LiteFold/PDB huggingface dataset:
PDB entry 8r4v: Structure of Salt-inducible kinase 3 in complex with inhibitor
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-11-14
Authors: Kack, H., Oster, L.
PDB entry 8r4w: (3+1) hybrid-2 G-quadruplex with a -(llp) loop progression
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-11-14
Authors: Jana, J., Vianney, Y.M., Weisz, K.
PDB entry 8r4x: Structure of Chitinase-3-like protein 1 in complex with inhibitor 30
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-11-14
Authors: Nowak, E., Napiorkowska-Gromadzka, A., Nowotny, M.
PDB entry 8r4y: Homotrimer for the lumenal domain of Vacuolar Sorting Receptor 1 (VSR1)
Classification: PROTEIN TRANSPORT
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2023-11-14
Authors: Borges, R.J., Eldahshoury, M.K., Nettleship, J., Bird, L., An, J., Levada, A.J.L., Shah, N., Thomson, M., Fontes, M.R.M., Owens, R., Denecke, J., Postis, V., Uson, I., Goldman, A., De Marcos Lousa, C.
PDB entry 8r4z: Crystal structure of alpha keto acid C-methyl-transferases MrsA native-form
Classification: TRANSFERASE
Source organism: Pseudomonas syringae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-11-15
Authors: Gerhardt, S., Kemper, F., Andexer, J.N.
PDB entry 8r50: Mouse teneurin-3 compact dimer - A1B1 isoform
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-15
Authors: Gogou, C., Meijer, D.H.
PDB entry 8r51: Mouse teneurin-3 non-compact subunit - A1B1 isoform
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-15
Authors: Gogou, C., Meijer, D.H.
PDB entry 8r52: The complex of Glycogen Phosphorylase with epigallocatechin (EGC).
Classification: TRANSFERASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-15
Authors: Alexopoulos, S., Papakostopoulou, S., Koulas, M.S., Leonidas, D.D., Skamnaki, V.
PDB entry 8r53: The complex of Glycogen Phosphorylase with (-)-Epigallocatechin-3-gallate (EGCG) and glucose.
Classification: TRANSFERASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-15
Authors: Alexopoulos, S., Papakostopoulou, S., Koulas, M.S., Leonidas, D.D., Skamnaki, V.
PDB entry 8r54: Mouse teneurin-3 non-compact subunit - A0B0 isoform
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-15
Authors: Gogou, C., Meijer, D.H.
PDB entry 8r55: Bacillus subtilis MutS2-collided disome complex (collided 70S)
Classification: RIBOSOME
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2023-11-16
Authors: Park, E., Mackens-Kiani, T., Berhane, R., Esser, H., Erdenebat, C., Burroughs, A.M., Berninghausen, O., Aravind, L., Beckmann, R., Green, R., Buskirk, A.R.
PDB entry 8r56: Crystal structure of GH31 family Sulfoquinovosidase BmSQase in covalent complex with SQ-aziridine (SQZ)
Classification: HYDROLASE
Source organism: Priestia megaterium DSM 319
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-11-16
Authors: Sharma, M., Davies, G.J.
PDB entry 8r57: CryoEM structure of wheat 40S ribosomal subunit, head domain
Classification: RIBOSOME
Source organism: Triticum aestivum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2023-11-16
Authors: Kravchenko, O.V., Baymukhametov, T.N., Afonina, Z.A., Vasilenko, K.S.
PDB entry 8r58: The RSK 2 N-terminal kinase domain in complex with BMF (1-19)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-11-16
Authors: Sok, P., Remenyi, A.
PDB entry 8r59: Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (levo form)
Classification: VIRUS LIKE PARTICLE
Source organism: Geobacillus stearothermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-11-16
Authors: Biela, A.P., Heddle, J.G.
PDB entry 8r5a: Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)
Classification: VIRUS LIKE PARTICLE
Source organism: Geobacillus stearothermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-11-16
Authors: Biela, A.P., Heddle, J.G.
PDB entry 8r5b: Crystal structure of human TRIM7 PRYSPRY domain bound to (3-phenoxybenzoyl)-L-glutamine
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-16
Authors: Munoz Sosa, C.J., Kraemer, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8r5c: Crystal structure of human TRIM7 PRYSPRY domain bound to (2-(1-oxoisoindolin-2-yl)-3-phenylpropanoyl)-L-glutamine
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-16
Authors: Munoz Sosa, C.J., Kraemer, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8r5d: Crystal structure of human TRIM7 PRYSPRY domain
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-16
Authors: Munoz Sosa, C.J., Kraemer, A., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8r5e: JNK1 covalently bound to RU77 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-11-16
Authors: Sok, P., Poti, A., Remenyi, A.
