LiteFold/PDB huggingface dataset:
PDB entry 6dyb: Metal-free structure of the engineered cyt cb562 variant, CH3
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyc: Co(II)-bound structure of the engineered cyt cb562 variant, CH3
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyd: Cu(II)-bound structure of the engineered cyt cb562 variant, CH3
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.724 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dye: Fe(II)-bound structure of the engineered cyt cb562 variant, CH3
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyf: Cu(II)-bound structure of the engineered cyt cb562 variant, CH3Y
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyg: Fe(II)-bound structure of the engineered cyt cb562 variant, CH3Y
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyh: Vanadyl-bound structure of the engineered cyt cb562 variant, CH3Y
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyi: Co(II)-bound structure of the engineered cyt cb562 variant, H3
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.964 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyj: Iron-bound structure of the engineered cyt b562 variant, CH3Y*
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyk: Iron- and Nitric Oxide-bound structure of the engineered cyt b562 variant, CH3Y*
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.955 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dyl: Vanadyl-bound structure of the engineered cyt b562 variant, CH3Y*
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.691 Å
Deposited: 2018-07-01
Authors: Tezcan, F.A., Rittle, J.
PDB entry 6dym: C-terminal condensation domain of Ebony
Classification: BIOSYNTHETIC PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2018-07-02
Authors: Izore, T., Tailhades, J., Hansen, M.H., Kaczmarski, J.A., Jackson, C.J., Cryle, M.J.
PDB entry 6dyn: C-terminal condensation domain of Ebony in complex with Histamine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.102 Å
Deposited: 2018-07-02
Authors: Izore, T., Tailhades, J., Hansen, M.H., Kaczmarski, J.A., Jackson, C.J., Cryle, M.J.
PDB entry 6dyo: C-terminal condensation domain of Ebony in complex with L-Dopamine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2018-07-02
Authors: Izore, T., Tailhades, J., Hansen, M.H., Kaczmarski, J.A., Jackson, C.J., Cryle, M.J.
PDB entry 6dyr: C-terminal condensation domain of Ebony in complex with Carcinine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2018-07-02
Authors: Izore, T., Tailhades, J., Hansen, M.H., Kaczmarski, J.A., Jackson, C.J., Cryle, M.J.
PDB entry 6dys: C-terminal condensation domain of Ebony in complex with beta-alanyl-dopamine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2018-07-02
Authors: Izore, T., Tailhades, J., Hansen, M.H., Kaczmarski, J.A., Jackson, C.J., Cryle, M.J.
PDB entry 6dyt: Citrobacter freundii tyrosine phenol-lyase F448A mutant complexed with L-alanine
Classification: LYASE
Source organism: Citrobacter freundii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2018-07-02
Authors: Phillips, R.S.
PDB entry 6dyu: Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-((prop-2-yn-1-ylthio)methyl)pyrrolidin-3-ol
Classification: HYDROLASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2018-07-02
Authors: Harijan, R.K., Ducati, R.G., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 6dyv: Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-((pent-4-yn-1-ylthio)methyl)pyrrolidin-3-ol
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2018-07-02
Authors: Harijan, R.K., Ducati, R.G., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 6dyw: Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-(((3-(1-benzyl-1H-1,2,3-triazol-4-yl)propyl)thio)methyl)pyrrolidin-3-ol
Classification: HYDROLASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2018-07-02
Authors: Harijan, R.K., Ducati, R.G., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 6dyx: Structure of VHH R419 isolated from a pre-immune phage display library
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2018-07-02
Authors: Brooks, C.L.
PDB entry 6dyy: Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-(((3-(1-butyl-1H-1,2,3-triazol-4-yl)propyl)thio)methyl)pyrrolidin-3-ol
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2018-07-02
Authors: Harijan, R.K., Ducati, R.G., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 6dyz: Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-((prop-2-yn-1-ylthio)methyl)pyrrolidin-3-ol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2018-07-02
Authors: Harijan, R.K., Ducati, R.G., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 6dz0: Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-((pent-4-yn-1-ylthio)methyl)pyrrolidin-3-ol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2018-07-02
Authors: Harijan, R.K., Ducati, R.G., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 6dz1: Studies of Ion Transport in K+ Channels
Classification: MEMBRANE PROTEIN
Source organism: Bacillus cereus BDRD-Cer4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2018-07-02
Authors: Langan, P.S., Vandavasi, V.G., Weiss, K.L., Wagner, A., Duman, R., El Omari, K., Afonine, P.V., Coates, L.
