LiteFold/PDB huggingface dataset:
PDB entry 3acx: Crystal structure of the C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus complexed with BPH-673
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2010-01-13
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J., Oldfield, E.
PDB entry 3acy: Crystal structure of the C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus complexed with BPH-702
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2010-01-13
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J., Oldfield, E.
PDB entry 3acz: Crystal structure of Entamoeba histolytica methionine gamma-lyase 1
Classification: LYASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2010-01-13
Authors: Karaki, T., Sato, D., Shimizu, A., Nozaki, T., Harada, S.
PDB entry 3ad4: Crystal Structure of Methoxy Benzofuran Derivative bound to the Kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-01-14
Authors: Tsuji, E.
PDB entry 3ad5: Crystal structure of Triazolone derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-01-14
Authors: Tsuji, E.
PDB entry 3ad6: Crystal structure of Pyrazolo pyrimidine derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2010-01-14
Authors: Tsuji, E.
PDB entry 3ad7: Heterotetrameric Sarcosine Oxidase from Corynebacterium sp. U-96 in complex with methylthio acetate
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium sp. U-96
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-01-15
Authors: Suzuki, H., Moriguchi, T., Ida, K.
PDB entry 3ad8: Heterotetrameric Sarcosine Oxidase from Corynebacterium sp. U-96 in complex with pyrrole 2-carboxylate
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium sp. U-96
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-01-15
Authors: Suzuki, H., Moriguchi, T., Ida, K.
PDB entry 3ad9: Heterotetrameric Sarcosine Oxidase from Corynebacterium sp. U-96 sarcosine-reduced form
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium sp. U-96
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-01-15
Authors: Suzuki, H., Moriguchi, T., Ida, K.
PDB entry 3ada: Heterotetrameric Sarcosine Oxidase from Corynebacterium sp. U-96 in complex with sulfite
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium sp. U-96
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-01-15
Authors: Suzuki, H., Moriguchi, T., Ida, K.
PDB entry 3adb: Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1)
Classification: TRANSFERASE/RNA
Source organism: Methanocaldococcus jannaschii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-01-18
Authors: Itoh, Y., Chiba, S., Sekine, S., Yokoyama, S.
PDB entry 3adc: Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2)
Classification: TRANSFERASE/RNA
Source organism: Methanocaldococcus jannaschii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-01-18
Authors: Itoh, Y., Chiba, S., Sekine, S., Yokoyama, S.
PDB entry 3add: Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3)
Classification: TRANSFERASE/RNA
Source organism: Methanocaldococcus jannaschii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-01-18
Authors: Itoh, Y., Chiba, S., Sekine, S., Yokoyama, S.
PDB entry 3ade: Crystal Structure of Keap1 in Complex with Sequestosome-1/p62
Classification: TRANSCRIPTION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-01-19
Authors: Kurokawa, H., Yamamoto, M.
PDB entry 3adf: Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)
Classification: FLUORESCENT PROTEIN
Source organism: Galaxea fascicularis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-01-20
Authors: Ebisawa, T., Yamamura, A., Kameda, Y., Hayakawa, K., Nagata, K., Tanokura, M.
PDB entry 3adg: Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-01-22
Authors: Yuan, Y.A., Chen, H.Y.
PDB entry 3adi: Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing
Classification: GENE REGULATION/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2010-01-22
Authors: Yuan, Y.A., Chen, H.Y.
PDB entry 3adj: Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-01-22
Authors: Yuan, Y.A., Chen, H.Y.
PDB entry 3adk: REFINED STRUCTURE OF PORCINE CYTOSOLIC ADENYLATE KINASE AT 2.1 ANGSTROMS RESOLUTION
Classification: TRANSFERASE(PHOSPHOTRANSFERASE)
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1987-11-19
Authors: Schulz, G.E.
PDB entry 3adl: Structure of TRBP2 and its molecule implications for miRNA processing
Classification: GENE REGULATION/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-01-22
Authors: Yuan, Y.A., Chen, H.Y.
PDB entry 3adm: Crystal structure of (Pro-Pro-Gly)4-Hyp-Ser-Gly-(Pro-Pro-Gly)4
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2010-01-22
Authors: Okuyama, K., Miyama, K., Masakiyo, K., Mizuno, K., Bachinger, H.P.
