LiteFold/PDB huggingface dataset:
PDB entry 5b3l: C101S mutant of Flavodoxin from Pseudomonas aeruginosa
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-03-04
Authors: Okada, D., Nakanishi, T., Kitamura, M.
PDB entry 5b3n: The crystal structure of anti-H4K20me1_scFv, 15F11
Classification: IMMUNE SYSTEM
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2016-03-04
Authors: Kujirai, T., Horikoshi, N., Kurumizaka, H.
PDB entry 5b3p: Nqo5 of the trypsin-resistant fragment (1-134) in P212121 form
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.652 Å
Deposited: 2016-03-09
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 5b3q: Nqo5 of the trypsin-resistant fragment (1-134) in P63 form
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.003 Å
Deposited: 2016-03-09
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 5b3r: Crystal structure of metallo-beta-lactamase IMP-18 from Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-03-10
Authors: Shimizu-Ibuka, A., Ishii, Y.
PDB entry 5b3s: Bovine heart cytochrome c oxidase in the carbon monoxide-bound mixed-valence state at 1.68 angstrom resolution (50 K)
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2016-03-11
Authors: Shimada, A., Shinzawa-Ito, K., Yoshikawa, S., Tsukihara, T.
PDB entry 5b3t: Crystal structure of apo-form biliverdin reductase from Synechocystis sp. PCC 6803
Classification: TRANSFERASE
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2016-03-12
Authors: Takao, H., Wada, K.
PDB entry 5b3u: Crystal structure of biliverdin reductase in complex with NADP+ from Synechocystis sp. PCC 6803
Classification: TRANSFERASE
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.698 Å
Deposited: 2016-03-13
Authors: Takao, H., Wada, K.
PDB entry 5b3v: Crystal structure of biliverdin reductase in complex with biliverdin and NADP+ from Synechocystis sp. PCC 6803
Classification: TRANSFERASE
Source organism: Synechocystis sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.594 Å
Deposited: 2016-03-13
Authors: Takao, H., Wada, K.
PDB entry 5b3w: Crystal structure of hPin1 WW domain (5-15) fused with maltose-binding protein in C2221 form
Classification: ISOMERASE,SUGAR BINDING PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-03-17
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 5b3x: Crystal structure of hPin1 WW domain (5-15) fused with maltose-binding protein in P41212 form
Classification: ISOMERASE,SUGAR BINDING PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-03-17
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 5b3y: Crystal structure of hPin1 WW domain (5-23) fused with maltose-binding protein
Classification: ISOMERASE,SUGAR BINDING PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2016-03-17
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 5b3z: Crystal structure of hPin1 WW domain (5-39) fused with maltose-binding protein
Classification: ISOMERASE,SUGAR BINDING PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-03-17
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 5b40: The nucleosome structure containing H2B-K120 and H4-K31 monoubiquitinations
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.33 Å
Deposited: 2016-03-22
Authors: Machida, S., Sekine, S., Nishiyama, Y., Horikoshi, N., Kurumizaka, H.
PDB entry 5b41: Crystal structure of VDR-LBD complexed with 2-methylidene-19-nor-1a,25-dihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2016-03-23
Authors: Anami, Y., Itoh, T., Yamamoto, K.
PDB entry 5b42: Crystal structure of the C-terminal endonuclease domain of Aquifex aeolicus MutL.
Classification: DNA BINDING PROTEIN
Source organism: Aquifex aeolicus (strain VF5)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2016-03-30
Authors: Fukui, K., Baba, S., Kumasaka, T., Yano, T.
PDB entry 5b43: Crystal structure of Acidaminococcus sp. Cpf1 in complex with crRNA and target DNA
Classification: HYDROLASE/RNA/DNA
Source organism: Acidaminococcus sp. BV3L6; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2016-03-30
Authors: Yamano, T., Nishimasu, H., Hirano, H., Nakane, T., Ishitani, R., Nureki, O.
PDB entry 5b46: 2-Oxoacid:Ferredoxin Oxidoreductase 2 from Sulfolobus tokodai - ligand free form
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii str. 7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-04-01
Authors: Yan, Z., Maruyama, A., Arakawa, T., Fushinobu, S., Wakagi, T.
PDB entry 5b47: 2-Oxoacid:Ferredoxin Oxidoreductase 2 from Sulfolobus tokodai - pyruvate complex
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii str. 7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-04-01
Authors: Yan, Z., Maruyama, A., Arakawa, T., Fushinobu, S., Wakagi, T.
PDB entry 5b48: 2-Oxoacid:Ferredoxin Oxidoreductase 1 from Sulfolobus tokodai
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii str. 7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2016-04-01
Authors: Yan, Z., Maruyama, A., Arakawa, T., Fushinobu, S., Wakagi, T.
