LiteFold/PDB huggingface dataset:
PDB entry 7vf2: Human m6A-METTL associated complex (WTAP, VIRMA, ZC3H13, and HAKAI)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-09-10
Authors: Su, S., Li, S., Deng, T., Gao, M., Yin, Y., Wu, B., Peng, C., Liu, J., Ma, J., Zhang, K.
PDB entry 7vf3: Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2021-09-10
Authors: Sugano, N.N., Hirata, K., Yamashita, K., Yamamoto, M., Arimori, T., Takagi, J.
PDB entry 7vf4: Crystal structure of Vps75 from Candida albicans
Classification: CHAPERONE
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-09-10
Authors: Wang, W., Chen, X., Yang, Z., Chen, X., Li, C., Wang, M.
PDB entry 7vf5: Human m6A-METTL associated complex (WTAP, VIRMA, and HAKAI)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-09-10
Authors: Su, S., Li, S., Deng, T., Gao, M., Yin, Y., Wu, B., Peng, C., Liu, J., Ma, J., Zhang, K.
PDB entry 7vf6: The crystal structure of PurZ0
Classification: LIGASE
Source organism: Gordonia phage Archimedes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.703 Å
Deposited: 2021-09-10
Authors: Tong, Y., Zhang, Y.
PDB entry 7vf7: Crystal Structure of HasAp with Co-octaethylporphyrin
Classification: METAL TRANSPORT
Source organism: Pseudomonas aeruginosa str. PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2021-09-10
Authors: Takiguchi, A., Sakakibara, E., Sugimoto, H., Shoji, O., Shinokubo, H.
PDB entry 7vf8: Crystal Structure of HasAp with Co-5-octaethyloxaporphyrinium cation
Classification: METAL TRANSPORT
Source organism: Pseudomonas aeruginosa str. PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2021-09-10
Authors: Takiguchi, A., Sakakibara, E., Sugimoto, H., Shoji, O., Shinokubo, H.
PDB entry 7vf9: Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2021-09-10
Authors: He, D.W., You, L.L., Zhang, Y.
PDB entry 7vfa: the complex of SARS-CoV2 3CL and NB1A2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Camelus bactrianus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-09-11
Authors: Sun, Z.C., Wang, L., Geng, Y.
PDB entry 7vfb: the complex of SARS-CoV2 3cl and NB2B4
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Camelus bactrianus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-09-11
Authors: Geng, Y., Sun, Z.C., Wang, L.
PDB entry 7vfc: Crystal structure of cPMO2
Classification: OXIDOREDUCTASE
Source organism: compost metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2021-09-12
Authors: Liu, D.
PDB entry 7vfd: Cryo-EM structure of Vaccinia virus scaffolding protein D13
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2021-09-13
Authors: Wolf, M., Hyun, J., Matsunami, H., Kim, T.G.
PDB entry 7vfe: Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal polyhistidine tag
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2021-09-13
Authors: Wolf, M., Hyun, J., Matsunami, H., Kim, T.G.
PDB entry 7vff: Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal 17 residue truncation
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-09-13
Authors: Wolf, M., Hyun, J., Matsunami, H., Kim, T.G.
PDB entry 7vfg: Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2021-09-13
Authors: Wolf, M., Hyun, J., Matsunami, H., Kim, T.G.
PDB entry 7vfh: Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-09-13
Authors: Wolf, M., Hyun, J., Matsunami, H., Kim, T.G.
PDB entry 7vfi: Cryo-EM structure of the mouse TAPL (9mer-peptide bound)
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2021-09-13
Authors: Park, J.G., Kim, S., Jang, E., Choi, S.H., Han, H., Kim, J.W., Ju, S., Min, D.S., Jin, M.S.
PDB entry 7vfj: Cytochrome c-type biogenesis protein CcmABCD
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2021-09-13
Authors: Zhu, J.P., Zhang, K., Li, J., Zheng, W., Gu, M.
PDB entry 7vfk: Crystal structure of SdgB (ligand-free form)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2021-09-13
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7vfl: Crystal structure of SdgB (UDP, NAG, and O-glycosylated SD peptide-binding form)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain USA300); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2021-09-13
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7vfm: Crystal structure of SdgB (UDP and SD peptide-binding form)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus USA300; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2021-09-13
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7vfn: Crystal structure of SdgB (SD peptide-binding form)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus USA300; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-13
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7vfo: Crystal structure of SdgB (Phosphate-binding form)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-09-13
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7vfp: Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with heme and single ATP
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.03 Å
Deposited: 2021-09-13
Authors: Li, J., Zheng, W., Gu, M., Zhang, K., Zhu, J.P.
