LiteFold/PDB huggingface dataset:
PDB entry 8z58: Crystal structure of human N141V-SIRT5 in complex with succinylated Prx1 fragment
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.405 Å
Deposited: 2024-04-18
Authors: Yokoyama, T., Takayama, Y.
PDB entry 8z59: The X-Ray crystal structure of multicopper oxidase from Sulfurimonas sp.
Classification: OXIDOREDUCTASE
Source organism: Sulfurimonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-04-18
Authors: Wang, Y., Qian, H.
PDB entry 8z5a: Crystal Structure of Nur77 LBD in complex with NLM1
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.179 Å
Deposited: 2024-04-18
Authors: Hong, W.B., Lin, T.W., Chen, X.Q.
PDB entry 8z5b: The X-Ray crystal structure of multicopper oxidase from Bacillus freudenreichii
Classification: OXIDOREDUCTASE
Source organism: Bacillus freudenreichii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-04-18
Authors: Qian, H., Wang, Y.
PDB entry 8z5c: Cystal structure of beta-ketoacyl-ACP synthase FabF from Helicobacter pylori
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-04-18
Authors: Zhang, L., Huang, Y.Z.
PDB entry 8z5d: Crystal structure of beta-ketoacyl-ACP synthase FabF K336A in complex with hexanoyl-ACP from Helicobacter pylori
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-18
Authors: Zhang, L., Huang, Y.Z.
PDB entry 8z5e: Crystal structure of beta-ketoacyl-ACP synthase FabF K336A in complex with octanoyl-ACP from Helicobacter pylori
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-18
Authors: Zhang, L., Huang, Y.Z.
PDB entry 8z5f: Crystal structure of beta-ketoacyl-ACP synthase FabF K336A in complex with decanoyl-ACP from Helicobacter pylori
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-18
Authors: Zhang, L., Huang, Y.Z.
PDB entry 8z5g: Cryo-EM structure of E.coli SPFH-NfeD family protein complex QmcA-YbbJ
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-04-18
Authors: Qiao, Z., Gao, Y.G.
PDB entry 8z5h: Cryo-EM structure of the hGPR68-Gs complex in pH6.0
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-18
Authors: Zhong, Y.N., Guo, L.L., Yang, F., Sun, J.P.
PDB entry 8z5j: Beta-catenin Crystal Structure
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-04-18
Authors: Tim, F.
PDB entry 8z5k: Solution structure of PA2072 CHASE4 monomer.
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: SOLUTION NMR
Deposited: 2024-04-18
Authors: Zhang, Y., Lin, Z., Zhang, J.F.
PDB entry 8z5l: Crystal structure of metallo-beta-lactamse, IMP-1, complexed with a quinolinone-based inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-04-18
Authors: Kamo, T., Kuroda, K., Nimura, S., Guo, Y., Kondo, S., Nukaga, M., Hoshino, T.
PDB entry 8z5m: human phosphorylase kinase alpha/gamma/delta subcomplex - inactive state
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2024-04-18
Authors: Ma, R., Yan, K.
PDB entry 8z5n: Cryo-EM structure of the LPHT ring
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z5p: human phosphorylase kinase - inactive state
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-04-18
Authors: Ma, R., Yan, K.
PDB entry 8z5q: human phosphorylase kinase - inactive state
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.24 Å
Deposited: 2024-04-18
Authors: Ma, R., Yan, K.
PDB entry 8z5r: human phosphorylase kinase alpha/gamma/delta subcomplex - phosphorylation and Ca2+ bound state
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-04-18
Authors: Ma, R., Yan, K.
PDB entry 8z5s: Cryo-EM structure of the proximal rod-export apparatus of the polar flagellar motor
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z5t: human phosphorylase kinase - phosphorylation and Ca2+ bound state
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-04-18
Authors: Ma, R., Yan, K.
