LiteFold/PDB huggingface dataset:
PDB entry 3wg7: A 1.9 angstrom radiation damage free X-ray structure of large (420KDa) protein by femtosecond crystallography
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-07-29
Authors: Hirata, K., Shinzawa-Itoh, K., Yano, N., Takemura, S., Kato, K., Hatanaka, M., Muramoto, K., Kawahara, T., Tsukihara, T., Yamashita, E., Tono, K., Ueno, G., Hikima, T., Murakami, H., Inubushi, Y., Yabashi, M., Ishikawa, T., Yamamoto, M., Ogura, T., Sugimoto, H., Shen, J.R., Yoshikawa, S., Ago, H.
PDB entry 3wg8: Crystal structure of the abscisic acid receptor PYR1 in complex with an antagonist AS6
Classification: HORMONE RECEPTOR
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-07-31
Authors: Akiyama, T., Sue, M., Takeuchi, J., Okamoto, M., Muto, T., Endo, A., Nambara, E., Hirai, N., Ohnishi, T., Cutler, S.R., Todoroki, Y., Yajima, S.
PDB entry 3wg9: Crystal structure of RSP, a Rex-family repressor
Classification: TRANSCRIPTION
Source organism: Thermoanaerobacter ethanolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2013-08-03
Authors: Zheng, Y., Ko, T.-P., Guo, R.-T.
PDB entry 3wgb: Crystal structure of aeromonas jandaei L-allo-threonine aldolase
Classification: LYASE
Source organism: Aeromonas jandaei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-08-03
Authors: Qin, H.M., Imai, F.L., Miyakawa, T., Kataoka, M., Okai, M., Ohtsuka, J., Hou, F., Nagata, K., Shimizu, S., Tanokura, M.
PDB entry 3wgc: Aeromonas jandaei L-allo-threonine aldolase H128Y/S292R double mutant
Classification: LYASE
Source organism: Aeromonas jandaei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-08-03
Authors: Qin, H.M., Imai, F.L., Miyakawa, T., Kataoka, M., Okai, M., Ohtsuka, J., Hou, F., Nagata, K., Shimizu, S., Tanokura, M.
PDB entry 3wgd: Crystal structure of ERp46 Trx1
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-08-04
Authors: Inaba, K., Suzuki, M., Kojima, R.
PDB entry 3wge: Crystal structure of ERp46 Trx2
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2013-08-04
Authors: Inaba, K., Suzuki, M., Kojima, R.
PDB entry 3wgg: Crystal structure of RSP in complex with alpha-NAD+
Classification: TRANSCRIPTION
Source organism: Thermoanaerobacter ethanolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2013-08-05
Authors: Zheng, Y., Ko, T.-P., Guo, R.-T.
PDB entry 3wgh: Crystal structure of RSP in complex with beta-NADH
Classification: TRANSCRIPTION
Source organism: Thermoanaerobacter ethanolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2013-08-05
Authors: Zheng, Y., Ko, T.-P., Guo, R.-T.
PDB entry 3wgi: Crystal structure of RSP in complex with beta-NAD+ and operator DNA
Classification: TRANSCRIPTION/DNA
Source organism: Thermoanaerobacter ethanolicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2013-08-05
Authors: Zheng, Y., Ko, T.-P., Guo, R.-T.
PDB entry 3wgj: STAPHYLOCOCCUS AUREUS FTSZ T7 chimera mutant, T7Bs
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.179 Å
Deposited: 2013-08-06
Authors: Matsui, T., Tanaka, I., Yao, M.
PDB entry 3wgk: STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAG, DeltaT7GAG-GDP
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.799 Å
Deposited: 2013-08-06
Authors: Han, X., Matsui, T., Yu, J., Tanaka, I., Yao, M.
PDB entry 3wgl: STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAN bound with GDP, DeltaT7GAN-GDP
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.066 Å
Deposited: 2013-08-06
Authors: Han, X., Matsui, T., Yu, J., Tanaka, I., Yao, M.
PDB entry 3wgm: STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAN bound with GTP, DeltaT7GAN-GTP
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.091 Å
Deposited: 2013-08-06
Authors: Han, X., Matsui, T., Yu, J., Tanaka, I., Yao, M.
PDB entry 3wgn: STAPHYLOCOCCUS AUREUS FTSZ bound with GTP-gamma-S
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.606 Å
Deposited: 2013-08-06
Authors: Matsui, T., Mogi, N., Tanaka, I., Yao, M.
PDB entry 3wgo: Crystal structure of Q154L/T173I/R199M/P248S/H249/N276S mutant of meso-dapdh from Clostridium tetani E88
Classification: OXIDOREDUCTASE
Source organism: Clostridium tetani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2013-08-06
Authors: Liu, W.D., Li, Z., Huang, C.H., Guo, R.T., Wu, Q.Q., Zhu, D.M.
PDB entry 3wgp: Crystal Structure Analysis of Vitamin D receptor
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-08-07
Authors: Itoh, S., Iijima, S.
