LiteFold/PDB huggingface dataset:
PDB entry 3as1: Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - W275G mutant complex structure with chelerythrine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Vibrio harveyi
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-12-09
Authors: Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.
PDB entry 3as2: Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - W275G mutant complex structure with Propentofylline
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Vibrio harveyi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-12-09
Authors: Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.
PDB entry 3as3: Crystal Structure Analysis of Chitinase A from Vibrio harveyi with novel inhibitors - W275G mutant complex structure with 2-(imidazolin-2-yl)-5-isothiocyanatobenzofuran
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Vibrio harveyi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-12-09
Authors: Pantoom, S., Vetter, I.R., Prinz, H., Suginta, W.
PDB entry 3as4: MamA AMB-1 C2221
Classification: PROTEIN BINDING
Source organism: Magnetospirillum magnetotacticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2010-12-09
Authors: Zeytuni, N., Davidov, G., Zarivach, R.
PDB entry 3as5: MamA AMB-1 P212121
Classification: PROTEIN BINDING
Source organism: Magnetospirillum magnetotacticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-12-10
Authors: Zeytuni, N., Davidov, G., Zarivach, R.
PDB entry 3as8: MamA MSR-1 P41212
Classification: PROTEIN BINDING
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-12-10
Authors: Zeytuni, N., Davidov, G., Zarivach, R.
PDB entry 3asa: Crystal structure of apo-LL-diaminopimelate aminotransferase from Chlamydia trachomatis
Classification: TRANSFERASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2010-12-10
Authors: Watanabe, N., James, M.N.
PDB entry 3asb: Crystal structure of PLP-bound LL-diaminopimelate aminotransferase from Chlamydia trachomatis
Classification: TRANSFERASE
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2010-12-10
Authors: Watanabe, N., James, M.N.
PDB entry 3asd: MamA R50E mutant
Classification: PROTEIN BINDING
Source organism: Magnetospirillum magnetotacticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2010-12-10
Authors: Zeytuni, N., Davidov, G., Zarivach, R.
PDB entry 3ase: Crystal Structure of Zinc myoglobin soaked with Ru3O cluster
Classification: OXYGEN TRANSPORT
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2010-12-11
Authors: Koshiyama, T., Shirai, M., Hikage, T., Tabe, H., Tanaka, K., Kitagawa, S., Ueno, T.
PDB entry 3asf: MamA MSR-1 C2
Classification: PROTEIN BINDING
Source organism: Magnetospirillum gryphiswaldense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2010-12-11
Authors: Zeytuni, N., Davidov, G., Zarivach, R.
PDB entry 3asg: MamA D159K mutant 2
Classification: PROTEIN BINDING
Source organism: Magnetospirillum magnetotacticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2010-12-11
Authors: Zeytuni, N., Levin, M., Davidov, G., Zarivach, R.
PDB entry 3ash: MamA D159K mutant 1
Classification: PROTEIN BINDING
Source organism: Magnetospirillum magnetotacticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2010-12-11
Authors: Zeytuni, N., Levin, M., Davidov, G., Zarivach, R.
PDB entry 3asi: Alpha-Neurexin-1 ectodomain fragment; LNS5-EGF3-LNS6
Classification: CELL ADHESION
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-12-13
Authors: Tanaka, H., Nogi, T., Yasui, N., Takagi, J.
PDB entry 3asj: Crystal structure of homoisocitrate dehydrogenase in complex with a designed inhibitor
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-12-13
Authors: Nango, E., Kumasaka, T., Eguchi, T.
PDB entry 3ask: Structure of UHRF1 in complex with histone tail
Classification: LIGASE/DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.904 Å
Deposited: 2010-12-16
Authors: Arita, K., Sugita, K., Unoki, M., Hamamoto, R., Sekiyama, N., Tochio, H., Ariyoshi, M., Shirakawa, M.
