LiteFold/PDB huggingface dataset:
PDB entry 4v5r: The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-12-07
Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
PDB entry 4v5s: The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-12-07
Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
PDB entry 4v5t: X-ray structure of the Grapevine Fanleaf virus
Classification: VIRUS
Source organism: GRAPEVINE FANLEAF VIRUS
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-02-01
Authors: Schellenberger, P., Sauter, C., Lorber, B., Bron, P., Trapani, S., Bergdoll, M., Marmonier, A., Schmitt-Keichinger, C., Lemaire, O., Demangeat, G., Ritzenthaler, C.
PDB entry 4v5v: Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form
Classification: VIRAL PROTEIN/RNA
Source organism: ESCHERICHIA COLI; HUMAN RESPIRATORY SYNCYTIAL VIRUS
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2011-05-04
Authors: El Omari, K., Dhaliwal, B., Ren, J., Abrescia, N.G.A., Lockyer, M., Powell, K.L., Hawkins, A.R., Stammers, D.K.
PDB entry 4v5w: Grapevine Fanleaf virus
Classification: VIRUS
Source organism: GRAPEVINE FANLEAF VIRUS
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2011-05-10
Authors: Schellenberger, P., Demangeat, G., Ritzenthaler, C., Lorber, B., Sauter, C.
PDB entry 4v5x: The cryo-EM structure of a 3D DNA-origami object
Classification: DNA
Source organism: ENTEROBACTERIA PHAGE M13; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.5 Å
Deposited: 2012-10-09
Authors: Bai, X.C., Martin, T.G., Scheres, S.H.W., Dietz, H.
PDB entry 4v5y: Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.45 Å
Deposited: 2007-06-19
Authors: Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.
PDB entry 4v5z: Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map
Classification: RIBOSOMAL PROTEIN/RNA
Source organism: Canis familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.7 Å
Deposited: 2008-03-27
Authors: Chandramouli, P., Akey, C.W.
PDB entry 4v60: The structure of rat liver vault at 3.5 angstrom resolution
Classification: STRUCTURAL PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2008-10-24
Authors: Kato, K., Zhou, Y., Tanaka, H., Yao, M., Yamashita, E., Yoshimura, M., Tsukihara, T.
PDB entry 4v61: Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
Classification: RIBOSOME
Source organism: Spinacea oleracea
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å
Deposited: 2007-11-09
Authors: Sharma, M.R., Wilson, D.N., Datta, P.P., Barat, C., Schluenzen, F., Fucini, P., Agrawal, R.K.
PDB entry 4v62: Crystal Structure of cyanobacterial Photosystem II
Classification: ELECTRON TRANSPORT
Source organism: Thermosynechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-01-17
Authors: Guskov, A., Gabdulkhakov, A., Kern, J., Broser, M., Zouni, A., Saenger, W.
PDB entry 4v63: Structural basis for translation termination on the 70S ribosome.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.207 Å
Deposited: 2008-05-16
Authors: Laurberg, M., Asahara, H., Korostelev, A., Zhu, J., Trakhanov, S., Noller, H.F.
PDB entry 4v64: Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2008-06-11
Authors: Borovinskaya, M.A., Shoji, S., Fredrick, K., Cate, J.H.D.
PDB entry 4v65: Structure of the E. coli ribosome in the Pre-accommodation state
Classification: RIBOSOME
Source organism: Escherichia coli; Shigella sonnei; Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2008-08-03
Authors: Devkota, B., Caulfield, T.R., Tan, R.-Z., Harvey, S.C.
PDB entry 4v66: Structure of the E. coli ribosome and the tRNAs in Post-accommodation state
Classification: RIBOSOME
Source organism: Escherichia coli; Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2008-08-03
Authors: Devkota, B., Caulfield, T.R., Tan, R.-Z., Harvey, S.C.
PDB entry 4v67: Crystal structure of a translation termination complex formed with release factor RF2.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2008-10-27
Authors: Korostelev, A., Asahara, H., Lancaster, L., Laurberg, M., Hirschi, A., Noller, H.F.
PDB entry 4v68: T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
Classification: RIBOSOME
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2008-12-11
Authors: Schuette, J.-C., Spahn, C.M.T.
PDB entry 4v69: Ternary complex-bound E.coli 70S ribosome.