PDB entry 3ado: Crystal Structure of the Rabbit L-Gulonate 3-Dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-01-26
Authors: Asada, Y., Hara, A., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3adp: Crystal Structure of the Rabbit L-Gulonate 3-Dehydrogenase (NADH Form)
Classification: OXIDOREDUCTASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2010-01-26
Authors: Asada, Y., Hara, A., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3adr: The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii
Classification: SIGNALING PROTEIN
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-01-28
Authors: Shimada, A., Ishikawa, H., Nakagawa, N., Kuramitsu, S., Masui, R.
PDB entry 3ads: Human PPARgamma ligand-binding domain in complex with indomethacin
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2010-01-29
Authors: Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
PDB entry 3adt: Human PPARgamma ligand-binding domain in complex with 5-hydroxy-indole acetate
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2010-01-29
Authors: Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
PDB entry 3adu: Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2010-01-29
Authors: Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
PDB entry 3adv: Human PPARgamma ligand-binding domain in complex with serotonin
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2010-01-29
Authors: Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
PDB entry 3adw: Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate and 15-oxo-eicosatetraenoic acid
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2010-01-29
Authors: Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
PDB entry 3adx: Human PPARgamma ligand-binding domain in complex with indomethacin and nitro-233
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2010-01-29
Authors: Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
PDB entry 3ady: Crystal structure of DotD from Legionella
Classification: PROTON TRANSPORT
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-01-29
Authors: Imada, K., Nakano, N., Kubori, T., Kinoshita, M., Nagai, H.
PDB entry 3adz: Crystal structure of the C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus complexed with intermediate PSPP
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2010-01-31
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J., Oldfield, E.
PDB entry 3ae0: Crystal structure of the C(30) carotenoid dehydrosqualene synthase from Staphylococcus aureus complexed with geranylgeranyl thiopyrophosphate
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2010-01-31
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J., Oldfield, E.
PDB entry 3ae1: Crystal structure of porcine heart mitochondrial complex II bound with N-Phenyl-2-(trifluoromethyl)-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.139 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3ae2: Crystal structure of porcine heart mitochondrial complex II bound with 2-Hydroxy-N-phenyl-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3ae3: Crystal structure of porcine heart mitochondrial complex II bound with 2-Nitro-N-phenyl-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3ae4: Crystal structure of porcine heart mitochondrial complex II bound with 2-Iodo-N-methyl-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3ae5: Crystal structure of porcine heart mitochondrial complex II bound with 2-Methyl-N-(3-isopropoxy-phenyl)-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3ae6: Crystal structure of porcine heart mitochondrial complex II bound with N-(3-Isopropoxy-phenyl)-phthalamicacid
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3ae7: Crystal structure of porcine heart mitochondrial complex II bound with 2-Iodo-N-(3-isopropoxy-phenyl)-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3ae8: Crystal structure of porcine heart mitochondrial complex II bound with N-(3-Isopropoxy-phenyl)-2-trifluoromethylbenzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3ae9: Crystal structure of porcine heart mitochondrial complex II bound with N-(3-Pentafluorophenyloxy-phenyl)-2-trifluoromethyl-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3aea: Crystal structure of porcine heart mitochondrial complex II bound with N-(3-Dimethylaminomethyl-phenyl)-2-trifluoromethyl-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.39 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3aeb: Crystal structure of porcine heart mitochondrial complex II bound with N-(3-Phenoxy-phenyl)-2-trifluoromethyl-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3aec: Crystal structure of porcine heart mitochondrial complex II bound with 2-Iodo-N-(1-methylethyl)-benzamid
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.61 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3aed: Crystal structure of porcine heart mitochondrial complex II bound with 2-Iodo-N-phenyl-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3aee: Crystal structure of porcine heart mitochondrial complex II bound with Atpenin A5
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3aef: Crystal structure of porcine heart mitochondrial complex II with an empty quinone-binding pocket
Classification: OXIDOREDUCTASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3aeg: Crystal structure of porcine heart mitochondrial complex II bound with N-Biphenyl-3-yl-2-iodo-benzamide
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.27 Å
Deposited: 2010-02-04
Authors: Harada, S., Sasaki, T., Shindo, M., Kido, Y., Inaoka, D.K., Omori, J., Osanai, A., Sakamoto, K., Mao, J., Matsuoka, S., Inoue, M., Honma, T., Tanaka, A., Kita, K.
PDB entry 3aeh: Integral membrane domain of autotransporter Hbp
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-02-04
Authors: Tajima, N., Park, S.-Y., Tame, J.R.H.