PDB entry 3asl: Structure of UHRF1 in complex with histone tail
Classification: LIGASE/DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2010-12-16
Authors: Arita, K., Sugita, K., Unoki, M., Hamamoto, R., Sekiyama, N., Tochio, H., Ariyoshi, M., Shirakawa, M.
PDB entry 3asm: Crystal structure of Q54A mutant protein of Bst-RNase HIII
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.603 Å
Deposited: 2010-12-16
Authors: Angkawidjaja, C., Kanaya, S.
PDB entry 3asn: Bovine heart cytochrome C oxidase in the fully oxidized state measured at 1.7470 angstrom wavelength
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-12-17
Authors: Suga, M., Yano, N., Muramoto, K., Shinzawa-Itoh, K., Maeda, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 3aso: Bovine heart cytochrome C oxidase in the fully oxidized state measured at 0.9 angstrom wavelength
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-12-17
Authors: Suga, M., Yano, N., Muramoto, K., Shinzawa-Itoh, K., Maeda, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 3asp: Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen
Classification: VIRAL PROTEIN
Source organism: Norwalk-like virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-12-17
Authors: Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.
PDB entry 3asq: Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with H-antigen
Classification: VIRAL PROTEIN
Source organism: Norwalk-like virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-12-17
Authors: Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.
PDB entry 3asr: Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-a
Classification: VIRAL PROTEIN
Source organism: Norwalk-like virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-12-17
Authors: Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.
PDB entry 3ass: Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-b
Classification: VIRAL PROTEIN
Source organism: Norwalk-like virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-12-17
Authors: Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.
PDB entry 3ast: Crystal structure of P domain Q389N mutant from Norovirus Funabashi258 stain in the complex with Lewis-b
Classification: VIRAL PROTEIN
Source organism: Norwalk-like virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2010-12-17
Authors: Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.
PDB entry 3asu: Crystal structure of serine dehydrogenase from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-12-21
Authors: Yamazawa, R., Nakajima, Y., Yoshimoto, T., Ito, K.
PDB entry 3asv: The Closed form of serine dehydrogenase complexed with NADP+
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2010-12-21
Authors: Yamazawa, R., Nakajima, Y., Yoshimoto, T., Ito, K.
PDB entry 3asw: Structural and biochemical characterization of ClfB:ligand interactions
Classification: CELL ADHESION
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-12-22
Authors: Ganesh, V.K.
PDB entry 3asx: Human Squalene synthase in complex with 1-{4-[{4-chloro-2-[(2-chlorophenyl)(hydroxy)methyl]phenyl}(2,2-dimethylpropyl)amino]-4-oxobutanoyl}piperidine-3-carboxylic acid
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-12-22
Authors: Shimizu, H., Suzuki, M., Katakura, S., Yamazaki, K., Higashihashi, N., Ichikawa, M., Yokomizo, A., Itoh, M., Sugita, K., Usui, H.
PDB entry 3asy: ligand-free structure of uridine kinase from thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-12-22
Authors: Tomoike, F., Nakagawa, N., Kuramitsu, S., Masui, R.
PDB entry 3asz: CMP-complex structure of uridine kinase from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2010-12-22
Authors: Tomoike, F., Nakagawa, N., Kuramitsu, S., Masui, R.
PDB entry 3at0: Structural and biochemical characterization of ClfB:ligand interactions
Classification: CELL ADHESION/BLOOD CLOTTING
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-12-23
Authors: Ganesh, V.K.
PDB entry 3at1: CRYSTAL STRUCTURES OF PHOSPHONOACETAMIDE LIGATED T AND PHOSPHONOACETAMIDE AND MALONATE LIGATED R STATES OF ASPARTATE CARBAMOYLTRANSFERASE AT 2.8-ANGSTROMS RESOLUTION AND NEUTRAL PH
Classification: TRANSFERASE (CARBAMOYL-P,ASPARTATE)
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1989-09-22
Authors: Gouaux, J.E., Lipscomb, W.N.
PDB entry 3at2: Crystal structure of CK2alpha
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-12-23
Authors: Kinoshita, T.
