LiteFold/PDB huggingface dataset:
PDB entry 9qu7: Cryo-EM structure of Oceanobacillus iheyensis group II intron domains D1-D5
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-04-10
Authors: Jadhav, S.S., Maiorca, M., Mulvaney, T., Topf, M., Marcia, M.
PDB entry 9qu8: apPol-DNA-nucleotide complex (ternary2)
Classification: REPLICATION
Source organism: Plasmodium falciparum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-04-10
Authors: Lahiri, I., Kumari, A.
PDB entry 9qu9: Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (C2-symmetry)
Classification: PLANT PROTEIN
Source organism: Albugo candida; Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-04-10
Authors: Zhao, H., Lukoyanova, N., Selvaraj, M., Jones, J.
PDB entry 9qua: apPol-DNA-nucleotide complex (ternary 1)
Classification: REPLICATION
Source organism: Plasmodium falciparum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-04-10
Authors: Lahiri, I., Kumari, A.
PDB entry 9qub: Cryo-EM structure of the human NHA2-Fab complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-04-10
Authors: Jung, S., Drew, D.
PDB entry 9quc: Metal-free de novo protein scaffold TFD-EH
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-10
Authors: Wagner Egea, P., Delhommel, F., Mustafa, G., Leiss-Maier, F., Klimper, L., Badmann, T., Heider, A., Wille, I.C., Groll, M., Sattler, M., Zeymer, C.
PDB entry 9qud: Cu(II)-bound de novo protein scaffold TFD-EH
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-10
Authors: Wagner Egea, P., Delhommel, F., Mustafa, G., Leiss-Maier, F., Klimper, L., Badmann, T., Heider, A., Wille, I.C., Groll, M., Sattler, M., Zeymer, C.
PDB entry 9que: Structure of human MTH1 in complex with 8DG by continuous serial electron diffraction (SerialED)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.66 Å
Deposited: 2025-04-10
Authors: Hofer, G., Wang, L., Pacoste, L., Hager, P., Fonjallaz, A., Scaletti Hutchinson, E., Stenmark, P., Di Palma, M., Williams, L., Worral, J., Steiner, R., Xu, H., Zou, X.
PDB entry 9quf: Structure of a fungal Ube2O
Classification: LIGASE
Source organism: Pyrenophora tritici-repentis
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-04-10
Authors: Kordic, D., Williams, T.L., Luiza Deszcz, L., Ehrmann, J., Arnese, R., Meinhart, A., Clausen, T.
PDB entry 9qug: Structure of a UBC-Ubiquitin conjugate
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-04-10
Authors: Kordic, D., Williams, T.L., Luiza Deszcz, L., Ehrmann, J., Arnese, R., Meinhart, A., Clausen, T.
PDB entry 9quh: Structure of human MTH1 in complex with 8DG by MicroED using high electron fluence
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.32 Å
Deposited: 2025-04-10
Authors: Hofer, G., Wang, L., Pacoste, L., Hager, P., Fonjallaz, A., Scaletti Hutchinson, E., Stenmark, P., Di Palma, M., Williams, L., Worral, J., Steiner, R., Xu, H., Zou, X.
PDB entry 9qui: Ni(II)-bound de novo protein scaffold TFD-EH
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-04-10
Authors: Wagner Egea, P., Delhommel, F., Mustafa, G., Leiss-Maier, F., Klimper, L., Badmann, T., Heider, A., Wille, I.C., Groll, M., Sattler, M., Zeymer, C.
PDB entry 9quj: apPol-DNA complex (binary 1)
Classification: REPLICATION
Source organism: Plasmodium falciparum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-04-10
Authors: Lahiri, I., Kumari, A.
PDB entry 9quk: Structure of human MTH1 in complex with 8DG by MicroED using low electron fluence
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.86 Å
Deposited: 2025-04-10
Authors: Hofer, G., Wang, L., Pacoste, L., Hager, P., Fonjallaz, A., Scaletti Hutchinson, E., Stenmark, P., Di Palma, M., Williams, L., Worral, J., Steiner, R., Xu, H., Zou, X.
PDB entry 9qul: Zn(II)-bound de novo protein scaffold TFD-EH T87E
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-10
Authors: Wagner Egea, P., Delhommel, F., Mustafa, G., Leiss-Maier, F., Klimper, L., Badmann, T., Heider, A., Wille, I.C., Groll, M., Sattler, M., Zeymer, C.
PDB entry 9qum: Structure of lysozyme by continuous serial electron diffraction (SerialED)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 0.83 Å
Deposited: 2025-04-10
Authors: Hofer, G., Wang, L., Pacoste, L., Hager, P., Fonjallaz, A., Scaletti Hutchinson, E., Stenmark, P., Di Palma, M., Williams, L., Worral, J., Steiner, R., Xu, H., Zou, X.
