LiteFold/PDB huggingface dataset:
PDB entry 3awk: Crystal structure of the polyketide synthase 1 from huperzia serrata
Classification: TRANSFERASE
Source organism: Huperzia serrata
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-03-23
Authors: Morita, H., Kondo, S., Kato, R., Sugio, S., Kohno, T., Abe, I.
PDB entry 3awm: Cytochrome P450SP alpha (CYP152B1) wild-type with palmitic acid
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2011-03-25
Authors: Fujishiro, T., Shoji, O., Nagano, S., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 3awn: Crystal structure of D-serine dehydratase from chicken kidney (EDTA treated)
Classification: LYASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2011-03-25
Authors: Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.
PDB entry 3awo: Crystal structure of D-serine dehydratase in complex with D-serine from chicken kidney (EDTA-treated)
Classification: LYASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2011-03-25
Authors: Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.
PDB entry 3awp: Cytochrome P450SP alpha (CYP152B1) mutant F288G
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-03-25
Authors: Fujishiro, T., Shoji, O., Nagano, S., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 3awq: Cytochrome P450SP alpha (CYP152B1) mutant L78F
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-03-25
Authors: Fujishiro, T., Shoji, O., Nagano, S., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 3awr: Crystal structure of Rat TOM20-ALDH presequence complex: The intermolecular disulfide bond was cleaved in the crystal of a disulfide-tethered complex.
Classification: MEMBRANE PROTEIN/TRANSPORT PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-03-26
Authors: Igura, M., Ose, T., Kohda, D.
PDB entry 3aws: Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 20 hr: occupancy of Cu(II) is low
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3awt: Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 20 hr: occupancy of Cu(II) is high
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3awu: Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 40 h
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3awv: Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 80 hr: occupancy of CuA is low
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3aww: Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 80 hr: occupancy of CuA is high
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3awx: Crystal structure of Streptomyces tyrosinase in a complex with caddie H82Q mutant soaked in a Cu(II)-containing solution for 80 hr
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3awy: Crystal structure of Streptomyces tyrosinase in a complex with caddie M84L mutant soaked in a Cu(II)-containing solution for 80 hr
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3awz: Crystal structure of Streptomyces tyrosinase in a complex with caddie H97Q mutant soaked in a Cu(II)-containing solution for 80 hr
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3ax0: Crystal structure of Streptomyces tyrosinase in a complex with caddie Y98F mutant soaked in a Cu(II)-containing solution for 80 hr
Classification: OXIDOREDUCTASE/METAL TRANSPORT
Source organism: Streptomyces castaneoglobisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2011-03-26
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3ax1: Molecular insights into miRNA processing by Arabidopsis Serrate
Classification: PROTEIN BINDING
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2011-03-28
Authors: Yuan, Y.A., Machida, S., Chen, H.Y.
PDB entry 3ax2: Crystal structure of rat TOM20-ALDH presequence complex: a disulfide-tethered complex with a non-optimized, long linker
Classification: MEMBRANE PROTEIN/TRANSPORT PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-03-28
Authors: Saitoh, T., Maita, Y., Kohda, D.
PDB entry 3ax3: Crystal structure of rat TOM20-ALDH presequence complex: a complex (form2) between Tom20 and a disulfide-bridged presequence peptide containing D-Cys and L-Cys at the i and i+3 positions.
Classification: MEMBRANE PROTEIN/TRANSPORT PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-03-28
Authors: Saitoh, T., Maita, Y., Kohda, D.
PDB entry 3ax4: Three-dimensional structure of lectin from Dioclea violacea and comparative vasorelaxant effects with Dioclea rostrata
Classification: SUGAR BINDING PROTEIN
Source organism: Dioclea violacea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.613 Å
Deposited: 2011-03-29
Authors: Bezerra, M.J.B., Bezerra, G.A., Martins, J.L., Nascimento, K.S., Nagano, C.S., Gruber, K., Assereuy, A.M., Delatorre, P., Rocha, B.A.M., Cavada, B.S.
PDB entry 3ax5: Crystal structure of rat TOM20-ALDH presequence complex: A complex (form1) between Tom20 and a disulfide-bridged presequence peptide containing D-Cys and L-Cys at the i and i+3 positions.