PDB entry 5b49: Crystal structure of LpxH with manganese from Pseudomonas aeruginosa
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2016-04-03
Authors: Okada, C., Wakabayashi, H., Yao, M., Tanaka, I.
PDB entry 5b4a: Crystal structure of LpxH with lipid X in spacegroup P21
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2016-04-03
Authors: Okada, C., Wakabayashi, H., Yao, M., Tanaka, I.
PDB entry 5b4b: Crystal structure of LpxH with lipid X in spacegroup C2
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-04-03
Authors: Okada, C., Wakabayashi, H., Yao, M., Tanaka, I.
PDB entry 5b4c: Crystal structure of H10N mutant of LpxH with manganese
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2016-04-03
Authors: Okada, C., Wakabayashi, H., Yao, M., Tanaka, I.
PDB entry 5b4d: Crystal structure of H10N mutant of LpxH
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2016-04-03
Authors: Okada, C., Wakabayashi, H., Yao, M., Tanaka, I.
PDB entry 5b4e: Sulfur Transferase TtuA in complex with iron sulfur cluster and ATP derivative
Classification: TRANSFERASE
Source organism: Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.698 Å
Deposited: 2016-04-03
Authors: Chen, M., Narai, S., Tanaka, Y., Yao, M.
PDB entry 5b4f: Sulfur Transferase TtuA in complex with iron sulfur cluster
Classification: TRANSFERASE
Source organism: Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2016-04-03
Authors: Chen, M., Narai, S., Tanaka, Y., Yao, M.
PDB entry 5b4h: Crystal structure of I86D mutant of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin (data 1)
Classification: OXIDOREDUCTASE
Source organism: Synechocystis sp. PCC 6803
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2016-04-04
Authors: Hagiwara, Y., Wada, K., Irikawa, T., Unno, M., Fukuyama, K., Sugishima, M.
PDB entry 5b4i: Crystal structure of I86D mutant of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin (data 2)
Classification: OXIDOREDUCTASE
Source organism: Synechocystis sp. PCC 6803
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2016-04-04
Authors: Hagiwara, Y., Wada, K., Irikawa, T., Unno, M., Fukuyama, K., Sugishima, M.
PDB entry 5b4j: Crystal structure of I86D mutant of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin (data 3)
Classification: OXIDOREDUCTASE
Source organism: Synechocystis sp. PCC 6803
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2016-04-04
Authors: Hagiwara, Y., Wada, K., Irikawa, T., Unno, M., Fukuyama, K., Sugishima, M.
PDB entry 5b4k: Crystal structure of the catalytic domain of human PDE10A complexed with N-(4-((5-methyl-5H-pyrrolo[3,2-d]pyrimidin-4-yl)oxy)phenyl)-1H-benzimidazol-2-amine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2016-04-05
Authors: Oki, H., Zama, Y.
PDB entry 5b4l: Crystal structure of the catalytic domain of human PDE10A complexed with 1-(cyclopropylmethyl)-5-(2-(2,3-dihydro-1H-imidazo[1,2-a]benzimidazol-1-yl)ethoxy)-3-(1-phenyl-1H-pyrazol-5-yl)pyridazin-4(1H)-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-04-05
Authors: Oki, H., Zama, Y.
PDB entry 5b4m: Crystal structure of an Fab against human influenza A
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-04-05
Authors: Yuan, Y.A.
PDB entry 5b4n: Structure analysis of function associated loop mutant of substrate recognition domain of Fbs1 ubiquitin ligase
Classification: LIGASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-04-06
Authors: Nishio, K., Yoshida, Y., Tanaka, K., Mizushima, T.
PDB entry 5b4o: Crystal structure of Macrophage Migration Inhibitory Factor in complex with BTZO-14
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2016-04-07
Authors: Oki, H., Igaki, S., Moriya, Y., Hayano, Y., Habuka, N.
PDB entry 5b4p: Complex structure of human C5a and its binding repebody
Classification: SIGNALING PROTEIN/MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-04-12
Authors: Kim, H.-S., Choi, J.M., Hwang, D.E.
PDB entry 5b4s: Crystal Structure of GH80 chitosanase from Mitsuaria chitosanitabida
Classification: HYDROLASE
Source organism: Mitsuaria chitosanitabida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2016-04-19
Authors: Kumasaka, T., Yorinaga, Y., Yamamoto, M., Hamada, K., Kawamukai, M.
PDB entry 5b4t: Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and a substrate D-3-hydroxybutyrate
Classification: OXIDOREDUCTASE
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2016-04-19
Authors: Kanazawa, H., Tsunoda, M., Hoque, M.M., Suzuki, K., Yamamoto, T., Takenaka, A.
PDB entry 5b4u: Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and an inhibitor malonate
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2016-04-19
Authors: Kanazawa, H., Tsunoda, M., Hoque, M.M., Suzuki, K., Yamamoto, T., Takenaka, A.