PDB entry 3at3: Crystal structure of CK2alpha with pyradine derivative
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-12-23
Authors: Kinoshita, T.
PDB entry 3at4: Crystal structure of CK2alpha with pyradine derivertive
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-12-23
Authors: Kinoshita, T.
PDB entry 3at5: Side-necked turtle (Pleurodira, Chelonia, REPTILIA) hemoglobin: cDNA-derived primary structures and X-ray crystal structures of Hb A
Classification: OXYGEN TRANSPORT
Source organism: Podocnemis unifilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-12-26
Authors: Hasegawa, T., Shishikura, F., Kuwada, T.
PDB entry 3at6: Side-necked turtle (Pleurodira, Chelonia, REPTILIA) hemoglobin: cDNA-derived primary structures and X-ray crystal structures of Hb A
Classification: OXYGEN TRANSPORT
Source organism: Podocnemis unifilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2010-12-26
Authors: Hasegawa, T., Shishikura, F., Kuwada, T.
PDB entry 3at7: Crystal structure of bacterial cell-surface alginate-binding protein Algp7
Classification: STRUCTURAL PROTEIN
Source organism: Sphingomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-12-27
Authors: Maruyama, Y., Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3at8: Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2010-12-28
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3at9: Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride and 10 mM magnesium chloride)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2010-12-28
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3ata: Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride and 10 mM Spermine)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2010-12-28
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3atb: Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM Gadolinium chloride)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2010-12-28
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3atd: Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM Gadolinium chloride and 10 mM magnesium chloride)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2010-12-28
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3ate: Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM praseodymium (III) acetate)
Classification: TRANSPORT PROTEIN
Source organism: mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2010-12-28
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3atf: Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 200 mM Cesium chloride)
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2010-12-28
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3atg: endo-1,3-beta-glucanase from Cellulosimicrobium cellulans
Classification: HYDROLASE
Source organism: Cellulosimicrobium cellulans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2011-01-04
Authors: Tanabe, Y., Pang, Z., Oda, M., Mikami, B.
PDB entry 3ath: Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with four AKGs as substrates and allosteric effectors
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2011-01-05
Authors: Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3ati: Crystal structure of trypsin complexed with (3-methoxyphenyl)methanamine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2011-01-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3atj: HEME LIGAND MUTANT OF RECOMBINANT HORSERADISH PEROXIDASE IN COMPLEX WITH BENZHYDROXAMIC ACID
Classification: OXIDOREDUCTASE
Source organism: Armoracia rusticana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1998-12-16
Authors: Meno, K., White, C.G., Smith, A.T., Gajhede, M.
PDB entry 3atk: Crystal structure of trypsin complexed with cycloheptanamine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2011-01-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3atl: Crystal structure of trypsin complexed with benzamidine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2011-01-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3atm: Crystal structure of trypsin complexed with 2-(1H-indol-3-yl)ethanamine
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2011-01-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3atn: Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2011-01-06
Authors: Ito, L., Shiraki, K., Hasegawa, K., Kumasaka, T.
PDB entry 3ato: Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2011-01-06
Authors: Ito, L., Shiraki, K., Hasegawa, K., Kumasaka, T.
PDB entry 3atp: Structure of the ligand binding domain of the bacterial serine chemoreceptor Tsr with ligand
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2011-01-07
Authors: Tajima, H., Sakuma, M., Homma, K., Kawagishi, I., Imada, K.
PDB entry 3atq: Geranylgeranyl Reductase (GGR) from Sulfolobus acidocaldarius
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus acidocaldarius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2011-01-12
Authors: Sasaki, D., Fujihashi, M., Murakami, M., Yoshimura, T., Hemmi, H., Miki, K.
PDB entry 3atr: Geranylgeranyl Reductase (GGR) from Sulfolobus acidocaldarius co-crystallized with its ligand
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus acidocaldarius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-01-12
Authors: Fujihashi, M., Sasaki, D., Iwata, Y., Yoshimura, T., Hemmi, H., Miki, K.
