LiteFold/PDB huggingface dataset:
PDB entry 1yis: Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
Classification: LYASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-01-12
Authors: Symersky, J., Schormann, N., Lu, S., Zhang, Y., Karpova, E., Qiu, S., Huang, W., Cao, Z., Zhou, J., Luo, M., Arabshahi, A., McKinstry, A., Luan, C.-H., Luo, D., Johnson, D., An, J., Tsao, J., Delucas, L., Shang, Q., Gray, R., Li, S., Bray, T., Chen, Y.-J., Southeast Collaboratory for Structural Genomics (SECSG)
PDB entry 1yit: Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui
Classification: RIBOSOME/ANTIBIOTIC
Source organism: HALOARCULA MARISMORTUI; STREPTOMYCES VIRGINIAE; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-01-13
Authors: Tu, D., Blaha, G., Moore, P.B., Steitz, T.A.
PDB entry 1yiu: Itch E3 ubiquitin ligase WW3 domain
Classification: LIGASE
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2005-01-13
Authors: Shaw, A.Z., Martin-Malpartida, P., Morales, B., Yraola, F., Royo, M., Macias, M.J.
PDB entry 1yiv: Structure of myelin P2 protein from Equine spinal cord
Classification: LIPID TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-01-13
Authors: Hunter, D.J.B., MacMaster, R., Rozak, A.W., Riboldi-Tunnicliffe, A., Grifiths, I.R., Freer, A.A.
PDB entry 1yiw: X-ray Crystal Structure of a Chemically Synthesized Ubiquitin
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2005-01-13
Authors: Bang, D., Makhatadze, G.I., Tereshko, V., Kossiakoff, A.A., Kent, S.B.
PDB entry 1yix: Crystal structure of YCFH, TATD homolog from Escherichia coli K12, at 1.9 A resolution
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-01-13
Authors: Malashkevich, V.N., Xiang, D.F., Raushel, F.M., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 1yiy: Aedes aegypti kynurenine aminotransferase
Classification: TRANSFERASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-01-13
Authors: Han, Q., Gao, Y.G., Robinson, H., Ding, H., Wilson, S., Li, J.
PDB entry 1yiz: Aedes aegypti kynurenine aminotrasferase
Classification: TRANSFERASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2005-01-13
Authors: Han, Q., Gao, Y.G., Robinson, H., Ding, H., Wilson, S., Li, J.
PDB entry 1yj0: Crystal Structures of Chicken Annexin V in Complex with Zn2+
Classification: PROTEIN AND METAL BINDING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2005-01-11
Authors: Ortlund, E.A., Chai, G., Genge, B., Wu, L.N.Y., Wuthier, R.E., Lebioda, L.
PDB entry 1yj1: X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2005-01-13
Authors: Bang, D., Makhatadze, G.I., Tereshko, V., Kossiakoff, A.A., Kent, S.B.
PDB entry 1yj2: Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-01-13
Authors: Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.
PDB entry 1yj3: Crystal structure analysis of product bound methionine aminopeptidase Type 1c from Mycobacterium Tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-01-13
Authors: Addlagatta, A., Quillin, M.L., Omotoso, O., Liu, J.O., Matthews, B.W.
PDB entry 1yj4: Y305F Trichodiene Synthase
Classification: LYASE
Source organism: Fusarium sporotrichioides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-01-13
Authors: Vedula, L.S., Rynkiewicz, M.J., Pyun, H.J., Coates, R.M., Cane, D.E., Christianson, D.W.
PDB entry 1yj5: Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-01-13
Authors: Bernstein, N.K., Williams, R.S., Rakovszky, M.L., Cui, D., Green, R., Karimi-Busheri, F., Mani, R.S., Galicia, S., Koch, C.A., Cass, C.E., Durocher, D., Weinfeld, M., Glover, J.N.M.
PDB entry 1yj6: crystal structure of human glutathione S-transferase M1A-1A complexed with glutathionyl-zinc-trihydroxide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-01-13
Authors: Patskovsky, Y.V., Patskovska, L.N., Listowsky, I., Almo, S.C.
PDB entry 1yj7: Crystal structure of enteropathogenic E.coli (EPEC) type III secretion system protein EscJ
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-01-13
Authors: Yip, C.K., Kimbrough, T.G., Felise, H.B., Vuckovic, M., Thomas, N.A., Pfuetzner, R.A., Frey, E.A., Finlay, B.B., Miller, S.I., Strynadka, N.C.J.
PDB entry 1yj8: Initial structural analysis of Plasmodium falciparum Glycerol-3-phosphate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2005-01-13
Authors: Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
PDB entry 1yj9: Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22
Classification: RIBOSOME
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-01-13
Authors: Tu, D., Blaha, G., Moore, P.B., Steitz, T.A.