PDB entry 5b4v: Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and an inhibitor methylmalonate
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2016-04-19
Authors: Kanazawa, H., Tsunoda, M., Hoque, M.M., Suzuki, K., Yamamoto, T., Takenaka, A.
PDB entry 5b4w: Crystal structure of Plexin inhibitor complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2016-04-19
Authors: Matsunaga, Y., Kitago, Y., Arimori, T., Takagi, J.
PDB entry 5b4x: Crystal structure of the ApoER2 ectodomain in complex with the Reelin R56 fragment
Classification: SIGNALING PROTEIN/ENDOCYTOSIS
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2016-04-20
Authors: Yasui, N., Hirai, H., Yamashita, K., Takagi, J., Nogi, T.
PDB entry 5b4y: Crystal structure of the LA12 fragment of ApoER2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-04-20
Authors: Nogi, T., Tabata, S., Hirai, H., Yasui, N., Takagi, J.
PDB entry 5b4z: Crystal structure of heme binding protein HmuT H141A mutant
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2016-04-20
Authors: Muraki, N., Aono, S.
PDB entry 5b50: Crystal structure of heme binding protein HmuT Y240A
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2016-04-20
Authors: Muraki, N., Aono, S.
PDB entry 5b51: Crystal structure of heme binding protein HmuT R242A mutant
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2016-04-20
Authors: Muraki, N., Aono, S.
PDB entry 5b52: Crystal structure of the N-terminal domain of H-NS family protein TurB
Classification: TRANSCRIPTION
Source organism: Pseudomonas putida (strain KT2440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-04-21
Authors: Suzuki-Minakuchi, C., Nojiri, H.
PDB entry 5b53: Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) from Fusobacterium nucleatum
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2016-04-22
Authors: Kezuka, Y., Yoshida, Y., Nonaka, T.
PDB entry 5b55: Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) D232N mutant in complexed with alpha-aminoacrylate intermediate: lysine-dimethylated form
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum subsp. nucleatum strain ATCC 25586
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2016-04-22
Authors: Kezuka, Y., Yoshida, Y., Nonaka, T.
PDB entry 5b56: Crystal structure of HIV-1 VPR C-Terminal domain and DIBB-M-Importin-Alpha2 complex
Classification: PROTEIN TRANSPORT/VIRAL PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-04-25
Authors: Miyatake, H., Sanjoh, A., Matusda, G., Murakami, T., Murakami, H., Hagiwara, K., Yokoyama, M., Sato, H., Miyamoto, Y., Dohmae, N., Aida, Y.
PDB entry 5b57: Inward-facing conformation of ABC heme importer BhuUV from Burkholderia cenocepacia
Classification: METAL TRANSPORT
Source organism: Burkholderia cenocepacia J2315
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2016-04-25
Authors: Naoe, Y., Nakamura, N., Doi, A., Shiro, Y., Sugimoto, H.
PDB entry 5b58: Inward-facing conformation of ABC heme importer BhuUV in complex with periplasmic heme binding protein BhuT from Burkholderia cenocepacia
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia cenocepacia J2315
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2016-04-25
Authors: Naoe, Y., Nakamura, N., Doi, A., Shiro, Y., Sugimoto, H.
PDB entry 5b59: Hen egg-white lysozyme modified with a keto-ABNO.
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-04-28
Authors: Sasaki, D., Seki, Y., Sohma, Y., Oisaki, K., Kanai, M.
PDB entry 5b5b: Crystal structure of VDR-LBD complexed with 2-methylidene-26,27-diphenyl-19-nor-1,25-dihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-05-02
Authors: Kato, A., Itoh, T., Yamamoto, K.
PDB entry 5b5e: Crystal structure analysis of Photosystem II complex
Classification: ELECTRON TRANSPORT, PHOTOSYNTHESIS
Source organism: Thermosynechococcus vulcanus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2016-05-02
Authors: Tanaka, A., Fukushima, Y., Kamiya, N.
PDB entry 5b5f: Crystal structure of ALiS3-Streptavidin complex
Classification: BIOTIN-BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2016-05-04
Authors: Sugiyama, S., Terai, T., Kakinouchi, K., Fujikake, R., Nagano, T., Urano, Y.
PDB entry 5b5g: Crystal structure of ALiS4-Streptavidin complex
Classification: BIOTIN-BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2016-05-04
Authors: Sugiyama, S., Terai, T., Kakinouchi, K., Fujikake, R., Nagano, T., Urano, Y.
PDB entry 5b5h: Hydrophobic ice-binding site confer hyperactivity on antifreeze protein from a snow mold fungus
Classification: ANTIFREEZE PROTEIN
Source organism: Typhula ishikariensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2016-05-06
Authors: Cheng, J., Hanada, Y., Miura, A., Tsuda, S., Kondo, H.