PDB entry 3ats: Crystal structure of Rv3168
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2011-01-13
Authors: Kim, Y.-G., Kim, S., Nguyen, C.M.T., Kim, K.-J.
PDB entry 3att: Crystal structure of Rv3168 with ATP
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-01-13
Authors: Kim, Y.-G., Kim, S., Nguyen, C.M.T., Kim, K.-J.
PDB entry 3atu: Crystal structure of human Hsp70 NBD in the ADP- and Mg ion-bound state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2011-01-13
Authors: Arakawa, A., Handa, N., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3atv: Crystal structure of human Hsp70 NBD in the ADP-bound and Mg ion-free state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2011-01-13
Authors: Arakawa, A., Handa, N., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3atw: Structure-Based Design, Synthesis, Evaluation of Peptide-mimetic SARS 3CL Protease Inhibitors
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: SARS coronavirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2011-01-20
Authors: Akaji, K., Konno, H., Mitsui, H., Teruya, K., Hattori, Y., Ozaki, T., Kusunoki, M., Sanjho, A.
PDB entry 3aty: Crystal structure of TcOYE
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-01-26
Authors: Yamaguchi, K., Okamoto, N., Tokuoka, K., Sugiyama, S., Uchiyama, N., Matsumura, H., Inaka, K., Urade, Y., Inoue, T.
PDB entry 3atz: Crystal structure of TcOYE with pHBA
Classification: Oxidoreductase/Oxidoreductase inhibitor
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2011-01-26
Authors: Okamoto, N., Yamaguchi, K., Mizohata, E., Tokuoka, K., Uchiyama, N., Sugiyama, S., Matsumura, H., Inaka, K., Urade, Y., Inoue, T.
PDB entry 3au0: Structural and biochemical characterization of ClfB:ligand interactions
Classification: CELL ADHESION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2011-01-28
Authors: Ganesh, V.K., Barbu, E.M., Deivanayagam, C.C.S., Le, B., Anderson, A.S., Matsuka, Y., Lin, S.L., Foster, T.F., Narayana, S.V.L., Hook, M.
PDB entry 3au1: Crystal structure of mouse CD1d in complex with ganglioside GD3
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2011-01-28
Authors: Roisman, L.C., Rossjohn, J.
PDB entry 3au2: DNA polymerase X from Thermus thermophilus HB8 complexed with Ca-dGTP
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2011-01-28
Authors: Nakane, S., Ishikawa, H., Wakamatsu, T., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3au3: Crystal structure of armadillo repeat domain of APC
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-01-28
Authors: Murayama, K., Kato-Murayama, M., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3au4: Structure of the human myosin-X MyTH4-FERM cassette bound to its specific cargo, DCC
Classification: MOTOR PROTEIN/APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-01-28
Authors: Hirano, Y., Hatano, T., Hakoshima, T.
PDB entry 3au5: Structure of the human myosin-X MyTH4-FERM cassette
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2011-01-28
Authors: Hirano, Y., Takahashi, A., Hakoshima, T.
PDB entry 3au6: DNA polymerase X from Thermus thermophilus HB8 ternary complex with primer/template DNA and ddGTP
Classification: TRANSFERASE/DNA
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2011-01-28
Authors: Nakane, S., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3au7: Crystal structure of the ZRD-deleted mutant of TiaS in complex with agmatine
Classification: RNA BINDING PROTEIN
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2011-01-31
Authors: Numata, T., Osawa, T.
PDB entry 3au8: Crystal structure of the ternary complex of an isomerase
Classification: ISOMERASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2011-02-01
Authors: Umeda, T., Tanaka, N., Kusakabe, Y., Nakanishi, M., Kitade, Y., Nakamura, K.T.
PDB entry 3au9: Crystal structure of the quaternary complex-1 of an isomerase
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-02-01
Authors: Umeda, T., Tanaka, N., Kusakabe, Y., Nakanishi, M., Kitade, Y., Nakamura, K.T.
