LiteFold/PDB huggingface dataset:
PDB entry 8y30: Crystal structure of Staphylococcus aureus RecJ protein in complex with Mg2+
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-01-27
Authors: Cheng, K.
PDB entry 8y31: The crystal structure of the QX006N-Fab/IFNAR1-SD123 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2024-01-28
Authors: Li, W., Feng, W.
PDB entry 8y32: BA.2.86-V483 RBD in complex with bACE2
Classification: VIRAL PROTEIN
Source organism: Bos taurus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2024-01-28
Authors: Yue, C., Liu, P.
PDB entry 8y33: A near-infrared fluorescent protein of de novo backbone design
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-01-28
Authors: Hu, X., Xu, Y.
PDB entry 8y34: Cryo-EM structure of anti-phage defense associated DSR2 (H171A) (map2)
Classification: IMMUNE SYSTEM
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2024-01-28
Authors: Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.
PDB entry 8y36: cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.
Classification: RIBOSOME
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-01-28
Authors: Li, Y., Lu, G., Li, J., Pei, X., Lin, J.
PDB entry 8y37: Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
Classification: RIBOSOME
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-01-28
Authors: Li, Y., Lu, G., Li, J., Pei, X., Lin, J.
PDB entry 8y38: Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
Classification: RIBOSOME
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-01-28
Authors: Li, Y., Lu, G., Li, J., Pei, X., Lin, J.
PDB entry 8y39: cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
Classification: RIBOSOME
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-01-28
Authors: Li, Y., Lu, G., Li, J., Pei, X., Lin, J.
PDB entry 8y3c: Cryo-EM structure of the overlapping di-nucleosome (closed form)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.21 Å
Deposited: 2024-01-29
Authors: Tanaka, H., Nishimura, M., Takizawa, Y., Nozawa, K., Ehara, H., Sekine, S., Kurumizaka, H.
PDB entry 8y3d: Cryo-EM structure of the overlapping di-nucleosome (intermediate form2)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2024-01-29
Authors: Tanaka, H., Nishimura, M., Takizawa, Y., Nozawa, K., Ehara, H., Sekine, S., Kurumizaka, H.
PDB entry 8y3e: Cryo-EM structure of the overlapping di-nucleosome (open form)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.32 Å
Deposited: 2024-01-29
Authors: Tanaka, H., Nishimura, M., Takizawa, Y., Nozawa, K., Ehara, H., Sekine, S., Kurumizaka, H.
PDB entry 8y3f: Cryo-EM structure of the overlapping di-nucleosome (intermediate form1)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.54 Å
Deposited: 2024-01-29
Authors: Tanaka, H., Nishimura, M., Takizawa, Y., Nozawa, K., Ehara, H., Sekine, S., Kurumizaka, H.
PDB entry 8y3g: Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 N153Q mutant at 4 deg C
Classification: VIRUS
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-01-29
Authors: Fibriansah, G., Ng, T.S., Lim, X.N., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8y3h: Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 N153Q mutant in complex with human antibody 2D22 Fab at 37 deg C
Classification: VIRUS/IMMUNE SYSTEM
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-29
Authors: Fibriansah, G., Ng, T.S., Lim, X.N., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8y3i: Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 N153Q mutant in complex with human antibody C10 Fab at 37 deg C
Classification: VIRUS/IMMUNE SYSTEM
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-29
Authors: Fibriansah, G., Ng, T.S., Lim, X.N., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8y3j: Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 at 4 deg C
Classification: VIRUS
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-29
Authors: Fibriansah, G., Ng, T.S., Lim, X.N., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8y3k: Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 in complex with human antibody 2D22 Fab at 37 deg C
Classification: VIRUS/IMMUNE SYSTEM
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-01-29
Authors: Fibriansah, G., Ng, T.S., Lim, X.N., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8y3l: Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 in complex with human antibody C10 Fab at 37 deg C
Classification: VIRUS/IMMUNE SYSTEM
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-29
Authors: Fibriansah, G., Ng, T.S., Lim, X.N., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8y3m: Cryo-EM structure of DSR2-DSAD1 complex (cross-linked)
Classification: IMMUNOSUPPRESSANT
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-01-29
Authors: Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.
