LiteFold/PDB huggingface dataset:
PDB entry 8tez: Crystal Structure of Pyridoxal Reductase (PDXI)in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-07
Authors: Donkor, A.K., Safo, M.K., Musayev, F.N.
PDB entry 8tf0: Crystal structure of Grp94 N-terminal domain bound to the purine inhibitor PU-H36
Classification: CHAPERONE
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2023-07-07
Authors: Que, N.L.S., Gewirth, D.T.
PDB entry 8tf1: Crystal Structure of Pyridoxal Reductase (PDXI)in complex with NADPH and Pyridoxal
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-07
Authors: Donkor, A.K., Safo, M.K., Musayev, F.N.
PDB entry 8tf2: Wildtype rabbit TRPV5 into nanodiscs in Apo state
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-07-07
Authors: De Jesus-Perez, J.J., Fluck, E.C., Moiseenkova-Bell, V.Y.
PDB entry 8tf3: Wildtype rabbit TRPV5 into nanodiscs in complex with econazole
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-07-07
Authors: De Jesus-Perez, J.J., Fluck, E.C., Moiseenkova-Bell, V.Y.
PDB entry 8tf4: Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and econazole
Classification: MEMBRANE PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-07-07
Authors: De Jesus-Perez, J.J., Fluck, E.C., Moiseenkova-Bell, V.Y.
PDB entry 8tf5: Crystal structure of orphan G protein-coupled receptor 6, pseudoapo form
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-07
Authors: Barekatain, M., Johansson, L., Lam, J.H., Sadybekov, A.V., Han, G.W., Popov, P., Russo, J., Bliesath, J., Brice, N., Beresford, M., Carlson, L., Saikatendu, K.S., Sun, H., Murphy, S., Monenschein, H., Schiffer, H.H., Lutomski, C., Robinson, C.V., Liu, Z., Hua, T., Katritch, V., Cherezov, V.
PDB entry 8tf7: Apo structure of protein crystal of Tri17
Classification: LIGASE
Source organism: Streptomyces tsukubensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-07-09
Authors: Zhai, R., Zhang, W.
PDB entry 8tf9: Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-IP7, produced upon myo-IP6 phosphorylation by TvI
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-07-09
Authors: Zong, G., Wang, H., Shears, S.B.
PDB entry 8tfa: Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-PP-IP4, produced upon myo-(2OH)-IP5 phosphorylation by TvIPK
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-07-09
Authors: Zong, G., Wang, H., Shears, S.B.
PDB entry 8tfb: Cryo-EM structure of the Methanosarcina mazei apo glutamin synthetase structure: dodecameric form
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-07-09
Authors: Schumacher, M.A.
PDB entry 8tfc: Cryo-EM structure of Methanosarcina mazie glutamine synthetase captured as partial oligomer
Classification: LIGASE
Source organism: Methanosarcina mazei Go1
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2023-07-09
Authors: Schumacher, M.A.
PDB entry 8tfd: Crystal structure of a stem-loop DNA aptamer complexed with SARS-CoV-2 nucleocapsid protein RNA-binding domain
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-07-10
Authors: Esler, M., Belica, C., Shi, K., Aihara, H.
PDB entry 8tfe: Crystal structure of Fab fragment of anti-HCV E2 antibody (CBH-7)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-07-10
Authors: Shahid, S., Mariuzza, R.A.
PDB entry 8tff: PorX with BeF3 phosphate analog
Classification: SIGNALING PROTEIN
Source organism: Flavobacterium johnsoniae UW101
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-07-11
Authors: Saran, A., Zeytuni, N.
PDB entry 8tfg: 1.88A CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS TOPOISOMERASE I
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-07-11
Authors: Tan, K., Tse-Dinh, Y.C.
PDB entry 8tfh: Ricin in complex with Fab JB4
Classification: TOXIN/IMMUNE SYSTEM
Source organism: Mus musculus; Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2023-07-11
Authors: Rudolph, M.J., Mantis, N.