PDB entry 1yja: SUBTILISIN BPN' 8397+1 (E.C. 3.4.21.14) (MUTANT WITH MET 50 REPLACED BY PHE, ASN 76 REPLACED BY ASP, GLY 169 REPLACED BY ALA, GLN 206 REPLACED BY CYS, ASN 218 REPLACED BY SER AND LYS 256 REPLACED BY TYR) (M50F, N76D, G169A, Q206C, N218S, AND K256Y) IN 20% DIMETHYLFORMAMIDE
Classification: HYDROLASE (SERINE PROTEASE)
Source organism: Bacillus amyloliquefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1996-01-16
Authors: Kidd, R.D., Farber, G.K.
PDB entry 1yjb: SUBTILISIN BPN' 8397+1 (E.C. 3.4.21.14) (MUTANT WITH MET 50 REPLACED BY PHE, ASN 76 REPLACED BY ASP, GLY 169 REPLACED BY ALA, GLN 206 REPLACED BY CYS, ASN 218 REPLACED BY SER AND LYS 256 REPLACED BY TYR) (M50F, N76D, G169A, Q206C, N218S, AND K256Y) IN 35% DIMETHYLFORMAMIDE
Classification: HYDROLASE (SERINE PROTEASE)
Source organism: Bacillus amyloliquefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1996-01-16
Authors: Kidd, R.D., Farber, G.K.
PDB entry 1yjc: SUBTILISIN BPN' 8397+1 (E.C. 3.4.21.14) (MUTANT WITH MET 50 REPLACED BY PHE, ASN 76 REPLACED BY ASP, GLY 169 REPLACED BY ALA, GLN 206 REPLACED BY CYS, ASN 218 REPLACED BY SER AND LYS 256 REPLACED BY TYR) (M50F, N76D, G169A, Q206C, N218S, AND K256Y) IN 50% DIMETHYLFORMAMIDE
Classification: HYDROLASE (SERINE PROTEASE)
Source organism: Bacillus amyloliquefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1996-01-16
Authors: Kidd, R.D., Farber, G.K.
PDB entry 1yjd: Crystal structure of human CD28 in complex with the Fab fragment of a mitogenic antibody (5.11A1)
Classification: IMMUNE SYSTEM/SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2005-01-14
Authors: Evans, E.J., Esnouf, R.M., Manso-Sancho, R., Gilbert, R.J.C., James, J.R., Sorensen, P., Stuart, D.I., Davis, S.J.
PDB entry 1yje: Crystal structure of the rNGFI-B ligand-binding domain
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-01-14
Authors: Flaig, R., Greschik, H., Peluso-Iltis, C., Moras, D., Structural Proteomics in Europe (SPINE)
PDB entry 1yjf: Cyclized post-translational product for S65A Y66S (GFPhal) green fluorescent protein variant
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2005-01-14
Authors: Barondeau, D.P., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.
PDB entry 1yjg: Variable Small Protein 1 of Borrelia turicatae (VspA or Vsp1)
Classification: IMMUNE SYSTEM
Source organism: Borrelia turicatae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2005-01-14
Authors: Zueckert, W.R., Yung, B.H., Barbour, A.G., Lawson, C.L.
PDB entry 1yjh: Crystal Structure of Cimex Nitrophorin Ferrous NO Complex
Classification: OXYGEN STORAGE/TRANSPORT
Source organism: Cimex lectularius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2005-01-14
Authors: Weichsel, A., Badgandi, H., Montfort, W.R.
PDB entry 1yji: RDC-refined Solution NMR structure of reduced putidaredoxin
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas putida
Experimental method: SOLUTION NMR
Deposited: 2005-01-14
Authors: Jain, N.U., Tjioe, E., Savidor, A., Boulie, J.
PDB entry 1yjj: RDC-refined Solution NMR structure of oxidized putidaredoxin
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas putida
Experimental method: SOLUTION NMR
Deposited: 2005-01-14
Authors: Jain, N.U., Tjioe, E., Savidor, A., Boulie, J.
PDB entry 1yjk: Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase (PHM) in a New Crystal Form
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-01-14
Authors: Siebert, X., Eipper, B.A., Mains, R.E., Prigge, S.T., Blackburn, N.J., Amzel, L.M.
PDB entry 1yjl: Reduced Peptidylglycine alpha-Hydroxylating Monooxygenase in a new crystal form
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-01-14
Authors: Siebert, X., Eipper, B.A., Mains, R.E., Prigge, S.T., Blackburn, N.J., Amzel, L.M.
PDB entry 1yjm: Crystal structure of the FHA domain of mouse polynucleotide kinase in complex with an XRCC4-derived phosphopeptide.
Classification: Transferase/DNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-01-14
Authors: Bernstein, N.K., Williams, R.S., Rakovszky, M.L., Cui, D., Green, R., Karimi-Busheri, F., Mani, R.S., Galicia, S., Koch, C.A., Cass, C.E., Durocher, D., Weinfeld, M., Glover, J.N.M.