PDB entry 9qun: apPol-nucleotide complex
Classification: REPLICATION
Source organism: Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-04-10
Authors: Lahiri, I., Kumari, A.
PDB entry 9quo: Co(II)-bound de novo protein scaffold TFD-EH T87E
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-10
Authors: Wagner Egea, P., Delhommel, F., Mustafa, G., Leiss-Maier, F., Klimper, L., Badmann, T., Heider, A., Wille, I.C., Groll, M., Sattler, M., Zeymer, C.
PDB entry 9qup: Tb(III)-bound de novo protein scaffold TFD-EE MPNN
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-10
Authors: Wagner Egea, P., Delhommel, F., Mustafa, G., Leiss-Maier, F., Klimper, L., Badmann, T., Heider, A., Wille, I.C., Groll, M., Sattler, M., Zeymer, C.
PDB entry 9quq: cryo-EM structure of TolQR conformation2 in SMA nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-04-11
Authors: Luo, Y., Shen, C.
PDB entry 9qur: Crystal structure of gamma-Glutamyl-Methylamide Synthetase from Methylovorus mays (MmGmaS) in complex with ATPgS
Classification: LIGASE
Source organism: Methylovorus mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-04-11
Authors: Vascon, F., Loprete, G., Bergantino, E., Cendron, L.
PDB entry 9qus: Triosephosphate isomerase of Rhodonellum psychrophilum
Classification: ISOMERASE
Source organism: Rhodonellum psychrophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-04-11
Authors: Nowak, J.S., Olesen, S., Baerentsen, R.
PDB entry 9quu: Triosephosphate isomerase of Rhodococcus sp. JG-3
Classification: ISOMERASE
Source organism: Rhodococcus sp. JG-3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-04-11
Authors: Nowak, J.S., Olesen, S., Baerentsen, R.
PDB entry 9quw: Cryo-EM structure of the human NHA2-Fab complex bound to phloretin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-04-11
Authors: Jung, S., Drew, D.
PDB entry 9qux: Solution structure of the Homer1 EVH1 domain
Classification: PEPTIDE BINDING PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2025-04-11
Authors: Czajlik, A., Maruzs, B., Fanni, F., Batta, G., Gaspari, Z., Peterfia, B.F.
PDB entry 9quz: Crystal structure of CtaG from Ruminiclostridium cellulolyticum (P2(1)-small)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qv0: 1-Phosphofructokinase (FruK) from E. coli with bound fructose 1-phosphate and ADP
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-04-11
Authors: Zarzycki, J., Dronsella, B., Erb, T.J., Lindner, S.N.
PDB entry 9qv1: 1-Phosphofructokinase mutant K95H from E. coli with bound fructose 1-phosphate and ADP
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-04-11
Authors: Zarzycki, J., Dronsella, B., Erb, T.J., Lindner, S.N.
PDB entry 9qv2: 1-Phosphofructokinase mutant K95H from E. coli with bound fructose 6-phosphate and ADP
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-04-11
Authors: Zarzycki, J., Dronsella, B., Erb, T.J., Lindner, S.N.
PDB entry 9qv3: 1-Phosphofructokinase mutant K95T/G110S from E. coli with bound fructose 1-phosphate and ADP
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-04-11
Authors: Zarzycki, J., Dronsella, B., Erb, T.J., Lindner, S.N.
PDB entry 9qv4: 1-Phosphofructokinase mutant K95T/G110S from E. coli with bound fructose-1,6-bisphosphate and ADP
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-04-11
Authors: Zarzycki, J., Dronsella, B., Erb, T.J., Lindner, S.N.
PDB entry 9qv5: Asgard Archaeal HHoB nucleosome in the closed conformation
Classification: DNA BINDING PROTEIN
Source organism: Candidatus Heimdallarchaeota archaeon LC_3; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-04-11
Authors: Ranawat, H.M., Dodonova, S.O.
PDB entry 9qv6: Asgard HHoB hypernucleosome in the closed state
Classification: DNA BINDING PROTEIN
Source organism: Candidatus Heimdallarchaeota archaeon LC_3; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-04-11
Authors: Ranawat, H.M., Dodonova, S.O.
PDB entry 9qv7: Asgard HHoB nucleosome in the open state
Classification: DNA BINDING PROTEIN
Source organism: Candidatus Heimdallarchaeota archaeon LC_3; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-04-11
Authors: Ranawat, H.M., Dodonova, S.O.