PDB entry 8tfi: tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-07-11
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tfk: Cryo-EM structure of the Methanosarcina mazei glutamine synthetase (GS) with Met-Sox-P and ADP
Classification: LIGASE
Source organism: Methanosarcina mazei Go1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-07-11
Authors: Schumacher, M.A.
PDB entry 8tfl: Ricin in complex with Fab SylH3
Classification: TOXIN
Source organism: Mus musculus; Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-07-11
Authors: Rudolph, M.J., Mantis, N.
PDB entry 8tfm: PorX with Zn (primitive orthorhombic crystal form)
Classification: SIGNALING PROTEIN
Source organism: Flavobacterium johnsoniae UW101
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-07-11
Authors: Saran, A., Zeytuni, N.
PDB entry 8tfn: Structure of anti-TCRvbeta6-5 antibody in complex with the cognate TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-07-11
Authors: Katragadda, M., Servatalab, R., Wirth, J.
PDB entry 8tfo: Structure of MKvar
Classification: TRANSFERASE
Source organism: Ramazzottius varieornatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-11
Authors: Peat, T.S., Newman, J., Esquirol, L., Nebl, T., Scott, C., Vickers, C., Sainsbury, F.
PDB entry 8tfp: Fab from C10-S66K antibody in complex with carfentanil
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-07-11
Authors: Pholcharee, T., Wilson, I.A.
PDB entry 8tfq: Fab from C10-S66K antibody in complex with fentanyl
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-11
Authors: Pholcharee, T., Wilson, I.A.
PDB entry 8tfr: Apo Fab from C10-S66K antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Streptococcus sp. group G
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-07-11
Authors: Pholcharee, T., Wilson, I.A.
PDB entry 8tfs: Crystal structure of the Rhodanese-like domain of Vretifemale_1082 from Volvox reticuliferus
Classification: TRANSFERASE
Source organism: Volvox reticuliferus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-11
Authors: Arbing, M.A., Jonikas, M., Yeates, T.O.
PDB entry 8tft: Fab of O13-1 human IgG1 antibody bound to IgV domain of human TIM-3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-11
Authors: Oganesyan, V.Y., van Dyk, N., Mazor, Y., Yang, C.
PDB entry 8tfu: Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 1
Classification: DNA BINDING PROTEIN
Source organism: Escherichia phage Lambda; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.482 Å
Deposited: 2023-07-11
Authors: Bell, C.E.
PDB entry 8tfv: INSECT DEFENSE PEPTIDE
Classification: antimicrobial
Experimental method: SOLUTION NMR
Deposited: 1998-11-24
Authors: Mandard, N., Sodano, P., Labbe, H., Bonmatin, J.M., Bulet, P., Hetru, C., Ptak, M., Vovelle, F.
PDB entry 8tfw: FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, boronic acid-based compound N34 bound
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-07-12
Authors: Fellner, M.
PDB entry 8tfx: tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 2',5'-ADP
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-12
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tfy: tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with NADP
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-07-12
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tfz: tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with NAD
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2023-07-12
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tg0: Solution NMR structure of the cold shock domain of the Arabidopsis thaliana glycine-rich protein AtGRP2
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2023-07-12
Authors: Pougy, K.C., Almeida, F.C.L., Pinheiro, A.S.
PDB entry 8tg1: Caldicellulosiruptor saccharolyticus periplasmic urea-binding protein
Classification: TRANSPORT PROTEIN
Source organism: Caldicellulosiruptor saccharolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.097 Å
Deposited: 2023-07-12
Authors: Allert, M.J., Kumar, S., Wang, Y., Beese, L.S., Hellinga, H.W.
PDB entry 8tg2: The crystal structure of the post-reactive state of UDP-sugar pyrophosphorylase from Leishmania major in complex with products UDP-Glucose and PPi
Classification: SUGAR BINDING PROTEIN
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-07-12
Authors: Prakash, O., Fuehring, J.I., Baruch, P., Routier, F.H., Fedorov, R.