PDB entry 1yjn: Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
Classification: RIBOSOME
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2005-01-14
Authors: Tu, D., Blaha, G., Moore, P.B., Steitz, T.A.
PDB entry 1yjo: Structure of NNQQNY from yeast prion Sup35 with zinc acetate
Classification: PROTEIN BINDING
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2005-01-15
Authors: Nelson, R., Sawaya, M.R., Balbirnie, M., Madsen, A.O., Riekel, C., Grothe, R., Eisenberg, D.
PDB entry 1yjp: Structure of GNNQQNY from yeast prion Sup35
Classification: PROTEIN BINDING
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-01-15
Authors: Nelson, R., Sawaya, M.R., Balbirnie, M., Madsen, A.O., Riekel, C., Grothe, R., Eisenberg, D.
PDB entry 1yjq: Crystal structure of ketopantoate reductase in complex with NADP+
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2005-01-15
Authors: Lobley, C.M.C., Ciulli, A., Whitney, H.M., Williams, G., Smith, A.G., Abell, C., Blundell, T.L.
PDB entry 1yjr: Solution structure of the apo form of the sixth soluble domain A69P mutant of Menkes protein
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-01-15
Authors: Banci, L., Bertini, I., Cantini, F., Migliardi, M., Rosato, A., Wang, S., Structural Proteomics in Europe (SPINE)
PDB entry 1yjs: K226Q Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Glycine
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-01-15
Authors: Bhavani, S., Trivedi, V., Jala, V.R., Subramanya, H.S., Kaul, P., Purnima, K., Prakash, V., Appaji, R.N., Savithri, H.S.
PDB entry 1yjt: Solution structure of the Cu(I) form of the sixth soluble domain A69P mutant of Menkes protein
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-01-15
Authors: Banci, L., Bertini, I., Cantini, F., Migliardi, M., Rosato, A., Wang, S.
PDB entry 1yju: Solution structure of the apo form of the sixth soluble domain of Menkes protein
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-01-15
Authors: Banci, L., Bertini, I., Cantini, F., Migliardi, M., Rosato, A., Wang, S., Structural Proteomics in Europe (SPINE)
PDB entry 1yjv: Solution structure of the Cu(I) form of the sixth soluble domain of Menkes protein
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2005-01-15
Authors: Banci, L., Bertini, I., Cantini, F., Migliardi, M., Rosato, A., Wang, S.
PDB entry 1yjw: Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Haloarcula marismortui; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2005-01-15
Authors: Tu, D., Blaha, G., Moore, P.B., Steitz, T.A.
PDB entry 1yjx: Crystal structure of human B type phosphoglycerate mutase
Classification: ISOMERASE, HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2005-01-16
Authors: Wang, Y., Wei, Z., Liu, L., Gong, W.
PDB entry 1yjy: K226M Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Serine
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2005-01-16
Authors: Bhavani, S., Trivedi, V., Jala, V.R., Subramanya, H.S., Kaul, P., Purnima, K., Prakash, V., Appaji, R.N., Savithri, H.S.
PDB entry 1yjz: K226M Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-01-16
Authors: Bhavani, S., Trivedi, V., Jala, V.R., Subramanya, H.S., Kaul, P., Purnima, K., Prakash, V., Appaji, R.N., Savithri, H.S.
PDB entry 1yk0: structure of natriuretic peptide receptor-C complexed with atrial natriuretic peptide
Classification: HORMONE/GROWTH FACTOR RECEPTOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-01-16
Authors: He, X., Garcia, K.C.
PDB entry 1yk1: structure of natriuretic peptide receptor-C complexed with brain natriuretic peptide
Classification: HORMONE/GROWTH FACTOR RECEPTOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2005-01-16
Authors: He, X., Garcia, K.C.
PDB entry 1yk3: Crystal structure of Rv1347c from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-01-16
Authors: Card, G.L., Peterson, N.A., Smith, C.A., Rupp, B., Schick, B.M., Baker, E.N., TB Structural Genomics Consortium (TBSGC)
PDB entry 1yk4: Ultra-high resolution structure of Pyrococcus abyssi rubredoxin W4L/R5S
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 0.69 Å
Deposited: 2005-01-17
Authors: Bonisch, H., Schmidt, C.L., Bianco, P., Ladenstein, R.
PDB entry 1yk5: Pyrococcus abyssi rubredoxin
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2005-01-17
Authors: Bonisch, H., Schmidt, C.L., Bianco, P., Ladenstein, R.
PDB entry 1yk7: Cathepsin K complexed with a cyanopyrrolidine inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-01-17
Authors: Barrett, D.G., Deaton, D.N., Hassell, A.M., McFadyen, R.B., Miller, A.B., Miller, L.R., Shewchuk, L.M., Tavares, F.X., Willard, D.H., Wright, L.L.
