LiteFold/PDB huggingface dataset:
PDB entry 9pzq: GluN1/GluN2A in complex with polyclonal autoantibody Fab fragments (class 1), glycine- and glutamate-bound state
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2025-08-11
Authors: Kim, J., Jalali-Yazdi, F., Gouaux, E.
PDB entry 9pzr: GluN1/GluN2A in complex with polyclonal autoantibody Fab fragments (class 2), glycine- and glutamate-bound state
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2025-08-11
Authors: Kim, J., Jalali-Yazdi, F., Gouaux, E.
PDB entry 9pzs: Native GluN1/GluN2A/GluN2B in complex with 5F11 and 3D2 Fabs (class 1), glycine and glutamate bound state
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-08-11
Authors: Kim, J., Gouaux, E.
PDB entry 9pzt: Native GluN1/GluN2A in complex with 5F11 and 3D2 Fabs (class 3), glycine and glutamate-bound state
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.14 Å
Deposited: 2025-08-11
Authors: Kim, J., Gouaux, E.
PDB entry 9pzu: Native GluN1/GluN2B in complex with 5F11 Fab (class 4), glycine and glutamate-bound state
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.36 Å
Deposited: 2025-08-11
Authors: Kim, J., Gouaux, E.
PDB entry 9pzv: Native GluN1/GluN2A in complex with 5F11 and 3D2 Fabs, local ATD dimer
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2025-08-11
Authors: Kim, J., Gouaux, E.
PDB entry 9pzw: GluN1/GluN2A in complex with 3D2 Fab, glycine and glutamate-bound state
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2025-08-11
Authors: Kim, J., Gouaux, E.
PDB entry 9pzx: GluN1/GluN2A in complex with 3D2 Fab, local ATD dimer
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-08-11
Authors: Kim, J., Gouaux, E.
PDB entry 9pzy: Structure of KRAS G12C bound to Divarasib (GDC6036)
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2025-08-11
Authors: Kiefer, J.R., Wang, W., Oh, A., Yu, C.
PDB entry 9q03: Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-08-12
Authors: Zhu, J., Fang, W., Pagarigan, B.
PDB entry 9q05: syNOS monomer bound to NADPH
Classification: OXIDOREDUCTASE
Source organism: Synechococcus sp. PCC 7335
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-08-12
Authors: Nair, D., Crane, B.
PDB entry 9q06: Symmetric Inactivated Locked State
Classification: OXIDOREDUCTASE
Source organism: Synechococcus sp. PCC 7335
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-08-12
Authors: Nair, D., Xu, Y., Crane, B.
PDB entry 9q0a: CTX-M-14 WT in complex with BLIP E73W
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Escherichia coli; Streptomyces clavuligerus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-08-12
Authors: Rivera, P., Lu, S., Sankaran, B., Prasad, B.V.V., Palzkill, T.
PDB entry 9q0b: CTX-M-15 WT in complex with BLIP E73W
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Escherichia coli; Streptomyces clavuligerus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-08-12
Authors: Rivera, P., Lu, S., Sankaran, B., Prasad, B.V.V., Palzkill, T.
PDB entry 9q0c: TEM-1 WT in complex with BLIP E73W
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Escherichia coli; Streptomyces clavuligerus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2025-08-12
Authors: Rivera, P., Lu, S., Sankaran, B., Prasad, B.V.V., Palzkill, T.
PDB entry 9q0d: CryoEM structure of methylmalonic acid semialdehyde dehydrogenase from Burkholderia cenocepacia at 2.38A resolution
Classification: OXIDOREDUCTASE
Source organism: Burkholderia cenocepacia
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2025-08-12
Authors: Abendroth, J., Davies, D.R., Yang, M., Hoarnyi, P.S., Lorimer, D.D., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9q0h: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-08-12
Authors: Werther, R., Stoddard, B.L.
PDB entry 9q0i: Structure of dsRNA 16mer containing 4'-C-methyladenosine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2025-08-12
Authors: Jauregui Matos, V., Fisher, A.J., Beal, P.A.
PDB entry 9q0j: Structure of dsRNA 16mer containing 4'-C-methyluridine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-12
Authors: Jauregui Matos, V., Fisher, A.J., Beal, P.A.
PDB entry 9q0p: Human anti-EBV gH/gL Fab (AMMO1) with G111T light chain mutation
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-08-13
Authors: Young, T.