PDB entry 3aua: Crystal structure of the quaternary complex-2 of an isomerase
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2011-02-01
Authors: Umeda, T., Tanaka, N., Kusakabe, Y., Nakanishi, M., Kitade, Y., Nakamura, K.T.
PDB entry 3aub: A simplified BPTI variant stabilized by the A14G and A38V substitutions
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2011-02-03
Authors: Islam, M.M., Kato, A., Khan, M.M.A., Noguchi, K., Yohda, M., Kidokoro, S.I., Kuroda, Y.
PDB entry 3auc: A simplified BPTI variant with poly SER (C5S) amino acid tag at the c-terminus
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2011-02-03
Authors: Islam, M.M., Kato, A., Khan, M.M.A., Noguchi, K., Yohda, M., Kidokoro, S.I., Kuroda, Y.
PDB entry 3aud: Simplified BPTI variant with poly Asn amino acid tag (C5N) at the C-terminus
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.943 Å
Deposited: 2011-02-03
Authors: Islam, M.M., Kato, A., Khan, M.M.A., Noguchi, K., Yohda, M., Kidokoro, S.I., Kuroda, Y.
PDB entry 3aue: A simplified BPTI variant with poly His amino acid tag (C5H) at the C-terminus
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2011-02-03
Authors: Islam, M.M., Kato, A., Khan, M.M.A., Noguchi, K., Yohda, M., Kidokoro, S.I., Kuroda, Y.
PDB entry 3auf: Crystal structure of glycinamide ribonucleotide transformylase 1 from Symbiobacterium toebii
Classification: TRANSFERASE
Source organism: Symbiobacterium toebii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2011-02-03
Authors: Kanagawa, M., Baba, S., Nagira, T., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3aug: A simplified BPTI variant with poly Pro amino acid tag (C5P) at the C-terminus
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.398 Å
Deposited: 2011-02-03
Authors: Islam, M.M., Kato, A., Khan, M.M.A., Noguchi, K., Yohda, M., Kidokoro, S.I., Kuroda, Y.
PDB entry 3auh: A simplified BPTI variant with poly Arg amino acid tag (C3R) at the C-terminus
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2011-02-03
Authors: Islam, M.M., Kato, A., Khan, M.M.A., Noguchi, K., Yohda, M., Kidokoro, S.I., Kuroda, Y.
PDB entry 3aui: A simplified BPTI variant with poly Glu amino acid tag (C3E) at the C-terminus
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.851 Å
Deposited: 2011-02-03
Authors: Islam, M.M., Kato, A., Khan, M.M.A., Noguchi, K., Yohda, M., Kidokoro, S.I., Kuroda, Y.
PDB entry 3auj: Structure of diol dehydratase complexed with glycerol
Classification: LYASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-02-07
Authors: Yamanishi, M., Kinoshita, K., Fukuoka, M., Shibata, T., Tobimatsu, T., Toraya, T.
PDB entry 3auk: Crystal structure of a lipase from Geobacillus sp. SBS-4S
Classification: HYDROLASE
Source organism: Geobacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2011-02-08
Authors: Angkawidjaja, C., Tayyab, M., Rashid, N., Kanaya, S.
PDB entry 3aul: Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2011-02-09
Authors: Hirano, T., Olivier, S., Yagi, M., Takemoto, E., Hiromoto, T., Satoh, T., Mizushima, T., Kato, K.
PDB entry 3aum: Crystal structure of OspA mutant
Classification: MEMBRANE PROTEIN
Source organism: Borrelia burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2011-02-10
Authors: Makabe, K.
PDB entry 3aun: Crystal structure of the rat vitamin D receptor ligand binding domain complexed with YR335 and a synthetic peptide containing the NR2 box of DRIP 205
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2011-02-10
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3auo: DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP
Classification: TRANSFERASE/DNA
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-02-11
Authors: Nakane, S., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3aup: Crystal structure of Basic 7S globulin from soybean
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2011-02-14
Authors: Yoshizawa, T., Shimizu, T., Taichi, M., Nishiuchi, Y., Yamabe, M., Shichijo, N., Unzai, S., Hirano, H., Sato, M., Hashimoto, H.
