LiteFold/PDB huggingface dataset:
PDB entry 9cju: Structure of SARS-CoV-2 main protease in complex with Bofutrelvir in orthorhombic form
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-07-07
Authors: Esler, M.A., Shi, K., Harris, R.S., Aihara, H.
PDB entry 9cjv: X-ray crystal structure of SARS-CoV-2 main protease complex with Bofutrelvir
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-07-07
Authors: Esler, M.A., Shi, K., Aihara, H.
PDB entry 9cjw: The 24mer DNA Duplex 5'-GCTGGAAAGTTTAAACTTTCCAGC-3' Bound by the Diamidine DB2447 at Single G Sites
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-07-08
Authors: Terrell, J.R., Ogbonna, E.N., Paul, A., Wilson, W.D.
PDB entry 9cjx: Solution NMR structure of the RiPP proteusin DprE2 from Desulfotomaculum sp.
Classification: BIOSYNTHETIC PROTEIN
Source organism: Desulfotomaculum sp.
Experimental method: SOLUTION NMR
Deposited: 2024-07-08
Authors: McShan, A.C., Agarwal, V., Vidya, F.N.U.
PDB entry 9cjy: CryoEM structure of NC99 hemagglutinin trimer in complex with Fab BB798E 3-C07
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; Macaca fascicularis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-07-08
Authors: Li, N., Tsybovsky, Y., Sangesland, M., Kanekiyo, M.
PDB entry 9cjz: CryoEM structure of NC99 hemagglutinin trimer in complex with Fab T009 3-E04
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; Macaca fascicularis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-07-08
Authors: Li, N., Tsybovsky, Y., Sangesland, M., Kanekiyo, M.
PDB entry 9ck0: Cocrystal of PPARg LBD and NFKBIB / IKBB peptide with agonist GW1929
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-07-08
Authors: Nemetchek, M.D., McClelland, L.J., Hughes, T.S.
PDB entry 9ck2: Human PU.1 minimal ETS Domain (165-258) bound to d(AATAAGCGGAAGTGGG)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-07-08
Authors: Poon, G.M.K.
PDB entry 9ck3: Cryo-EM structure of in-vitro alpha-synuclein fibril
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2024-07-08
Authors: Sanchez, J.C., Borcik, C.G., Tonelli, M., Sibert, B., Rienstra, C.M., Wright, E.R.
PDB entry 9ck4: L9 epitope scaffold complexed with L9 Fabs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-07-08
Authors: Raghavan, S.S.R., Lee, W.H., Ward, A.B.
PDB entry 9ck5: Anthoceros agrestis Rubisco assembled with RbcX1, RbcX2, Raf1, Raf2 and BSD2
Classification: PHOTOSYNTHESIS
Source organism: Anthoceros agrestis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-07-08
Authors: Ang, W.S.L., Oh, Z.G., Li, F.W., Gunn, L.H.
PDB entry 9ck6: Cryo-EM structure of sarkosyl insoluble amyloid-beta 42 filaments extracted from human brain tissue
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-07-08
Authors: Butan, C., Strittmatter, S.
PDB entry 9ck7: Lineage IV Lassa virus glycoprotein (Josiah) in complex with polyclonal antibody (GPC-A epitope) from rabbit 187
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lassa virus Josiah; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-07-08
Authors: Brouwer, P.J.M., Perrett, H.R., Ward, A.B.
PDB entry 9ck8: Lineage IV Lassa virus glycoprotein (Josiah) in complex with polyclonal antibody (GPC-A epitope) from rabbit 189
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lassa virus Josiah; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-07-08
Authors: Brouwer, P.J.M., Perrett, H.R., Ward, A.B.
PDB entry 9ck9: [7F1F-AgR3-int] Tensegrity triangle with 2-thiothymidine modification in the junction region intercalating Ag+ between base pair stacks with R3 symmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.553 Å
Deposited: 2024-07-08
Authors: Vecchioni, S., Lu, B., Sha, R., Ohayon, Y.P.
PDB entry 9cka: [7F1F-AgP63-inter] Tensegrity triangle with 2-thiothymidine in the junction and Ag+ intercalating between base pair stacks with P63 symmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.63 Å
Deposited: 2024-07-08
Authors: Vecchioni, S., Lu, B., Sha, R., Ohayon, Y.P.
PDB entry 9ckc: Crystal structure of SMYD2 in complex with two PARP1 peptides
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-07-08
Authors: Zhang, Y., Alshammari, E., Spellmon, N., Brunzelle, J., Yang, Z.