PDB entry 9q0s: JCN037 in complex with wild-type EGFR
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2025-08-13
Authors: Lantry, A.M., Abidakun, O.A., Heppner, D.E.
PDB entry 9q0t: Crystal structure of WT HIV-1 protease (NL4-3) with inhibitor NR05-01
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-08-13
Authors: Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9q0w: Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-08-13
Authors: Pletnev, S., Kwong, P.
PDB entry 9q0x: syNOS Turnover State
Classification: OXIDOREDUCTASE
Source organism: Synechococcus sp. PCC 7335
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2025-08-13
Authors: Nair, D., Crane, B.
PDB entry 9q0y: Asymmetric syNOS
Classification: OXIDOREDUCTASE
Source organism: Synechococcus sp. PCC 7335
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-08-13
Authors: Nair, D., Crane, B.R.
PDB entry 9q13: Crystal Structure of WT HIV-1 Protease (NL4-3) with Inhibitor NR05-04
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2025-08-13
Authors: Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9q15: syNOS Asymmetric Locked State (Composite)
Classification: OXIDOREDUCTASE
Source organism: Synechococcus sp. PCC 7335
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-08-13
Authors: Nair, D., Crane, B.
PDB entry 9q1a: Open state of lysine 5,6-aminomutase from Thermoanaerobacter tengcongensis
Classification: ISOMERASE
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-08-13
Authors: Tian, S., Tjia-Fleck, S.
PDB entry 9q1b: MS2 bacteriophage coat protein after reassembly as a nanocrate (MS2nc) with no cargo and with waters modeled
Classification: VIRUS
Source organism: Escherichia phage MS2
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.74 Å
Deposited: 2025-08-13
Authors: Zimanyi, C.M., Bobe, D., Jenkins, M.C., Kopylov, M.
PDB entry 9q1c: Crystal Structure of WT HIV-1 Protease (NL4-3) with Inhibitor LR4-46
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-08-13
Authors: Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9q1d: MS2 bacteriophage coat protein with waters modeled
Classification: VIRUS
Source organism: Escherichia phage MS2
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.75 Å
Deposited: 2025-08-13
Authors: Zimanyi, C.M., Bobe, D., Jenkins, M.C., Kopylov, M.
PDB entry 9q1f: Choanoflagellate Salpingoeca macrocollata STING
Classification: IMMUNE SYSTEM
Source organism: Salpingoeca macrocollata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-08-13
Authors: Toyoda, H.C., Li, Y., Kranzusch, P.J.
PDB entry 9q1g: Blimp-1 with compound 5
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.703 Å
Deposited: 2025-08-13
Authors: Watson, E.R.
PDB entry 9q1h: A7 minibinder in complex with Abp2D
Classification: PROTEIN BINDING
Source organism: Acinetobacter baumannii ACICU; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-08-13
Authors: Lopatto, E.D.B., Tamadonfar, K.O., Hultgren, S.J.
PDB entry 9q1j: Cryo-EM structure of SARS-CoV-2 nsp10-nsp14 E191A mutant-T20P14-R complex
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-08-14
Authors: Yang, Y., Liu, C., Liu, B.
PDB entry 9q1l: Crystal structure of the walnut allergen Jug r 2 bound to the human-derived Fab 6D12
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Homo sapiens; Juglans regia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-08-14
Authors: Pedersen, L.C., Lytle, I.R., Mueller, G.A., Croote, D.C.
PDB entry 9q1m: Crystal structure of human TEAD2 Yap binding domain covalently bound to an allosteric regulator
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-08-14
Authors: Bum-Erdene, K., Gonzalez-Gutierrez, G., Meroueh, S.O.
PDB entry 9q1n: Crystal structure of human TEAD2-Yap binding domain covalently bound to an allosteric regulator
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-08-14
Authors: Bum-Erdene, K., Gonzalez-Gutierrez, G., Meroueh, S.O.
PDB entry 9q1o: Crystal structure of human TEAD2-Yap binding domain covalently bound to an allosteric regulator
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2025-08-14
Authors: Bum-Erdene, K., Gonzalez-Gutierrez, G., Meroueh, S.O.
PDB entry 9q1p: Crystal Structure of WT HIV-1 Protease (NL4-3) with Inhibitor NR05-03
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-08-14
Authors: Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9q1v: Crystal Structure of de novo design FimH minibinder F7 complex
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-08-14
Authors: Bera, A.K., Kang, A., Thomson, T., Chazin-Gray, A., Baker, D.