PDB entry 9qv9: apPol-DNA-nucleotide complex (ternary 3)
Classification: REPLICATION
Source organism: Plasmodium falciparum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-04-11
Authors: Lahiri, I., Kumari, A.
PDB entry 9qvb: Structure of Eimeria tenella SAG13 (ETH_00013178)
Classification: UNKNOWN FUNCTION
Source organism: Eimeria tenella strain Houghton
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-04-11
Authors: Rafferty, J., Baker, P., Rice, D., Dakhil, A.
PDB entry 9qvd: cryo-EM structure of TolQRA in nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-04-11
Authors: Luo, Y., Shen, C.
PDB entry 9qve: Satellite Tobacco Necrosis Virus-1
Classification: VIRUS LIKE PARTICLE
Source organism: Satellite tobacco necrosis virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-04-11
Authors: Saunders, K., Shah, S., Peyret, H., Meshcheriakova, Y., Richardson, J., Eltschkner, S., Lawson, D.M., Lomonossoff, G.
PDB entry 9qvf: Turnip Crinkle Virus: virus-like particles (TCV-P38+1)
Classification: VIRUS LIKE PARTICLE
Source organism: Turnip crinkle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-04-11
Authors: Saunders, K., Shah, S., Peyret, H., Meshcheriakova, Y., Richardson, J., Eltschkner, S., Lawson, D.M., Lomonossoff, G.
PDB entry 9qvg: Turnip Crinkle Virus: virions (TCV-M)
Classification: VIRUS LIKE PARTICLE
Source organism: Turnip crinkle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2025-04-11
Authors: Saunders, K., Shah, S., Peyret, H., Meshcheriakova, Y., Richardson, J., Eltschkner, S., Lawson, D.M., Lomonossoff, G.
PDB entry 9qvh: Turnip Crinkle Virus: virus-like particles (TCV-P38)
Classification: VIRUS LIKE PARTICLE
Source organism: Turnip crinkle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2025-04-11
Authors: Saunders, K., Shah, S., Peyret, H., Meshcheriakova, Y., Richardson, J., Eltschkner, S., Lawson, D.M., Lomonossoff, G.
PDB entry 9qvi: Central domain of Glucan Water Dikinase-1 in alternative closed conformation
Classification: CYTOSOLIC PROTEIN
Source organism: Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2025-04-11
Authors: Laffargue, T., Cooper, N., Cioci, G., Moulis, C., Remaud-Simeon, M.
PDB entry 9qvj: Crystal structure of CtaG from Ruminiclostridium cellulolyticum (P2(1)-medium)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qvk: Crystal structure of the CtaG_C11A variant from Ruminiclostridium cellulolyticum (P2(1)-small)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qvl: Crystal structure of the CtaG_C11A variant from Ruminiclostridium cellulolyticum (P2(1)2(1)2(1)-small)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qvm: Cryo-EM reconstruction of the NEDD1 anchor protein and CDK5RAP2 bound to the gamma-tubulin ring complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2025-04-11
Authors: Munoz-Hernandez, H., Xu, Y., Wieczorek, M.
PDB entry 9qvn: Cryo-EM reconstruction of the NEDD1 anchor protein bound to the gamma-tubulin ring complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2025-04-11
Authors: Munoz-Hernandez, H., Xu, Y., Wieczorek, M.
PDB entry 9qvo: Crystal structure of the CtaG_H128A variant from Ruminiclostridium cellulolyticum (P2(1)-small)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qvp: Crystal structure of the CtaG_H128A variant from Ruminiclostridium cellulolyticum (P2(1)2(1)2(1)-medium)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qvq: Crystal structure of the CtaG_H128A variant from Ruminiclostridium cellulolyticum in complex with PHBA (P2(1)-medium)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qvr: Crystal structure of the CtaG_H128A variant from Ruminiclostridium cellulolyticum in complex with PHBA (P2(1)2(1)2(1)-medium)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qvs: Crystal structure of the CtaG_D144N variant from Ruminiclostridium cellulolyticum (P2(1)-small)
Classification: LIGASE
Source organism: Ruminiclostridium cellulolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-04-11
Authors: Gude, F., Bohne, A., Dell, M., Franke, J., Dunbar, K.L., Groll, M., Hertweck, C.
PDB entry 9qvt: Crystal structure of STING CTD in complex with potent agonist D5
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.305 Å
Deposited: 2025-04-11
Authors: dos Reis, C.V., Hsu, N.-S., Rooney, T., Skidmore, J., Bernardes, G.J.L., Hyvonen, M.