PDB entry 6dz2: Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-(((3-(1-benzyl-1H-1,2,3-triazol-4-yl)propyl)thio)methyl)pyrrolidin-3-ol
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2018-07-02
Authors: Harijan, R.K., Ducati, R.G., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 6dz3: Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-(((3-(1-butyl-1H-1,2,3-triazol-4-yl)propyl)thio)methyl)pyrrolidin-3-ol
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2018-07-02
Authors: Harijan, R.K., Ducati, R.G., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 6dz4: Crystal structure of Salmonella typhimurium Tryptophan Synthase with sodium ion at the metal coordination site and (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine at the beta-site
Classification: LYASE/LYASE Inhibitor
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2018-07-02
Authors: Hilario, E., Dunn, M.F., Mueller, L.J., Fan, L.
PDB entry 6dz5: Citrobacter freundii tyrosine phenol-lyase F448A mutant complexed with L-alanine
Classification: LYASE
Source organism: Citrobacter freundii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2018-07-03
Authors: Phillips, R.S.
PDB entry 6dz6: Structure of the Orthorhombic (Orthrhmb) Crystal Form of Human Apolipoprotein C1
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2018-07-03
Authors: McPherson, A.
PDB entry 6dz7: afTMEM16 reconstituted in nanodiscs in the absence of Ca2+
Classification: LIPID TRANSPORT
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2018-07-03
Authors: Falzone, M.E., Accardi, A.
PDB entry 6dz8: Crystal structure of S. aureus penicillin binding protein 4 (PBP4) mutant (S75C)
Classification: HYDROLASE
Source organism: Staphylococcus aureus (strain COL)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2018-07-03
Authors: Alexander, J.A.N., Strynadka, N.C.J.
PDB entry 6dz9: Solution structure of Rbfox2 RRM mimetic peptide CPfox2
Classification: RNA BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2018-07-03
Authors: Sun, Y.-T., Shortridge, M.D., Varani, G.
PDB entry 6dza: Solution structure of Rbfox2 RRM mimetic peptide CPfox4
Classification: RNA BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2018-07-03
Authors: Sun, Y.-T., Shortridge, M.D., Varani, G.
PDB entry 6dzb: Solution structure of Rbfox2 RRM mimetic peptide CPfox5
Classification: RNA BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2018-07-03
Authors: Sun, Y.-T., Varani, G.
PDB entry 6dzc: Solution structure of Rbfox2 RRM mimetic peptide CPfox6
Classification: RNA BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2018-07-03
Authors: Sun, Y.-T., Varani, G.
PDB entry 6dzd: Crystal structure of Bacillus licheniformis hypothetical protein YfiH
Classification: UNKNOWN FUNCTION
Source organism: Bacillus licheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2018-07-03
Authors: Almeida, L.R., Grejo, M.P., Mulinari, E.J., Santos, J.C., Camargo, S., Bernardes, A., Muniz, J.R.C.
PDB entry 6dze: Solution structure of Rbfox2 RRM mimetic peptide CPfox7
Classification: RNA BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2018-07-03
Authors: Sun, Y.-T., Varani, G.
PDB entry 6dzf: Orthorhombic trypsin cryocooled to 100 K with 20% xylose as cryoprotectant
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-07-03
Authors: Juers, D.H.
PDB entry 6dzg: Crystal structure of polyphosphate kinase 2 class I (SMc02148) in complex with ADP
Classification: TRANSFERASE
Source organism: Rhizobium meliloti (strain 1021)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2018-07-03
Authors: Nocek, B., Joachimiak, A., Ruszkowski, M., Midwest Center for Structural Genomics (MCSG)
PDB entry 6dzh: HRAS G13D bound to GDP (H13GDP)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2018-07-04
Authors: Johnson, C.W., Mattos, C.
PDB entry 6dzi: Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Classification: RIBOSOME
Source organism: Mycobacterium smegmatis; Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155); Mycobacterium smegmatis str. MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2018-07-05
Authors: Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
PDB entry 6dzk: Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
Classification: RIBOSOME
Source organism: Mycobacterium smegmatis; Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155); Mycobacterium smegmatis str. MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2018-07-05
Authors: Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
PDB entry 6dzl: Ebola virus Makona variant GP (mucin-deleted) in complex with pan-ebolavirus human antibody ADI-15878 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Zaire ebolavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2018-07-05
Authors: Murin, C.D., Ward, A.B.
PDB entry 6dzm: Bundibugyo virus GP (mucin-deleted) in complex with pan-ebolavirus human antibody ADI-15878 Fab
Classification: VIRAL PROTEIN
Source organism: Bundibugyo ebolavirus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.29 Å
Deposited: 2018-07-05
Authors: Murin, C.D., Ward, A.B.