PDB entry 9ckd: [FF-3Ag] Tensegrity triangle with a 2-thiothymidine:2-thiothymidine metal base pair with three Ag+ ions in R3 symmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.98 Å
Deposited: 2024-07-08
Authors: Vecchioni, S., Lu, B., Ohayon, Y.P., Sha, R.
PDB entry 9cke: [F2F-F3-3xAg] Tensegrity triangle with multiple 2-thiothymidine modifications and a 3xAg+ metal base pair with R3 symmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.79 Å
Deposited: 2024-07-08
Authors: Vecchioni, S., Lu, B., Sha, R., Ohayon, Y.P.
PDB entry 9ckf: Crystal structure of SMYD2 secondary binding site mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-07-08
Authors: Zhang, Y., Spellmon, N., Perry, E., Brunzelle, J., Yang, Z.
PDB entry 9ckg: Crystal structure of SMYD2 active site mutant
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-07-08
Authors: Sobota, J., Zhang, Y., Spellmon, N., Perry, E., Brunzelle, J., Yang, Z.
PDB entry 9ckh: [d2d3-2Ag] Tensegrity triangle with deazapurines on the helical and center strands with two deazaA:Ag+:T base pairs
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.92 Å
Deposited: 2024-07-08
Authors: Vecchioni, S., Jong, M.A., Woloszyn, K., Sha, R., Ohayon, Y.P., Gallindo, M.A., Lopez Chamorro, C.
PDB entry 9cki: Cryo-EM structure of the poly(4-styrenesulfonic acid-co-maleic acid) [PSCMA]-extractable amyloid-beta 42 oligomer from human brain tissue (Conformation 2)
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-07-09
Authors: Butan, C., Strittmatter, S.
PDB entry 9ckj: Co-crystal structure of 53BP1 tandem Tudor domains in complex with UNC9512
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-07-09
Authors: Zeng, H., Dong, A., Shell, D.J., Foley, C., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9ckk: Cryo-EM structure of acetylated alpha-synuclein A53T fibril - polymorph A
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Deposited: 2024-07-09
Authors: Ansari, S., Li, Y., Frederick, K.K.
PDB entry 9ckl: Cryo-EM structure of acetylated alpha-synuclein A53T fibril - polymorph B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-07-09
Authors: Ansari, S., Li, Y., Frederick, K.K.
PDB entry 9ckm: The 24mer DNA Duplex 5'-GCTGGAAAGTTTAAACTTTCCAGC-3' Bound by the Diamidine DB2457 at Single G Sites
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-07-09
Authors: Terrell, J.R., Ogbonna, E.N., Paul, A., Wilson, W.D.
PDB entry 9ckn: Histidine-covalent alpha-helical peptide (compound 6) targeting hMcl-1
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-07-09
Authors: Muzzarelli, K.M., Assar, Z., Alboreggia, G., Pellecchia, M.
PDB entry 9cko: Human G protein-coupled receptor kinase 5 wild-type in complex with sangivamycin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-07-09
Authors: Chen, Y., Tesmer, J.J.G.
PDB entry 9ckp: Human G protein-coupled receptor kinase 5-D311N in complex with sangivamycin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-07-09
Authors: Chen, Y., Tesmer, J.J.G.
PDB entry 9ckq: Human G protein-coupled receptor kinase 5-D311N ligand-free form
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-07-09
Authors: Chen, Y., Tesmer, J.J.G.
PDB entry 9ckr: Human G protein-coupled receptor kinase 5-D311N in complex with ATP and magnesium ion
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-07-09
Authors: Chen, Y., Tesmer, J.J.G.
PDB entry 9cks: Human G protein-coupled receptor kinase 5-D311N in complex with ATP and manganese ion
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2024-07-09
Authors: Chen, Y., Tesmer, J.J.G.
PDB entry 9ckt: X-ray diffraction structure of papain co-crystallized with E-64
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-07-09
Authors: Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9cku: Complex of M. smegmatis Dop with M. tuberculosis CoaX and Pup91
Classification: CYTOSOLIC PROTEIN
Source organism: Mycobacterium tuberculosis; Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2024-07-09
Authors: Chen, J., Yoo, J.H., Ekiert, D.C., Bhabha, G.
PDB entry 9ckv: Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-07-09
Authors: Werther, R., Nguyen, A., Estrada Alamo, K.A., Wang, X., Campbell, M.G.
PDB entry 9ckw: X-ray diffraction structure of papain co-crystallized with E-64D
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-07-10
Authors: Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9ckx: Crystal structure of Dsk2 Sti1 domain bound to a transmembrane domain
Classification: CHAPERONE
Source organism: Homo sapiens; Metschnikowia bicuspidata; Myxococcus xanthus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-07-10
Authors: Wohlever, M.L., Binsabaan, S., Sankaran, B.