PDB entry 8y3n: The self-assembled nanotube of CPC46A/Q70C
Classification: VIRAL PROTEIN
Source organism: Emesvirus zinderi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-01-29
Authors: Yang, M., Rao, G., Li, L., Qi, L., Ma, C., Zhang, H., Gong, J., Wei, B., Zhang, X.E., Chen, G., Cao, S., Li, F.
PDB entry 8y3o: ASFV p72 in complex with Fab B1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: African swine fever virus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-01-29
Authors: Wang, X., Fu, W., Yu, Q.
PDB entry 8y3p: ASFV p72 in complex with Fab C9
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: African swine fever virus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2024-01-29
Authors: Wang, X., Fu, W., Yu, Q.
PDB entry 8y3q: ASFV p72 in complex with Fab F11
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: African swine fever virus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-01-29
Authors: Wang, X., Fu, W., Yu, Q.
PDB entry 8y3r: ASFV p72 in complex with Fab H3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: African swine fever virus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2024-01-29
Authors: Wang, X., Fu, W., Yu, Q.
PDB entry 8y3s: Human Keratin 19 head domain segment G28-G38 in solution
Classification: CYTOSOLIC PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-01-29
Authors: Jeong, M., Ji, Y., Kim, J., Lee, C.H.
PDB entry 8y3t: The self-assembled nanotube of CPC46A/Q70H
Classification: VIRAL PROTEIN
Source organism: Emesvirus zinderi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-01-29
Authors: Yang, M., Rao, G., Li, L., Qi, L., Ma, C., Zhang, H., Gong, J., Wei, B., Zhang, X.E., Chen, G., Cao, S., Li, F.
PDB entry 8y3u: Ebola virus glycoprotein in complex with a broadly neutralizing antibody 2G1
Classification: ANTIVIRAL PROTEIN
Source organism: Ebola virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-01-29
Authors: Fan, P.F., Yu, C.M., Chen, W.
PDB entry 8y3v: The self-assembled nanotube of CPC46A/Q70V
Classification: VIRAL PROTEIN
Source organism: Emesvirus zinderi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-01-29
Authors: Yang, M., Rao, G., Li, L., Qi, L., Ma, C., Zhang, H., Gong, J., Wei, B., Zhang, X.E., Chen, G., Cao, S., Li, F.
PDB entry 8y3w: The Cryo-EM structure of anti-phage defense associated DSR2 tetramer bound with two DSAD1 inhibitors (same side)
Classification: IMMUNOSUPPRESSANT
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-01-29
Authors: Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.
PDB entry 8y3x: Cell divisome sPG hydrolysis machinery FtsEX-EnvC
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2024-01-29
Authors: Zhang, Z., Dong, H., Chen, Y.
PDB entry 8y3y: The Cryo-EM structure of anti-phage defense associated DSR2 tetramer bound with two DSAD1 inhibitors (opposite side)
Classification: IMMUNOSUPPRESSANT
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-01-29
Authors: Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.
PDB entry 8y3z: VcFadRqm, Genetically engineered mutants of Vibrio cholerae fadR, in Complex with DNA
Classification: DNA BINDING PROTEIN
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-29
Authors: Tsui, W., Shi, W., Ma, J.B.
PDB entry 8y40: Structure of chimeric RyR-I4657M/G4819E complex with chlorantraniliprole
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-01-29
Authors: Lin, L., Wang, C., Wang, W., Jiang, H., Yuchi, Z.
PDB entry 8y41: VcFadRqm, mutant protein of Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with oleoyl-CoA
Classification: DNA
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-01-30
Authors: Tsui, W., Shi, W.
PDB entry 8y42: Crystal structure of SARS-CoV-2 3CL protease (3CLpro) in complex with compound 51
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-01-30
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 8y44: Crystal structure of SARS-CoV-2 3CL protease (3CLpro) in complex with compound 44
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-01-30
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 8y45: Cryo-EM structure of opioid receptor with biased agonist
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-01-30
Authors: Lin, C., Chang, Z.