PDB entry 9q1y: Nucleotide-free structure of PmtCD in detergent LMNG
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-08-14
Authors: Worrall, L.J., Li, F.K.K., Hu, J., Lazarski, A.C., Strynadka, N.C.J.
PDB entry 9q22: Crystal structure of ternary complex Helios-ZF2:I-19:CRBN:DDB1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.406 Å
Deposited: 2025-08-14
Authors: Zhu, J., Pagarigan, B.E., Tran, E.T.
PDB entry 9q23: DX2-CX3-RAD51 structure in the intermediate state
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-08-14
Authors: Koo, C.W., Ciferri, C., Yatskevich, S.
PDB entry 9q25: DX2-CX3-RAD51 in the closed state
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2025-08-14
Authors: Koo, C.W., Ciferri, C., Yatskevich, S.
PDB entry 9q28: DX2-CX3-RAD51 in the active state
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-08-14
Authors: Koo, C.W., Ciferri, C., Yatskevich, S.
PDB entry 9q29: DX2-CX3 structure capping RAD51 filament
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-08-14
Authors: Koo, C.W., Ciferri, C., Yatskevich, S.
PDB entry 9q2a: BCDX2-CX3-RAD51-RAD51-ssDNA supercomplex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-08-14
Authors: Koo, C.W., Ciferri, C., Yatskevich, S.
PDB entry 9q2b: DX2-CX3-RAD51 bound to DNA bubble
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-08-14
Authors: Koo, C.W., Ciferri, C., Yatskevich, S.
PDB entry 9q2d: Cryo-EM structure of ternary complex Ikaros-ZF2:CC-885:CRBN:DDB1 (molecular glue degrader)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-08-15
Authors: Zhu, J., Pagarigan, B.E., Tran, E.T.
PDB entry 9q2g: Phosphodiesterase from Burkholderia phage BCSR5 in the closed lid conformation
Classification: VIRAL PROTEIN
Source organism: Burkholderia phage BCSR5
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-15
Authors: Doherty, E.E., Doudna, J.A.
PDB entry 9q2n: Nucleotide-free structure of PmtCD in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-08-15
Authors: Worrall, L.J., Li, F.K.K., Hu, J., Lazarski, A.C., Strynadka, N.C.J.
PDB entry 9q2q: Nucleotide-free structure of PmtCD in peptidisc
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-08-15
Authors: Worrall, L.J., Li, F.K.K., Hu, J., Lazarski, A.C., Strynadka, N.C.J.
PDB entry 9q2r: ADP-bound structure of PmtCD in peptidisc
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-08-15
Authors: Worrall, L.J., Li, F.K.K., Hu, J., Lazarski, A.C., Strynadka, N.C.J.
PDB entry 9q2y: Phosphodiesterase from Burkholderia phage BCSR5 in the open lid conformation
Classification: VIRAL PROTEIN
Source organism: Burkholderia phage BCSR5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-08-15
Authors: Doherty, E.E., Blount, N., Doudna, J.A.
PDB entry 9q31: RIP1 kinase domain in complex with GDC-8264
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-08-15
Authors: Lupardus, P., Fong, R., Demircioglu, F.E.
PDB entry 9q32: RIP1 kinase domain in complex with compound 1
Classification: Transferase/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2025-08-15
Authors: Lupardus, P., Fong, R., Demircioglu, F.E.
PDB entry 9q33: Cereblon Ternary Complex with Blimp1 and compound 5
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-08-15
Authors: Watson, E.R.
PDB entry 9q35: Fibrinogen domain dimer from human Fibrinogen-like protein 1 (FGL-1)
Classification: IMMUNOSUPPRESSANT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-08-15
Authors: Nyovanie, S., Patskovsky, Y., Krogsgaard, M.
PDB entry 9q36: Crystal structure of C43S terpredoxin, a [2Fe-2S] ferredoxin from Pseudomonas sp
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-08-16
Authors: Gable, J.A., Follmer, A.H., Poulos, T.L.
PDB entry 9q39: Structure of a sortase-linked cytochrome c peroxidase - cytochrome c fusion protein
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2025-08-18
Authors: Clark, J.C., Zawistowski, R.K., Crane, B.R.
PDB entry 9q3a: Structure of the Borna Disease Virus 1 L and co-factor P Protein in an apo state
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Borna disease virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-08-18
Authors: Ogino, T., Chakrapani, S., Gibbs, E., Ogino, M.