PDB entry 9cky: X-ray diffraction structure of papain co-crystallized with novel biosynthetic inhibitor amine-65
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-07-10
Authors: Vlahakis, N.W., Liu, M., Tang, Y., Rodriguez, J.A.
PDB entry 9ckz: Cryo-EM structure of human XPR1 in apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-07-10
Authors: Wang, Z., Wu, H.
PDB entry 9cl0: Cryo-EM structure of human XPR1 in presence of inorganic phosphate and phytic acid
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-07-10
Authors: Wang, Z., Wu, H.
PDB entry 9cl1: Particulate methane monooxygenase in 0.02% DDM
Classification: OXIDOREDUCTASE
Source organism: Methylococcus capsulatus str. Bath
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-07-10
Authors: Tucci, F.J., Rosenzweig, A.C.
PDB entry 9cl2: Particulate methane monooxygenase in washed native membranes
Classification: OXIDOREDUCTASE
Source organism: Methylococcus capsulatus str. Bath
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2024-07-10
Authors: Tucci, F.J., Rosenzweig, A.C.
PDB entry 9cl3: Particulate methane monooxygenase in unwashed native membranes
Classification: OXIDOREDUCTASE
Source organism: Methylococcus capsulatus str. Bath
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-07-10
Authors: Tucci, F.J., Rosenzweig, A.C.
PDB entry 9cl4: Particulate methane monooxygenase in crosslinked, washed native membranes
Classification: OXIDOREDUCTASE
Source organism: Methylococcus capsulatus str. Bath
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-07-10
Authors: Tucci, F.J., Rosenzweig, A.C.
PDB entry 9cl5: particulate methane monooxygenase in native membranes
Classification: OXIDOREDUCTASE
Source organism: Methylocystis sp. ATCC 49242
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2024-07-10
Authors: Tucci, F.J., Rosenzweig, A.C.
PDB entry 9cl6: Ammonia monooxygenase in native membranes
Classification: OXIDOREDUCTASE
Source organism: Nitrosomonas europaea ATCC 19718; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-07-10
Authors: Tucci, F.J., Rosenzweig, A.C.
PDB entry 9cl7: Cryo-EM structure of FAN1-PCNA-DNA in final state
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2024-07-10
Authors: Li, F., Pluciennik, A.
PDB entry 9cl8: Importin alpha isoform 2 with synthetic zero net-charge nuclear localization signal
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-07-10
Authors: Zeytuni, N., Yang, Z., Odeh-Ahmed, A., Abdoli, A., Leyton, V.J., Bednova, O., Lavigne, P., Lemieux, B.
PDB entry 9cl9: WT 12C IM fraction, B-b3 with RluB bound
Classification: RIBOSOME
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.04 Å
Deposited: 2024-07-10
Authors: Lee, J., Sheng, K., Williamson, J.R.
PDB entry 9cla: Human Kv1.3 mutant-H451V
Classification: IMMUNE SYSTEM
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-07-10
Authors: Selvakumar, P., Swartz, K.J.
PDB entry 9clb: Crystal structure of Bak bound to the inhibitory aBAK
Classification: APOPTOSIS
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2024-07-10
Authors: Birkinshaw, R.W., Berger, S.A., Lee, E.F., Harris, T.J., Tran, S., Bera, A.K., Arguinchona, L., Kang, A., Sankaran, B., Kasapgil, S., Miller, M.S., Smyth, S., Uren, R., Kluck, R., Colman, P.M., Fairlie, W.D., Czabotar, P.E., Baker, D.
PDB entry 9clc: Crystal structure of maltose binding protein (Apo), mutant Trp10 to 4-Cyanotryptophan
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-07-10
Authors: Habel, E., Frkic, R.L., Jackson, C.J., Huber, T., Otting, G.
PDB entry 9cld: Crystal structure of maltose binding protein (Apo)
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2024-07-10
Authors: Habel, E., Frkic, R.L., Jackson, C.J., Huber, T., Otting, G.
PDB entry 9cle: Importin alpha isoform 2 with synthetic zero net-charge nuclear localization signal
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-07-11
Authors: Zeytuni, N., Yang, Z., Odeh-Ahmed, A., Abdoli, A., Leyton, V.J., Bednova, O., Lavigne, P., Lemieux, B.
PDB entry 9clf: Importin alpha isoform 2 with synthetic zero net-charge nuclear localization signal
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-07-11
Authors: Zeytuni, N., Yang, Z., Odeh-Ahmed, A., Abdoli, A., Leyton, V.J., Bednova, O., Lavigne, P., Lemieux, B.