PDB entry 8r5f: ERK2 covalently bound to RU83 cyclohexenone based inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-11-16
Authors: Sok, P., Poti, A., Remenyi, A.
PDB entry 8r5g: Neck-tail junction of phage 812 virion (C6)
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.28 Å
Deposited: 2023-11-16
Authors: Cienikova, Z., Novacek, J., Fuzik, T., Benesik, M., Plevka, P.
PDB entry 8r5h: Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-11-16
Authors: Liwocha, J., Prabu, J.R., Kleiger, G., Schulman, B.A.
PDB entry 8r5i: In situ structure of the Vaccinia virus (WR) A4/A10 palisade trimer in mature virions by flexible fitting into a cryoET map
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus WR
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.7 Å
Deposited: 2023-11-16
Authors: Calcraft, T., Hernandez-Gonzalez, M., Nans, A., Rosenthal, P.B., Way, M.
PDB entry 8r5j: Crystal structure of MERS-CoV main protease
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.898 Å
Deposited: 2023-11-16
Authors: Balcomb, B.H., Fairhead, M., Koekemoer, L., Lithgo, R.M., Aschenbrenner, J.C., Chandran, A.V., Godoy, A.S., Lukacik, P., Marples, P.G., Mazzorana, M., Ni, X., Strain-Damerell, C., Thompson, W., Tomlinson, C.W.E., Wild, C., Winokan, M., Fearon, D., Walsh, M.A., von Delft, F.
PDB entry 8r5k: The Fk1 domain of FKBP51 in complex with Antascomicine B
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.89 Å
Deposited: 2023-11-16
Authors: Voll, M.A., Bracher, A., Hausch, F.
PDB entry 8r5l: E-selectin complexed with glycomimetic ligand BW850
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-17
Authors: Jakob, R.P., Ernst, B., Maier, T.
PDB entry 8r5m: E-selectin complexed with glycomimetic ligand DS0567
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-11-17
Authors: Jakob, R.P., Ernst, B., Maier, T.
PDB entry 8r5n: DTX1 WWE domain in complex with ATP
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.812 Å
Deposited: 2023-11-17
Authors: Muenzker, L., Zak, K.M., Boettcher, J.
PDB entry 8r5o: Plastid-encoded RNA polymerase
Classification: GENE REGULATION
Source organism: Sinapis alba
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2023-11-17
Authors: Webster, M.W., Pramanick, I., Vergara-Cruces, A.
PDB entry 8r5q: Structure of apo TDO with a bound inhibitor
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-11-17
Authors: Wicki, M., Mac Sweeney, A.
PDB entry 8r5r: Structure of apo TDO with a bound inhibitor
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.078 Å
Deposited: 2023-11-17
Authors: Wicki, M., Mac Sweeney, A.
PDB entry 8r5s: t113 - De-novo designed soluble homotetramer
Classification: DE NOVO PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2023-11-17
Authors: Messenlehner, J., Stoll, D., Oberdorfer, G.
PDB entry 8r5t: Crystal structure of NDM-1 in complex with benzobisheterocycle compound 14.
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-11-17
Authors: Hinchliffe, P., Spencer, J.
PDB entry 8r5u: VIM-2 metallo-beta-lactamase in complex with benzebisheterocycle compound 14
Classification: ANTIMICROBIAL PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2023-11-17
Authors: Hinchliffe, P., Spencer, J.
PDB entry 8r5v: Crystal structure of bovine pancreatic ribonuclease A in complex with [Sp-PS]-mU-dT dinucleotide
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-17
Authors: Dolot, R., Jastrzebska, K., Antonczyk, P.
PDB entry 8r5w: Crystal structure of the three anaphylatoxin-like modules in fibulin-2
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-18
Authors: Sohail, A.A., Koski, M.K., Ruddock, L.W.
PDB entry 8r5x: Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - F particle
Classification: VIRUS
Source organism: Coxsackievirus B5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-11-18
Authors: Kumar, K., Antanasijevic, A.
PDB entry 8r5y: Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - A particle
Classification: VIRUS
Source organism: Coxsackievirus B5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-18
Authors: Kumar, K., Antanasijevic, A.