PDB entry 8tg3: tRNA 2'-phosphotransferase (Tpt1) from Aeropyrum pernix in complex with ADP-ribose-1"" -phosphate
Classification: TRANSFERASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-07-12
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tg4: tRNA 2'-phosphotransferase (Tpt1) from Aeropyrum pernix in complex with ADP-ribose-2""-phosphate and 2'-OH RNA
Classification: TRANSFERASE
Source organism: Aeropyrum pernix; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-07-12
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tg5: tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with branched 2'-PO4 RNA
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-12
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tg6: tRNA 2'-phosphotransferase (Tpt1) from Aeropyrum pernix in complex with sulfate anions
Classification: TRANSFERASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-07-12
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8tg7: Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 2
Classification: DNA BINDING PROTEIN
Source organism: Escherichia phage Lambda; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.775 Å
Deposited: 2023-07-12
Authors: Bell, C.E.
PDB entry 8tg8: Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 3
Classification: DNA BINDING PROTEIN
Source organism: Escherichia phage Lambda; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.576 Å
Deposited: 2023-07-12
Authors: Bell, C.E.
PDB entry 8tg9: Complex of NPR1 ectodomain with ANP plus an allosteric activating antibody, REGN5381
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-07-12
Authors: Franklin, M.C., Romero Hernandez, A.
PDB entry 8tga: Complex of NPR1 ectodomain and REGN5381 Fab in an active-like state with no ANP bound
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2023-07-12
Authors: Franklin, M.C., Romero Hernandez, A.
PDB entry 8tgb: Crystal structure of root lateral formation protein (RLF) b5-domain from Oryza sativa
Classification: OXIDOREDUCTASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-07-12
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Benson, D.R.
PDB entry 8tgc: Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 4
Classification: DNA BINDING PROTEIN
Source organism: Escherichia phage Lambda; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.484 Å
Deposited: 2023-07-12
Authors: Bell, C.E.
PDB entry 8tgd: STX-478, a Mutant-Selective, Allosteric Inhibitor bound to H1047R PI3Kalpha
Classification: TRANSFERASE/TRANSFERSE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.928 Å
Deposited: 2023-07-12
Authors: Hilbert, B., Brooijmans, N., Buckbinder, L., St.Jean Jr., D.J.
PDB entry 8tge: Crystal structure of the Methanosarcina mazei glutamine synthetase in complex with GlnK1
Classification: LYASE
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-12
Authors: Schumacher, M.A.
PDB entry 8tgf: Crystal structure of cEPG5 LIR/LGG-1 complex
Classification: SIGNALING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-07-12
Authors: Cheung, Y.W.S., Yip, C.K.
PDB entry 8tgg: VMAT1 dimer with MPP+ and reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-12
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8tgh: VMAT1 dimer with amphetamine and reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-12
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8tgi: VMAT1 dimer with dopamine and reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-12
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8tgj: VMAT1 dimer in unbound form and with reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-12
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8tgk: VMAT1 dimer with histamine and reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-07-12
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8tgl: VMAT1 dimer with norepinephrine and reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-12
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8tgm: VMAT1 dimer with reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-12
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8tgn: VMAT1 dimer with serotonin and reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-12
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8tgo: Crystal structure of the BG505 triple tandem trimer gp140 HIV-1 Env in complex with PGT124 and 35O22
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 5.75 Å
Deposited: 2023-07-12
Authors: Xian, Y., Yuan, M., Wilson, I.A.
PDB entry 8tgp: Crystal structure of SIRT2 with FAM-PEG4-H4K16(myristoyl) peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-07-12
Authors: Nicely, N.I., Weiser, B.P.
PDB entry 8tgs: The crystal structure of the post-reactive state of UDP-sugar pyrophosphorylase from Leishmania major in complex with product UDP-Glucose and by-product analog VO4 (orthovanadate)
Classification: SUGAR BINDING PROTEIN
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-13
Authors: Prakash, O., Fuehring, J.I., Baruch, P., Routier, F.H., Fedorov, R.