PDB entry 8z5u: Cryo-EM structure of the rod-export apparatus with partial hook within the polar flagellar motor
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z5v: Cryo-EM structure of the MS ring (C34) within the polar flagellar motor
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z5w: Cryo-EM structure of the LRR protein within the polar flagellar motor
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z5x: Cryo-EM structure of the MS ring with the proximal rod and the export apparatus (C1) within the polar flagellar motor
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z5y: Cryo-EM structure of the L-hook of the polar flagellum
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z5z: Cryo-EM structure of the R-hook of the polar flagellum
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z60: Cryo-EM structure of the polar flagellar motor-hook complex
Classification: MOTOR PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-04-18
Authors: Zhang, L., Tan, J.X., Zhou, Y., Zhu, Y.Q.
PDB entry 8z61: Human beta-catenin crystal structure
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-18
Authors: Tim, F.
PDB entry 8z62: Crystal structure of rRNA (uracil-C5)-methyltransferase from Pyrococcus horikoshii OT3
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-04-18
Authors: Saha, S., Kanaujia, S.P.
PDB entry 8z63: alpha-L-fucosidase from Pontiella sulfatireligans F21
Classification: HYDROLASE
Source organism: Pontiella sulfatireligans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2024-04-18
Authors: Zhao, P., Bai, L., Wang, S.
PDB entry 8z64: Cryo-EM structure of SARS-CoV-2 D614G S with three ACE2 receptors binding (RB3) in prefusion conformation (focused refinement of NTD-SD1-RBD-ACE2)
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-04-18
Authors: Liu, Z., Xing, L.
PDB entry 8z65: Cryo-EM structure of the hGPR4-Gs complex in pH7.2
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-04-18
Authors: Zhong, Y.N., Guo, L.L.
PDB entry 8z66: Cryo-EM structure of the receptor of hGPR4-Gs complex in pH7.2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-04-18
Authors: Zhong, Y.N., Guo, L.L.
PDB entry 8z67: Cryo-EM structure of the hGPR68-Gs complex in pH6.8
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-04-18
Authors: Zhong, Y.N., Guo, L.L., Yang, F., Sun, J.P.
PDB entry 8z68: Cryo-EM structure of the hGPR68-Gs complex in pH6.8
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2024-04-18
Authors: Zhong, Y.N., Guo, L.L., Yang, F., Sun, J.P.
PDB entry 8z69: Crystal Structure of the second bromodomain of human BRD2 BD2 in complex with the inhibitor Y13195
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-04-18
Authors: Li, J., Hu, Q., Xu, H., Zhao, X., Zhang, C., Zhu, R., Wu, X., Zhang, Y., Xu, Y.
PDB entry 8z6a: Cryo-EM structure of SARS-CoV-2 D614G S with three ACE2 receptors binding (RB3) in prefusion conformation
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-04-18
Authors: Liu, Z., Xing, L.
PDB entry 8z6b: Structure of Polycystin-1/Polycystin-2 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-18
Authors: Chen, M.Y., Su, Q., Shi, Y.G.
PDB entry 8z6c: Crystal structure of HDGFRP2 PWWP domain in complex with 4-(4-bromo-1H-pyrazol-3-yl) pyridine
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-04-19
Authors: Wei, X., Ruan, K.
PDB entry 8z6d: Structure of transcriptional regulator TetR1
Classification: DNA BINDING PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-04-19
Authors: He, W., Wen, Y.
PDB entry 8z6e: Structure of transcriptional regulator TetR
Classification: DNA BINDING PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-04-19
Authors: He, W., Wen, Y.
PDB entry 8z6f: Structure of polycystin-1/polycystin-2 complex with PI(4)P-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-04-19
Authors: Chen, M.Y., Su, Q., Shi, Y.G.
PDB entry 8z6g: the AlgU-MucAcyto complex structure in Pseudomonas aeruginosa
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1011 Å
Deposited: 2024-04-19
Authors: Li, T., Wang, Y.Z., Bao, R.
PDB entry 8z6h: Structure of Polycystin-1/Polycystin-2 complex with Phosphatidylglycerol-bound
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-19
Authors: Chen, M.Y., Su, Q., Shi, Y.G.
