LiteFold/PDB huggingface dataset:
PDB entry 2nv2: Structure of the PLP synthase complex Pdx1/2 (YaaD/E) from Bacillus subtilis
Classification: LYASE/TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2006-11-10
Authors: Strohmeier, M., Tews, I., Sinning, I.
PDB entry 2nv3: Solution structure of L8A mutant of HIV-1 myristoylated matrix protein
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: SOLUTION NMR
Deposited: 2006-11-10
Authors: Saad, J.S., Loeliger, E., Luncsford, P., Liriano, M., Tai, J., Kim, A., Miller, J., Joshi, A., Freed, E.O., Summers, M.F.
PDB entry 2nv4: Crystal structure of UPF0066 protein AF0241 in complex with S-adenosylmethionine. Northeast Structural Genomics Consortium target GR27
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-11-10
Authors: Kuzin, A.P., Abashidze, M., Seetharaman, J., Vorobiev, S.M., Fang, Y., Cunningham, K., Ma, L.C., Xiao, R., Liu, J., Baran, M., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nv5: Crystal structure of a C-terminal phosphatase domain of Rattus norvegicus ortholog of human protein tyrosine phosphatase, receptor type, D (PTPRD)
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-10
Authors: Bonanno, J.B., Gilmore, J., Bain, K.T., Iizuka, M., Xu, W., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 2nv6: Mycobacterium tuberculosis InhA (S94A) bound with INH-NAD adduct
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-11-10
Authors: Wang, F., Sacchettini, J.C.
PDB entry 2nv7: Crystal Structure of Estrogen Receptor Beta Complexed with WAY-555
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-11-10
Authors: Mewshaw, R.E., Bowen, M.S., Harris, H.A., Xu, Z.B., Manas, E.S., Cohn, S.T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2nv9: The X-ray Crystal Structure of the Paramecium bursaria Chlorella virus arginine decarboxylase
Classification: LYASE
Source organism: Paramecium bursaria Chlorella virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2006-11-11
Authors: Shah, R.H., Akella, R., Goldsmith, E., Phillips, M.A.
PDB entry 2nva: The X-ray crystal structure of the Paramecium bursaria Chlorella virus arginine decarboxylase bound to agmatine
Classification: LYASE
Source organism: Paramecium bursaria Chlorella virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-11
Authors: Shah, R.H., Akella, R., Goldsmith, E., Phillips, M.A.
PDB entry 2nvb: Contribution of Pro275 to the Thermostability of the Alcohol Dehydrogenases (ADHs)
Classification: OXIDOREDUCTASE
Source organism: Thermoanaerobacter brockii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-11-12
Authors: Goihberg, E., Tel-Or, S., Peretz, M., Frolow, F., Dym, O., Burstein, Y., Israel Structural Proteomics Center (ISPC)
PDB entry 2nvc: Human Aldose Reductase complexed with novel naphtho[1,2-d]isothiazole acetic acid derivative (3)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-11-12
Authors: Steuber, H., Heine, A., Klebe, G.
PDB entry 2nvd: Human Aldose Reductase complexed with novel naphtho[1,2-d]isothiazole acetic acid derivative (2)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2006-11-12
Authors: Steuber, H., Heine, A., Klebe, G.
PDB entry 2nve: Soluble domain of Rieske Iron Sulfur Protein
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-11-12
Authors: Kolling, D.K., Brunzelle, J.S., Lhee, S., Crofts, A.R., Nair, S.K.
PDB entry 2nvf: Soluble domain of Rieske Iron-Sulfur protein.
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-11-12
Authors: Kolling, D., Brunzelle, J., Lhee, S., Crofts, A.R., Nair, S.K.
PDB entry 2nvg: Soluble domain of Rieske Iron Sulfur protein.
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2006-11-12
Authors: Kolling, D., Brunzelle, J., Lhee, S., Crofts, A.R., Nair, S.K.
PDB entry 2nvh: Determination of Solvent Content in Cavities in Interleukin-1 Using Experimentally-Phased Electron Density
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2006-11-12
Authors: Quillin, M.L., Matthews, B.W.