PDB entry 9clg: Importin alpha isoform 2 with synthetic zero net-charge nuclear localization signal
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-07-11
Authors: Zeytuni, N., Yang, Z., Odeh-Ahmed, A., Abdoli, A., Leyton, V.J., Bednova, O., Lavigne, P., Lemieux, B.
PDB entry 9clh: X-ray diffraction structure of the apo form of papain
Classification: HYDROLASE
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-07-11
Authors: Vlahakis, N.W., Rodriguez, J.A.
PDB entry 9cli: Cryo-EM model derived from localized reconstruction of human adenovirus (Ad5)-hexon-FX complex at 3.6A resolution
Classification: VIRUS
Source organism: Homo sapiens; Human adenovirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2024-07-11
Authors: Reddy, V.S., Ma, O.X.
PDB entry 9clj: HIV-2 CA T=1 Icosahedron; assembled via lipid templating
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.98 Å
Deposited: 2024-07-11
Authors: Cook, M., Freniere, C., Xiong, Y.
PDB entry 9cll: Plasmodium falciparum tyrosyl-tRNA synthetase in complex with ML471-Tyr
Classification: LIGASE/INHIBITOR
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-07-11
Authors: Tai, C.W., Dogovski, C., Xie, S.C., Tilley, L., Griffin, M.D.W.
PDB entry 9clm: Transferrin Binding Protein A in complex with transferrin binding protein B and two molecules of transferrin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Neisseria meningitidis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-07-11
Authors: Dubey, S., Noinaj, N.
PDB entry 9cln: Cryo-EM model derived from localized reconstruction of human adenovirus 5 (Ad5)-hexon-FII complex at 3.9A resolution
Classification: VIRUS
Source organism: Homo sapiens; Human adenovirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2024-07-11
Authors: Reddy, V.S., Ma, O.X.
PDB entry 9clo: DosP R97A with c-di-GMP
Classification: OXYGEN BINDING
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-07-11
Authors: Kumar, P., Kober, D.L.
PDB entry 9clp: Structure of ecarin from the venom of Kenyan saw-scaled viper in complex with the Fab of neutralizing antibody H11
Classification: HYDROLASE
Source organism: Echis carinatus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2024-07-12
Authors: Mindrebo, J.T., Lander, G.C.
PDB entry 9clq: PANK3 complex structure with compound PZ-4352
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-07-12
Authors: Yun, M., Lee, R.E.
PDB entry 9clr: Hydroxynitrile Lyase from Hevea brasiliensis with Seventy-one Mutations
Classification: HYDROLASE
Source organism: Hevea brasiliensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-07-12
Authors: Tan, P., Meixner, E.L., Nguyen, A., Kazlaukas, R.J., Pierce, C.T., Evans, R.L., Shi, K., Aihara, H.
PDB entry 9cls: Cryo-EM model derived from localized reconstruction of human adenovirus 6 (Ad6)-hexon-FII complex
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human adenovirus 6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-07-12
Authors: Reddy, V.S., Ma, O.X.
PDB entry 9clt: Transferrin Binding Protein A in complex with transferrin binding protein B and transferrin (iron bound to N lobe only)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Neisseria meningitidis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-07-12
Authors: Dubey, S., Noinaj, N.
PDB entry 9clu: [Q:(Au+)3:F_pH11] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.75 Å
Deposited: 2024-07-12
Authors: Imstepf, L., Vecchioni, S., Sha, R., Ohayon, Y.P., Woloszyn, K.
PDB entry 9clv: Human Kv1.3 mutant-P424G
Classification: IMMUNE SYSTEM
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-07-12
Authors: Selvakumar, P., Swartz, K.J.
PDB entry 9clw: Cryo-EM structure of Gq-coupled FFA2 in complex with TUG-1375 and 4-CMTB
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-07-12
Authors: Zhang, X., Tikhonova, I., Milligan, G., Zhang, C.
PDB entry 9clx: Angiotensin I converting enzyme full-length dimer
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-07-12
Authors: Mancl, J.M., Tang, W.J.
PDB entry 9cly: Crystal structure of the 3-ketoacyl-(acyl-carrier-protein) reductase, CylG, from Streptococcus agalactiae 2603V/R
Classification: OXIDOREDUCTASE
Source organism: Streptococcus agalactiae 2603V/R
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2024-07-12
Authors: Maltseva, N., Kim, Y., Endres, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9clz: Novel designed icosahedral nanoparticle I3-A6
Classification: VIRUS LIKE PARTICLE
Source organism: Escherichia coli BL21
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-07-12
Authors: Haas, C.M., Jasti, N., Dosey, A.M., Gillespie, R., Allen, J.D., Leaf, E.M., Crispin, M., DeForest, C., Kanekiyo, M., King, N.P.