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.7 Å
Deposited: 2008-12-11
Authors: Villa, E., Sengupta, J., Trabuco, L.G., LeBarron, J., Baxter, W.T., Shaikh, T.R., Grassucci, R.A., Nissen, P., Ehrenberg, M., Schulten, K., Frank, J.
PDB entry 4v6a: Structure of EF-P bound to the 70S ribosome.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-06-15
Authors: Stanley, R.E., Blaha, G.
PDB entry 4v6b: Crystal structure of human ferritin Phe167SerfsX26 mutant.
Classification: IRON STORAGE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2009-06-19
Authors: Hurley, T.D., Vidal, R.
PDB entry 4v6c: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2009-06-27
Authors: Zhang, W., Dunkle, J.A., Cate, J.H.D.
PDB entry 4v6d: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.814 Å
Deposited: 2009-06-27
Authors: Zhang, W., Dunkle, J.A., Cate, J.H.D.
PDB entry 4v6e: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.712 Å
Deposited: 2009-06-28
Authors: Zhang, W., Dunkle, J.A., Cate, J.H.D.
PDB entry 4v6f: Elongation complex of the 70S ribosome with three tRNAs and mRNA.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-07-09
Authors: Jenner, L.B., Yusupova, G., Yusupov, M.
PDB entry 4v6g: Initiation complex of 70S ribosome with two tRNAs and mRNA.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2009-07-10
Authors: Jenner, L.B., Yusupova, G., Yusupov, M.
PDB entry 4v6h: Crystal structure of succinate-semialdehyde dehydrogenase from Burkholderia pseudomallei
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-07-24
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 4v6i: Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.8 Å
Deposited: 2010-10-12
Authors: Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
PDB entry 4v6k: Structural insights into cognate vs. near-cognate discrimination during decoding.
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli DH1; Escherichia coli K-12; Escherichia coli O157:H7
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.25 Å
Deposited: 2011-01-07
Authors: Agirrezabala, X., Schreiner, E., Trabuco, L.G., Lei, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
PDB entry 4v6l: Structural insights into cognate vs. near-cognate discrimination during decoding.
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli DH1; Escherichia coli K-12; Escherichia coli O157:H7
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.2 Å
Deposited: 2011-01-07
Authors: Agirrezabala, X., Schreiner, E., Trabuco, L.G., Lei, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
PDB entry 4v6m: Structure of the ribosome-SecYE complex in the membrane environment
Classification: RIBOSOME/RIBOSOMAL PROTEIN
Source organism: Escherichia coli; Escherichia coli 536; Escherichia coli DH1; Escherichia coli K-12; Escherichia coli O157:H7; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2011-02-08
Authors: Frauenfeld, J., Gumbart, J., van der Sluis, E.O., Funes, S., Gartmann, M., Beatrix, B., Mielke, T., Berninghausen, O., Becker, T., Schulten, K., Beckmann, R.
PDB entry 4v6n: Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Classification: RIBOSOME
Source organism: Escherichia coli; Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.1 Å
Deposited: 2011-12-07
Authors: Agirrezabala, X., Liao, H., Schreiner, E., Fu, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
PDB entry 4v6o: Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Classification: RIBOSOME
Source organism: Escherichia coli; Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 14.7 Å
Deposited: 2011-12-07
Authors: Agirrezabala, X., Liao, H., Schreiner, E., Fu, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
PDB entry 4v6p: Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Classification: RIBOSOME
Source organism: Escherichia coli; Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.5 Å
Deposited: 2011-12-08
Authors: Agirrezabala, X., Liao, H., Schreiner, E., Fu, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
PDB entry 4v6q: Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Classification: RIBOSOME
Source organism: Escherichia coli; Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.5 Å
Deposited: 2011-12-08
Authors: Agirrezabala, X., Liao, H., Schreiner, E., Fu, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
PDB entry 4v6r: Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Classification: RIBOSOME
Source organism: Escherichia coli; Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.5 Å
Deposited: 2011-12-08
Authors: Agirrezabala, X., Liao, H., Schreiner, E., Fu, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
PDB entry 4v6s: Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
Classification: RIBOSOME
Source organism: Escherichia coli; Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.1 Å
Deposited: 2011-12-09
Authors: Agirrezabala, X., Liao, H., Schreiner, E., Fu, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
PDB entry 4v6t: Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.3 Å
Deposited: 2012-01-27
Authors: Ramrath, D.J.F., Yamamoto, H., Rother, K., Wittek, D., Pech, M., Mielke, T., Loerke, J., Scheerer, P., Ivanov, P., Teraoka, Y., Shpanchenko, O., Nierhaus, K.H., Spahn, C.M.T.