PDB entry 8y46: Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase bound to L-KDF or L-2,4-DKDF
Classification: OXIDOREDUCTASE
Source organism: Herbaspirillum huttiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2024-01-30
Authors: Akagashi, M., Watanabe, S.
PDB entry 8y47: Crystal Structure of SCAB1 in complex with CKL2
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-30
Authors: Zhang, W., Ye, K.
PDB entry 8y48: Structure of KSHV glycoprotein B
Classification: VIRAL PROTEIN
Source organism: Human herpesvirus 8 strain GK18
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-01-30
Authors: Fang, X.Y., Sun, C., Xie, C., Liu, Z., Zeng, M.S.
PDB entry 8y4a: BA.2.86 S-trimer in complex with Nab XG2v046
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-01-30
Authors: Zhu, Q., Liu, P.
PDB entry 8y4b: Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase bound to L-2,4-DKDF and NADH
Classification: OXIDOREDUCTASE
Source organism: Herbaspirillum huttiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2024-01-30
Authors: Akagashi, M., Watanabe, S.
PDB entry 8y4c: BA.2.86 S-trimer in complex with Nab XGv280
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2024-01-30
Authors: Zhu, Q., Liu, P.
PDB entry 8y4d: Crystal structure of SARS-Cov-2 main protease in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-01-30
Authors: Zhou, X.L., Wang, W.W., Zhang, J., Li, J.
PDB entry 8y4e: Crystal structure of SARS main protease in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-01-30
Authors: Lin, C., Wang, W.W., Zhang, J., Li, J.
PDB entry 8y4f: Crystal structure of HCoV 229E main protease in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Human coronavirus 229E
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-01-30
Authors: Zeng, P., Wang, W.W., Zhang, J., Li, J.
PDB entry 8y4g: Crystal structure of SARS-Cov-2 main protease G15S mutant in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-01-30
Authors: Zeng, P., Wang, W.W., Zhang, J., Li, J.
PDB entry 8y4h: Crystal structure of SARS-Cov-2 main protease K90R mutant in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-01-30
Authors: Guo, L., Wang, W.W., Zhang, J., Li, J.
PDB entry 8y4i: Metal Beta-Lactamase VIM-2 in Complex with MBL inhibitor B7
Classification: METAL BINDING PROTEIN/INHIBITOR
Source organism: Enterobacteriaceae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.935 Å
Deposited: 2024-01-30
Authors: Li, G.-B., Wang, S.-Y.
PDB entry 8y4j: Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase bound to D-KDP
Classification: OXIDOREDUCTASE
Source organism: Herbaspirillum huttiense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2024-01-30
Authors: Akagashi, M., Watanabe, S.
PDB entry 8y4k: Metal Beta-Lactamase VIM-2 in Complex with MBL inhibitor B17
Classification: METAL BINDING PROTEIN/INHIBITOR
Source organism: Enterobacteriaceae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-01-30
Authors: Li, G.-B., Wang, S.-Y.
PDB entry 8y4l: The ACID domain of aMED25
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2024-01-30
Authors: Xiong, Y., Zhu, J., Yang, Y.
PDB entry 8y4m: Metal Beta-Lactamase VIM-2 in Complex with MBL inhibitor B9
Classification: METAL BINDING PROTEIN/INHIBITOR
Source organism: Enterobacteriaceae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.169 Å
Deposited: 2024-01-30
Authors: Li, G.-B., Wang, S.-Y.
PDB entry 8y4u: Crystal structure of a His1 from oryza sativa
Classification: PLANT PROTEIN
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-01-30
Authors: Wang, N., Ma, J.M., Shibing, H., Beibei, Y., He, Z., Dandan, L.
PDB entry 8y4v: Crystal structure of ferric iron-binding protein (FecB) from Vibrio alginolyticus in complex with citrate
Classification: METAL BINDING PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-01-31
Authors: Jiang, J.Y., Lu, P., Nagata, K.
PDB entry 8y4w: Sialic acid bound form of Tripartite ATP-independent Periplasmic (TRAP) transporter from Fusobacterium nucleatum.
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Fusobacterium nucleatum; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-01-31
Authors: Goyal, P., Ramaswamy, S., Vinothkumar, K.R.