PDB entry 8z6i: SFX structure of CraCRY 100 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-19
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z6j: SFX structure of CraCRY 133 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-19
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z6k: SFX structure of CraCRY 166 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-19
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z6n: The dimerization structure of CHASE4 domain of PA2072 (alpha form)
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-04-19
Authors: Zhang, Y., Lin, Z., Xiao, Y.J.
PDB entry 8z6o: Crystal structure of HDGFRP2 PWWP domain in complex with Varenicline
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-04-19
Authors: Wei, X., Ruan, K.
PDB entry 8z6p: Crystal structure of Procerain-B from Calotropis gigantea
Classification: HYDROLASE
Source organism: Calotropis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-04-19
Authors: Kumar, A., Jamdar, S.N., Makde, R.D.
PDB entry 8z6q: SARS-CoV-2 XBB.1.16 Spike in complex with CYFN1006-1(S-CYFN1006-1 dimer trimer).
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.41 Å
Deposited: 2024-04-19
Authors: Wang, Y.J., Sun, L.
PDB entry 8z6r: Structure of XBB.1.16 S trimer with 3 down-RBDs complex with antibody CYFN1006-1.
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-04-19
Authors: Wang, Y.J., Sun, L.
PDB entry 8z6s: Structure of XBB.1.16 S trimer with 2 down-RBDs complex with antibody CYFN1006-1.
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-04-19
Authors: Wang, Y.J., Sun, L.
PDB entry 8z6t: Structure of XBB.1.16 RBD in complex with antibody CYFN1006-1.
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-04-19
Authors: Wang, Y.J., Sun, L.
PDB entry 8z6u: SARS-CoV-2 EG.5.1 Spike in complex with CYFN1006-2(S-CYFN1006-2 dimer trimer).
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2024-04-19
Authors: Wang, Y.J., Sun, L.
PDB entry 8z6w: Structure of EG.5.1 S trimer with 3 down-RBDs complex with antibody CYFN1006-2.
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-04-19
Authors: Wang, Y.J., Sun, L.
PDB entry 8z6x: Structure of EG.5.1 RBD in complex with antibody CYFN1006-2.
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-04-19
Authors: Wang, Y.J., Sun, L.
PDB entry 8z6y: Medium-chain dehydrogenase/reductase MrADH mutant-V164K&V221A&H333K
Classification: OXIDOREDUCTASE
Source organism: Modestobacter roseus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2024-04-19
Authors: Xue, J.Y., Xu, G.C., Ni, Y.
PDB entry 8z6z: Medium-chain dehydrogenase/reductase MrADH-WT
Classification: OXIDOREDUCTASE
Source organism: Modestobacter roseus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-04-19
Authors: Xue, J.Y., Xu, G.C., Ni, Y.
PDB entry 8z70: State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus; Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-04-19
Authors: Cheng, J., Wu, C.L., Li, J.X., Zhang, X.Z.
PDB entry 8z71: State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus; Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-04-19
Authors: Cheng, J., Wu, C.L., Li, J.X., Zhang, X.Z.
PDB entry 8z73: Crystal Structure of AF9 in complex with H3K9la peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.906 Å
Deposited: 2024-04-19
Authors: Li, H.T., Ma, H.D.
PDB entry 8z74: Cryo-EM structure of APJR complex with agonistic antibody
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-04-19
Authors: Yue, Y., Liu, L.E., Wu, L.J., Xu, F.