PDB entry 9q3b: [21-6B G|A] 21 bp DNA assembly that propagates via blunt-end stacking with G stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2025-08-18
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9q3c: RNA oligonucleotide containing a 3'-deoxyapio-T
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-08-18
Authors: Harp, J.M., Egli, E.
PDB entry 9q3d: [20-7B C|A] 20 bp tensegrity triangle that propagates via blunt-end stacking with C stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.03 Å
Deposited: 2025-08-18
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9q3f: Structure of neurodevelopmental mutant AGO1 F180del in complex with guide RNA
Classification: GENE REGULATION
Source organism: Homo sapiens; Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-08-18
Authors: Savidge, A., Adhav, V., Shen, Z., Fu, T., Nakanishi, K.
PDB entry 9q3g: Cryo-EM structure of human AGO1 in complex with guide RNA
Classification: GENE REGULATION
Source organism: Homo sapiens; Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-08-18
Authors: Savidge, A., Adhav, V., Shen, Z., Fu, T., Nakanishi, K.
PDB entry 9q3h: GspB Siglec domain bound to sialyl T antigen linked to serine-FMOC
Classification: SUGAR BINDING PROTEIN
Source organism: Streptococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-08-18
Authors: Morrison, K.M., Martin, K.A., Iverson, T.M.
PDB entry 9q3i: Cryo-EM Structure of the Class II Cyclase Domain in the Bifunctional Copalyl Diphosphate Synthase from Penicillium verruculosum
Classification: LYASE
Source organism: Talaromyces verruculosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-08-18
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9q3j: Structures of LarA-like nickel-pincer nucleotide cofactor-utilizing enzyme with a single catalytic histidine residue from Blautia wexlerae
Classification: ISOMERASE
Source organism: Blautia wexlerae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-08-18
Authors: Subramanian, S., Gatreddi, S., Hausinger, R.P., Hu, J., Parent, K.N.
PDB entry 9q3k: Structure of LarA-like nickel-pincer nucleotide cofactor-utilizing enzyme with a single catalytic histidine residue from Streptococcus plurextorum
Classification: ISOMERASE
Source organism: Streptococcus plurextorum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-08-18
Authors: Subramanian, S., Gatreddi, S., Hausinger, R.P., Hu, J., Parent, K.N.
PDB entry 9q3p: Crystal Structure of WT HIV-1 Protease (NL4-3) with Inhibitor LR4-45
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-08-19
Authors: Shaqra, A.M., Kaur, J., Schiffer, C.A.
PDB entry 9q3t: Crystal Structure of WT HIV-1 Protease (NL4-3) with Inhibitor NR03-92
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-08-19
Authors: Shaqra, A.M., Kaur, J., Schiffer, C.A.
PDB entry 9q3u: Cryo EM structure of elk ACE2 in complex with SARS-CoV-2 spike trimer
Classification: VIRAL PROTEIN
Source organism: Cervus canadensis; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-08-19
Authors: Ye, K., Tao, Y.J., Wan, X.F.
PDB entry 9q3v: Cryo EM structure of elk ACE2 in complex with XBB 1.5 spike RBD
Classification: VIRAL PROTEIN
Source organism: Cervus canadensis; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-08-19
Authors: Ye, K., Tao, Y.J., Wan, X.F.
PDB entry 9q3w: [22-7B C|A] 22 bp tensegrity triangle that propagates via blunt-end stacking with C stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.08 Å
Deposited: 2025-08-19
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9q41: Crystal Structure of Human Apo Spermidine Synthase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-08-19
Authors: Fagbohun, O.O., Canfield, M.A., Clinger, J.A.
PDB entry 9q45: Quaternary complex of PYCR1 with the allosteric inhibitor 1-benzyl-1H-1,3-benzodiazole-2-sulfonic acid in a remote site and NADH and (S)-tetrahydrofuran-2-carboxylic acid in the active site
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-08-19
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9q46: Ternary complex of PYCR1 with the allosteric inhibitor 2-[(2,6-dichlorophenyl)amino]pyridine-3-sulfonic acid in two remote sites and the active site, and (S)-(-)-2-Hydroxy-3,3-dimethylbutyric acid in the active site
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-08-19
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9q4d: A DARPin fused to the double trigger 1TEL variant crystallization chaperone via a direct helical fusion
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.302 Å
Deposited: 2025-08-20
Authors: Averret, J.C., Bradford, M.J., Wilson, E.W., Averret, B.J., Anderson, E., Doukov, T., Moody, J.D.