Classification: MEMBRANE PROTEIN/TRANSPORT PROTEIN
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-03-29
Authors: Saitoh, T., Maita, Y., Kohda, D.
PDB entry 3ax6: Crystal structure of N5-carboxyaminoimidazole ribonucleotide synthetase from Thermotoga maritima
Classification: LIGASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-03-30
Authors: Miyazawa, R., Kanagawa, M., Baba, S., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3ax7: Bovine Xanthine Oxidase, protease cleaved form
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2011-03-30
Authors: Ishikita, H., Eger, B.T., Pai, E.F., Okamoto, K., Nishino, T.
PDB entry 3ax8: Crystal structure of the human vitamin D receptor ligand binding domain complexed with 15alpha-methoxy-1alpha,25-dihydroxyvitamin D3
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2011-03-30
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3ax9: Bovine xanthine oxidase, protease cleaved form
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2011-03-31
Authors: Ishikita, H., Eger, B.T., Pai, E.F., Okamoto, K., Nishino, T.
PDB entry 3axa: Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from nectin-3
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2011-03-31
Authors: Fujiwara, Y., Goda, N., Narita, H., Satomura, K., Nakagawa, A., Sakisaka, T., Suzuki, M., Hiroaki, H.
PDB entry 3axb: Structure of a dye-linked L-proline dehydrogenase from the aerobic hyperthermophilic archaeon, Aeropyrum pernix
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2011-04-01
Authors: Sakuraba, H., Ohshima, T., Satomura, T., Yoneda, K., Hara, Y.
PDB entry 3axc: Crystal structure of linear diubiquitin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2011-04-01
Authors: Rohaim, A., Kawasaki, M., Kato, R., Dikic, I., Wakatsuki, S.
PDB entry 3axd: The truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase V18Y/W203Y in apo-form
Classification: HYDROLASE
Source organism: Fibrobacter succinogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2011-04-03
Authors: Huang, J.W., Cheng, Y.S., Ko, T.P., Lin, C.Y., Lai, H.L., Chen, C.C., Ma, Y., Huang, C.H., Zheng, Y., Liu, J.R., Guo, R.T.
PDB entry 3axe: The truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase V18Y/W203Y in complex with cellotetraose (cellobiose density was observed)
Classification: HYDROLASE
Source organism: Fibrobacter succinogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2011-04-04
Authors: Huang, J.W., Cheng, Y.S., Ko, T.P., Lin, C.Y., Lai, H.L., Chen, C.C., Ma, Y., Huang, C.H., Zheng, Y., Liu, J.R., Guo, R.T.
PDB entry 3axf: Perrhenate binding to A11C/R153C ModA mutant
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-04-04
Authors: He, C., Aryal, B.P., Brugarolas, P.
PDB entry 3axg: Structure of 6-aminohexanoate-oligomer hydrolase
Classification: HYDROLASE
Source organism: Agromyces
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-04-04
Authors: Negoro, S., Shibata, N., Tanaka, Y., Yasuhira, K., Shibata, H., Hashimoto, H., Lee, Y.H., Ohshima, S., Santa, R., Mochiji, K., Goto, Y., Ikegami, T., Nagai, K., Kato, D., Takeo, M., Higuchi, Y.
PDB entry 3axh: Crystal structure of isomaltase in complex with isomaltose
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-04-06
Authors: Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
PDB entry 3axi: Crystal structure of isomaltase in complex with maltose
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2011-04-06
Authors: Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
PDB entry 3axj: High resolution crystal structure of C3PO
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-04-07
Authors: Yuan, Y.A., Yang, X.
PDB entry 3axk: Structure of rice Rubisco in complex with NADP(H)
Classification: LYASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-04-11
Authors: Matsumura, H., Mizohata, E., Ishida, H., Kogami, A., Ueno, T., Makino, A., Inoue, T., Yokota, A., Mae, T., Kai, Y.
PDB entry 3axl: Murine Valpha 10 Vbeta 8.1 T-cell receptor
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2011-04-11
Authors: Patel, O., Rossjohn, J.
