LiteFold/PDB huggingface dataset:
PDB entry 5xyg: Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72.
Classification: HYDROLASE
Source organism: Arthrobacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-07-07
Authors: Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
PDB entry 5xyh: Crystal Structure of catalytic domain of 1,4-beta-Cellobiosidase (CbsA) from Xanthomonas oryzae pv. oryzae
Classification: HYDROLASE
Source organism: Xanthomonas oryzae pv. oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.864 Å
Deposited: 2017-07-07
Authors: Kumar, S., Haque, A.S., Nathawat, R., Sankaranaryanan, R.
PDB entry 5xyi: Small subunit of Trichomonas vaginalis ribosome
Classification: RIBOSOME
Source organism: Trichomonas vaginalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2017-07-08
Authors: Li, Z., Guo, Q., Zheng, L., Ji, Y., Xie, Y., Lai, D., Lun, Z., Suo, X., Gao, N.
PDB entry 5xyj: Purification,crystallization and structural analysis of cytoplastic acetoacetyl-CoA thiolase from Saccharomyces cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2017-07-08
Authors: Zhou, P.F.
PDB entry 5xyk: Structure of Transferase
Classification: TRANSFERASE
Source organism: Salmonella typhimurium (strain 4/74)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2017-07-09
Authors: Park, J.B., Yoo, Y., Kim, J., Cho, H.S.
PDB entry 5xyl: Solution Structure of Skp1 from Homo sapiens
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-07-09
Authors: Shukla, V.K., Kachariya, N.N., Bhattacharya, A., Dantu, S.C., Kumar, A.
PDB entry 5xym: Large subunit of Mycobacterium smegmatis
Classification: RIBOSOME
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2017-07-09
Authors: Li, Z., Ge, X., Zhang, Y., Zheng, L., Sanyal, S., Gao, N.
PDB entry 5xyn: The crystal structure of Csm2-Psy3-Shu1-Shu2 complex from budding yeast
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2017-07-09
Authors: Zhang, S., Zhang, T., Ding, J.
PDB entry 5xyo: Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122G mutant
Classification: HYDROLASE
Source organism: Flavobacterium sp. KI723T1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-07-10
Authors: Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
PDB entry 5xyp: Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122R mutant
Classification: HYDROLASE
Source organism: Flavobacterium sp. KI723T1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2017-07-10
Authors: Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
PDB entry 5xyq: Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122K mutant
Classification: HYDROLASE
Source organism: Flavobacterium sp. KI723T1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2017-07-10
Authors: Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
PDB entry 5xyr: Crystal structure of a serine protease from Streptococcus species
Classification: LYASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-07-10
Authors: Jobichen, C., Sivaraman, J.
PDB entry 5xys: Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122V mutant
Classification: HYDROLASE
Source organism: Flavobacterium sp. KI723T1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2017-07-10
Authors: Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
PDB entry 5xyt: Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., H130Y mutant
Classification: HYDROLASE
Source organism: Flavobacterium sp. KI723T1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-07-10
Authors: Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
PDB entry 5xyu: Small subunit of Mycobacterium smegmatis ribosome
Classification: RIBOSOME
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2017-07-10
Authors: Li, Z., Zhang, Y., Zheng, L., Ge, X., Sanyal, S., Gao, N.
PDB entry 5xyv: Crystal structure of drosophila melanogaster Rhino chromoshadow domain in complex with Deadlock N-terminal domain
Classification: PROTEIN BINDING
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-07-10
Authors: Yu, B.W., Huang, Y.
PDB entry 5xyw: Crystal structure of drosophila simulans Rhino chromoshadow domain in complex with N-terminal domain
Classification: PROTEIN BINDING
Source organism: Drosophila simulans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.705 Å
Deposited: 2017-07-10
Authors: Yu, B.W., Huang, Y.
PDB entry 5xyx: The structure of p38 alpha in complex with a triazol inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2017-07-11
Authors: Wang, Y.L., Sun, Y.Z., Cao, R., Liu, D., Li, L., Qi, X.B., Huang, N.
PDB entry 5xyy: The structure of p38 alpha in complex with a triazol inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-07-11
Authors: Wang, Y.L., Sun, Y.Z., Cao, R., Liu, D., Li, L., Qi, X.B., Huang, N.
PDB entry 5xyz: The structure of human BTK kinase domain in complex with a covalent inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2017-07-11
Authors: Wang, Y.L., Sun, Y.Z., Cao, R., Liu, D., Xie, Y.T., Li, L., Qi, X.B., Huang, N.
PDB entry 5xz0: Staphylococcal Enterotoxin B (SEB) mutant S19 - N23A, Y90A, R110A and F177A
Classification: TOXIN
Source organism: Staphylococcus aureus (strain COL)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.002 Å
Deposited: 2017-07-11
Authors: Jeong, W.H., Song, D.H., Hur, G.H., Jeong, S.T.