PDB entry 9cm0: Novel designed icosahedral nanoparticle I3-A7
Classification: VIRUS LIKE PARTICLE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-07-12
Authors: Haas, C.M., Jasti, N., Dosey, A.M., Gillespie, R., McGowan, J., Allen, J.D., Leaf, E.M., Crispin, M., DeForest, C., Kanekiyo, M., King, N.P.
PDB entry 9cm1: Novel designed icosahedral nanoparticle I3-D12
Classification: VIRUS LIKE PARTICLE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-07-12
Authors: Haas, C.M., Jasti, N., Dosey, A.M., Gillespie, R., McGowan, J., Allen, J.D., Leaf, E.M., Crispin, M., DeForest, C., Kanekiyo, M., King, N.P.
PDB entry 9cm2: Cryo-EM model derived from localized reconstruction of human adenovirus 6-hexon-FX complex at 4.3A resolution
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human adenovirus 6
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.01 Å
Deposited: 2024-07-12
Authors: Reddy, V.S., Ma, O.X.
PDB entry 9cm3: Cryo-EM structure of Gq-coupled FFA2 in complex with TUG-1375 and compound 187
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-07-12
Authors: Zhang, X., Tikhonova, I., Milligan, G., Zhang, C.
PDB entry 9cm4: HCV2 Fab bound to selected RNA loop
Classification: RNA binding protein/RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-07-12
Authors: Disare, M.T., Lewicka, A., Piccirilli, J.A.
PDB entry 9cm5: CryoEM Strucuture of TcdB in complex with De Novo Minibinder fzd48
Classification: TOXIN
Source organism: Clostridioides difficile; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.61 Å
Deposited: 2024-07-12
Authors: Weidle, C., Carr, K.D., Borst, A.J.
PDB entry 9cm6: Horse liver alcohol dehydrogenase V203L in complex with NADH and N-cylcohexyl formamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-07-12
Authors: Mukherjee, S., Boxer, S.G.
PDB entry 9cm7: Cryo-EM structure of Gi-coupled FFA2 in complex with TUG-1375 and AZ-1729
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-07-12
Authors: Zhang, X., Tikhonova, I., Milligan, G., Zhang, C.
PDB entry 9cm8: UDP-GlcNAc 2-epimerase MnaA of Paenibacillus alvei
Classification: ISOMERASE
Source organism: Paenibacillus alvei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-07-13
Authors: Legg, M.S.G., Mateyko, N., Evans, S.V.
PDB entry 9cm9: Cryo-EM model derived from localized reconstruction of Ad657-hexon-FX complex at 3.86A resolution
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human adenovirus 6
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-07-13
Authors: Reddy, V.S., Ma, O.X.
PDB entry 9cma: Cryo-EM structure of FAN1 R507H-PCNA-DNA in final state
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-07-13
Authors: LI, F., Pluciennik, A.
PDB entry 9cmb: Human PU.1 ETS Domain (165-270) bound to d(AATAAAAGGAAGTGGG)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-07-13
Authors: Poon, G.M.K.
PDB entry 9cmc: Crystal structure of the peanut allergen Ara h 2 with two human derived Fab antibodies 22S1 and 23P34
Classification: ALLERGEN
Source organism: Arachis hypogaea; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2024-07-14
Authors: Pedersen, L.C., Mueller, G.A., Min, J.
PDB entry 9cme: Room Temperature Crystal Structure of Collagenase ColH from Hathewaya histolytica at 2.7 Angstrom resolution
Classification: HYDROLASE
Source organism: Hathewaya histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-07-15
Authors: Sakon, J., Bonsu, A., Oki, H., Kawahara, K., Matsushita, O., Mima, T., Takebe, K.
PDB entry 9cmf: Substrate bound DosP
Classification: OXYGEN BINDING
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2024-07-15
Authors: Kumar, P., Kober, D.L.
PDB entry 9cmg: Transferrin Binding Protein A in complex with transferrin binding protein B and transferrin (iron bound in both lobes of Tf)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Neisseria meningitidis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2024-07-15
Authors: Dubey, S., Noinaj, N.
PDB entry 9cmh: Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin
Classification: MEMBRANE PROTEIN
Source organism: Clostridium perfringens; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-07-15
Authors: Vecchio, A.J.
PDB entry 9cmi: Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin, sFab COP-1, and Nanobody
Classification: MEMBRANE PROTEIN
Source organism: Clostridium perfringens; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-07-15
Authors: Vecchio, A.J.
