS LIKE PARTICLE
Source organism: Coxsackievirus B1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-12-10
Authors: Levanova, A.L., Guryanov, S., Ahmad, K.L.L., Butcher, S.J.
PDB entry 9tkv: Structure of duck RIG-I (delta CARDS) bound to 31-mer RNA mismatched hairpin with 5'pppG-C blunt end, mimicking the influenza B virus vRNA promoter (panhandle).
Classification: RNA BINDING PROTEIN
Source organism: Anas platyrhynchos; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.488 Å
Deposited: 2025-12-10
Authors: Cusack, S., Ivanov, I.
PDB entry 9tkz: TAF15 amyloid filament fold D prime
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tl1: Structure of duck RIG-I (delta CARDs) bound to 31-mer RNA mismatched hairpin with 5'ppA-U blunt end mimicking the influenza B virus vRNA promoter (panhandle) and to ADP.
Classification: RNA BINDING PROTEIN
Source organism: Anas platyrhynchos; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.704 Å
Deposited: 2025-12-10
Authors: Cusack, S., Ivanov, I.
PDB entry 9tl2: TAF15 amyloid filament fold C variant 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-12-10
Authors: Tetter, S., Varghese, N.R., Ryskeldi-Falcon, B.
PDB entry 9tlz: Plasmodium falciparum dihydroorotate dehydrogenase in complex with 3-hydroxy-1-methyl pyrazole derivatives
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2025-12-11
Authors: Alberti, M., Miggiano, R.
PDB entry 9tm1: Crystal structure of bromodomain from Plasmodium falciparum GCN5 complexed with a ligand
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-12-11
Authors: McMillan, J., Postis, V., Masson, G.
PDB entry 9tm2: Plasmodium falciparum dihydroorotate dehydrogenase in complex with 3-hydroxy-1-methyl pyrazole derivatives
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-12-11
Authors: Alberti, M., Miggiano, R.
PDB entry 9tm6: Structure of duck RIG-I (delta CARDs) bound to 31-mer RNA mismatched hairpin with 5'pppG-C blunt end mimicking the influenza A virus vRNA promoter (panhandle) and to ADP.
Classification: RNA BINDING PROTEIN
Source organism: Anas platyrhynchos; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.982 Å
Deposited: 2025-12-12
Authors: Cusack, S., Ivanov, I.
PDB entry 9tme: Structure of Plasmodium falciparum Transketolase in complex with Oxythiamine
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.813 Å
Deposited: 2025-12-12
Authors: Raimi, O.G., Akintola, I.A., Orogun, Y., Babalola, K.I., Soriyan, O.O., Ogunlana, O.O., Ogunjimi, A.A., Vanderpuye, O.A., Fadare, O.A.
PDB entry 9tmp: Crystal Structure of Native Cytochrome b562 in complex with the synthetic anti-BRIL antibody BAG2.
Classification: PROTEIN BINDING
Source organism: Escherichia coli BL21; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-12-15
Authors: Cooper, B.F., Isom, G.L.
PDB entry 9tnr: L12 G-quadruplex-forming aptamer targeting HMGB1 protein
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2025-12-16
Authors: Trajkovski, M., Platella, C., Napolitano, E., Esposito, C.L., Catuogno, S., Musumeci, D., Plavec, J., Montesarchio, D.
PDB entry 9tnz: SP100 CARD filament
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-12-16
Authors: Rabl, J., Aird, E., Corn, J.
PDB entry 9toy: Investigating the binding mechanism of Interferon Regulatory Factor 4 to DNA in the context of Multiple Myeloma
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-12-17
Authors: Alamaniotis, C., Roe, M., Mancini, E.J.
PDB entry 9tp6: Structure of LolA3 from Porphyromonas gingivalis
Classification: TRANSPORT PROTEIN
Source organism: Porphyromonas gingivalis ATCC 33277
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2025-12-17
Authors: Jaiman, D., Persson, K.
PDB entry 9tpe: The structure of the monoclinic crystal form of the type II ribosome inactivating protein from Winter Aconite Eranthis hyemalis.
Classification: TOXIN
Source organism: Eranthis hyemalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-12-17
Authors: Cooper, J.B., Palmer, R.A.
PDB entry 9tpf: The structure of the orthorhombic crystal form of the type II ribosome inactivating protein from Winter Aconite Eranthis hyemalis.
Classification: TOXIN
Source organism: Eranthis hyemalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-12-18
Authors: Cooper, J.B., Palmer, R.A.
PDB entry 9tpg: Crystal structure of Zika Virus NS2B-NS3 protease in complex with compound 1
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2025-12-18
Authors: Ontoria, J.M., Torrente, E.
PDB entry 9tph: Survivin 1-127 in complex with a molecular tweezer-Histone-H3-peptide conjugate
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-12-18
Authors: Vetter, I.R., Bier, D.