PDB entry 2nvj: NMR structures of transmembrane segment from subunit a from the yeast proton V-ATPase
Classification: HYDROLASE
Experimental method: SOLUTION NMR
Deposited: 2006-11-13
Authors: Hemminga, M.A., van Mierlo, C.P., Wechselberger, R., de Jong, E.R., Duarte, A.M.
PDB entry 2nvk: Crystal Structure of Thioredoxin Reductase from Drosophila melanogaster
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-13
Authors: Eckenroth, B.E., Rould, M.A., Hondal, R.J., Everse, S.J.
PDB entry 2nvl: Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (sulfonic acid form)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2006-11-13
Authors: Nakamura, T., Yamamoto, T., Abe, M., Matsumura, H., Hagihara, Y., Goto, T., Yamaguchi, T., Inoue, T.
PDB entry 2nvm: Crystal structure of fdxN element excision controlling factor XisI (YP_321976.1) from Anabaena Variabilis ATCC 29413 at 2.19 A resolution
Classification: Structural Genomics/Unknown Function
Source organism: Anabaena variabilis ATCC 29413
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2006-11-13
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 2nvn: Crystal structure of a protein with a cupin-like fold and unknown function (YP_400729.1) from Synechococcus SP. PCC 7942 (Elongatus) at 2.50 A resolution
Classification: Structural Genomics/Unknown function
Source organism: Synechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-13
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 2nvo: Crystal structure of Deinococcus radiodurans RO (RSR) protein
Classification: RNA BINDING PROTEIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2006-11-13
Authors: Ramesh, A., Sacchettini, J.C.
PDB entry 2nvp: X-Ray Crystal Structure of Protein CPF_0428 from Clostridium perfringens. Northeast Structural Genomics Consortium Target CpR63.
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-11-13
Authors: Forouhar, F., Chen, Y., Seetharaman, J., Cunningham, K., Ma, L.-C., Fang, Y., Baran, M.C., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nvq: RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP
Classification: TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-11-13
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2nvt: RNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPP
Classification: TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2006-11-13
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2nvu: Structure of APPBP1-UBA3~NEDD8-NEDD8-MgATP-Ubc12(C111A), a trapped ubiquitin-like protein activation complex
Classification: PROTEIN TURNOVER, LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-11-13
Authors: Huang, D.T., Hunt, H.W., Zhuang, M., Ohi, M.D., Holton, J.M., Schulman, B.A.
PDB entry 2nvv: Crystal Structure of the Putative Acetyl-CoA hydrolase/transferase PG1013 from Porphyromonas gingivalis, Northeast Structural Genomics Target PgR16.
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-11-13
Authors: Forouhar, F., Neely, H., Seetharaman, J., Yong, W., Ho, C.K., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nvw: Crystal sctucture of transcriptional regulator Gal80p from kluyveromymes lactis
Classification: TRANSCRIPTION
Source organism: Kluyveromyces lactis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-11-13
Authors: Thoden, J.B., Sellick, C.A., Reece, R.J., Holden, H.M.
PDB entry 2nvx: RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP
Classification: TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2006-11-13
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2nvy: RNA Polymerase II form II in 150 mM Mn+2
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2006-11-13
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2nvz: RNA Polymerase II elongation complex with UTP, updated 11/2006
Classification: TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.3 Å
Deposited: 2006-11-14
Authors: Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.
PDB entry 2nw0: Crystal structure of a lysin
Classification: HYDROLASE
Source organism: unidentified phage
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-11-14
Authors: Porter, C.J., Buckle, A.M., Whisstock, J.C.
PDB entry 2nw2: Crystal structure of ELS4 TCR at 1.4A
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-11-14
Authors: Tynan, F.E., Reid, H.H., Rossjohn, J.
PDB entry 2nw3: Crystal structure of HLA-B*3508 presenting EBV peptide EPLPQGQLTAY at 1.7A
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-11-14
Authors: Tynan, F.E., Reid, H.H., Rossjohn, J.
PDB entry 2nw4: Crystal Structure of the Rat Androgen Receptor Ligand Binding Domain Complex with BMS-564929
Classification: HORMONE/GROWTH FACTOR
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-11-14
Authors: Ostrowski, J., Kuhns, J.E., Lupisella, J.A., Manfredi, M.C., Beehler, B.C., Krystek, S.R., Bi, Y., Sun, C., Seethala, R., Golla, R., Sleph, P.G., Fura, A., An, Y., Kish, K.F., Sack, J.S., Mookhtiar, K.A., Grover, G.J., Hamann, L.G.
