LiteFold/PDB huggingface dataset:
PDB entry 5y3j: Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and TCGCAC DNA)
Classification: IMMUNE SYSTEM
Source organism: Equus caballus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2017-07-29
Authors: Ohto, U., Ishida, H., Shimizu, T.
PDB entry 5y3k: Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and GCGCAC DNA)
Classification: IMMUNE SYSTEM
Source organism: Equus caballus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-07-29
Authors: Ohto, U., Shimizu, T.
PDB entry 5y3l: Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and CCGCAC DNA)
Classification: IMMUNE SYSTEM
Source organism: Equus caballus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-07-29
Authors: Ohto, U., Shimizu, T.
PDB entry 5y3m: Crystal structure of bovine TLR9 in complex with two DNAs (CpG DNA and TCGTTT DNA)
Classification: IMMUNE SYSTEM
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-07-29
Authors: Ohto, U., Shimizu, T.
PDB entry 5y3n: Structure of TRAP1 complexed with DN401
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-07-29
Authors: Jeong, H., Park, H.K., Kang, S., Kang, B.H., Lee, C.
PDB entry 5y3o: Structure of TRAP1 complexed with DN320
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-07-29
Authors: Jeong, H., Park, H.K., Kang, S., Kang, B.H., Lee, C.
PDB entry 5y3q: Crystal structure of SARS coronavirus papain-like protease conjugated with beta-mercaptoethanol
Classification: HYDROLASE
Source organism: Human SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2017-07-29
Authors: Lin, M.H., Chou, C.Y.
PDB entry 5y3r: Cryo-EM structure of Human DNA-PK Holoenzyme
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2017-07-29
Authors: Yin, X., Liu, M., Tian, Y., Wang, J., Xu, Y.
PDB entry 5y3s: Crystal structure of human NLRP1 leucine rich repeat domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.451 Å
Deposited: 2017-07-30
Authors: Jin, T., Xiao, T.S.
PDB entry 5y3t: Crystal structure of hetero-trimeric core of LUBAC: HOIP double-UBA complexed with HOIL-1L UBL and SHARPIN UBL
Classification: LIGASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-07-31
Authors: Tokunaga, A., Fujita, H., Ariyoshi, M., Ohki, I., Tochio, H., Iwai, K., Shirakawa, M.
PDB entry 5y3u: NMR-Based Model of the 22 Amino Acid Peptide in Polysialyltransferase Domain (PSTD) of the Polysialyltransferase ST8Sia IV in the Presence of Polysialic Acid (PolySia)
Classification: TRANSFERASE
Experimental method: SOLUTION NMR
Deposited: 2017-07-31
Authors: Liao, S.M., Liu, X.H., Lu, B., Peng, L.X., Chen, D., Huang, R.B., Zhou, G.P.
PDB entry 5y3x: Crystal structure of endo-1,4-beta-xylanase from Caldicellulosiruptor owensensis
Classification: HYDROLASE
Source organism: Caldicellulosiruptor owensensis OL
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-07-31
Authors: Liu, X., Sun, L.C., Zhang, Y.B., Liu, T.F., Xin, F.J.
PDB entry 5y3z: Structure of the periplasmic domain of the MotB L119P mutant from Salmonella (crystal form 1)
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-07-31
Authors: Takao, M., Kojima, S., Sakuma, M., Homma, M., Imada, K.
PDB entry 5y40: Structure of the periplasmic domain of the MotB L119P mutant from Salmonella (crystal form 2)
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-07-31
Authors: Takao, M., Kojima, S., Sakuma, M., Homma, M., Imada, K.
PDB entry 5y41: Crystal Structure of LIGAND-BOUND NURR1-LBD
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2017-07-31
Authors: Sreekanth, R., Lescar, J., Yoon, H.S.
PDB entry 5y42: Native-crystal structure of three chain non-toxic type II ribosome inactivating protein purified from the seeds of Trichosanthes anguina
Classification: PLANT PROTEIN
Source organism: Trichosanthes anguina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-07-31
Authors: Chandran, T., Vijayan, M.
PDB entry 5y44: A novel moderator XD4 for bile acid receptor
Classification: TRANSCRIPTION/TRANSCRIPTION ACTIVATOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2017-08-01
Authors: Lu, Y., Li, Y.
PDB entry 5y45: Crystal structure of a collagen-like peptide with interruption sequence
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2017-08-01
Authors: Xu, T., Liu, J.
PDB entry 5y46: Crystal structure of a collagen-like peptide with interruption sequence
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2017-08-01
Authors: Xu, T., Liu, J.