PDB entry 5b5i: The crystal structure of a crustacean hyperglycemic hormone precursor from the kuruma prawn
Classification: HORMONE
Source organism: Marsupenaeus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.599 Å
Deposited: 2016-05-10
Authors: Tsutsui, N., Nagata, K.
PDB entry 5b5j: Hen egg white lysozyme with boron tracedrug UTX-97
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2016-05-11
Authors: Morimoto, Y.
PDB entry 5b5k: Crystal structure of Izumo1, the mammalian sperm ligand for egg Juno
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2016-05-11
Authors: Nishimura, K., Han, L., De Sanctis, D., Jovine, L.
PDB entry 5b5l: Crystal structure of acetyl esterase mutant S10A with acetate ion
Classification: HYDROLASE
Source organism: Talaromyces cellulolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2016-05-12
Authors: Uechi, K., Kamachi, S., Akita, H., Mine, S., Watanabe, M.
PDB entry 5b5m: Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum
Classification: PHOTOSYNTHESIS
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2016-05-12
Authors: Wang-Otomo, Z.-Y., Yu, L.-J.
PDB entry 5b5n: Crystal structure of the Ba-substituted LH1-RC complex from Tch. tepidum
Classification: PHOTOSYNTHESIS
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2016-05-12
Authors: Wang-Otomo, Z.-Y., Yu, L.-J.
PDB entry 5b5o: Crystal structure of the catalytic domain of MMP-13 complexed with N-phenyl-4-((4H-1,2,4-triazol-3-ylsulfanyl)methyl)-1,3-thiazol-2-amine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2016-05-13
Authors: Oki, H., Tanaka, Y.
PDB entry 5b5p: Crystal structure of the catalytic domain of MMP-13 complexed with 4-oxo-N-(3-(2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy)benzyl)-3,4-dihydroquinazoline-2-carboxamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-05-13
Authors: Oki, H., Tanaka, Y.
PDB entry 5b5q: 1.7 Angstroms structure of ChlaDub1 from Chlamydia Trachomatis
Classification: HYDROLASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-05-13
Authors: Ramirez, Y.A., Kisker, C., Sauer, F.
PDB entry 5b5r: Crystal structure of GSDMA3
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.902 Å
Deposited: 2016-05-14
Authors: Ding, J., Shao, F.
PDB entry 5b5s: Crystal structure of a carbohydrate esterase family 3 from Talaromyces cellulolyticus
Classification: HYDROLASE
Source organism: Talaromyces cellulolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2016-05-16
Authors: Watanabe, M., Ishikawa, K.
PDB entry 5b5t: Crystal Structure of Escherichia coli Gamma-Glutamyltranspeptidase in Complex with peptidyl phosphonate inhibitor 1b
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-05-18
Authors: Wada, K., Fukuyama, K.
PDB entry 5b5u: Crystal structure of truncated Pyrococcus furiosus L-asparaginase with peptide
Classification: HYDROLASE
Source organism: Pyrococcus furiosus DSM 3638; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2016-05-23
Authors: Sharma, P., Tomar, R., Nath, S.K., Kundu, B., Ashish, F.
PDB entry 5b5v: Structure of full-length MOB1b
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.193 Å
Deposited: 2016-05-24
Authors: KIM, S.-Y., Tachioka, Y., Mori, T., Hakoshima, T.
PDB entry 5b5w: Crystal structure of MOB1-LATS1 NTR domain complex
Classification: METAL BINDING PROTEIN/APOTOSIS
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.957 Å
Deposited: 2016-05-24
Authors: KIM, S.-Y., Tachioka, Y., Mori, T., Hakoshima, T.
PDB entry 5b5x: Crystal structure of limiting CO2-inducible protein LCIC
Classification: METAL BINDING PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.511 Å
Deposited: 2016-05-24
Authors: Jin, S., Sun, J., Wunder, T., Tang, D., Mueller-Cajar, O.M., Gao, Y.
PDB entry 5b5y: Crystal structure of PtLCIB4, a homolog of the limiting CO2-inducible protein LCIB
Classification: METAL BINDING PROTEIN
Source organism: Phaeodactylum tricornutum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2016-05-24
Authors: Jin, S., Sun, J., Wunder, T., Tang, D., Mueller-Cajar, O.M., Gao, Y.
PDB entry 5b5z: Crystal structure of PtLCIB4 H88A mutant, a homolog of the limiting CO2-inducible protein LCIB
Classification: METAL BINDING PROTEIN
Source organism: Phaeodactylum tricornutum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-05-24
Authors: Jin, S., Sun, J., Wunder, T., Tang, D., Mueller-Caja, O.M., Gao, Y.
PDB entry 5b60: Crystal structure of PtLCIB4 S47R mutant, a homolog of the limiting CO2-inducible protein LCIB
Classification: METAL BINDING PROTEIN
Source organism: Phaeodactylum tricornutum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-05-24
Authors: Jin, S., Sun, J., Wunder, T., Tang, D., Mueller-Caja, O.M., Gao, Y.