PDB entry 8z75: The structure of non-activated thiocyanate dehydrogenase from Pelomicrobium methylotrophicum (pmTcDH)
Classification: OXIDOREDUCTASE
Source organism: Pelomicrobium methylotrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-04-19
Authors: Varfolomeeva, L.A., Solovieva, A.Y., Shipkov, N.S., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8z76: The structure of thiocyanate dehydrogenase from Pelomicrobium methylotrophicum (pmTcDH), activated by crystals soaking with 1 mM CuCl2 during 6 months
Classification: OXIDOREDUCTASE
Source organism: Pelomicrobium methylotrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-19
Authors: Varfolomeeva, L.A., Solovieva, A.Y., Shipkov, N.S., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8z77: The structure of thiocyanate dehydrogenase from Pelomicrobium methylotrophicum (pmTcDH), activated by crystals soaking with 1 mM CuCl2 and Na ascorbate during 12 hours
Classification: OXIDOREDUCTASE
Source organism: Pelomicrobium methylotrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-19
Authors: Varfolomeeva, L.A., Solovieva, A.Y., Shipkov, N.S., Dergousova, N.I., Minyaev, M.E., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8z78: Crystal structure of Procerain-B from Calotropis gigantea with glycerol
Classification: HYDROLASE
Source organism: Calotropis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-19
Authors: Kumar, A., Jamdar, S.N., Makde, R.D.
PDB entry 8z79: Crystal structure of 5-N-alpha-glycinylthymidine (N-alpha-GlyT) FAD-dependent lyase gp47/NGTO from Pseudomonas phage PaMx11 in complex with dsDNA
Classification: OXIDOREDUCTASE/DNA
Source organism: Pseudomonas phage PaMx11; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-04-19
Authors: Wen, Y., Guo, W.T., Wu, B.X.
PDB entry 8z7a: Open Barrel Structure of Translin from Trichoderma virens
Classification: DNA BINDING PROTEIN
Source organism: Hypocrea virens (strain Gv29-8 / FGSC 10586)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-04-19
Authors: Kumari, S., Gupta, G.D.
PDB entry 8z7b: Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of NTD-SD1-RBD-ACE2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-19
Authors: Liu, Z., Xing, L.
PDB entry 8z7c: Structure of G9a in complex with compound 7i
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-04-20
Authors: Niwa, H., Shirai, F., Sato, S., Nishigaya, Y., Ihara, K., Shirouzu, M., Umehara, T.
PDB entry 8z7d: Structure of G9a in complex with compound 9a
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.581 Å
Deposited: 2024-04-20
Authors: Niwa, H., Shirai, F., Sato, S., Nishigaya, Y., Ihara, K., Shirouzu, M., Umehara, T.
PDB entry 8z7e: Structure of G9a in complex with compound 9b
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.545 Å
Deposited: 2024-04-20
Authors: Niwa, H., Shirai, F., Sato, S., Nishigaya, Y., Ihara, K., Shirouzu, M., Umehara, T.
PDB entry 8z7g: Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of intact S2)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-04-20
Authors: Liu, Z., Xing, L.
PDB entry 8z7h: PRMT1-Decamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-04-20
Authors: EswarKumar, N., Wang, C.H.
PDB entry 8z7j: Cryo-EM structure of APJR-Gi complex with agonistic antibody
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-04-20
Authors: Yue, Y., Liu, L.E., Wu, L.J., Xu, F.
PDB entry 8z7k: Crystal structure of Hemolysin co-regulated protein 1 (Hcp1) VariantB from Burkholderia pseudomallei
Classification: PROTEIN TRANSPORT
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.582 Å
Deposited: 2024-04-20
Authors: Lebedev, A.A., Charoenwattanasatien, R., Tandhavanant, S., Chantratita, N.
PDB entry 8z7l: Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of S-bottom)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-04-20
Authors: Liu, Z., Xing, L.
PDB entry 8z7m: The crystal structure of AFM-1
Classification: METAL BINDING PROTEIN
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-20
Authors: Xiao, Y.J., Wang, Z.F.
PDB entry 8z7n: Structure of HIV-1 CH119 SOSIP.664 trimer in complex with CD4 molecules
Classification: VIRUS
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-04-20
Authors: Li, D., Wang, T.
PDB entry 8z7o: PRMT1-Filament
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-04-20
Authors: EswarKumar, N., Wang, C.H.
PDB entry 8z7p: Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC)
Classification: VIRAL PROTEIN/HTDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-04-20
Authors: Liu, Z., Xing, L.