PDB entry 1yk8: Cathepsin K complexed with a cyanamide-based inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2005-01-17
Authors: Barrett, D.G., Deaton, D.N., Hassell, A.M., McFadyen, R.B., Miller, A.B., Miller, L.R., Payne, J.A., Shewchuk, L.M., Willard, D.H., Wright, L.L.
PDB entry 1yk9: Crystal structure of a mutant form of the mycobacterial adenylyl cyclase Rv1625c
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2005-01-17
Authors: Ketkar, A.D., Shenoy, A.R., Ramagopal, U.A., Visweswariah, S.S., Suguna, K., TB Structural Genomics Consortium (TBSGC)
PDB entry 1yka: Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2005-01-17
Authors: Fladvad, M., Bellanda, M., Fernandes, A.P., Andresen, C., Mammi, S., Holmgren, A., Vlamis-Gardikas, A., Sunnerhagen, M.
PDB entry 1ykb: Crystal Structure of Insect Cell Expressed IL-22
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2005-01-17
Authors: Xu, T., Logsdon, N.J., Walter, M.R.
PDB entry 1ykc: human glutathione S-transferase m2-2 (E.C.2.5.1.18) complexed with glutathione-disulfide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2005-01-17
Authors: Patskovsky, Y.V., Patskovska, L.N., Listowsky, I., Almo, S.C.
PDB entry 1ykd: Crystal Structure of the Tandem GAF Domains from a Cyanobacterial Adenylyl Cyclase: Novel Modes of Ligand-Binding and Dimerization
Classification: LYASE
Source organism: Anabaena sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-01-17
Authors: Martinez, S.E., Bruder, S., Schultz, A., Zheng, N., Schultz, J.E., Beavo, J.A., Linder, J.U.
PDB entry 1yke: Structure of the mediator MED7/MED21 subcomplex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2005-01-18
Authors: Baumli, S., Hoeppner, S., Cramer, P.
PDB entry 1ykf: NADP-DEPENDENT ALCOHOL DEHYDROGENASE FROM THERMOANAEROBIUM BROCKII
Classification: OXIDOREDUCTASE
Source organism: Thermoanaerobacter brockii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1996-03-25
Authors: Korkhin, Y., Frolow, F.
PDB entry 1ykg: Solution structure of the flavodoxin-like domain from the Escherichia coli sulfite reductase
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2005-01-18
Authors: Sibille, N., Blackledge, M., Brutscher, B., Coves, J., Bersch, B.
PDB entry 1ykh: Structure of the mediator MED7/MED21 (Med7/Srb7) subcomplex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2005-01-18
Authors: Baumli, S., Hoeppner, S., Cramer, P.
PDB entry 1yki: The structure of E. coli nitroreductase bound with the antibiotic nitrofurazone
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-18
Authors: Race, P.R., Lovering, A.L., Green, R.M., Ossor, A., White, S.A., Searle, P.F., Wrighton, C.J., Hyde, E.I.
PDB entry 1ykj: A45G p-hydroxybenzoate hydroxylase with p-hydroxybenzoate bound
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-01-18
Authors: Cole, L.J., Gatti, D.L., Entsch, B., Ballou, D.P.
PDB entry 1ykk: Protocatechuate 3,4-Dioxygenase Y408C Mutant
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2005-01-18
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1ykl: Protocatechuate 3,4-Dioxygenase Y408C mutant bound to DHB
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2005-01-18
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1ykm: Protocatechuate 3,4-Dioxygenase Y408E mutant
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2005-01-18
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1ykn: Protocatechuate 3,4-dioxygenase Y408E mutant bound to DHB
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2005-01-18
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1yko: Protocatechuate 3,4-Dioxygenase Y408H mutant
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2005-01-18
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1ykp: Protocatechuate 3,4-Dioxygenase Y408H mutant bound to DHB
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2005-01-18
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1ykq: Crystal structure of Diels-Alder ribozyme
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2005-01-18
Authors: Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J.
PDB entry 1ykr: Crystal structure of cdk2 with an aminoimidazo pyridine inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-01-18
Authors: Hamdouchi, C., Zhong, B., Mendoza, J., Jaramillo, C., Zhang, F., Brooks, H.B.
PDB entry 1yks: Crystal structure of yellow fever virus NS3 helicase
Classification: HYDROLASE
Source organism: Yellow fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-01-18
Authors: Wu, J., Bera, A.K., Kuhn, R.J., Smith, J.L.
PDB entry 1ykt: Trypsin/Bpti complex mutant
Classification: HYDROLASE
Source organism: Bos taurus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-18
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1ykv: Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2005-01-18
Authors: Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J.
PDB entry 1ykw: Crystal Structure of a Novel RuBisCO-Like Protein from the Green Sulfur Bacterium Chlorobium tepidum
Classification: UNKNOWN FUNCTION
Source organism: Chlorobaculum tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-01-18
Authors: Li, H., Sawaya, M.R., Tabita, F.R., Eisenberg, D.