PDB entry 5y48: Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with Pyrimidine-2,4-dione at 1.70 Angstrom resolution
Classification: HYDROLASE
Source organism: Momordica balsamina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-08-01
Authors: Singh, P.K., Pandey, S., Iqbal, N., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5y49: A moderator XD22 binding to bile acid receptor
Classification: TRANSCRIPTION/TRANSCRIPTION ACTIVATOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-08-02
Authors: Lu, Y., Li, Y.
PDB entry 5y4a: Cadmium directed assembly of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis.
Classification: TRANSFERASE
Source organism: Yersinia pseudotuberculosis serotype I (strain IP32953)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2017-08-02
Authors: Pavithra, G.C., Ramagopal, U.A.
PDB entry 5y4b: Solution structure of yeast Fra2
Classification: ELECTRON TRANSPORT
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: SOLUTION NMR
Deposited: 2017-08-03
Authors: Tang, Y.J., Chi, C.B., Zhang, J.H., Dai, Y.N., Abdalla, M., Chen, Y.X., Zhou, C.Z.
PDB entry 5y4c: Crystal structure of EfeO-like protein Algp7 in complex with a metal ion
Classification: STRUCTURAL PROTEIN
Source organism: Sphingomonas sp. A1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.701 Å
Deposited: 2017-08-03
Authors: Temtrirath, K., Maruyama, Y., Mikami, B., Murata, K., Hashimoto, W.
PDB entry 5y4d: Crystal Structure of AnkB Ankyrin Repeats in Complex with AnkR/AnkB Chimeric Autoinhibition Segment
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2017-08-03
Authors: Chen, K., Li, J., Wang, C., Wei, Z., Zhang, M.
PDB entry 5y4e: Crystal Structure of AnkB Ankyrin Repeats R8-14 in complex with autoinhibition segment AI-b
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.341 Å
Deposited: 2017-08-03
Authors: Chen, K., Li, J., Wang, C., Wei, Z., Zhang, M.
PDB entry 5y4f: Crystal Structure of AnkB Ankyrin Repeats R13-24 in complex with autoinhibition segment AI-c
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.953 Å
Deposited: 2017-08-03
Authors: Chen, K., Li, J., Wang, C., Wei, Z., Zhang, M.
PDB entry 5y4g: Apo Structure of AmbP3
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-08-03
Authors: Wong, C.P., Awakawa, T., Nakashima, Y.
PDB entry 5y4h: Human SIRT3 in complex with halistanol sulfate
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-08-03
Authors: Kudo, N., Ito, A., Yoshida, M.
PDB entry 5y4i: Crystal structure of glucose isomerase in complex with glycerol in one metal binding mode
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2017-08-03
Authors: Bae, J.E., Kim, I.J., Nam, K.H.
PDB entry 5y4j: Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2017-08-03
Authors: Bae, J.E., Kim, I.J., Nam, K.H.
PDB entry 5y4k: Crystal structure of DddY mutant Y260A
Classification: LYASE
Source organism: Acinetobacter bereziniae NIPH 3
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-08-03
Authors: Zhang, Y.Z., Li, C.Y.
PDB entry 5y4l: PRRSV nsp4
Classification: VIRAL PROTEIN
Source organism: Porcine reproductive and respiratory syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.198 Å
Deposited: 2017-08-04
Authors: Shi, Y.J., Gang, Y., Peng, G.Q.
PDB entry 5y4m: Discoidin domain of human CASPR2
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2017-08-04
Authors: Liu, H., Xu, F., Zhang, J., Liang, W.
PDB entry 5y4n: Crystal structure of aerobically purified and anaerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2017-08-04
Authors: Nishikawa, K., Mochida, S., Hiromoto, T., Shibata, N., Higuchi, Y.
PDB entry 5y4o: Cryo-EM structure of MscS channel, YnaI
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2017-08-04
Authors: Zhang, Y., Yu, J.
PDB entry 5y4p: Crystal structure of Trypanosoma cruzi spermidine synthase in complex with 5-methoxy-2-(5-methyl-4,5-dihydro-1H-imidazol-2-yl)phenol
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2017-08-04
Authors: Amano, Y., Tateishi, Y.
PDB entry 5y4q: Crystal structure of Trypanosoma cruzi spermidine synthase in complex with N-(4-methoxyphenyl)quinolin-4-amine
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2017-08-04
Authors: Amano, Y., Tateishi, Y.
PDB entry 5y4r: Structure of a methyltransferase complex
Classification: TRANSFERASE/PROTEIN  BINDING
Source organism: Pseudomonas aeruginosa str. PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.298 Å
Deposited: 2017-08-04
Authors: Yan, X., Xin, L., Tan, Y.J., Jin, S., Liang, Z.X., Gao, Y.G.
PDB entry 5y4s: Structure of a methyltransferase complex
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa str. PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.405 Å
Deposited: 2017-08-04
Authors: Yan, X., Xin, L., Tan, Y.J., Jin, S., Liang, Z.X., Gao, Y.G.
