LiteFold/PDB huggingface dataset:
PDB entry 6nv7: BACE1 in complex with a macrocyclic inhibitor
Classification: PEPTIDE BINDING PROTEIN/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.132 Å
Deposited: 2019-02-04
Authors: Yen, Y.C., Ghosh, A.K., Mesecar, A.D.
PDB entry 6nv8: Perdeuterated tyrosine phenol-lyase from Citrobacter freundii complexed with an aminoacrylate intermediate formed from S-ethyl-L-cysteine and 4-hydroxypyridine
Classification: lyase/lyase inhibitor
Source organism: Citrobacter freundii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2019-02-04
Authors: Phillips, R.S.
PDB entry 6nv9: BACE1 in complex with a macrocyclic inhibitor
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2019-02-04
Authors: Yen, Y.C., Ghosh, A.K., Mesecar, A.D.
PDB entry 6nva: Crystal structure of Escherichia coli dihydrodipicolinate synthase and propionate covalently bound to K161.
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2019-02-04
Authors: Thomas, L.M., Chooback, L.
PDB entry 6nvb: Crystal structure of the inhibitor-free form of the serine protease kallikrein-4
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.636 Å
Deposited: 2019-02-04
Authors: Riley, B.T., Buckle, A.M., McGowan, S.
PDB entry 6nvc: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 6
Classification: LIGASE,TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2019-02-04
Authors: Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.
PDB entry 6nvd: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with triazole linked compound 9
Classification: LIGASE, TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2019-02-05
Authors: Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.
PDB entry 6nve: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 7
Classification: LIGASE, TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2019-02-05
Authors: Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.
PDB entry 6nvf: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 8
Classification: LIGASE,TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.989 Å
Deposited: 2019-02-05
Authors: Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.
PDB entry 6nvg: FGFR4 complex with N-(3,5-dichloro-2-((5-((2,6-dichloro-3,5-dimethoxybenzyl)oxy)pyrimidin-2-yl)amino)phenyl)acrylamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2019-02-05
Authors: Lin, X., Smaill, J.B., Squire, C.J., Yosaatmadja, Y.
PDB entry 6nvh: FGFR4 complex with N-(2-((5-((2,6-dichloro-3,5-dimethoxybenzyl)oxy)pyrimidin-2-yl)amino)-3-methylphenyl)acrylamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2019-02-05
Authors: Lin, X., Smaill, J.B., Squire, C.J.
PDB entry 6nvi: FGFR4 complex with N-(3-chloro-2-((5-((2,6-dichloro-3,5-dimethoxybenzyl)oxy)pyrimidin-2-yl)amino)-5-fluorophenyl)acrylamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.117 Å
Deposited: 2019-02-05
Authors: Lin, X., Smaill, J.B., Squire, C.J., Yosaatmadja, Y.
PDB entry 6nvj: FGFR4 complex with N-(2-((5-((2,6-dichloro-3,5-dimethoxybenzyl)oxy)pyrimidin-2-yl)amino)-3-fluorophenyl)acrylamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2019-02-05
Authors: Lin, X., Smaill, J.B., Squire, C.J., Yosaatmadja, Y.
PDB entry 6nvk: FGFR4 complex with BLU-554, N-((3S,4S)-3-((6-(2,6-dichloro-3,5-dimethoxyphenyl)quinazolin-2-yl)amino)tetrahydro-2H-pyran-4-yl)acrylamide
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2019-02-05
Authors: Lin, X., Smaill, J.B., Squire, C.J., Yosaatmadja, Y.
PDB entry 6nvl: FGFR1 complex with N-(2-((5-((2,6-dichloro-3,5-dimethoxybenzyl)oxy)pyrimidin-2-yl)amino)-3-methylphenyl)acrylamide
Classification: TRANSFERASE/TRANSFERASE Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2019-02-05
Authors: Lin, X., Smaill, J.B., Squire, C.J.
PDB entry 6nvm: Crystal structure of 23S rRNA methyltransferase ErmE
Classification: TRANSFERASE
Source organism: Saccharopolyspora erythraea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2019-02-05
Authors: Stsiapanava, A., Selmer, M.
PDB entry 6nvo: Crystal structure of Pseudomonas putida nuclease MPE
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.196 Å
Deposited: 2019-02-05
Authors: Goldgur, Y., Shuman, S., Ejaz, A.
PDB entry 6nvp: Crystal structure of Pseudomonas putida nuclease MPE
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2019-02-05
Authors: Goldgur, Y., Shuman, S., Ejaz, A.
PDB entry 6nvq: Crystal structure of the VASH1-SVBP complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2019-02-05
Authors: Adamopoulos, A., Perrakis, A., Heidebrecht, T.
PDB entry 6nvr: Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in Apo form
Classification: TRANSFERASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.562 Å
Deposited: 2019-02-05
Authors: Thomas, S.E., Whitehouse, A.J., Coyne, A.G., Abell, C., Mendes, V.M., Blundell, T.L.