PDB entry 7vfq: Wild type GltA from Bifidobacterium infantis JCM 1222 complexed with lacto-N-tetraose
Classification: TRANSLOCASE
Source organism: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-09-13
Authors: Sato, M., Sakanaka, M., Katayama, T., Fushinobu, S.
PDB entry 7vfr: GltA N83K mutant from Bifidobacterium infantis JCM 1222 complexed with lacto-N-tetraose
Classification: TRANSLOCASE
Source organism: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2021-09-13
Authors: Sato, M., Sakanaka, M., Katayama, T., Fushinobu, S.
PDB entry 7vfs: Human N-type voltage gated calcium channel CaV2.2-alpha2/delta1-beta1 complex, apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-09-13
Authors: Dong, Y., Gao, Y., Wang, Y., Zhao, Y.
PDB entry 7vft: Crystal structure of rGGGC(CAG)5GUCC oligo
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-09-13
Authors: An, Y., Chan, H.Y.E., Ngo, J.C.K.
PDB entry 7vfu: Human N-type voltage gated calcium channel CaV2.2-alpha2/delta1-beta1 complex, bound to ziconotide
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-09-13
Authors: Dong, Y., Gao, Y., Wang, Y., Zhao, Y.
PDB entry 7vfv: Human N-type voltage gated calcium channel CaV2.2-alpha2/delta1-beta1 complex, bound to PD173212
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-09-13
Authors: Dong, Y., Gao, Y., Wang, Y., Zhao, Y.
PDB entry 7vfw: Human N-type voltage gated calcium channel CaV2.2-alpha2/delta1-beta1 complex, bound to CaV2.2-blocker1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-09-13
Authors: Dong, Y., Gao, Y., Wang, Y., Zhao, Y.
PDB entry 7vfx: The structure of Formyl Peptide Receptor 1 in complex with Gi and peptide agonist fMIFL
Classification: SIGNALING PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-09-14
Authors: Wang, X.K., Chen, G., Liao, Q.W., Du, Y., Hu, H.L., Ye, D.Q.
PDB entry 7vg2: Cryo-EM structure of Arabidopsis DCL3 in complex with a 40-bp RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-09-14
Authors: Wang, Q., Du, J.
PDB entry 7vg3: Cryo-EM structure of Arabidopsis DCL3 in complex with a 30-bp RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2021-09-14
Authors: Wang, Q., Du, J.
PDB entry 7vg4: 10,5-methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1 strain
Classification: HYDROLASE
Source organism: Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2021-09-14
Authors: Kim, S., Lee, S., Kim, I.-K., Seo, H., Kim, K.-J.
PDB entry 7vg5: 10,5-methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1 with tetrahydrofolate
Classification: HYDROLASE
Source organism: Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-09-14
Authors: Kim, S., Lee, S., Kim, I.-K., Seo, H., Kim, K.-J.
PDB entry 7vg7: Plexin B1 extracellular fragment in complex with lasso-grafted PB1m6A9 peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-09-14
Authors: Sugano, N.N., Hirata, K., Yamashita, K., Yamamoto, M., Arimori, T., Takagi, J.
PDB entry 7vg8: TYLCV Rep-DNA
Classification: VIRAL PROTEIN
Source organism: Tomato yellow leaf curl virus; Tomato yellow leaf curl virus-IL [MX: SLP:11]
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2021-09-14
Authors: Zhang, S.Y., Wang, C.N.
PDB entry 7vg9: Crystal structure of phosphotransbutyrylase from Clostridium acetobutylicum
Classification: TRANSFERASE
Source organism: Clostridium acetobutylicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2021-09-15
Authors: Kim, S., Kim, K.-J.
PDB entry 7vga: Cryo-EM structure of alphavirus, Getah virus
Classification: VIRUS
Source organism: Getah virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2021-09-15
Authors: Wang, M., Sun, Z.Z., Wang, J.F.
PDB entry 7vgb: Crystal structure of apo prolyl oligopeptidase from Microbulbifer arenaceous
Classification: HYDROLASE
Source organism: Microbulbifer arenaceous
Experimental method: X-RAY DIFFRACTION
Resolution: 2.227 Å
Deposited: 2021-09-15
Authors: Huang, P., Jiang, Z.Q.