PDB entry 3auq: Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene type analog of active 14-epi-2alpha-methyl-19-norvitamin D3
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2011-02-15
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3aur: Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene type analog of active 14-epi-2beta-methyl-19-norvitamin D3
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2011-02-15
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3aus: Crystal structure of Bacillus megaterium glucose dehydrogenase 4 in ligand-free form
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-02-16
Authors: Nishioka, T., Yasutake, Y., Nishiya, Y., Tamura, T.
PDB entry 3aut: Crystal structure of Bacillus megaterium glucose dehydrogenase 4 in complex with NADH
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-02-16
Authors: Nishioka, T., Yasutake, Y., Nishiya, Y., Tamura, T.
PDB entry 3auu: Crystal structure of Bacillus megaterium glucose dehydrogenase 4 in complex with D-glucose
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-02-16
Authors: Nishioka, T., Yasutake, Y., Nishiya, Y., Tamura, T.
PDB entry 3auv: Predicting Amino Acid Preferences in the Complementarity Determining Regions of an Antibody-Antigen Recognition Interface
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2011-02-16
Authors: Yu, C.M., Peng, H.P., Chen, I.C., Lee, Y.C., Chen, J.B., Tsai, K.C., Chen, C.T., Chang, J.Y., Yang, E.W., Hsu, P.C., Jian, J.W., Hsu, H.J., Chang, H.J., Hsu, W.L., Huang, K.F., Ma, A.C., Yang, A.S.
PDB entry 3auw: Cytoplasmic domain of inward rectifier potassium channel Kir3.2 in complex with cadmium
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.56 Å
Deposited: 2011-02-17
Authors: Inanobe, A., Kurachi, Y.
PDB entry 3aux: Crystal structure of Rad50 bound to ADP
Classification: RECOMBINATION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2011-02-17
Authors: Lim, H.S., Cho, Y.
PDB entry 3auy: Crystal structure of Rad50 bound to ADP
Classification: RECOMBINATION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-02-18
Authors: Lim, H.S., Cho, Y.
PDB entry 3auz: Crystal structure of Mre11 with manganese
Classification: RECOMBINATION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.206 Å
Deposited: 2011-02-18
Authors: Park, Y.B., Cho, Y.
PDB entry 3av0: Crystal structure of Mre11-Rad50 bound to ATP S
Classification: RECOMBINATION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2011-02-18
Authors: Lim, H.S., Kim, J.S., Cho, Y.
PDB entry 3av1: The human nucleosome structure containing the histone variant H3.2
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2011-02-18
Authors: Tachiwana, H., Osakabe, A., Shiga, T., Miya, Y., Kimura, H., Kagawa, W., Kurumizaka, H.
PDB entry 3av2: The human nucleosome structure containing the histone variant H3.3
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2011-02-18
Authors: Tachiwana, H., Osakabe, A., Shiga, T., Miya, M., Kimura, H., Kagawa, W., Kurumizaka, H.
PDB entry 3av3: Crystal structure of glycinamide ribonucleotide transformylase 1 from Geobacillus kaustophilus
Classification: TRANSFERASE
Source organism: Geobacillus kaustophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-02-18
Authors: Kanagawa, M., Baba, S., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3av4: Crystal structure of mouse DNA methyltransferase 1
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2011-02-22
Authors: Takeshita, K., Suetake, I., Yamashita, E., Suga, M., Narita, H., Nakagawa, A., Tajima, S.
PDB entry 3av5: Crystal structure of mouse DNA methyltransferase 1 with AdoHcy
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2011-02-22
Authors: Takeshita, K., Suetake, I., Yamashita, E., Suga, M., Narita, H., Nakagawa, A., Tajima, S.