PDB entry 6nvt: Crystal structure of TLA-1 extended spectrum Beta-lactamase
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2019-02-05
Authors: Rudino-Pinera, E., Cifuentes-Castro, V.H., Rodriguez-Almazan, C.
PDB entry 6nvu: Crystal structure of TLA-1 extended spectrum Beta-lactamase in complex with Clavulanic Acid
Classification: hydrolase/antibiotic
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2019-02-05
Authors: Rudino-Pinera, E., Cifuentes-Castro, V.H., Rodriguez-Almazan, C.
PDB entry 6nvw: Crystal structure of penicillin G acylase from Bacillus megaterium
Classification: HYDROLASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.203 Å
Deposited: 2019-02-05
Authors: Blankenfeldt, W.
PDB entry 6nvx: Crystal structure of penicillin G acylase from Bacillus sp. FJAT-27231
Classification: HYDROLASE
Source organism: Bacillus sp. FJAT-27231
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2019-02-05
Authors: Blankenfeldt, W.
PDB entry 6nvy: Crystal structure of penicillin G acylase from Bacillus thermotolerans
Classification: HYDROLASE
Source organism: Quasibacillus thermotolerans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2019-02-05
Authors: Blankenfeldt, W.
PDB entry 6nvz: NMR Structure of the DNA binding domain of EhMybS3
Classification: DNA BINDING PROTEIN
Source organism: Entamoeba histolytica
Experimental method: SOLUTION NMR
Deposited: 2019-02-05
Authors: Titaux-Delgado, G.A., del Rio-Portilla, f.
PDB entry 6nw0: Crystal Structure Desulfovibrio desulfuricans Nickel-Substituted Rubredoxin
Classification: METAL BINDING PROTEIN
Source organism: Desulfovibrio desulfuricans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2019-02-05
Authors: Slater, J.W., Marguet, S.C., Gray, M.E., Sotomayor, M., Shafaat, H.S.
PDB entry 6nw1: Crystal Structure Desulfovibrio desulfuricans Nickel-Substituted Rubredoxin V37N
Classification: METAL BINDING PROTEIN
Source organism: Desulfovibrio desulfuricans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2019-02-05
Authors: Slater, J.W., Marguet, S.C., Gray, M.E., Sotomayor, M., Shafaat, H.S.
PDB entry 6nw2: Structure of human RIPK1 kinase domain in complex with compound 11
Classification: Transferase/Transferase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2019-02-05
Authors: Fong, R., Lupardus, P.J.
PDB entry 6nw3: BACE1 in complex with a macrocyclic inhibitor
Classification: PEPTIDE BINDING PROTEIN/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.352 Å
Deposited: 2019-02-05
Authors: Yen, Y.C., Ghosh, A.K., Mesecar, A.D.
PDB entry 6nw4: Evolution of a computationally designed Kemp eliminase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2019-02-06
Authors: Bunzel, A., Mittl, P., Hilvert, D.
PDB entry 6nw5: Crystal structure of TmPep1050 aminopeptidase with its metal cofactors
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2019-02-06
Authors: Dutoit, R.
PDB entry 6nw6: Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with S-Adenosyl methionine
Classification: TRANSFERASE
Source organism: Mycobacterium abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2019-02-06
Authors: Thomas, S.E., Whitehouse, A.J., Coyne, A.G., Abell, C., Mendes, V., Blundell, T.L.
PDB entry 6nw7: Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with S-Adenosyl-L-homocysteine
Classification: TRANSFERASE
Source organism: Mycobacterium abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.481 Å
Deposited: 2019-02-06
Authors: Thomas, S.E., Whitehouse, A.J., Coyne, A.G., Abell, C., Mendes, V., Blundell, T.L.
PDB entry 6nw8: SOLUTION STRUCTURE OF CN29, A TOXIN FROM CENTRUROIDES NOXIUS SCORPION VENOM
Classification: TOXIN
Experimental method: SOLUTION NMR
Deposited: 2019-02-06
Authors: Delepierre, M., Gurrola, G.B., Possani, L.D., Guijarro, J.I.
PDB entry 6nw9: CRYSTAL STRUCTURE OF A TAILSPIKE PROTEIN 3 (TSP3, ORF212) FROM ESCHERICHIA COLI O157:H7 BACTERIOPHAGE CBA120
Classification: VIRAL PROTEIN
Source organism: Escherichia virus CBA120
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2019-02-06
Authors: Greenfield, J.Y., Herzberg, O.
PDB entry 6nwa: The structure of the photosystem I IsiA super-complex
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2019-02-06
Authors: Toporik, H., Li, J., Williams, D., Chiu, P.L., Mazor, Y.