PDB entry 9qvu: Crystal structure of human lung surfactant protein D trimeric fragment with bound synthetic HepI-(1,5)-KdoI ligand
Classification: SURFACTANT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-04-12
Authors: Shrive, A.K., Greenhough, T.J., Williams, H.M.
PDB entry 9qvx: The targeting of non-fibrillar polyQ via distinct VCP-proteasome coupling
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-04-13
Authors: Zhao, D.Y., Mi, C.C.
PDB entry 9qvz: Adhiron-mediated Identification of a Novel and Selective Allosteric Pocket in Aurora Kinase A
Classification: TRANSFERASE
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-04-13
Authors: Roberts, J.R., Tomlinson, D.C.
PDB entry 9qw2: Crystal structure of human lung surfactant protein D trimeric fragment with bound synthetic HepII-HepI-PhosI ligand
Classification: SURFACTANT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-04-14
Authors: Shrive, A.K., Greenhough, T.J., Williams, H.M.
PDB entry 9qw3: Crystal structure of human lung surfactant protein D trimeric fragment with bound synthetic HepIII-HepII-HepI ligand
Classification: SURFACTANT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-04-14
Authors: Shrive, A.K., Greenhough, T.J., Williams, H.M.
PDB entry 9qw4: Crystal structure of human lung surfactant protein D trimeric fragment with bound synthetic PhosII-HepII-HepI ligand
Classification: SURFACTANT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-04-14
Authors: Shrive, A.K., Greenhough, T.J., Williams, H.M.
PDB entry 9qw5: Urate Oxidase from Aspergillus Flavus with its Inhibitor 9-Methyl Uric Acid by continuous serial electron diffraction (SerialED)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus flavus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.25 Å
Deposited: 2025-04-14
Authors: Hofer, G., Wang, L., Pacoste, L., Hager, P., Fonjallaz, A., Scaletti Hutchinson, E., Stenmark, P., Di Palma, M., Williams, L., Worral, J., Steiner, R., Xu, H., Zou, X.
PDB entry 9qw6: Urate Oxidase from Aspergillus Flavus with its Substrate Uric Acid by continuous serial electron diffraction (SerialED)
Classification: OXIDOREDUCTASE
Source organism: Aspergillus flavus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.75 Å
Deposited: 2025-04-14
Authors: Hofer, G., Wang, L., Pacoste, L., Hager, P., Fonjallaz, A., Scaletti Hutchinson, E., Stenmark, P., Di Palma, M., Williams, L., Worral, J., Steiner, R., Xu, H., Zou, X.
PDB entry 9qw7: The crystal structure of the adenyly transferase domain of Candida glabrata tRNA ligase
Classification: LIGASE
Source organism: Nakaseomyces glabratus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-04-14
Authors: McEwen, A.G., Poussin-Courmontagne, P., Giovinazzo, A., Tocchini-Valentini, G.D., Tocchini-Valentini, G.P., Pellegrini, M., Merolle, M.
PDB entry 9qw8: FKBP12 in complex with bifunctional ligand 1ad and the first bromodomain of BRD4
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-04-14
Authors: Meyners, C., Hausch, F.
PDB entry 9qw9: Human vault protein - primed conformation
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-04-14
Authors: Lapenta, F., Marechal, N., Durand, A., Aupic, J., Cassetta, A.
PDB entry 9qwb: X-ray structure of furin (PCSK3) in complex with the biphenyl-derived compound 26 (mi2456)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-14
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 9qwc: X-ray structure of furin (PCSK3) in complex with the biphenyl-derived compound 42 (mi2464)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-04-14
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 9qwd: X-ray structure of furin (PCSK3) in complex with the biphenyl-derived compound 34 (mi2470)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-14
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 9qwe: X-ray structure of furin (PCSK3) in complex with the biphenyl-derived compound 27 (mi2471)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-14
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 9qwf: X-ray structure of furin (PCSK3) in complex with the biphenyl-derived compound 13 (mi3102)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-04-14
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 9qwg: X-ray structure of furin (PCSK3) in complex with the biphenyl-derived compound 24 (mi3140)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-14
Authors: Dahms, S.O., Brandstetter, H.
PDB entry 9qwi: The N-terminal domain (44-180) of the SARS-CoV-2 nucleocapsid phosphoprotein using an automatic assignment/modeling software
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: SOLUTION NMR
Deposited: 2025-04-14
Authors: Schiavina, M., Bolognesi, T., Felli, I.C., Pierattelli, R.
PDB entry 9qwj: Crystal structure of S2c TCR in complex with CD1c
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-04-14
Authors: Karuppiah, V.
PDB entry 9qwk: Crystal structure of S2c-a5b6 TCR in complex with CD1c
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2025-04-14
Authors: Karuppiah, V., Rangel, V.L.