PDB entry 8y4x: Apo form of Tripartite ATP-independent Periplasmic (TRAP) transporter from Fusobacterium nucleatum.
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Fusobacterium nucleatum; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-01-31
Authors: Goyal, P., Ramaswamy, S., Vinothkumar, K.R.
PDB entry 8y4y: Crystal structure of ferric iron-binding protein (FecB) from Vibrio alginolyticus in complex with ferric citrate
Classification: METAL BINDING PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2024-01-31
Authors: Jiang, J.Y., Lu, P., Nagata, K.
PDB entry 8y4z: Monomeric HERC5 HECT c-lobe structure in solution
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-01-31
Authors: Dag, C., Lambert, M., Kahraman, K., Lohn, F., Lee, W., Gocenler, O., Guntert, P., Dotsch, V.
PDB entry 8y51: Cryo-EM structure of the BRS3-Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-01-31
Authors: Li, C., Xu, Y., Yin, W., Xu, H.E.
PDB entry 8y52: Cryo-EM structure of the BA1-bound BRS3-Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-01-31
Authors: Li, C., Xu, Y., Yin, W., Xu, H.E.
PDB entry 8y53: Cryo-EM structure of the MK-5046-bound BRS3-Gq complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-01-31
Authors: Li, C., Xu, Y., Yin, W., Xu, H.E.
PDB entry 8y54: Three-dimensional structure of homo-dimer of cystathione beta lyase from lactobacillus delbrueckii(LdPatB)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Lactobacillus delbrueckii subsp. lactis DSM 20072
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-01-31
Authors: Liu, Y., Yang, C.
PDB entry 8y55: Crystal Structure of NAMPT-PF403
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2024-01-31
Authors: Yu, S.S., Liu, Y.B., Li, Y.
PDB entry 8y56: Cryo-EM reveals cholesterol binding in the lysosomal GPCR-like protein LYCHOS
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-01-31
Authors: Zhao, J., Shen, Q.Y., Zhang, Y., Shao, Z.H.
PDB entry 8y57: Anti MDMA antibody 1bB11 complex
Classification: IMMUNE SYSTEM
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-01-31
Authors: Cheon, G., Lee, Y., Lee, S.
PDB entry 8y58: Crystal structure of TRIM21 PRYSPRY (D355A) in complex with acepromazine.
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-01-31
Authors: Lu, P., Cheng, Y., Xue, L., Ren, X., Huang, N., Han, T.
PDB entry 8y59: Crystal structure of TRIM21 PRYSPRY (D355A) in complex with (S)-hydroxyl-acepromazine.
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-01-31
Authors: Lu, P., Cheng, Y., Xue, L., Ren, X., Huang, N., Han, T.
PDB entry 8y5b: Crystal structure of TRIM21 PRYSPRY (D355A) in complex with (R)-hydroxyl-acepromazine.
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-01-31
Authors: Lu, P., Cheng, Y., Xue, L., Ren, X., Huang, N., Han, T.
PDB entry 8y5f: Cryo-EM structure of E.coli spermidine transporter PotABC
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-01-31
Authors: Qiao, Z., Gao, Y.G.
PDB entry 8y5g: Cryo-EM structure of E.coli spermidine transporter PotABC with spermidine
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-31
Authors: Qiao, Z., Gao, Y.G.
PDB entry 8y5h: Cryo-EM structure of E.coli spermidine transporter PotD-PotABC in pre-translocation state
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-31
Authors: Qiao, Z., Gao, Y.G.
PDB entry 8y5i: Cryo-EM structure of E.coli spermidine transporter PotD-PotABC in translocation intermidiate state
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-31
Authors: Qiao, Z., Gao, Y.G.
PDB entry 8y5j: Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-01-31
Authors: Li, L.J., Gu, Y.H., Qi, J.X., Gao, G.F.
PDB entry 8y5k: E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5l: E.coli transcription translation coupling complex in TTC-B state 1 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5m: E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5n: E.coli transcription translation coupling complex in TTC-A state 3 containing mRNA with 21-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5o: E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5p: E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5q: E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5r: E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5s: E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5t: E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 3) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-01-31
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8y5u: human NaS1 intermediate state 1
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-02-01
Authors: Zhang, S.S.