PDB entry 8tgt: Structure of human C4b-binding protein alpha chain CCP domains 1 and 2 in complex with the hypervariable region of group A Streptococcus M68 protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-07-13
Authors: Kolesinski, P., Ghosh, P.
PDB entry 8tgu: Cryo-EM structure of BG505 SOSIP trimer purified via Galanthus nivalis lectin chromatography
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-13
Authors: Parsons, R.J., Pothula, K., Acharya, P.
PDB entry 8tgv: CryoEM structure of Fab HC84.26-HCV E2 complex
Classification: ANTIVIRAL PROTEIN
Source organism: Hepacivirus C; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-07-13
Authors: Shahid, S., Liqun, J., LIu, Y., Hasan, S.S., Mariuzza, R.A.
PDB entry 8tgw: Cryo-EM structure of 1059 SOSIP trimer purified via Galanthus nivalis lectin chromatography
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-13
Authors: Parsons, R.J., Pothula, K., Acharya, P.
PDB entry 8tgx: Crystal structure of C. elegans LGG-1
Classification: SIGNALING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-07-13
Authors: Cheung, Y.W.S., Yip, C.K.
PDB entry 8tgy: Crystal structure of Gdx-Clo from Small Multidrug Resistance family of transporters in complex with guanylurea
Classification: TRANSPORT PROTEIN
Source organism: Clostridia bacterium; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-07-13
Authors: Lucero, R.M., Stockbridge, R.B.
PDB entry 8tgz: CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
Classification: ANTIVIRAL PROTEIN
Source organism: Hepacivirus C; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2023-07-13
Authors: Shahid, S., Liqun, J., Liu, Y., Hasan, S.S., Mariuzza, R.A.
PDB entry 8th1: Crystal Structure of the G3BP1 NTF2-like domain bound to the IDR1 of SARS-CoV-2 nucleocapsid protein D3L mutant
Classification: Hydrolase/Viral Protein
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-13
Authors: Hughes, M.P., Taylor, J.P., Yang, Z.
PDB entry 8th2: Structure of the isoflavene-forming dirigent protein PsPTS2
Classification: PLANT PROTEIN
Source organism: Pisum sativum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-13
Authors: Smith, C.A., Meng, Q., Lewis, N.G., Davin, L.B.
PDB entry 8th3: Structure of AT118-H Nanobody Antagonist in Complex with the Angiotensin II Type I Receptor
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Camelidae; Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-13
Authors: Skiba, M.A., Kruse, A.C.
PDB entry 8th4: Structure of AT118-L Nanobody Antagonist in Complex with the Angiotensin II Type I Receptor and Losartan
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-13
Authors: Skiba, M.A., Kruse, A.C.
PDB entry 8th5: Crystal Structure of the G3BP1 NTF2-like domain bound to the IDR1 of SARS-CoV-2 nucleocapsid protein P13L mutant
Classification: Hydrolase/Viral Protein
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-07-13
Authors: Hughes, M.P., Taylor, J.P., Yang, Z.
PDB entry 8th6: Crystal Structure of the G3BP1 NTF2-like domain bound to USP10 peptide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-07-14
Authors: Hughes, M.P., Taylor, J.P., Yang, Z.
PDB entry 8th7: Crystal Structure of the G3BP1 NTF2-like domain bound to the Caprin1 peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2023-07-14
Authors: Hughes, M.P., Taylor, J.P., Yang, Z.
PDB entry 8th8: Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila
Classification: STRUCTURAL PROTEIN
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.4 Å
Deposited: 2023-07-14
Authors: Ghanaeian, A.G., Bui, K.H.
PDB entry 8th9: Structure of mammalian NEIL2 from Monodelphis domestica in complex with THF-containing DNA
Classification: LYASE
Source organism: Monodelphis domestica; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-07-14
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 8tha: 1TEL, non-compressed, double-helical crystal form
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-07-14
Authors: Smith, C.P., Wilson, E.W., Pedroza Romo, M.J., Averett, J.C., Moody, J.D.