PDB entry 9tpi: Survivin 1-122 in complex with a molecular tweezer-Histone-H3-peptide conjugate
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-12-18
Authors: Vetter, I.R., Bier, D.
PDB entry 9tpm: Structure of LolB from Porphyromonas gingivalis
Classification: LIPID BINDING PROTEIN
Source organism: Porphyromonas gingivalis A7A1-28
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-12-18
Authors: Jaiman, D., Persson, K.
PDB entry 9tpt: Structure of recombinantly assembled E83Q alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2025-12-18
Authors: Shafiei, N., Mohammed, I., Kumar, S.T., Mahul Mellier, A.L., Ekundayo, B., Stahli, D., Lewis, A.J., Stahlberg, H.
PDB entry 9tpw: cryo-ET structure of mTOR complex 2 on a PIP2-containing membrane
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2025-12-18
Authors: Hay, I.M., Ahsan, B., Williams, R.L.
PDB entry 9tqb: Octameric C. elegans BORC, containing BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and the shared BORC and BLoC-1 subunits, BLOC1S1, BLOC1S2 and Snapin
Classification: TRANSPORT PROTEIN
Source organism: Caenorhabditis; Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.8 Å
Deposited: 2025-12-19
Authors: Amann, S.J., de Araujo, M.E.G., Grishkovskaya, I., Huber, L.A., Haselbach, D.
PDB entry 9tqc: L. pneumophila 3-methylcrotonyl-CoA carboxylase holoenzyme A3B6
Classification: LIGASE
Source organism: Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-12-19
Authors: Meir, A., Durie, C., Somarathne, R., Shrestha, R., Zehra, M., Brodeur, C., Bhella, D., Lai, W.C.
PDB entry 9tqd: CD163 bound to haemoglobin
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-12-20
Authors: Zhou, R.X., Higgins, M.K.
PDB entry 9tqg: L. pneumophila 3-methylcrotonyl-CoA carboxylase A1B6
Classification: LIGASE
Source organism: Legionella pneumophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-12-22
Authors: Meir, A., Durie, C., Somarathne, R., Shrestha, R., Zehra, M., Brodeur, C., Bhella, D., Lai, W.C.
PDB entry 9trl: RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (beta-barrel)
Classification: DNA BINDING PROTEIN
Source organism: Homo; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-12-25
Authors: Liang, P., Zhang, X.
PDB entry 9trm: RAD51-dsDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-12-25
Authors: Liang, P., Zhang, X.
PDB entry 9tro: Factor VII Gla domain, X-ray structure
Classification: PROTEIN BINDING
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-12-25
Authors: Lopez-Sagaseta, J.
PDB entry 9tu0: Crystal structure of human ERK1 in complex with the KIM1 motif of the T. gondii protein GRA24
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2026-01-08
Authors: Juyoux, P., von Velsen, J., Bowler, M.W.
PDB entry 9tu4: Uracil-DNA glycosylase from Micrococcus flavus
Classification: DNA BINDING PROTEIN
Source organism: Micrococcus flavus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2026-01-08
Authors: Simoes, R.S.M., Teodoro, J.S., Alves, V.D., Fontes, C.M.G.A., Bule, P.
PDB entry 9tvu: Structure of the Chlamydomonas reinhardtii chlororibosome
Classification: RIBOSOME
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2026-01-13
Authors: Waltz, F., Kater, L., Engel, B.D.
PDB entry 9tw9: Legionella monocytogenes SodA wt
Classification: OXIDOREDUCTASE
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2026-01-14
Authors: Mackenzie, E.S., Basle, A., Wldron, K.J.
PDB entry 9twa: Legionella monocytogenes SodA mutant GL to VI
Classification: OXIDOREDUCTASE
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2026-01-14
Authors: Mackenzie, E.S., Basle, A., Wldron, K.J.
PDB entry 9twc: Legionella monocytogenes SodA wt
Classification: OXIDOREDUCTASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2026-01-14
Authors: Mackenzie, E.S., Basle, A., Wldron, K.J.
PDB entry 9tyg: Structure of the MAP2K MEK1 in an inactive conformation in complex with its substrate MAPK ERK2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Toxoplasma gondii ME49
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2026-01-19
Authors: von Velsen, J., Juyoux, P., Bowler, M.W.
PDB entry 9tyh: Structure of the MAP2K MEK1 in an active conformation in complex with its substrate MAPK ERK2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Toxoplasma gondii ME49
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2026-01-19
Authors: von Velsen, J., Juyoux, P., Bowler, M.W.
PDB entry 9tyi: Structure of the MAP2K MEK1 without bound nucleotide in complex with its substrate MAPK ERK2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Toxoplasma gondii ME49
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2026-01-19
Authors: von Velsen, J., Juyoux, P., Bowler, M.W.