PDB entry 2nw6: Burkholderia cepacia lipase complexed with S-inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Burkholderia cepacia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-14
Authors: Luic, M., Stefanic, Z.
PDB entry 2nw7: Crystal Structure of Tryptophan 2,3-dioxygenase (TDO) from Xanthomonas campestris in complex with ferric heme. Northeast Structural Genomics Target XcR13
Classification: OXIDOREDUCTASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-11-14
Authors: Forouhar, F., Anderson, J.L.R., Mowat, C.G., Hussain, A., Bruckmann, C., Thackray, S.J., Seetharaman, J., Tucker, T., Ho, C.K., Ma, L.C., Cunningham, K., Janjua, H., Zhao, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Chapman, S.K., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nw8: Crystal Structure of Tryptophan 2,3-dioxygenase (TDO) from Xanthomonas campestris in complex with ferrous heme and tryptophan. Northeast Structural Genomics Target XcR13.
Classification: OXIDOREDUCTASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-11-14
Authors: Forouhar, F., Anderson, J.L.R., Mowat, C.G., Bruckmann, C., Thackray, S.J., Seetharaman, J., Ho, C.K., Ma, L.C., Cunningham, K., Janjua, H., Zhao, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Champman, S.K., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nw9: Crystal Structure of Tryptophan 2,3-dioxygenase (TDO) from Xanthomonas campestris in complex with ferrous heme and 6-fluoro-tryptophan. Northeast Structural Genomics Target XcR13
Classification: OXIDOREDUCTASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-14
Authors: Forouhar, F., Anderson, J.L.R., Mowat, C.G., Bruckmann, C., Thackray, S.J., Seetharaman, J., Ho, C.K., Ma, L.C., Cunningham, K., Janjua, H., Zhao, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Champman, S.K., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nwa: X-ray Crystal Structure of Protein ytmB from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR466
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-11-14
Authors: Zhou, W., Forouhar, F., Seetharaman, J., Wang, D., Cunningham, K., Ma, L.-C., Fang, Y., Xiao, R., Baran, M.C., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nwb: Crystal Structure of a Putative 2,3-dioxygenase (SO4414) from Shewanella oneidensis in complex with ferric heme. Northeast Structural Genomics Target SoR52.
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-14
Authors: Forouhar, F., Anderson, J.L.R., Mowat, C.G., Hussain, A., Seetharaman, J., Bruckmann, C., Thackray, S.J., Khan, N., Cunningham, K., Janjua, H., Zhao, L., Xiao, R., Ma, L.C., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Champman, S.K., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nwc: A 3.02 angstrom crystal structure of wild-type apo GroEL in a monoclinic space group
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2006-11-14
Authors: Kiser, P.D., Lodowski, D.T., Palczewski, K.
PDB entry 2nwd: Structure of chemically synthesized human lysozyme at 1 Angstrom resolution
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2006-11-14
Authors: Durek, T., Torbeev, V.Y., Kent, S.B.H.
PDB entry 2nwf: Soluble domain of Rieske Iron Sulfur Protein
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2006-11-14
Authors: Kolling, D., Brunzelle, J.S., Lhee, S., Crofts, A.R., Nair, S.K.
PDB entry 2nwg: Structure of CXCL12:heparin disaccharide complex
Classification: CYTOKINE,SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2006-11-14
Authors: Murphy, J.W., Cho, Y., Lolis, E.
PDB entry 2nwh: Carbohydrate kinase from Agrobacterium tumefaciens
Classification: SIGNALING PROTEIN,TRANSFERASE
Source organism: Agrobacterium tumefaciens str.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2006-11-14
Authors: Osipiuk, J., Xu, X., Gu, J., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 2nwi: Crystal structure of protein AF1396 from Archaeoglobus fulgidus, Pfam DUF98
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-11-14
Authors: Bonanno, J.B., Dickey, M., Bain, K.T., Adams, J., Sridhar, V., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 2nwj: Structure of the complex of C-terminal lobe of bovine lactoferrin with disaccharide at 1.75 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-11-15
Authors: Singh, N., Sharma, S., Perbandt, M., Kaur, P., Betzel, C., Singh, T.P.