PDB entry 8y5v: GII.4 Sydney PD and 2'-FL
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2024-02-01
Authors: Hansman, G., Tame, J.R.H., Kher, G., Pancera, M.
PDB entry 8y5w: human NaS1 intermediate state 2
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-02-01
Authors: Zhang, S.S.
PDB entry 8y5x: human NaS1 intermediate state 3
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-02-01
Authors: Zhang, S.S.
PDB entry 8y5y: human NaS1 outward state
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-02-01
Authors: Zhang, S.S.
PDB entry 8y5z: human NaS1 inward state
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-02-01
Authors: Zhang, S.S.
PDB entry 8y60: Structural mechanism of human HCN1 hyperpolarization-activated channel inhibition by ivabradine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-02-01
Authors: Che, T., Cheng, X.Y.
PDB entry 8y62: Cryo-EM structure of the C16:0 ceramide-bound FPR2-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-02-01
Authors: Sun, J.P., Jiang, C.T., Kong, W., Yu, X., Cai, K., Guo, L.L.
PDB entry 8y63: Cryo-EM structure of the C20:0 ceramide-bound FPR2-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-02-01
Authors: Sun, J.P., Jiang, C.T., Kong, W., Yu, X., Cai, K., Guo, L.L.
PDB entry 8y64: Crystal structure of open state ferulic acid decarboxylase from Saccharomyces cerevisiae, F397V/I398L/T438P/P441V mutant
Classification: LYASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-02-01
Authors: Feng, Y.B., Song, X., Zhu, X.N.
PDB entry 8y65: Cryo-EM structure of human urate transporter GLUT9 bound to substrate urate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-02-01
Authors: Pan, X.J., Shen, Z.L., Xu, L., Huang, G.X.Y.
PDB entry 8y66: Cryo-EM structure of human urate transporter GLUT9 bound to inhibitor apigenin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-02-01
Authors: Pan, X.J., Shen, Z.L., Xu, L., Huang, G.X.Y.
PDB entry 8y68: the crystal structure of apo CASK-CaMK
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-02-02
Authors: Li, W., Feng, W.
PDB entry 8y69: LGR4-RSPO2-ZNRF3 (2:2:2)
Classification: MEMBRANE PROTEIN
Source organism: Camelus bactrianus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-02-02
Authors: Wang, L., Geng, Y.
PDB entry 8y6a: Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 RBD in complex with human ACE2 and S309 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2024-02-02
Authors: Li, L.J., Gu, Y.H., Qi, J.X., Gao, G.F.
PDB entry 8y6b: Structure of human LGI1-ADAM22 complex in space group P212121
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2024-02-02
Authors: Liu, H., Xu, F.
PDB entry 8y6c: Norovirus GII.10 P domain and 2'-FL (powder)
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-02-02
Authors: Hansman, G., Tame, J.R.H., Kher, G., Pancera, M.
PDB entry 8y6d: Norovirus GII.10 P domain and 2'-FL (tablet)
Classification: VIRAL PROTEIN
Source organism: Norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2024-02-02
Authors: Hansman, G., Tame, J.R.H., Kher, G., Pancera, M.
PDB entry 8y6f: The crystal structure of MMPs cleavable human heavy chain ferritin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-02-02
Authors: Yuan, C., Huang, M.
PDB entry 8y6h: P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2024-02-02
Authors: Hamaguchi-Suzuki, N., Adachi, N., Moriya, T., Kawasaki, M., Suzuki, K., Anzai, N., Senda, T., Murata, T.
PDB entry 8y6i: P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-02-02
Authors: Hamaguchi-Suzuki, N., Adachi, N., Moriya, T., Kawasaki, M., Suzuki, K., Anzai, N., Senda, T., Murata, T.
PDB entry 8y6j: The structure of Oryza sativa HKT1;1
Classification: PLANT PROTEIN
Source organism: Escherichia coli; Oryza sativa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-02-02
Authors: Yang, G.H., Gao, R.