PDB entry 3wgq: Crystal structure of meso-dapdh Q154L/T173I/R199M/P248S/H249N/N276S mutant with DAP of from Clostridium tetani E88
Classification: OXIDOREDUCTASE
Source organism: Clostridium tetani
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-08-07
Authors: Liu, W.D., Li, Z., Huang, C.H., Guo, R.T., Wu, Q.Q., Zhu, D.M.
PDB entry 3wgt: Crystal structure of D-amino acid oxidase mutant
Classification: OXIDOREDUCTASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2013-08-09
Authors: Yasukawa, K., Nakano, S., Asano, Y.
PDB entry 3wgu: Crystal structure of a Na+-bound Na+,K+-ATPase preceding the E1P state without oligomycin
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-08-09
Authors: Kanai, R., Ogawa, H., Vilsen, B., Cornelius, F., Toyoshima, C.
PDB entry 3wgv: Crystal structure of a Na+-bound Na+,K+-ATPase preceding the E1P state with oligomycin
Classification: HYDROLASE/TRANSPORT PROTEIN/ANTIBIOTIC
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-08-09
Authors: Kanai, R., Ogawa, H., Vilsen, B., Cornelius, F., Toyoshima, C.
PDB entry 3wgw: Structure of PCNA bound to a small molecule inhibitor
Classification: DNA BINDING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-08-12
Authors: Hashimoto, H.
PDB entry 3wgx: Crystal structure of ERp46 Trx2 in a complex with Prx4 C-term
Classification: ISOMERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 0.92 Å
Deposited: 2013-08-13
Authors: Inaba, K., Suzuki, M., Kojima, R.
PDB entry 3wgy: Crystal structure of meso-dapdh Q154L/T173I/R199M/P248S/H249N/N276S mutant with 4-methyl-2-oxovalerate of from Clostridium tetani E88
Classification: OXIDOREDUCTASE
Source organism: Clostridium tetani
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-08-19
Authors: Liu, W.D., Li, Z., Huang, C.H., Guo, R.T., Wu, Q.Q., Zhu, D.M.
PDB entry 3wgz: Crystal structure of meso-dapdh Q154L/T173I/R199M/P248S/H249N/N276S mutant with D-leucine of from Clostridium tetani E88
Classification: OXIDOREDUCTASE
Source organism: Clostridium tetani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2013-08-20
Authors: Liu, W.D., Li, Z., Huang, C.H., Guo, R.T., Wu, Q.Q., Zhu, D.M.
PDB entry 3wh0: Structure of Pin1 Complex with 18-crown-6
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2013-08-20
Authors: Lee, C.C., Liu, C.I., Jeng, W.Y., Wang, A.H.J.
PDB entry 3wh1: Crystal Structure of a Family GH19 Chitinase from Bryum coronatum in complex with (GlcNAc)4 at 1.0 A resolution
Classification: HYDROLASE
Source organism: Bryum coronatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2013-08-21
Authors: Numata, T., Umemoto, N., Ohnuma, T., Fukamizo, T.
PDB entry 3wh2: Human Mincle in complex with citrate
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2013-08-21
Authors: Furukawa, A., Kamishikiryo, J., Mori, D., Toyonaga, K., Okabe, Y., Toji, A., Kanda, R., Miyake, Y., Ose, T., Yamasaki, S., Maenaka, K.
PDB entry 3wh3: human Mincle, ligand free form
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2013-08-21
Authors: Furukawa, A., Kamishikiryo, J., Mori, D., Toyonaga, K., Okabe, Y., Toji, A., Kanda, R., Miyake, Y., Ose, T., Yamasaki, S., Maenaka, K.
PDB entry 3wh5: Crystal structure of GH1 beta-glucosidase Td2F2
Classification: HYDROLASE
Source organism: metagenomes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2013-08-21
Authors: Jo, T., Fushinobu, S., Uchiyama, T., Yaoi, K.
PDB entry 3wh6: Crystal structure of GH1 beta-glucosidase Td2F2 glucose complex
Classification: HYDROLASE
Source organism: metagenomes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2013-08-21
Authors: Jo, T., Fushinobu, S., Uchiyama, T., Yaoi, K.
PDB entry 3wh7: Crystal structure of GH1 beta-glucosidase Td2F2 L-fucose complex
Classification: HYDROLASE
Source organism: metagenomes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2013-08-21
Authors: Jo, T., Fushinobu, S., Uchiyama, T., Yaoi, K.
PDB entry 3wh8: Crystal structure of GH1 beta-glucosidase Td2F2 isofagomine complex
Classification: HYDROLASE
Source organism: metagenomes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-08-21
Authors: Jo, T., Fushinobu, S., Uchiyama, T., Yaoi, K.
PDB entry 3wh9: The ligand-free structure of ManBK from Aspergillus niger BK01
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2013-08-22
Authors: Huang, J.W., Chen, C.C., Huang, C.H., Huang, T.Y., Wu, T.H., Cheng, Y.S., Ko, T.P., Lin, C.Y., Liu, J.R., Guo, R.T.