PDB entry 3av6: Crystal structure of mouse DNA methyltransferase 1 with AdoMet
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2011-02-22
Authors: Takeshita, K., Suetake, I., Yamashita, E., Suga, M., Narita, H., Nakagawa, A., Tajima, S.
PDB entry 3av7: Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with PMP, KYN as substrates and KYA as products
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2011-02-23
Authors: Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3av8: Refined Structure of Plant-type [2Fe-2S] Ferredoxin I from Aphanothece sacrum at 1.46 A Resolution
Classification: ELECTRON TRANSPORT
Source organism: Aphanothece sacrum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2011-02-28
Authors: Kameda, H., Hirabayashi, K., Wada, K., Fukuyama, K.
PDB entry 3av9: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-03-02
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3ava: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-03-02
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avb: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2011-03-02
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avc: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2011-03-02
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3ave: Crystal Structure of the Fucosylated Fc Fragment from Human Immunoglobulin G1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-03-04
Authors: Matsumiya, S., Yamaguchi, Y., Saito, J., Nagano, M., Sasakawa, H., Otaki, S., Satoh, M., Shitara, K., Kato, K.
PDB entry 3avf: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avg: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avh: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avi: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avj: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avk: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avl: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avm: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avn: Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site
Classification: RECOMBINATION/INHIBITOR
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-03-05
Authors: Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.
PDB entry 3avo: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with Pantothenate
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2011-03-06
Authors: Chetnani, B., Kumar, P., Abhinav, K.V., Chhibber, M., Surolia, A., Vijayan, M.
PDB entry 3avp: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with Pantothenol
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2011-03-06
Authors: Chetnani, B., Kumar, P., Abhinav, K.V., Chhibber, M., Surolia, A., Vijayan, M.
PDB entry 3avq: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with N9-Pan
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-03-06
Authors: Chetnani, B., Kumar, P., Abhinav, K.V., Chhibber, M., Surolia, A., Vijayan, M.
PDB entry 3avr: Catalytic fragment of UTX/KDM6A bound with histone H3K27me3 peptide, N-oxyalylglycine, and Ni(II)
Classification: OXIDOREDUCTASE/STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.803 Å
Deposited: 2011-03-07
Authors: Sengoku, T., Yokoyama, S.
PDB entry 3avs: Catalytic fragment of UTX/KDM6A bound with N-oxyalylglycine, and Ni(II)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2011-03-07
Authors: Sengoku, T., Yokoyama, S.
PDB entry 3avt: Structure of viral RNA polymerase complex 1
Classification: TRANSLATION, TRANSFERASE/RNA
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.607 Å
Deposited: 2011-03-08
Authors: Takeshita, D., Tomita, K.
PDB entry 3avu: Structure of viral RNA polymerase complex 2
Classification: TRANSLATION, TRANSFERASE/RNA
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.907 Å
Deposited: 2011-03-08
Authors: Takeshita, D., Tomita, K.
PDB entry 3avv: Structure of viral RNA polymerase complex 3
Classification: TRANSLATION, TRANSFERASE/RNA
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.119 Å
Deposited: 2011-03-08
Authors: Takeshita, D., Tomita, K.
PDB entry 3avw: Structure of viral RNA polymerase complex 4
Classification: TRANSLATION, TRANSFERASE/RNA
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.602 Å
Deposited: 2011-03-08
Authors: Takeshita, D., Tomita, K.
PDB entry 3avx: Structure of viral RNA polymerase complex 5
Classification: TRANSLATION, TRANSFERASE/RNA
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.406 Å
Deposited: 2011-03-08
Authors: Takeshita, D., Tomita, K.
PDB entry 3avy: Structure of viral RNA polymerase complex 6
Classification: TRANSLATION, TRANSFERASE/RNA
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.616 Å
Deposited: 2011-03-08
Authors: Takeshita, D., Tomita, K.
PDB entry 3avz: Structure of SARS 3CL protease with peptidic aldehyde inhibitor containing cyclohexyl side chain
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: SARS coronavirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2011-03-09
Authors: Akaji, K., Konno, H., Mitsui, H., Teruya, K., Hattori, Y., Ozaki, T., Kusunoki, M., Sanjho, A.