PDB entry 6dzn: Pan-ebolavirus human antibody ADI-15878 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2018-07-05
Authors: Murin, C.D., Ward, A.B., Bruhn, J.F., Stanfield, R.
PDB entry 6dzo: Crystal structure of Salmonella typhimurium Tryptophan Synthase mutant beta-Q114A with 2-({[4-(trifluoromethoxy)phenyl]sulfonyl}amino)ethyl dihydrogen phosphate (F9F) at the alpha-site, Cesium ion at the metal coordination site, and (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine at the beta-site
Classification: LYASE/LYASE Inhibitor
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2018-07-05
Authors: Hilario, E., Dunn, M.F., Mueller, L.J., Fan, L.
PDB entry 6dzp: Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
Classification: RIBOSOME
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155); Mycobacterium smegmatis str. MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2018-07-05
Authors: Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
PDB entry 6dzq: The N-terminal domain of PA endonuclease from the influenza H1N1 virus in complex with 3-hydroxy-6-methyl-4-oxo-4H-pyran-2-carboxylic acid
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2018-07-05
Authors: Dick, B.L., Morrison, C.N., Cohen, S.M.
PDB entry 6dzr: Crystal structure of h38C2 K99R mutation
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-07-05
Authors: Park, H., Rader, C.
PDB entry 6dzs: Mycobacterial homoserine dehydrogenase ThrA in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2018-07-05
Authors: Chaton, C.T., Rodriguez, E.S., Korotkov, K.V.
PDB entry 6dzt: Cryo-EM structure of nucleosome in complex with a single chain antibody fragment
Classification: NUCLEAR PROTEIN
Source organism: Drosophila melanogaster; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2018-07-05
Authors: Yadav, K.N.S., Zhou, B.-R.
PDB entry 6dzu: Mechanism of cellular recognition by PCV2
Classification: VIRUS LIKE PARTICLE
Source organism: Porcine circovirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2018-07-05
Authors: Khayat, R., Dhindwal, S.
PDB entry 6dzv: Wild type human serotonin transporter in complex with 15B8 Fab bound to ibogaine in occluded conformation
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2018-07-05
Authors: Coleman, J.A., Yang, D., Gouaux, E.
PDB entry 6dzw: Cryo-EM structure of the ts2-inactive human serotonin transporter in complex with paroxetine and 15B8 Fab and 8B6 ScFv
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2018-07-05
Authors: Coleman, J.A., Yang, D., Gouaux, E.
PDB entry 6dzx: Crystal structure of the N. meningitides methionine-binding protein in its D-methionine bound conformation.
Classification: PROTEIN BINDING
Source organism: Neisseria meningitidis alpha153
Experimental method: X-RAY DIFFRACTION
Resolution: 1.678 Å
Deposited: 2018-07-05
Authors: Nguyen, P.T., Lai, J.Y., Kaiser, J.T., Rees, D.C.
PDB entry 6dzy: Cryo-EM structure of the ts2-active human serotonin transporter in complex with 15B8 Fab and 8B6 ScFv bound to ibogaine
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2018-07-05
Authors: Coleman, J.A., Yang, D., Gouaux, E.
PDB entry 6dzz: Cryo-EM Structure of the wild-type human serotonin transporter in complex with ibogaine and 15B8 Fab in the inward conformation
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2018-07-05
Authors: Yang, D., Coleman, J.A., Gouaux, E.
PDB entry 6e00: Structure of a N-Me-p-iodo-D-Phe1,N-Me-D-Gln4,Lys10-teixobactin analogue
Classification: ANTIBIOTIC
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-07-05
Authors: Nowick, J.S., Yang, H., Wierzbicki, M.
PDB entry 6e02: WT swMb-MeNO
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2018-07-05
Authors: Herrera, V.E.
PDB entry 6e03: sperm whale myoglobin nitrosoethane adduct
Classification: OXYGEN TRANSPORT
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2018-07-05
Authors: Herrera, V.E.
PDB entry 6e04: sperm whale myoglobin 1-nitrosopropane
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-07-06
Authors: Herrera, V.E.
PDB entry 6e05: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine triphosphate solved by precipitant-ligand exchange (crystals grown in sulfate precipitant)
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2018-07-06
Authors: Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.
PDB entry 6e06: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine triphosphate solved by precipitant-ligand exchange (crystals grown in citrate precipitant)
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2018-07-06
Authors: Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.
PDB entry 6e07: Crystal structure of Canton G6PD in complex with structural NADP
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2018-07-06
Authors: Rahighi, S., Mochly-Rosen, D., Wakatsuki, S.
PDB entry 6e08: Crystal structure of G6PD in complex with structural NADP
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2018-07-06
Authors: Rahighi, S., Mochly Rosen, D., Wakatsuki, S.