PDB entry 4v6u: Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes
Classification: RIBOSOME
Source organism: Pyrococcus furiosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2012-08-09
Authors: Armache, J.-P., Anger, A.M., Marquez, V., Frankenberg, S., Froehlich, T., Villa, E., Berninghausen, O., Thomm, M., Arnold, G.J., Beckmann, R., Wilson, D.N.
PDB entry 4v6v: Tetracycline resistance protein Tet(O) bound to the ribosome
Classification: RIBOSOME
Source organism: Campylobacter jejuni; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.8 Å
Deposited: 2013-02-25
Authors: Li, W., Atkinson, G.C., Thakor, N.S., Allas, U., Lu, C., Chan, K.Y., Tenson, T., Schulten, K., Wilson, K.S., Hauryliuk, V., Frank, J.
PDB entry 4v6w: Structure of the D. melanogaster 80S ribosome
Classification: RIBOSOME
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2013-02-27
Authors: Anger, A.M., Armache, J.-P., Berninghausen, O., Habeck, M., Subklewe, M., Wilson, D.N., Beckmann, R.
PDB entry 4v6x: Structure of the human 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2013-02-27
Authors: Anger, A.M., Armache, J.-P., Berninghausen, O., Habeck, M., Subklewe, M., Wilson, D.N., Beckmann, R.
PDB entry 4v6y: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v6z: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v70: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 17 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v71: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v72: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 13 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v73: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v74: 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 17 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v75: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v76: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 17 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v77: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 17 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v78: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v79: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v7a: E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2013-10-14
Authors: Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.
PDB entry 4v7b: Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Classification: RIBOSOME/TRANSLATION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2013-10-27
Authors: Ramrath, D.J.F., Lancaster, L., Sprink, T., Mielke, T., Loerke, J., Noller, H.F., Spahn, C.M.T.
PDB entry 4v7c: Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)
Classification: TRANSLATION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2013-11-20
Authors: Brilot, A.F., Korostelev, A.A., Ermolenko, D.N., Grigorieff, N.
PDB entry 4v7d: Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)
Classification: TRANSLATION/antibiotic
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2013-11-21
Authors: Brilot, A.F., Korostelev, A.A., Ermolenko, D.N., Grigorieff, N.
PDB entry 4v7e: Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Classification: RIBOSOME
Source organism: Triticum aestivum
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2013-11-22
Authors: Barrio-Garcia, C., Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
PDB entry 4v7f: Arx1 pre-60S particle.
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.7 Å
Deposited: 2013-12-10
Authors: Leidig, C., Thoms, M., Holdermann, I., Bradatsch, B., Berninghausen, O., Bange, G., Sinning, I., Hurt, E., Beckmann, R.
PDB entry 4v7g: Crystal Structure of Lumazine Synthase from Bacillus Anthracis
Classification: TRANSFERASE
Source organism: Bacillus Anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2009-09-16
Authors: Morgunova, E., Illarionov, B., Saller, S., Popov, A., Sambaiah, T., Bacher, A., Cushman, M., Fischer, M., Ladenstein, R.
PDB entry 4v7h: Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
Classification: RIBOSOME
Source organism: Thermomyces lanuginosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.9 Å
Deposited: 2009-09-22
Authors: Taylor, D.J., Devkota, B., Huang, A.D., Topf, M., Narayanan, E., Sali, A., Harvey, S.C., Frank, J.
PDB entry 4v7i: Ribosome-SecY complex.
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12; Methanocaldococcus jannaschii
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.6 Å
Deposited: 2009-10-21
Authors: Gumbart, J.C., Trabuco, L.G., Schreiner, E., Villa, E., Schulten, K.
PDB entry 4v7j: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
Classification: RIBOSOME
Source organism: Escherichia coli K-12; Thermus thermophilus; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2009-11-02
Authors: Neubauer, C., Gao, Y.-G., Andersen, K.R., Dunham, C.M., Kelley, A.C., Hentschel, J., Gerdes, K., Ramakrishnan, V., Brodersen, D.E.
PDB entry 4v7k: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Classification: RIBOSOME
Source organism: Escherichia coli K-12; Thermus thermophilus; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2009-11-02
Authors: Neubauer, C., Gao, Y.-G., Andersen, K.R., Dunham, C.M., Kelley, A.C., Hentschel, J., Gerdes, K., Ramakrishnan, V., Brodersen, D.E.