PDB entry 8z7r: SLC19A3 apo structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z7s: SLC19A3-thiamine outward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z7t: SLC19A3-Pyridoxine outward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z7u: SLC19A3-Fedratinib outward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z7v: Slc19A3-Amprolium outward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z7w: SLC19A3-Metformin outward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z7x: SLC19A3-Thiamine inward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z7y: SLC19A3-Fedratinib inward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z7z: SLC19A2-Thiamine inward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z80: SLC19A2-Pyridoxine inward structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-04-21
Authors: Li, P.P., Zhu, Z.N., Wang, Y., Gao, P., Qu, Q.H.
PDB entry 8z81: Photosynthetic LH2-LH1 complex from the purple bacterium Halorhodospira halophila
Classification: PHOTOSYNTHESIS
Source organism: Halorhodospira halophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-04-21
Authors: Tani, K., Nagashima, K.V.P., Kanno, R., Hiwatashi, N., Kawakami, M., Nakata, K., Nagashima, S., Inoue, K., Takaichi, S., Purba, E.R., Hall, M., Yu, L.-J., Madigan, M.T., Mizoguchi, A., Humbel, B.M., Kimura, Y., Wang-Otomo, Z.-Y.
PDB entry 8z82: Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila
Classification: PHOTOSYNTHESIS
Source organism: Halorhodospira halophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-04-21
Authors: Tani, K., Kanno, R., Nagashima, K.V.P., Hiwatashi, N., Kawakami, M., Nakata, K., Nagashima, S., Inoue, K., Takaichi, S., Purba, E.R., Hall, M., Yu, L.-J., Madigan, M.T., Mizoguchi, A., Humbel, B.M., Kimura, Y., Wang-Otomo, Z.-Y.
PDB entry 8z83: Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Classification: PHOTOSYNTHESIS
Source organism: Halorhodospira halophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-04-21
Authors: Tani, K., Kanno, R., Nagashima, K.V.P., Hiwatashi, N., Kawakami, M., Nakata, K., Nagashima, S., Inoue, K., Takaichi, S., Purba, E.R., Hall, M., Yu, L.-J., Madigan, M.T., Mizoguchi, A., Humbel, B.M., Kimura, Y., Wang-Otomo, Z.-Y.
PDB entry 8z84: The dimerization structure of CHASE4 domain of PA2072(beta form).
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-04-21
Authors: Zhang, Y., Lin, Z.
PDB entry 8z85: Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 1
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-04-21
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z86: BA.5 RBD in complex with CR9
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2024-04-21
Authors: Feng, L.L.
PDB entry 8z87: Cryo-EM structure of the CHBA-bound human HCAR1-Gi1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-04-21
Authors: Gao, M., Zang, S., Zhu, Y., Mao, C., Zhang, Y., Ma, X.
PDB entry 8z8a: Cryo-EM structure of the Lactate-bound human HCAR1-Gi1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2024-04-21
Authors: Gao, M., Zang, S., Zhu, Y., Mao, C., Zhang, Y., Ma, X.
PDB entry 8z8b: Cryo-EM structure of human HCAR1-Gi complex without ligand (apo state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-04-21
Authors: Gao, M., Zang, S., Zhu, Y., Mao, C., Zhang, Y., Ma, X.
PDB entry 8z8f: SFX structure of CraCRY 200 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-04-22
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z8j: Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 2
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-04-22
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z8k: SFX structure of CraCRY 233 ms after photoexcitation of the oxidized protein
Classification: FLAVOPROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-22
Authors: Maestre-Reyna, M., Hosokawa, Y., Wang, P.-H., Saft, M., Caramello, N., Engilberge, S., Franz-Badur, S., Ngura Putu, E.P.G., Nakamura, M., Wu, W.-J., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Yang, C.-H., Lin, W.-T., Yang, K.-C., Ban, Y., Imura, T., Kazuoka, A., Tanida, E., Owada, S., Joti, Y., Tanaka, R., Tanaka, T., Luo, F., Tono, K., Kiontke, S., Korf, L., Umena, Y., Tosha, T., Bessho, Y., Nango, E., Iwata, S., Royant, A., Tsai, M.-D., Yamamoto, J., Essen, L.-O.