PDB entry 5b61: Extra-superfolder GFP
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 3.115 Å
Deposited: 2016-05-24
Authors: Park, H.H., Jang, T.-H., Choi, J.Y.
PDB entry 5b62: Crystal structure of N-terminal amidase with Asn-Glu-Ala peptide
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae (strain CEN.PK113-7D); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.042 Å
Deposited: 2016-05-24
Authors: Kim, M.K., Oh, S.-J., Lee, B.-G., Song, H.K.
PDB entry 5b63: Crystal structures of E.coli arginyl-tRNA synthetase (ArgRS) in complex with substrate tRNA(Arg)
Classification: LIGASE
Source organism: Escherichia coli (strain K12); Geobacillus stearothermophilus 10
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2016-05-24
Authors: Zhou, M., Ye, S., Stephen, P., Zhang, R., Wang, E.D., Giege, R., Lin, S.X.
PDB entry 5b64: A novel binding mode of MAGUK GK domain revealed by DLG GK domain in complex with KIF13B MBS domain
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus; Rattus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2016-05-24
Authors: Shang, Y., Zhu, J., Zhang, M.
PDB entry 5b66: Crystal structure analysis of Photosystem II complex
Classification: ELECTRON TRANSPORT, PHOTOSYNTHESIS
Source organism: Thermosynechococcus vulcanus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2016-05-25
Authors: Tanaka, A., Fukushima, Y., Kamiya, N.
PDB entry 5b68: Crystal structure of apo amylomaltase from Corynebacterium glutamicum
Classification: TRANSFERASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-05-25
Authors: Joo, S., Kim, S., Kim, K.-J.
PDB entry 5b6a: Structure of Pyridoxal Kinasefrom Pseudomonas Aeruginosa
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-05-25
Authors: Kim, M.I., Hong, M.
PDB entry 5b6b: Complex of LATS1 and phosphomimetic MOB1b
Classification: METAL BINDING PROTEIN/SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.536 Å
Deposited: 2016-05-26
Authors: KIM, S.-Y., Tachioka, Y., Mori, T., Hakoshima, T.
PDB entry 5b6c: Structural Details of Ufd1 binding to p97
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2016-05-26
Authors: Le, L.T.M., Yang, J.K.
PDB entry 5b6d: Crystal Structure of cytidine monophosphate hydroxymethylase MilA with CMP
Classification: TRANSFERASE
Source organism: Streptomyces rimofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2016-05-26
Authors: Gong, Z., Wu, G., He, X.
PDB entry 5b6e: Crystal Structure of cytidine monophosphate hydroxymethylase MilA with hmCMP
Classification: TRANSFERASE
Source organism: Streptomyces rimofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-05-26
Authors: Gong, Z., Wu, G., He, X.
PDB entry 5b6f: Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-05-27
Authors: Sugahara, M., Ago, H., Saino, H., Miyano, M.
PDB entry 5b6g: Protein-protein interaction
Classification: PROTEIN BINDING/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2016-05-27
Authors: Zhao, Y., Jiang, H., Yang, X., Jiang, F., Song, K., Zhang, J.
PDB entry 5b6h: Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP.
Classification: TRANSFERASE
Source organism: Yersinia pseudotuberculosis serotype I (strain IP32953)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-05-27
Authors: Pavithra, G.C., Ramagopal, U.A.
PDB entry 5b6i: Structure of fluorinase from Streptomyces sp. MA37
Classification: TRANSFERASE
Source organism: Streptomyces sp. MA37
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2016-05-29
Authors: Xue, B., Robinson, R.C.
PDB entry 5b6j: Crystal structure of Peptidyl-tRNA hydrolase mutant -H24N from Vibrio cholerae
Classification: HYDROLASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2016-05-30
Authors: Shahid, S., Kabra, A., Pal, R.K., Arora, A.
PDB entry 5b6k: Crystal structure of Ketoreductase 1 from Candida glabrata
Classification: OXIDOREDUCTASE
Source organism: Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.701 Å
Deposited: 2016-05-30
Authors: Qin, B., Mori, T., Abe, I., You, S.
PDB entry 5b6l: Structure of Deg protease HhoA from Synechocystis sp. PCC 6803
Classification: HYDROLASE
Source organism: Escherichia coli BL21(DE3); Synechocystis sp. PCC 6803 substr. Kazusa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.801 Å
Deposited: 2016-05-30
Authors: Dong, W., Wang, J., Liu, L.
PDB entry 5b6m: Crystal structure of human peroxiredoxin 6 in reduced state
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.496 Å
Deposited: 2016-05-30
Authors: Kim, K.H., Lee, W.T., Kim, E.E.
PDB entry 5b6n: Crystal structures of human peroxiredoxin 6 in sulfinic acid state
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.895 Å
Deposited: 2016-05-30
Authors: Kim, K.H., Lee, W.T., Kim, E.E.