PDB entry 2nwl: Crystal structure of GltPh in complex with L-Asp
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2006-11-15
Authors: Gouaux, E., Boudker, O., Ryan, R., Yernool, D., Shimamoto, K.
PDB entry 2nwm: Solution structure of the first SH3 domain of human Vinexin and its interaction with the peptides from Vinculin
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-11-15
Authors: Zhang, J., Yao, B., Wu, J., Shi, Y.
PDB entry 2nwn: New Pharmacophore for Serine Protease Inhibition Revealed by Crystal Structure of Human Urokinase-type Plasminogen Activator Complexed with a Cyclic Peptidyl Inhibitor, upain-1
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2006-11-16
Authors: Zhao, G., Yuan, C., Wind, T., Andreasen, P.A., Huang, Z., Huang, M., Structural Genomics Consortium (SGC)
PDB entry 2nwo: Structural and kinetic effect of hydrophobic mutations in the active site of human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-11-16
Authors: Fisher, S.Z., McKenna, R.
PDB entry 2nwp: Structural and kinetic effects of hydrophobic mutations in the active site of human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-16
Authors: Fisher, S.Z., McKenna, R.
PDB entry 2nwq: Short chain dehydrogenase from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-11-16
Authors: McGrath, T.E., Kimber, M.S., Beattie, B., Thambipillai, D., Dharamsi, A., Virag, C., Nethery-Brokx, K., Edwards, A.M., Pai, E.F., Chirgadze, N.Y.
PDB entry 2nwr: Crystal structure of C11N mutant of KDO8P Synthase in complex with PEP
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-11-16
Authors: Kona, F., Xu, X., Martin, P., Kuzmic, P., Gatti, D.L.
PDB entry 2nws: Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-16
Authors: Kona, F., Xu, X., Martin, P., Kuzmic, P., Gatti, D.L.
PDB entry 2nwt: NMR Structure of Protein UPF0165 protein AF_2212 from Archaeoglobus Fulgidus; Northeast Structural Genomics Consortium Target GR83
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Archaeoglobus fulgidus
Experimental method: SOLUTION NMR
Deposited: 2006-11-16
Authors: Singarapu, K.K., Sukumaran, D.K., Parish, D., Atreya, H.S., Liu, G., Eletsky, A., Chen, C.X., Jiang, M., Cunningham, K., Xiao, R., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nwu: Crystal structure of protein SSO1042 from Sulfolobus solfataricus, Pfam DUF54
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Sulfolobus solfataricus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-16
Authors: Rao, K.N., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 2nwv: Crystal structure of XisI protein-like (YP_323822.1) from Anabaena Variabilis ATCC 29413 at 1.85 A resolution
Classification: Structural Genomics/Unknown Function
Source organism: Anabaena variabilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2006-11-16
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 2nww: Crystal structure of GltPh in complex with TBOA
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-11-16
Authors: Gouaux, E., Boudker, O., Ryan, R., Yernool, D., Shimamoto, K.
PDB entry 2nwx: Crystal structure of GltPh in complex with L-aspartate and sodium ions
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2006-11-16
Authors: Gouaux, E., Boudker, O., Ryan, R., Yernool, D., Shimamoto, K.
PDB entry 2nwy: Structural and kinetic effects of hydrophobic mutations on the active site of human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-11-16
Authors: Fisher, S.Z., McKenna, R.
PDB entry 2nwz: Structural and kinetic effects of hydrophobic mutations on the active site of human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-16
Authors: Fisher, S.Z., McKenna, R.
PDB entry 2nx0: Ferrous nitrosyl blackfin tuna myoglobin
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Thunnus atlanticus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2006-11-16
Authors: Schreiter, E.R., Rodriguez, M.M., Weichsel, A., Montfort, W.R., Bonaventura, J.
PDB entry 2nx1: Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-16
Authors: Kona, F., Xu, X., Martin, P., Kuzmic, P., Gatti, D.L.
PDB entry 2nx2: Crystal structure of protein ypsA from Bacillus subtilis, Pfam DUF1273
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-16
Authors: Ramagopal, U.A., Alvarado, J., Dickey, M., Reyes, C., Toro, R., Bain, K., Gheyi, T., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 2nx3: Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-11-16
Authors: Kona, F., Xu, X., Martin, P., Kuzmic, P., Gatti, D.L.