PDB entry 9tyy: RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54 N-terminus
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2026-01-21
Authors: Liang, P., Zhang, X.
PDB entry 9tz5: Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
Classification: ANTIBIOTIC
Source organism: Coxiella burnetii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.22 Å
Deposited: 2026-01-22
Authors: Stuart, W.S., Isupov, M.N., Harmer, N.J.
PDB entry 9tz9: Empty 50S Subunit of the Coxiella burnetii Ribosome
Classification: RIBOSOME
Source organism: Coxiella burnetii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2026-01-22
Authors: Stuart, W.S., Isupov, M.N., Harmer, N.J.
PDB entry 9tze: 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
Classification: RIBOSOME
Source organism: Coxiella burnetii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2026-01-22
Authors: Stuart, W.S., Isupov, M.N., Harmer, N.J.
PDB entry 9tzg: X-ray structure of the C-terminal domain (residues 366-485) of S. pombe threonylcarbamoyladenosine dehydratase at 1.55 A resolution
Classification: RNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2026-01-22
Authors: Hirschmann, J., Huber, E.M.
PDB entry 9tzh: X-ray structure of S. cerevisiae threonlycarbamoyladenosine dehydratase 1 (residues 50-429) in complex with AMP at 3.7 A resolution
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2026-01-22
Authors: Hirschmann, J., Huber, E.M.
PDB entry 9tzx: Cryo-EM structure of a tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2026-01-25
Authors: Banerjee, V., Gorski, D., Baker, M., Soto, C.
PDB entry 9u02: Medin fibril generated from the heterotypic interaction of Abeta40 and Medin.
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2026-01-26
Authors: Pradhan, B., Kumar, S.T., Wagner, J., Gallardo, R., Zorzini, V., Orlando, G., Vleeschouwer, M.D., Madine, J., Louros, N., Neher, J., Schymkowitz, J., Rousseau, F.
PDB entry 9u0g: Crystal structure of the apo BRL2 ectodomain from Arabidopsis thaliana (monoclinic crystal form).
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2026-01-27
Authors: Caregnato, A., Hothorn, M.
PDB entry 9u19: Crystal structure of the NKX2.1 homeodomain in complex with a 12-bp DNA duplex containing a CACG motif variant
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2026-01-29
Authors: Malecka, M.Z., Bommer, M., Heinemann, U.
PDB entry 9u2s: PhiC31 integrase-attB-attP synaptic complex: attB-bound dimer subregion
Classification: RECOMBINATION
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2026-01-30
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9u2t: PhiC31 integrase-attB-attP synaptic complex: attP-bound dimer subregion
Classification: RECOMBINATION
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2026-01-30
Authors: Sun, E., Spagnolo, L.
PDB entry 9u2v: Solution NMR ensemble of synthetic xeno peptide P2
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2026-01-30
Authors: Brown, S.M., Kalvoda, T., Krystufek, R., Kormanik, J.M., Makarov, M., Verner, V., Hexnerova, R., Srb, P., Andris, E., Bednarova, L., Pazderkova, M., Lepsik, M., Rezac, J., Konvalinka, J., Veverka, V., Rulisek, L., Freeland, S., Hlouchova, K.
PDB entry 9u32: Plant chloroplast dicarboxylate transporter AtDiT2.1 bound with Glu
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2025-03-17
Authors: Yang, Z., Zhang, P.
PDB entry 9u34: Helical Reconstruction of DENV2 US/BID-V594/2006 tubular particles bound with D14.F25.S02 fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 14.7 Å
Deposited: 2025-03-18
Authors: Chatterjee, A., Prasad, V.M.
PDB entry 9u35: Helical Reconstruction of DENV2 THSTI/TRC/01 tubular particles bound with D14.F25.S02 fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 17.37 Å
Deposited: 2025-03-18
Authors: Chatterjee, A., Prasad, V.M.
PDB entry 9u36: Cryo-EM structure of Dengue virus serotype2 THSTI/TRC/01 strain bound with D14.F25.SO2 fab
Classification: VIRUS
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 19.08 Å
Deposited: 2025-03-18
Authors: Chatterjee, A., Prasad, V.M.
PDB entry 9u37: D14.F25.S02 IgG complexed to DENV2-US/BID/V594/2006 virus
Classification: VIRUS
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.65 Å
Deposited: 2025-03-18
Authors: Chatterjee, A.C., Mangala Prasad, V.
PDB entry 9u38: D14.F25.S02 Fab complexed to DENV2-US/BID/V594/2006 virus-3f-2f Fab map
Classification: VIRUS
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.48 Å
Deposited: 2025-03-18
Authors: Chatterjee, A.C., Mangala Prasad, V.