PDB entry 3wha: Hsp90 alpha N-terminal domain in complex with a tricyclic inhibitor
Classification: Chaperone/chaperone Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2013-08-23
Authors: Fukami, T.A., Ono, N.
PDB entry 3whb: Crystal structure of FadR from Bacillus subtilis, a transcriptional regulator involved in the regulation of fatty acid degradation
Classification: TRANSCRIPTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2013-08-23
Authors: Fujihashi, M., Nakatani, T., Miki, K.
PDB entry 3whc: Crystal structure of a transcriptional regulator FadR from Bacillus subtilis in complex with stearoyl-CoA
Classification: TRANSCRIPTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-08-23
Authors: Fujihashi, M., Nakatani, T., Miki, K.
PDB entry 3whd: C-type lectin, human MCL
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2013-08-24
Authors: Furukawa, A., Kamishikiryo, J., Mori, D., Toyonaga, K., Okabe, Y., Toji, A., Kanda, R., Miyake, Y., Ose, T., Yamasaki, S., Maenaka, K.
PDB entry 3whe: A new conserved neutralizing epitope at the globular head of hemagglutinin in H3N2 influenza viruses
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2013-08-25
Authors: Fujii, Y., Sumida, T., Shirouzu, M., Yokoyama, S.
PDB entry 3whi: Crystal structure of unautoprocessed form of IS1-inserted Pro-subtilisin E
Classification: HYDROLASE
Source organism: Bacillus subtilis subsp. subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-08-26
Authors: Uehara, R., Angkawidjaja, C., Koga, Y., Kanaya, S.
PDB entry 3whj: Crystal structure of Nas2 N-terminal domain
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2013-08-26
Authors: Satoh, T., Saeki, Y., Hiromoto, T., Wang, Y.-H., Uekusa, Y., Yagi, H., Yoshihara, H., Yagi-Utsumi, M., Mizushima, T., Tanaka, K., Kato, K.
PDB entry 3whk: Crystal structure of PAN-Rpt5C chimera
Classification: HYDROLASE
Source organism: Pyrococcus furiosus; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-08-26
Authors: Satoh, T., Saeki, Y., Hiromoto, T., Wang, Y.-H., Uekusa, Y., Yagi, H., Yoshihara, H., Yagi-Utsumi, M., Mizushima, T., Tanaka, K., Kato, K.
PDB entry 3whl: Crystal structure of Nas2 N-terminal domain complexed with PAN-Rpt5C chimera
Classification: HYDROLASE/CHAPERONE
Source organism: Pyrococcus furiosus; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2013-08-26
Authors: Satoh, T., Saeki, Y., Hiromoto, T., Wang, Y.-H., Uekusa, Y., Yagi, H., Yoshihara, H., Yagi-Utsumi, M., Mizushima, T., Tanaka, K., Kato, K.
PDB entry 3whm: Structure of Hemoglobin Complex with 18-crown-6
Classification: HEME-BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2013-08-27
Authors: Lee, C.C., Lin, L.L., Wang, A.H.J.
PDB entry 3whn: Hemerythrin-like domain of DcrH I119H mutant (met)
Classification: METAL BINDING PROTEIN
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-08-29
Authors: Okamoto, Y., Onoda, A., Sugimoto, H., Takano, Y., Hirota, S., Kurtz Jr., D.M., Shiro, Y., Hayashi, T.
PDB entry 3who: X-ray-Crystallographic Structure of an RNase Po1 Exhibiting Anti-tumor Activity
Classification: HYDROLASE
Source organism: Pleurotus ostreatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2013-08-30
Authors: Kobayashi, H., Katsurtani, T., Hara, Y., Motoyoshi, N., Itagaki, T., Akita, F., Higashiura, A., Yamada, Y., Suzuki, M., Inokuchi, N.
PDB entry 3whp: Crystal structure of the C-terminal domain of Themus thermophilus LitR in complex with cobalamin
Classification: GENE REGULATION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2013-08-30
Authors: Agari, Y., Takano, H., Beppu, T., Ueda, K., Shinkai, A.
PDB entry 3whq: Crystal structure of gamma-glutamyltranspeptidase from Bacillus subtilis (crystal soaked for 0 min. in acivicin soln. )
Classification: HYDROLASE, TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2013-08-30
Authors: Wada, K., Fukuyama, K.
PDB entry 3whr: Crystal structure of gamma-glutamyltranspeptidase from Bacillus subtilis (crystal soaked for 3min. in acivicin soln. )
Classification: HYDROLASE, TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2013-08-30
Authors: Ida, T., Suzuki, H., Fukuyama, K., Hiratake, J., Wada, K.
PDB entry 3whs: Crystal structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin
Classification: HYDROLASE, TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-08-30
Authors: Wada, K., Fukuyama, K.