PDB entry 6nwb: PYL10 bound to the selective agonist hexabactin
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.003 Å
Deposited: 2019-02-06
Authors: Peterson, F.C., Vaidya, A., Jensen, D.R., Volkman, B.F., Cutler, S.R.
PDB entry 6nwc: PYL10 bound to the ABA pan-agonist 3CB
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2019-02-06
Authors: Peterson, F.C., Vaidya, A., Jensen, D.R., Volkman, B.F., Cutler, S.R.
PDB entry 6nwd: X-ray Crystallographic structure of Gloeobacter rhodopsin
Classification: TRANSPORT PROTEIN
Source organism: Gloeobacter violaceus (strain ATCC 29082 / PCC 7421)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2019-02-06
Authors: Ernst, O.P., Morizumi, T., Ou, W.L.
PDB entry 6nwe: Crystal structure of bovine opsin with beta octyl glucoside bound
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.705 Å
Deposited: 2019-02-06
Authors: Eger, B.T., Morizumi, T., Ernst, O.P.
PDB entry 6nwg: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 3a
Classification: Ligase,Transferase
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.939 Å
Deposited: 2019-02-06
Authors: Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.
PDB entry 6nwh: Structures of the transcriptional regulator BgaR, a lactose sensor.
Classification: TRANSCRIPTION
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2019-02-06
Authors: Peat, T.S., Newman, J.
PDB entry 6nwj: Structures of the transcriptional regulator BgaR, a lactose sensor.
Classification: TRANSCRIPTION
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2019-02-06
Authors: Peat, T.S., Newman, J.
PDB entry 6nwk: Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with dexamethasone and PGC1a coregulator fragment
Classification: HORMONE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2019-02-06
Authors: Liu, X., Ortlund, E.A.
PDB entry 6nwl: Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with hydrocortisone and PGC1a coregulator fragment
Classification: HORMONE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.595 Å
Deposited: 2019-02-06
Authors: Liu, X., Ortlund, E.A.
PDB entry 6nwm: Structures of the transcriptional regulator BgaR, a lactose sensor.
Classification: TRANSCRIPTION
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2019-02-06
Authors: Peat, T.S., Newman, J.
PDB entry 6nwn: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with glutamic acid linked compound 10
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.005 Å
Deposited: 2019-02-06
Authors: Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.
PDB entry 6nwo: Structures of the transcriptional regulator BgaR, a lactose sensor.
Classification: TRANSCRIPTION
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2019-02-06
Authors: Peat, T.S., Newman, J.
PDB entry 6nwp: Chronic traumatic encephalopathy Type I Tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2019-02-07
Authors: Falcon, B., Zivanov, J., Zhang, W., Murzin, A.G., Garringer, H.J., Vidal, R., Crowther, R.A., Newell, K.L., Ghetti, B., Goedert, M., Scheres, H.W.
PDB entry 6nwq: Chronic traumatic encephalopathy Type II Tau filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2019-02-07
Authors: Falcon, B., Zivanov, J., Zhang, W., Murzin, A.G., Garringer, H.J., Vidal, R., Crowther, R.A., Newell, K.L., Ghetti, B., Goedert, M., Scheres, H.W.
PDB entry 6nwr: Thioester acyl-intermediate of Apolipoprotein N-acyltransferase (Lnt)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2019-02-07
Authors: Wiseman, B., Hogbom, M.
PDB entry 6nws: RORgamma Ligand Binding Domain
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2019-02-07
Authors: Strutzenberg, T.S., Park, H.J., Griffin, P.R.
PDB entry 6nwt: RORgamma Ligand Binding Domain
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2019-02-07
Authors: Strutzenberg, T.S., Park, H., Griffin, P.R.
PDB entry 6nwu: RORgamma Ligand Binding Domain
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2019-02-07
Authors: Strutzenberg, T.S., Park, H., Griffin, P.R.
PDB entry 6nwv: Insulin Lispro Analog
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2019-02-07
Authors: Cruz-Rangel, A., Romero, A., Reyes-Grajeda, J.P.
PDB entry 6nww: Crystal structure of the RRM domain of S. pombe Puf1 in the P212121 space group
Classification: RNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2019-02-07
Authors: Qiu, C., Hall, T.M.T.
PDB entry 6nwx: Structure of mouse GILT, an enzyme involved in antigen processing
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2019-02-07
Authors: Li, Y., Cresswell, P.
PDB entry 6nwy: Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)
Classification: RIBOSOME
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2019-02-07
Authors: Hoffer, E.D., Subaramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.
PDB entry 6nwz: Crystal structure of Agd3 a novel carbohydrate deacetylase
Classification: HYDROLASE
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2019-02-07
Authors: Bamford, N.C., Howell, P.L.
PDB entry 6nx0: Crystal structure of the diheme peroxidase BthA from Burkholderia thailandensis E264
Classification: OXIDOREDUCTASE
Source organism: Burkholderia thailandensis E264
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2019-02-07
Authors: Cohen, S.E., Drennan, C.L.