PDB entry 5y4t: Crystal structure of Trx domain of Grx3 from Saccharomyces cerevisiae
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2017-08-05
Authors: Chi, C.B., Tang, Y.J., Zhang, J.H., Dai, Y.N., Abdalla, M., Chen, Y.X., Zhou, C.Z.
PDB entry 5y4u: Crystal structure of Grx domain of Grx3 from Saccharomyces cerevisiae
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-08-05
Authors: Chi, C.B., Tang, Y.J., Zhang, J.H., Dai, Y.N., Abdalla, M., Chen, Y.X., Zhou, C.Z.
PDB entry 5y4z: Crystal structure of the Zika virus NS3 helicase complex with AMPPNP
Classification: HYDROLASE
Source organism: Zika virus (strain Mr 766)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2017-08-06
Authors: Li, L.
PDB entry 5y50: Crystal structure of eukaryotic MATE transporter AtDTX14
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-08-06
Authors: Miyauchi, H., Kusakizako, T., Nishizawa, T., Ishitani, R., Nureki, O.
PDB entry 5y51: Crystal structure of PytH_H230A
Classification: HYDROLASE
Source organism: Sphingobium faniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-08-06
Authors: Xu, D.Q., Ran, T.T., He, J., Wang, W.W.
PDB entry 5y52: Crystal Structure of Highly Active BTUO Mutant P287G Improved by Humidity Control at 83% RH
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. (strain TB-90)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2017-08-07
Authors: Itoh, T., Kishimoto, T., Nishiya, Y.
PDB entry 5y53: Crystal structure of AL2 PAL domain in complex with AtBMI1b binding site
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.598 Å
Deposited: 2017-08-07
Authors: Peng, L., Wang, L.L., Huang, Y.
PDB entry 5y56: Fc mutant (K392D/K409D/D399K)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.653 Å
Deposited: 2017-08-07
Authors: Ye, S., Xu, T., Yu, J., Wang, X., Xu, T., Jin, Q., Duan, J., Wu, J., Wu, H.
PDB entry 5y57: Crystal structure of a Novel Pyrethroid Hydrolase from Sphingobium faniae JZ-2
Classification: HYDROLASE
Source organism: Sphingobium faniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.961 Å
Deposited: 2017-08-07
Authors: Xu, D.Q., Ran, T.T., He, J., Wang, W.W.
PDB entry 5y58: Crystal structure of Ku70/80 and TLC1
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-08-08
Authors: Chen, H., Xue, J., Wu, J., Lei, M.
PDB entry 5y59: Crystal structure of Ku80 and Sir4
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.402 Å
Deposited: 2017-08-08
Authors: Chen, H., Xue, J., Wu, J., Lei, M.
PDB entry 5y5a: Crystal structure of Est1 and Cdc13
Classification: PROTEIN BINDING
Source organism: Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.206 Å
Deposited: 2017-08-08
Authors: Chen, H., Xue, J., Wu, J., Lei, M.
PDB entry 5y5b: Crystal Structure Of IMP-1 Metallo-beta-lactamase
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-08-08
Authors: Wachino, J.
PDB entry 5y5c: Crystal structure of dha bind to bovine beta-lactoglobulin
Classification: LIPID BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2017-08-08
Authors: Jiang, L., Liu, J.
PDB entry 5y5d: The crystal structure of VrEH2 mutant M263W
Classification: HYDROLASE
Source organism: Vigna radiata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-08-08
Authors: Xu, J.H., Yu, H.L., Zhou, J.H., Kong, X.D., Li, F.L.
PDB entry 5y5e: Crystal structure of phospholipase A2 with inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-08-08
Authors: Hou, S., Xu, J., Xu, T., Liu, J.