PDB entry 3aei: Crystal structure of the prefoldin beta2 subunit from Thermococcus strain KS-1
Classification: CHAPERONE
Source organism: Thermococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-02-08
Authors: Ohtaki, A., Sugano, Y., Sato, T., Noguchi, K., Miyatake, H., Yohda, M.
PDB entry 3aej: Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1 tetramer containing Michaelis complex and methionine-pyridoxal-5'-phosphate
Classification: LYASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2010-02-10
Authors: Karaki, T., Sato, D., Shimizu, A., Nozaki, T., Harada, S.
PDB entry 3aek: Structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter capsulatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-02-10
Authors: Muraki, N., Nomata, J., Shiba, T., Fujita, Y., Kurisu, G.
PDB entry 3ael: Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1 containing methionine imine-pyridoxamine-5'-phosphate and alpha-amino-alpha, beta-butenoic acid-pyridoxal-5'-phosphate
Classification: LYASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-02-10
Authors: Karaki, T., Sato, D., Shimizu, A., Nozaki, T., Harada, S.
PDB entry 3aem: Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1 containing Michaelis complex and methionine imine-pyridoxamine-5'-phosphate
Classification: LYASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-02-10
Authors: Karaki, T., Sato, D., Shimizu, A., Nozaki, T., Harada, S.
PDB entry 3aen: Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1 containing Michaelis complex and alpha-amino-alpha, beta-butenoic acid-pyridoxal-5'-phosphate
Classification: LYASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-02-10
Authors: Karaki, T., Sato, D., Shimizu, A., Nozaki, T., Harada, S.
PDB entry 3aeo: Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1 containing methionine alpha, beta-enamine-pyridoxamine-5'-phosphate
Classification: LYASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2010-02-10
Authors: Karaki, T., Sato, D., Shimizu, A., Nozaki, T., Harada, S.
PDB entry 3aep: Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1 containing alpha-amino-alpha, beta-butenoic acid-pyridoxal-5'-phosphate
Classification: LYASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2010-02-10
Authors: Karaki, T., Sato, D., Shimizu, A., Nozaki, T., Harada, S.
PDB entry 3aeq: Structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter capsulatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-02-10
Authors: Muraki, N., Nomata, J., Shiba, T., Fujita, Y., Kurisu, G.
PDB entry 3aer: Structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter capsulatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-02-10
Authors: Muraki, N., Nomata, J., Shiba, T., Fujita, Y., Kurisu, G.
PDB entry 3aes: Structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter capsulatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-02-10
Authors: Muraki, N., Nomata, J., Shiba, T., Fujita, Y., Kurisu, G.
PDB entry 3aet: Structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter capsulatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2010-02-10
Authors: Muraki, N., Nomata, J., Shiba, T., Fujita, Y., Kurisu, G.
PDB entry 3aeu: Structure of the light-independent protochlorophyllide reductase catalyzing a key reduction for greening in the dark
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter capsulatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-02-10
Authors: Muraki, N., Nomata, J., Shiba, T., Fujita, Y., Kurisu, G.
PDB entry 3aev: Crystal structure of a/eIF2alpha-aDim2p-rRNA complex from Pyrococcus horikoshii OT3
Classification: TRANSLATION/RNA BINDING PROTEIN/RNA
Source organism: Pyrococcus horikoshii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-02-10
Authors: Tanokura, M., Jia, M.Z., Nagata, K.
PDB entry 3aex: Catalytic intermediate analogue of threonine synthase from Thermus thermophilus HB8
Classification: LYASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-02-13
Authors: Murakawa, T., Machida, Y., Hayashi, H.
PDB entry 3aey: Apo form of threonine synthase from Thermus thermophilus HB8
Classification: LYASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2010-02-17
Authors: Murakawa, T., Machida, Y., Hayashi, H.
PDB entry 3aez: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GDP and Phosphopantothenate
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-02-18
Authors: Chetnani, B., Kumar, P., Surolia, A., Vijayan, M.
PDB entry 3af0: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GDP and Pantothenate
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-02-19
Authors: Chetnani, B., Kumar, P., Surolia, A., Vijayan, M.
PDB entry 3af1: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GDP
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-02-19
Authors: Chetnani, B., Kumar, P., Surolia, A., Vijayan, M.
PDB entry 3af2: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with AMPPCP
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-02-22
Authors: Chetnani, B., Kumar, P., Surolia, A., Vijayan, M.