PDB entry 1ykx: Effect of alcohols on protein hydration
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-01-18
Authors: Deshpande, A., Nimsadkar, S., Mande, S.C.
PDB entry 1yky: Effect of alcohols on protein hydration
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-01-18
Authors: Deshpande, A., Nimsadkar, S., Mande, S.C.
PDB entry 1ykz: Effect of alcohols on protein hydration
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-01-18
Authors: Deshpande, A., Nimsadkar, S., Mande, S.C.
PDB entry 1yl0: Effect of alcohols on protein hydration
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-01-18
Authors: Deshpande, A., Nimsadkar, S., Mande, S.C.
PDB entry 1yl1: Effect of alcohols on protein hydration
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-01-18
Authors: Deshpande, A.A., Nimsadkar, S., Mande, S.C.
PDB entry 1yl5: Crystal structure of Mycobacterium tuberculosis dihydrodipicolinate reductase (RV2773C) (crystal form A)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2005-01-19
Authors: Janowski, R., Kefala, G., Weiss, M.S., TB Structural Genomics Consortium (TBSGC)
PDB entry 1yl6: crystal structure of Mycobacterium tuberculosis dihydrodipicolinate reductase (Rv2773c) (crystal form B)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2005-01-19
Authors: Janowski, R., Kefala, G., Weiss, M.S., TB Structural Genomics Consortium (TBSGC)
PDB entry 1yl7: the crystal structure of Mycobacterium tuberculosis dihydrodipicolinate reductase (Rv2773c) in complex with NADH (crystal form C)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2005-01-19
Authors: Janowski, R., Kefala, G., Weiss, M.S., TB Structural Genomics Consortium (TBSGC)
PDB entry 1yl8: 3D Solution Structure of [Tyr3]Octreotate derivatives in DMSO
Classification: NEUROPEPTIDE
Experimental method: SOLUTION NMR
Deposited: 2005-01-19
Authors: Spyroulias, G.A., Galanis, A.S., Petrou, C., Vahliotis, D., Sotiriou, P., Nikolopoulou, A., Nock, B., Maina, T., Cordopatis, P.
PDB entry 1yl9: 3D Solution Structure of [Tyr3]Octreotate derivatives in DMSO
Classification: NEUROPEPTIDE
Experimental method: SOLUTION NMR
Deposited: 2005-01-19
Authors: Spyroulias, G.A., Galanis, A.S., Petrou, C., Vahliotis, D., Sotiriou, P., Nikolopoulou, A., Nock, B., Maina, T., Cordopatis, P.
PDB entry 1yla: Ubiquitin-conjugating enzyme E2-25 kDa (Huntington interacting protein 2)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2005-01-19
Authors: Choe, J., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Bochkarev, A., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-paganon, S., Structural Genomics Consortium (SGC)
PDB entry 1ylb: NMR solution structure of the reduced spinach plastocyanin
Classification: ELECTRON TRANSPORT
Source organism: Spinacia oleracea
Experimental method: SOLUTION NMR
Deposited: 2005-01-19
Authors: Musiani, F., Dikiy, A., Semenov, A.Y., Ciurli, S.
PDB entry 1ylc: Trypsin/BPTI complex mutant
Classification: HYDROLASE/INHIBITOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-19
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1yld: Trypsin/BPTI complex mutant
Classification: HYDROLASE/INHIBITOR
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-19
Authors: Brown, C.K., Ohlendorf, D.H.
PDB entry 1yle: The structure of arginine/ornithine succinyltransferase subunit AI from Pseudomonas aeruginosa.
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-19
Authors: Midwest Center for Structural Genomics (MCSG)
PDB entry 1ylf: X-ray crystal structure of BC1842 protein from Bacillus cereus, a member of the Rrf2 family of putative transcription regulators.
Classification: TRANSCRIPTION REGULATOR
Source organism: Bacillus cereus ATCC 14579
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2005-01-19
Authors: Osipiuk, J., Wu, R., Moy, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 1ylg: NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-01-19
Authors: Maris, C., Masse, J., Allain, F.H., Chester, A., Navaratnam, N.
PDB entry 1ylh: Crystal Structure of Phosphoenolpyruvate Carboxykinase from Actinobaccilus succinogenes in Complex with Manganese and Pyruvate
Classification: LYASE
Source organism: Actinobacillus succinogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-19
Authors: Leduc, Y.A., Prasad, L., Laivenieks, M., Zeikus, J.G., Delbaere, L.T.
PDB entry 1yli: Crystal structure of HI0827, a hexameric broad specificity acyl-coenzyme A thioesterase
Classification: HYDROLASE
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2005-01-19
Authors: Structure 2 Function Project (S2F)
PDB entry 1ylj: Atomic resolution structure of CTX-M-9 beta-lactamase
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2005-01-19
Authors: Chen, Y., Delmas, J., Sirot, J., Shoichet, B., Bonnet, R.