PDB entry 9qwl: Hemolysin-coregulated-protein-1 (Hcp1) from Bacteroides fragilis strain NCTC9343
Classification: CELL INVASION
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-14
Authors: Sauer, U.H., Cisneros, D.A.
PDB entry 9qwm: Crystal structure of catalytic domain of Rv1625c bound to inhibitory Darpin G11
Classification: SIGNALING PROTEIN
Source organism: Mycobacterium tuberculosis; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-04-14
Authors: Khanppnavar, B., Mehta, V.J., Korkhov, V.
PDB entry 9qwn: Human UPF1 in complex with the histone stem loop RNA
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-04-14
Authors: Machado de Amorim, A., Loll, B., Hilal, T., Chakrabarti, S.
PDB entry 9qwo: Vinculin tail bound to paxillin LD2
Classification: CELL ADHESION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2025-04-14
Authors: Diaz-Palacios, K., Lietha, D.
PDB entry 9qwp: Structure of the human RalGAP2 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-04-15
Authors: Rasche, R., Klink, B.U., Gatsogiannis, C., Kuemmel, D.
PDB entry 9qwr: MIC60 helical bundle dimer
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2025-04-15
Authors: Nathanail, E., Daumke, O.
PDB entry 9qws: Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (C-term dimer interface focused refinement)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-04-15
Authors: Grabarczyk, D.B., Clausen, T.
PDB entry 9qwt: Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state
Classification: RIBOSOME
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-04-15
Authors: Santo, P.E., Astier, A., Plisson-Chastang, C.
PDB entry 9qwu: Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (CALM1 focused refinement)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-04-15
Authors: Grabarczyk, D.B., Clausen, T.
PDB entry 9qwv: Trypanosoma cruzi enoyl-CoA hydratase
Classification: LYASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-04-15
Authors: Brannigan, J.A., Dodson, E.J.
PDB entry 9qww: Cryo-EM structure of plant resistance protein NRC2 dimer bound to nematode effector SPRYSEC-15
Classification: PLANT PROTEIN
Source organism: Globodera rostochiensis; Nicotiana benthamiana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-04-15
Authors: Selvaraj, M., Kamoun, S., Contreras, M.
PDB entry 9qwx: Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (N-term focused refinement)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-04-15
Authors: Grabarczyk, D.B., Clausen, T.
PDB entry 9qwy: Crystal structure of an NtA622L variant in complex with NADPH and Trigonelline
Classification: PLANT PROTEIN
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-04-15
Authors: Mokos, D., Leitner, D., Daniel, B.
PDB entry 9qwz: Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (BP focused refinement)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2025-04-15
Authors: Grabarczyk, D.B., Clausen, T.
PDB entry 9qx0: Cryo-EM structure of the human UBR4/KCMF1/CALM1 complex (C-term focused refinement)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-04-15
Authors: Grabarczyk, D.B., Clausen, T.
PDB entry 9qx1: Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (C-term dimer interface focused refinement)
Classification: LIGASE
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-04-15
Authors: Grabarczyk, D.B., Clausen, T.
PDB entry 9qx2: Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (N-term focused refinement)
Classification: LIGASE
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2025-04-15
Authors: Grabarczyk, D.B., Clausen, T.
PDB entry 9qx5: Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (side focused refinement)
Classification: LIGASE
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-04-15
Authors: Grabarczyk, D.B., Clausen, T.
PDB entry 9qx6: Crystal structure of RXR alpha LBD bound to a synthetic agonist FN537 and a coactivator fragment
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2025-04-15
Authors: Morozov, V., Merk, D., Nawa, F.
PDB entry 9qxb: SARS-CoV-2 nsp14 with N-methyl-1-(2-methyl-5-phenylpyrazol-3-yl)methanamine
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxc: SARS-CoV-2 nsp14 with 1-benzofuran-3-carboxylic acid
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxd: SARS-CoV-2 nsp14 with 2-(1H-indol-3-yl)ethanol
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxe: SARS-CoV-2 nsp14 with benzenesulfonamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxf: SARS-CoV-2 nsp14 with 5-chlorothiophene-2-sulfonamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxg: SARS-CoV-2 nsp14 with 3,4-dichlorobenzenesulfonamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxh: SARS-CoV-2 nsp14 with 2,5-dichloro-4-methylthiophene-3-sulfonamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxi: SARS-CoV-2 nsp14 with 2,5-dichlorothiophene-3-sulfonic acid
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxk: SARS-CoV-2 nsp14 with thiophene-3-sulfonamide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-04-15
Authors: Shi, X., Kozielski, F.