PDB entry 5xz1: Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.008 Å
Deposited: 2017-07-11
Authors: Kanazawa, H., Tsurumi, N., Kondo, J.
PDB entry 5xz2: Crystal structure of adenylate kinase
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-07-11
Authors: Moon, S., Bae, E., Kim, J.
PDB entry 5xz3: The X-ray structure of Apis mellifera PGRP-SA
Classification: IMMUNE SYSTEM
Source organism: Apis mellifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2017-07-11
Authors: Liu, Y.J., Huang, J.X., Zhao, X.M., An, J.D.
PDB entry 5xz4: The X-tay structure of Bumblebee PGRP-SA
Classification: IMMUNE SYSTEM
Source organism: Bombus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2017-07-11
Authors: Liu, Y.J., Huang, J.X., Zhao, X.M., An, J.D.
PDB entry 5xz5: Purification,crystallization and structural analysis of cytoplastic acetoacetyl-CoA thiolase from Saccharomyces cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-07-11
Authors: Zhou, P.F., Zhu, Z.L.
PDB entry 5xz6: Crystal Structure of Phosphofructokinase from Staphylococcus aureus in complex with adenylylimidodiphosphate, the ATP analogue
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain NCTC 8325)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-07-11
Authors: Wang, C.L., Tian, T., Zang, J.Y.
PDB entry 5xz7: Crystal Structure of Phosphofructokinase from Staphylococcus aureus in complex with adenylylimidodiphosphate, the ATP analogue
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain NCTC 8325)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-07-11
Authors: Wang, C.L., Tian, T., Zang, J.Y.
PDB entry 5xz8: Crystal Structure of Phosphofructokinase from Staphylococcus aureus in complex with adenylylimidodiphosphate (the ATP analog) and fructose-6-phosphate
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain NCTC 8325)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2017-07-11
Authors: Wang, C.L., Tian, T., Zang, J.Y.
PDB entry 5xz9: Crystal Structure of Phosphofructokinase from Staphylococcus aureus in complex with adenylylimidodiphosphate, the ATP analogue
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain NCTC 8325)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-07-12
Authors: Wang, C.L., Tian, T., Zang, J.Y.
PDB entry 5xza: Crystal Structure of Phosphofructokinase from Staphylococcus aureus in complex with ADP
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain NCTC 8325)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-07-12
Authors: Wang, C.L., Tian, T., Zang, J.Y.
PDB entry 5xzb: Mouse cGAS bound to the inhibitor RU365
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2017-07-12
Authors: Vincent, J., Adura, C., Gao, P., Luz, A., Lama, L., Asano, Y., Okamoto, R., Imaeda, T., Aida, J., Rothamel, K., Gogakos, T., Steinberg, J., Reasoner, S., Aso, K., Tuschl, T., Patel, D.J., Glickman, J.F., Ascano, M.
PDB entry 5xzc: Cryo-EM structure of p300-p53 protein complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.7 Å
Deposited: 2017-07-12
Authors: Ghosh, R., Roy, S., Sengupta, J.
PDB entry 5xzd: Structure of acryloyl-CoA hydratase AcuH from Roseovarius nubinhibens ISM
Classification: LYASE
Source organism: Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-07-12
Authors: Zhang, Y.Z., Wang, P., Cao, H.Y.
PDB entry 5xze: Mouse cGAS bound to the inhibitor RU332
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.177 Å
Deposited: 2017-07-12
Authors: Vincent, J., Adura, C., Gao, P., Luz, A., Lama, L., Asano, Y., Okamoto, R., Imaeda, T., Aida, J., Rothamel, K., Gogakos, T., Steinberg, J., Reasoner, S., Aso, K., Tuschl, T., Patel, D.J., Glickman, J.F., Ascano, M.
PDB entry 5xzf: Vitamin D receptor with a synthetic ligand ADRO1
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-07-12
Authors: Otero, R., Numoto, N., Ikura, T., Yamada, S., Mourino, A., Makishima, M., Ito, N.
PDB entry 5xzg: Mouse cGAS bound to the inhibitor RU521
Classification: IMMUNE SYSTEM/INHIBITOR
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.828 Å
Deposited: 2017-07-12
Authors: Vincent, J., Adura, C., Gao, P., Luz, A., Lama, L., Asano, Y., Okamoto, R., Imaeda, T., Aida, J., Rothamel, K., Gogakos, T., Steinberg, J., Reasoner, S., Aso, K., Tuschl, T., Patel, D.J., Glickman, J.F., Ascano, M.
PDB entry 5xzh: Vitamin D receptor with a synthetic ligand ADRO2
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-07-12
Authors: Otero, R., Numoto, N., Ikura, T., Yamada, S., Mourino, A., Makishima, M., Ito, N.
PDB entry 5xzi: Crystal structure of the Zn-directed tetramer of the engineered cyt cb562 variant, AB5
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2017-07-12
Authors: Song, W.J., Tezcan, F.A.