PDB entry 1ylk: Crystal Structure of Rv1284 from Mycobacterium tuberculosis in Complex with Thiocyanate
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-01-19
Authors: Covarrubias, A.S., Larsson, A.M., Hogbom, M., Lindberg, J., Bergfors, T., Bjorkelid, C., Mowbray, S.L., Unge, T., Jones, T.A., Structural Proteomics in Europe (SPINE)
PDB entry 1yll: Crystal Structure of the Conserved Protein of Unknown Function PA5104 from Pseudomonas aeruginosa PAO1
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2005-01-19
Authors: Midwest Center for Structural Genomics (MCSG)
PDB entry 1ylm: Structure of Cytosolic Protein of Unknown Function YutE from Bacillus subtilis
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2005-01-19
Authors: Midwest Center for Structural Genomics (MCSG)
PDB entry 1yln: The Crystal Structure of the Protein of Unknown Function VCA0042 from Vibrio cholerae O1
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Vibrio cholerae O1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-01-19
Authors: Zhang, R., Zhou, M., Moy, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 1ylo: Crystal Structure of Protein of Unknown Function (Possible Aminopeptidase) S2589 from Shigella flexneri 2a str. 2457T
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Shigella flexneri 2a str. 2457T
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2005-01-19
Authors: Nocek, B.P., Midwest Center for Structural Genomics (MCSG)
PDB entry 1ylp: Atomic resolution structure of CTX-M-27 beta-lactamase
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2005-01-19
Authors: Chen, Y., Delmas, J., Sirot, J., Shoichet, B., Bonnet, R.
PDB entry 1ylq: Crystal structure of putative nucleotidyltransferase
Classification: TRANSFERASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.016 Å
Deposited: 2005-01-19
Authors: Chang, C., Joachimiak, A., Skarina, T., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 1ylr: The structure of E.coli nitroreductase with bound acetate, crystal form 1
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-19
Authors: Race, P.R., Lovering, A.L., Green, R.M., Ossor, A., White, S.A., Searle, P.F., Wrighton, C.J., Hyde, E.I.
PDB entry 1yls: Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2005-01-19
Authors: Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J.
PDB entry 1ylt: Atomic resolution structure of CTX-M-14 beta-lactamase
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2005-01-19
Authors: Chen, Y., Delmas, J., Sirot, J., Shoichet, B., Bonnet, R.
PDB entry 1ylu: The structure of E. coli nitroreductase with bound acetate, crystal form 2
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-01-19
Authors: Race, P.R., Lovering, A.L., Green, R.M., Ossor, A., White, S.A., Searle, P.F., Wrighton, C.J., Hyde, E.I.
PDB entry 1ylv: SCHIFF-BASE COMPLEX OF YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE WITH LAEVULINIC ACID
Classification: LYASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 1999-02-22
Authors: Erskine, P.T., Newbold, R., Roper, J., Coker, A., Warren, M.J., Shoolingin-Jordan, P.M., Wood, S.P., Cooper, J.B.
PDB entry 1ylw: X-ray structure of CTX-M-16 beta-lactamase
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2005-01-19
Authors: Chen, Y., Delmas, J., Sirot, J., Shoichet, B., Bonnet, R.
PDB entry 1ylx: Crystal Structure of a Protein of Unknown Function from Bacillus stearothermophilus
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-01-19
Authors: Midwest Center for Structural Genomics (MCSG)
PDB entry 1yly: X-ray crystallographic structure of CTX-M-9 beta-lactamase complexed with ceftazidime-like boronic acid
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2005-01-19
Authors: Chen, Y., Shoichet, B., Bonnet, R.
PDB entry 1ylz: X-ray crystallographic structure of CTX-M-14 beta-lactamase complexed with ceftazidime-like boronic acid
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2005-01-19
Authors: Chen, Y., Shoichet, B., Bonnet, R.
PDB entry 1ym0: Crystal Structure of Earthworm Fibrinolytic Enzyme Component B: a Novel, Glycosylated Two-chained Trypsin
Classification: HYDROLASE
Source organism: Eisenia fetida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2005-01-20
Authors: Wang, F., Wang, C., Li, M., Zhang, J.P., Gui, L.L., An, X.M., Chang, W.R.
PDB entry 1ym1: X-ray crystallographic structure of CTX-M-9 beta-lactamase complexed with a boronic acid inhibitor (SM2)
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2005-01-20
Authors: Chen, Y., Shoichet, B., Bonnet, R.
PDB entry 1ym2: Crystal structure of human beta secretase complexed with NVP-AUR200
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2005-01-20
Authors: Hanessian, S., Yun, H., Hou, Y., Yang, G., Bayrakdarian, M., Therrien, E., Moitessier, N., Roggo, S., Veenstra, S.