PDB entry 3wht: Crystal structure of ERGIC-53/MCFD2, Calcium-free form
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-08-30
Authors: Satoh, T., Suzuki, K., Kato, K.
PDB entry 3whu: Crystal structure of ERGIC-53/MCFD2, Calcium/Man2-bound form
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-08-30
Authors: Satoh, T., Suzuki, K., Kato, K.
PDB entry 3whw: MTH1 in complex with Ruthenium-based inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.701 Å
Deposited: 2013-09-03
Authors: Streib, M., Kraeling, K., Richter, K., Steuber, H., Meggers, E.
PDB entry 3whx: Crystal structure of anti-prostaglandin E2 Fab fragment PGE1 complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-09-03
Authors: Sugahara, M., Ago, H., Saino, H., Miyano, M.
PDB entry 3wi0: P453H/I471T mutant of PB2 middle domain from influenza virus A/Puerto Rico/8/34(H1N1)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.998 Å
Deposited: 2013-09-04
Authors: Tsurumura, T., Yoshida, T., Tsuge, H.
PDB entry 3wi1: P453H/I471T mutant of PB2 middle domain from influenza virus A/Puerto Rico/8/34(H1N1) with m7GTP
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.931 Å
Deposited: 2013-09-04
Authors: Tsurumura, T., Yoshida, T., Tsuge, H.
PDB entry 3wi2: Crystal structure of PDE10A in complex with inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2013-09-04
Authors: Amano, Y.
PDB entry 3wi3: Crystal Structure of the Sld3/Treslin domain from yeast Sld3
Classification: REPLICATION REGULATOR
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-09-05
Authors: Itou, H., Araki, H., Shirakihara, Y.
PDB entry 3wi4: Crystal structure of wild-type PorB from Neisseria meningitidis serogroup B
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2013-09-05
Authors: Kattner, C., Toussi, D., Wetzler, L.M., Ruppel, N., Massari, P., Tanabe, M.
PDB entry 3wi5: Crystal structure of the Loop 7 mutant PorB from Neisseria meningitidis serogroup B
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-09-05
Authors: Kattner, C., Toussi, D., Wetzler, L.M., Ruppel, N., Massari, P., Tanabe, M.
PDB entry 3wi6: Crystal structure of MAPKAP Kinase-2 (MK2) in complex with non-selective inhibitor
Classification: Transferase/Transferase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2013-09-06
Authors: Fujino, A., Fukushima, K., Kubota, T., Matsumoto, Y., Takimoto-Kamimura, M.
PDB entry 3wi7: Crystal Structure of the Novel Haloalkane Dehalogenase DatA from Agrobacterium tumefaciens C58
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-09-06
Authors: Guan, L.J., Yabuki, H., Okai, M., Ohtsuka, J., Tanokura, M.
PDB entry 3wi8: Crystal structure of horse heart myoglobin reconstituted with manganese porphycene
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-09-09
Authors: Mizohata, E., Oohora, K., Kihira, Y., Inoue, T., Hayashi, T.
PDB entry 3wi9: Crystal structure of copper nitrite reductase from Geobacillus kaustophilus
Classification: OXIDOREDUCTASE
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2013-09-09
Authors: Fukuda, Y., Nojiri, M.
PDB entry 3wia: Crystal structure of the N-terminal 1-37 residues deleted mutant of Geobacillus copper nitrite reductase
Classification: OXIDOREDUCTASE
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2013-09-09
Authors: Fukuda, Y., Nojiri, M.
PDB entry 3wib: Crystal structure of Y109W Mutant Haloalkane Dehalogenase DatA from Agrobacterium tumefaciens C58
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2013-09-09
Authors: Guan, L.J., Yabuki, H., Okai, M., Ohtsuka, J., Tanokura, M.
PDB entry 3wic: Structure of a substrate/cofactor-unbound glucose dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-09-10
Authors: Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.
PDB entry 3wid: Structure of a glucose dehydrogenase T277F mutant in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2013-09-10
Authors: Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.
PDB entry 3wie: Structure of a glucose dehydrogenase T277F mutant in complex with D-glucose and NAADP
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2013-09-10
Authors: Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.
PDB entry 3wif: Crystal structure of anti-prostaglandin E2 Fab fragment 9Cl-PGF2beta complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-09-12
Authors: Sugahara, M., Ago, H., Saino, H., Miyano, M.
PDB entry 3wig: Human MEK1 kinase in complex with CH5126766 and MgAMP-PNP
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2013-09-12
Authors: Lukacs, C.M., Janson, C., Schuck, V.
PDB entry 3wih: Crystal structure of the third fibronectin domain (Fn3) of human ROBO1 in complex with the Fab fragment of murine monoclonal antibody B2212A.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.701 Å
Deposited: 2013-09-12
Authors: Nakayama, T., Mizohata, E., Yamashita, T., Nagatoishi, M., Iwanari, H., Mochizuki, Y., Kado, Y., Yokota, Y., Sato, R., Tsumoto, K., Fujitani, H., Kodama, T., Hamakubo, T., Inoue, T.