PDB entry 3af3: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GMPPCP and Pantothenate
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2010-02-22
Authors: Chetnani, B., Kumar, P., Surolia, A., Vijayan, M.
PDB entry 3af4: Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GMPPCP
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-02-22
Authors: Chetnani, B., Kumar, P., Surolia, A., Vijayan, M.
PDB entry 3af5: The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-02-23
Authors: Nishida, Y., Ishikawa, H., Nakagawa, N., Masui, R., Kuramitsu, S.
PDB entry 3af6: The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog
Classification: HYDROLASE/RNA
Source organism: Pyrococcus horikoshii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-02-24
Authors: Nishida, Y., Ishikawa, H., Nakagawa, N., Masui, R., Kuramitsu, S.
PDB entry 3af7: Crystal Structure of 25Pd(allyl)/apo-Fr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2010-02-24
Authors: Abe, S., Hikage, T., Watanabe, Y., Kitagawa, S., Ueno, T.
PDB entry 3af8: Crystal Structure of Pd(ally)/apo-C126AFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2010-02-24
Authors: Abe, S., Hikage, T., Watanabe, Y., Kitagawa, S., Ueno, T.
PDB entry 3af9: Crystal Structure of Pd(allyl)/apo-C48AFr
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2010-02-24
Authors: Abe, S., Hikage, T., Watanabe, Y., Kitagawa, S., Ueno, T.
PDB entry 3afa: The human nucleosome structure
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-02-24
Authors: Tachiwana, H., Kagawa, W., Osakabe, A., Koichiro, K., Shiga, T., Kimura, H., Kurumizaka, H.
PDB entry 3afb: Crystal structures of catalytic site mutants of active domain 2 of chitinase from Pyrococcus furiosus
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2010-02-25
Authors: Tsuji, H.
PDB entry 3afc: Mouse Semaphorin 6A extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-02-26
Authors: Yasui, N., Nogi, T., Mihara, E., Takagi, J.
PDB entry 3afe: Crystal structure of the HsaA monooxygenase from M.tuberculosis
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-02-28
Authors: D'Angelo, I., Lin, L.Y., Dresen, C., Tocheva, E.I., Eltis, L.D., Strynadka, N.
PDB entry 3aff: Crystal structure of the HsaA monooxygenase from M. tuberculosis
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-02-28
Authors: D'Angelo, I., Lin, L.Y., Dresen, C., Tocheva, E.I., Strynadka, N., Eltis, L.D.
PDB entry 3afg: Crystal structure of ProN-Tk-SP from Thermococcus kodakaraensis
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-03-01
Authors: Foophow, T., Tanaka, S., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3afh: Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with a glutamyl-AMP analog
Classification: LIGASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-03-01
Authors: Ito, T., Yokoyama, S.
PDB entry 3afi: Crystal structure of DBJA (HIS-DBJA)
Classification: HYDROLASE
Source organism: Bradyrhizobium japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2010-03-02
Authors: Sato, Y., Senda, T.
PDB entry 3afj: Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase triple mutant
Classification: TRANSFERASE
Source organism: Cellvibrio gilvus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-03-04
Authors: Hidaka, M., Ogawa, N., Fushinobu, S.
PDB entry 3afk: Crystal Structure of Agrocybe aegerita lectin AAL complexed with Thomsen-Friedenreich antigen
Classification: HYDROLASE
Source organism: Agrocybe aegerita
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2010-03-09
Authors: Feng, L., Li, D., Wang, D.
PDB entry 3afl: Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide
Classification: LYASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2010-03-09
Authors: Ochiai, A., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3afm: Crystal structure of aldose reductase A1-R responsible for alginate metabolism
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2010-03-10
Authors: Takase, R., Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3afn: Crystal structure of aldose reductase A1-R complexed with NADP
Classification: OXIDOREDUCTASE
Source organism: Sphingomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2010-03-10
Authors: Takase, R., Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3afo: Crystal Structure of Yeast NADH Kinase complexed with NADH
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-03-10
Authors: Ando, T., Ohashi, K., Ochiai, A., Miyagi, H., Kawai, S., Mikami, B., Murata, K.
PDB entry 3afp: Crystal structure of the single-stranded DNA binding protein from Mycobacterium leprae (Form I)
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium leprae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2010-03-10
Authors: Kaushal, P.S., Singh, P., Sharma, A., Muniyappa, K., Vijayan, M.