PDB entry 8z8l: structure of IL-4Ra in complex with an nanobody 4E9
Classification: CYTOKINE
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.96 Å
Deposited: 2024-04-22
Authors: Song, G., Qiu, W.
PDB entry 8z8m: Crystal structure of human TNF alpha in complex with TNF30(VHH) domain of ozoralizumab
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-04-22
Authors: Mima, M., Mishima-Tsumagari, C.
PDB entry 8z8n: Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 3
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2024-04-22
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z8o: norbelladine 4'-O-methyltransferase Y186F complexed with Mg and SAH
Classification: TRANSFERASE
Source organism: Narcissus pseudonarcissus MK-2014
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-04-22
Authors: Saw, Y.Y.H., Nakashima, Y., Morita, H.
PDB entry 8z8p: norbelladine 4'-O-methyltransferase S52M variant complexed with Mg and SAH
Classification: TRANSFERASE
Source organism: Narcissus pseudonarcissus MK-2014
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-04-22
Authors: Saw, Y.Y.H., Nakashima, Y., Morita, H.
PDB entry 8z8q: Crystal structure of 2'-dG riboswitch
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2024-04-22
Authors: Liao, W., Ren, Y., Huang, L.
PDB entry 8z8r: norbelladine 4'-O-methyltransferase S52T complexed with Mg and SAH
Classification: TRANSFERASE
Source organism: Narcissus pseudonarcissus MK-2014
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2024-04-22
Authors: Saw, Y.Y.H., Nakashima, Y., Morita, H.
PDB entry 8z8s: norbelladine 4'-O-methyltransferase S52M Y186F complexed with Mg and SAH
Classification: TRANSFERASE
Source organism: Narcissus pseudonarcissus MK-2014
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-04-22
Authors: Saw, Y.Y.H., Nakashima, Y., Morita, H.
PDB entry 8z8t: norbelladine 4'-O-methyltransferase S52T Y186F complexed with Mg and SAH
Classification: TRANSFERASE
Source organism: Narcissus pseudonarcissus MK-2014
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-04-22
Authors: Saw, Y.Y.H., Nakashima, Y., Morita, H.
PDB entry 8z8u: Crystal structure of LINE-1 ribozyme mutant - C39U
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2024-04-22
Authors: Ren, Y., Huang, L., Lin, X.
PDB entry 8z8v: Crystal structure of human serum albumin in complex with ALB8(VHH) domain of ozoralizumab
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-04-22
Authors: Mima, M., Mishima-Tsumagari, C.
PDB entry 8z8w: Crystal Structure of EphA6/Caskin1 complex
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-04-22
Authors: Li, J., Liu, W.
PDB entry 8z8x: Cryo-EM structure of Thogoto virus polymerase in a transcription initiation conformation
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-04-22
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z8y: Crystal structure of CrtAgo/CrtTIR-APAZ complex
Classification: DNA BINDING PROTEIN
Source organism: Thermoflavifilum thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2024-04-22
Authors: Hu, R., Chen, J., Liu, L.
PDB entry 8z8z: Cryo-EM structure of LYCHOS
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Deposited: 2024-04-22
Authors: Xiong, Q., Zhu, Z., Li, T., Zhou, Z., Chao, Y., Qu, Q., Li, D.
PDB entry 8z90: Cryo-EM structure of Thogoto virus polymerase in transcription initiation conformation 2
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-04-22
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z91: Soil metagenomic-derived esterase
Classification: HYDROLASE
Source organism: soil metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-04-22
Authors: Li, W.Q., Sun, S.W.
PDB entry 8z92: Crystal structure of CrtAgo/TIR-APAZ in complex with guide DNA and 16-nt target DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.85 Å
Deposited: 2024-04-22
Authors: Hu, R., Chen, J., Liu, L.
PDB entry 8z93: Cryo-EM structure of amyloid fibril formed by human RIPK1 RHIM protein
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.65 Å
Deposited: 2024-04-22
Authors: Ma, Y., Zhao, K., Liu, C.