PDB entry 5b6o: Crystal structure of MS8104
Classification: HYDROLASE
Source organism: Human SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.202 Å
Deposited: 2016-05-31
Authors: Wang, H., Kim, Y., Muramatsu, T., Takemoto, C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 5b6p: Structure of the dodecameric type-II dehydrogenate dehydratase from Acinetobacter baumannii at 2.00 A resolution
Classification: LYASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-05-31
Authors: Kumar, M., Iqbal, N., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5b6q: Crystal structure of monomeric cytochrome c5 from Shewanella violacea
Classification: ELECTRON TRANSPORT
Source organism: Shewanella violacea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2016-06-01
Authors: Masanari, M., Fujii, S., Kawahara, K., Oki, H., Tsujino, H., Maruno, T., Kobayashi, Y., Ohkubo, T., Nishiyama, M., Harada, Y., Wakai, S., Sambongi, Y.
PDB entry 5b6s: Catalytic domain of Coprinopsis cinerea GH62 alpha-L-arabinofuranosidase
Classification: HYDROLASE
Source organism: Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-06-01
Authors: Tonozuka, T.
PDB entry 5b6t: Catalytic domain of Coprinopsis cinerea GH62 alpha-L-arabinofuranosidase complexed with Pb
Classification: HYDROLASE
Source organism: Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2016-06-01
Authors: Tonozuka, T.
PDB entry 5b6v: A three dimensional movie of structural changes in bacteriorhodopsin: resting state structure
Classification: PROTON TRANSPORT
Source organism: Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-06-02
Authors: Nango, E., Royant, A., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.
PDB entry 5b6w: A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 16 ns after photoexcitation
Classification: PROTON TRANSPORT
Source organism: Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-06-02
Authors: Royant, A., Nango, E., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.
PDB entry 5b6x: A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 760 ns after photoexcitation
Classification: PROTON TRANSPORT
Source organism: Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-06-02
Authors: Royant, A., Nango, E., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.
PDB entry 5b6y: A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 36.2 us after photoexcitation
Classification: PROTON TRANSPORT
Source organism: Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-06-02
Authors: Royant, A., Nango, E., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.
PDB entry 5b6z: A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 1.725 ms us after photoexcitation
Classification: PROTON TRANSPORT
Source organism: Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-06-02
Authors: Royant, A., Nango, E., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.
PDB entry 5b70: OxyR2 E204G regulatory domain from Vibrio vulnificus
Classification: TRANSCRIPTION
Source organism: Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-06-02
Authors: Jo, I., Ha, N.-C.
PDB entry 5b71: Crystal structure of complement C5 in complex with SKY59
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2016-06-03
Authors: Irie, M., Shimizu, Y., Sampei, Z., Fukuzawa, T.
PDB entry 5b72: Crystal structure of bovine lactoperoxidase with a broken covalent bond between Glu258 and heme moiety at 1.98 A resolution.
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2016-06-03
Authors: Singh, P.K., Sirohi, H.V., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5b73: Crystal structure of human ZMYND8 PHD-Bromo-PWWP domain
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-06-03
Authors: Li, H., Li, Y., Zheng, X.
PDB entry 5b74: Crystal structure of conjoined Pyrococcus furiosus L-asparaginase with peptide
Classification: HYDROLASE
Source organism: Pyrococcus furiosus DSM 3638; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.039 Å
Deposited: 2016-06-05
Authors: Sharma, P., Tomar, R., Nath, S.K., Kundu, B., Ashish, F.
PDB entry 5b75: Crystal structure of MOZ double PHD finger in complex with histone H3 butyrylation at K14
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.704 Å
Deposited: 2016-06-05
Authors: Li, H., Xiong, X.
PDB entry 5b76: Crystal structure of MOZ double PHD finger domain in complex with histone H3 crotonylation at K14
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.653 Å
Deposited: 2016-06-05
Authors: Li, H., Xiong, X.
PDB entry 5b77: Crystal structrue of MOZ double PHD finger in complex with histone H3 propionylation at K14
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.551 Å
Deposited: 2016-06-05
Authors: Li, H., Xiong, X.
PDB entry 5b78: Crystal structure of MOZ double PHD finger mutant-S210D/N235R in complex with histone H3 crotonylation at K14
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2016-06-05
Authors: Li, H., Xiong, X.
PDB entry 5b79: Crystal structure of DPF2 double PHD finger
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2016-06-05
Authors: Li, H., Xiong, X.
PDB entry 5b7a: SOLUTION STRUCTURE OF LYS37 ACETYLATED HUMAN SUMO1
Classification: STRUCTURAL GENOMICS
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2016-06-05
Authors: Naik, M.T., Naik, N., Shih, H., Huang, T.