PDB entry 6nx1: STRUCTURE OF HUMAN PREGNANE X RECEPTOR LIGAND BINDING DOMAIN BOUND TETHERED WITH SRC CO-ACTIVATOR PEPTIDE AND COMPOUND-3 AKA 1,1,1,3,3,3-HEXAFLUORO-2-{4-[1-(4- LUOROBENZENESULFONYL)CYCLOPENTYL]PHENYL}PROPAN-2-OL
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2019-02-07
Authors: Khan, J.A.
PDB entry 6nx2: Crystal structure of computationally designed protein AAA
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2019-02-07
Authors: Wei, K.Y., Bick, M.J.
PDB entry 6nx3: Structures of the transcriptional regulator BgaR, a lactose sensor.
Classification: TRANSCRIPTION
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2019-02-07
Authors: Peat, T.S., Newman, J.
PDB entry 6nx4: Structure of the C-terminal Helical Repeat Domain of Eukaryotic Elongation Factor 2 Kinase (eEF-2K)
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2019-02-08
Authors: Piserchio, A., Will, N., Giles, D.H., Hajredini, F., Dalby, K.N., Ghose, R.
PDB entry 6nx5: Crystal structure of the RRM domain of S. pombe Puf1 in the P21 space group
Classification: RNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.554 Å
Deposited: 2019-02-08
Authors: Qiu, C., Hall, T.M.T.
PDB entry 6nx6: ECAII(D90T,K162T) MUTANT IN COMPLEX WITH CITRATE AT PH 5
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2019-02-08
Authors: Lubkowski, J., Wlodawer, A.
PDB entry 6nx7: ECAII(D90T,K162T) MUTANT IN COMPLEX WITH CITRATE AT PH 5.6
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2019-02-08
Authors: Lubkowski, J., Wlodawer, A.
PDB entry 6nx8: ECAII(D90T,K162T) MUTANT IN COMPLEX WITH CITRATE AT PH 6.2
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2019-02-08
Authors: Lubkowski, J., Wlodawer, A.
PDB entry 6nx9: ECAII(D90T,K162T) MUTANT IN COMPLEX WITH CITRATE AT PH 7
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2019-02-08
Authors: Lubkowski, J., Wlodawer, A.
PDB entry 6nxa: ECAII(D90T,K162T) MUTANT AT PH 7
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2019-02-08
Authors: Lubkowski, J., Wlodawer, A.
PDB entry 6nxb: ECAII IN COMPLEX WITH CITRATE AT PH 7
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2019-02-08
Authors: Lubkowski, J., Wlodawer, A.
PDB entry 6nxc: ECAI(T162A) MUTANT IN COMPLEX WITH CITRATE AT PH 4
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2019-02-08
Authors: Lubkowski, J., Wlodawer, A.
PDB entry 6nxd: TYPE I L-ASPARAGINASE FROM ESCHERICHIA COLI IN COMPLEX WITH CITRATE AT PH 4
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2019-02-08
Authors: Lubkowski, J., Wlodawer, A.
PDB entry 6nxe: Cryo-EM Reconstruction of Protease-Activateable Adeno-Associated Virus 9 (AAV9-L001)
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2019-02-08
Authors: Bennett, A.B., Agbandje-Mckenna, M.
PDB entry 6nxf: Crystal structure of mouse REC114 PH domain in complex with ANKRD31 C terminus
Classification: NUCLEAR PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.791 Å
Deposited: 2019-02-08
Authors: Wang, J., Patel, D.J.
PDB entry 6nxg: Crystal structure of glycylpeptide N-tetradecanoyltransferase from Plasmodium vivax in complex with inhibitor 303a
Classification: transferase/transferase inhibitor
Source organism: Plasmodium vivax (strain Salvador I)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2019-02-08
Authors: Staker, B.L., Mayclin, S., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6nxi: Flavin Transferase ApbE from Vibrio cholerae
Classification: TRANSFERASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2019-02-08
Authors: Osipiuk, J., Fang, X., Chakravarthy, S., Juarez, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6nxj: Flavin Transferase ApbE from Vibrio cholerae, H257G mutant
Classification: TRANSFERASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2019-02-08
Authors: Osipiuk, J., Fang, X., Chakravarthy, S., Juarez, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6nxk: Ubiquitin binding variants
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2019-02-08
Authors: Miller, D.J., Watson, E.R.
PDB entry 6nxl: Ubiquitin binding variants
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2019-02-08
Authors: Miller, D.J., Watson, E.R.
PDB entry 6nxm: Crystal structure of computationally designed protein XAA_GVDQ
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2019-02-08
Authors: Wei, K.Y., Bick, M.J.
PDB entry 6nxq: Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C13A mutant
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2019-02-09
Authors: Jimenez-Sandoval, P., Diaz-Quezada, C., Torres-Larios, A., Brieba, L.G.