PDB entry 3wii: Crystal structure of the Fab fragment of B2212A, a murine monoclonal antibody specific for the third fibronectin domain (Fn3) of human ROBO1.
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2013-09-12
Authors: Nakayama, T., Mizohata, E., Yamashita, T., Nagatoishi, S., Nakakido, M., Iwanari, H., Mochizuki, Y., Kado, Y., Yokota, Y., Sato, R., Tsumoto, K., Fujitani, H., Kodama, T., Hamakubo, T., Inoue, T.
PDB entry 3wij: Crystal structure of a plant class V chitinase mutant from Cycas revoluta in complex with (GlcNAc)3
Classification: HYDROLASE
Source organism: Cycas revoluta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2013-09-13
Authors: Numata, T., Osawa, T., Umemoto, N., Ohnuma, T., Fukamizo, T.
PDB entry 3wik: Crystal structure of the CK2alpha/compound10 complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.995 Å
Deposited: 2013-09-18
Authors: Kinoshita, T., Nakaniwa, T., Sekiguchi, Y., Nakanishi, I.
PDB entry 3wil: Crystal structure of the CK2alpha/compound3 complex
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2013-09-18
Authors: Kinoshita, T., Nakanishi, I.
PDB entry 3wim: GABARAP-LIR peptide complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-09-19
Authors: Lystad, A., Ichimura, Y., Takagi, K., Yang, Y., Pankiv, S., Mizushima, T., Komatsu, M., Simonsen, A.
PDB entry 3win: Clostridium botulinum Hemagglutinin
Classification: TOXIN
Source organism: Clostridium botulinum B
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2013-09-19
Authors: Amatsu, S., Sugawara, Y., Matsumura, T., Fujinaga, Y., Kitadokoro, K.
PDB entry 3wio: Crystal structure of OSD14 in complex with hydroxy D-ring
Classification: HYDROLASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2013-09-22
Authors: Xue, Y.-L., Miyakawa, T., Hou, F., Qin, H.-M., Tanokura, M.
PDB entry 3wip: Crystal structure of acetylcholine bound to Ls-AChBP
Classification: ACETYLCHOLINE-BINDING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-09-24
Authors: Olsen, J.A., Balle, T., Gajhede, M., Ahring, P.K., Kastrup, J.S.
PDB entry 3wiq: Crystal structure of kojibiose phosphorylase complexed with kojibiose
Classification: TRANSFERASE
Source organism: Caldicellulosiruptor saccharolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-09-24
Authors: Okada, S., Yamamoto, T., Watanabe, H., Nishimoto, T., Chaen, H., Fukuda, S., Wakagi, T., Fushinobu, S.
PDB entry 3wir: Crystal structure of kojibiose phosphorylase complexed with glucose
Classification: TRANSFERASE
Source organism: Caldicellulosiruptor saccharolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2013-09-24
Authors: Okada, S., Yamamoto, T., Watanabe, H., Nishimoto, T., Chaen, H., Fukuda, S., Wakagi, T., Fushinobu, S.
PDB entry 3wis: Crystal structure of Burkholderia xenovorans DmrB in complex with FMN: A Cubic Protein Cage for Redox Transfer
Classification: OXIDOREDUCTASE
Source organism: Burkholderia xenovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2013-09-25
Authors: Bobik, T.A., Cascio, D., Jorda, J., McNamara, D.E., Bustos, C., Wang, T.C., Rasche, M.E., Yeates, T.O.
PDB entry 3wit: Crystal structure of the C-terminal region of VgrG1 from E. coli O157 EDL933
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2013-09-25
Authors: Uchida, K., Leiman, P.G., Arisaka, F., Kanamaru, S.
PDB entry 3wiu: Crystal structure of Pro-S324A/L349A
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-09-25
Authors: Uehara, R., Angkawidjaja, C., Koga, Y., Kanaya, S.
PDB entry 3wiv: Crystal structure of Pro-S324A/D356A
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-09-25
Authors: Uehara, R., Angkawidjaja, C., Koga, Y., Kanaya, S.
PDB entry 3wiw: Crystal structure of unsaturated glucuronyl hydrolase specific for heparin
Classification: HYDROLASE
Source organism: Pedobacter heparinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2013-09-26
Authors: Nakamichi, Y., Mikami, B., Murata, K., Hashimoto, W.
PDB entry 3wix: Crystal structure of Mcl-1 in complex with compound 4
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-09-26
Authors: Sogabe, S., Igaki, S., Hayano, Y.
PDB entry 3wiy: Crystal structure of Mcl-1 in complex with compound 10
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2013-09-26
Authors: Sogabe, S., Igaki, S., Hayano, Y.
PDB entry 3wiz: Crystal structure of Bcl-xL in complex with compound 10
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2013-09-26
Authors: Sogabe, S., Igaki, S., Hayano, Y.