PDB entry 8y6k: Cryo-EM structure of full-length MICAL1 in the autoinhibited state
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2024-02-02
Authors: Niu, F., Wei, Z.
PDB entry 8y6l: Oryza sativa HKT1;5 salt sensitive variant
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Oryza sativa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-02
Authors: Yang, G.H., Gao, R.
PDB entry 8y6m: The structure of Oryza sativa HKT2;1
Classification: PLANT PROTEIN
Source organism: Escherichia coli; Oryza sativa Indica Group x Oryza nivara
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-02-02
Authors: Yang, G.H., Gao, R., Jia, Y.T., Xu, X., Fu, P., Zhou, J.Q.
PDB entry 8y6n: The structure of Oryza sativa HKT1;5 salt tolerant variant
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Oryza sativa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-02
Authors: Yang, G.H., Gao, R.
PDB entry 8y6o: Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part
Classification: SPLICING/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-02-02
Authors: Bai, R., Yuan, M., Zhang, P., Luo, T., Shi, Y., Wan, R.
PDB entry 8y6p: Structure of the auto-inhibited Dark monomer
Classification: APOPTOSIS
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-02-03
Authors: Tian, L., Li, Y., Shi, Y.
PDB entry 8y6q: Structure of the Dark/Dronc complex
Classification: APOPTOSIS
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2024-02-03
Authors: Tian, L., Li, Y., Shi, Y.
PDB entry 8y6t: Chitinase TfeC from Yersinia pseudotuberculosis
Classification: HYDROLASE
Source organism: Yersinia pseudotuberculosis B-6862
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-03
Authors: Cui, R., Li, D.F.
PDB entry 8y6u: Cryo-EM structure of E.coli transcription initiation complex with transcription factor GcvA
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-02-03
Authors: Lin, W., Shi, J.
PDB entry 8y6v: Near-atomic structure of icosahedrally averaged jumbo bacteriophage PhiKZ capsid
Classification: VIRUS
Source organism: Phikzvirus phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-02-03
Authors: Yang, Y., Shao, Q., Guo, M., Han, L., Zhao, X., Wang, A., Li, X., Wang, B., Pan, J., Chen, Z., Fokine, A., Sun, L., Fang, Q.
PDB entry 8y6w: TUG-1375 and 4-CMTB-bound human FFA2 in complex with Gi
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-02-03
Authors: Kugawa, M., Kawakami, K., Kise, R., Kobayashi, K., Kojima, A., Inoue, W., Fukuda, M., Inoue, A., Kato, H.E.
PDB entry 8y6x: Crystal structure of ternary complex of human MR1, ligand #4, and MAIT-TCR A-F7
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-02-03
Authors: Nagae, M., Inuki, S., Yamasaki, S.
PDB entry 8y6y: GLPG0974-bound human FFA2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-02-03
Authors: Kugawa, M., Kawakami, K., Kise, R., Kobayashi, K., Kojima, A., Inoue, W., Fukuda, M., Inoue, A., Kato, H.E.
PDB entry 8y6z: Crystal structure of the Marinitoga sp. Csx1-Crn2 fusion ribonuclease of type III CRISPR
Classification: HYDROLASE
Source organism: Marinitoga sp. 1155
Experimental method: X-RAY DIFFRACTION
Resolution: 3.65 Å
Deposited: 2024-02-03
Authors: Zhang, D., Yuan, C.
PDB entry 8y71: positive allosteric modulator(BMS986187)-bound delta-opioid receptor-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-02-03
Authors: Luo, P., Xu, Y., Wang, Y., Zhuang, Y., Xu, H.E.
PDB entry 8y72: positive allosteric modulator(BMS986122)-bound mu-opioid receptor-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-02-03
Authors: Luo, P., Xu, Y., Wang, Y., Zhuang, Y., Xu, H.E.
PDB entry 8y73: positive allosteric modulator(MPAM-15)-bound mu-opioid receptor-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-02-03
Authors: Luo, P., Xu, Y., Wang, Y., Zhuang, Y., Xu, H.E.