PDB entry 9q4g: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound 6-((5-(2-(dimethylamino)ethyl)-2,3-difluorophenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4h: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 6-((2,3-difluoro-5-(2-(methylamino)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4i: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 6-((5-(2-(ethyl(methyl)amino)ethyl)-2,3-difluorophenxy)methyl)-4-methylphridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4j: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 6-((5-(2-(azetidin-1-yl)ethyl)-2,3-difluorophenxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4k: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 6-((2,3-difluoro-5-(2-(piperidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.198 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4m: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 6-((2,3-difluoro-5-(2-(3-fluoroazetidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.065 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4n: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 6-((2,3-difluoro-5-(2-(4-fluoropiperidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.148 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4o: Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 6-((5-(2-(4,4-difluoropiperidin-1-yl)ethyl-2,3-difluorophenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.116 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4p: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((5-(2-(dimethylamino)ethyl)-2,3-difluorophenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4q: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((2,3-difluoro-5-(2-(methylamino)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4r: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((5-(2-(diethylamino)ethyl)-2,3-difluorophenxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.931 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4s: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((5-(2-(azetidin-1-yl)ethyl)-2,3-difluorophenxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4t: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((2,3-difluoro-5-(2-(piperidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4u: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((2,3-difluoro-5-(2-(3-fluoroazetidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.922 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4v: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((2,3-difluoro-5-(2-(4-fluoropiperidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4w: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((5-(2-(4,4-difluoropiperidin-1-yl)ethyl-2,3-difluorophenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.931 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4x: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((5-(2-(dimethylamino)ethyl)-2,3-difluorophenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4y: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((2,3-difluoro-5-(2-(methylamino)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q4z: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((5-(2-(ethyl(methyl)amino)ethyl)-2,3-difluorophenxy)methyl)-4-methylphridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q50: AK01 integrase inhibitor bound to Wild-type HIV-1 intasome
Classification: VIRAL PROTEIN/INHIBITOR/DNA
Source organism: HIV-1 06TG.HT008; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2025-08-20
Authors: Jing, T., Li, M., Lyumkis, D.
PDB entry 9q51: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((5-(2-(diethylamino)ethyl)-2,3-difluorophenxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q52: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((5-(2-(azetidin-1-yl)ethyl)-2,3-difluorophenxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q53: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((2,3-difluoro-5-(2-(piperidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q54: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((2,3-difluoro-5-(2-(3-fluoroazetidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q55: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((2,3-difluoro-5-(2-(4-fluoropiperidin-1-yl)ethyl)phenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q57: XZ440 integrase inhibitor bound to Wild-type HIV-1 intasome
Classification: VIRAL PROTEIN/INHIBITOR/DNA
Source organism: HIV-1 06TG.HT008; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2025-08-20
Authors: Jing, T., Li, M., Lyumkis, D.
PDB entry 9q58: Structure of human endothelial nitric oxide synthase heme domain bound with 6-((5-(2-(4,4-difluoropiperidin-1-yl)ethyl-2,3-difluorophenoxy)methyl)-4-methylpyridin-2-amine
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-08-20
Authors: Li, H., Poulos, T.L.
PDB entry 9q5b: Crystal Structure of Human P38 alpha MAPK in Complex with MW01-21-114SRM
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-08-20
Authors: Minasov, G., Brunzelle, J.S., Roy, S.M., Watterson, D.M., Shuvalova, L.
PDB entry 9q5c: Cryo EM structure of alpha-glucosidase (yicI) from Klebsiella aerogenes
Classification: HYDROLASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-08-20
Authors: Lovell, S., Liu, L., Ingham, D.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9q5d: Crystal Structure of WT HIV-1 Protease (NL4-3) with Inhibitor J02-37
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-08-20
Authors: Shaqra, A.M., Kaur, J., Schiffer, C.A.
PDB entry 9q5e: Hsa bound to Neu5Ac alpha2,3 Gal beta OMe
Classification: SUGAR BINDING PROTEIN
Source organism: Streptococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2025-08-20
Authors: Iverson, T.M.