PDB entry 6e09: Crystal Structure of Helicobacter pylori TlpA Chemoreceptor Ligand Binding Domain
Classification: SIGNALING PROTEIN
Source organism: Helicobacter pylori SS1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2018-07-06
Authors: Remington, S.J., Guillemin, K., Sweeney, E., Perkins, A.
PDB entry 6e0a: Crystal Structure of Helicobacter pylori TlpA Chemoreceptor Ligand Binding Domain
Classification: SIGNALING PROTEIN
Source organism: Helicobacter pylori SS1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2018-07-06
Authors: Remington, S.J., Guillemin, K., Sweeney, E., Perkins, A.
PDB entry 6e0b: Plasmodium falciparum dihydroorotate dehydrogenase C276F mutant bound with triazolopyrimidine-based inhibitor DSM1
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2018-07-06
Authors: Tomchick, D.R., Phillips, M.A., Deng, X.
PDB entry 6e0c: Cryo-EM structure of the CENP-A nucleosome (W601) in complex with a single chain antibody fragment
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2018-07-06
Authors: Yadav, K.N.S., Zhou, B.-R.
PDB entry 6e0d: X-ray structure of a complex of thaumatin with xylene cyanol
Classification: PLANT PROTEIN/ANTIBIOTIC
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2018-07-06
Authors: McPherson, A.
PDB entry 6e0e: Crystal structure of Glucokinase in complex with compound 6
Classification: Transferase/Transferase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2018-07-06
Authors: Hinklin, R.J., Baer, B.R., Boyd, S.A., Chicarelli, M.D., Condroski, K.R., DeWolf, W.E., Fischer, J., Frank, M., Hingorani, G.P., Lee, P.A., Neitzel, N.A., Pratt, S.A., Singh, A., Sullivan, F.X., Turner, T., Voegtli, W.C., Wallace, E.M., Williams, L., Aicher, T.D.
PDB entry 6e0f: Mitochondrial peroxiredoxin from Leishmania infantum in complex with unfolding client protein after heat stress
Classification: CHAPERONE
Source organism: Leishmania infantum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2018-07-06
Authors: Teixeira, F., Tse, E., Makepeace, K.A.T., Borchers, C.H., Castro, H., Tomas, A.M., Poole, L.B., Southworth, D.R., Jakob, U.
PDB entry 6e0g: Mitochondrial peroxiredoxin from Leishmania infantum after heat stress without unfolding client protein
Classification: CHAPERONE
Source organism: Leishmania infantum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2018-07-06
Authors: Teixeira, F., Tse, E., Makepeace, K.A.T., Borchers, C.H., Castro, H., Tomas, A.M., Poole, L.B., Southworth, D.R., Jakob, U.
PDB entry 6e0h: PDB: afTMEM16 reconstituted in nanodiscs in the presence of Ca2+
Classification: LIPID TRANSPORT
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2018-07-06
Authors: Falzone, M.E., Accardi, A.
PDB entry 6e0i: Crystal structure of Glucokinase in complex with compound 72
Classification: Transferase/Transferase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2018-07-06
Authors: Hinklin, R.J., Baer, B.R., Boyd, S.A., Chicarelli, M.D., Condroski, K.R., DeWolf, W.E., Fischer, J., Frank, M., Hingorani, G.P., Lee, P.A., Neitzel, N.A., Pratt, S.A., Singh, A., Sullivan, F.X., Turner, T., Voegtli, W.C., Wallace, E.M., Williams, L., Aicher, T.D.
PDB entry 6e0k: Structure of Rhodothermus marinus CdnE c-UMP-AMP synthase
Classification: TRANSFERASE
Source organism: Rhodothermus marinus SG0.5JP17-172
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2018-07-06
Authors: Eaglesham, J.B., Whiteley, A.T., de Oliveira Mann, C.C., Morehouse, B.R., Nieminen, E.A., King, D.S., Lee, A.S.Y., Mekalanos, J.J., Kranzusch, P.J.
PDB entry 6e0l: Structure of Rhodothermus marinus CdnE c-UMP-AMP synthase with Apcpp and Upnpp
Classification: TRANSFERASE
Source organism: Rhodothermus marinus SG0.5JP17-172
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2018-07-06
Authors: Eaglesham, J.B., Whiteley, A.T., de Oliveira Mann, C.C., Morehouse, B.R., Nieminen, E.A., King, D.S., Lee, A.S.Y., Mekalanos, J.J., Kranzusch, P.J.