PDB entry 8y74: Crystal structure of 9-mer peptide from H9N2 avian influenza virus in complex with BF2*0201
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-03
Authors: Jia, Y.S., Ma, M.L., Liao, M., Dai, M.M.
PDB entry 8y75: Crystal structure of the CARF-HTH domain of Csx1-Crn2 from Marinitoga sp.
Classification: HYDROLASE
Source organism: Marinitoga sp. 1155
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-02-03
Authors: Zhang, D., Yuan, C., Lin, Z.
PDB entry 8y76: Crystal structure of the SAM domain of L3MBTL3
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-02-04
Authors: Cao, Y., Wang, Z.
PDB entry 8y77: Crystal structure of the complex of SAMD1-SAM and L3MBTL3-SAM domains
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-04
Authors: Cao, Y., Wang, Z.
PDB entry 8y7e: Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U12 snRNP part
Classification: SPLICING/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.66 Å
Deposited: 2024-02-04
Authors: Bai, R., Yuan, M., Zhang, P., Luo, T., Shi, Y., Wan, R.
PDB entry 8y7f: Crystal structure of CARF domain-truncated Csx1-Crn2 from Marinitoga sp.
Classification: HYDROLASE
Source organism: Marinitoga sp. 1155
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2024-02-04
Authors: Zhang, D., Yuan, C., Lin, Z.
PDB entry 8y7g: Crystal structure of the Marinitoga sp. Csx1-Crn2 H495A mutant in complex with cyclic-tetraadenylate (cA4)
Classification: HYDROLASE
Source organism: Marinitoga sp. 1155; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2024-02-04
Authors: Zhang, D., Yuan, C., Lin, Z.
PDB entry 8y7l: Crystal Structure of Nur77 LBD in complex with N-(2'-(4-hydroxypiperidin-1-yl)-[4,4'-bipyridin]-2-yl)cinnamamide
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.683 Å
Deposited: 2024-02-04
Authors: Hong, W.B., Lin, T.W.
PDB entry 8y7m: FluPol-NS2 complex (local refinement)
Classification: PROTEIN BINDING
Source organism: Influenza A virus (A/nt/60/1968(H3N2)); Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-02-04
Authors: Peng, Q., Sun, J.Q.
PDB entry 8y7o: FluPol-NS2 complex (hexamer)
Classification: PROTEIN BINDING
Source organism: Influenza A virus (A/Hong Kong/1/1968(H3N2)); Influenza A virus (A/nt/60/1968(H3N2))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-02-04
Authors: Peng, Q., Sun, J.Q.
PDB entry 8y7p: Crystal structure of human GFOD1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-02-04
Authors: Zhang, T., Shi, J.
PDB entry 8y7r: Crystal structure of a novel ketoreductase from Sphingobacterium siyangense SY1
Classification: OXIDOREDUCTASE
Source organism: Sphingobacterium siyangense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2024-02-05
Authors: Zheng, Z.R., Wei, H.L., Liu, W.D., You, S.
PDB entry 8y7s: Crystal structure of a benzaldehyde lyase mutant M6 from Herbiconiux sp. SALV-R1
Classification: LYASE
Source organism: Herbiconiux sp. SALV-R1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2024-02-05
Authors: Li, Y., Zhang, Y.F., Chen, Y.Y., Liu, W.D., Yao, P.Y., Wu, Q.Q., Zhu, D.M.
PDB entry 8y7t: Crystal structure of SARS-CoV-2 main protease in complex with C2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-02-05
Authors: Zeng, R., Deng, X.Y., Yang, Z.Y., Wang, K., Jiang, Y.Y., Lei, J.
PDB entry 8y7u: Crystal structure of SARS-CoV-2 main protease in complex with C5
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-02-05
Authors: Zeng, R., Deng, X.Y., Yang, Z.Y., Wang, K., Jiang, Y.Y., Lei, J.
PDB entry 8y7v: Crystal structure of CP2c/LSF DNA-binding domain
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-02-05
Authors: Park, J., Lee, S.J., Won, H.S., Lee, S.H., Lee, S.H., Kim, S.J., Lee, S.I.
PDB entry 8y7w: Thymidine Kinase from Staphylococcus aureus(COL strain)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus COL
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-02-05
Authors: Ashraf, A., Pal, R.K., Hassan, M.I.