PDB entry 8r5z: Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - E particle
Classification: VIRUS
Source organism: Coxsackievirus B5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-11-19
Authors: Kumar, K., Antanasijevic, A.
PDB entry 8r60: 1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptide
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Brevig Mission/1/1918(H1N1)); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-11-19
Authors: Keown, J.R., Carrique, L., Fodor, E., Grimes, J.M.
PDB entry 8r61: Structure of IgE delta epsilon 3-4 in complex with a kappa binding nanobody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-11-20
Authors: Andersen, G.R., Gandini, R.
PDB entry 8r62: Solution structure of Risdiplam bound to the RNA duplex formed upon 5'-splice site recognition
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-11-20
Authors: Malard, F., Campagne, S.
PDB entry 8r63: Solution structure of branaplam bound to the RNA duplex formed upon 5'-splice site recognition
Classification: SPLICING
Experimental method: SOLUTION NMR
Deposited: 2023-11-20
Authors: Malard, F., Campagne, S.
PDB entry 8r64: Cryo-EM structure of the FIGNL1 AAA hexamer bound to RAD51
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-20
Authors: Carver, A., Yates, L.A., Zhang, X.
PDB entry 8r65: 1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptide with ordered PB2 C-terminal domains
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Brevig Mission/1/1918(H1N1)); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å
Deposited: 2023-11-20
Authors: Keown, J.R., Carrique, L., Fodor, E., Grimes, J.M.
PDB entry 8r66: Crystal structure of ThsA Macro domain in complex with signaling molecule
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus amyloliquefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-11-21
Authors: Tamulaitiene, G., Sabonis, D.
PDB entry 8r67: tubulin-cryptophycin complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-21
Authors: Abel, A.C., Muehlethaler, T., Dessin, C., Steinmetz, M.O., Sewald, N., Prota, A.E.
PDB entry 8r68: Zorya anti-bacteriophage defense system ZorC WT
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-11-21
Authors: Hu, H., Taylor, N.M.I.
PDB entry 8r69: Neck and tail of phage 812 virion (composite)
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-11-21
Authors: Cienikova, Z., Novacek, J., Fuzik, T., Benesik, M., Plevka, P.
PDB entry 8r6a: DTX1 WWE domain in complex with ADP bound to WWE1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-11-21
Authors: Muenzker, L., Zak, K.M., Boettcher, J.
PDB entry 8r6b: DTX1 WWE domain in complex with ADP bound to WWE2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-11-21
Authors: Muenzker, L., Zak, K.M., Boettcher, J.
PDB entry 8r6c: 70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Classification: RIBOSOME
Source organism: Escherichia coli BW25113; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-11-22
Authors: Koller, T.O., Wilson, D.N.
PDB entry 8r6d: A quadruplex-duplex hybrid with a three-layered hybrid-2 G-quadruplex topology
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-11-22
Authors: Vianney, Y.M., Weisz, K.
PDB entry 8r6e: SARS-CoV-2 Nucleocapsid dimerization domain
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-11-22
Authors: Fahoum, J., Wiener, R., Rouvinski, A., Isupov, M.N.
PDB entry 8r6f: CryoEM structure of wheat 40S ribosomal subunit, body domain
Classification: RIBOSOME
Source organism: Triticum aestivum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.34 Å
Deposited: 2023-11-22
Authors: Kravchenko, O.V., Baymukhametov, T.N., Afonina, Z.A., Vasilenko, K.S.
PDB entry 8r6g: A quadruplex-duplex hybrid with a three-layered chair G-quadruplex topology
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-11-22
Authors: Vianney, Y.M., Weisz, K.
PDB entry 8r6h: A quadruplex-duplex hybrid with a three-layered hybrid-2 G-quadruplex topology complexed with Phen-DC3
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-11-22
Authors: Vianney, Y.M., Weisz, K.
PDB entry 8r6i: Crystal structure of Candida glabrata Bdf1 bromodomain 1 in the unbound state
Classification: TRANSCRIPTION
Source organism: Nakaseomyces glabratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2023-11-22
Authors: Petosa, C., Wei, K., McKenna, C.E., Govin, J.
PDB entry 8r6j: Crystal structure of Candida glabrata Bdf1 bromodomain 1 bound to a pyrazole ligand
Classification: TRANSCRIPTION
Source organism: Nakaseomyces glabratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-11-22
Authors: Petosa, C., Wei, K., McKenna, C.E., Govin, J.