PDB entry 2nx4: The Crystal Structure of athe Putative TetR-family transcriptional regulator Rha06780 from Rhodococcus sp. Rha1.
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Rhodococcus sp. RHA1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-11-16
Authors: Zhang, R., Evdokimova, E., Kudritskam, M., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 2nx5: Crystal structure of ELS4 TCR bound to HLA-B*3501 presenting EBV peptide EPLPQGQLTAY at 1.7A
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-11-16
Authors: Tynan, F.E., Reid, H.H., Rossjohn, J.
PDB entry 2nx6: Structure of NOWA cysteine rich domain 6
Classification: STRUCTURAL PROTEIN
Source organism: Hydra vulgaris
Experimental method: SOLUTION NMR
Deposited: 2006-11-17
Authors: Meier, S., Jensen, P.R., Adamczyk, P., Bachinger, H.P., Holstein, T.W., Engel, J., Ozbek, S., Grzesiek, S.
PDB entry 2nx7: Structure of NOWA cysteine rich domain 8
Classification: STRUCTURAL PROTEIN
Source organism: Hydra vulgaris
Experimental method: SOLUTION NMR
Deposited: 2006-11-17
Authors: Meier, S., Jensen, P.R., Adamczyk, P., Bachinger, H.P., Holstein, T.W., Engel, J., Ozbek, S., Grzesiek, S.
PDB entry 2nx8: The crystal structure of the tRNA-specific adenosine deaminase from Streptococcus pyogenes
Classification: HYDROLASE
Source organism: Streptococcus pyogenes serotype M6
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-17
Authors: Hwang, K.Y., Lee, W.-H., Kim, Y.K.
PDB entry 2nx9: Crystal structure of the carboxyltransferase domain of the oxaloacetate decarboxylase Na+ pump from Vibrio cholerae
Classification: LYASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-11-17
Authors: Studer, R., Dimroth, P.
PDB entry 2nxa: Structure of Zn-dependent Metallo-Beta-Lactamase from Bacillus Cereus R121H, C221D Double Mutant
Classification: HYDROLASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2006-11-17
Authors: Medrano Martin, F.J., Vila, A.J., Gonzalez, J.M.
PDB entry 2nxb: Crystal structure of human Bromodomain containing protein 3 (BRD3)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-11-17
Authors: Filippakopoulos, P., Bullock, A., Cooper, C., Keates, K., Berridge, G., Pike, A., Bunkoczi, G., Edwards, A., Arrowsmith, C., Sundstrom, M., von Delft, F., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 2nxc: Apo-form of T. thermophilus ribosomal protein L11 methyltransferase (PrmA)
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2006-11-17
Authors: Demirci, H., Gregory, S.T., Dahlberg, A.E., Jogl, G.
PDB entry 2nxd: Structure of HIV-1 protease D25N complexed with rt-rh analogue peptide GLY-ALA-ASP-ILE-PHE*TYR-LEU-ASP-GLY-ALA
Classification: HYDROLASE/HYDROLASE SUBSTRATE
Source organism: HIV-1 M:B_ARV2/SF2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-17
Authors: Prabu-Jeyabalan, M., Nalivaika, E., Schiffer, C.A.
PDB entry 2nxe: T. thermophilus ribosomal protein L11 methyltransferase (PrmA) in complex with S-Adenosyl-L-Methionine
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2006-11-17
Authors: Demirci, H., Gregory, S.T., Dahlberg, A.E., Jogl, G.
PDB entry 2nxf: Crystal Structure of a dimetal phosphatase from Danio rerio LOC 393393
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-11-17
Authors: Bitto, E., Wesenberg, G.E., Phillips Jr., G.N., McCoy, J.G., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)
PDB entry 2nxg: Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase.
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2006-11-17
Authors: Kona, F., Xu, X., Martin, P., Kuzmic, P., Gatti, D.L.
PDB entry 2nxh: Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase.
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2006-11-17
Authors: Kona, F., Xu, X., Martin, P., Kuzmic, P., Gatti, D.L.
PDB entry 2nxi: Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase.
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-11-17
Authors: Kona, F., Xu, X., Martin, P., Kuzmic, P., Gatti, D.L.