PDB entry 3afq: Crystal structure of the single-stranded DNA binding protein from Mycobacterium leprae (Form II)
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium leprae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-03-10
Authors: Kaushal, P.S., Singh, P., Sharma, A., Muniyappa, K., Vijayan, M.
PDB entry 3afr: Crystal Structure of VDR-LBD/22S-Butyl-1a,24R-dihydroxyvitamin D3 complex
Classification: TRANSCRIPTION/Transcription regulator
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-03-10
Authors: Inaba, Y., Nakabayashi, M., Itoh, T., Ikura, T., Ito, N., Yamamoto, K.
PDB entry 3afv: Dye-decolorizing peroxidase (DyP) at 1.4 A resolution
Classification: OXIDOREDUCTASE
Source organism: Bjerkandera adusta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2010-03-11
Authors: Sugano, Y., Yoshida, T., Tsuge, H.
PDB entry 3ag0: Crystal structure of carbonmonoxy human cytoglobin
Classification: OXYGEN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-03-17
Authors: Makino, M., Sawai, H., Shiro, Y., Sugimoto, H.
PDB entry 3ag1: Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 280 K
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-03-19
Authors: Muramoto, K., Ohta, K., Shinzawa-Itoh, K., Kanda, K., Taniguchi, M., Nabekura, H., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 3ag2: Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 100 K
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.802 Å
Deposited: 2010-03-19
Authors: Muramoto, K., Ohta, K., Shinzawa-Itoh, K., Kanda, K., Taniguchi, M., Nabekura, H., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 3ag3: Bovine Heart Cytochrome c Oxidase in the Nitric Oxide-bound Fully Reduced State at 100 K
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-03-19
Authors: Muramoto, K., Ohta, K., Shinzawa-Itoh, K., Kanda, K., Taniguchi, M., Nabekura, H., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 3ag4: Bovine Heart Cytochrome c Oxidase in the Cyanide Ion-bound Fully Reduced State at 100 K
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2010-03-19
Authors: Muramoto, K., Ohta, K., Shinzawa-Itoh, K., Kanda, K., Taniguchi, M., Nabekura, H., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 3ag5: Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus
Classification: LIGASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-03-19
Authors: Satoh, A., Konishi, S., Tamura, H., Stickland, H.G., Whitney, H.M., Smith, A.G., Matsumura, H., Inoue, T.
PDB entry 3ag6: Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus in complex with pantoyl adenylate
Classification: LIGASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2010-03-19
Authors: Satoh, A., Konishi, S., Tamura, H., Stickland, H.G., Whitney, H.M., Smith, A.G., Matsumura, H., Inoue, T.
PDB entry 3ag7: An auxilin-like J-domain containing protein, JAC1 J-domain
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-03-24
Authors: Takano, A.
PDB entry 3ag9: Complex of PKA with the bisubstrate protein kinase inhibitor ARC-1012
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-03-26
Authors: Pflug, A., Lavogina, D., Uri, A., Engh, R.A., Bossemeyer, D.
PDB entry 3aga: Crystal structure of RCC-bound red chlorophyll catabolite reductase from Arabidopsis thaliana
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-03-30
Authors: Sugishima, M., Fukuyama, K.
PDB entry 3agb: F218V mutant of the substrate-free form of red chlorophyll catabolite reductase from Arabidopsis thaliana
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-03-30
Authors: Sugishima, M., Fukuyama, K.
PDB entry 3agc: F218V mutant of the substrate-bound red chlorophyll catabolite reductase from Arabidopsis thaliana
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-03-30
Authors: Sugishima, M., Fukuyama, K.
PDB entry 3agd: Crystal structure of Mglu in its native form in the presence of 4.3M NaCl
Classification: HYDROLASE
Source organism: Micrococcus luteus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-03-30
Authors: Yoshimune, K., Shirakihara, Y., Yumoto, I.
PDB entry 3age: Crystal structure of Mglu in its L-glutamate binding form in the presence of 4.3M NaCl
Classification: HYDROLASE
Source organism: Micrococcus luteus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-03-30
Authors: Yoshimune, K., Shirakihara, Y., Yumoto, I.
PDB entry 3agf: Crystal structure of Bacillus glutaminase in the presence of 4.3M NaCl
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-03-30
Authors: Yoshimune, K., Shirakihara, Y., Yumoto, I.