PDB entry 9qxl: The structure of ADGRL4 in the active-state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-04-15
Authors: Chen, Q., Favara, D.M.
PDB entry 9qxn: Crystal Structure of wild-type EGFR in complex with the reversible inhibitor Sevabertinib (BAY 2927088)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.142 Å
Deposited: 2025-04-16
Authors: Hillig, R.C.
PDB entry 9qxq: native structure of full-length pesticidal protein Cry1Ca18 at pH9, from crystals formed in vivo
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-04-16
Authors: Best, H.L., Williamson, L.J., Rizkallah, P.J., Oberthur, D., Crickmore, N., Berry, C.
PDB entry 9qxr: E. coli JetABC monomer in a DNA boarding conformation
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-04-16
Authors: Roisne-Hamelin, F., Gruber, S.
PDB entry 9qxs: E. coli JetABC dimer in a DNA boarding state
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-04-16
Authors: Roisne-Hamelin, F., Gruber, S.
PDB entry 9qxt: E. coli JetABC dimer in the DNA boarding-holding state
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å
Deposited: 2025-04-16
Authors: Roisne-Hamelin, F., Gruber, S.
PDB entry 9qxu: JetABC DNA loaded state monomer (open)
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2025-04-16
Authors: Roisne-Hamelin, F., Gruber, S.
PDB entry 9qxv: JetABC DNA loaded state monomer (closed)
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-04-16
Authors: Roisne-Hamelin, F., Gruber, S.
PDB entry 9qxw: SSX structure of Thaumatin grown in batch conditions
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-04-16
Authors: Stubbs, J., Tews, I.
PDB entry 9qxx: JetABC DNA loaded state dimer
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-04-16
Authors: Roisne-Hamelin, F., Gruber, S.
PDB entry 9qxy: SSX structure of Thaumatin grown in microfluidic droplets
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-16
Authors: Stubbs, J., Tews, I.
PDB entry 9qxz: Structure of human NONO bound to (R)-SKBG-1 in p212121
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-04-16
Authors: Fribourg, S., Fribourg, S.
PDB entry 9qy1: Endo180 (uPARAP) carbohydrate-recognition domain 2 with bound methyl fucoside
Classification: SUGAR BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-16
Authors: Drickamer, K., Feinberg, H., Weis, W.I., Taylor, M.E., Jegouzo, S.A.F.
PDB entry 9qy3: Structure of the Plum Pox Virus (PPV)
Classification: VIRUS
Source organism: Plum pox virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-04-16
Authors: Bonnet, D.M.V., Chaves-Sanjuan, A.
PDB entry 9qy7: Crystal Structure of 54e bound to CK2a
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-04-17
Authors: Brear, P., Glossop, P., Pandey, S., Hyvonen, M., Spring, D., Butt, R., Cawkill, D.
PDB entry 9qy8: Crystal structure of apoform human USP18
Classification: HYDROLASE
Source organism: Homo sapiens; Myxococcus xanthus (strain DK1622)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.919 Å
Deposited: 2025-04-17
Authors: Turnbull, A.P., Halliwell, T., Frankling, C.L.
PDB entry 9qyd: PARP9 Macro domain 1, Free form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-04-17
Authors: Fourkiotis, N.K., Chikunova, A., Tsika, C.A., Tsatsouli, A.S., Perrakis, A., Spyroulias, G.A.
PDB entry 9qye: PARP9 Macro domain 1 in complex with ADPr
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-04-17
Authors: Fourkiotis, K.N., Chikunova, A., Tsika, C.A., Tsatsouli, A.S., Perrakis, A., Spyroulias, A.G.
PDB entry 9qyf: PARP9 Macro Domain 2 in complex with ADPr
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-04-17
Authors: Fourkiotis, K.N., Chikunova, A., Tsika, C.A., Kravvariti, P.K., Tsatsouli, A.S., Perrakis, A., Spyroulias, A.G.
PDB entry 9qyg: PARP9 Macro Domain 2 Free form
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-04-17
Authors: Fourkiotis, K.N., Chikunova, A., Tsika, C.A., Kravvariti, P.K., Tsatsouli, A.S., Perrakis, A., Spyroulias, A.G.
PDB entry 9qyh: PARP9 Macro Domain 2 in complex with NAD+
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-04-17
Authors: Fourkiotis, K.N., Chikunova, A., Tsika, C.A., Kravvariti, P.K., Tsatsouli, A.S., Perrakis, A., Spyroulias, A.G.