PDB entry 8r6k: Crystal structure of Candida glabrata Bdf1 bromodomain 1 bound to a phenyltriazine ligand
Classification: TRANSCRIPTION
Source organism: Nakaseomyces glabratus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2023-11-22
Authors: Petosa, C., Wei, K., McKenna, C.E., Govin, J.
PDB entry 8r6l: Crystal structure of Candida glabrata Bdf1 bromodomain 2 in the unbound state
Classification: TRANSCRIPTION
Source organism: Nakaseomyces glabratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-11-22
Authors: Petosa, C., Wei, K., McKenna, C.E., Govin, J.
PDB entry 8r6m: Crystal structure of Candida glabrata Bdf1 bromodomain 2 bound to I-BET151
Classification: TRANSCRIPTION
Source organism: Nakaseomyces glabratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-22
Authors: Petosa, C., Wei, K., McKenna, C.E., Govin, J.
PDB entry 8r6n: Crystal structure of Candida glabrata Bdf1 bromodomain 2 bound to a pyridoindole ligand
Classification: TRANSCRIPTION
Source organism: Nakaseomyces glabratus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-11-22
Authors: Petosa, C., Wei, K., McKenna, C.E., Govin, J.
PDB entry 8r6o: Tubulin-4AZA2996 complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-22
Authors: Herman, J., Vanstreels, E., Bardiot, D., Prota, A.E., Olieric, N., Gao, L.-J., Vercruysse, T., Daems, T., Waer, M., Herdewijn, P., Louat, T., Steinmetz, M.O., De Jonghe, S., Sprangers, B., Daelemans, D.
PDB entry 8r6p: Mycobacterium smegnatis RNA polymerase RP2-like transcription initiation complex with SigmaA, RbpA, HelD N-terminal domain and open promoter DNA
Classification: TRANSCRIPTION
Source organism: Mycolicibacterium smegmatis MC2 155; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-11-22
Authors: Koval, T., Krasny, L., Dohnalek, J., Kouba, T.
PDB entry 8r6r: Mycobacterium smegnatis RNA polymerase RP2-like transcription initiation complex with SigmaA, RbpA and open promoter DNA
Classification: TRANSCRIPTION
Source organism: Mycolicibacterium smegmatis MC2 155; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2023-11-22
Authors: Koval, T., Krasny, L., Dohnalek, J., Kouba, T.
PDB entry 8r6s: Plastid-encoded RNA polymerase (Integrated model)
Classification: GENE REGULATION
Source organism: Sinapis alba
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2023-11-22
Authors: Webster, M.W., Pramanick, I., Vergara-Cruces, A.
PDB entry 8r6t: NMR solution structure of thyropin IrThy-Cd from the hard tick Ixodes ricinus
Classification: PROTEIN BINDING
Source organism: Ixodes ricinus
Experimental method: SOLUTION NMR
Deposited: 2023-11-23
Authors: Srb, P., Veverka, V., Matouskova, Z., Orsaghova, K., Mares, M.
PDB entry 8r6u: Structure of the SFTSV L protein in a transcription-priming state without capped RNA [TRANSCRIPTION-PRIMING (in vitro)]
Classification: VIRAL PROTEIN
Source organism: SFTS virus AH12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-11-23
Authors: Williams, H.M., Thorkelsson, S.R., Vogel, D., Busch, C., Milewski, M., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.
PDB entry 8r6v: The complex of glycogen phosphorylase with EGCG (epigallocatechin gallate) and caffeine.
Classification: TRANSFERASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-11-23
Authors: Alexopoulos, S., Papakostopoulou, S., Koulas, M.S., Leonidas, D.D., Skamnaki, V.
PDB entry 8r6w: Structure of the SFTSV L protein in a transcription-priming state with bound capped RNA [TRANSCRIPTION-PRIMING]
Classification: VIRAL PROTEIN
Source organism: SFTS virus AH12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-11-23
Authors: Williams, H.M., Thorkelsson, S.R., Vogel, D., Busch, C., Milewski, M., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.
PDB entry 8r6x: Cryo-EM structure of a coxsackievirus A6 virus-like particle
Classification: VIRUS LIKE PARTICLE
Source organism: Coxsackievirus A6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-11-23
Authors: Giannopoulou, E.A., Jakobi, A.J.
PDB entry 8r6y: Structure of the SFTSV L protein stalled in a transcription-specific early elongation state with bound capped RNA [TRANSCRIPTION-EARLY-ELONGATION]
Classification: VIRAL PROTEIN
Source organism: SFTS virus AH12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-11-23
Authors: Williams, H.M., Thorkelsson, S.R., Vogel, D., Busch, C., Milewski, M., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.