PDB entry 5y5f: Structure of cytochrome P450nor in NO-bound state: damaged by low-dose (0.72 MGy) X-ray
Classification: OXIDOREDUCTASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-08-09
Authors: Tosha, T., Nomura, T., Nishida, T., Ueno, G., Murakami, H., Yamashita, K., Hirata, K., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
PDB entry 5y5g: Structure of cytochrome P450nor in NO-bound state: damaged by high-dose (5.7 MGy) X-ray
Classification: OXIDOREDUCTASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2017-08-09
Authors: Tosha, T., Nomura, T., Nishida, T., Ueno, G., Murakami, H., Yamashita, K., Hirata, K., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
PDB entry 5y5h: SF-ROX structure of cytochrome P450nor (NO-bound state) determined at SACLA
Classification: OXIDOREDUCTASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-08-09
Authors: Tosha, T., Nomura, T., Nishida, T., Yamagiwa, R., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Yamashita, A., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
PDB entry 5y5i: Time-resolved SFX structure of cytochrome P450nor: 20 ms after photo-irradiation of caged NO in the presence of NADH (NO-bound state), light data
Classification: OXIDOREDUCTASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-08-09
Authors: Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
PDB entry 5y5j: Time-resolved SFX structure of cytochrome P450nor: dark-2 data in the presence of NADH (resting state)
Classification: OXIDOREDUCTASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-08-09
Authors: Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
PDB entry 5y5k: Time-resolved SFX structure of cytochrome P450nor : 20 ms after photo-irradiation of caged NO in the absence of NADH (NO-bound state), light data
Classification: OXIDOREDUCTASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-08-09
Authors: Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
PDB entry 5y5l: Time-resolved SFX structure of cytochrome P450nor: dark-2 data in the absence of NADH (resting state)
Classification: OXIDOREDUCTASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-08-09
Authors: Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
PDB entry 5y5m: SFX structure of cytochrome P450nor: a complete dark data without pump laser (resting state)
Classification: OXIDOREDUCTASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-08-09
Authors: Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
PDB entry 5y5n: Crystal structure of human Sirtuin 2 in complex with a selective inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-08-09
Authors: Mellini, P., Itoh, Y., Tsumoto, H., Li, Y., Suzuki, M., Tokuda, N., Kakizawa, T., Miura, Y., Takeuchi, J., Lahtela-Kakkonen, M., Suzuki, T.
PDB entry 5y5o: Crystal structure of the dUTPase of white spot syndrome virus in the apo state
Classification: VIRAL PROTEIN
Source organism: White spot syndrome virus (isolate Shrimp/China/Tongan/1996)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-08-09
Authors: Ma, Q., Zang, K.
PDB entry 5y5p: Crystal structure of the dUTPase of white spot syndrome virus in complex with dU,PPi and Mg2+
Classification: VIRAL PROTEIN
Source organism: White spot syndrome virus (isolate Shrimp/China/Tongan/1996)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2017-08-09
Authors: Ma, Q., Zang, K.
PDB entry 5y5q: Crystal structure of the WSSV dUTPase D88N/R158E mutant in complex with dUTP
Classification: VIRAL PROTEIN
Source organism: White spot syndrome virus (isolate Shrimp/China/Tongan/1996)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2017-08-09
Authors: Ma, Q., Zang, K.
PDB entry 5y5r: Crystal structure of a novel Pyrethroid Hydrolase PytH with BIF
Classification: HYDROLASE
Source organism: Sphingobium faniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.899 Å
Deposited: 2017-08-09
Authors: Xu, D.Q., Ran, T.T., Wang, W.W.
PDB entry 5y5s: Structure of photosynthetic LH1-RC super-complex at 1.9 angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-08-09
Authors: Yu, L.-J., Suga, M., Wang-Otomo, Z.-Y., Shen, J.-R.
PDB entry 5y5t: Crystal structures of spleen tyrosine kinase in complex with a novel inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-08-09
Authors: Lee, S.J., Lee, B.I.
PDB entry 5y5u: Crystal structures of spleen tyrosine kinase in complex with a novel inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2017-08-09
Authors: Lee, S.J., Lee, B.I.
PDB entry 5y5v: Crystal structure of a novel Pyrethroid Hydrolase PytH (S78A)
Classification: HYDROLASE
Source organism: Sphingobium faniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2017-08-09
Authors: Xu, D.Q., Ran, T.T., He, J., Wang, W.W.
PDB entry 5y5w: Crystal structure of human Spindlin1 in complex with a histone H4K20(me3) peptide
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2017-08-10
Authors: Wang, C., Zang, J.
PDB entry 5y5x: V/A-type ATPase/synthase from Thermus thermophilus, rotational state 1
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2017-08-10
Authors: Nakanishi, A., Kishikawa, J., Tamakoshi, M., Mitsuoka, K., Yokoyama, K.
PDB entry 5y5y: V/A-type ATPase/synthase from Thermus thermophilus, peripheral domain, rotational state 1
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2017-08-10
Authors: Nakanishi, A., Kishikawa, J., Tamakoshi, M., Mitsuoka, K., Yokoyama, K.
PDB entry 5y5z: V/A-type ATPase/synthase from Thermus thermophilus, rotational state 2
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.7 Å
Deposited: 2017-08-10
Authors: Nakanishi, A., Kishikawa, J., Tamakoshi, M., Mitsuoka, K., Yokoyama, K.
PDB entry 5y60: V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3.
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.5 Å
Deposited: 2017-08-10
Authors: Nakanishi, A., Kishikawa, J., Tamakoshi, M., Mitsuoka, K., Yokoyama, K.