PDB entry 6nxr: Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C13D mutant
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2019-02-09
Authors: Jimenez-Sandoval, P., Diaz-Quezada, C., Torres-Larios, A., Brieba, L.G.
PDB entry 6nxs: Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C218Y mutant
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2019-02-09
Authors: Jimenez-Sandoval, P., Diaz-Quezada, C., Torres-Larios, A., Brieba, L.G.
PDB entry 6nxv: Crystal structure of the theta class glutathione S-transferase from the citrus canker pathogen Xanthomonas axonopodis pv. citri, apo form
Classification: TRANSFERASE
Source organism: Xanthomonas axonopodis pv. citri (strain 306)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2019-02-10
Authors: Hilario, E., De Keyser, S., Fan, L.
PDB entry 6nxw: Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C218S mutant
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2019-02-10
Authors: Jimenez-Sandoval, P., Diaz-Quezada, C., Torres-Larios, A., Brieba, L.G.
PDB entry 6nxx: Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C218K mutant
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2019-02-10
Authors: Jimenez-Sandoval, P., Fuentes-Pascacio, A., Diaz-Quezada, C., Torres-Larios, A., Brieba, L.G.
PDB entry 6nxy: Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C218D mutant
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2019-02-10
Authors: Jimenez-Sandoval, P., Diaz-Quezada, C., Torres-Larios, A., Brieba, L.G.
PDB entry 6nxz: Crystal structure of trimethoprim-resistant type II dihydrofolate reductase in complex with a bisbenzimidazole inhibitor
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2019-02-10
Authors: Yachnin, B.J., Berghuis, A.M.
PDB entry 6ny0: Crystal structure of trimethoprim-resistant type II dihydrofolate reductase in complex with a bisbenzimidazole inhibitor
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2019-02-10
Authors: Yachnin, B.J., Berghuis, A.M.
PDB entry 6ny1: CasX-gRNA-DNA(30bp) State II
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Deltaproteobacteria bacterium; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2019-02-10
Authors: Liu, J.J., Orlova, N., Nogales, E., Doudna, J.A.
PDB entry 6ny2: CasX-gRNA-DNA(45bp) state I
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Deltaproteobacteria bacterium; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2019-02-10
Authors: Liu, J.J., Orlova, N., Nogales, E., Doudna, J.A.
PDB entry 6ny3: CasX ternary complex with 30bp target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Deltaproteobacteria bacterium; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2019-02-10
Authors: Liu, J.J., Orlova, N., Nogales, E., Doudna, J.A.
PDB entry 6ny4: Crystal structure of JAK3 kinase domain in complex with a pyrrolopyridazine carboxamide inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2019-02-11
Authors: Sack, J.S.
PDB entry 6ny5: Crystal structure of the PUM-HD domain of S. pombe Puf1 in complex with RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Schizosaccharomyces pombe; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.002 Å
Deposited: 2019-02-11
Authors: Qiu, C., Hall, T.M.T.
PDB entry 6ny6: Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å
Deposited: 2019-02-11
Authors: Pavelich, I.J., Hoffer, E.D., Maehigashi, T., Dunham, C.M.
PDB entry 6ny7: Crystal Structure of NDM-1 D199N with Compound 16
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2019-02-11
Authors: Akhtar, A., Chen, Y.
PDB entry 6ny8: Crystal structure of computationally designed protein XAA_GVDQ with calcium
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2019-02-11
Authors: Wei, K.Y., Bick, M.J.
PDB entry 6ny9: Alpha/beta hydrolase domain-containing protein 10 from mouse
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2019-02-11
Authors: Cao, Y., Rice, P.A., Dickinson, B.C.
PDB entry 6nya: Crystal Structure of ubiquitin E1 (Uba1) in complex with Ubc3 (Cdc34) and ubiquitin
Classification: LIGASE/TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.065 Å
Deposited: 2019-02-11
Authors: Olsen, S.K., Williams, K.M., Atkison, J.H.
PDB entry 6nyb: Structure of a MAPK pathway complex
Classification: TRANSFERASE
Source organism: Homo sapiens; Spodoptera exigua
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2019-02-11
Authors: Park, E., Rawson, S., Li, K., Jeon, H., Eck, M.J.
PDB entry 6nyc: Munc13-1 C2B-domain, calcium free
Classification: METAL BINDING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.893 Å
Deposited: 2019-02-11
Authors: Tomchick, D.R., Rizo, J., Machius, M., Lu, J.
PDB entry 6nyd: Crystal Structure of S. cerevisiae Ubc3 (Cdc34)
Classification: LIGASE/TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2019-02-11
Authors: Olsen, S.K., Williams, K.M., Atkison, J.H.
PDB entry 6nye: Crystal structure of computationally designed protein XAX
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2019-02-11
Authors: Wei, K.Y., Bick, M.J.