PDB entry 2nxj: T.thermophilus ribosomal protein L11 methyltransferase (PrmA) in space group P 21 21 2
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-11-17
Authors: Demirci, H., Gregory, S.T., Dahlberg, A.E., Jogl, G.
PDB entry 2nxl: Structure of HIV-1 protease D25N complexed with the rt-rh analogue peptide GLY-ALA-GLU-VAL-PHE*TYR-VAL-ASP-GLY-ALA
Classification: HYDROLASE/HYDROLASE SUBSTRATE
Source organism: HIV-1 M:B_ARV2/SF2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-17
Authors: Prabu-Jeyabalan, M., Nalivaika, E., Schiffer, C.A.
PDB entry 2nxm: Structure of HIV-1 protease D25N complexed with the rt-rh analogue peptide GLY-ALA-GLN-THR-PHE*TYR-VAL-ASP-GLY-ALA
Classification: HYDROLASE/HYDROLASE SUBSTRATE
Source organism: HIV-1 M:B_ARV2/SF2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-11-17
Authors: Prabu-Jeyabalan, M., Nalivaika, E., Schiffer, C.A.
PDB entry 2nxn: T. thermophilus ribosomal protein L11 methyltransferase (PrmA) in complex with ribosomal protein L11
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-17
Authors: Demirci, H., Gregory, S.T., Dahlberg, A.E., Jogl, G.
PDB entry 2nxo: Crystal structure of protein SCO4506 from Streptomyces coelicolor, Pfam DUF178
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2006-11-17
Authors: Tyagi, R., Eswaramoorthy, S., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 2nxp: Structure of NTD2 domain of the human TAF5 subunit of TFIID
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2006-11-17
Authors: Bhattacharya, S., Takada, S., Jacobson, R.H.
PDB entry 2nxq: Crystal structure of calcium binding protein 1 from Entamoeba histolytica: a novel arrangement of EF hand motifs
Classification: METAL BINDING PROTEIN
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-18
Authors: Kumar, S., Padhan, N., Alam, N., Gourinath, S.
PDB entry 2nxr: Structural effects of hydrophobic mutations on the active site of human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-11-19
Authors: Fisher, S.Z., McKenna, R.
PDB entry 2nxs: Structural and kinetic effects of hydrophobic mutations in the active site of human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-19
Authors: Fisher, S.Z., McKenna, R.
PDB entry 2nxt: Structural and kinetic effects of hydrophobic mutations in the active site of human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2006-11-19
Authors: Fisher, S.Z., McKenna, R.
PDB entry 2nxu: Atomic structure of translation initiation factor aIF2 beta-subunit from Archaebacteria sulfolobus solfataricus: high resolution NMR in solution
Classification: TRANSLATION
Source organism: Sulfolobus solfataricus
Experimental method: SOLUTION NMR
Deposited: 2006-11-20
Authors: Vasile, F., Pechkova, E., Stolboushkina, E., Garber, M., Nicolini, C.
PDB entry 2nxv: Structure of the 6th ORF of the Rhodobacter blastica ATPase operon; Majastridin
Classification: TRANSFERASE
Source organism: Rhodobacter blasticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2006-11-20
Authors: Enroth, C., Strid, A.
PDB entry 2nxw: Crystal structure of phenylpyruvate decarboxylase of Azospirillum brasilense
Classification: LYASE
Source organism: Azospirillum brasilense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-11-20
Authors: Versees, W., Spaepen, S., Vanderleyden, J., Steyaert, J.
PDB entry 2nxx: Crystal Structure of the Ligand-Binding Domains of the T.castaneum (Coleoptera) Heterodimer EcrUSP Bound to Ponasterone A
Classification: HORMONE/GROWTH FACTOR
Source organism: Tribolium castaneum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2006-11-20
Authors: Iwema, T., Billas, I., Moras, D.