PDB entry 5y61: YfiB-YfiR complexed with GMP
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2017-08-10
Authors: Zhou, L., Xu, M., Jiang, T.
PDB entry 5y62: YfiR complexed with GMP
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-08-10
Authors: Zhou, L., Xu, M., Jiang, T.
PDB entry 5y63: Crystal structure of Enterococcus faecalis AhpC
Classification: OXIDOREDUCTASE
Source organism: Enterococcus faecalis (strain ATCC 700802 / V583)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2017-08-10
Authors: Pan, A., Balakrishna, A.M., Grueber, G.
PDB entry 5y64: Phosphoglycerate mutase 1 H11 phosphorylated form complexed with KH1
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.149 Å
Deposited: 2017-08-10
Authors: Zhou, L., Jiang, L.L.
PDB entry 5y65: Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH2
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.554 Å
Deposited: 2017-08-10
Authors: Jiang, L.L., Zhou, L.
PDB entry 5y66: Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN and Ro61-8048
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2017-08-10
Authors: Xiang, Y., Gao, J.J., Zhu, D.Y.
PDB entry 5y69: Crystal structure of the L52M mutant of AcrIIA1
Classification: VIRAL PROTEIN
Source organism: Listeria monocytogenes J0161
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-08-11
Authors: Ka, D., An, S.Y., Suh, J.Y., Bae, E.
PDB entry 5y6a: Crystal structure of the anti-CRISPR protein, AcrIIA1
Classification: VIRAL PROTEIN
Source organism: Listeria monocytogenes J0161
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-08-11
Authors: Ka, D., An, S.Y., Suh, J.Y., Bae, E.
PDB entry 5y6b: Crystal structure of ZmASCH Y47F mutant protein from Zymomonas mobilis
Classification: RNA BINDING PROTEIN
Source organism: Zymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-08-11
Authors: Park, S.-Y., Kim, J.-S.
PDB entry 5y6c: Crystal structure of ZmASCH S128A mutant protein from Zymomonas mobilis
Classification: RNA BINDING PROTEIN
Source organism: Zymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.398 Å
Deposited: 2017-08-11
Authors: Park, S.-Y., Kim, J.-S.
PDB entry 5y6d: VIM-2 metallo-beta-lactamase in complex with (R)-2-(4-fluorophenyl)-2-((S)-3-mercapto-2-methylpropanamido)acetic acid (compound 11)
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-08-11
Authors: Li, G.-B.
PDB entry 5y6e: VIM-2 metallo-beta-lactamase in complex with (R)-2-(4-hydroxyphenyl)-2-((S)-3-mercapto-2-methylpropanamido)acetic acid (compound 12)
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-08-11
Authors: Li, G.-B.
PDB entry 5y6f: Crystal structure of YcgR in complex with c-di-GMP from Escherichia coli
Classification: PROTEIN BINDING
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-08-11
Authors: Hou, Y.J., Wang, D.C., Li, D.F.
PDB entry 5y6g: PilZ domain with c-di-GMP of YcgR from Escherichia coli
Classification: PROTEIN BINDING
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-08-11
Authors: Hou, Y.J., Wang, D.C., Li, D.F.
PDB entry 5y6h: Crystal structure of YcgR-N domain of YcgR from Escherichia coli
Classification: UNKNOWN FUNCTION
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.774 Å
Deposited: 2017-08-11
Authors: Hou, Y.J., Yang, W.S., Wang, D.C., Li, D.F.
PDB entry 5y6i: Crystal structure of Pseudomonas aeruginosa HmgR
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.517 Å
Deposited: 2017-08-11
Authors: Gu, T., Ji, Q., Liang, H.
PDB entry 5y6j: Structure of Tomato spotted wilt virus nucleocapsid protein with alternative oligomerization state
Classification: VIRAL PROTEIN
Source organism: Tomato spotted wilt virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.811 Å
Deposited: 2017-08-12
Authors: Guo, Y., Dong, S., Lou, Z.
PDB entry 5y6k: Human serum trnasferrin bound to a fluorescent probe
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2017-08-12
Authors: Jiang, N., Cheng, T., Wang, M., Chan, G.C.F., Jin, L., Li, H., Sun, H.
PDB entry 5y6l: A subcomplex crystal structure of human cytosolic aspartyl-tRNA synthetase and heterotetrameric glutathione transferase-homology domains in multi-tRNA synthetase complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-08-12
Authors: Cho, H.Y., Lee, H.J., Kang, B.S.
PDB entry 5y6m: Zika virus helicase in complex with ADP-AlF3
Classification: HYDROLASE
Source organism: Zika virus (strain Mr 766)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2017-08-12
Authors: Yang, X.Y., Chen, C., Tian, H.L., Chi, H., Mu, Z.Y., Zhang, T.Q., Yang, K.L., Zhao, Q., Liu, X.H., Wang, Z.F., Ji, X.Y., Yang, H.T.