PDB entry 1ym3: Crystal Structure of carbonic anhydrase RV3588c from Mycobacterium tuberculosis
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2005-01-20
Authors: Covarrubias, A.S., Larsson, A.M., Hogbom, M., Lindberg, J., Bergfors, T., Bjorkelid, C., Mowbray, S.L., Unge, T., Jones, T.A., Structural Proteomics in Europe (SPINE)
PDB entry 1ym4: Crystal structure of human beta secretase complexed with NVP-AMK640
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2005-01-20
Authors: Hanessian, S., Yun, H., Hou, Y., Yang, G., Bayrakdarian, M., Therrien, E., Moitessier, N., Roggo, S., Veenstra, S.
PDB entry 1ym5: Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2005-01-20
Authors: Liger, D., Quevillon-Cheruel, S., Sorel, I., Bremang, M., Blondeau, K., Aboulfath, I., Janin, J., Van Tilbeurgh, H., Leulliot, N., Paris-Sud Yeast Structural Genomics (YSG)
PDB entry 1ym7: G Protein-Coupled Receptor Kinase 2 (GRK2)
Classification: TRANSFERASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2005-01-20
Authors: Lodowski, D.T., Barnhill, J.F., Pyskadlo, R.M., Ghirlando, R., Sterne-Marr, R., Tesmer, J.J.G.
PDB entry 1ym8: crystal structure of GZZ shows up puckering of the proline ring in the Xaa position.
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2005-01-20
Authors: Schumacher, M.A., Mizuno, K., Bachinger, H.P.
PDB entry 1ym9: Crystal structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfinic form
Classification: HYDROLASE, CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2005-01-20
Authors: Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.
PDB entry 1yma: STRUCTURAL CHARACTERIZATION OF HEME LIGATION IN THE HIS64-->TYR VARIANT OF MYOGLOBIN
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1993-09-27
Authors: Maurus, R., Brayer, G.D.
PDB entry 1ymb: HIGH RESOLUTION STUDY OF THE THREE-DIMENSIONAL STRUCTURE OF HORSE HEART METMYOGLOBIN
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1993-09-27
Authors: Evans, S.V., Brayer, G.D.
PDB entry 1ymc: THREE-DIMENSIONAL STRUCTURE OF CYANOMET-SULFMYOGLOBIN C
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1993-09-27
Authors: Evans, S.V., Brayer, G.D.
PDB entry 1ymd: Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfonic form
Classification: HYDROLASE, CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-20
Authors: Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.
PDB entry 1yme: STRUCTURE OF CARBOXYPEPTIDASE
Classification: CARBOXYPEPTIDASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 1996-07-15
Authors: Greenblatt, H.M., Tucker, P.A., Shoham, G.
PDB entry 1ymg: The Channel Architecture of Aquaporin O at 2.2 Angstrom Resolution
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2005-01-20
Authors: Harries, W.E.C., Akhavan, D., Miercke, L.J.W., Khademi, S., Stroud, R.M.
PDB entry 1ymh: anti-HCV Fab 19D9D6 complexed with protein L (PpL) mutant A66W
Classification: IMMUNE SYSTEM
Source organism: Finegoldia magna; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2005-01-21
Authors: Granata, V., Housden, N.G., Harrison, S., Jolivet-Reynaud, C., Gore, M.G., Stura, E.A.
PDB entry 1ymk: Crystal Structure of the CDC25B phosphatase catalytic domain in the apo form
Classification: HYDROLASE, CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-21
Authors: Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.
PDB entry 1yml: Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfenic form
Classification: HYDROLASE, CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-21
Authors: Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.
PDB entry 1ymm: TCR/HLA-DR2b/MBP-peptide complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2005-01-21
Authors: Hahn, M., Nicholson, M.J., Pyrdol, J., Wucherpfennig, K.W.
PDB entry 1ymn: The study of reductive unfolding pathways of RNase A (Y92L mutant)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2005-01-21
Authors: Xu, G., Narayan, M., Kurinov, I., Ripoll, D.R., Welker, E., Khalili, M., Ealick, S.E., Scheraga, H.A.
PDB entry 1ymo: Solution structure of the P2b-P3 pseudoknot from human telomerase RNA
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-01-21
Authors: Theimer, C.A., Blois, C.A., Feigon, J.
PDB entry 1ymp: The Crystal Structure of a Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve an Ankyrin Fold
Classification: TRANSCRIPTION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-01-21
Authors: Lubman, O.Y., Kopan, R., Waksman, G., Korolev, S.
PDB entry 1ymq: HAD Superfamily Phosphotransferase Substrate Diversification: Structure and Function Analysis of the HAD Subclass IIB Sugar Phosphatase BT4131
Classification: TRANSFERASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2005-01-21
Authors: Lu, Z., Dunaway-Mariano, D., Allen, K.N.