PDB entry 7vgc: Crystal structure of prolyl oligopeptidase from Microbulbifer arenaceous complex with a transition state analog inhibitor ZPR
Classification: HYDROLASE
Source organism: Microbulbifer arenaceous
Experimental method: X-RAY DIFFRACTION
Resolution: 2.722 Å
Deposited: 2021-09-15
Authors: Huang, P., Yang, S.Q., Jiang, Z.Q.
PDB entry 7vge: Structure of the PDZ deleted variant of HtrA2 protease (S306A)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2021-09-15
Authors: Parui, A.L., Mishra, V., Bhaumik, P., Bose, K.
PDB entry 7vgf: cryo-EM structure of AMP-PNP bound human ABCB7
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-09-16
Authors: Yan, Q., Yang, X., Shen, Y.
PDB entry 7vgg: Cryo-EM structure of Ultraviolet-B activated UVR8 in complex with COP1
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-09-16
Authors: Wang, Y.D., Wang, L.X., Guan, Z.Y., Yin, P.
PDB entry 7vgh: Cryo-EM structure of the human P4-type flippase ATP8B1-CDC50B in the auto-inhibited E2P state
Classification: LIPID TRANSPORT/TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2021-09-16
Authors: Chen, M.T., Chen, Y.
PDB entry 7vgi: Cryo-EM structure of the human P4-type flippase ATP8B1-CDC50A in the auto-inhibited E2P state
Classification: LIPID TRANSPORT/TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2021-09-16
Authors: Chen, M.T., Chen, Y.
PDB entry 7vgj: Cryo-EM structure of the human P4-type flippase ATP8B1-CDC50A in the auto-inhibited E2Pi-PS state
Classification: TRANSLOCASE/LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2021-09-16
Authors: Chen, M.T., Chen, Y., Chen, Z.P., Zhou, C.Z., Hou, W.T., Chen, Y.
PDB entry 7vgk: Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI
Classification: ISOMERASE
Source organism: Lactobacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-09-16
Authors: Iwase, H., Oiki, S., Mikami, B., Takase, R., Hashimoto, W.
PDB entry 7vgl: Crystal structure of CmnC
Classification: OXIDOREDUCTASE
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2021-09-17
Authors: Hsiao, Y.H., Huang, S.J., Lin, E.C., Lee, Y.C., Zheng, Y.Z., Chang, C.Y.
PDB entry 7vgm: Crystal structure of Phenylalanine hydroxylase from Bacillus cereus ATCC 14579
Classification: METAL BINDING PROTEIN
Source organism: Bacillus cereus ATCC 14579
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2021-09-17
Authors: Park, J., Kim, K.-J.
PDB entry 7vgn: Crystal structure of CmnC
Classification: OXIDOREDUCTASE
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-09-17
Authors: Huang, S.J., Hsiao, Y.H., Lin, E.C., Lee, Y.C., Zheng, Y.Z., Chang, C.Y.
PDB entry 7vgo: Hen egg lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2021-09-17
Authors: Oda, M., Ikura, T., Ito, N.
PDB entry 7vgp: Hen egg lysozyme refolded after denaturation at acidic pH
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2021-09-17
Authors: Oda, M., Ikura, T., Ito, N.
PDB entry 7vgq: Cryo-EM structure of Machupo virus polymerase L in complex with matrix protein Z
Classification: VIRAL PROTEIN
Source organism: Escherichia coli (strain K12); Machupo virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-09-18
Authors: Zhang, X., Ma, J., Zhang, S.
PDB entry 7vgr: SARS-CoV-2 M protein dimer (long form) in complex with YN7756_1 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-09-18
Authors: Zhang, Z., Ohto, U., Shimizu, T.
PDB entry 7vgs: SARS-CoV-2 M protein dimer (short form) in complex with YN7717_9 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-09-18
Authors: Zhang, Z., Ohto, U., Shimizu, T.
PDB entry 7vgt: Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3: resting state structure with bromide ion
Classification: MEMBRANE PROTEIN
Source organism: Nonlabens marinus S1-08
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-18
Authors: Hosaka, T., Nango, E., Nakane, T., Luo, F., Kimura-Someya, T., Shirouzu, M.
PDB entry 7vgu: Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3 : structure obtained 1 msec after photoexcitation with bromide ion
Classification: MEMBRANE PROTEIN
Source organism: Nonlabens marinus S1-08
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-18
Authors: Hosaka, T., Nango, E., Nakane, T., Luo, F., Kimura-Someya, T., Shirouzu, M.