PDB entry 8r6z: Polysaccharide lyase BtPL33HA (BT4410) Apo form 2
Classification: LYASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-11-23
Authors: Cartmell, A.
PDB entry 8r70: Polysaccharide lyase BtPL33HA (BT4410) Y291A with HA dp4
Classification: LYASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.797 Å
Deposited: 2023-11-23
Authors: Cartmell, A.
PDB entry 8r71: Polysaccharide lyase BtPL33HA (BT4410) Y291A with HAdp4 collected at 1.22 A
Classification: LYASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-11-23
Authors: Cartmell, A.
PDB entry 8r72: Polysaccharide lyase BtPL33HA (BT4410) Y291A with HA dp4 collected at 1.33 A
Classification: LYASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2023-11-23
Authors: Cartmell, A.
PDB entry 8r73: Polysaccharide lyase BcPL33HA (BcellWH2_04512) Apo form
Classification: LYASE
Source organism: Bacteroides cellulosilyticus WH2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-11-23
Authors: Cartmell, A.
PDB entry 8r74: Galectin-1 in complex with thiogalactoside derivative
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-11-23
Authors: Hakansson, M., Diehl, C., Peterson, K., Zetterberg, F., Nilsson, U.
PDB entry 8r75: Polysaccharide lyase BtPL33HA (BT4410) Apo form 1
Classification: LYASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-11-23
Authors: Cartmell, A.
PDB entry 8r76: Ficin C crystal form I
Classification: HYDROLASE
Source organism: Ficus carica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2023-11-23
Authors: Loris, R., Baeyens-Volant, D., Azarkan, M., Kerff, F.
PDB entry 8r78: Ficin D cystein protease
Classification: HYDROLASE
Source organism: Ficus carica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-11-23
Authors: Loris, R., Baeyens-Volant, D., Azarkan, M., Kerff, F.
PDB entry 8r79: The D2 domain of human DTX3L
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-11-24
Authors: Vela-Rodriguez, C., Lehtio, L., Maksimainen, M., Duman, R., Wagner, A., Glumoff, T.
PDB entry 8r7a: Complex of rice blast (Magnaporthe oryzae) effector protein PWL2 with the HMA domain of OsHIPP43 from rice (Oryza sativa)
Classification: PLANT PROTEIN
Source organism: Oryza sativa; Pyricularia oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-24
Authors: Zdrzalek, R., Banfield, M.J.
PDB entry 8r7b: SARS-CoV-2 NSP14 in complex with SAH and TDI-015051
Classification: VIRAL PROTEIN
Source organism: SARS-CoV-2 pseudovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-11-24
Authors: Meyer, C., Garzia, A., Miller, M., Huggins, D.J., Myers, R.W., Liverton, N., Kargman, S., Nitsche, J., Ganichkin, O., Steinbacher, S., Meinke, P.T., Tuschl, T.
PDB entry 8r7c: MutSbeta bound to compound CHDI-00915542 in the canonical DNA-mismatch bound form
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2023-11-24
Authors: Thomsen, M., Thieulin-Pardo, G., Steinbacher, S., Brace, G., Tillack, K., Johnson, P., Ritzefeld, M., Schaertl, S., Frush, E., Warfield, B., Ballantyne, G., Lee, J.-H., Witte, D., Finley, M., Prasad, B., Monteagudo, E., Plotnikov, N., Pacifici, R., Maillard, M., Wilkinson, H., Iyer, R., Dominguez, C., Vogt, T., Felsenfeld, D., Haque, T.
PDB entry 8r7d: Complex of rice blast (Magnaporthe oryzae) mutant effector protein PWL2-SNDE with the HMA domain of OsHIPP43 from rice (Oryza sativa)
Classification: PLANT PROTEIN
Source organism: Oryza sativa; Pyricularia oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-11-24
Authors: Zdrzalek, R., Banfield, M.J.
PDB entry 8r7e: MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.783 Å
Deposited: 2023-11-24
Authors: Thomsen, M., Thieulin-Pardo, G., Steinbacher, S., Brace, G., Tillack, K., Johnson, P., Ritzefeld, M., Schaertl, S., Frush, E., Warfield, B., Ballantyne, G., Lee, J.-H., Witte, D., Finley, M., Prasad, B., Monteagudo, E., Plotnikov, N., Pacifici, R., Maillard, M., Wilkinson, H., Iyer, R., Dominguez, C., Vogt, T., Felsenfeld, D., Haque, T.