PDB entry 3agg: X-ray analysis of lysozyme in the absence of Arg
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-03-31
Authors: Ito, L., Shiraki, K., Hasegawa, K., Baba, S., Kumasaka, T.
PDB entry 3agh: X-ray analysis of lysozyme in the presence of 200 mM Arg
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2010-03-31
Authors: Ito, L., Shiraki, K., Hasegawa, K., Baba, S., Kumasaka, T.
PDB entry 3agi: High resolution X-ray analysis of Arg-lysozyme complex in the presence of 500 mM Arg
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2010-03-31
Authors: Ito, L., Shiraki, K., Hasegawa, K., Baba, S., Kumasaka, T.
PDB entry 3agk: Crystal structure of archaeal translation termination factor, aRF1
Classification: TRANSLATION
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-04-01
Authors: Kobayashi, K., Kikuno, I., Ishitani, R., Ito, K., Nureki, O.
PDB entry 3agl: Complex of PKA with the bisubstrate protein kinase inhibitor ARC-1039
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-04-02
Authors: Pflug, A., Ragozina, J., Uri, A., Bossemeyer, D., Engh, R.A.
PDB entry 3agm: Complex of PKA with the bisubstrate protein kinase inhibitor ARC-670
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-04-02
Authors: Pflug, A., Ragozina, J., Uri, A., Bossemeyer, D., Engh, R.A.
PDB entry 3agn: Crystal Structure of Ustilago sphaerogena Ribonuclease U2 Complexed with adenosine 3'-monophosphate
Classification: HYDROLASE
Source organism: Ustilago sphaerogena
Experimental method: X-RAY DIFFRACTION
Resolution: 0.96 Å
Deposited: 2010-04-03
Authors: Noguchi, S.
PDB entry 3ago: Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 3'-monophosphate
Classification: HYDROLASE
Source organism: Ustilago sphaerogena
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2010-04-03
Authors: Noguchi, S.
PDB entry 3agp: Structure of viral polymerase form I
Classification: TRANSLATION, TRANSFERASE
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-04-06
Authors: Takeshita, D., Tomita, K.
PDB entry 3agq: Structure of viral polymerase form II
Classification: TRANSLATION,TRANSFERASE
Source organism: Escherichia coli O157:H7; Escherichia phage Qbeta; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2010-04-06
Authors: Takeshita, D., Tomita, K.
PDB entry 3agr: Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum
Classification: HYDROLASE
Source organism: Neospora caninum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-04-06
Authors: Matoba, K., Shiba, T., Seiki, M., Asai, T., Harada, S.
PDB entry 3agt: Hemerythrin-like domain of DcrH (met)
Classification: METAL BINDING PROTEIN
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2010-04-06
Authors: Onoda, A., Okamoto, Y., Sugimoto, H., Mizohata, E., Inoue, T., Shiro, Y., Hayashi, T.
PDB entry 3agu: Hemerythrin-like domain of DcrH (semimet-R)
Classification: METAL BINDING PROTEIN
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.805 Å
Deposited: 2010-04-06
Authors: Onoda, A., Okamoto, Y., Sugimoto, H., Mizohata, E., Inoue, T., Shiro, Y., Hayashi, T.
PDB entry 3agv: Crystal structure of a human IgG-aptamer complex
Classification: Immune System/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2010-04-08
Authors: Nomura, Y., Sugiyama, S., Sakamoto, T., Miyakawa, S., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Nakamura, Y., Matsumura, H.
PDB entry 3agw: Crystal Structure of the Cytoplasmic Domain of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 in the absence of Na+
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-04-08
Authors: Inanobe, A.
PDB entry 3agx: Crystal structure of human Hsp40 Hdj1 peptide-binding domain
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2010-04-12
Authors: Suzuki, H., Noguchi, S., Satow, Y.
PDB entry 3agy: Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70
Classification: CHAPERONE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2010-04-12
Authors: Suzuki, H., Noguchi, S., Satow, Y.
PDB entry 3agz: Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70
Classification: CHAPERONE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2010-04-12
Authors: Suzuki, H., Noguchi, S., Satow, Y.
PDB entry 3ah1: HA1 subcomponent of botulinum type C progenitor toxin complexed with N-acetylneuramic acid
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-04-13
Authors: Nakamura, T., Tonozuka, T., Ide, A., Yuzawa, T., Oguma, K., Nishikawa, A.