PDB entry 2nxy: HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2nxz: HIV-1 gp120 Envelope Glycoprotein (T257S, S334A, S375W) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny0: HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, T257S, V275C, S334A, S375W, A433M) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny1: HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny2: HIV-1 gp120 Envelope Glycoprotein (T123C, T257S, S334A, S375W, G431C) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny3: HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E267C, S334A, S375W) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny4: HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny5: HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny6: HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T123C, T257S, V275C,S334A, S375W, Q428C, G431C) Complexed with CD4 and Antibody 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny7: HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-11-20
Authors: Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
PDB entry 2ny8: NMR structure of antibacterial defensin DEF-AAA from the insect anopheles gambiae
Classification: ANTIMICROBIAL PROTEIN
Source organism: Anopheles gambiae
Experimental method: SOLUTION NMR
Deposited: 2006-11-20
Authors: Landon, C., Barbault, F., Vovelle, F.
PDB entry 2ny9: NMR structure of DEF-ABB, a mutant of anopheles defensin DEF-AAA
Classification: ANTIMICROBIAL PROTEIN
Source organism: Anopheles gambiae
Experimental method: SOLUTION NMR
Deposited: 2006-11-20
Authors: Landon, C., Barbault, F., Vovelle, F.
PDB entry 2nya: Crystal structure of the periplasmic nitrate reductase (NAP) from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-20
Authors: Jepson, B.J.N., Richardson, D.J., Hemmings, A.M.
PDB entry 2nyb: Crystal structure of E.Coli Iron Superoxide Dismutase Q69E at 1.1 Angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2006-11-20
Authors: Porta, J.C., Vahedi-Faridi, A., Borgstahl, G.E.O.
PDB entry 2nyc: Crystal structure of the Bateman2 domain of yeast Snf4
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-11-20
Authors: Rudolph, M.J., Amodeo, G.A., Iram, S., Hong, S., Pirino, G., Carlson, M., Tong, L.
PDB entry 2nyd: Crystal structure of Staphylococcus aureus hypothetical protein SA1388
Classification: UNKNOWN FUNCTION
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-11-20
Authors: Singh, K.S., Zhang, X., Zhang, H.
PDB entry 2nye: Crystal structure of the Bateman2 domain of yeast Snf4
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-20
Authors: Rudolph, M.J., Amodeo, G.A., Iram, S., Hong, S., Pirino, G., Carlson, M., Tong, L.
PDB entry 2nyf: Crystal structure of phenylalanine ammonia-lyase from Nostoc punctiforme
Classification: LYASE
Source organism: Nostoc punctiforme
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-20
Authors: Louie, G.V., Moffitt, M.C., Bowman, M.E., Pence, J., Noel, J.P., Moore, B.S.
PDB entry 2nyg: Crystal structure of YokD protein from Bacillus subtilis
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-11-20
Authors: Madegowda, M., Eswaramoorthy, S., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 2nyh: Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution
Classification: OXIDOREDUCTASE
Source organism: Burkholderia xenovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-11-20
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 2nyi: Crystal Structure of an Unknown Protein from Galdieria sulphuraria
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Galdieria sulphuraria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-11-20
Authors: Bitto, E., Wesenberg, G.E., Phillips Jr., G.N., McCoy, J.G., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)
PDB entry 2nyj: Crystal structure of the ankyrin repeat domain of TRPV1
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-11-20
Authors: Jin, X., Gaudet, R.
PDB entry 2nyk: Crystal structure of m157 from mouse cytomegalovirus
Classification: VIRAL PROTEIN
Source organism: Murid herpesvirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-11-20
Authors: Garcia, K.C.
PDB entry 2nyl: Crystal structure of Protein Phosphatase 2A (PP2A) holoenzyme with the catalytic subunit carboxyl terminus truncated
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2006-11-20
Authors: Xing, Y., Xu, Y., Chen, Y., Chao, Y., Lin, Z., Shi, Y.
PDB entry 2nym: Crystal Structure of Protein Phosphatase 2A (PP2A) with C-terminus truncated catalytic subunit
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2006-11-21
Authors: Chen, Y., Xing, Y., Xu, Y., Chao, Y., Lin, Z., Jeffrey, P.D., Shi, Y.
PDB entry 2nyn: Crystal structure of phenylalanine ammonia-lyase from Anabaena variabilis
Classification: LYASE
Source organism: Anabaena variabilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-11-21
Authors: Louie, G.V., Moffitt, M.C., Bowman, M.E., Pence, J., Noel, J.P., Moore, B.S.
PDB entry 2nyp: Structure of beta-lactamase II from Bacillus cereus. R121H, C221D doble mutant with two zinc ions.