PDB entry 7vgv: Anion free form of light-driven chloride ion-pumping rhodopsin, NM-R3, structure determined by serial femtosecond crystallography at SACLA
Classification: MEMBRANE PROTEIN
Source organism: Nonlabens marinus S1-08
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-09-18
Authors: Hosaka, T., Nango, E., Nakane, T., Luo, F., Kimura-Someya, T., Shirouzu, M.
PDB entry 7vgw: Yeast gid10 with Pro-peptide
Classification: UNKNOWN FUNCTION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-09-19
Authors: Shin, J.S., Park, S.H., Kim, L., Heo, J., Song, H.K.
PDB entry 7vgx: Neuropeptide Y Y1 Receptor (NPY1R) in Complex with G Protein and its endogeneous Peptide-Agonist Neuropeptide Y (NPY)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-09-19
Authors: Park, C., Kim, J., Jeong, H., Kang, H., Bang, I., Choi, H.-J.
PDB entry 7vgy: Melatonin receptor1-2-Iodomelatonin-Gicomplex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-09-20
Authors: Wang, Q.G., Lu, Q.Y.
PDB entry 7vgz: MT1-remalteon-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-09-20
Authors: Wang, Q.G., Lu, Q.Y.
PDB entry 7vh0: MT2-remalteon-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2021-09-20
Authors: Wang, Q.G., Lu, Q.Y.
PDB entry 7vh1: Cryo-EM structure of Machupo virus dimeric L-Z complex
Classification: VIRAL PROTEIN
Source organism: Escherichia coli (strain K12); Machupo virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-09-20
Authors: Zhang, X., Ma, J., Zhang, S.
PDB entry 7vh2: Cryo-EM structure of Machupo virus dimeric polymerase L
Classification: VIRAL PROTEIN
Source organism: Machupo virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2021-09-20
Authors: Zhang, X., Ma, J., Zhang, S.
PDB entry 7vh3: Cryo-EM structure of Machupo virus polymerase L
Classification: VIRAL PROTEIN
Source organism: Machupo virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-09-20
Authors: Ma, J., Zhang, S., Zhang, X.
PDB entry 7vh4: Crystal structure of oligoribonuclease of Escherichia coli
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-09-20
Authors: Badhwar, P., Taneja, B.
PDB entry 7vh5: Cryo-EM structure of the hexameric plasma membrane H+-ATPase in the autoinhibited state (pH 7.4, C1 symmetry)
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-09-21
Authors: Zhao, P., Zhao, C., Chen, D., Yun, C., Li, H., Bai, L.
PDB entry 7vh6: Cryo-EM structure of the hexameric plasma membrane H+-ATPase in the active state (pH 6.0, BeF3-, conformation 1, C1 symmetry)
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-09-21
Authors: Zhao, P., Zhao, C., Chen, D., Yun, C., Li, H., Bai, L.
PDB entry 7vh8: Crystal structure of SARS-CoV-2 main protease in complex with protease inhibitor PF-07321332
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2021-09-21
Authors: Zhao, Y., Zhang, Q., Yang, H., Rao, Z.
PDB entry 7vh9: Solution structure of the chimeric peptide of the first SURP domain of Human SF3A1 and the interacting region of SF1.
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2021-09-21
Authors: Muto, Y., Kuwasako, K., Takizawa, M., Kobayashi, N., Sakamoto, T.
PDB entry 7vhc: Crystal structure of the STX2a complexed with AR4A peptide
Classification: TOXIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-09-22
Authors: Senda, M., Takahashi, M., Nishikawa, K., Senda, T.
PDB entry 7vhd: Crystal structure of the STX2a complexed with R4A peptide
Classification: TOXIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-09-22
Authors: Senda, M., Takahashi, M., Nishikawa, K., Senda, T.
PDB entry 7vhe: Crystal structure of the STX2a complexed with RRRA peptide
Classification: TOXIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-22
Authors: Senda, M., Takahashi, M., Nishikawa, K., Senda, T.
PDB entry 7vhf: Crystal structure of the STX2a complexed with RRA peptide
Classification: TOXIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-09-22
Authors: Senda, M., Takahashi, M., Nishikawa, K., Senda, T.
PDB entry 7vhh: Delta variant of SARS-CoV-2 Spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-09-22
Authors: Liu, P.
PDB entry 7vhj: Furin Site deletion of SARS-CoV-2 spike
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-09-22
Authors: Wang, X., Cui, Z.
PDB entry 7vhk: S1-S2 deletion S-2P trimer(3 down)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-09-22
Authors: Wang, X., Cui, Z.