PDB entry 1ymr: The study of reductive unfolding pathways of RNase A (Y92A mutant)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-01-21
Authors: Xu, G., Narayan, M., Kurinov, I., Ripoll, D.R., Welker, E., Khalili, M., Ealick, S.E., Scheraga, H.A.
PDB entry 1yms: X-ray crystallographic structure of CTX-M-9 beta-lactamase complexed with nafcinin-like boronic acid inhibitor
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2005-01-21
Authors: Chen, Y., Shoichet, B., Bonnet, R.
PDB entry 1ymt: Mouse SF-1 LBD
Classification: TRANSCRIPTION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2005-01-21
Authors: Krylova, I.N., Sablin, E.P., Moore, J., Xu, R.X., Waitt, G.M., Juzumiene, D., Bynum, J.M., Fletterick, R.J., Willson, T.M., Ingraham, H.A.
PDB entry 1ymu: SIGNAL TRANSDUCTION PROTEIN CHEY MUTANT WITH MET 17 REPLACED BY GLY (M17G)
Classification: CHEMOTAXIS
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1995-12-14
Authors: Bellsolell, L., Coll, M.
PDB entry 1ymv: SIGNAL TRANSDUCTION PROTEIN CHEY MUTANT WITH PHE 14 REPLACED BY GLY, SER 15 REPLACED BY GLY, AND MET 17 REPLACED BY GLY
Classification: CHEMOTAXIS
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1995-12-14
Authors: Bellsolell, L., Coll, M.
PDB entry 1ymw: The study of reductive unfolding pathways of RNase A (Y92G mutant)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2005-01-21
Authors: Xu, G., Narayan, M., Kurinov, I., Ripoll, D.R., Welker, E., Khalili, M., Ealick, S.E., Scheraga, H.A.
PDB entry 1ymx: X-ray crystallographic structure of CTX-M-9 beta-lactamase covalently linked to cefoxitin
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-21
Authors: Chen, Y., Shoichet, B., Bonnet, R.
PDB entry 1ymy: Crystal Structure of the N-Acetylglucosamine-6-phosphate deacetylase from Escherichia coli K12
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2005-01-21
Authors: Fedorov, A.A., Fedorov, E.V., Xiang, D.F., Raushel, F.M., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 1ymz: CC45, An Artificial WW Domain Designed Using Statistical Coupling Analysis
Classification: UNKNOWN FUNCTION
Experimental method: SOLUTION NMR
Deposited: 2005-01-22
Authors: Socolich, M., Lockless, S.W., Russ, W.P., Lee, H., Gardner, K.H., Ranganathan, R.
PDB entry 1yn1: Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-01-23
Authors: Campbell, D.O., Legault, P.
PDB entry 1yn2: Solution structure of the Neurospora VS ribozyme stem-loop V in the presence of MgCl2 with modeling of bound manganese ions
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2005-01-23
Authors: Campbell, D.O., Legault, P.
PDB entry 1yn3: Crystal Structures of EAP Domains from Staphylococcus aureus Reveal an Unexpected Homology to Bacterial Superantigens
Classification: TOXIN, PROTEIN BINDING
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2005-01-23
Authors: Geisbrecht, B.V., Hamaoka, B.Y., Perman, B., Zemla, A., Leahy, D.J.
PDB entry 1yn4: Crystal Structures of EAP Domains from Staphylococcus aureus Reveal an Unexpected Homology to Bacterial Superantigens
Classification: UNKNOWN FUNCTION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2005-01-23
Authors: Geisbrecht, B.V., Hamaoka, B.Y., Perman, B., Zemla, A., Leahy, D.J.
PDB entry 1yn5: Crystal Structures of EAP Domains from Staphylococcus aureus Reveal an Unexpected Homology to Bacterial Superantigens
Classification: UNKNOWN FUNCTION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-01-23
Authors: Geisbrecht, B.V., Hamaoka, B.Y., Perman, B., Zemla, A., Leahy, D.J.
PDB entry 1yn6: Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a peptide from the influenza A acid polymerase
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-01-23
Authors: Turner, S.J., Kedzierska, K., Komodromou, H., La Gruta, N.L., Dunstone, M.A., Webb, A.I., Webby, R., Walden, H., Xie, W., McCluskey, J., Purcell, A.W., Rossjohn, J., Doherty, P.C.
PDB entry 1yn7: Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a mutated peptide (R7A) of the influenza A acid polymerase
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2005-01-24
Authors: Turner, S.J., Kedzierska, K., Komodromou, H., La Gruta, N.L., Dunstone, M.A., Webb, A.I., Webby, R., Walden, H., Xie, W., McCluskey, J., Purcell, A.W., Rossjohn, J., Doherty, P.C.
PDB entry 1yn8: SH3 domain of yeast NBP2
Classification: UNKNOWN FUNCTION
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2005-01-24
Authors: Kursula, P., Kursula, I., Song, Y.H., Wilmanns, M.