PDB entry 5y6n: Zika virus helicase in complex with ADP
Classification: HYDROLASE
Source organism: Zika virus (strain Mr 766)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.571 Å
Deposited: 2017-08-12
Authors: Yang, X.Y., Chen, C., Tian, H.L., Chi, H., Mu, Z.Y., Zhang, T.Q., Yang, K.L., Zhao, Q., Liu, X.H., Wang, Z.F., Ji, X.Y., Yang, H.T.
PDB entry 5y6o: Crystal structure of DAXX N-terminal four-helix bundle domain (4HB) in complex with ATRX
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2017-08-13
Authors: Huang, H., Patel, D.J.
PDB entry 5y6p: Structure of the phycobilisome from the red alga Griffithsia pacifica
Classification: PHOTOSYNTHESIS
Source organism: Griffithsia pacifica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2017-08-13
Authors: Zhang, J., Ma, J.F., Liu, D.S., Sun, S., Sui, S.F.
PDB entry 5y6q: Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400
Classification: OXIDOREDUCTASE
Source organism: Methylobacillus sp. KY4400
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-08-13
Authors: Mikami, B., Uchida, H.
PDB entry 5y6r: Crystal structure of CSFV NS5B
Classification: TRANSFERASE
Source organism: Classical swine fever virus strain Eystrup
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2017-08-13
Authors: Li, W., Wu, B.
PDB entry 5y6t: Crystal structure of endo-1,4-beta-mannanase from Eisenia fetida
Classification: CARBOHYDRATE
Source organism: Eisenia fetida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-08-15
Authors: Hirano, Y., Ueda, M., Tamada, T.
PDB entry 5y6u: Crystal structure of wild-type YabJ protein from Bacillus subtilis (natto).
Classification: UNKNOWN FUNCTION
Source organism: Bacillus subtilis subsp. natto (strain BEST195)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-08-15
Authors: Fujimoto, Z., Kishine, N., Kimura, K.
PDB entry 5y6y: The crystal structure of VrEH2 mutant M263N
Classification: HYDROLASE
Source organism: Vigna radiata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-08-15
Authors: Li, F.L., Yu, H.L., Chen, Q., Kong, X.D., Zhou, J.H., Xu, J.H.
PDB entry 5y6z: Crystal structure of the coxsackievirus A16 polymerase elongation complex
Classification: TRANSFERASE/RNA
Source organism: Coxsackievirus A16; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-08-15
Authors: Bi, P., Shu, B., Gong, P.
PDB entry 5y70: NMR structure of KMP11 in DPC micelle
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: SOLUTION NMR
Deposited: 2017-08-16
Authors: Lu, Y., Lim, L.Z., Song, J.
PDB entry 5y72: DMSPP Bound AmbP3
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2017-08-16
Authors: Wong, C.P., Awakawa, T., Nakashima, Y.
PDB entry 5y77: Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN (seMet derivative)
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-08-16
Authors: Xiang, Y., Gao, J.J., Zhu, D.Y.
PDB entry 5y78: Crystal structure of the triose-phosphate/phosphate translocator in complex with inorganic phosphate
Classification: TRANSPORT PROTEIN
Source organism: Galdieria sulphuraria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-08-16
Authors: Lee, Y., Nishizawa, T., Takemoto, M., Kumazaki, K., Yamashita, K., Hirata, K., Minoda, A., Nagatoishi, S., Tsumoto, K., Ishitani, R., Nureki, O.
PDB entry 5y79: Crystal structure of the triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate
Classification: TRANSPORT PROTEIN
Source organism: Galdieria sulphuraria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-08-16
Authors: Lee, Y., Nishizawa, T., Takemoto, M., Kumazaki, K., Yamashita, K., Hirata, K., Minoda, A., Nagatoishi, S., Tsumoto, K., Ishitani, R., Nureki, O.
PDB entry 5y7a: Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.846 Å
Deposited: 2017-08-16
Authors: Xiang, Y., Gao, J.J., Zhu, D.Y.
PDB entry 5y7c: Hapalindole A and DMSPP Bound AmbP3
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 2.003 Å
Deposited: 2017-08-16
Authors: Wong, C.P., Awakawa, T., Nakashima, Y.
PDB entry 5y7d: Crystal structure of human Endothelial-overexpressed LPS associated factor 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2017-08-17
Authors: Park, S.H., Kim, M.J., Park, J.S., Kim, H.J., Han, B.W.