PDB entry 5b7b: Crystal structure of Nucleoprotein-nucleozin complex
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Wilson-Smith/1933(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2016-06-06
Authors: Pang, B., Zhang, W.Z., Zhang, H.M., Hao, Q.
PDB entry 5b7c: Crystal structure of octopus S-crystallin Q108F mutant in complex with glutathione
Classification: STRUCTURAL PROTEIN
Source organism: Octopus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2016-06-07
Authors: Chou, C.-Y., Tan, W.-H., Wu, C.-G.
PDB entry 5b7d: OxyR2 E204G mutant regulatory domain from Vibrio vulnificus (sulfate-bound)
Classification: TRANSCRIPTION
Source organism: Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2016-06-07
Authors: Jo, I., Ha, N.-C.
PDB entry 5b7e: Structure of perdeuterated CueO
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2016-06-07
Authors: Akter, M., Higuchi, Y., Shibata, N.
PDB entry 5b7f: Structure of CueO - the signal peptide was truncated by HRV3C protease
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2016-06-07
Authors: Akter, M., Higuchi, Y., Shibata, N.
PDB entry 5b7g: Structures and functional analysis of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
Classification: HYDROLASE
Source organism: Aeromonas hydrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.399 Å
Deposited: 2016-06-07
Authors: Xu, Y.
PDB entry 5b7h: OxyR2 regulatory domain C206S mutant from Vibrio vulnificus
Classification: TRANSCRIPTION
Source organism: Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.492 Å
Deposited: 2016-06-07
Authors: Jo, I., Ha, N.-C.
PDB entry 5b7i: Cas3-AcrF3 complex
Classification: HYDROLASE/UNKNOWN FUNCTION
Source organism: Pseudomonas aeruginosa (strain UCBPP-PA14); Pseudomonas phage JBD5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2016-06-07
Authors: Wang, X., Zhu, Y.
PDB entry 5b7j: Structure model of Sap1-DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843); SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2016-06-07
Authors: Jin, C., Hu, Y., Ding, J., Zhang, Y.
PDB entry 5b7m: Structure of perdeuterated CueO - the signal peptide was truncated by HRV3C protease
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-06-07
Authors: Akter, M., Higuchi, Y., Shibata, N.
PDB entry 5b7n: Crystal structure of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
Classification: HYDROLASE
Source organism: Aeromonas hydrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.399 Å
Deposited: 2016-06-08
Authors: Xu, Y.
PDB entry 5b7p: Structures and functional analysis of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
Classification: HYDROLASE
Source organism: Aeromonas hydrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2016-06-08
Authors: Xu, Y.
PDB entry 5b7q: Structures and functional analysis of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
Classification: HYDROLASE
Source organism: Aeromonas hydrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.493 Å
Deposited: 2016-06-08
Authors: Xu, Y.
PDB entry 5b7s: Apo structure of Cysteine Desulfurase from Thermococcus onnurineus NA1
Classification: TRANSFERASE
Source organism: Thermococcus onnurineus (strain NA1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2016-06-08
Authors: Ho, T.-H., Kang, L.W.
PDB entry 5b7u: Apo Structure of Cysteine Desulfurase from Thermococcus onnurineus NA1 at 1.89A
Classification: TRANSFERASE
Source organism: Thermococcus onnurineus (strain NA1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-06-09
Authors: Ho, T.-H., Kang, L.-W.
PDB entry 5b7v: Human FGFR1 kinase in complex with CH5183284
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2016-06-09
Authors: Fukami, T.A., Lukacs, C.M., Janson, C.
PDB entry 5b7w: Crystal structure of the YajQ-family protein XC_3703 from Xanthomonas campestris pv.campestris
Classification: UNKNOWN FUNCTION
Source organism: Xanthomonas campestris pv. campestris (strain 8004)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2016-06-10
Authors: Zhao, Z., Wu, Z.
PDB entry 5b7x: NMR Solution structure of an EF-hand Calcium binding protein (EhCaBP6) from Entamoeba Histolytica
Classification: METAL BINDING PROTEIN
Source organism: Entamoeba histolytica HM-3:IMSS
Experimental method: SOLUTION NMR
Deposited: 2016-06-10
Authors: Verma, D., Chary, K.V.
PDB entry 5b7y: Crystal Structure of Hyperthermophilic Thermotoga maritima L-Ketose-3-Epimerase with Co2+
Classification: ISOMERASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2016-06-10
Authors: Cao, T.P., Shin, S.M., Lee, D.W., Lee, S.H.
PDB entry 5b7z: Crystal Structure of Hyperthermophilic Thermotoga maritima L-Ketose-3-Epimerase with Ni2+
Classification: ISOMERASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2016-06-10
Authors: Cao, T.P., Shin, S.M., Lee, D.W., Lee, S.H.