PDB entry 6nyf: Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 1 (OA-1)
Classification: TOXIN
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2019-02-11
Authors: Zhang, K., Zhang, H., Li, S., Au, S., Chiu, W.
PDB entry 6nyg: Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2a (OA-2a)
Classification: TOXIN
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2019-02-11
Authors: Zhang, K., Zhang, H., Li, S., Au, S., Chiu, W.
PDB entry 6nyh: Structure of human RIPK1 kinase domain in complex with GNE684
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2019-02-11
Authors: Fong, R., Lupardus, P.J.
PDB entry 6nyi: Crystal structure of computationally designed protein XXA
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2019-02-11
Authors: Wei, K.Y., Bick, M.J.
PDB entry 6nyj: Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2b (OA-2b)
Classification: TOXIN
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2019-02-11
Authors: Zhang, K., Zhang, H., Li, S., Au, S., Chiu, W.
PDB entry 6nyk: Crystal structure of computationally designed protein XAX_GGDQ
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2019-02-11
Authors: Wei, K.Y., Bick, M.J.
PDB entry 6nyl: Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2c (OA-2c)
Classification: TOXIN
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2019-02-11
Authors: Zhang, K., Zhang, H., Li, S., Au, S., Chiu, W.
PDB entry 6nym: Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2d (OA-2d)
Classification: TOXIN
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2019-02-11
Authors: Zhang, K., Zhang, H., Li, S., Au, S., Chiu, W.
PDB entry 6nyn: Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2e (OA-2e)
Classification: TOXIN
Source organism: Helicobacter pylori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2019-02-11
Authors: Zhang, K., Zhang, H., Li, S., Au, S., Chiu, W.
PDB entry 6nyo: Crystal structure of a human Cdc34-ubiquitin thioester mimetic
Classification: LIGASE/TRANSFERASE
Source organism: Homo sapiens; Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 1.502 Å
Deposited: 2019-02-11
Authors: Olsen, S.K., Williams, K.M., Atkison, J.H.
PDB entry 6nyp: Crystal structure of UL144/BTLA complex
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Macacine herpesvirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2019-02-11
Authors: Aruna, B., Zajonc, D.M., Doukov, T.
PDB entry 6nyq: Crystal structure of glycosylated lysosomal membrane protein (GLMP) luminal domain bound to a Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2019-02-12
Authors: Huang, C.S., Boenig, G., Hymowitz, S.G.
PDB entry 6nyr: The crystal structure of CroV588 a novel circular LRR protein structure
Classification: UNKNOWN FUNCTION
Source organism: Cafeteriavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.431 Å
Deposited: 2019-02-12
Authors: Huyton, T., Jaiswal, M., Gorlich, D.
PDB entry 6nys: The crystal structure of CroV588 a novel circular LRR protein structure
Classification: UNKNOWN FUNCTION
Source organism: Cafeteria roenbergensis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2019-02-12
Authors: Huyton, T., Jaiswal, M., Gorlich, D.
PDB entry 6nyt: Munc13-1 C2B-domain, calcium bound
Classification: METAL BINDING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.369 Å
Deposited: 2019-02-12
Authors: Tomchick, D.R., Rizo, J., Machius, M., Lu, J.
PDB entry 6nyu: The X-ray crystal structure of Staphylococcus aureus Fatty Acid Kinase (Fak) B1 F263T mutant protein to 2.18 Angstrom resolution
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.183 Å
Deposited: 2019-02-12
Authors: Cuypers, M.G., Gullett, J.M., Subramanian, C., White, S.W., Rock, C.O.
PDB entry 6nyv: Structure of spastin AAA domain in complex with a quinazoline-based inhibitor
Classification: ISOMERASE/INHIBITOR
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.425 Å
Deposited: 2019-02-12
Authors: Pisa, R., Cupido, T., Kapoor, T.M.
PDB entry 6nyw: Structure of spastin AAA domain N527C mutant in complex with 8-fluoroquinazoline-based inhibitor
Classification: ISOMERASE/INHIBITOR
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.189 Å
Deposited: 2019-02-12
Authors: Pisa, R., Cupido, T., Kapoor, T.M.
PDB entry 6nyx: Human parainfluenza virus type 3 fusion protein N-terminal heptad repeat domain+VI
Classification: ANTIVIRAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2019-02-12
Authors: Outlaw, V.K., Kreitler, D.F., Gellman, S.H.
PDB entry 6nyy: human m-AAA protease AFG3L2, substrate-bound
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2019-02-12
Authors: Lander, G.C., Puchades, C.
PDB entry 6nz0: Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2
Classification: VIRUS
Source organism: Adeno-associated virus - 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2019-02-12
Authors: Meyer, N.L., Xie, Q., Davulcu, O., Yoshioka, C., Chapman, M.S.
PDB entry 6nz1: Crystal structure of computationally designed protein XXA_GVDQ
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2019-02-12
Authors: Wei, K.Y., Bick, M.J.