PDB entry 3axm: Structure of rice Rubisco in complex with 6PG
Classification: LYASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2011-04-11
Authors: Matsumura, H., Mizohata, E., Ishida, H., Kogami, A., Ueno, T., Makino, A., Inoue, T., Yokota, A., Mae, T., Kai, Y.
PDB entry 3axs: Complex structure of tRNA methyltransferase Trm1 from Aquifex aeolicus with sinefungin
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.162 Å
Deposited: 2011-04-13
Authors: Ihsanawati, Sengoku, T., Yokoyama, S., Bessho, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3axt: Complex structure of tRNA methyltransferase Trm1 from Aquifex aeolicus with S-adenosyl-L-Methionine
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.491 Å
Deposited: 2011-04-14
Authors: Ihsanawati, Sengoku, T., Yokoyama, S., Bessho, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3axw: Crystal structure of human CK2alpha complexed with a potent inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2011-04-18
Authors: Kinoshita, T., Nakanishi, I.
PDB entry 3axx: Functional analysis of hyperthermophilic endocellulase from the Archaeon Pyrococcus horikoshii
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-04-18
Authors: Kim, H.-W., Ishikawa, K.
PDB entry 3axy: Structure of Florigen Activation Complex Consisting of Rice Florigen Hd3a, 14-3-3 Protein GF14 and Rice FD Homolog OsFD1
Classification: SIGNALING PROTEIN/PROTEIN BINDING
Source organism: Oryza sativa Japonica Group; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2011-04-19
Authors: Ohki, I., Furuita, K., Hayashi, K., Taoka, K., Tsuji, H., Nakagawa, A., Shimamoto, K., Kojima, C.
PDB entry 3axz: Crystal structure of Haemophilus influenzae TrmD in complex with adenosine
Classification: TRANSFERASE
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2011-04-21
Authors: Yoshida, K., Goto-Ito, S., Ito, T., Hou, Y.M., Yokoyama, S.
PDB entry 3ay0: Crystal structure of Methanocaldococcus jannaschii Trm5 in complex with adenosine
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2011-04-21
Authors: Goto-Ito, S., Ito, T., Hou, Y.M., Yokoyama, S.
PDB entry 3ay2: Crystal structure of Neisserial azurin
Classification: ANTITUMOR PROTEIN, ANTIVIRAL PROTEIN
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-04-24
Authors: Ochiai, A., Hashimoto, W., Yamada, T., Chakrabarty, A.M., Murata, K.
PDB entry 3ay3: Crystal structure of glucuronic acid dehydrogeanse from Chromohalobacter salexigens
Classification: OXIDOREDUCTASE
Source organism: Chromohalobacter salexigens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-04-26
Authors: Ahn, J.-W., Kim, S., Kim, K.-J.
PDB entry 3ay4: Crystal structure of nonfucosylated Fc complexed with bis-glycosylated soluble form of Fc gamma receptor IIIa
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-04-28
Authors: Mizushima, T., Takemoto, E., Yagi, H., Shibata-Koyama, M., Isoda, Y., Iida, S., Satoh, M., Kato, K.
PDB entry 3ay5: Crystal structure of HHM (human homologue of murine maternal Id-like molecule)
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2011-04-28
Authors: Seto, A., Ishitani, R., Nureki, O.
PDB entry 3ay6: Crystal structure of Bacillus megaterium glucose dehydrogenase 4 A258F mutant in complex with NADH and D-glucose
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-04-29
Authors: Nishioka, T., Yasutake, Y., Nishiya, Y., Tamura, T.
PDB entry 3ay7: Crystal structure of Bacillus megaterium glucose dehydrogenase 4 G259A mutant
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-04-29
Authors: Nishioka, T., Yasutake, Y., Nishiya, Y., Tamura, T.
PDB entry 3ay8: Glutathione S-transferase unclassified 2 from Bombyx mori
Classification: TRANSFERASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-05-02
Authors: Kakuta, Y., Usuda, K., Nakashima, T., Kimura, M., Aso, Y., Yamamoto, K.
PDB entry 3ay9: Crystal structure of human Hsp70 NBD in the ADP-, Mg ion-, and K ion-bound state
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2011-05-03
Authors: Arakawa, A., Handa, N., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3aya: Crystal structure of galectin-3 CRD domian complexed with Thomsen-Friedenreich antigen
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-05-04
Authors: Bian, C.F., Li, D.F., Wang, D.C.