PDB entry 8thb: Structure of the Saccharomyces cerevisiae PCNA clamp unloader Elg1-RFC complex
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-14
Authors: Zheng, F., Yao, Y.N., Georgescu, R., O'Donnell, M.E., Li, H.
PDB entry 8thc: Structure of the Saccharomyces cerevisiae clamp unloader Elg1-RFC bound to a cracked PCNA
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-07-14
Authors: Zheng, F., Yao, Y.N., Georgescu, R., O'Donnell, M.E., Li, H.
PDB entry 8thd: Structure of the Saccharomyces cerevisiae clamp unloader Elg1-RFC bound to PCNA
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-07-14
Authors: Zheng, F., Yao, Y.N., Georgescu, R., O'Donnell, M.E., Li, H.
PDB entry 8the: Cryo-EM structure of Pseudomonas aeruginosa TonB-dependent transporter PhuR in complex with synthetic antibody and heme
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-07-15
Authors: Knejski, P., Erramilli, S.K., Kossiakoff, A.A.
PDB entry 8thf: SARS-CoV-2 BA.1 S-6P-no-RBD
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-07-15
Authors: Bu, F., Li, F., Liu, B.
PDB entry 8thg: Cryo-EM structure of Nav1.7 with RLZ
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-16
Authors: Fan, X., Huang, J., Yan, N.
PDB entry 8thh: Cryo-EM structure of Nav1.7 with LTG
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-07-16
Authors: Fan, X., Huang, J., Yan, N.
PDB entry 8thi: Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Classification: TRANSPORT PROTEIN
Source organism: Haemophilus influenzae Rd KW20
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-07-16
Authors: Davies, J.S., Currie, M.C., Dobson, R.C.J., North, R.A.
PDB entry 8thj: Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Classification: TRANSPORT PROTEIN
Source organism: Haemophilus influenzae Rd KW20
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-07-16
Authors: Davies, J.S., Currie, M.C., Dobson, R.C.J., North, R.A.
PDB entry 8thk: Cryo-EM structure of A61603-bound alpha-1A-adrenergic receptor in complex with heterotrimeric Gq-protein
Classification: SIGNALING PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-07-17
Authors: Su, M., Huang, X.Y.
PDB entry 8thl: Cryo-EM structure of epinephrine-bound alpha-1A-adrenergic receptor in complex with heterotrimeric Gq-protein
Classification: SIGNALING PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-17
Authors: Su, M., Huang, X.Y.
PDB entry 8thm: Beta carbonic anhydrase from the carboxysome of Cyanobium PCC 7001
Classification: PHOTOSYNTHESIS
Source organism: Cyanobium sp. PCC 7001
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-17
Authors: Pulsford, S.B., Jackson, C.J.
PDB entry 8thn: KcsA M96V mutant with Y78ester in High K+
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Streptomyces lividans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-07-17
Authors: Reddi, R., Valiyaveetil, F.I.
PDB entry 8tho: Solution structure of the zinc finger repeat domain of BCL11A (ZnF456)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-07-17
Authors: Viennet, T., Yin, M., Orkin, S.H., Arthanari, H.
PDB entry 8thp: PorX phosphatase null mutant (T271V)
Classification: SIGNALING PROTEIN
Source organism: Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-17
Authors: Saran, A., Zeytuni, N.
PDB entry 8thq: Nonamer RNA bound to hAgo2-PAZ
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2023-07-17
Authors: Pallan, P.S., Harp, J.M., Egli, M.
PDB entry 8thr: Structure of the human vesicular monoamine transporter 2 (VMAT2) bound to tetrabenazine in an occluded conformation
Classification: TRANSPORT PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-07-17
Authors: Dalton, M.P., Coleman, J.A.
PDB entry 8ths: Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA A69T
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-17
Authors: Henderson, J.N., Mills, J.H.