PDB entry 3wj1: Crystal structure of SSHESTI
Classification: HYDROLASE
Source organism: Sulfolobus shibatae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2013-10-03
Authors: Ohara, K., Unno, H., Oshima, Y., Furukawa, K., Fujino, N., Hirooka, K., Hemmi, H., Takahashi, S., Nishino, T., Kusunoki, M., Nakayama, T.
PDB entry 3wj2: Crystal structure of ESTFA (FE-lacking apo form)
Classification: HYDROLASE
Source organism: Ferroplasma acidiphilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2013-10-03
Authors: Ohara, K., Unno, H., Oshima, Y., Furukawa, K., Fujino, N., Hirooka, K., Hemmi, H., Takahashi, S., Nishino, T., Kusunoki, M., Nakayama, T.
PDB entry 3wj4: Crystal structure of PPARgamma ligand binding domain in complex with tributyltin
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2013-10-04
Authors: Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
PDB entry 3wj5: Crystal structure of PPARgamma ligand binding domain in complex with triphenyltin
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2013-10-04
Authors: Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
PDB entry 3wj7: Crystal structure of gox2253
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-10-05
Authors: Yuan, Y.A., Yin, B.
PDB entry 3wj8: Crystal Structure of DL-2-haloacid dehalogenase mutant with 2-bromo-2-methylpropionate
Classification: HYDROLASE
Source organism: Methylobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2013-10-07
Authors: Siwek, A., Omi, R., Hirotsu, K., Jitsumori, K., Esaki, N., Kurihara, T., Paneth, P.
PDB entry 3wj9: Crystal structure of the eukaryotic initiation factor
Classification: TRANSLATION
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.506 Å
Deposited: 2013-10-07
Authors: Kashiwagi, K., Ito, T., Yokoyama, S.
PDB entry 3wja: The crystal structure of human cytosolic NADP(+)-dependent malic enzyme in apo form
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.548 Å
Deposited: 2013-10-08
Authors: Li, S.-Y., Chen, M.-C., Yang, P.-C., Chan, N.-L., Liu, J.-H., Hung, H.-C.
PDB entry 3wjb: Crystal structure of mutant nitrobindin M75L/H76L/Q96C/M148L/H158L (NB4) from Arabidopsis thaliana
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-08
Authors: Mizohata, E., Fukumoto, K., Onoda, A., Bocola, M., Arlt, M., Inoue, T., Schwaneberg, U., Hayashi, T.
PDB entry 3wjc: Crystal structure of mutant nitrobindin M75L/H76L/Q96C/M148L/H158L covalently linked with [Rh(Cp-Mal)(COD)] (NB4-Rh) from Arabidopsis thaliana
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-10-08
Authors: Mizohata, E., Fukumoto, K., Onoda, A., Bocola, M., Arlt, M., Inoue, T., Schwaneberg, U., Hayashi, T.
PDB entry 3wjd: Crystal structure of mutant nitrobindin F44W/M75L/H76L/Q96C/M148L/H158L (NB5) from Arabidopsis thaliana
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2013-10-08
Authors: Mizohata, E., Fukumoto, K., Onoda, A., Bocola, M., Arlt, M., Inoue, T., Schwaneberg, U., Hayashi, T.
PDB entry 3wje: Crystal structure of mutant nitrobindin M75W/H76L/Q96C/M148L/H158L (NB6) from Arabidopsis thaliana
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-10-08
Authors: Mizohata, E., Fukumoto, K., Onoda, A., Bocola, M., Arlt, M., Inoue, T., Schwaneberg, U., Hayashi, T.
PDB entry 3wjf: Crystal structure of mutant nitrobindin M75L/H76L/Q96C/V128W/M148L/H158L (NB9) from Arabidopsis thaliana
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-08
Authors: Mizohata, E., Fukumoto, K., Onoda, A., Bocola, M., Arlt, M., Inoue, T., Schwaneberg, U., Hayashi, T.
PDB entry 3wjg: Crystal structure of mutant nitrobindin M75L/H76L/Q96C/M148W/H158L (NB10) from Arabidopsis thaliana
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2013-10-08
Authors: Mizohata, E., Fukumoto, K., Onoda, A., Bocola, M., Arlt, M., Inoue, T., Schwaneberg, U., Hayashi, T.
PDB entry 3wjj: Crystal structure of IIb selective Fc variant, Fc(P238D), in complex with FcgRIIb
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-10-10
Authors: Kadono, S., Mimoto, F., Katada, H., Igawa, T., Kuramochi, T., Muraoka, M., Wada, Y., Haraya, K., Miyazaki, T., Hattori, K.
PDB entry 3wjk: Crystal structure of Octaprenyl Pyrophosphate synthase from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-11
Authors: Han, X., Chen, C.C., Kuo, C.J., Huang, C.H., Zheng, Y., Ko, T.P., Zhu, Z., Feng, X., Oldfield, E., Liang, P.H., Guo, R.T., Ma, Y.H.