PDB entry 8y7x: Structure of HCoV-HKU1A spike in the functionally anchored-3up conformation with 3TMPRSS2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus HKU1 (isolate N1)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-02-05
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Liu, X.C., Sun, L., Yang, H.T.
PDB entry 8y7y: Local structure of HCoV-HKU1A spike in complex with TMPRSS2 and glycan
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus HKU1 (isolate N1)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-02-05
Authors: Wang, H.F., Zhang, X., Lu, Y., Liu, X., Sun, L., Yang, H.T.
PDB entry 8y7z: Cryo-EM structure of the monomeric SPARSA gRNA-ssDNA complex
Classification: STRUCTURAL PROTEIN/RNA/DNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-02-05
Authors: Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.
PDB entry 8y80: Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complex
Classification: STRUCTURAL PROTEIN/RNA/DNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-02-05
Authors: Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.
PDB entry 8y81: Structure of the ige-fc bound to its high affinity receptor fc(epsilon)ri
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-02-05
Authors: Du, S., Deng, M.J., Xiao, J.Y.
PDB entry 8y82: Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complex
Classification: STRUCTURAL PROTEIN/RNA/DNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-05
Authors: Zhang, J.T., Cui, N., Wei, X.Y., Jia, N.
PDB entry 8y83: Crystal structure of a ketoreductase from Sphingobacterium siyangense SY1 with co-enzyme
Classification: OXIDOREDUCTASE
Source organism: Sphingobacterium siyangense
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-05
Authors: Zheng, Z.R., Wei, H.L., Liu, W.D., You, S.
PDB entry 8y84: Structure of the high affinity receptor fc(epsilon)ri TM
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-02-05
Authors: Du, S., Deng, M.J., Xiao, J.Y.
PDB entry 8y85: Human AE3 with NaHCO3- and DIDS
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-02-05
Authors: Jian, L., Zhang, Q., Yao, D., Wang, Q., Xia, Y., Qin, A., Cao, Y.
PDB entry 8y86: Human AE3 with NaHCO3-
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-02-06
Authors: Jian, L., Zhang, Q., Yao, D., Cao, Y.
PDB entry 8y87: Structure of HCoV-HKU1C spike in the functionally anchored-1up conformation with 1TMPRSS2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Liu, X.C., Sun, L., Yang, H.T.
PDB entry 8y88: Structure of HCoV-HKU1C spike in the functionally anchored-2up conformation with 2TMPRSS2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus HKU1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Liu, X.C., Sun, L., Yang, H.T.
PDB entry 8y89: Structure of HCoV-HKU1C spike in the functionally anchored-3up conformation with 2TMPRSS2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus HKU1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Wang, H.F., Zhang, X., Liu, X.C., Sun, L., Yang, H.T.
PDB entry 8y8a: Structure of HCoV-HKU1C spike in the functionally anchored-3up conformation with 3TMPRSS2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Liu, X.C., Sun, L., Yang, H.T.
PDB entry 8y8b: Local structure of HCoV-HKU1C spike in complex with TMPRSS2 and glycan
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-02-06
Authors: Wang, H.F., Zhang, X., Lu, Y.C., Liu, X.C., Sun, L., Yang, H.T.
PDB entry 8y8c: Structure of HCoV-HKU1C spike in the inactive-closed conformation
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Sun, L., Yang, H.T.
PDB entry 8y8d: Structure of HCoV-HKU1C spike in the inactive-1up conformation
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Sun, L., Yang, H.T.
PDB entry 8y8e: Structure of HCoV-HKU1C spike in the inactive-2up conformation
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Sun, L., Yang, H.T.
PDB entry 8y8f: Structure of HCoV-HKU1C spike in the glycan-activated-closed conformation
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Sun, L., Yang, H.T.
PDB entry 8y8g: Structure of HCoV-HKU1C spike in the glycan-activated-1up conformation
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Sun, L., Yang, H.T.
PDB entry 8y8h: Structure of HCoV-HKU1C spike in the glycan-activated-2up conformation
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Sun, L., Yang, H.T.