PDB entry 8r7f: Transcription factor BARHL2 homodimer with spacing two bp
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-11-24
Authors: Morgunova, E., Popov, A., Yin, Y., Taipale, J.
PDB entry 8r7g: Crystal structure of the kinase domain of ACVR1 (ALK2) with M4K2234
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-11-24
Authors: Williams, E.P., Cros, J., Ensan, D., Smil, D., Edwards, A.M., O'Meara, J.A., Fernandez-Cid, A., Isaac, M.B., Al-awar, R., Bullock, A.N.
PDB entry 8r7h: Cryo-EM structure of Human SHMT1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-11-24
Authors: Spizzichino, S., Marabelli, C., Bharadwaj, A., Jakobi, A.J., Chaves-Sanjuan, A., Giardina, G., Bolognesi, M., Cutruzzola, F.
PDB entry 8r7i: X-ray structure of blue laccase BP76 from the termite Neocapritermes taracua
Classification: OXIDOREDUCTASE
Source organism: Neocapritermes taracua
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-24
Authors: Skerlova, J., Brynda, J., Rezacova, P.
PDB entry 8r7j: Cryo-EM structure of the human TREX-2 complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-25
Authors: Hohmann, U., Graf, M., Plaschka, C.
PDB entry 8r7k: Cryo-EM structure of the human UAP56 - TREX-2 complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-25
Authors: Hohmann, U., Graf, M., Plaschka, C.
PDB entry 8r7l: Cryo-EM structure of the human TREX complex
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2023-11-25
Authors: Hohmann, U., Pacheco-Fiallos, B., Plaschka, C.
PDB entry 8r7m: CTX-M14 in complex with boric acid and 1,2-diol boric ester
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2023-11-26
Authors: Werner, N., Prester, A., Hinrichs, W., Perbandt, M., Betzel, C.
PDB entry 8r7n: Overall structure of the U11 snRNP
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-11-26
Authors: Zhao, J., Galej, W.P.
PDB entry 8r7o: HUWE1 WWE domain in complex with 2'F-ATP
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-11-27
Authors: Muenzker, L., Boettcher, J.
PDB entry 8r7p: human connexin-36 gap junction channel
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-11-27
Authors: Ding, X.Y., Blum, T.B., Korkhov, V.M.
PDB entry 8r7q: human connexin-36 gap junction channel in complex with quinine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-11-27
Authors: Ding, X.Y., Blum, T.B., Korkhov, V.M.
PDB entry 8r7r: human connexin36 gap junction channel in complex with quinidine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-11-27
Authors: Ding, X.Y., Blum, T.B., Korkhov, V.M.
PDB entry 8r7s: Crystal Structure of Cyclophilin TgCyp23 from Toxoplasma gondii in complex with NIM811 (N-methyl-4-isoleucine cyclosporin)
Classification: ISOMERASE
Source organism: Toxoplasma gondii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2023-11-27
Authors: Jimenez-Faraco, E., Hermoso, J.A.
PDB entry 8r7t: Crystal Structure of Cyclophilin TgCyp23 from Toxoplasma gondii in complex with Alisporivir (nonimmunosuppressive analogue of Cyclosporin)
Classification: ISOMERASE
Source organism: Toxoplasma gondii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-11-27
Authors: Jimenez-Faraco, E., Hermoso, J.A.
PDB entry 8r7u: Crystal Structure of Cyclophilin TgCyp23 from Toxoplasma gondii in complex with dihydro Cyclosporin A
Classification: ISOMERASE
Source organism: Toxoplasma gondii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-11-27
Authors: Jimenez-Faraco, E., Hermoso, J.A.
PDB entry 8r7v: MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-11-27
Authors: Haque, T., Brace, G., Felsenfeld, D., Tilack, K., Schaertl, S., Ballantyne, G., Maillard, M., Iyer, R., Prasad, B., Thomsen, M., Wilkionson, H., Plotnikov, N., Ritzefeld, M.
PDB entry 8r7w: Kras G12D in complex with compound 3
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.161 Å
Deposited: 2023-11-27
Authors: Zak, K.M., Kessler, D.
PDB entry 8r7x: Kras G12D in complex with compound 4
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.314 Å
Deposited: 2023-11-27
Authors: Kessler, D., Zak, K.M.