PDB entry 7vhl: Double deletion S-2P trimer(1 Up)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-09-22
Authors: Wang, X., Cui, Z.
PDB entry 7vhm: Double deletion S-2P trimer(3 down)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-09-22
Authors: Wang, L., Wang, X., Wang, X.
PDB entry 7vhn: Spike of SARS-CoV-2 spike protein(1 up)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-09-22
Authors: Wang, X.
PDB entry 7vhp: Structural insights into the membrane microdomain organization by SPFH family proteins
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2021-09-22
Authors: Ma, C.Y., Wang, C.K., Luo, D.Y., Yan, L., Yang, W.X., Li, N.N., Gao, N.
PDB entry 7vhq: Structural insights into the membrane microdomain organization by SPFH family proteins
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2021-09-22
Authors: Ma, C.Y., Wang, C.K., Luo, D.Y., Yan, L., Yang, W.X., Li, N.N., Gao, N.
PDB entry 7vhr: Apostichopus japonicus ferritin
Classification: OXIDOREDUCTASE
Source organism: Apostichopus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.756 Å
Deposited: 2021-09-22
Authors: Wu, Y., Su, X.R., Ming, T.H.
PDB entry 7vhv: Crystal structure of S. aureus D-alanine alanyl carrier protein ligase
Classification: LIGASE
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-09-23
Authors: Lee, B.J., Lee, I.-G., Im, H.G., Yoon, H.J.
PDB entry 7vhy: Crystal structure of EP300 HAT domain in complex with compound (+)-3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-09-24
Authors: Takahashi, M., Hanzawa, H.
PDB entry 7vhz: Crystal structure of EP300 HAT domain in complex with compound 7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-09-24
Authors: Takahashi, M., Hanzawa, H.
PDB entry 7vi0: Crystal structure of EP300 HAT domain in complex with compound 11
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-24
Authors: Takahashi, M., Hanzawa, H.
PDB entry 7vi4: Electron crystallographic structure of TIA-1 prion-like domain, A381T mutant
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 0.95 Å
Deposited: 2021-09-24
Authors: Takaba, K., Maki-Yonekura, S., Sekiyama, N., Imamura, K., Kodama, T., Tochio, H., Yonekura, K.
PDB entry 7vi5: Electron crystallographic structure of TIA-1 prion-like domain, wild type sequence
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.761 Å
Deposited: 2021-09-24
Authors: Takaba, K., Maki-Yonekura, S., Sekiyama, N., Imamura, K., Kodama, T., Tochio, H., Yonekura, K.
PDB entry 7vi6: Crystal structure of GH3 beta-N-acetylhexosaminidase Amuc_2109 from Akkermansia muciniphila
Classification: HYDROLASE
Source organism: Akkermansia muciniphila (strain ATCC BAA-835 / DSM 22959 / JCM 33894 / BCRC 81048 / CCUG 64013 / CIP 107961 / Muc)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-09-26
Authors: Qian, K., Yang, W., Chen, X., Wang, Y., Zhang, M., Wang, M.
PDB entry 7vi7: Crystal structure of GH3 beta-N-acetylhexosaminidase Amuc_2109 from Akkermansia muciniphila in complex with GlcNAc
Classification: HYDROLASE
Source organism: Akkermansia muciniphila (strain ATCC BAA-835 / DSM 22959 / JCM 33894 / BCRC 81048 / CCUG 64013 / CIP 107961 / Muc)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-09-26
Authors: Qian, K., Yang, W., Chen, X., Wang, Y., Zhang, M., Wang, M.
PDB entry 7vi8: Crystal structure of ChbG
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-09-26
Authors: Lee, S.Y., Park, H.H.
PDB entry 7vi9: Cryo-EM structure of bacteriophage lambda procapsid at 5.03 Angstrom
Classification: VIRUS
Source organism: Escherichia phage lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.03 Å
Deposited: 2021-09-26
Authors: Wang, J.W.
PDB entry 7via: Focused refinement of asymmetric unit of bacteriophage lambda procapsid at 3.88 Angstrom
Classification: VIRUS
Source organism: Escherichia phage lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2021-09-26
Authors: Wang, J.W.
PDB entry 7vib: Crystal structure of human ACE2 and GX/P2V RBD
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Homo sapiens; Pangolin coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-09-26
Authors: Guo, Y., Cao, W., Jia, N., Wang, W., Yuan, S., Wang, Y.