PDB entry 3aw0: Structure of SARS 3CL protease with peptidic aldehyde inhibitor
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: SARS coronavirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2011-03-09
Authors: Akaji, K., Konno, H., Mitsui, H., Teruya, K., Hattori, Y., Ozaki, T., Kusunoki, M., Sanjho, A.
PDB entry 3aw1: Structure of SARS 3CL protease auto-proteolysis resistant mutant in the absent of inhibitor
Classification: HYDROLASE
Source organism: SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-03-09
Authors: Akaji, K., Konno, H., Mitsui, H., Teruya, K., Hattori, Y., Ozaki, T., Kusunoki, M., Sanjho, A.
PDB entry 3aw5: Structure of a multicopper oxidase from the hyperthermophilic archaeon Pyrobaculum aerophilum
Classification: OXIDOREDUCTASE
Source organism: Pyrobaculum aerophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-03-10
Authors: Sakuraba, H., Ohshima, T., Yoneda, K.
PDB entry 3aw6: Crystal structure of tetragonal hen egg white lysozyme at 84.2% relative humidity
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-03-11
Authors: Takayama, Y., Nakasako, M.
PDB entry 3aw7: Crystal structure of tetragonal hen egg white lysozyme at 71.9% relative humidity
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-03-11
Authors: Takayama, Y., Nakasako, M.
PDB entry 3aw8: Crystal structure of N5-carboxyaminoimidazole ribonucleotide synthetase from Thermus thermophilus HB8
Classification: LIGASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2011-03-15
Authors: Okada, K., Tsunoda, S., Taka, H., Baba, S., Kanagawa, M., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3aw9: Structure of UDP-galactose 4-epimerase mutant
Classification: ISOMERASE
Source organism: Pyrobaculum calidifontis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2011-03-15
Authors: Sakuraba, H., Kawai, T., Yoneda, K., Ohshima, T.
PDB entry 3awd: Crystal structure of gox2181
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-03-18
Authors: Adam Yuan, Y., Yuan, Z.
PDB entry 3awe: Crystal structure of Pten-like domain of Ci-VSP (248-576)
Classification: HYDROLASE, MEMBRANE PROTEIN
Source organism: Ciona intestinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2011-03-19
Authors: Matsuda, M., Sakata, S., Takeshita, K., Suzuki, M., Yamashita, E., Okamura, Y., Nakagawa, A.
PDB entry 3awf: Crystal structure of Pten-like domain of Ci-VSP (236-576)
Classification: HYDROLASE, MEMBRANE PROTEIN
Source organism: Ciona intestinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2011-03-19
Authors: Matsuda, M., Sakata, S., Takeshita, K., Suzuki, M., Yamashita, E., Okamura, Y., Nakagawa, A.
PDB entry 3awg: Crystal structure of Pten-like domain of Ci-VSP G356A mutant (248-576)
Classification: HYDROLASE, MEMBRANE PROTEIN
Source organism: Ciona intestinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2011-03-19
Authors: Matsuda, M., Sakata, S., Takeshita, K., Suzuki, M., Yamashita, E., Okamura, Y., Nakagawa, A.
PDB entry 3awh: E13K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Classification: FLAVOPROTEIN
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2011-03-22
Authors: Sato, S., Nakanishi, T., Inoue, H., Kitamura, M.
PDB entry 3awi: Bifunctional tRNA modification enzyme MnmC from Escherichia coli
Classification: TRANSFERASE, OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-03-23
Authors: Kitamura, A., Sengoku, T., Nishimoto, M., Yokoyama, S., Bessho, Y.
PDB entry 3awj: Crystal structure of the Huperzia serrata polyketide synthase 1 complexed with CoA-SH
Classification: TRANSFERASE
Source organism: Huperzia serrata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-03-23
Authors: Morita, H., Kondo, S., Kato, R., Sugio, S., Kohno, T., Abe, I.