PDB entry 8r7y: Deoxyribonucleoside regulator DeoR in complex with the DNA operator
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2023-11-27
Authors: Pachl, P., Soltysova, M., Rezacova, P.
PDB entry 8r7z: transcription factor BARHL2 homodimer with spacing four bp
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.26 Å
Deposited: 2023-11-27
Authors: Morgunova, E., Popov, A., Yin, Y., Taipale, J.
PDB entry 8r80: SARS-CoV-2 Delta RBD in complex with XBB-9 Fab and an anti-Fab nanobody
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 4.03 Å
Deposited: 2023-11-27
Authors: Zhou, D., Ren, J., Stuart, D.I.
PDB entry 8r81: Crystal structure of the hPXR-LBD in complex with compound JMV6845
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-11-27
Authors: Delfosse, V., Huet, T., Bourguet, W.
PDB entry 8r82: Crystal structure of the hPXR-LBD in complex with compound JMV6944
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-27
Authors: Delfosse, V., Bourguet, W.
PDB entry 8r83: pentameric IgMFc-AIM complex global refinement
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2023-11-28
Authors: Chen, Q., Arai, S., Miyazaki, T., Rosenthal, P.
PDB entry 8r84: pentameric IgMFc-AIM complex focused refinement
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-11-28
Authors: Chen, Q., Arai, S., Miyazaki, T., Rosenthal, P.
PDB entry 8r85: Xylanase from Bacillus circulans mutant E78Q/W9A
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-11-28
Authors: Chikunova, A., Saberi, M., Ubbink, M.
PDB entry 8r86: Xylanase from Bacillus circulans mutant E78Q/W71A
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-11-28
Authors: Chikunova, A., Saberi, M., Ubbink, M.
PDB entry 8r87: Cryo-EM structure of the Sars-Cov2 S trimer without RBDs
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-28
Authors: Effantin, G.
PDB entry 8r88: Structure of P107T BlaC from Mycobacterium tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-28
Authors: Chikunova, A., Ubbink, M.
PDB entry 8r89: Structure of peptide CpRE12 bound to DPC micelle
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2023-11-28
Authors: Kornilov, F., Taldaev, A., Bashkirov, P., Bocharov, E.
PDB entry 8r8a: Structure of the N-terminal domain of CMA in complex with N-acetyllactosamine
Classification: SUGAR BINDING PROTEIN
Source organism: Cucumis melo
Experimental method: X-RAY DIFFRACTION
Resolution: 1.317 Å
Deposited: 2023-11-28
Authors: Lundstrom, J., Varrot, A.
PDB entry 8r8b: Wnt binding to COPalpha and COPBeta2 directs secretion on extracellular vesicles
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.808 Å
Deposited: 2023-11-28
Authors: Gurriaran-Rodriguez, U., Datzkiw, D., Radusky, L.G., Fisher, F., Xiao, F., Ming, H., De Repentigny, Y., Kothary, R., Serrano, L., Rojas, A.L., Hierro, A., Rudnicki, M.A.
PDB entry 8r8c: Structure of the N-terminal domain of CMA from Cucumis melo in complex with N-acetylgalactosamine
Classification: SUGAR BINDING PROTEIN
Source organism: Cucumis melo
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-11-28
Authors: Varrot, A.
PDB entry 8r8d: Cryo-EM structure of coagulation factor beta-XIIa in complex with the garadacimab Fab fragment (symmetric dimer)
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-11-29
Authors: Drulyte, I.
PDB entry 8r8e: DYRK1a in Complex with 2-Cyclopentyl-7-iodo-1H-indole-3-carbonitrile
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2023-11-29
Authors: Stahlecker, J., Dammann, M., Stehle, T., Boeckler, F.M.
PDB entry 8r8f: Ensemble-refined carboxymyoglobin photolysis power titration, 6 mJ/cm2
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-29
Authors: Barends, T., Schlichting, I.
PDB entry 8r8g: Ensemble-refined carboxymyoglobin photolysis power titration, 18 mJ/cm2
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-29
Authors: Barends, T., Schlichting, I.
PDB entry 8r8h: Ensemble-refined carboxymyoglobin photolysis power titration, 31 mJ/cm2
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-29
Authors: Barends, T., Schlichting, I.
PDB entry 8r8i: Ensemble-refined carboxymyoglobin photolysis power titration, 56 mJ/cm2
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-29
Authors: Barends, T., Schlichting, I.