PDB entry 9q5g: Human prolyl endopeptidase (PREP) - apo form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-08-20
Authors: Fucci, I.J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q5j: [12-5B G|A] 12 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-08-20
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9q5k: [23-7B C|A] 23 bp tensegrity triangle that propagates via blunt-end stacking with C stacking on A at the interface
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 9.96 Å
Deposited: 2025-08-20
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9q5m: Structure of the Measles virus Fusion glycoprotein ectodomain in complex with neutralizing antibody Y10F
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Measles morbillivirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-08-20
Authors: Zyla, D., Niemeyer, G., Porotto, M., Saphire, E.O.
PDB entry 9q5u: Crystal structure of Aeromonas salmonicida putative carbohydrate binding module and split domain
Classification: CELL ADHESION
Source organism: Aeromonas salmonicida subsp. salmonicida A449
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-08-21
Authors: Dykstra-MacPherson, T., Ye, Q., Davies, P.L.
PDB entry 9q5v: Structure of the Measles virus Fusion glycoprotein ectodomain in complex with two neutralizing antibodies mAb77 and Y10F
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Measles morbillivirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-08-21
Authors: Zyla, D., Niemeyer, G., Porotto, M., Saphire, E.O.
PDB entry 9q5x: Human prolyl endopeptidase (PREP) - complex with KT-2-74
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-08-21
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q5y: Human prolyl endopeptidase (PREP) - complex with YX45
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2025-08-21
Authors: Fucci, I.J., Xie, Y., Yoo, E., Monteiro, D.C.F.
PDB entry 9q5z: Human prolyl endopeptidase (PREP) - complex with KT-1-147
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-08-21
Authors: Fucci, I.J., Thakur, K., Yoo, E., Monteiro, D.C.F.
PDB entry 9q61: Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 6-((5-(2-(ethyl(methyl)amino)ethyl)-2,3-difluorophenxy)methyl)-4-methylphridin-2-amine
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-08-21
Authors: Li, H., Poulos, T.L.
PDB entry 9q62: Human prolyl endopeptidase (PREP) - complex with KT-2-108
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-08-21
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q63: Peptide Macrocycle MC4H
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-08-21
Authors: Dang, V.T., Nguyen, A.I., McElheny, D.
PDB entry 9q64: Human prolyl endopeptidase (PREP) - complex with KT-2-59
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-08-21
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q65: Human prolyl endopeptidase (PREP) - complex with KT-2-75
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-08-21
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q66: Human prolyl endopeptidase (PREP) - complex with JP-4-1-7
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-08-21
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q6a: Crystal structure of octameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Classification: UNKNOWN FUNCTION
Source organism: Flavobacteriaceae bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2025-08-21
Authors: Collins, B.M., Healy, M.D., Liu, M.
PDB entry 9q6c: Cryo-EM structure of octameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Classification: UNKNOWN FUNCTION
Source organism: Flavobacteriaceae bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.22 Å
Deposited: 2025-08-22
Authors: Collins, B.M., Healy, M.D., Liu, M., Cater, R.J.
PDB entry 9q6d: CryoEM structure of decameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Classification: UNKNOWN FUNCTION
Source organism: Flavobacteriaceae bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.77 Å
Deposited: 2025-08-22
Authors: Collins, B.M., Healy, M.D., Liu, M., Cater, R.J.
PDB entry 9q6e: Peptide Macrocycle MC4H-MeAMeH
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-08-22
Authors: Dang, V.T., Martynowycz, M., McElheny, D., Nguyen, A.I.
PDB entry 9q6h: Human Serum Albumin in complex with four nanobodies: nb33, nb77, nb125 & N42
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-08-22
Authors: Hang, W., Sang, Z., Xiang, Y.F., Taylor, D.J., Shi, Y.
PDB entry 9q6j: Human prolyl endopeptidase (PREP) - complex with KT-2-126
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-08-22
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q6k: Human prolyl endopeptidase (PREP) - complex with JP-2-1-7
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-08-22
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q6l: Human prolyl endopeptidase (PREP) - complex with KT-2-197
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-08-22
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q6n: Human Serum Albumin in complex with four nanobodies: nb118, nb68, N30 & N23
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-08-22
Authors: Hang, W., Sang, Z., Xiang, Y.F., Taylor, D.J., Shi, Y.
PDB entry 9q6x: Human prolyl endopeptidase (PREP) - complex with KT-2-186
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-08-22
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9q6y: Human Serum Albumin in complex with four nanobodies: N33, nb139 & nb104
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-08-22
Authors: Hang, W., Sang, Z., Xiang, Y.F., Taylor, D.J., Shi, Y.