PDB entry 6e0m: Structure of Elizabethkingia meningoseptica CdnE cyclic dinucleotide synthase
Classification: TRANSFERASE
Source organism: Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2018-07-06
Authors: Eaglesham, J.B., Whiteley, A.T., de Oliveira Mann, C.C., Morehouse, B.R., Nieminen, E.A., King, D.S., Lee, A.S.Y., Mekalanos, J.J., Kranzusch, P.J.
PDB entry 6e0n: Structure of Elizabethkingia meningoseptica CdnE cyclic dinucleotide synthase with GTP and Apcpp
Classification: TRANSFERASE
Source organism: Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2018-07-06
Authors: Eaglesham, J.B., Whiteley, A.T., de Oliveira Mann, C.C., Morehouse, B.R., Nieminen, E.A., King, D.S., Lee, A.S.Y., Mekalanos, J.J., Kranzusch, P.J.
PDB entry 6e0o: Structure of Elizabethkingia meningoseptica CdnE cyclic dinucleotide synthase with pppA[3'-5']pA
Classification: TRANSFERASE/RNA
Source organism: Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2018-07-06
Authors: Eaglesham, J.B., Whiteley, A.T., de Oliveira Mann, C.C., Morehouse, B.R., Nieminen, E.A., King, D.S., Lee, A.S.Y., Mekalanos, J.J., Kranzusch, P.J.
PDB entry 6e0p: Cryo-EM structure of the centromeric nucleosome (Native alpha satellite DNA) in complex with a single chain antibody fragment
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2018-07-06
Authors: Yadav, K.N.S., Zhou, B.-R.
PDB entry 6e0q: The N-terminal domain of PA endonuclease from the influenza H1N1 virus in complex with 4,6-dihydroxy-2-methyl-5-oxocyclohepta-1,3,6-triene-1-carboxylic acid
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2018-07-06
Authors: Dick, B.L., Morrison, C.N., Cohen, S.M.
PDB entry 6e0r: hALK in complex with compound 7 N-((1S)-1-(5-fluoropyridin-2-yl)ethyl)-1-(5-methyl-1H-pyrazol-3-yl)-3-(oxetan-3-ylsulfonyl)-1H-pyrrolo[2,3-b]pyridin-6-amine
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.303 Å
Deposited: 2018-07-06
Authors: Lane, W., Saikatendu, K.
PDB entry 6e0s: Crystal structure of MEM-A1, a subclass B3 metallo-beta-lactamase isolated from a soil metagenome library
Classification: HYDROLASE
Source organism: soil metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2018-07-06
Authors: Stogios, P.J., Skarina, T., Lau, C., Topp, E., Savchenko, A., Joachimiak, A., Satchell, K.J., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6e0t: C-terminal domain of Fission Yeast OFD1
Classification: CYTOSOLIC PROTEIN
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2018-07-06
Authors: Bianchet, M.A., Amzel, L.M., Espenshade, P.J., Yeh, T.
PDB entry 6e0u: Staphylococcus pseudintermedius exfoliative toxin EXI
Classification: HYDROLASE, TOXIN
Source organism: Staphylococcus pseudintermedius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2018-07-06
Authors: Boone, C.D., Laganowsky, A.
PDB entry 6e0v: Apo crystal structure of the colanidase tailspike protein gp150 of Phage Phi92
Classification: HYDROLASE
Source organism: Enterobacteria phage phi92
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2018-07-07
Authors: Leiman, P.G., Browning, C., Gerardy-Schahn, R., Shneider, M.M., Plattner, M., Schwarzer, D.
PDB entry 6e0w: Crystal structure of the colanidase tailspike protein gp150 of Phage Phi92 complexed with one repeating unit of colanic acid
Classification: HYDROLASE
Source organism: Enterobacteria phage phi92
Experimental method: X-RAY DIFFRACTION
Resolution: 1.803 Å
Deposited: 2018-07-07
Authors: Plattner, M., Browning, C., Gerardy-Schahn, R., Shneider, M.M., Leiman, P.G., Schwarzer, D.
PDB entry 6e0x: A131E mutant of cyt P460 of Nitrosomonas sp. AL212
Classification: METAL BINDING PROTEIN
Source organism: Nitrosomonas sp. AL212
Experimental method: X-RAY DIFFRACTION
Resolution: 1.974 Å
Deposited: 2018-07-07
Authors: Smith, M., Lancaster, K.
PDB entry 6e0y: A131Q mutant of cyt P460 of Nitrosomonas sp. AL212 with bound NH2OH
Classification: METAL BINDING PROTEIN
Source organism: Nitrosomonas sp. AL212
Experimental method: X-RAY DIFFRACTION
Resolution: 2.257 Å
Deposited: 2018-07-07
Authors: Smith, M., Lancaster, K.