PDB entry 5y7f: Crystal structure of catalytic domain of UGGT (UDP-bound form) from Thermomyces dupontii
Classification: TRANSFERASE
Source organism: Thermomyces dupontii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2017-08-17
Authors: Satoh, T., Song, C., Zhu, T., Toshimori, T., Murata, K., Hayashi, Y., Kamikubo, H., Uchihashi, T., Kato, K.
PDB entry 5y7g: Crystal structure of paFAN1 bound to 1nt 5'flap DNA with gap
Classification: HYDROLASE/DNA
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2017-08-17
Authors: Cho, Y., Jin, H.
PDB entry 5y7h: Crystal structure of human DPP4 in complex with inhibitor3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-08-17
Authors: Lee, H.K., Kim, E.E.
PDB entry 5y7i: Structure of tilapia fish CLIC2
Classification: TRANSPORT PROTEIN
Source organism: Oreochromis mossambicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-08-17
Authors: Swaminathan, K., Zeng, J.
PDB entry 5y7j: Crystal structure of human DPP4 in complex with inhibitor2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.521 Å
Deposited: 2017-08-17
Authors: Lee, H.K., Kim, E.E.
PDB entry 5y7k: Crystal structure of human DPP4 in complex with inhibitor1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.512 Å
Deposited: 2017-08-17
Authors: Lee, H.K., Kim, E.E.
PDB entry 5y7l: Solution structure of Hbeta4 extracellular loop of BK potassium channel
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-08-17
Authors: Wang, Y., Lan, W., Ding, J., Cao, C.
PDB entry 5y7m: Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix
Classification: RNA BINDING PROTEIN
Source organism: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2017-08-01
Authors: Oshima, K., Kimura, M.
PDB entry 5y7n: Crystal structure of AKR1B10 in complex with NADP+ and Androst-4-ene-3-beta-6-alpha-diol
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-08-17
Authors: Hong, Z., Liping, Z., Cuiyun, L., Wei, Z.
PDB entry 5y7o: Crystal structure of folding sensor region of UGGT from Thermomyces dupontii
Classification: TRANSFERASE
Source organism: Thermomyces dupontii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2017-08-17
Authors: Satoh, T., Song, C., Zhu, T., Toshimori, T., Murata, K., Hayashi, Y., Kamikubo, H., Uchihashi, T., Kato, K.
PDB entry 5y7p: Bile salt hydrolase from lactobacillus salivarius complex with glycocholic acid and cholic acid
Classification: HYDROLASE
Source organism: Lactobacillus salivarius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-08-17
Authors: Hu, X.-J.
PDB entry 5y7q: Crystal structure of paFAN1 bound to 2nt 5'flap DNA with gap
Classification: HYDROLASE/DNA
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-08-17
Authors: Jin, H., Cho, Y.
PDB entry 5y7r: Quaternary complex of AsqJ-Fe3+-2OG-cyclopeptin
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2017-08-17
Authors: Liao, H.J., Lin, T.S.
PDB entry 5y7t: Quaternary complex of AsqJ-Fe3+-2OG-D-cyclopeptin
Classification: OXIDOREDUCTASE
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2017-08-18
Authors: Liao, H.J.
PDB entry 5y7w: Crystal structure of the Nco-A1 PAS-B domain with YL-2
Classification: TRANSCRIPTION/INIHIBITOR
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2017-08-18
Authors: Lee, Y.J., Yoon, H.S., Lee, J.H., Bae, J.H., Song, J.Y., Lim, H.S.
PDB entry 5y7x: Human Peroxisome proliferator-activated receptor (PPAR) delta in complexed with a potent and selective agonist
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.699 Å
Deposited: 2017-08-18
Authors: Kim, H.L., Chin, J.W., Cho, S.J., Song, J.Y., Yoon, H.S., Bae, J.H.
PDB entry 5y7y: Crystal structure of AhRR/ARNT complex
Classification: TRANSCRIPTION
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-08-18
Authors: Sakurai, S., Shimizu, T., Ohto, U.
PDB entry 5y7z: Complex structure of cyclin G-associated kinase with gefitinib
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.804 Å
Deposited: 2017-08-18
Authors: Ohbayashi, N., Murayama, K., Kato-Murayama, M., Shirouzu, M.
PDB entry 5y80: Complex structure of cyclin G-associated kinase with gefitinib
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-08-18
Authors: Ohbayashi, N., Murayama, K., Kato-Murayama, M., Shirouzu, M.
PDB entry 5y81: NuA4 TEEAA sub-complex
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2017-08-18
Authors: Wang, X., Cai, G.
PDB entry 5y82: Crystal structure of the periplasmic domain of the Thermotoga maritima YidC
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.517 Å
Deposited: 2017-08-18
Authors: Huang, Y., Xin, Y.