PDB entry 9cmj: Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (L50F, E166V)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-07-15
Authors: Kovalevsky, A., Coates, L., Gerlits, O.
PDB entry 9cmk: Crystal structure of p110alpha-RAS binding domain (RBD) in complex with molecular glue D927
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-07-15
Authors: Czyzyk, D.J., Simanshu, D.K.
PDB entry 9cml: Crystal structure of p110alpha-RAS binding domain (RBD) in complex with molecular glue D223
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-07-15
Authors: Czyzyk, D.J., Simanshu, D.K.
PDB entry 9cmm: Two protofilament structure of alpha1B and betaI/IVb microtubule bound to GMPCPP
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-07-15
Authors: Zehr, E.A., Roll-Mecak, A.
PDB entry 9cmn: Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (E166A, L167F)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-07-15
Authors: Kovalevsky, A., Coates, L., Gerlits, O.
PDB entry 9cmo: Cryo-EM model derived from localized reconstruction of Ad657-hexon-FII complex at 4.14A resolution
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human adenovirus 6
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.17 Å
Deposited: 2024-07-15
Authors: Reddy, V.S., Ma, O.X.
PDB entry 9cmp: Structure of human Argonaute2-guide-target complex in a fully paired, slicing-competent conformation
Classification: HYDROLASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-07-15
Authors: Mohamed, A.A., Wang, P.Y., Bartel, D.P., Vos, S.M.
PDB entry 9cmq: Horse liver alcohol dehydrogenase V203A in complex with NADH and N-cylcohexyl formamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-07-15
Authors: Mukherjee, S., Boxer, S.G.
PDB entry 9cmr: Saccharomyces cerevisiae Tom1 HECT domain
Classification: LIGASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-07-15
Authors: Schubert, H.L., Hill, C.P.
PDB entry 9cms: Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (E166V) in complex with ensitrelvir (ESV)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-07-15
Authors: Kovalevsky, A., Coates, L., Gerlits, O.
PDB entry 9cmt: The crystal structure of HP1alpha CSD-Agno complex
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2024-07-15
Authors: Goldgur, Y., Xie, W., Schaefer, U., Tarakhovsky, A., Patel, D., Chen, S.
PDB entry 9cmu: Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (L50F, E166V) in complex with ensitrelvir (ESV)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-07-15
Authors: Kovalevsky, A., Coates, L., Gerlits, O.
PDB entry 9cmv: Crystal structure of the KRAS-p110alpha complex in the presence of molecular glue D223
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2024-07-15
Authors: Czyzyk, D.J., Yan, W., Simanshu, D.K.
PDB entry 9cmw: The cryo-EM structure of BamACDE complex from Neisseria gonorrhoeae
Classification: MEMBRANE PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-07-15
Authors: Billings, E.M., Noinaj, N.
PDB entry 9cmx: Human DJ-1, fixed target serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2024-07-15
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cmy: Human DJ-1, 6.5-18.5 min mixing with methylglyoxal, fixed target serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-07-15
Authors: Zielinski, K., Dolamore, C., Dalton, K., Meisburger, S., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cmz: Crystal Structure of Cdk-related protein kinase 6 (PK6) from Plasmodium falciparum in complex with inhibitor KG2-051
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-07-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9cn0: The cryo-EM structure of BamADE subcomplex from Neisseria gonorrhoeae
Classification: MEMBRANE PROTEIN
Source organism: Neisseria gonorrhoeae
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2024-07-15
Authors: Billings, E.M., Noinaj, N.
PDB entry 9cn1: The cryo-EM structure of BamAD subcomplex from Neisseria gonorrhoeae
Classification: MEMBRANE PROTEIN
Source organism: Neisseria gonorrhoeae
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2024-07-15
Authors: Billings, E.M., Noinaj, N.
PDB entry 9cn2: Human astrovirus 2 spike bound to neutralizing scFv 4B6
Classification: VIRAL PROTEIN
Source organism: Human astrovirus 2; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2024-07-15
Authors: Lanning, S., DuBois, R.M.
PDB entry 9cn3: Human 39S mitoribosome in complex with antibiotic Linezolid
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-07-15
Authors: Raskar, T., Bibel, B., Galonic Fujimori, D., Fraser, J.
PDB entry 9cns: HIV-2 CA hexamer; assembled via liposome templating
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-07-15
Authors: Cook, M., Freniere, C., Xiong, Y.
PDB entry 9cnt: HIV-2 CA pentamer; assembled via liposome templating
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-07-15
Authors: Cook, M., Freniere, C., Xiong, Y.