PDB entry 3ayc: Crystal structure of galectin-3 CRD domian complexed with GM1 pentasaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-05-04
Authors: Bian, C.F., Li, D.F., Wang, D.C.
PDB entry 3ayd: Crystal structure of galectin-3 CRD domian complexed with TFN
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-05-04
Authors: Bian, C.F., Li, D.F., Wang, D.C.
PDB entry 3aye: Crystal structure of galectin-3 CRD domian complexed with lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-05-04
Authors: Bian, C.F., Li, D.F., Wang, D.C.
PDB entry 3ayf: Crystal structure of nitric oxide reductase
Classification: OXIDOREDUCTASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2011-05-06
Authors: Matsumoto, Y., Tosha, T., Pisliakov, A.V., Hino, T., Sugimoti, H., Nagano, S., Sugita, Y., Shiro, Y.
PDB entry 3ayg: Crystal structure of nitric oxide reductase complex with HQNO
Classification: OXIDOREDUCTASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-05-06
Authors: Matsumoto, Y., Tosha, T., Pisliakov, A.V., Hino, T., Sugimoti, H., Nagano, S., Sugita, Y., Shiro, Y.
PDB entry 3ayh: Crystal structure of the C17/25 subcomplex from S. pombe RNA Polymerase III
Classification: TRANSCRIPTION
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.193 Å
Deposited: 2011-05-06
Authors: Ehara, H., Sekine, S., Yokoyama, S.
PDB entry 3ayi: X-ray crystal structures of L-phenylalanine oxidase (deaminating and decaboxylating) from Pseudomonas sp. P501. Structures of the enzyme-ligand complex and catalytic mechanism
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2011-05-07
Authors: Ida, K., Suguro, M., Suzuki, H.
PDB entry 3ayj: X-ray crystal structures of L-phenylalanine oxidase (deaminating and decaboxylating) from Pseudomonas sp. P501. Structures of the enzyme-ligand complex and catalytic mechanism
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2011-05-07
Authors: Ida, K., Suguro, M., Suzuki, H.
PDB entry 3ayk: CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE COMPLEXED WITH CGS-27023A, NMR, MINIMIZED AVERAGE STRUCTURE
Classification: MATRIX METALLOPROTEINASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 1999-02-01
Authors: Powers, R., Moy, F.J.
PDB entry 3ayl: X-ray crystal structures of L-phenylalanine oxidase (deaminating and decaboxylating) from Pseudomonas sp. P501. Structures of the enzyme-ligand complex and catalytic mechanism
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2011-05-07
Authors: Suzuki, H.
PDB entry 3aym: Crystal structure of the batho intermediate of squid rhodopsin
Classification: SIGNALING PROTEIN
Source organism: Todarodes pacificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2011-05-09
Authors: Murakami, M., Kouyama, T.
PDB entry 3ayn: Crystal structure of squid isorhodopsin
Classification: SIGNALING PROTEIN
Source organism: Todarodes pacificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-05-09
Authors: Murakami, M., Kouyama, T.
PDB entry 3ayq: Crystal structure of inhibitor bound lysozyme from Meretrix lusoria
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Meretrix lusoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2011-05-13
Authors: Yoneda, K., Kuwano, Y., Usui, T., Ogata, M., Suzuki, A., Araki, T.
PDB entry 3ayr: GH5 endoglucanase EglA from a ruminal fungus
Classification: HYDROLASE
Source organism: Piromyces rhizinflatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-05-16
Authors: Tseng, C.-W., Ko, T.-P., Guo, R.-T., Liu, J.-R.
PDB entry 3ays: GH5 endoglucanase from a ruminal fungus in complex with cellotriose
Classification: HYDROLASE
Source organism: Piromyces rhizinflatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-05-16
Authors: Tseng, C.-W., Ko, T.-P., Guo, R.-T., Liu, J.-R.