PDB entry 8z94: Cryo-EM structure of RIPK1 RHIM PFFs cross seeded RIPK3 RHIM amyloid fibril
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.56 Å
Deposited: 2024-04-22
Authors: Ma, Y., Zhao, K., Liu, C.
PDB entry 8z95: Humanized anti-PEG h6.3 Fab in complex with PEG
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-04-22
Authors: Lin, Y.C., Chang, C.Y., Su, Y.C.
PDB entry 8z96: Crystal structure of CrtAgo/TIR-APAZ in complex with guide DNA and 21-nt target DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2024-04-22
Authors: Hu, R., Chen, J., Liu, L.
PDB entry 8z97: Cryo-EM structure of Thogoto virus polymerase in a transcription elongation conformation
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-04-22
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z98: Cryo-EM structure of Thogoto virus polymerase in a transcription reception conformation
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2024-04-22
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z99: Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state +I
Classification: ANTIVIRAL PROTEIN
Source organism: metagenome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-04-22
Authors: Zhang, H., Deng, Z., Li, X.
PDB entry 8z9a: Cryo-EM structure of the insect olfactory receptor OR5-Orco heterocomplex from Acyrthosiphon pisum bound with geranyl acetate
Classification: MEMBRANE PROTEIN
Source organism: Acyrthosiphon pisum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-23
Authors: Wang, Y.D., Qiu, L., Guan, Z.Y., Wang, Q., Wang, G.R., Yin, P.
PDB entry 8z9b: Low molecular weight antigen MTB12
Classification: IMMUNE SYSTEM
Source organism: Mycobacterium tuberculosis CDC1551
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2024-04-23
Authors: Park, H.H., Han, J.H.
PDB entry 8z9c: Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state I
Classification: ANTIVIRAL PROTEIN
Source organism: metagenome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-04-23
Authors: Zhang, H., Deng, Z., Li, X.
PDB entry 8z9d: cryo-EM structure of PSII-LHCII megacomplex from spinach
Classification: PHOTOSYNTHESIS
Source organism: Spinacia oleracea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-04-23
Authors: Shan, J.Y., Liu, Z.F.
PDB entry 8z9e: Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state II
Classification: ANTIVIRAL PROTEIN
Source organism: metagenome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-04-23
Authors: Zhang, H., Deng, Z., Li, X.
PDB entry 8z9f: Crystal structure of glyoxylate reductase from Acetobacter aceti in complex with NADH
Classification: OXIDOREDUCTASE
Source organism: Acetobacter aceti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-04-23
Authors: Majumder, T.R., Yoshizawa, T., Inoue, M., Aono, R., Matsumura, H., Mihara, H.
PDB entry 8z9g: Crystal structure of glyoxylate reductase from Acetobacter aceti in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Acetobacter aceti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-04-23
Authors: Majumder, T.R., Yoshizawa, T., Inoue, M., Aono, R., Matsumura, H., Mihara, H.
PDB entry 8z9h: Cryo-EM structure of Thogoto virus polymerase in a transcription elongation-reception conformation
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-04-23
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z9i: Crystal structure of RaTG13 RBD bound to Rhinolophus affinis ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Bat coronavirus RaTG13; Rhinolophus affinis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.011 Å
Deposited: 2024-04-23
Authors: Lan, J., Wang, C.H.
PDB entry 8z9k: Crystal structure of LINE-1 ribozyme
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.86 Å
Deposited: 2024-04-23
Authors: Ren, Y., Huang, L., Lin, X.
PDB entry 8z9l: Crystal structure of SARS-CoV-2 RBD bound to Rhinolophus affinis ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Rhinolophus affinis; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.598 Å
Deposited: 2024-04-23
Authors: Lan, J., Wang, C.H.
PDB entry 8z9m: Cryo-EM structure of dimeric WDR11-FAM91A1 complex
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-23
Authors: Jia, G.W., Deng, Q.H., Su, Z.M., Jia, D.