PDB entry 5xzj: Crystal structure of the Zn-directed tetramer of the engineered cyt cb562 variant, C96T/AB5
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2017-07-12
Authors: Song, W.J., Tezcan, F.A.
PDB entry 5xzk: Pholiota squarrosa lectin trimer
Classification: SUGAR BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2017-07-12
Authors: Yamasaki, K.
PDB entry 5xzm: CATPO mutant - V228I
Classification: OXIDOREDUCTASE
Source organism: Mycothermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2017-07-12
Authors: Yuzugullu Karakus, Y., Balci, S., Goc, G., Pearson, A.R., Yorke, B.
PDB entry 5xzn: CATPO mutant - V228C
Classification: OXIDOREDUCTASE
Source organism: Mycothermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2017-07-13
Authors: Yuzugullu Karakus, Y., Balci, S., Goc, G., Pearson, A.R., Yorke, B.
PDB entry 5xzo: Crystal structure of GH10 xylanase XYL10C from Bispora. sp MEY-1
Classification: HYDROLASE
Source organism: Bispora sp. MEY-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-07-13
Authors: You, S., Chen, C., Tu, T., Guo, R.T., Luo, H., Yao, B.
PDB entry 5xzq: Hydroxynitrile lyase from Passiflora edulis (PeHNL)
Classification: LYASE
Source organism: Passiflora edulis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-07-13
Authors: Motojima, F., Nuylert, A., Asano, Y.
PDB entry 5xzr: The atomic structure of SHP2 E76A mutant in complex with allosteric inhibitor 9b
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-07-13
Authors: Li, D., Xie, J., Zhu, J., Liu, C.
PDB entry 5xzt: C-terminal peptide depleted mutant of hydroxynitrile lyase from Passiflora edulis (PeHNL)
Classification: LYASE
Source organism: Passiflora edulis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-07-13
Authors: Motojima, F., Nuylert, A., Asano, Y.
PDB entry 5xzu: Crystal structure of GH10 xylanase from Bispora. sp MEY-1 with xylobiose
Classification: HYDROLASE
Source organism: Bispora sp. MEY-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-07-14
Authors: You, S., Chen, C.C., Tu, T., Guo, R.T., Luo, H.Y., Yao, B.
PDB entry 5xzv: Crystal structure of Rad53 1-466 in complex with AMP-PNP
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2017-07-14
Authors: Weng, J.H., Tsai, M.D.
PDB entry 5xzw: Crystal structure of Rad53 1-466
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-07-14
Authors: Weng, J.H., Tsai, M.D.
PDB entry 5xzx: Crystal structure of importin-alpha3 bound to the nuclear localization signal of Ran-binding protein 3
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-07-14
Authors: Koyama, M., Matsuura, Y.
PDB entry 5y00: Acid-tolerant monomeric GFP, Gamillus, fluorescence (ON) state
Classification: FLUORESCENT PROTEIN
Source organism: Olindias
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-07-14
Authors: Nakashima, R., Sakurai, K., Shinoda, H., Matsuda, T., Nagai, T.
PDB entry 5y01: Acid-tolerant monomeric GFP, Gamillus, non-fluorescence (OFF) state
Classification: FLUORESCENT PROTEIN
Source organism: Olindias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2017-07-14
Authors: Nakashima, R., Sakurai, K., Shinoda, H., Matsuda, T., Nagai, T.
PDB entry 5y02: C-terminal peptide depleted mutant of hydroxynitrile lyase from Passiflora edulis (PeHNL) bound with (R)-mandelonitrile
Classification: LYASE
Source organism: Passiflora edulis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-07-14
Authors: Motojima, F., Nuylert, A., Asano, Y.
PDB entry 5y03: Galectin-13/Placental Protein 13 variant R53H crystal structure
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2017-07-14
Authors: Wang, Y., Su, J.
PDB entry 5y04: Crystal Structure of the complex between the vinculin D1 domain and alphaE-catenin
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2017-07-14
Authors: Hirano, Y., Hakoshima, T.
PDB entry 5y05: Structural characterization of msmeg_4306 from Mycobacterium smegmatis
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.799 Å
Deposited: 2017-07-14
Authors: Kumar, A., Karthikeyan, S.
PDB entry 5y06: Structural characterization of msmeg_4306 from Mycobacterium smegmatis
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.606 Å
Deposited: 2017-07-14
Authors: Kumar, A., Karthikeyan, S.
PDB entry 5y07: Crystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis with PRPP.
Classification: TRANSFERASE
Source organism: Yersinia pseudotuberculosis IP 32953
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2017-07-25
Authors: Pavithra, G.C., Ramagopal, U.A.
PDB entry 5y08: Solution structure of the apo doublet acyl carrier protein from prodigiosin biosynthesis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Serratia sp. ATCC 39006
Experimental method: SOLUTION NMR
Deposited: 2017-07-15
Authors: Wattana-amorn, P.