PDB entry 3ayt: TTHB071 protein from Thermus thermophilus HB8
Classification: UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2011-05-17
Authors: Nakane, S., Wakamatsu, T., Fukui, K., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3ayu: Crystal structure of MMP-2 active site mutant in complex with APP-drived decapeptide inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-05-17
Authors: Hashimoto, H., Takeuchi, T., Komatsu, K., Miyazaki, K., Sato, M., Higashi, S.
PDB entry 3ayv: TTHB071 protein from Thermus thermophilus HB8 soaking with ZnCl2
Classification: UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2011-05-17
Authors: Nakane, S., Wakamatsu, T., Fukui, K., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3ayw: Crystal Structure of Human Nucleosome Core Particle Containing H3K56Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2011-05-19
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3ayx: Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an H2-reduced condition
Classification: OXIDOREDUCTASE
Source organism: Hydrogenovibrio marinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2011-05-20
Authors: Shomura, Y., Yoon, K.S., Nishihara, H., Higuchi, Y.
PDB entry 3ayz: Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an air-oxidized condition
Classification: OXIDOREDUCTASE
Source organism: Hydrogenovibrio marinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2011-05-20
Authors: Shomura, Y., Yoon, K.S., Nishihara, H., Higuchi, Y.
PDB entry 3az1: Crystal Structure Analysis of Vitamin D receptor
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2011-05-20
Authors: Itoh, S., Iijima, S.
PDB entry 3az2: Crystal Structure Analysis of Vitamin D receptor
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2011-05-20
Authors: Itoh, S., Iijima, S.
PDB entry 3az3: Crystal Structure Analysis of Vitamin D receptor
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2011-05-20
Authors: Itoh, S., Iijima, S.
PDB entry 3az4: Crystal structure of Co/O-HEWL
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2011-05-20
Authors: Abe, S., Tsujimoto, M., Yoneda, K., Ohba, M., Hikage, T., Takano, M., Kitagawa, S., Ueno, T.
PDB entry 3az5: Crystal structure of Pt/O-HEWL
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2011-05-20
Authors: Abe, S., Tsujimoto, M., Yoneda, K., Ohba, M., Hikage, T., Takano, M., Kitagawa, S., Ueno, T.
PDB entry 3az6: Crystal structure of Co/T-HEWL
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2011-05-20
Authors: Abe, S., Tsujimoto, M., Yoneda, K., Ohba, M., Hikage, T., Takano, M., Kitagawa, S., Ueno, T.
PDB entry 3az7: Crystal structure of Pt/T-HEWL
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-05-20
Authors: Abe, S., Tsujimoto, M., Yoneda, K., Ohba, M., Hikage, T., Takano, M., Kitagawa, S., Ueno, T.
PDB entry 3az8: Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Plasmodium falciparum in complex with NAS21
Classification: LYASE/INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2011-05-20
Authors: Maity, K., Venkata, B.S., Kapoor, N., Surolia, N., Surolia, A., Suguna, K.
PDB entry 3az9: Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Plasmodium falciparum in complex with NAS91
Classification: LYASE/INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2011-05-21
Authors: Maity, K., Venkata, B.S., Kapoor, N., Surolia, N., Surolia, A., Suguna, K.
PDB entry 3aza: Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Plasmodium falciparum in complex with NAS91-10
Classification: LYASE/INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-05-21
Authors: Maity, K., Venkata, B.S., Kapoor, N., Surolia, N., Surolia, A., Suguna, K.
PDB entry 3azb: Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Plasmodium falciparum in complex with NAS91-11
Classification: LYASE/INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2011-05-21
Authors: Maity, K., Venkata, B.S., Kapoor, N., Surolia, N., Surolia, A., Suguna, K.
PDB entry 3azc: Crystal structure of the soluble part of cytochrome b6f complex iron-sulfur subunit from Thermosynechococcus elongatus BP-1
Classification: OXIDOREDUCTASE
Source organism: Thermosynechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-05-23
Authors: Veit, S., Takeda, K., Tsunoyama, Y., Roegner, M., Miki, K.
PDB entry 3azd: Crystal structure of tropomyosin N-terminal fragment at 0.98A resolution
Classification: ACTIN-BINDING PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2011-05-23
Authors: Meshcheryakov, V.A., Krieger, I., Kostyukova, A.S., Samatey, F.A.