PDB entry 9cnu: HIV-2 CA hexamer bound with Nup153 peptide; assembled with liposome templating
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-07-15
Authors: Cook, M., Freniere, C., Xiong, Y.
PDB entry 9cnv: HIV-2 CA hexamer bound with CPSF6 peptide; assembled via liposome templating
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-07-15
Authors: Cook, M., Freniere, C., Xiong, Y.
PDB entry 9cnw: CryoEM structure of the APO-BAM complex in DDM detergent
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-07-15
Authors: Sun, D., Tegunov, D., Payandeh, J.
PDB entry 9cnx: CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-07-15
Authors: Sun, D., Tegunov, D., Payandeh, J.
PDB entry 9cny: CryoEM structure of the APO-BAM complex in SMA nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-07-15
Authors: Sun, D., Tegunov, D., Payandeh, J.
PDB entry 9cnz: Structure of BAM complexed with PTB2 ligand in detergent
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-07-15
Authors: Sun, D., Tegunov, D., Payandeh, J.
PDB entry 9co0: CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-07-15
Authors: Sun, D., Tegunov, D., Payandeh, J.
PDB entry 9co2: Crystal structure of BamA in complex with the PTB2 open-state inhibitor (anisotropic data set)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-07-16
Authors: Sun, D., Payandeh, J.
PDB entry 9co4: Cryo-EM structure of the receptor-bound amyloid-beta 42 oligomer from human brain tissue (Conformation 1)
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-07-16
Authors: Butan, C., Strittmatter, S.
PDB entry 9co5: Crystal Structure of Macrocycle mediated complex of FKBP12 and MAPRE1
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2024-07-16
Authors: King, D.A.
PDB entry 9co6: BA.5 spike/Nanosota-9 complex
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-07-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 9co7: Local refinement of BA.5 spike/Nanosota-9 complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-07-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 9co8: JN.1 spike/Nanosota-9 complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-07-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 9co9: Local refinement of JN.1 spike/Nanosota-9 complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2024-07-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 9coc: Two protofilament structure of alpha1B and betaI/IVb microtubule bound to GDP
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-07-16
Authors: Zehr, E.A., Roll-Mecak, A.
PDB entry 9cod: C15 symmetrized DEV collar
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2024-07-16
Authors: Iglesias, S.M., Hou, C.F.D., Li, F., Cingolani, G.
PDB entry 9coe: Structure of the full-length Measles virus Fusion protein E170G E455G in the pre-fusion conformation in nanodisc
Classification: VIRAL PROTEIN
Source organism: Measles virus strain Ichinose-B95a
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-07-16
Authors: Zyla, D., Saphire, E.O.
PDB entry 9cof: Structure of the full-length Measles virus Fusion protein E170G E455G in the pre-fusion conformation bound by [FIP-HRC]2-PEG11 in nanodisc
Classification: VIRAL PROTEIN
Source organism: Measles virus strain Ichinose-B95a; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2024-07-16
Authors: Zyla, D., Saphire, E.O.
PDB entry 9cog: Structure of the full-length Measles virus Fusion protein E170G E455G in the pre-fusion conformation bound by [FIP-HRC]2-PEG11 in amphipol
Classification: VIRAL PROTEIN
Source organism: Measles virus strain Ichinose-B95a; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-07-16
Authors: Zyla, D., Saphire, E.O.
PDB entry 9coh: Structure of the full-length Measles virus Fusion protein E170G E455G with mutated furin cleavage site in the pre-fusion conformation in amphipol
Classification: VIRAL PROTEIN
Source organism: Measles virus strain Ichinose-B95a
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-07-16
Authors: Zyla, D., Saphire, E.O.
PDB entry 9coj: SH3-like tandem domain of human KIN protein
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-07-16
Authors: de Lourenco, I.O., Fossey, M.A., Souza, F.P., Seixas, F.A.V., Fernandez, M.A., Almeida, F.C.L., Caruso, I.P.
PDB entry 9cok: Cryo-EM structure of the Nipah virus (Malaysia Strain) L:P complex
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Henipavirus nipahense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-07-16
Authors: Chen, Z.H., Liang, B.
PDB entry 9col: [D:Au3+:F] Tensegrity triangle with a 2,6-diaminopurine:2-thiothymidine base pair mediated by Au3+.
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.23 Å
Deposited: 2024-07-16
Authors: Vecchioni, S., Woloszyn, K., Sha, R., Ohayon, Y.P.
PDB entry 9com: FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, unbound dimer crystal form 5
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-07-17
Authors: Fellner, M.