Classification: HYDROLASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2006-11-21
Authors: Medrano Martin, F.J., Vila, A.J., Gonzalez, J.M.
PDB entry 2nyq: Structure of Vibrio proteolyticus aminopeptidase with a bound Trp fragment of dLWCF
Classification: HYDROLASE
Source organism: Vibrio proteolyticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-21
Authors: Bennett, B., Kumar, A., Narayanan, B., Kim, J.-J.
PDB entry 2nyr: Crystal Structure of Human Sirtuin Homolog 5 in Complex with Suramin
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2006-11-21
Authors: Min, J.R., Antoshenko, T., Allali-Hassani, A., Dong, A., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)
PDB entry 2nys: X-ray Crystal Structure of Protein AGR_C_3712 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR88.
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Agrobacterium tumefaciens str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-11-21
Authors: Vorobiev, S.M., Abashidze, M., Seetharaman, J., Zhao, L., Ma, L.C., Cunningham, K., Nwosu, C., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 2nyt: The APOBEC2 Crystal Structure and Functional Implications for AID
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-21
Authors: Prochnow, C., Bransteitter, R., Klein, M., Goodman, M., Chen, X.
PDB entry 2nyu: Crystal Structure of Human FtsJ homolog 2 (E.coli) protein in complex with S-adenosylmethionine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2006-11-21
Authors: Dong, A., Wu, H., Zeng, H., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)
PDB entry 2nyv: X-ray crystal structure of a phosphoglycolate phosphatase from Aquifex aeolicus
Classification: HYDROLASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.103 Å
Deposited: 2006-11-21
Authors: Ciatto, C., Min, T., Gorman, J., Burley, S.K., Shapiro, L., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 2nyx: Crystal structure of RV1404 from Mycobacterium tuberculosis
Classification: TRANSCRIPTION
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-11-21
Authors: Yu, M., Bursey, E.H., Radhakannan, R., Kim, C.-Y., Kaviratne, T., Woodruff, T., Segelke, B.W., Lekin, T., Toppani, D., Terwilliger, T.C., Hung, L.-W., TB Structural Genomics Consortium (TBSGC), Integrated Center for Structure and Function Innovation (ISFI)
PDB entry 2nyy: Crystal structure of botulinum neurotoxin type A complexed with monoclonal antibody CR1
Classification: TOXIN/IMMUNE SYSTEM
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2006-11-21
Authors: Stevens, R.C., Arndt, J.W.
PDB entry 2nyz: Viral Chemokine Binding Protein M3 From Murine Gammaherpesvirus68 In Complex With The C- Chemokine XCL1
Classification: VIRAL PROTEIN/CYTOKINE
Source organism: Murid herpesvirus 4; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-11-21
Authors: Alexander-Brett, J.M., Fremont, D.H.
PDB entry 2nz0: Crystal structure of potassium channel Kv4.3 in complex with its regulatory subunit KChIP1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-11-22
Authors: Wang, H., Yan, Y., Shen, Y., Chen, L., Wang, K.
PDB entry 2nz1: Viral Chemokine Binding Protein M3 From Murine Gammaherpesvirus68 In Complex With The CC-Chemokine CCL2/MCP-1
Classification: VIRAL PROTEIN/CYTOKINE
Source organism: Homo sapiens; Murid herpesvirus 4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-11-22
Authors: Alexander-Brett, J.M., Fremont, D.H.
PDB entry 2nz2: Crystal structure of human argininosuccinate synthase in complex with aspartate and citrulline
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-11-22
Authors: Karlberg, T., Uppenberg, J., Arrowsmith, C., Berglund, H., Busam, R.D., Collins, R., Edwards, A., Ericsson, U.B., Flodin, S., Flores, A., Graslund, S., Hallberg, B.M., Hammarstrom, M., Hogbom, M., Johansson, I., Kotenyova, T., Magnusdottir, A., Moche, M., Nilsson, M.E., Nordlund, P., Nyman, T., Ogg, D., Persson, C., Sagemark, J., Stenmark, P., Sundstrom, M., Thorsell, A.G., Van Den Berg, S., Wallden, K., Weigelt, J., Holmberg-Schiavone, L., Structural Genomics Consortium (SGC)