PDB entry 3aze: Crystal Structure of Human Nucleosome Core Particle Containing H3K64Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azf: Crystal Structure of Human Nucleosome Core Particle Containing H3K79Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azg: Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azh: Crystal Structure of Human Nucleosome Core Particle Containing H3K122Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azi: Crystal Structure of Human Nucleosome Core Particle Containing H4K31Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azj: Crystal Structure of Human Nucleosome Core Particle Containing H4K44Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azk: Crystal Structure of Human Nucleosome Core Particle Containing H4K59Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azl: Crystal Structure of Human Nucleosome Core Particle Containing H4K77Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azm: Crystal Structure of Human Nucleosome Core Particle Containing H4K79Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azn: Crystal Structure of Human Nucleosome Core Particle Containing H4K91Q mutation
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-05-25
Authors: Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
PDB entry 3azo: Crystal structure of puromycin hydrolase
Classification: HYDROLASE
Source organism: Streptomyces morookaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-05-27
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3azp: Crystal structure of puromycin hydrolase S511A mutant
Classification: HYDROLASE
Source organism: Streptomyces morookaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2011-05-27
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3azq: Crystal structure of puromycin hydrolase S511A mutant complexed with PGG
Classification: HYDROLASE
Source organism: Streptomyces morookaensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-05-27
Authors: Matoba, Y., Sugiyama, M.
PDB entry 3azr: Diverse Substrates Recognition Mechanism Revealed by Thermotoga maritima Cel5A Structures in Complex with Cellobiose
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2011-05-30
Authors: Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Chen, C.C., Cheng, Y.S., Liu, J.R., Guo, R.T.
PDB entry 3azs: Diverse Substrates Recognition Mechanism Revealed by Thermotoga maritima Cel5A Structures in Complex with Mannotriose
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2011-05-30
Authors: Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Chen, C.C., Cheng, Y.S., Liu, J.R., Guo, R.T.
PDB entry 3azt: Diverse Substrates Recognition Mechanism Revealed by Thermotoga maritima Cel5A Structures in Complex with Cellotetraose
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-05-30
Authors: Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Chen, C.C., Cheng, Y.S., Liu, J.R., Guo, R.T.
PDB entry 3azu: X-RAY CRYSTAL STRUCTURE OF THE TWO SITE-SPECIFIC MUTANTS HIS35GLN AND HIS35LEU OF AZURIN FROM PSEUDOMONAS AERUGINOSA
Classification: ELECTRON TRANSFER(CUPROPROTEIN)
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1991-01-11
Authors: Messerschmidt, A., Nar, H., Huber, R.
PDB entry 3azv: Crystal structure of the receptor binding domain
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2011-06-02
Authors: Nuemket, N., Tanaka, Y., Tsukamoto, K., Tsuji, T., Nakamura, K., Kozaki, S., Yao, M., Tanaka, I.
PDB entry 3azw: Crystal structure of the receptor binding domain
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2011-06-02
Authors: Nuemket, N., Tanaka, Y., Tsukamoto, K., Tsuji, T., Nakamura, K., Kozaki, S., Yao, M., Tanaka, I.
PDB entry 3azx: Crystal structure of the laminarinase catalytic domain from Thermotoga maritima MSB8
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-06-03
Authors: Jeng, W.Y., Wang, N.C., Wang, A.H.J.
PDB entry 3azy: Crystal structure of the laminarinase catalytic domain from Thermotoga maritima MSB8
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2011-06-03
Authors: Jeng, W.Y., Wang, N.C., Wang, A.H.J.
PDB entry 3azz: Crystal structure of the laminarinase catalytic domain from Thermotoga maritima MSB8 in complex with gluconolactone
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2011-06-03
Authors: Jeng, W.Y., Wang, N.C., Wang, A.H.J.
PDB entry 3b00: Crystal structure of the laminarinase catalytic domain from Thermotoga maritima MSB8 in complex with cetyltrimethylammonium bromide
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2011-06-03
Authors: Jeng, W.Y., Wang, N.C., Wang, A.H.J.
PDB entry 3b01: Crystal structure of the laminarinase catalytic domain from Thermotoga maritima MSB8
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2011-06-03
Authors: Jeng, W.Y., Wang, N.C., Wang, A.H.J.