PDB entry 3ah2: HA1 subcomponent of botulinum type C progenitor toxin complexed with N-acetylgalactosamine
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-04-13
Authors: Nakamura, T., Tonozuka, T., Ide, A., Yuzawa, T., Oguma, K., Nishikawa, A.
PDB entry 3ah3: Crystal structure of LR5-1, 3-isopropylmalate dehydrogenase created by directed evolution
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-04-13
Authors: Tomita, T., Suzuki, Y., Kuzuyama, T., Nishiyama, M.
PDB entry 3ah4: HA1 subcomponent of botulinum type C progenitor toxin complexed with galactose
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2010-04-13
Authors: Nakamura, T., Tonozuka, T., Ide, A., Yuzawa, T., Oguma, K., Nishikawa, A.
PDB entry 3ah5: Crystal Structure of flavin dependent thymidylate synthase ThyX from helicobacter pylori complexed with FAD and dUMP
Classification: TRANSFERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-04-14
Authors: Zhang, X., Zhang, J., Hu, Y., Zou, Q., Wang, D.
PDB entry 3ah6: Remarkable improvement of the heat stability of CutA1 from E.coli by rational protein designing
Classification: UNKNOWN FUNCTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-04-15
Authors: Matsuura, Y., Tanaka, T., Bagautdinov, B., Kunishima, N., Yutani, K.
PDB entry 3ah7: Crystal structure of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004
Classification: METAL BINDING PROTEIN
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-04-20
Authors: Kumasaka, T., Shimizu, N., Ohmori, D., Iwasaki, T.
PDB entry 3ah8: Structure of heterotrimeric G protein Galpha-q beta gamma in complex with an inhibitor YM-254890
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Bos taurus; Chromobacterium sp.; Mus musculus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-04-20
Authors: Nishimura, A., Kitano, K., Takasaki, J., Taniguchi, M., Mizuno, N., Tago, K., Hakoshima, T., Itoh, H.
PDB entry 3ah9: Crystal structure of (Pro-Pro-Gly)9 at 1.1 A resolution
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2010-04-22
Authors: Okuyama, K., Morimoto, T., Hongo, C., Hosaka, N., Nishino, N.
PDB entry 3aha: Crystal structure of the complex between gp41 fragments N36 and C34 mutant N126K/E137Q
Classification: MEMBRANE PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-04-22
Authors: Izumi, K., Nakamura, S., Nakano, H., Shimura, K., Sakagami, Y., Oishi, S., Uchiyama, S., Ohkubo, T., Kobayashi, Y., Fujii, N., Matsuoka, M., Kodama, E.N.
PDB entry 3ahc: Resting form of Phosphoketolase from Bifidobacterium Breve
Classification: LYASE
Source organism: Bifidobacterium breve
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-04-22
Authors: Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
PDB entry 3ahd: Phosphoketolase from Bifidobacterium Breve complexed with 2-acetyl-thiamine diphosphate
Classification: LYASE
Source organism: Bifidobacterium breve
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-04-22
Authors: Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
PDB entry 3ahe: Phosphoketolase from Bifidobacterium Breve complexed with dihydroxyethyl thiamine diphosphate
Classification: LYASE
Source organism: Bifidobacterium breve
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-04-22
Authors: Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
PDB entry 3ahf: Phosphoketolase from Bifidobacterium Breve complexed with inorganic phosphate
Classification: LYASE
Source organism: Bifidobacterium breve
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-04-22
Authors: Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
PDB entry 3ahg: H64A mutant of Phosphoketolase from Bifidobacterium Breve complexed with a tricyclic ring form of thiamine diphosphate
Classification: LYASE
Source organism: Bifidobacterium breve
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-04-22
Authors: Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
PDB entry 3ahh: H142A mutant of Phosphoketolase from Bifidobacterium Breve complexed with acetyl thiamine diphosphate
Classification: LYASE
Source organism: Bifidobacterium breve
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-04-22
Authors: Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
PDB entry 3ahi: H320A mutant of Phosphoketolase from Bifidobacterium Breve complexed with acetyl thiamine diphosphate
Classification: LYASE
Source organism: Bifidobacterium breve
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-04-22
Authors: Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
PDB entry 3ahj: H553A mutant of Phosphoketolase from Bifidobacterium Breve
Classification: LYASE
Source organism: Bifidobacterium breve
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-04-22
Authors: Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
PDB entry 3ahm: Pz peptidase a
Classification: HYDROLASE
Source organism: Geobacillus sp. MO-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-04-25
Authors: Nakano, H.