PDB entry 5y09: Crystal structure of Deg9 at 295 K
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.449 Å
Deposited: 2017-07-15
Authors: Ouyang, M., Li, X.Y., Liu, L., Zhang, L.X.
PDB entry 5y0a: Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus (strain Mr 766)
Experimental method: ELECTRON MICROSCOPY
Resolution: 22 Å
Deposited: 2017-07-15
Authors: Wang, J.Q., Lok, S.M.
PDB entry 5y0b: PIG GASTRIC H+,K+ - ATPASE IN COMPLEX with BYK99
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 6.5 Å
Deposited: 2017-07-16
Authors: Abe, K., Shimokawa, J., Natio, M., Munson, K., Vagin, O., Sachs, G., Suzuki, H., Tani, K., Fujiyoshi, Y.
PDB entry 5y0c: Crystal Structure of the human nucleosome at 2.09 angstrom resolution
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.087 Å
Deposited: 2017-07-16
Authors: Kurumizaka, H., Arimura, Y., Fujita, R., Noda, M.
PDB entry 5y0d: Crystal Structure of the human nucleosome containing the H2B E76K mutant
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2017-07-16
Authors: Kurumizaka, H., Arimura, Y., Fujita, R., Noda, M.
PDB entry 5y0e: Crystal structure of TssK
Classification: STRUCTURAL PROTEIN
Source organism: Serratia sp. FS14
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-07-17
Authors: Tong, H., Xu, D., Ran, T., Wang, W.W.
PDB entry 5y0f: Crystal structure of human FABP4 complexed with ligand 2-fluoro-5-((4-methoxynaphthalene)-1-sulfonamido) benzoic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2017-07-17
Authors: Su, H.X., Liu, Q.F., Xu, Y.C.
PDB entry 5y0g: Crystal structure of human FABP4 complexed with ligand 4-Fluoro-3-((4-methoxynaphthalene)-1-sulfonamido) benzoic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.542 Å
Deposited: 2017-07-17
Authors: Su, H.X., Liu, Q.F., Xu, Y.C.
PDB entry 5y0h: Solution structure of arenicin-3 derivative N6
Classification: ANTIBIOTIC
Experimental method: SOLUTION NMR
Deposited: 2017-07-17
Authors: Liu, X.H., Wang, J.H.
PDB entry 5y0i: Solution structure of arenicin-3 derivative N1
Classification: ANTIBIOTIC
Experimental method: SOLUTION NMR
Deposited: 2017-07-17
Authors: Liu, X.H., Wang, J.H.
PDB entry 5y0j: Solution structure of arenicin-3 derivative N2
Classification: ANTIBIOTIC
Experimental method: SOLUTION NMR
Deposited: 2017-07-17
Authors: Liu, X.H., Wang, J.H.
PDB entry 5y0l: Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122G/H130Y mutant
Classification: HYDROLASE
Source organism: Flavobacterium sp. KI723T1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.385 Å
Deposited: 2017-07-18
Authors: Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
PDB entry 5y0m: Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D36A/D122G/H130Y/E263Q mutant
Classification: HYDROLASE
Source organism: Flavobacterium sp. KI723T1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2017-07-18
Authors: Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
PDB entry 5y0n: Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative)
Classification: LIGASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.302 Å
Deposited: 2017-07-18
Authors: Yamashita, S., Tomita, K.
PDB entry 5y0o: Crystal structure of apo BsTmcAL
Classification: LIGASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-07-18
Authors: Yamashita, S., Tomita, K.
PDB entry 5y0p: Crystal structure of Bacillus subtilis TmcAL bound with alpha-thio ATP
Classification: LIGASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-07-18
Authors: Yamashita, S., Tomita, K.
PDB entry 5y0q: Crystal structure of BsTmcAL bound with AMPCPP
Classification: LIGASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-07-18
Authors: Yamashita, S., Tomita, K.
PDB entry 5y0r: Crystal structure of Thermotoga maritima TmcAL (apo, form I)
Classification: LIGASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2017-07-18
Authors: Yamashita, S., Tomita, K.
PDB entry 5y0s: Crystal structure of apo Thermotoga maritima TmcAL(Form II)
Classification: LIGASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.103 Å
Deposited: 2017-07-18
Authors: Yamashita, S., Tomita, K.
PDB entry 5y0t: Crystal structure of Thermotoga maritima TmcAL bound with alpha-thio ATP(Form II)
Classification: LIGASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-07-18
Authors: Yamashita, S., Tomita, K.
PDB entry 5y0u: The solution structure of AEBP2 C2H2 zinc fingers
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-07-18
Authors: Sun, A., Shi, Y., Wu, J.
PDB entry 5y0v: Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with berberine
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.423 Å
Deposited: 2017-07-18
Authors: Duan, Y.W., Liu, T., Tang, J.Y., Li, M., Yang, Q.