PDB entry 8thu: Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-18
Authors: Abini-Agbomson, S., Armache, K.-J.
PDB entry 8thv: FARFAR-NMR ensemble of HIV-1 TAR with apical loop capturing ground and excited conformational states
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-07-18
Authors: Roy, R., Geng, A., Shi, H., Merriman, D.K., Dethoff, E.A., Salmon, L., Al-Hashimi, H.M.
PDB entry 8thw: Cac1 PIP motif bound to PCNA
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-18
Authors: Veltri, E., Hoitsma, N.M., Dieckman, L.
PDB entry 8thx: Yeast actin A167E mutant wt-like
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2023-07-18
Authors: Volkmann, N., Hanein, D.
PDB entry 8thy: Yeast actin A167E mutant rabbit-like
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2023-07-18
Authors: Volkmann, N., Hanein, D.
PDB entry 8thz: CryoEM structure of neutralizing antibodies CBH-7 and HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
Classification: ANTIVIRAL PROTEIN
Source organism: Hepacivirus C; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-07-18
Authors: Shahid, S., Jiang, L., Liu, Y., Hasan, S.S., Mariuzza, R.A.
PDB entry 8ti0: ATP-1 state of Bcs1 (unsymmetrized)
Classification: TRANSLOCASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2023-07-18
Authors: Zhan, J., Xia, D.
PDB entry 8ti1: Cryo-EM structure of a SUR1/Kir6.2-Q52R ATP-sensitive potassium channel in the presence of PIP2 in the open conformation
Classification: TRANSPORT PROTEIN
Source organism: Mesocricetus auratus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-18
Authors: Driggers, C.M., Shyng, S.-L.
PDB entry 8ti2: Cryo-EM structure of a SUR1/Kir6.2-Q52R ATP-sensitive potassium channel in the presence of PIP2 in the open conformation
Classification: TRANSPORT PROTEIN
Source organism: Mesocricetus auratus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-07-18
Authors: Driggers, C.M., Shyng, S.-L.
PDB entry 8ti3: Yeast actin wild type
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.43 Å
Deposited: 2023-07-19
Authors: Volkmann, N., Hanein, D.
PDB entry 8ti4: monovalent bispecific IgG antibodies through novel electrostatic steering mutations at the CH1-CL interface
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-19
Authors: Oganesyan, V.Y., van Dyk, N., Mazor, Y.
PDB entry 8ti5: Crystal structure of Tyr p 36.0101
Classification: ALLERGEN
Source organism: Tyrophagus putrescentiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-07-19
Authors: O'Malley, A., Sankaran, S., Chruszcz, M.
PDB entry 8ti6: Crystal structure of Tyr p 36.0101
Classification: ALLERGEN
Source organism: Tyrophagus putrescentiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-07-19
Authors: O'Malley, A., Sankaran, S., Chruszcz, M.
PDB entry 8ti7: Crystal structure of profilin from Dermatophagoides pteronyssinus in complex with a poly(L-proline) peptide
Classification: ALLERGEN
Source organism: Dermatophagoides pteronyssinus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.397 Å
Deposited: 2023-07-19
Authors: O'Malley, A., Sankaran, S., Chruszcz, M.
PDB entry 8ti8: CryoEM structure of Shedu from Bacillus cereus
Classification: DNA BINDING PROTEIN
Source organism: Bacillus cereus B4264
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-19
Authors: Gu, Y., Corbett, K.
PDB entry 8ti9: CryoEM structure of octamer assembly of Shedu nuclease domain from Bacillus cereus
Classification: DNA BINDING PROTEIN
Source organism: Bacillus cereus B4264
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-07-19
Authors: Gu, Y., Corbett, K.
PDB entry 8tia: CryoEM structure of locally-refined tetramer of Shedu nuclease domain from Bacillus cereus
Classification: DNA BINDING PROTEIN
Source organism: Bacillus cereus B4264
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-07-19
Authors: Gu, Y., Corbett, K.