PDB entry 6e0z: A131Q mutant of cyt P460 of Nitrosomonas sp. AL212
Classification: METAL BINDING PROTEIN
Source organism: Nitrosomonas sp. AL212
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2018-07-07
Authors: Smith, M., Lancaster, K.
PDB entry 6e10: PTEX Core Complex in the Engaged (Extended) State
Classification: PROTEIN TRANSPORT
Source organism: Plasmodium falciparum; Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2018-07-08
Authors: Ho, C., Lai, M., Zhou, Z.H.
PDB entry 6e11: PTEX Core Complex in the Resetting (Compact) State
Classification: PROTEIN TRANSPORT
Source organism: Plasmodium falciparum (isolate 3D7); Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å
Deposited: 2018-07-08
Authors: Ho, C., Lai, M., Zhou, Z.H.
PDB entry 6e12: Crystal Structure of the Alr8543 protein in complex with Oleic Acid and magnesium ion from Nostoc sp. PCC 7120, Northeast Structural Genomics Consortium Target NsR141
Classification: LIPID BINDING PROTEIN
Source organism: Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-07-09
Authors: Forouhar, F., Neely, H., Seetharaman, J., Xiao, R., Ciccosanti, C., Patel, D., Belote, R.L., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 6e13: Pseudomonas putida PqqB with a non-physiological zinc at the active site binds the substrate mimic, 5-cysteinyl-3,4-dihydroxyphenylalanine (5-Cys-DOPA), non-specifically but supports the proposed function of the enzyme in pyrroloquinoline quinone biosynthesis.
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.349 Å
Deposited: 2018-07-09
Authors: Evans III, R.L., Wilmot, C.M.
PDB entry 6e14: Handover mechanism of the growing pilus by the bacterial outer membrane usher FimD
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2018-07-09
Authors: Du, M., Yuan, Z., Yu, H., Henderson, N., Sarowar, S., Zhao, G., Werneburg, G.T., Thanassi, D.G., Li, H.
PDB entry 6e15: Handover mechanism of the growing pilus by the bacterial outer membrane usher FimD
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2018-07-09
Authors: Du, M., Yuan, Z., Yu, H., Henderson, N., Sarowar, S., Zhao, G., Werneburg, G.T., Thanassi, D.G., Li, H.
PDB entry 6e16: Ternary structure of c-Myc-TBP-TAF1
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-07-09
Authors: Wei, Y., Dong, A., Sunnerhagen, M., Penn, L., Tong, Y., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)
PDB entry 6e17: A131E mutant of cyt P460 of Nitrosomonas sp. AL212 with NO bound
Classification: METAL BINDING PROTEIN
Source organism: Nitrosomonas sp. AL212
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2018-07-09
Authors: Smith, M., Lancaster, K.
PDB entry 6e18: Crystal structure of Chlamydomonas reinhardtii HAP2 ectodomain provides structural insights of functional loops in green algae.
Classification: MEMBRANE PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2018-07-09
Authors: Baquero, E., Legrand, P., Rey, F.A.
PDB entry 6e1a: Menin bound to M-89
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2018-07-09
Authors: Stuckey, J.A.
PDB entry 6e1c: Crystal structure of a MauG-like protein associated with microbial copper homeostasis
Classification: METAL BINDING PROTEIN
Source organism: Methylosinus trichosporium OB3b
Experimental method: X-RAY DIFFRACTION
Resolution: 2.617 Å
Deposited: 2018-07-09
Authors: Dassama, L.M.K., Rosenzweig, A.C.
PDB entry 6e1f: Crystal structure of the SWIRM domain of human histone lysine-specific demethylase LSD1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2018-07-09
Authors: Luka, Z., Pakhomova, S., Reiter, N.J.
PDB entry 6e1h: Structure of 2:1 human Ptch1-Shh-N complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2018-07-09
Authors: Qi, X., Li, X.
PDB entry 6e1i: HLA-A*0201 single chain trimer with murine H2K alpha 3 domain and HPV.16 E7 peptide YMLDLQPET
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2018-07-09
Authors: Finton, K.A.K., Rusnac, D.V.
PDB entry 6e1j: Crystal Structure of Methylthioalkylmalate Synthase (BjuMAM1.1) from Brassica juncea
Classification: PLANT PROTEIN
Source organism: Brassica juncea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.096 Å
Deposited: 2018-07-09
Authors: Lee, S.G., Jez, J.M.
PDB entry 6e1k: Structure of AtTPC1(DDE) reconstituted in saposin A with cat06 Fab
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2018-07-10
Authors: Kintzer, A.F., Green, E.M., Cheng, Y., Stroud, R.M.