PDB entry 3b02: Crystal structure of TTHB099, a transcriptional regulator CRP family from Thermus thermophilus HB8
Classification: TRANSCRIPTION REGULATOR
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2011-06-03
Authors: Agari, Y., Kuramitsu, S., Shinkai, A., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3b03: Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with vIPP.
Classification: ISOMERASE
Source organism: Sulfolobus shibatae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-06-03
Authors: Unno, H., Nagai, T., Hemmi, H.
PDB entry 3b04: Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with oIPP.
Classification: ISOMERASE
Source organism: Sulfolobus shibatae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2011-06-03
Authors: Unno, H., Nagai, T., Hemmi, H.
PDB entry 3b05: Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and IPP at 2.2A resolution.
Classification: ISOMERASE
Source organism: Sulfolobus shibatae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-06-03
Authors: Unno, H., Nagai, T., Hemmi, H.
PDB entry 3b06: Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and DMAPP.
Classification: ISOMERASE
Source organism: Sulfolobus shibatae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2011-06-03
Authors: Unno, H., Nagai, T., Hemmi, H.
PDB entry 3b07: Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.495 Å
Deposited: 2011-06-06
Authors: Yamashita, K., Kawai, Y., Tanaka, Y., Yao, M., Tanaka, I.
PDB entry 3b08: Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin
Classification: SIGNALING PROTEIN/METAL BINDING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.701 Å
Deposited: 2011-06-07
Authors: Sato, Y., Fujita, H., Yoshikawa, A., Yamashita, M., Yamagata, A., Kaiser, S.E., Iwai, K., Fukai, S.
PDB entry 3b09: Crystal structure of the N-domain of FKBP22 from Shewanella sp. SIB1
Classification: CHAPERONE
Source organism: Shewanella
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-06-07
Authors: Budiman, C., Angkawidjaja, C., Motoike, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3b0a: Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin
Classification: SIGNALING PROTEIN/METAL BINDING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-06-07
Authors: Sato, Y., Fujita, H., Yoshikawa, A., Yamashita, M., Yamagata, A., Kaiser, S.E., Iwai, K., Fukai, S.
PDB entry 3b0b: Crystal structure of the chicken CENP-S/CENP-X complex
Classification: DNA BINDING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2011-06-08
Authors: Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.
PDB entry 3b0c: Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form I
Classification: DNA BINDING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2011-06-08
Authors: Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.
PDB entry 3b0d: Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form II
Classification: DNA BINDING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.197 Å
Deposited: 2011-06-08
Authors: Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.
PDB entry 3b0f: Crystal structure of the UBA domain of p62 and its interaction with ubiquitin
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2011-06-09
Authors: Isogai, S., Morimoto, D., Arita, K., Unzai, S., Tenno, T., Hasegawa, J., Sou, Y., Komatsu, M., Tanaka, K., Shirakawa, M., Tochio, H.
PDB entry 3b0g: Assimilatory nitrite reductase (Nii3) from tobbaco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2011-06-09
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3b0h: Assimilatory nitrite reductase (Nii4) from tobbaco root
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.306 Å
Deposited: 2011-06-09
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3b0i: Crystal structure of recombinant human alpha lactalbumin
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2011-06-10
Authors: Makabe, K.
PDB entry 3b0j: M175E mutant of assimilatory nitrite reductase (Nii3) from tobbaco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-06-10
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3b0k: Crystal structure of alpha-lactalbumin
Classification: METAL BINDING PROTEIN
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2011-06-10
Authors: Makabe, K.
PDB entry 3b0l: M175G mutant of assimilatory nitrite reductase (Nii3) from tobbaco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-06-10
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3b0m: M175K mutant of assimilatory nitrite reductase (Nii3) from tobbaco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2011-06-10
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3b0n: Q448K mutant of assimilatory nitrite reductase (Nii3) from tobbaco leaf
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2011-06-10
Authors: Nakano, S., Takahashi, M., Sakamoto, A., Morikawa, H., Katayanagi, K.
PDB entry 3b0o: Crystal structure of alpha-lactalbumin
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2011-06-10
Authors: Makabe, K., Kuwajima, K.