PDB entry 6nz2: NMR solution structure of Bcd1p120-303 from Saccharomyces cerevisiae
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: SOLUTION NMR
Deposited: 2019-02-12
Authors: Bragantini, B., Quinternet, M., Charpentier, B., Manival, X.
PDB entry 6nz3: Crystal structure of computationally designed protein XAA_GGHN
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2019-02-12
Authors: Wei, K.Y., Bick, M.J.
PDB entry 6nz4: YcjX-GDP (type I)
Classification: SIGNALING PROTEIN
Source organism: Shewanella oneidensis (strain MR-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2019-02-12
Authors: Lee, S., Tsai, J., Tsai, F.T.
PDB entry 6nz5: YcjX-GDPCP
Classification: SIGNALING PROTEIN
Source organism: Shewanella oneidensis (strain MR-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.233 Å
Deposited: 2019-02-12
Authors: Lee, S., Tsai, J., Tsai, F.T., Sung, N., Lee, J., Chang, C.
PDB entry 6nz6: YcjX-GDP (type II)
Classification: SIGNALING PROTEIN
Source organism: Shewanella oneidensis (strain MR-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2019-02-12
Authors: Tsai, J., Sung, N., Lee, J., Chang, C., Lee, S., Tsai, F.T.
PDB entry 6nz7: Crystal structure of broadly neutralizing Influenza A antibody 429 B01 in complex with Hemagglutinin Hong Kong 1968
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2019-02-13
Authors: Zhou, T., Kwong, P.D.
PDB entry 6nz8: Structure of carbamylated apo OXA-231 carbapenemase
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2019-02-13
Authors: Favaro, D.C., Llontop, E.E., Vasconcelos, F.N., Antunes, V.U., Farah, S.C., Lincopan, N.
PDB entry 6nz9: Crystal structure of E. coli fumarase C bound to citrate at 1.53 angstrom resolution
Classification: LYASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.528 Å
Deposited: 2019-02-13
Authors: Stuttgen, G.M., May, J.F., Bhattcharyya, B., Weaver, T.M.
PDB entry 6nza: Crystal structure of E. coli fumarase C K324A variant with closed SS Loop at 1.41 angstrom resolution
Classification: LYASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.406 Å
Deposited: 2019-02-13
Authors: Weaver, T.M., May, J.F., Bhattacharyya, B.
PDB entry 6nzb: Crystal structure of E. coli fumarase C S318A variant with closed SS Loop at 1.37 angstrom resolution
Classification: LYASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2019-02-13
Authors: Weaver, T.M., May, J.F., Bhattacharyya, B.
PDB entry 6nzc: Crystal structure of E. coli fumarase C N326A variant with closed SS Loop at 1.40 angstrom resolution
Classification: LYASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.403 Å
Deposited: 2019-02-13
Authors: Weaver, T.M., May, J.F., Bhattacharyya, B.
PDB entry 6nzd: Cryo-EM Structure of the Lysosomal Folliculin Complex (FLCN-FNIP2-RagA-RagC-Ragulator)
Classification: signaling protein/inhibitor
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2019-02-13
Authors: Fromm, S.A., Young, L.N., Hurley, J.H.
PDB entry 6nze: CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH Compound_5 AKA 4-[(2-CARBAMOYLPHEN YL)AMINO]-6-[(5-FLUOROPYRIDIN-2-YL)AMINO]-N-METHYLPYRIDINE -3-CARBOXAMIDE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2019-02-13
Authors: Muckelbauer, J.M.
PDB entry 6nzf: CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH Compound_5 AKA 4-[(2-CARBAMOYLPHEN YL)AMINO]-6-[(5-FLUOROPYRIDIN-2-YL)AMINO]-N-METHYLPYRIDINE -3-CARBOXAMIDE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2019-02-13
Authors: Muckelbauer, J.M.
PDB entry 6nzg: Bacteroides uniformis beta-glucuronidase 2 covalently bound to cyclophellitol-6-carboxylate aziridine
Classification: hydrolase/hydrolase inhibitor
Source organism: Bacteroides uniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2019-02-13
Authors: Pellock, S.J., Jariwala, P.B., Redinbo, M.R.
PDB entry 6nzh: CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH Compound_40 AKA 6-cyclopropaneamido-4-[(2-methanesulfonylphenyl)amino]-N-methylpyridine-3-carboxamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2019-02-13
Authors: Muckelbauer, J.M.
PDB entry 6nzi: Low resolution crystal structure of the bacterial multidrug efflux transporter AcrB in the presence of cadmium
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 4.44 Å
Deposited: 2019-02-13
Authors: Smith, A.T., Rosenzweig, A.C.