PDB entry 8r8j: Ensemble-refined carboxymyoglobin photolysis power titration, 101 mJ/cm2
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-29
Authors: Barends, T., Schlichting, I.
PDB entry 8r8k: XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-11-29
Authors: Duyvesteyn, H.M.E., Ren, J., Stuart, D.I.
PDB entry 8r8l: The structure of inactivated mature tick-borne encephalitis virus
Classification: VIRUS
Source organism: Tick-borne encephalitis virus (STRAIN SOFJIN)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-11-29
Authors: Pichkur, E.B., Samygina, V.R.
PDB entry 8r8m: 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Classification: RIBOSOME
Source organism: Escherichia coli BW25113; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-11-29
Authors: Koller, T.O., Wilson, D.N.
PDB entry 8r8n: Hallucinated de novo TIM barrel with two helical extensions - HalluTIM2-2
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-11-29
Authors: Beck, J., Shanmugaratnam, S., Hocker, B.
PDB entry 8r8o: Hallucinated de novo TIM barrel with three helical extensions - HalluTIM3-1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-11-29
Authors: Beck, J., Shanmugaratnam, S., Hocker, B.
PDB entry 8r8p: Solution structure of SMN-CX bound to the RNA helix formed upon SMN2 exon7 5'-splice site recognition
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: SOLID-STATE NMR
Deposited: 2023-11-29
Authors: Malard, F., Campagne, S.
PDB entry 8r8q: Lysosomal peptide transporter
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.08 Å
Deposited: 2023-11-29
Authors: Jungnickel, K.E.J., Loew, C.
PDB entry 8r8r: Cryo-EM structure of the human mPSF with PAPOA C-terminus peptide (PAPOAc)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-11-29
Authors: Todesca, S., Sandmeir, F., Keidel, A., Conti, E.
PDB entry 8r8s: Low pH (5.5) as-isolated MSOX movie series dataset 1 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [0.57 MGy]
Classification: OXIDOREDUCTASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2023-11-29
Authors: Ferroni, F.M., Antonyuk, S.V., Rose, S.L., Eady, R.R., Hasnain, S.S.
PDB entry 8r8t: Cryo-EM structure of the inward-facing ethanolamine-bound FLVCR1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-11-29
Authors: Weng, T.-H., Wu, D., Safarian, S.
PDB entry 8r8u: Human PADI4 in complex with cyclic peptide PADI4_3
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-30
Authors: Benton, D.J., Bertran, M.T., Walport, L.J.
PDB entry 8r8v: Human PADI4 in complex with cyclic peptide PADI4_11
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-11-30
Authors: Benton, D.J., Bertran, M.T., Walport, L.J.
PDB entry 8r8w: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 254 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r8x: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 327 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r8y: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 402 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r8z: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 471 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r90: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 604 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r91: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 627 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r92: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 702 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r93: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 847 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r94: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 1001 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r95: Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 1401 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r96: Crystal structure of the cryorhodopsin CryoR2 at pH 4.6, type A crystals
Classification: MEMBRANE PROTEIN
Source organism: Subtercola endophyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-11-30
Authors: Kovalev, K., Lamm, G.H.U., Marin, E.
PDB entry 8r97: Crystal structure of the cryorhodopsin CryoR2 at pH 4.6, type B crystals, non-illuminated state
Classification: MEMBRANE PROTEIN
Source organism: Subtercola sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-11-30
Authors: Kovalev, K., Lamm, G.H.U., Marin, E.
PDB entry 8r98: Crystal structure of the cryorhodopsin CryoR2 at pH 4.6, type B crystals, illuminated state
Classification: MEMBRANE PROTEIN
Source organism: Subtercola sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-11-30
Authors: Kovalev, K., Lamm, G.H.U., Marin, E.
PDB entry 8r99: A soakable crystal form of human CDK7 in complex with AMP-PNP
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-11-30
Authors: Mukherjee, M., Cleasby, A.
PDB entry 8r9a: A soakable crystal form of human CDK7 in complex with AMP-PNP
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-11-30
Authors: Mukherjee, M., Cleasby, A.
PDB entry 8r9b: A soakable crystal form of human CDK7 in complex with AMP-PNP
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-11-30
Authors: Mukherjee, M., Cleasby, A.
PDB entry 8r9c: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 320 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9d: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 399 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9e: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 469 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9f: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 537 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9g: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 600 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9h: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 661 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.
PDB entry 8r9i: Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 733 fs time delay
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-11-30
Authors: Barends, T., Schlichting, I.