PDB entry 9qyi: Crystal structure of human S-adenosyl-L-homocysteine hydrolase complex with adenosine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-04-18
Authors: Malecki, P.H., Imiolczyk, B., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 9qyj: Crystal structure of human S-adenosyl-L-homocysteine hydrolase in complex with adenosine and cadmium ions.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-04-18
Authors: Malecki, P.H., Imiolczyk, B., Gawel, M., Stepniewska, M., Brzezinski, K.
PDB entry 9qyk: Crystal structure of human L-lactate Dehydrogenase B protein in complex with NADH, oxamate and sertraline
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-04-18
Authors: Van Gysel, M., Wouters, J.
PDB entry 9qyl: Alpha-synuclein fibril type 1A polymorph in the presence of ATP
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-04-18
Authors: Frey, L., Riek, R., Wittung Stafshede, P.
PDB entry 9qyn: Alpha-synuclein K21A fibril type 1A polymorph in the presence of ATP
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-04-18
Authors: Frey, L., Riek, R., Wittung Stafshede, P.
PDB entry 9qyo: Structural characterization of a mannose-binding site in human RNase2
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2025-04-18
Authors: Xincheng, K., Jiarui, L., Parts-Ejarque, G., Boix, E.
PDB entry 9qyp: Crystal structure of leaf branch compost cutinase variant
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.007 Å
Deposited: 2025-04-20
Authors: Bischoff, D., Walla, B., Brames, E., Janowski, R., Niessing, D., Weuster-Botz, D.
PDB entry 9qyq: Crystal structure of leaf branch compost cutinase variant ICCG L50Y T26E
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-04-20
Authors: Bischoff, D., Walla, B., Janowski, R., Niessing, D., Weuster-Botz, D.
PDB entry 9qyr: Crystal structure of leaf branch compost cutinase variant ICCG L50Y Q183K
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2025-04-20
Authors: Bischoff, D., Walla, B., Janowski, R., Niessing, D., Weuster-Botz, D.
PDB entry 9qys: Crystal structure of leaf branch compost cutinase variant ICCG L50Y Q238K
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-04-20
Authors: Bischoff, D., Walla, B., Janowski, R., Niessing, D., Weuster-Botz, D.
PDB entry 9qyt: Crystal structure of leaf branch compost cutinase variant ICCG L50Y T110E
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2025-04-20
Authors: Bischoff, D., Walla, B., Janowski, R., Niessing, D., Weuster-Botz, D.
PDB entry 9qyu: Crystal structure of leaf branch compost cutinase quintuple variant ICCG L50Y
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2025-04-21
Authors: Bischoff, D., Walla, B., Dietrich, A.-M., Janowski, R., Niessing, D., Weuster-Botz, D.
PDB entry 9qyv: MINPP1 from Bacteroides thetaiotaomicron Q276W mutant complex with myo-inositol hexakissulfate
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-22
Authors: Shang, X.Y., Salmon, M., Hemmings, A.M.
PDB entry 9qyw: MINPP1 from Bacteroides thetaiotaomicron R275W mutant complex with myo-inositol hexakissulfate
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2025-04-22
Authors: Shang, X.Y., Salmon, M., Hemmings, A.M.
PDB entry 9qyx: MINPP1 from Bacteroides thetaiotaomicron T30E mutant complex with myo-inositol hexakissulfate
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-04-22
Authors: Shang, X.Y., Salmon, M., Hemmings, A.M.
PDB entry 9qyy: MINPP1 from Bacteroides thetaiotaomicron R183 mutant
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2025-04-22
Authors: Li, A.W.H., Shang, X.Y., Hemmings, A.M.
PDB entry 9qyz: MINPP1 from Bacteroides thetaiotaomicron A31Y mutant
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-22
Authors: Li, A.W.H., Shang, X.Y., Hemmings, A.M.
PDB entry 9qz0: MINPP1 from Bacteroides thetaiotaomicron E325N mutant complex with myo-inositol hexakisphosphate
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2025-04-22
Authors: Li, A.W.H., Shang, X.Y., Hemmings, A.M.
PDB entry 9qz1: MINPP1 from Bacteroides thetaiotaomicron E325N mutant complex with myo-inositol(1,2,4,5,6)pentaphosphate
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-04-22
Authors: Li, A.W.H., Shang, X.Y., Hemmings, A.M.
PDB entry 9qz2: MINPP1 from Bacteroides thetaiotaomicron A324D/E325N mutant
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-22
Authors: Li, A.W.H., Shang, X.Y., Hemmings, A.M.
PDB entry 9qz3: MINPP1 from Bacteroides thetaiotaomicron T30I mutant complex with myo-inositol hexakissulfate
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-04-22
Authors: Shang, X.Y., Salmon, M., Hemmings, A.M.