PDB entry 5y0w: The structure of RVFV Gn head domain
Classification: VIRAL PROTEIN
Source organism: Rift valley fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-07-19
Authors: Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.
PDB entry 5y0x: Crystal structure of human FABP4 complexed with ligand 2-fluoro-3-((4-methoxynaphthalene)-1-sulfonamido)benzoic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.604 Å
Deposited: 2017-07-19
Authors: Su, H.X., Liu, Q.F., Xu, Y.C.
PDB entry 5y0y: RVFV GN-AU
Classification: VIRAL PROTEIN
Source organism: Rift valley fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.398 Å
Deposited: 2017-07-19
Authors: Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.
PDB entry 5y0z: Human SIRT2 in complex with a specific inhibitor, NPD11033
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-07-19
Authors: Kudo, N., Ito, A., Yoshida, M.
PDB entry 5y10: SFTSV Gn head domain
Classification: VIRAL PROTEIN
Source organism: Severe fever with thrombocytopenia virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-07-19
Authors: Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.
PDB entry 5y11: SFTSV GN with neutralizing antibody MAb4-5
Classification: IMMUNE SYSTEM/VIRAL SYSTEM
Source organism: Homo sapiens; Severe fever with thrombocytopenia virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-07-19
Authors: Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.
PDB entry 5y12: Crystal structure of human FABP4 complexed with ligand 5-((4-methoxynaphthalene)-1-sulfonamido)pentanoic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-07-19
Authors: Su, H.X., Liu, Q.F., Xu, Y.C.
PDB entry 5y13: Crystal structure of human FABP4 complexed with ligand 5-((4-bromonaphthalene)-1-sulfonamido)pentanoic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-07-19
Authors: Su, H.X., Liu, Q.F., Xu, Y.C.
PDB entry 5y14: Crystal structure of LP-40/N44
Classification: VIRAL PROTEIN/INHIBITOR
Experimental method: X-RAY DIFFRACTION
Resolution: 1.762 Å
Deposited: 2017-07-19
Authors: Zhang, X., Wang, X., He, Y.
PDB entry 5y15: Crystal structure of human DUSP28
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-07-19
Authors: Ku, B., Hong, W., Kim, S.J., Ryu, S.E.
PDB entry 5y16: Crystal structure of human DUSP28(Y102H)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.399 Å
Deposited: 2017-07-19
Authors: Ku, B., Kim, M., Kim, S.J., Ryu, S.E.
PDB entry 5y17: CATPO mutant - E316F
Classification: OXIDOREDUCTASE
Source organism: Mycothermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-07-19
Authors: Karakus Yuzugullu, Y., Goc, G., Balci, S., Pearson, A.R., Yorke, B.
PDB entry 5y18: Crystal structure of DAXX helical bundle domain in complex with ATRX
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.202 Å
Deposited: 2017-07-19
Authors: Chen, Y., Wang, X.
PDB entry 5y19: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-2-((2S,3R)-3-amino-2-hydroxy-4-phenylbutanamido)- N-hydroxy-4-methylpentanamide.
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2017-07-19
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.
PDB entry 5y1a: HBP35 of Porphyromonas gingivalis
Classification: ELECTRON TRANSPORT
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-07-20
Authors: Kakuda, S., Suzuki, M., Sato, K.
PDB entry 5y1b: Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with a berberine derivative (SYSU-00679)
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.207 Å
Deposited: 2017-07-20
Authors: Duan, Y.W., Liu, T., Zhou, Y., Tang, J.Y., Li, M., Yang, Q.
PDB entry 5y1d: Monomeric L-threonine 3-dehydrogenase from metagenome database (apo form)
Classification: OXIDOREDUCTASE
Source organism: uncultured archaeon MedDCM-OCT-S05-C57
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-07-20
Authors: Motoyama, T., Nakano, S., Yamamoto, Y., Tokiwa, H., Asano, Y., Ito, S.
PDB entry 5y1e: monomeric L-threonine 3-dehydrogenase from metagenome database (L-Ser and NAD+ bound form)
Classification: OXIDOREDUCTASE
Source organism: uncultured archaeon MedDCM-OCT-S05-C57
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-07-20
Authors: Motoyama, T., Nakano, S., Yamamoto, Y., Tokiwa, H., Asano, Y., Ito, S.
PDB entry 5y1f: Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form)
Classification: OXIDOREDUCTASE
Source organism: uncultured archaeon MedDCM-OCT-S05-C57
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2017-07-20
Authors: Motoyama, T., Nakano, S., Yamamoto, Y., Tokiwa, H., Asano, Y., Ito, S.