PDB entry 4v7l: The structures of viomycin bound to the 70S ribosome.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli; Streptomyces puniceus; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2009-11-12
Authors: Stanley, R.E., Blaha, G.
PDB entry 4v7m: The structures of Capreomycin bound to the 70S ribosome.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli; Pectobacterium wasabiae WPP163; Streptomyces puniceus; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2009-11-12
Authors: Stanley, R.E., Blaha, G.
PDB entry 4v7n: Glycocyamine kinase, beta-beta homodimer from marine worm Namalycastis sp., with transition state analog Mg(II)-ADP-NO3-glycocyamine.
Classification: TRANSFERASE
Source organism: Namalycastis sp. ST01
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-12-15
Authors: Lim, K., Pullalarevu, S., Herzberg, O.
PDB entry 4v7o: Proteasome Activator Complex
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.005 Å
Deposited: 2009-12-22
Authors: Hill, C.P., Whitby, F.G.
PDB entry 4v7p: Recognition of the amber stop codon by release factor RF1.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2010-04-29
Authors: Korostelev, A., Zhu, J., Asahara, H., Noller, H.F.
PDB entry 4v7q: Atomic model of an infectious rotavirus particle
Classification: VIRUS
Source organism: Rhesus rotavirus; Simian rotavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2010-05-13
Authors: Settembre, E.C., Chen, J.Z., Dormitzer, P.R., Grigorieff, N., Harrison, S.C.
PDB entry 4v7r: Yeast 80S ribosome.
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2010-07-23
Authors: Ben-Shem, A., Jenner, L., Yusupova, G., Yusupov, M.
PDB entry 4v7s: Crystal structure of the E. coli ribosome bound to telithromycin.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2547 Å
Deposited: 2010-08-05
Authors: Dunkle, J.A., Xiong, L., Mankin, A.S., Cate, J.H.D.
PDB entry 4v7t: Crystal structure of the E. coli ribosome bound to chloramphenicol.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1942 Å
Deposited: 2010-08-14
Authors: Dunkle, J.A., Xiong, L., Mankin, A.S., Cate, J.H.D.
PDB entry 4v7u: Crystal structure of the E. coli ribosome bound to erythromycin.
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-08-15
Authors: Dunkle, J.A., Xiong, L., Mankin, A.S., Cate, J.H.D.
PDB entry 4v7v: Crystal structure of the E. coli ribosome bound to clindamycin.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2891 Å
Deposited: 2010-08-16
Authors: Dunkle, J.A., Xiong, L., Mankin, A.S., Cate, J.H.D.
PDB entry 4v7w: Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-08-16
Authors: Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.
PDB entry 4v7x: Structure of the Thermus thermophilus ribosome complexed with erythromycin.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-08-17
Authors: Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.
PDB entry 4v7y: Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-08-18
Authors: Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.
PDB entry 4v7z: Structure of the Thermus thermophilus 70S ribosome complexed with telithromycin.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-08-18
Authors: Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.
PDB entry 4v81: The crystal structure of yeast CCT reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2010-10-17
Authors: Dekker, C., Roe, S.M., McCormack, E.A., Beuron, F., Pearl, L.H., Willison, K.R.
PDB entry 4v82: Crystal structure of cyanobacterial Photosystem II in complex with terbutryn
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2010-11-30
Authors: Gabdulkhakov, A., Broser, M., Guskov, A., Kern, J., Glockner, C., Muh, F., Saenger, W., Zouni, A.
PDB entry 4v83: Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.
Classification: RIBOSOME
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2010-12-13
Authors: Zhu, J., Korostelev, A., Costantino, D., Noller, H.F., Kieft, J.S.
PDB entry 4v84: Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
Classification: RIBOSOME
Source organism: Thermus thermophilus; Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039); Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2010-12-13
Authors: Zhu, J., Korostelev, A., Costantino, D., Noller, H.F., Kieft, J.S.
PDB entry 4v85: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2011-06-13
Authors: Zhou, J., Lancaster, L., Trakhanov, S., Noller, H.F.
PDB entry 4v86: Structure-function Analysis of Receptor-binding in Adeno-Associated Virus Serotype 6 (AAV-6)
Classification: VIRUS
Source organism: Adeno-associated virus - 6
Experimental method: X-RAY DIFFRACTION
Resolution: 3.003 Å
Deposited: 2011-09-13
Authors: Xie, Q.