PDB entry 3wjl: Crystal structure of IIb selective Fc variant, Fc(V12), in complex with FcgRIIb
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2013-10-11
Authors: Kadono, S., Mimoto, F., Katada, H., Igawa, T., Kuramochi, T., Muraoka, M., Wada, Y., Haraya, K., Miyazaki, T., Hattori, K.
PDB entry 3wjm: Crystal structure of Bombyx mori Sp2/Sp3 heterohexamer
Classification: OXYGEN TRANSPORT
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-10-11
Authors: Yuan, Y.A., Hou, Y.
PDB entry 3wjn: Crystal structure of Octaprenyl Pyrophosphate synthase from Escherichia coli with farnesyl S-thiol-pyrophosphate (FSPP)
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-10-12
Authors: Han, X., Chen, C.C., Kuo, C.J., Huang, C.H., Zheng, Y., Ko, T.P., Zhu, Z., Feng, X., Oldfield, E., Liang, P.H., Guo, R.T., Ma, Y.H.
PDB entry 3wjo: Crystal structure of Octaprenyl Pyrophosphate synthase from Escherichia coli with isopentenyl pyrophosphate (IPP)
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2013-10-12
Authors: Han, X., Chen, C.C., Kuo, C.J., Huang, C.H., Zheng, Y., Ko, T.P., Zhu, Z., Feng, X., Oldfield, E., Liang, P.H., Guo, R.T., Ma, Y.H.
PDB entry 3wjp: Crystal structure of the HypE CA form
Classification: LYASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.533 Å
Deposited: 2013-10-14
Authors: Tominaga, T., Watanabe, S., Miki, K.
PDB entry 3wjq: Crystal structure of the HypE CN form
Classification: LYASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.645 Å
Deposited: 2013-10-14
Authors: Tominaga, T., Watanabe, S., Miki, K.
PDB entry 3wjr: crystal structure of HypE in complex with a nucleotide
Classification: LYASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.864 Å
Deposited: 2013-10-14
Authors: Tominaga, T., Watanabe, S., Miki, K.
PDB entry 3wjs: Crystal structure of GYE (old yellow enzyme)
Classification: OXIDOREDUCTASE ACTIVATOR
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2013-10-14
Authors: Yuan, Y.A., Yin, B.
PDB entry 3wjt: Crystal structure of the L68D variant of mLolB
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2013-10-16
Authors: Takeda, K., Tokuda, H., Miki, K.
PDB entry 3wju: Crystal structure of the L68D variant of mLolB from Escherichia coli
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-10-16
Authors: Takeda, K., Tokuda, H., Miki, K.
PDB entry 3wjv: Crystal structure of the L68E variant of mLolB
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-10-16
Authors: Takeda, K., Tokuda, H., Miki, K.
PDB entry 3wjw: Wild-type orotidine 5'-monophosphate decarboxylase from M. thermoautotrophicus complexed with 6-methyl-UMP
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2013-10-17
Authors: Fujihashi, M., Kuroda, S., Pai, E.F., Miki, K.
PDB entry 3wjx: Wild-type orotidine 5'-monophosphate decarboxylase from M. thermoautotrophicus complexed with 6-amino-UMP
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2013-10-17
Authors: Fujihashi, M., Kuroda, S., Pai, E.F., Miki, K.
PDB entry 3wjy: Orotidine 5'-monophosphate decarboxylase K72A mutant from M. thermoautotrophicus complexed with 6-amino-UMP
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2013-10-17
Authors: Fujihashi, M., Pai, E.F., Miki, K.
PDB entry 3wjz: Orotidine 5'-monophosphate decarboxylase D75N mutant from M. thermoautotrophicus complexed with 6-amino-UMP
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2013-10-17
Authors: Fujihashi, M., Pai, E.F., Miki, K.
PDB entry 3wk0: Wild-type orotidine 5'-monophosphate decarboxylase from M. thermoautotrophicus complexed with orotidine 5'-monophosphate methyl ester
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2013-10-17
Authors: Fujihashi, M., Pai, E.F., Miki, K.
PDB entry 3wk1: Wild-type orotidine 5'-monophosphate decarboxylase from M. thermoautotrophicus complexed with orotidine 5'-monophosphate ethyl ester
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2013-10-17
Authors: Fujihashi, M., Pai, E.F., Miki, K.
PDB entry 3wk2: Orotidine 5'-monophosphate decarboxylase K72A mutant from M. thermoautotrophicus complexed with orotidine 5'-monophosphate methyl ester
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2013-10-17
Authors: Fujihashi, M., Pai, E.F., Miki, K.
PDB entry 3wk3: Orotidine 5'-monophosphate decarboxylase K72A mutant from M. thermoautotrophicus complexed with orotidine 5'-monophosphate ethyl ester
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2013-10-17
Authors: Fujihashi, M., Pai, E.F., Miki, K.