PDB entry 9con: Human Kv1.3-H451V with A0194009G09 nanobodies conformation 1
Classification: IMMUNE SYSTEM
Source organism: Aequorea victoria; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-07-17
Authors: Selvakumar, P., Swartz, K.J.
PDB entry 9coo: Nanobody 4 bound to Apolipoprotein B 100
Classification: LIPID TRANSPORT
Source organism: Camelus bactrianus; Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2024-07-17
Authors: Dearborn, A.D., Kumar, A., Reimund, M., Graziano, G., Lei, H., Neufeld, E.B., Remaley, A.T., Marcotrigiano, J.
PDB entry 9cop: Yeast RAVE bound to V-ATPase V1 complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-07-17
Authors: Wang, H., Rubinstein, J.L.
PDB entry 9cor: Crystal structure of CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2024-07-17
Authors: Sevrioukova, I.F.
PDB entry 9cos: Crystal structure of CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-07-17
Authors: Sevrioukova, I.F.
PDB entry 9cot: Crystal structure of CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2024-07-17
Authors: Sevrioukova, I.F.
PDB entry 9cou: Crystal structure of CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2024-07-17
Authors: Sevrioiukova, I.F.
PDB entry 9cov: Crystal structure of CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-07-17
Authors: Sevrioukova, I.F.
PDB entry 9cow: Crystal structure of CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-07-17
Authors: Sevrioukova, I.F.
PDB entry 9cox: Crystal structure of CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2024-07-17
Authors: Sevrioukova, I.F.
PDB entry 9coy: Crystal structure of CYP3A4 bound to an inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-07-17
Authors: Sevrioukova, I.F.
PDB entry 9coz: Crystal structure of outer membrane lipoprotein carrier protein (LolA) from Francisella philomiragia (Orthorhombic P Form)
Classification: LIPID TRANSPORT
Source organism: Francisella philomiragia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-07-17
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9cp0: Crystal structure of the porcine astrovirus 4 capsid spike domain
Classification: VIRAL PROTEIN
Source organism: Porcine astrovirus 4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-07-17
Authors: Haley, D.J., DuBois, R.M.
PDB entry 9cp1: Post-targeting aCascade Type I-A CRISPR-Cas Surveillance Complexes
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Saccharolobus solfataricus; Saccharolobus solfataricus P2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-07-17
Authors: Gentry, J.K., Findlay, J.L., Lawrence, C.M.
PDB entry 9cp2: Post-targeting aCASCADE Type IA CRISPR_Cas Surveillance Complexes
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Saccharolobus solfataricus; Saccharolobus solfataricus P2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-07-17
Authors: Gentry, J.K., Findlay, J.L., Lawrence, C.M.
PDB entry 9cp3: Post-targeting aCascade Type IA CRISPR-Cas Surveillance Complexes
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Saccharolobus solfataricus; Saccharolobus solfataricus P2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-07-17
Authors: Findlay, J.L., Gentry, J.K., Lawrence, C.M.
PDB entry 9cp4: Cryo-EM structure of human GAT3 in complex with SNAP-5114, inward-open conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-07-17
Authors: Yadav, R., Han, G.W., Gati, C.
PDB entry 9cp5: Cryo-EM structure of human GAT3, apo state, inward-open conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-07-17
Authors: Yadav, R., Han, G.W., Gati, C.
PDB entry 9cp6: Crystal structure of the DNA binding domain of FLI1 (residues 259-371)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-07-17
Authors: Hou, C., Tsodikov, O.V.
PDB entry 9cp7: Crystal structure of DHPS-3-dehydrogenase, HpsN from Cupriavidus pinatubonensis in complex with product analogue (L-cysteate) and NADH
Classification: OXIDOREDUCTASE
Source organism: Cupriavidus pinatubonensis JMP134
Experimental method: X-RAY DIFFRACTION
Resolution: 1.751 Å
Deposited: 2024-07-18
Authors: Lee, M.
PDB entry 9cp8: Crystal structure of DHPS-3-dehydrogenase, HpsN from Cupriavidus pinatubonensis in complex with product (R-sulfolactate) and NADH
Classification: OXIDOREDUCTASE
Source organism: Cupriavidus pinatubonensis JMP134
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-07-18
Authors: Lee, M.
PDB entry 9cp9: Crystal structure of DHPS-3-dehydrogenase, HpsN H319A variant from Cupriavidus pinatubonensis in complex with substrate (R-DHPS) and NADH
Classification: OXIDOREDUCTASE
Source organism: Cupriavidus pinatubonensis JMP134
Experimental method: X-RAY DIFFRACTION
Resolution: 2.013 Å
Deposited: 2024-07-18
Authors: Lee, M.