PDB entry 4v87: Crystal structure analysis of ribosomal decoding.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2011-09-20
Authors: Demeshkina, N., Jenner, L., Yusupov, M., Yusupova, G.
PDB entry 4v88: The structure of the eukaryotic ribosome at 3.0 A resolution.
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-10-11
Authors: Ben-Shem, A., Garreau de Loubresse, N., Melnikov, S., Jenner, L., Yusupova, G., Yusupov, M.
PDB entry 4v89: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2011-11-17
Authors: Zhou, J., Lancaster, L., Trakhanov, S., Noller, H.F.
PDB entry 4v8a: The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Classification: RIBOSOME/antibiotic
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2011-12-05
Authors: Bulkley, D., Johnson, F.A., Steitz, T.A.
PDB entry 4v8b: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-12-06
Authors: Jenner, L., Demeshkina, N., Yusupov, M., Yusupova, G.
PDB entry 4v8c: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2011-12-07
Authors: Jenner, L., Demeshkina, N., Yusupov, M., Yusupova, G.
PDB entry 4v8d: Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-12-07
Authors: Jenner, L., Demeshkina, N., Yusupov, M., Yusupova, G.
PDB entry 4v8e: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2011-12-07
Authors: Jenner, L., Demeshkina, N., Yusupov, M., Yusupova, G.
PDB entry 4v8f: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2011-12-07
Authors: Jenner, L., Demeshkina, N., Yusupov, M., Yusupova, G.
PDB entry 4v8g: Crystal structure of RMF bound to the 70S ribosome.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2011-12-11
Authors: Polikanov, Y.S., Blaha, G.M., Steitz, T.A.
PDB entry 4v8h: Crystal structure of HPF bound to the 70S ribosome.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2011-12-11
Authors: Polikanov, Y.S., Blaha, G.M., Steitz, T.A.
PDB entry 4v8i: Crystal structure of YfiA bound to the 70S ribosome.
Classification: Ribosome/Inhibitor
Source organism: Escherichia coli K-12; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2011-12-12
Authors: Polikanov, Y.S., Blaha, G.M., Steitz, T.A.
PDB entry 4v8j: Crystal structure of the bacterial ribosome ram mutation G347U.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2011-12-20
Authors: Fagan, C.E., Dunkle, J.A., Maehigashi, T., Dunham, C.M.
PDB entry 4v8k: Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form
Classification: PHOTOSYNTHESIS
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.006 Å
Deposited: 2013-11-22
Authors: Niwa, S., Takeda, K., Wang-Otomo, Z.-Y., Miki, K.
PDB entry 4v8l: Cryo-EM Structure of the Mycobacterial Fatty Acid Synthase
Classification: TRANSFERASE
Source organism: MYCOBACTERIUM SMEGMATIS
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.5 Å
Deposited: 2012-12-06
Authors: Boehringer, D., Ban, N., Leibundgut, M.
PDB entry 4v8m: High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Classification: RIBOSOME
Source organism: TRYPANOSOMA BRUCEI; TRYPANOSOMA BRUCEI BRUCEI
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.57 Å
Deposited: 2012-12-09
Authors: Hashem, Y., des Georges, A., Fu, J., Buss, S.N., Jossinet, F., Jobe, A., Zhang, Q., Liao, H.Y., Grassucci, R.A., Bajaj, C., Westhof, E., Madison-Antenucci, S., Frank, J.
PDB entry 4v8n: The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
Classification: RIBOSOME
Source organism: HALOARCULA MARISMORTUI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2013-02-13
Authors: Voorhees, R.M., Mandal, D., Neubauer, C., Koehrer, C., RajBhandary, U.L., Ramakrishnan, V.
PDB entry 4v8o: Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2011-07-26
Authors: Jin, H., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v8p: T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Classification: RIBOSOME
Source organism: TETRAHYMENA THERMOPHILA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2011-09-14
Authors: Klinge, S., Voigts-Hoffmann, F., Leibundgut, M., Arpagaus, S., Ban, N.
PDB entry 4v8q: Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli K-12; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2011-12-10
Authors: Neubauer, C., Gillet, R., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v8r: The crystal structures of the eukaryotic chaperonin CCT reveal its functional partitioning
Classification: CHAPERONE
Source organism: SACCHAROMYCES CEREVISIAE
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2012-03-28
Authors: Kalisman, N., Schroder, G.F., Levitt, M.