PDB entry 9q6z: Human Serum Albumin in complex with four nanobodies: N33, nb139, nb39 & nb104
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-08-22
Authors: Hang, W., Sang, Z., Xiang, Y.F., Taylor, D.J., Shi, Y.
PDB entry 9q71: Structure of the Measles Virus Fusion Glycoprotein Ectodomain in Postfusion Conformation Bound to Neutralizing Antibody H8
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Measles morbillivirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-08-22
Authors: Zyla, D., Niemeyer, G., Porotto, M., Saphire, E.O.
PDB entry 9q72: Trypanosoma brucei EIF4E5 translation initiation factor in complex with cap-4
Classification: TRANSLATION
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-08-22
Authors: Penteado, R.F., Guimaraes, B.G.
PDB entry 9q73: Crystal structure of T. brucei EIF4E5 in complex with EIF4G1 peptide
Classification: TRANSLATION
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-08-22
Authors: Penteado, R.F., Guimaraes, B.G.
PDB entry 9q74: Crystal structure of T. brucei EIF4E5 in complex with EIF4G1 peptide and cap-4.
Classification: TRANSLATION
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-08-22
Authors: Penteado, R.F., Guimaraes, B.G.
PDB entry 9q75: Crystal structure of T. cruzi EIF4E5 in complex with EIF4G1 peptide and cap-4.
Classification: TRANSLATION
Source organism: Trypanosoma cruzi Dm28c
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-08-22
Authors: Penteado, R.F., Guimaraes, B.G.
PDB entry 9q78: Crystal structure of T. cruzi EIF4E6 in complex with EIF4G5 peptide
Classification: TRANSLATION
Source organism: Trypanosoma cruzi; Trypanosoma cruzi Dm28c
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-08-22
Authors: Penteado, R.F., Guimaraes, B.G.
PDB entry 9q79: Crystal structure of T. cruzi EIF4E6 in complex with EIF4G5 peptide and cap-4
Classification: TRANSLATION
Source organism: Trypanosoma cruzi; Trypanosoma cruzi Dm28c
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-08-22
Authors: Penteado, R.F., Guimaraes, B.G.
PDB entry 9q7a: dsDNA in the central channel of the bacteriophage P74-26 neck
Classification: VIRUS/DNA
Source organism: Oshimavirus P7426
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.54 Å
Deposited: 2025-08-22
Authors: Sedivy, E.L., Agnello, E., Song, K., Xu, C., Kelch, B.A.
PDB entry 9q7b: Structure of the Measles Virus Fusion Glycoprotein Ectodomain in Prefusion Conformation Bound to Neutralizing Antibody H8
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Measles morbillivirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2025-08-22
Authors: Zyla, D., Niemeyer, G., Porotto, M., Saphire, E.O.
PDB entry 9q7k: Pointed end of Cofilin-2 Bound F-actin
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-08-24
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9q7l: Barbed end of F-actin and cofilin on sides
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2025-08-24
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9q7m: Barbed end of cofilin actin, cofilin on second-to-last barbed end subunit
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-08-24
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9q7n: Cofilin barbed end, cofilin on the two barbed end subunits
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2025-08-24
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9q7o: One CAP-1 Bound to the Pointed End of F-actin
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-08-24
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9q7q: ABCE1-eRF1-RNC-AMD1C
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-08-25
Authors: Maldosevic, E., Jomaa, A.
PDB entry 9q7s: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) in complex with Jun13735
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-08-25
Authors: Kohaal, N., Wang, J., Chen, Y.
PDB entry 9q7u: Composite map for Cryo-EM structure of DNMT3A2-DNMT3B3 tetramer bound to 167H3K36me2-nucleosome
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-08-25
Authors: Xie, X., Zhou, X.E., Worden, E.J., Jones, P.A.
PDB entry 9q7v: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.356 Å
Deposited: 2025-08-25
Authors: Werther, R., Schwensen, J.S., Stoddard, B.L.
PDB entry 9q7w: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.537 Å
Deposited: 2025-08-25
Authors: Werther, R., Stoddard, B.L.
PDB entry 9q7x: Crystal structure of the MKP5 loop mutant N448A in complex with the allosteric inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2025-08-25
Authors: Manjula, R., Bennett, A.M., Lolis, E.