PDB entry 5b80: Crystal Structure of Hyperthermophilic Thermotoga maritima L-Ketose-3-Epimerase with Cu2+
Classification: ISOMERASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-06-10
Authors: Cao, T.P., Shin, S.M., Lee, D.W., Lee, S.H.
PDB entry 5b81: Solution NMR structure of a 16-mer DNA duplex containing quadruple GC mismatches showing staggered base pairing, and consequent rescue of canonical double helical characteristics
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2016-06-11
Authors: De, M., Chatterjee, S.
PDB entry 5b82: Crystal structure of the cyanobacterial heme-protein Tll0287
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus (strain BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-06-12
Authors: Suga, M., Motomura, T., Shen, J.R.
PDB entry 5b83: Crystal structure of Optineurin UBAN in complex with linear ubiquitin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.694 Å
Deposited: 2016-06-12
Authors: Ishii, R., Nureki, O.
PDB entry 5b84: X-ray crystal structure of met I107Y sperm whale myoglobin
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2016-06-12
Authors: Yuan, H.
PDB entry 5b85: X-ray structure of ferric F138Y sperm whale myoglobin
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2016-06-12
Authors: Yuan, H.
PDB entry 5b86: Crystal structure of M-Sec
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.017 Å
Deposited: 2016-06-12
Authors: Yamashita, M., Sato, Y., Yamagata, A., Fukai, S.
PDB entry 5b87: Crystal structure of a Cysteine Desulfurase from Thermococcus onnurineus NA1 in complex with alanine at 2.3 Angstrom resolution
Classification: TRANSFERASE
Source organism: Thermococcus onnurineus (strain NA1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2016-06-13
Authors: Ho, T.-H., Kang, L.-W.
PDB entry 5b88: RRM-like domain of DEAD-box protein, CsdA
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli K-12
Experimental method: SOLUTION NMR
Deposited: 2016-06-13
Authors: Xu, L., Peng, J., Zhang, J., Wu, J., Tang, Y., Shi, Y.
PDB entry 5b89: Crystal structure of a Cysteine Desulfurase from Thermococcus onnurineus NA1 in complex with alanine at 1.5 Angstrom resolution
Classification: TRANSFERASE
Source organism: Thermococcus onnurineus (strain NA1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2016-06-13
Authors: Ho, T.-H., Kang, L.-W.
PDB entry 5b8a: Crystal structure of oxidized chimeric EcAhpC1-186-YFSKHN
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2016-06-14
Authors: Kamariah, N., Sek, M.F., Eisenhaber, B., Eisenhaber, F., Gruber, G.
PDB entry 5b8b: Crystal structure of reduced chimeric E.coli AhpC1-186-YFSKHN
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12); Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2016-06-14
Authors: Kamariah, N., Sek, M.F., Eisenhaber, B., Eisenhaber, F., Gruber, G.
PDB entry 5b8c: High resolution structure of the human PD-1 in complex with pembrolizumab Fv
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.146 Å
Deposited: 2016-06-14
Authors: Horita, S., Shimamura, T., Iwata, S., Nomura, N.
PDB entry 5b8d: Crystal structure of a low occupancy fragment candidate (N-(4-Methyl-1,3-thiazol-2-yl)propanamide) bound adjacent to the ubiquitin binding pocket of the HDAC6 zinc-finger domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2016-06-14
Authors: Harding, R.J., Tempel, W., Collins, P., Pearce, N., Brandao-Neto, J., Douangamath, A., Ravichandran, M., Schapira, M., Bountra, C., Edwards, A.M., von Delft, F., Santhakumar, V., Arrowsmith, C.M., Structural Genomics Consortium (SGC)
PDB entry 5b8f: X-ray Crystal Structure of a 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Pseudomonas aeruginosa
Classification: LYASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2015-04-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 5b8h: Crystal Structure of Type III pantothenate kinase (PanK III) from Burkholderia cenocepacia complexed with pantothenate, imidodiphosphate, and AMP
Classification: TRANSFERASE
Source organism: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1999 Å
Deposited: 2015-04-27
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 5b8i: Crystal structure of Calcineurin A and Calcineurin B in complex with FKBP12 and FK506 from Coccidioides immitis RS
Classification: HYDROLASE
Source organism: Coccidioides immitis (strain RS)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-05-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID), Fox III, D., Dranow, D.M., Lorimer, D.D., Edwards, T.E.
PDB entry 5bca: BETA-AMYLASE FROM BACILLUS CEREUS VAR. MYCOIDES
Classification: HYDROLASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1999-03-12
Authors: Oyama, T., Kusunoki, M., Kishimoto, Y., Takasaki, Y., Nitta, Y.
PDB entry 5bir: DISECTING HISTIDINE INTERACTIONS IN RIBONUCLEASE T1 USING ASN AND GLN MUTATIONS
Classification: ENDONUCLEASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1997-06-30
Authors: Doumen, J., Steyaert, J.