PDB entry 5y1g: Monomeric L-threonine 3-dehydrogenase from metagenome database (AKB and NADH bound form)
Classification: OXIDOREDUCTASE
Source organism: uncultured archaeon MedDCM-OCT-S05-C57
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2017-07-20
Authors: Motoyama, T., Nakano, S., Yamamoto, Y., Tokiwa, H., Asano, Y., Ito, S.
PDB entry 5y1h: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-2-(3-(2,4-difluorobenzyl)ureido)-N-hydroxy-4-methylpentanamide
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2017-07-20
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.
PDB entry 5y1i: The crystal structure of GfsF
Classification: OXIDOREDUCTASE
Source organism: Streptomyces graminofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-07-20
Authors: Miyanaga, A., Kudo, F., Eguchi, T.
PDB entry 5y1j: Crystal structure of human FXR in complex with a functional drug ligand
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-07-20
Authors: Lu, Y., Li, Y.
PDB entry 5y1k: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-2-(3-(2-chlorobenzyl)ureido)-N-hydroxy-4-methylpentanamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2017-07-20
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.
PDB entry 5y1q: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-2-(3-(3-chlorobenzyl)ureido)-N-hydroxy-4-methylpentanamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2017-07-21
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.
PDB entry 5y1r: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-N-hydroxy-4-methyl-2-(3-( o-tolyl)ureido)pentanamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2017-07-21
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.
PDB entry 5y1s: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-2-(3-(3,4-dimethylbenzyl)ureido)-N-hydroxy-4-methylpentanamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2017-07-21
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.
PDB entry 5y1t: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-2-(3-(2,3-dimethylbenzyl)ureido)-N-hydroxy-4-methylpentanamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2017-07-21
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.
PDB entry 5y1u: Crystal structure of RBBP4 bound to AEBP2 RRK motif
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.141 Å
Deposited: 2017-07-21
Authors: Sun, A., Li, F., Wu, J., Shi, Y.
PDB entry 5y1v: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-2-(3-(2,6-diethylphenyl)ureido)- N-hydroxy-4-methylpentanamide
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2017-07-21
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.
PDB entry 5y1w: Crystal structure of Plasmodium falciparum aminopeptidase N with Magnesium bound to active site Zinc
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2017-07-21
Authors: Marapaka, A.K., Addlagatta, A.
PDB entry 5y1x: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with actinonin
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2017-07-21
Authors: Marapaka, A.K., Addlagatta, A.
PDB entry 5y1y: Complex structure of nitroxoline with the first bromodomain of BRD4
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.912 Å
Deposited: 2017-07-21
Authors: Jiang, H., Luo, C.
PDB entry 5y1z: Crystal structure of ZMYND8 PHD-BROMO-PWWP tandem in complex with Drebrin ADF-H domain
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.676 Å
Deposited: 2017-07-22
Authors: Yao, N., Li, J., Liu, H., Wan, J., Liu, W., Zhang, M.
PDB entry 5y20: Crystal structure of AL1 PHD finger bound to H3K4me3
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.409 Å
Deposited: 2017-07-22
Authors: Zhao, S., Zhang, B., Li, H.
PDB entry 5y21: Crystal structure of AL2 PAL domain in complex with AtRing1a proximal site
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.769 Å
Deposited: 2017-07-22
Authors: Peng, L., Wang, L.L., Huang, Y.
PDB entry 5y22: NMR-Based Model of the 22 Amino Acid Peptide in Polysialyltransferase Domain (PSTD) of the Polysialyltransferase ST8Sia IV
Classification: SUGAR BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2017-07-23
Authors: Lu, B., Liao, S.M., Huang, J.M., Lu, Z.L., Chen, D., Liu, X.H., Zhou, G.P., Huang, R.B.
PDB entry 5y23: X-ray crystal structure of Pseudoazurin Met16Phe variant
Classification: ELECTRON TRANSPORT
Source organism: Achromobacter cycloclastes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2017-07-23
Authors: Yamaguchi, T., Akao, K., Kohzuma, T.
PDB entry 5y24: Crystal structure of AimR from Bacillus phage SPbeta in complex with its signalling peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Bacillus phage SPbeta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.922 Å
Deposited: 2017-07-24
Authors: Wang, Q., Guan, Z.Y., Zou, T.T., Yin, P.
PDB entry 5y25: EGFR kinase domain mutant (T790M/L858R) with covalent ligand NS-062
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.102 Å
Deposited: 2017-07-24
Authors: Shiroishi, M., Abe, Y., Caaveiro, J.M.M., Sakamoto, S., Morimoto, S., Fuchida, H., Shindo, N., Ojida, A.
PDB entry 5y26: Crystal structure of native Dpb4-Dpb3
Classification: DNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.003 Å
Deposited: 2017-07-24
Authors: Chen, Y.H., Li, Y., Gao, F.
PDB entry 5y27: Crystal structure of Se-Met Dpb4-Dpb3
Classification: DNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe; Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-07-24
Authors: Li, Y., Gao, F., Su, M., Zhang, F.B., Chen, Y.H.