PDB entry 6e1l: GRN3Ala
Classification: CYTOKINE
Experimental method: SOLUTION NMR
Deposited: 2018-07-10
Authors: Dastpeyman, M., Bansal, P., Wilson, D., Sotillo, J., Brindley, P., Loukas, A., Smout, M., Daly, N.
PDB entry 6e1m: Structure of AtTPC1(DDE) reconstituted in saposin A
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2018-07-10
Authors: Kintzer, A.F., Green, E.M., Cheng, Y., Stroud, R.M.
PDB entry 6e1n: Structure of AtTPC1(DDE) in state 1
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2018-07-10
Authors: Kintzer, A.F., Green, E.M., Cheng, Y., Stroud, R.M.
PDB entry 6e1o: afTMEM16 reconstituted in nanodiscs in the presence of Ca2+ and ceramide 24:0
Classification: LIPID TRANSPORT
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2018-07-10
Authors: Falzone, M.E., Accardi, A.
PDB entry 6e1p: Structure of AtTPC1(DDE) in state 2
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2018-07-10
Authors: Kintzer, A.F., Green, E.M., Cheng, Y., Stroud, R.M.
PDB entry 6e1q: AtGH3.15 acyl acid amido synthetase in complex with 2,4-DB
Classification: LIGASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.148 Å
Deposited: 2018-07-10
Authors: Sharp, A.M., Lee, S.G., Jez, J.M.
PDB entry 6e1r: Crystal structure of the Acinetobacter phage vB_ApiP_P1 tailspike protein
Classification: HYDROLASE
Source organism: Acinetobacter phage vB_ApiP_P1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.693 Å
Deposited: 2018-07-10
Authors: Plattner, M., Shneider, M.M., Oliveira, H., Azeredo, J., Leiman, P.G.
PDB entry 6e1s: Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2018-07-10
Authors: Numata, T., Connelly, C.M., Schneekloth, J.S., Ferre-D'Amare, A.R.
PDB entry 6e1t: Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2018-07-10
Authors: Numata, T., Connelly, C.M., Schneekloth, J.S., Ferre-D'Amare, A.R.
PDB entry 6e1u: Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2018-07-10
Authors: Numata, T., Connelly, C.M., Schneekloth, J.S., Ferre-D'Amare, A.R.
PDB entry 6e1v: Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2018-07-10
Authors: Numata, T., Connelly, C.M., Schneekloth, J.S., Ferre-D'Amare, A.R.
PDB entry 6e1w: Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2018-07-10
Authors: Numata, T., Connelly, C.M., Schneekloth, J.S., Ferre-D'Amare, A.R.
PDB entry 6e1x: Crystal structure of product-bound complex of spermidine/spermine N-acetyltransferase SpeG
Classification: TRANSFERASE
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2018-07-10
Authors: Filippova, E.V., Minasov, G., Kiryukhina, O., Anderson, W.F., Satchell, K.J.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6e1y: Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design
Classification: gene regulation/inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.219 Å
Deposited: 2018-07-10
Authors: Phan, J., Fesik, S.W.
PDB entry 6e1z: Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity
Classification: gene regulation/inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2018-07-10
Authors: Phan, J., Fesik, S.W.
PDB entry 6e20: Crystal structure of the Dario rerio galectin-1-L2
Classification: SUGAR BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-07-10
Authors: Ghosh, A., Bianchet, M.A.
PDB entry 6e21: Joint X-ray/neutron structure of PKAc with products Sr2-ADP and phosphorylated peptide SP20
Classification: TRANSFERASE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2018-07-10
Authors: Kovalevsky, A., Gerlits, O.O., Taylor, S.
PDB entry 6e22: Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity
Classification: gene regulation/inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2018-07-10
Authors: Phan, J., Fesik, S.W.
PDB entry 6e23: Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity
Classification: gene regulation/inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2018-07-10
Authors: Phan, J., Fesik, S.W.
PDB entry 6e24: Ternary structure of c-Myc-TBP-TAF1
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.001 Å
Deposited: 2018-07-10
Authors: Wei, Y., Dong, A., Sunnerhagen, M., Penn, L., Tong, Y., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)
PDB entry 6e25: NMR solution structure of the CARD9 CARD bound to zinc
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2018-07-10
Authors: Holliday, M.J., Dueber, E.C., Fairbrother, W.J.
PDB entry 6e26: NMR solution structure of the CARD9 CARD
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2018-07-10
Authors: Holliday, M.J., Dueber, E.C., Fairbrother, W.J.