PDB entry 4v8s: Archaeal RNAP-DNA binary complex at 4.32Ang
Classification: TRANSFERASE/DNA
Source organism: SULFOLOBUS SHIBATAE B12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.323 Å
Deposited: 2012-07-12
Authors: Wojtas, M.N., Mogni, M., Millet, O., Bell, S.D., Abrescia, N.G.A.
PDB entry 4v8t: Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
Classification: RIBOSOME
Source organism: SACCHAROMYCES CEREVISIAE; Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.1 Å
Deposited: 2012-08-07
Authors: Greber, B.J., Boehringer, D., Montellese, C., Ban, N.
PDB entry 4v8u: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.
Classification: RIBOSOME
Source organism: THERMUS THERMOPHILUS HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2012-08-28
Authors: Gao, Y.G., Feng, S., Chen, Y.
PDB entry 4v8v: Structure and conformational variability of the Mycobacterium tuberculosis fatty acid synthase multienzyme complex
Classification: HYDROLASE
Source organism: MYCOBACTERIUM TUBERCULOSIS
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2013-04-18
Authors: Ciccarelli, L., Connell, S.R., Enderle, M., Mills, D.J., Vonck, J., Grininger, M.
PDB entry 4v8w: Structure and conformational variability of the Mycobacterium tuberculosis fatty acid synthase multienzyme complex
Classification: HYDROLASE
Source organism: MYCOBACTERIUM TUBERCULOSIS
Experimental method: ELECTRON MICROSCOPY
Resolution: 17.5 Å
Deposited: 2013-04-18
Authors: Ciccarelli, L., Connell, S.R., Enderle, M., Mills, D.J., Vonck, J., Grininger, M.
PDB entry 4v8x: Structure of Thermus thermophilus ribosome
Classification: RIBOSOME
Source organism: ESCHERICHIA COLI; THERMUS THERMOPHILUS; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2013-07-19
Authors: Feng, S., Chen, Y., Kamada, K., Wang, H., Tang, K., Wang, M., Gao, Y.G.
PDB entry 4v8y: Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
Classification: RIBOSOME
Source organism: SACCHAROMYCES CEREVISIAE; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2013-07-20
Authors: Fernandez, I.S., Bai, X.C., Hussain, T., Kelley, A.C., Lorsch, J.R., Ramakrishnan, V., Scheres, S.H.W.
PDB entry 4v8z: Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
Classification: RIBOSOME
Source organism: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SACCHAROMYCES CEREVISIAE
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2013-07-20
Authors: Fernandez, I.S., Bai, X.C., Hussain, T., Kelley, A.C., Lorsch, J.R., Ramakrishnan, V., Scheres, S.H.W.
PDB entry 4v90: Thermus thermophilus Ribosome
Classification: RIBOSOME
Source organism: THERMUS THERMOPHILUS HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2014-02-22
Authors: Chen, Y., Feng, S., Kumar, V., Ero, R., Gao, Y.G.
PDB entry 4v91: Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Classification: RIBOSOME
Source organism: KLUYVEROMYCES LACTIS
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2014-03-21
Authors: Fernandez, I.S., Bai, X., Scheres, S.H.W., Ramakrishnan, V.
PDB entry 4v92: Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Classification: RIBOSOME
Source organism: CRICKET PARALYSIS VIRUS; KLUYVEROMYCES LACTIS
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2014-03-21
Authors: Fernandez, I.S., Bai, X., Scheres, S.H.W., Ramakrishnan, V.
PDB entry 4v93: Fitted coordinates for Lumbricus terrestris hemoglobin cryo-EM complex (EMD-2627)
Classification: TRANSPORT PROTEIN
Source organism: LUMBRICUS TERRESTRIS
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.1 Å
Deposited: 2014-04-16
Authors: Chen, W.T., Chen, Y.C., Liou, H.H., Chao, C.Y.
PDB entry 4v94: Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2012-01-11
Authors: Leitner, A., Joachimiak, L.A., Bracher, A., Walzthoeni, T., Chen, B., Monkemeyer, L., Pechmann, S., Holmes, S., Cong, Y., Ma, B., Ludtke, S., Chiu, W., Hartl, F.U., Aebersold, R., Frydman, J.
PDB entry 4v95: Crystal structure of YAEJ bound to the 70S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli K-12; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2012-01-27
Authors: Gagnon, M.G., Seetharaman, S.V., Bulkley, D.P., Steitz, T.A.