PDB entry 8tib: Cryo-EM of tri-pilus from S. islandicus REY15A
Classification: PROTEIN FIBRIL
Source organism: Sulfolobus islandicus REY15A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-07-19
Authors: Eastep, G.N., Liu, J., Rich-New, S.T., Egelman, E.H., Krupovic, M., Wang, F.
PDB entry 8tic: Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-07-19
Authors: Sudom, A., Min, X.
PDB entry 8tid: Combined linker domain of N-DRC and associated proteins Tetrahymena
Classification: STRUCTURAL PROTEIN
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-19
Authors: Ghanaeian, A.G., Majhi, S.M., McCaffrey, C.M., Nami, B.N., Black, C.B., Yang, S.K., Legal, T.L., Papoulas, O.P., Janowska, M.J., Valente-Paterno, M.V., Marcotte, E.M., Wloga, D.W., Bui, K.H.
PDB entry 8tie: Double nuclear outer ring of Nup84-complexes from the yeast NPC
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.1 Å
Deposited: 2023-07-19
Authors: Akey, C.W., Echeverria, I., Ouch, C., Fernandez-Martinez, J., Rout, M.P.
PDB entry 8tif: Cryo-EM of mono-pilus from S. islandicus REY15A
Classification: PROTEIN FIBRIL
Source organism: Sulfolobus islandicus REY15A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2023-07-19
Authors: Eastep, G.N., Liu, J., Rich-New, S.T., Egelman, E.H., Krupovic, M., Wang, F.
PDB entry 8tii: Human ACKR3 phosphorylated by GRK2 in complex with Arrestin2 in nanodisc
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-19
Authors: Chen, Q., Tesmer, J.J.G.
PDB entry 8til: Human ACKR3 phosphorylated by GRK5 in complex with Arrestin3 reconstructed without receptor/micelle
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-19
Authors: Chen, Q., Tesmer, J.J.G.
PDB entry 8tim: TRIOSE PHOSPHATE ISOMERASE
Classification: ISOMERASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1998-08-25
Authors: Artymiuk, P.J., Taylor, W.R., Phillips, D.C.
PDB entry 8tin: Human ACKR3 phosphorylated by GRK2 in complex with Arrestin3 reconstructed without receptor/micelle
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-07-19
Authors: Chen, Q., Tesmer, J.J.G.
PDB entry 8tio: Human ACKR3 with C tail extended by 12 glycines phosphorylated by GRK5 in complex with Arrestin2 reconstructed without receptor/micelle
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-19
Authors: Chen, Q., Tesmer, J.J.G.
PDB entry 8tip: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with blunt ends and 5' terminal phosphates.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Slaughter, C.K., Shrestha, R., Snow, C.D.
PDB entry 8tiq: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with blunt ends and 3' terminal phosphates.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Slaughter, C.K., Shrestha, R., Snow, C.D.
PDB entry 8tir: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 5' terminal phosphates.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tis: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 3' terminal phosphates.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tit: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 2 sticky base overhangs and no terminal phosphates.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tiu: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 2 sticky base overhangs and 3' terminal phosphates.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tiv: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with blunt ends and 5' terminal phosphates and crosslinked with EDC.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tiw: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with blunt ends and 3' terminal phosphates and crosslinked with EDC.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tix: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 5' terminal phosphates and crosslinked with EDC.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tiy: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 3' terminal phosphates and crosslinked with EDC.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tiz: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 2 sticky base overhangs and no terminal phosphates and crosslinked with EDC.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tj0: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 2 sticky base overhangs and 5' terminal phosphates and crosslinked with EDC.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Slaughter, C.K., Shrestha, R., Snow, C.D.
PDB entry 8tj1: Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 2 sticky base overhangs and 3' terminal phosphates and crosslinked with EDC.
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-07-20
Authors: Orun, A.R., Shields, E.T., Shrestha, R., Slaughter, C.K., Snow, C.D.