PDB entry 5y83: Crystal structure of YidC from Thermotoga maritima
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.842 Å
Deposited: 2017-08-18
Authors: Huang, Y., Xin, Y.
PDB entry 5y84: Hapalindole U and DMSPP Bound AmbP3
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-08-18
Authors: Wong, C.P., Awakawa, T., Nakashima, Y.
PDB entry 5y85: Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2017-08-18
Authors: Zheng, L., Micura, R.L., Ren, A.
PDB entry 5y86: Crystal structure of kinase
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-08-18
Authors: Kim, K.L., Cha, J.S., Cho, Y.S., Kim, H.Y., Chang, N.P., Cho, H.S.
PDB entry 5y87: Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.132 Å
Deposited: 2017-08-19
Authors: Zheng, L., Micura, R.L., Ren, A.
PDB entry 5y88: Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom
Classification: SPLICING
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2017-08-20
Authors: Wan, R., Yan, C., Bai, R., Lei, J., Shi, Y.
PDB entry 5y89: Periplasmic heme-binding protein BhuT in complex with one heme (holo-1)
Classification: TRANSPORT PROTEIN
Source organism: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-08-20
Authors: Naoe, Y., Nakamura, N., Rahman, M.M., Shiro, Y., Sugimoto, H.
PDB entry 5y8a: Periplasmic heme-binding protein BhuT in complex with two hemes (holo-2 form)
Classification: TRANSPORT PROTEIN
Source organism: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2017-08-20
Authors: Nakamura, N., Naoe, Y., Rahman, M.M., Shiro, Y., Sugimoto, H.
PDB entry 5y8b: Periplasmic heme-binding protein RhuT from Roseiflexus sp. RS-1 in apo form
Classification: TRANSPORT PROTEIN
Source organism: Roseiflexus sp. (strain RS-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-08-20
Authors: Rahman, M.M., Naoe, Y., Nakamura, N., Doi, A., Shiro, Y., Sugimoto, H.
PDB entry 5y8c: Crystal Structure Analysis of the BRD4
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2017-08-21
Authors: Xu, Y., Zhang, Y., Song, M., Wang, C.
PDB entry 5y8e: Crystal Structure of a prokaryotic SEFIR domain
Classification: SIGNALING PROTEIN
Source organism: Bacillus cereus F65185
Experimental method: X-RAY DIFFRACTION
Resolution: 1.804 Å
Deposited: 2017-08-21
Authors: Zhang, R., Ye, S., Zhu, Y., Yang, H.
PDB entry 5y8f: Crystal Structure of a prokaryotic SEFIR domain
Classification: SIGNALING PROTEIN
Source organism: Bacillus cereus F65185
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-08-21
Authors: Zhang, R., Ye, S., Zhu, Y., Yang, H.
PDB entry 5y8g: Mycobacterium tuberculosis 3-Hydroxyisobutyrate Dehydrogenase (MtHIBADH)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2017-08-21
Authors: Srikalaivani, R., Singh, A., Surolia, A., Vijayan, M.
PDB entry 5y8h: Mycobacterium tuberculosis 3-Hydroxyisobutyrate dehydrogenase (MtHIBADH) + NAD+
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-08-21
Authors: Srikalaivani, R., Singh, A., Surolia, A., Vijayan, M.
PDB entry 5y8i: Mycobacterium tuberculosis 3-Hydroxyisobutyrate dehydrogenase (MtHIBADH) + (S)-3-hydroxyisobutyrate (S-HIBA)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2017-08-21
Authors: Srikalaivani, R., Singh, A., Surolia, A., Vijayan, M.
PDB entry 5y8j: Mycobacterium tuberculosis 3-Hydroxyisobutyrate dehydrogenase (MtHIBADH) + (R)-3-hydroxyisobutyrate (R-HIBA)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2017-08-21
Authors: Srikalaivani, R., Singh, A., Surolia, A., Vijayan, M.
PDB entry 5y8k: Mycobacterium tuberculosis 3-Hydroxyisobutyrate dehydrogenase (MtHIBADH) + L-serine
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2017-08-21
Authors: Srikalaivani, R., Singh, A., Surolia, A., Vijayan, M.
PDB entry 5y8l: Mycobacterium tuberculosis 3-Hydroxyisobutyrate dehydrogenase (MtHIBADH) + NAD +(S)-3-hydroxyisobutyrate (S-HIBA)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-08-21
Authors: Srikalaivani, R., Singh, A., Surolia, A., Vijayan, M.
PDB entry 5y8m: Mycobacterium tuberculosis 3-Hydroxyisobutyrate dehydrogenase (MtHIBADH) + NAD + (R)-3-hydroxyisobutyrate (R-HIBA)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2017-08-21
Authors: Srikalaivani, R., Singh, A., Surolia, A., Vijayan, M.