PDB entry 4v96: The structure of a 1.8 MDa viral genome injection device suggests alternative infection mechanisms
Classification: VIRAL PROTEIN
Source organism: Lactococcus phage TP901-1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2012-02-01
Authors: Veesler, D., Spinelli, S., Mahony, J., Lichiere, J., Blangy, S., Bricogne, G., Legrand, P., Ortiz-Lombardia, M., Campanacci, V., van Sinderen, D., Cambillau, C.
PDB entry 4v97: Crystal structure of the bacterial ribosome ram mutation G299A.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.516 Å
Deposited: 2012-04-06
Authors: Fagan, C.E., Dunkle, J.A., Maehigashi, T., Dunham, C.M.
PDB entry 4v98: The 8S snRNP Assembly Intermediate
Classification: SPLICING
Source organism: Drosophila melanogaster; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2012-05-15
Authors: Grimm, C., Pelz, J.P., Schindelin, H., Diederichs, K., Kuper, J., Kisker, C.
PDB entry 4v99: The Crystallographic Structure of Panicum Mosaic Virus
Classification: VIRUS/RNA
Source organism: Panicum mosaic virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2012-07-04
Authors: Makino, D.L., Larson, S.B., McPherson, A.
PDB entry 4v9a: Crystal Structure of the 70S ribosome with tetracycline.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2999 Å
Deposited: 2012-07-18
Authors: Jenner, L., Yusupov, M., Yusupova, G.
PDB entry 4v9b: Crystal Structure of the 70S ribosome with tigecycline.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2012-07-18
Authors: Jenner, L., Yusupov, M., Yusupova, G.
PDB entry 4v9c: Allosteric control of the ribosome by small-molecule antibiotics
Classification: Ribosome/Antibiotic
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2012-07-25
Authors: Cate, J.H.D., Pulk, A., Blanchard, S.C., Wang, L., Feldman, M.B., Wasserman, M.R., Altman, R.
PDB entry 4v9d: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2012-07-31
Authors: Dunkle, J.A., Wang, L., Feldman, M.B., Pulk, A., Chen, V.B., Kapral, G.J., Noeske, J., Richardson, J.S., Blanchard, S.C., Cate, J.H.D.
PDB entry 4v9e: Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded RNA.
Classification: VIRAL PROTEIN/RNA
Source organism: Rift Valley fever virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2012-09-19
Authors: Raymond, D.D., Smith, J.L.
PDB entry 4v9f: The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Classification: RIBOSOME
Source organism: Haloarcula marismortui
Experimental method: X-RAY DIFFRACTION
Resolution: 2.404 Å
Deposited: 2012-11-02
Authors: Gabdulkhakov, A.
PDB entry 4v9g: RC-LH1-PufX dimer complex from Rhodobacter sphaeroides
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 7.78 Å
Deposited: 2013-02-21
Authors: Qian, P., Papiz, M.Z., Jackson, P.J., Brindley, A.A., Ng, I.W., Olsen, J.D., Dickman, M.J., Bullough, P.A., Hunter, C.N.
PDB entry 4v9h: Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.857 Å
Deposited: 2013-03-25
Authors: Tourigny, D.S., Fernandez, I.S., Kelley, A.C., Ramakrishnan, V.
PDB entry 4v9i: Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2013-04-04
Authors: Fernandez, I.S., Ng, C.L., Kelley, A.C., Guowei, W., Yu, Y.T., Ramakrishnan, V.
PDB entry 4v9j: 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli; Streptomyces; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.86 Å
Deposited: 2013-04-23
Authors: Zhou, J., Lancaster, L., Donohue, J.P., Noller, H.F.
PDB entry 4v9k: 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli; Streptomyces; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2013-04-24
Authors: Zhou, J., Lancaster, L., Donohue, J.P., Noller, H.F.
PDB entry 4v9l: 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli; Streptomyces; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2013-04-24
Authors: Zhou, J., Lancaster, L., Donohue, J.P., Noller, H.F.
PDB entry 4v9m: 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2013-04-25
Authors: Zhou, J., Lancaster, L., Donohue, J.P., Noller, H.F.
PDB entry 4v9n: Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
Classification: RIBOSOME
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2013-04-26
Authors: Santos, N., Zhu, J., Donohue, J.P., Korostelev, A.A., Noller, H.F.