PDB entry 5y28: Crystal structure of H. pylori HtrA with PDZ2 deletion
Classification: HYDROLASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08607 Å
Deposited: 2017-07-24
Authors: Zhang, Z., Huang, Q., Tao, X.
PDB entry 5y29: Crystal structure of Ostrinia furnacalis Group II chitinase catalytic domain 1
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-07-24
Authors: Chen, W., Qu, M.B., Zhou, Y., Yang, Q.
PDB entry 5y2a: Crystal structure of Ostrinia furnacalis Group II chitinase catalytic domain 2
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-07-24
Authors: Chen, W., Qu, M.B., Zhou, Y., Yang, Q.
PDB entry 5y2b: Crystal structure of Ostrinia furnacalis Group II chitinase catalytic domain 1 in complex with HEPTA-N-ACETYLCHITOOCTAOSE (NAG)7
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-07-24
Authors: Chen, W., Qu, M.B., Zhou, Y., Yang, Q.
PDB entry 5y2c: Crystal structure of Ostrinia furnacalis Group II chitinase catalytic domain 2 E2180L mutant in complex with PENTA-N-ACETYLCHITOOCTAOSE (NAG)5
Classification: HYDROLASE
Source organism: Ostrinia furnacalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2017-07-24
Authors: Chen, W., Qu, M.B., Zhou, Y., Yang, Q.
PDB entry 5y2d: Crystal structure of H. pylori HtrA
Classification: HYDROLASE
Source organism: Helicobacter pylori; Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7001 Å
Deposited: 2017-07-25
Authors: Zhang, Z., Huang, Q., Tao, X.
PDB entry 5y2e: Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain NCDV
Classification: VIRAL PROTEIN
Source organism: Rotavirus A (strain RVA/Cow/United States/NCDV-Lincoln/1969/G6P6[1])
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-07-25
Authors: Suguna, K., Kumar, S.
PDB entry 5y2f: Human SIRT6 in complex with allosteric activator MDL-801
Classification: HYDROLASE/PEPTIDE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2017-07-25
Authors: Zhang, J., Huang, Z., Song, K.
PDB entry 5y2g: Structure of MBP tagged GBS CAMP
Classification: TOXIN
Source organism: Escherichia coli; Streptococcus agalactiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-07-25
Authors: Jin, T., Li, Y.
PDB entry 5y2h: Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66
Classification: VIRAL PROTEIN
Source organism: Bovine rotavirus G10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-07-25
Authors: Suguna, K., Kumar, S.
PDB entry 5y2i: Phosphoglycerate mutase 1 (PGAM1) complexed with its inhibitor PGMI-004A
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.917 Å
Deposited: 2017-07-26
Authors: Jiang, L., Zhou, L.
PDB entry 5y2j: Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
Classification: VIRAL PROTEIN
Source organism: Bovine rotavirus G10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2017-07-26
Authors: Suguna, K., Kumar, S.
PDB entry 5y2k: A human antibody AF4H1L1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-07-26
Authors: Xiao, H., Qi, J., Gao, F.G.
PDB entry 5y2l: Crystal structure of a group 2 HA binding antibody AF4H1K1 Fab in complex with the 1968 H3N2 pandemic (H3-AC/68) hemagglutinin
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens; Influenza A virus (strain A/Aichi/2/1968 H3N2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.902 Å
Deposited: 2017-07-26
Authors: Xiao, H., Qi, J., Gao, F.G.
PDB entry 5y2m: Crystal structure of a group 2 HA binding antibody AF4H1K1 Fab in complex with the H4N6 duck isolate (H4-CZ/56) hemagglutinin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2017-07-26
Authors: Xiao, H., Qi, J., Gao, F.G.
PDB entry 5y2o: Structure of PPARgamma ligand binding domain-pioglitazone complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2017-07-26
Authors: Im, Y.J., Lee, M.
PDB entry 5y2p: Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 89% RH
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. (strain TB-90)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-07-26
Authors: Itoh, T., Nishiya, Y.
PDB entry 5y2q: X-ray structure of acetylcholine binding protein (AChBP) complexed with a small molecule
Classification: PROTEIN BINDING/INHIBITOR
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.363 Å
Deposited: 2017-07-26
Authors: Jiang, L.L., Zhou, L.
PDB entry 5y2r: 2.5 atm CO2-pressurized human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2017-07-27
Authors: Kim, C.U., Park, S.Y.
PDB entry 5y2s: 7.0 atm CO2-pressurized human carbonic anhydrase II
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 2017-07-27
Authors: Kim, C.U., Park, S.Y.
PDB entry 5y2t: Structure of PPARgamma ligand binding domain - lobeglitazone complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-07-27
Authors: Im, Y.J., Lee, M.
PDB entry 5y2u: X-ray structure of Phosphoglycerate Mutase 1(PGAM1) complexed with a small molecule
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2017-07-27
Authors: Jiang, L.L., Zhou, L.