PDB entry 7vic: The crystal structure of SARS-CoV-2 3C-like protease in complex with a traditional Chinese Medicine Inhibitors
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-26
Authors: Zhong, B., Chen, B., Zhou, H., Sun, L.
PDB entry 7vid: The crystal structure of L-leucine dehydrogenase from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-09-26
Authors: Kim, S., Kang, W., Yang, J.K.
PDB entry 7vie: Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with S1P
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2021-09-26
Authors: Yu, L.Y., Gan, B., Xiao, Q.J., Ren, R.B.
PDB entry 7vif: Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with (S)-FTY720-P
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2021-09-26
Authors: Yu, L.Y., Gan, B., Xiao, Q.J., Ren, R.B.
PDB entry 7vig: Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with CBP-307
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2021-09-26
Authors: Yu, L.Y., Gan, B., Xiao, Q.J., Ren, R.B.
PDB entry 7vih: Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with CBP-307
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2021-09-26
Authors: Yu, L.Y., Gan, B., Xiao, Q.J., Ren, R.B.
PDB entry 7vii: cryoEM structure of bacteriophage lambda capsid at 5.6 Angstrom
Classification: VIRUS
Source organism: Escherichia phage lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2021-09-27
Authors: Wang, J.W.
PDB entry 7vij: Crystal structure of USP7-HUBL domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-09-27
Authors: Feng, N., Zeng, K.W.
PDB entry 7vik: Asymmetric unit of cryoEM structure of bacteriophage lambda capsid at 3.76 Angstrom
Classification: VIRUS
Source organism: Escherichia phage lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2021-09-27
Authors: Wang, J.W.
PDB entry 7vil: Solution structure of subunit epsilon of the Mycobacterium abscessus F-ATP synthase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacteroides abscessus
Experimental method: SOLUTION NMR
Deposited: 2021-09-27
Authors: Shin, J., Grueber, G., Wong, C.F.
PDB entry 7vim: The C-terminal DNA binding domain of EsrB from Edwardsiella piscicida
Classification: DNA BINDING PROTEIN
Source organism: Edwardsiella piscicida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-09-27
Authors: Liu, B., Reverter, D., Shao, S.
PDB entry 7vio: Crystal structure of recombinant horse spleen apo-R168H/L169C-Fr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-09-27
Authors: Lu, C., Peng, X., Maity, B., Ito, N., Abe, S., Wu, J., Ueno, T., Lu, D.
PDB entry 7vip: Crystal structure of Au(10EQ)-apo-R168H/L169C-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-27
Authors: Lu, C., Peng, X., Maity, B., Ito, N., Abe, S., Ueno, T., Lu, D.
PDB entry 7viq: Crystal structure of Au(50EQ)-apo-R168H/L169C-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-27
Authors: Lu, C., Peng, X., Maity, B., Ito, N., Abe, S., Ueno, T., Lu, D.
PDB entry 7vir: Crystal structure of Au(100EQ)-apo-R168H/L169C-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-27
Authors: Lu, C., Peng, X., Maity, B., Ito, N., Abe, S., Ueno, T., Lu, D.
PDB entry 7vis: Crystal structure of Au(200EQ)-apo-R168H/L169C-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-09-27
Authors: Lu, C., Peng, X., Maity, B., Ito, N., Abe, S., Ueno, T., Lu, D.
PDB entry 7vit: Crystal structure of Au(400EQ)-apo-R168H/L169C-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-27
Authors: Lu, C., Peng, X., Maity, B., Ito, N., Abe, S., Ueno, T., Lu, D.
PDB entry 7viu: Crystal structure of Au(200EQ)-apo-R168C/L169C-rHLFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-09-27
Authors: Lu, C., Peng, X., Maity, B., Ito, N., Abe, S., Ueno, T., Lu, D.
PDB entry 7viv: Crystal structure of the I73R from African Swine Fever Virus
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-09-28
Authors: Sun, L.F., Wu, Y.K.
PDB entry 7viw: Dark adapted MmCPDII during oxidized to semiquinone TR-SFX studies
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vix: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (10 ns time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7viy: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (50 ns time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7viz: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (250 ns time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj0: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (1 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj1: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (10 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj2: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (125 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj3: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (400 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj4: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (1 ms time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj5: class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (5 ms time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj6: SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the semiquinone state
Classification: LYASE
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj7: SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the fully reduced state
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj8: SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the oxidized state
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vj9: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (semiquinone dark structure)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vja: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (10 ns time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vjb: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (30 ns time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vjc: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (100 ns time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vje: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (300 ns time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vjg: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (1 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.