PDB entry 9u39: Crystal structure of Serine Acetyltransferase (SAT) from Planctomyces limnophilus in complex with its substrate serine
Classification: TRANSFERASE
Source organism: Planctopirus limnophila DSM 3776
Experimental method: X-RAY DIFFRACTION
Resolution: 2.218 Å
Deposited: 2025-03-18
Authors: Kumar, N., Kumaran, S.
PDB entry 9u3a: Glycogen phosphorylase from Segatella copri in complex with AMP
Classification: STRUCTURAL PROTEIN
Source organism: Segatella copri
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-03-18
Authors: Shobu, K., Fukuda, Y., Inoue, T.
PDB entry 9u3b: Monomeric sarcosine oxidase from Bacillus sp. (SoxB) complexed with L-Thioproline
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. B-0618
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-03-18
Authors: Zhang, Y., Nakajima, Y., Kurobe, M., Nakamura, T., Himiyama, T., Nishiya, Y.
PDB entry 9u3c: Monomeric sarcosine oxidase from Bacillus sp. (SoxB) complexed with L-Proline
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. B-0618
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-03-18
Authors: Zhang, Y., Nakajima, Y., Kurobe, M., Nakamura, T., Himiyama, T., Nishiya, Y.
PDB entry 9u3d: Monomeric sarcosine oxidase from Bacillus sp. (SoxB) complexed with D-Proline
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. B-0618
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-03-18
Authors: Zhang, Y., Nakajima, Y., Kurobe, M., Nakamura, T., Himiyama, T., Nishiya, Y.
PDB entry 9u3e: Monomeric sarcosine oxidase from Bacillus sp. (SoxB) Y254A mutant
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. B-0618
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-03-18
Authors: Zhang, Y., Nakajima, Y., Kurobe, M., Nakamura, T., Himiyama, T., Nishiya, Y.
PDB entry 9u3f: Monomeric sarcosine oxidase from Bacillus sp. (SoxB) Y254G mutant
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. B-0618
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-03-18
Authors: Zhang, Y., Nakajima, Y., Kurobe, M., Nakamura, T., Himiyama, T., Nishiya, Y.
PDB entry 9u3h: Serine Beta-lactamase OXA-48 in complex with dual MBL/SBL inhibitor FB1-12
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.181 Å
Deposited: 2025-03-18
Authors: Li, G.-B., Liang, G.-Q.
PDB entry 9u3i: Crystal structure of a phenylalanine-modifi ed thrombin-binding DNA aptamer
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-03-18
Authors: Park, S., Kanazawa, H., Kondo, J.
PDB entry 9u3k: Glycogen phosphorylase from Segatella copri pentamer in complex with AMP chains D and E
Classification: STRUCTURAL PROTEIN
Source organism: Segatella copri
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-03-18
Authors: Shobu, K., Fukuda, Y., Inoue, T.
PDB entry 9u3l: Substrate-engaged human 26S proteasome bound to midnolin with RPT2 at top of spiral staircase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-03-18
Authors: Zhu, C., Qin, L., Liang, L.
PDB entry 9u3n: Crystal structure of FGFR2 kinase domain gatekeeper mutant V564F in complex with compound LC-F2-01
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2025-03-18
Authors: Chen, L.
PDB entry 9u3o: Crystal structure of Chi430 mutant E176A in the substrate complex
Classification: HYDROLASE
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-03-18
Authors: Qipeng, C., Jinghan, Z.
PDB entry 9u3p: Cryo-EM structure of human AC9-Gs complex (soluble domain)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-03-18
Authors: Suzuki, S., Nomura, R., Suzuki, H., Nishikawa, K., Fujiyoshi, Y.
PDB entry 9u3q: Cryo-EM structure of human AC9-Gs complex (TM domain)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-03-18
Authors: Suzuki, S., Nomura, R., Suzuki, H., Nishikawa, K., Fujiyoshi, Y.
PDB entry 9u3r: Cryo-EM structure of human AC9
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-03-18
Authors: Suzuki, S., Nomura, R., Suzuki, H., Nishikawa, K., Fujiyoshi, Y.
PDB entry 9u3s: Cryo-EM structure of human AC9 (TM domain)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-18
Authors: Suzuki, S., Nomura, R., Suzuki, H., Nishikawa, K., Fujiyoshi, Y.
PDB entry 9u3u: Cryo-EM structure of human AC9_delC
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-03-18
Authors: Suzuki, S., Nomura, R., Suzuki, H., Nishikawa, K., Fujiyoshi, Y.
PDB entry 9u3v: Cryo-EM structure of human AC9_delC (TM domain)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-18
Authors: Suzuki, S., Nomura, R., Suzuki, H., Nishikawa, K., Fujiyoshi, Y.