PDB entry 6nzj: Structural Analysis of a Nitrogenase Iron Protein from Methanosarcina acetivorans: Implications for CO2 Capture by a Surface-Exposed [Fe4S4] Cluster
Classification: OXIDOREDUCTASE
Source organism: Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2019-02-13
Authors: Rettberg, L.A., Kang, W., Stiebritz, M.T., Hiller, C.J., Lee, C.C., Liedtke, J., Ribbe, M.W., Hu, Y.
PDB entry 6nzk: Structural basis for human coronavirus attachment to sialic acid receptors
Classification: VIRAL PROTEIN
Source organism: Human coronavirus OC43
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2019-02-13
Authors: Tortorici, M.A., Walls, A.C., Lang, Y., Wang, C., Li, Z., Koerhuis, D., Boons, G.J., Bosch, B.J., Rey, F.A., de Groot, R., Veesler, D.
PDB entry 6nzl: Solution structure of POS-1, a CCCH-type Tandem Zinc Finger protein from C. elegans
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: SOLUTION NMR
Deposited: 2019-02-14
Authors: Ertekin, A., Massi, F.
PDB entry 6nzm: Brutons tyrosine kinase in complex with compound 50.
Classification: transferase/transferase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2019-02-14
Authors: Marcotte, D.J.
PDB entry 6nzn: Dimer-of-dimer amyloid fibril structure of glucagon
Classification: HORMONE, PROTEIN FIBRIL
Experimental method: SOLID-STATE NMR
Deposited: 2019-02-14
Authors: Gelenter, M.D., Smith, K.J., Liao, S.Y., Mandala, V.S., Dregni, A.J., Lamm, M.S., Tian, Y., Wei, X., Pochan, D.J., Tucker, T.J., Su, Y., Hong, M.
PDB entry 6nzo: Set2 bound to nucleosome
Classification: GENE REGULATION
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719); Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2019-02-14
Authors: Halic, M., Bilokapic, S.
PDB entry 6nzp: CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH COMPOUND-11 AKA 6-CYCLOPROPANEAMIDO-4-{[2-METHOXY-3-(1-METHYL-1H-1,2,4-TRI AZOL-3-YL)PHENYL]AMINO}-N-(?H?)METHYLPYRIDAZINE-3-CARBOXAMIDE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2019-02-14
Authors: Khan, J.A.
PDB entry 6nzq: CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH Compound_29 AKA 6-[(5-FLUORO-4-METH YLPYRIDIN-2-YL)AMINO]-4-({2-METHOXY-3-[(PYRIDIN-2-YLMETHYL )CARBAMOYL]PHENYL}AMINO)-N-METHYLPYRIDINE-3-CARBOXAMIDE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2019-02-14
Authors: Khan, J.A.
PDB entry 6nzr: CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH Compound_12 AKA 4-[(2-methanesulfonylphenyl)amino]-N-(H3)methyl-6-[(pyridin-2- yl)amino]pyridazine-3-carboxamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2019-02-14
Authors: Khan, J.A.
PDB entry 6nzs: Dextranase AoDex KQ11
Classification: HYDROLASE
Source organism: Pseudarthrobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2019-02-14
Authors: Ren, W., Yan, W., Gu, L., Feng, Y., Dong, D., Wang, S., Wang, C., Lyu, M.
PDB entry 6nzt: Crystal structure of HCV NS3/4A protease in complex with voxilaprevir
Classification: viral protein/inhibitor
Source organism: Hepatitis C virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2019-02-14
Authors: Appleby, T.C., Taylor, J.G.
PDB entry 6nzu: Structure of the human frataxin-bound iron-sulfur cluster assembly complex
Classification: TRANSFERASE, OXIDOREDUCTASE
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2019-02-14
Authors: Fox, N.G., Yu, X., Xidong, F., Alain, M., Joseph, N., Claire, S.D., Christine, B., Han, S., Yue, W.W.
PDB entry 6nzv: Crystal structure of HCV NS3/4A protease in complex with compound 12
Classification: viral protein/inhibitor
Source organism: Hepatitis C virus subtype 1a
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2019-02-14
Authors: Appleby, T.C., Taylor, J.G.
PDB entry 6nzw: LRRC8A-DCPIB in MSP1E3D1 nanodisc constricted state
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2019-02-14
Authors: Kern, D.M., Hite, R.K., Brohawn, S.G.
PDB entry 6nzx: Hadesarchaea YNP_N21 cytochrome b5 domain protein (KUO41884.1)
Classification: METAL BINDING PROTEIN
Source organism: Hadesarchaea archaeon YNP_N21
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2019-02-14
Authors: Teakel, S.L., Marama, M.S., Aragao, D., Forwood, J.K., Cahill, M.A.
PDB entry 6nzy: Structural Determination of the Carboxy-terminal portion of ATP-citrate lyase
Classification: LYASE
Source organism: Chlorobium limicola
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2019-02-14
Authors: Nguyen, V.H., Fraser, M.E.