PDB entry 3b0p: tRNA-dihydrouridine synthase from Thermus thermophilus
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2011-06-12
Authors: Yu, F., Tanaka, Y., Yamashita, K., Nakamura, A., Yao, M., Tanaka, I.
PDB entry 3b0q: Human PPAR gamma ligand binding domain in complex with MCC555
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2011-06-13
Authors: Tomioka, D., Hashimoto, H., Sato, M., Shimizu, T.
PDB entry 3b0r: Human PPAR gamma ligand binding dmain complexed with GW9662 in a covalent bonded form
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2011-06-13
Authors: Tomioka, D., Hashimoto, H., Sato, M., Shimizu, T.
PDB entry 3b0s: Crystal Structure of (Gly-Pro-Hyp)9
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2011-06-14
Authors: Okuyama, K., Miyama, K., Mizuno, K., Bachinger, H.P.
PDB entry 3b0t: Human VDR ligand binding domain in complex with maxacalcitol
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2011-06-14
Authors: Hishiki, A., Hashimoto, H., Sato, M., Shimizu, T.
PDB entry 3b0u: tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA fragment
Classification: OXIDOREDUCTASE/RNA
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.948 Å
Deposited: 2011-06-14
Authors: Yu, F., Tanaka, Y., Yamashita, K., Nakamura, A., Yao, M., Tanaka, I.
PDB entry 3b0v: tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA
Classification: OXIDOREDUCTASE/RNA
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2011-06-14
Authors: Yu, F., Tanaka, Y., Yamashita, K., Nakamura, A., Yao, M., Tanaka, I.
PDB entry 3b0w: Crystal structure of the orphan nuclear receptor ROR(gamma)t ligand-binding domain in complex with digoxin
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2011-06-17
Authors: Fujita-Sato, S., Ito, S., Isobe, T., Ohyama, T., Wakabayashi, K., Morishita, K., Ando, O., Isono, F.
PDB entry 3b0x: K263A mutant of PolX from Thermus thermophilus HB8 complexed with Ca-dGTP
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2011-06-17
Authors: Nakane, S., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3b0y: K263D mutant of PolX from Thermus thermophilus HB8 complexed with Ca-dGTP
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2011-06-17
Authors: Nakane, S., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3b0z: Crystal structure of cytoplasmic domain of FlhB from Salmonella typhimurium
Classification: PROTEIN TRANSPORT
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2011-06-17
Authors: Meshcheryakov, V.A., Samatey, F.A.
PDB entry 3b12: Crystal Structure of the Fluoroacetate Dehalogenase D104 mutant from Burkholderia sp. FA1 in complex with fluoroacetate
Classification: HYDROLASE
Source organism: Burkholderia sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2011-06-19
Authors: Omi, R., Hirotsu, K.
PDB entry 3b13: Crystal structure of the DHR-2 domain of DOCK2 in complex with Rac1 (T17N mutant)
Classification: PROTEIN BINDING/SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.006 Å
Deposited: 2011-06-24
Authors: Hanawa-Suetsugu, K., Kukimoto-Niino, M., Mishima-Tsumagari, C., Terada, T., Shirouzu, M., Fukui, Y., Yokoyama, S.
PDB entry 3b18: Rv0098 of Mycobacterium tuberculosis with ordered loop between beta-4 and beta-5
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2011-06-26
Authors: Maity, K., Suguna, K.
PDB entry 3b1b: The unique structure of wild type carbonic anhydrase alpha-CA1 from Chlamydomonas reinhardtii
Classification: LYASE
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2011-06-29
Authors: Shimizu, S., Takenaka, A.
PDB entry 3b1c: Crystal structure of betaC-S lyase from Streptococcus anginosus: Internal aldimine form
Classification: LYASE
Source organism: Streptococcus anginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2011-06-29
Authors: Kezuka, Y., Yoshida, Y., Nonaka, T.
PDB entry 3b1d: Crystal structure of betaC-S lyase from Streptococcus anginosus in complex with L-serine: External aldimine form
Classification: LYASE
Source organism: Streptococcus anginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2011-06-29
Authors: Kezuka, Y., Yoshida, Y., Nonaka, T.