PDB entry 9qz4: Actinobacterial 2-hydroxyacyl-CoA lyase (AcHACL) mutant E493D structure in complex with substrate 2-HIB-CoA and inactive cofactor 3-deaza-ThDP
Classification: LYASE
Source organism: Actinomycetospora chiangmaiensis DSM 45062
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-04-22
Authors: Zahn, M., Rohwerder, T.
PDB entry 9qz5: Actinobacterial 2-hydroxyacyl-CoA lyase (AcHACL) mutant E493S structure in complex with substrate 2-HIB-CoA and inactive cofactor 3-deaza-ThDP
Classification: LYASE
Source organism: Actinomycetospora chiangmaiensis DSM 45062
Experimental method: X-RAY DIFFRACTION
Resolution: 1.572 Å
Deposited: 2025-04-22
Authors: Zahn, M., Rohwerder, T.
PDB entry 9qz6: Actinobacterial 2-hydroxyacyl-CoA lyase (AcHACL) structure in complex with 2-methylglyceryl-CoA and inactive cofactor 3-deaza-ThDP
Classification: LYASE
Source organism: Actinomycetospora chiangmaiensis DSM 45062
Experimental method: X-RAY DIFFRACTION
Resolution: 1.551 Å
Deposited: 2025-04-22
Authors: Zahn, M., Rohwerder, T.
PDB entry 9qz7: Actinobacterial 2-hydroxyacyl-CoA lyase (AcHACL) mutant E493A structure in complex with 2-methylglyceryl-CoA and inactive cofactor 3-deaza-ThDP
Classification: LYASE
Source organism: Actinomycetospora chiangmaiensis DSM 45062
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2025-04-22
Authors: Zahn, M., Rohwerder, T.
PDB entry 9qzc: Proximal A-C linker of Tetrahymena centriole, one repeating unit
Classification: STRUCTURAL PROTEIN
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-04-22
Authors: Cai, B., Xu, J.W., Luo, L., Aarts, E., Leitner, A., Ishikawa, T., Beltro, P., Pilhofer, M., Wieczorek, M.
PDB entry 9qzd: de novo NTF2-like protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-04-22
Authors: Nadal, M., Marcos, E., Castellvi, A.
PDB entry 9qze: Exploiting ALDH1A2 and ALDH1A3 Isoform Variability for Crystallization Screening
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-04-22
Authors: Garaavglia, S., Mazzorana, M.
PDB entry 9qzf: Proximal A-C linker of Tetrahymena centriole, six repeating units
Classification: STRUCTURAL PROTEIN
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-04-22
Authors: Cai, B., Xu, J.W., Luo, L., Aarts, E., Leitner, A., Ishikawa, T., Beltro, P., Pilhofer, M., Wieczorek, M.
PDB entry 9qzj: SARS-CoV-2 omicron stem-loop-II-motif (s2m_omicron)
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2025-04-23
Authors: Matzel, T., Schwalbe, H., Oxenfarth, A., Wirtz Martin, M.A.
PDB entry 9qzk: SadB of Pseudomonas aeruginosa
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2025-04-23
Authors: Opatowsky, Y., Sporny, M.
PDB entry 9qzl: Structure of NONO bound to (R)-SKBG-1 in P43212
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-04-23
Authors: Fribourg, S.
PDB entry 9qzo: Cryo-EM structure of rat SLCO2A1 in the apo state.
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-04-23
Authors: Deme, J.C., Goult, J., Lea, S.M., Newstead, S.
PDB entry 9qzq: CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-04-23
Authors: Yoon, D., Nosol, K., Rasouli, A., Bang-Soerensen, R., Irobalieva, R.N., Liu, H., Tajkhorshid, E., Locher, K.P.
PDB entry 9qzt: Room temperature structure of Glycine max phyA in Pfr/Pr ensemble
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-04-24
Authors: Nagano, S., Hughes, J.
PDB entry 9r00: De novo NTF2-like protein with a 2-helix C-terminal extension.
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-04-24
Authors: Nadal, M., Marcos, E., Castellvi, A.
PDB entry 9r04: p53 bound to the nucleosome at position SHL-5.7 (crosslinked sample)
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-04-24
Authors: Chakraborty, D., Michael, A.K., Kempf, G., Cavadini, S., Kater, L., Thoma, N.H.
PDB entry 9r07: Cryo-EM structure of rat SLCO2A1 bound to zafirlukast.
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-04-24
Authors: Joshi, C., Newstead, S.
PDB entry 9r08: Structure of the human heterotetrameric cis-prenyltransferase complex harboring NgBR-S249A in complex with magnesium, FsPP and IPP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-04-24
Authors: Giladi, M., Haitin, Y.