PDB entry 8z9o: Cryo-EM structure of human GPR4-Gs complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-04-23
Authors: Chen, L.N., Mao, C.Y., Cheng, S.Z., Liu, Y.F., Fu, Y.F., Ma, X.Y., Xu, P., Ji, S.Y., Wang, W.W., Shen, D.D., Zhang, H.B., Shen, Q.Y., Chai, R., Zhang, M., Yang, L., Han, F., Mao, C.Y., Cai, X.J., Zhang, Y.
PDB entry 8z9p: Cryo-EM structure of human GPR4-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-04-23
Authors: Chen, L.N., Zhou, H., Xi, K., Cheng, S.Z., Liu, Y.F., Fu, Y.F., Ma, X.Y., Xu, P., Ji, S.Y., Wang, W.W., Shen, D.D., Zhang, H.B., Shen, Q.Y., Chai, R., Zhang, M., Yang, L., Han, F., Mao, C.Y., Cai, X.J., Zhang, Y.
PDB entry 8z9q: Cryo-EM structure of Thogoto virus polymerase in a replication reception conformation
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2024-04-23
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z9r: Cryo-EM structure of Thogoto virus polymerase in a replication elongation-reception conformation
Classification: TRANSCRIPTION
Source organism: Thogoto virus (isolate SiAr 126); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-04-23
Authors: Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.
PDB entry 8z9s: Substrate-free structure of CYP105AW5 from deep-sea Streptomyces aculeolatus
Classification: OXIDOREDUCTASE
Source organism: Streptomyces aculeolatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-04-23
Authors: Gao, Q., Yang, J., Xu, L.H.
PDB entry 8z9u: Crystal structure of the Methermicoccus shengliensis ZC-1 2-methoxybenzoic acid methyltransferase (MtxA)
Classification: TRANSFERASE
Source organism: Methermicoccus shengliensis DSM 18856
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-04-23
Authors: Yang, Q., Wang, S.X., Bai, L.P.
PDB entry 8z9v: Amyloid beta and TTR
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.84 Å
Deposited: 2024-04-23
Authors: Lee, H.N., Han, C.W., Jang, S.B., Jeong, M.S.
PDB entry 8z9x: Cryo-EM structure of Phytanoyl-CoA-bound human very long-chain fatty acid ABC transporter ABCD3
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-04-23
Authors: Li, Y., Chen, Y.X., Zhou, C.Z., Hou, W.T.
PDB entry 8z9y: Cryo-EM Structure of the Arabidopsis thaliana TIC Complex
Classification: TRANSLOCASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-04-23
Authors: Wu, J., Yan, Z., Jin, Z., Xu, Q.
PDB entry 8z9z: Cryo-EM structure of the insect olfactory receptor OR5-Orco heterocomplex from Acyrthosiphon pisum
Classification: MEMBRANE PROTEIN
Source organism: Acyrthosiphon pisum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-04-24
Authors: Wang, Y.D., Qiu, L., Guan, Z.Y., Wang, Q., Wang, G.R., Yin, P.
PDB entry 8za0: Crystal structure of OR4K15 ribozyme
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-04-24
Authors: Ren, Y., Huang, L.
PDB entry 8za1: lbADH mutant E144R with NADP
Classification: OXIDOREDUCTASE
Source organism: Levilactobacillus brevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-04-24
Authors: Xu, W.H., Cen, Y.X., Wu, Q.
PDB entry 8za2: lbADH mutant L195S/V196L with NADP
Classification: OXIDOREDUCTASE
Source organism: Levilactobacillus brevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2024-04-24
Authors: Xu, W.H., Cen, Y.X., Wu, Q.
PDB entry 8za3: lbADH mutant A144F with NADP
Classification: OXIDOREDUCTASE
Source organism: Levilactobacillus brevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2024-04-24
Authors: Xu, W.H., Cen, Y.X., Wu, Q.
PDB entry 8za4: Crystal structure of OR4K15 ribozyme mutant - chainBDF C2U
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-04-24
Authors: Ren, Y., Huang, L.
PDB entry 8za5: Crystal structure of HsmR
Classification: TRANSCRIPTION
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-24
Authors: Park, S.Y.