PDB entry 3wk4: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2013-10-17
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wk5: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2013-10-17
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wk6: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2013-10-17
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wk7: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-17
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wk8: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-17
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wk9: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-18
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wka: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2013-10-18
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wkb: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-18
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wkc: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-18
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wkd: Crystal structure of soluble epoxide hydrolase in complex with fragment inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2013-10-18
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wke: Crystal structure of soluble epoxide hydrolase in complex with t-AUCB
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2013-10-18
Authors: Amano, Y., Yamaguchi, T., Tanabe, E.
PDB entry 3wkf: Crystal structure of cellobiose 2-epimerase
Classification: ISOMERASE
Source organism: Rhodothermus marinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.743 Å
Deposited: 2013-10-21
Authors: Fujiwara, T., Saburi, W., Tanaka, I., Yao, M.
PDB entry 3wkg: Crystal structure of cellobiose 2-epimerase in complex with glucosylmannose
Classification: ISOMERASE
Source organism: Rhodothermus marinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2013-10-21
Authors: Fujiwara, T., Saburi, W., Tanaka, I., Yao, M.
PDB entry 3wkh: Crystal structure of cellobiose 2-epimerase in complex with epilactose
Classification: ISOMERASE
Source organism: Rhodothermus marinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.644 Å
Deposited: 2013-10-21
Authors: Fujiwara, T., Saburi, W., Tanaka, I., Yao, M.
PDB entry 3wki: Crystal structure of cellobiose 2-epimerase in complex with cellobiitol
Classification: ISOMERASE
Source organism: Rhodothermus marinus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.191 Å
Deposited: 2013-10-21
Authors: Fujiwara, T., Saburi, W., Tanaka, I., Yao, M.
PDB entry 3wkj: The nucleosome containing human TSH2B
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-10-22
Authors: Urahama, T., Horikoshi, N., Osakabe, A., Tachiwana, H., Kurumizaka, H.
PDB entry 3wkl: The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus
Classification: HYDROLASE
Source organism: AQUIFEX AEOLICUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-10-28
Authors: Nogi, T., Tabata, S., Tamura-kawakami, K., Takagi, J.
PDB entry 3wkm: The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment
Classification: HYDROLASE
Source organism: Aquifex aeolicus; MUS MUSCULUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-10-28
Authors: Nogi, T., Tabata, S., Tamura-kawakami, K., Takagi, J.
PDB entry 3wkn: Crystal structure of the artificial protein AFFinger p17 (AF.p17) complexed with Fc fragment of human IgG
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2013-10-29
Authors: Watanabe, H., Honda, S.
PDB entry 3wkp: C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2013-10-29
Authors: Fukuda, Y., Inoue, T.
PDB entry 3wkq: Copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with formate
Classification: OXIDOREDUCTASE
Source organism: Geobacillus thermodenitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2013-10-29
Authors: Fukuda, Y., Inoue, T.
PDB entry 3wkr: Crystal structure of the SepCysS-SepCysE complex from Methanocaldococcus jannaschii
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2013-10-30
Authors: Nakazawa, Y., Asano, N., Nakamura, A., Yao, M.
PDB entry 3wks: Crystal structure of the SepCysS-SepCysE N-terminal domain complex from
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.029 Å
Deposited: 2013-10-30
Authors: Nakazawa, Y., Asano, N., Nakamura, A., Yao, M.
PDB entry 3wkt: Complex structure of an open form of NADPH-cytochrome P450 reductase and heme oxygenase-1
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.3 Å
Deposited: 2013-10-31
Authors: Sugishima, M., Sato, H., Higashimoto, Y., Harada, J., Wada, K., Fukuyama, K., Noguchi, M.
PDB entry 3wku: Crystal structure of the anaerobic DesB-gallate complex
Classification: OXIDOREDUCTASE
Source organism: Sphingobium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2013-10-31
Authors: Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
PDB entry 3wkv: Voltage-gated proton channel: VSOP/Hv1 chimeric channel
Classification: PROTON TRANSPORT
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.453 Å
Deposited: 2013-10-31
Authors: Takeshita, K., Sakata, S., Yamashita, E., Fujiwara, Y., Kawanabe, A., Kurokawa, T., Okochi, Y., Matsuda, M., Narita, H., Okamura, Y., Nakagawa, A.
PDB entry 3wkw: Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum ligand free form
Classification: HYDROLASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-11-01
Authors: Ito, T., Saikawa, K., Arakawa, T., Wakagi, T., Fujita, K.
PDB entry 3wkx: Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum arabinose complex form
Classification: HYDROLASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-11-01
Authors: Ito, T., Saikawa, K., Arakawa, T., Wakagi, T., Fujita, K.
PDB entry 3wky: Crystal structure of hemolymph type prophenoloxidase (proPOb) from crustacean
Classification: OXIDOREDUCTASE ACTIVATOR
Source organism: Marsupenaeus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2013-11-02
Authors: Masuda, T., Mikami, B.
PDB entry 3wkz: Crystal Structure of the Ostrinia furnacalis Group I Chitinase catalytic domain E148Q mutant
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2013-11-05
Authors: Chen, L., Liu, T., Zhou, Y., Chen, Q., Shen, X., Yang, Q.