PDB entry 8tj2: CryoEM structure of Myxococcus xanthus type IV pilus
Classification: CELL ADHESION
Source organism: Myxococcus xanthus DK 1622
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-20
Authors: Zheng, W., Egelman, E.H.
PDB entry 8tj3: Structural basis of peptidoglycan synthesis by E. coli RodA-PBP2 complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-20
Authors: Nygaard, R., Mancia, F.
PDB entry 8tj4: CRYSTAL STRUCTURE OF THE A/Bangkok/1/1979(H3N2) INFLUENZA VIRUS HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLNLN
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-20
Authors: Wu, N.C., Zhu, X., Wilson, I.A.
PDB entry 8tj5: Inner spoke ring of the yeast NPC
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2023-07-20
Authors: Akey, C.W., Echeverria, I., Ouch, C., Fernandez-Martinez, J., Rout, M.P.
PDB entry 8tj6: CRYSTAL STRUCTURE OF THE A/Beijing/353/1989(H3N2) INFLUENZA VIRUS HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLN
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-07-20
Authors: Wu, N.C., Zhu, X., Wilson, I.A.
PDB entry 8tj7: CRYSTAL STRUCTURE OF THE A/Shandong/9/1993(H3N2) INFLUENZA VIRUS HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLNLN
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-07-20
Authors: Wu, N.C., Zhu, X., Wilson, I.A.
PDB entry 8tj8: CRYSTAL STRUCTURE OF THE A/Moscow/10/1999(H3N2) INFLUENZA VIRUS HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLNLN
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2023-07-20
Authors: Wu, N.C., Zhu, X., Wilson, I.A.
PDB entry 8tj9: CRYSTAL STRUCTURE OF THE A/Michigan/15/2014(H3N2) INFLUENZA VIRUS HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLNLN
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-20
Authors: Wu, N.C., Zhu, X., Wilson, I.A.
PDB entry 8tja: CRYSTAL STRUCTURE OF THE A/Ecuador/1374/2016(H3N2) INFLUENZA VIRUS HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLNLN
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-07-20
Authors: Wu, N.C., Zhu, X., Wilson, I.A.
PDB entry 8tjb: CRYSTAL STRUCTURE OF THE A/Texas/73/2017(H3N2) INFLUENZA VIRUS HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLNLN
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-07-20
Authors: Wu, N.C., Zhu, X., Wilson, I.A.
PDB entry 8tjc: Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 8a
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-20
Authors: Sudom, A., Min, X.
PDB entry 8tje: Zophobas morio black wasting virus strain OR-molitor virion structure
Classification: VIRUS/DNA
Source organism: Tenebrio molitor
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-20
Authors: Penzes, J.J., Kaelber, J.T.
PDB entry 8tjf: monovalent bispecific IgG antibodies through novel electrostatic steering mutations at the CH1-CL interface
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-21
Authors: Oganesyan, V.Y., van Dyk, N., Mazor, Y., Chiang, C.
PDB entry 8tjg: Structure of Nei2 from Mycobacterium smegmatis in complex with Zn2+
Classification: HYDROLASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-07-21
Authors: Warren, G., Shuman, S.
PDB entry 8tjh: TGP-E, extreme thermostable green fluorescent protein (TGP) with Q66E mutation
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-21
Authors: Anderson, M.R., DeVore, N.M.
PDB entry 8tji: SAM-dependent methyltransferase RedM, apo
Classification: BIOSYNTHETIC PROTEIN
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-07-22
Authors: Daniel-Ivad, P., Ryan, K.S.
PDB entry 8tjj: SAM-dependent methyltransferase RedM bound to SAM
Classification: BIOSYNTHETIC PROTEIN
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-07-22
Authors: Daniel-Ivad, P., Ryan, K.S.
PDB entry 8tjk: SAM-dependent methyltransferase RedM bound to SAH
Classification: BIOSYNTHETIC PROTEIN
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-07-22
Authors: Daniel-Ivad, P., Ryan, K.S.