PDB entry 5y2v: Strcutrue of the full-length CcmR complexed with 2-OG from Synechocystis PCC6803
Classification: TRANSCRIPTION
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-07-27
Authors: Jiang, Y.L., Wang, X.P., Sun, H., Cheng, W., Han, S.J., Li, W.F., Chen, Y., Zhou, C.Z.
PDB entry 5y2w: Structure of Synechocystis PCC6803 CcmR regulatory domain in complex with 2-PG
Classification: TRANSCRIPTION
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-07-27
Authors: Jiang, Y.L., Wang, X.P., Sun, H., Cheng, W., Cao, D.D., Han, S.J., Li, W.F., Chen, Y., Zhou, C.Z.
PDB entry 5y2x: Crystal structure of apo-HaloTag (M175C)
Classification: HYDROLASE
Source organism: Rhodococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2017-07-27
Authors: Lee, H., Kang, M., Rhee, H., Lee, C.
PDB entry 5y2y: Crystal structure of HaloTag (M175C) complexed with dansyl-PEG2-HaloTag ligand
Classification: HYDROLASE
Source organism: Rhodococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2017-07-27
Authors: Lee, H., Kang, M., Rhee, H., Lee, C.
PDB entry 5y2z: Crystal structure of human LGI1 EPTP-ADAM22 complex
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2017-07-27
Authors: Yamagata, A., Fukai, S.
PDB entry 5y30: Crystal structure of LGI1 LRR domain
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.781 Å
Deposited: 2017-07-27
Authors: Yamagata, A., Fukai, S.
PDB entry 5y31: Crystal structure of human LGI1-ADAM22 complex
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 7.125 Å
Deposited: 2017-07-27
Authors: Yamagata, A., Fukai, S.
PDB entry 5y32: Crystal structure of PTP delta Ig1-Ig2 in complex with IL1RAPL1
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.701 Å
Deposited: 2017-07-27
Authors: Yamagata, A., Fukai, S.
PDB entry 5y33: Crystal structure of alginate lyase from Flavobacterium sp. UMI-01 reveals polymannuronate specificity
Classification: STRUCTURAL PROTEIN
Source organism: Flavobacterium sp. UMI-01
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2017-07-27
Authors: Qin, H.-M., Miyakawa, T., Nakamura, A., Tanokura, M.
PDB entry 5y34: Membrane-bound respiratory [NiFe]-hydrogenase from Hydrogenovibrio marinus in a ferricyanide-oxidized condition
Classification: OXIDOREDUCTASE
Source organism: Hydrogenovibrio marinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2017-07-27
Authors: Shomura, Y., Yoon, K.S., Nishihara, H., Higuchi, Y.
PDB entry 5y35: Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH1
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.994 Å
Deposited: 2017-07-27
Authors: Jiang, L.L., Zhou, L.
PDB entry 5y36: Cryo-EM structure of SpCas9-sgRNA-DNA ternary complex
Classification: HYDROLASE/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2017-07-27
Authors: Huang, Q., Li, G., Huai, C.
PDB entry 5y37: Crystal structure of GBS GAPDH
Classification: TRANSFERASE
Source organism: Streptococcus agalactiae serotype III (strain NEM316)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2017-07-28
Authors: Jin, T., Zhou, K.
PDB entry 5y38: Crystal structure of C7orf59-HBXIP complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-07-28
Authors: Zhang, T., Ding, J.
PDB entry 5y39: Crystal structure of Ragulator complex (p18 76-145)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2017-07-28
Authors: Zhang, T., Ding, J.
PDB entry 5y3a: Crystal structure of Ragulator complex (p18 49-161)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-07-28
Authors: Zhang, T., Ding, J.
PDB entry 5y3b: Crystal structure of mouse Ccd1 DIX domain
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-07-28
Authors: Terawaki, S., Shibata, N., Higuchi, Y.
PDB entry 5y3c: Crystal structure of zebrafish Ccd1 DIX domain
Classification: SIGNALING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2017-07-28
Authors: Terawaki, S., Shibata, N., Higuchi, Y.
PDB entry 5y3d: Structural insight into the interaction between RNA polymerase and VPg for norovirus replication
Classification: VIRAL PROTEIN
Source organism: Murine norovirus; Murine norovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2017-07-28
Authors: Kim, K.H., Lee, J.-H., Seok, J.H.
PDB entry 5y3e: Crystal structure of SARS coronavirus papain-like protease in complex with glycerol
Classification: HYDROLASE
Source organism: Human SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2017-07-28
Authors: Lin, M.H., Chou, C.Y.
PDB entry 5y3i: Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-N-hydroxy-4-methyl-2-(3-(3-methylbenzyl)ureido)pentanamide
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2017-07-28
Authors: Marapaka, A.K., Zhang, Y., Addlagatta, A.