PDB entry 6e27: The CARD9 CARD domain-swapped dimer with a zinc ion bound to one of the two zinc binding sites
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.811 Å
Deposited: 2018-07-10
Authors: Holliday, M.J., Ferrao, R., Boenig, G., Deuber, E.C., Fairbrother, W.J.
PDB entry 6e28: The CARD9 CARD domain-swapped dimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2018-07-10
Authors: Holliday, M.J., Ferrao, R., Boenig, G., Deuber, E.C., Fairbrother, W.J.
PDB entry 6e29: Crystal structure of Myceliophteria_thermophila Cps50 (Swd1) beta-propeller domain
Classification: PROTEIN BINDING
Source organism: Myceliophthora thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.818 Å
Deposited: 2018-07-10
Authors: Joshi, M., Yang, Y., Brunzelle, J.S., Couture, J.F.
PDB entry 6e2a: Crystal structure of NADH:quinone reductase PA1024 from Pseudomonas aeruginosa PAO1 in complex with NAD+
Classification: FLAVOPROTEIN, Oxidoreductase
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-07-10
Authors: Reis, R.A.G., Ball, J., Agniswamy, J., Weber, I., Gadda, G.
PDB entry 6e2b: Ubiquitin in complex with Pt(2-phenilpyridine)(PPh3)
Classification: PROTEIN BINDING
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2018-07-11
Authors: Zhemkov, V.A., Kim, M.
PDB entry 6e2f: Cryo-EM structure of human TRPV6 in complex with Calmodulin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2018-07-11
Authors: Singh, A.K., McGoldrick, L.L., Sobolevsky, A.I.
PDB entry 6e2g: Cryo-EM structure of rat TRPV6 in complex with Calmodulin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2018-07-11
Authors: Singh, A.K., McGoldrick, L.L., Sobolevsky, A.I.
PDB entry 6e2h: Crystal structure of human Ash2L (SPRY domain and SDI motif) in complex with full length DPY-30
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.236 Å
Deposited: 2018-07-11
Authors: Joshi, M., Brunzelle, J.S., Couture, J.F.
PDB entry 6e2j: Crystal structure of the heterocomplex between human keratin 1 coil 1B containing S233L mutation and wild-type human keratin 10 coil 1B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.386 Å
Deposited: 2018-07-11
Authors: Eldirany, S.A., Lomakin, I.B., Bunick, C.G.
PDB entry 6e2m: ASK1 kinase domain complex with inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.253 Å
Deposited: 2018-07-11
Authors: Lansdon, E.B.
PDB entry 6e2n: ASK1 kinase domain complex with inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.098 Å
Deposited: 2018-07-11
Authors: Lansdon, E.B.
PDB entry 6e2o: ASK1 kinase domain complex with inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.389 Å
Deposited: 2018-07-11
Authors: Lansdon, E.B.
PDB entry 6e2p: Structure of human JAK2 FERM/SH2 in complex with Leptin Receptor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2018-07-11
Authors: Ferrao, R., Lupardus, P.J., Wallweber, H.J.A.
PDB entry 6e2q: Structure of human JAK2 FERM/SH2 in complex with Erythropoietin Receptor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2018-07-11
Authors: Ferrao, R., Lupardus, P.J.
PDB entry 6e2r: Mechanism of cellular recognition by PCV2
Classification: VIRUS LIKE PARTICLE
Source organism: Porcine circovirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2018-07-12
Authors: Khayat, R., Dhindwal, S.
PDB entry 6e2s: apo form of MDDEF with buffer exchange
Classification: LYASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.791 Å
Deposited: 2018-07-12
Authors: Stauffacher, C.V., Chen, C.-L.
PDB entry 6e2t: MDDEF in complex with MVAPP
Classification: LYASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.692 Å
Deposited: 2018-07-12
Authors: Stauffacher, C.V., Chen, C.-L.
PDB entry 6e2u: MDDEF in complex with MVAPP, AMPPCP and Magnesium
Classification: LYASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2018-07-12
Authors: Stauffacher, C.V., Chen, C.-L.
PDB entry 6e2v: MDDEF in complex with MVAPP, ADPBeF3 and magnesium
Classification: LYASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2018-07-12
Authors: Stauffacher, C.V., Chen, C.-L.
PDB entry 6e2w: MDDEF in complex with MVAPP, ADP, sulfate and cobalt
Classification: LYASE
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2018-07-12
Authors: Stauffacher, C.V., Chen, C.-L.
PDB entry 6e2x: Mechanism of cellular recognition by PCV2
Classification: VIRUS LIKE PARTICLE
Source organism: Porcine circovirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2018-07-12
Authors: Khayat, R., Dhindwal, S.