LiteFold/PDB huggingface dataset:
PDB entry 8fw6: Human Lactate Dehydrogenase A in Complex with Inhibitor CHK-336
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-01-20
Authors: Lowther, W.T., Gumpena, R.
PDB entry 8fw7: Histone from Bdellovibrio bacteriovorus bound to dsDNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Bdellovibrio bacteriovorus HD100; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-20
Authors: Laursen, S.P., Luger, K.
PDB entry 8fw8: MtrR from Neisseria gonorrhoeae bound to Progesterone
Classification: TRANSCRIPTION
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-01-20
Authors: Hooks, G.H., Brennan, R.G.
PDB entry 8fw9: Cryo-EM structure of full-length human NLRC4 inflammasome with C12 symmetry
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.46 Å
Deposited: 2023-01-20
Authors: Matico, R.E., Yu, X., Miller, R., Somani, S., Ricketts, M.D., Kumar, N., Steele, R.A., Medley, Q., Berger, S., Faustin, B., Sharma, S.
PDB entry 8fwa: Phycocyanin structure from a modular droplet injector for serial femtosecond crystallography
Classification: PLANT PROTEIN
Source organism: Thermosynechococcus vestitus BP-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-20
Authors: Botha, S., Doppler, D.L., Sonker, M., Egatz-Gomez, A., Grieco, A., Zaare, S., Jernigan, R., Meza-Aguilar, J.D., Rabbani, M.T., Manna, A., Alvarez, R., Karpos, K., Cruz Villarreal, J., Nelson, G., Ketawala, G.K., Pey, A.L., Ruiz-Fresneda, M.A., Pacheco-Garcia, J.L., Nazari, R., Sierra, R., Hunter, M.S., Batyuk, A., Kupitz, C.J., Sublett, R.E., Lisova, S., Mariani, V., Boutet, S., Fromme, R., Grant, T.D., Fromme, P., Kirian, R.A., Martin-Garcia, J.M., Ros, A.
PDB entry 8fwb: Portal assembly of Agrobacterium phage Milano
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-01-20
Authors: Sonani, R.R., Wang, F., Esteves, N.C., Kelly, R.J., Sebastian, A., Kreutzberger, M.A.B., Leiman, P.G., Scharf, B.E., Egelman, E.H.
PDB entry 8fwc: Collar sheath structure of Agrobacterium phage Milano
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-01-20
Authors: Sonani, R.R., Wang, F., Esteves, N.C., Kelly, R.J., Sebastian, A., Kreutzberger, M.A.B., Leiman, P.G., Scharf, B.E., Egelman, E.H.
PDB entry 8fwd: Fast and versatile sequence- independent protein docking for nanomaterials design using RPXDock
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-01-20
Authors: Skotheim, R., Borst, A.J., Baker, D.
PDB entry 8fwe: Neck structure of Agrobacterium phage Milano, C3 symmetry
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-01-21
Authors: Sonani, R.R., Wang, F., Esteves, N.C., Kelly, R.J., Sebastian, A., Kreutzberger, M.A.B., Leiman, P.G., Scharf, B.E., Egelman, E.H.
PDB entry 8fwf: Crystal structure of Apo form Fab235
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-01-21
Authors: Tan, K., Kim, M., Reinherz, E.L.
PDB entry 8fwg: Structure of neck and portal vertex of Agrobacterium phage Milano, C5 symmetry
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2023-01-22
Authors: Sonani, R.R., Wang, F., Esteves, N.C., Kelly, R.J., Sebastian, A., Kreutzberger, M.A.B., Leiman, P.G., Scharf, B.E., Egelman, E.H.
PDB entry 8fwh: Crystal structure of bivalent antibody Fab fragment of Anti-human LAG3 (22D2)
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.833 Å
Deposited: 2023-01-22
Authors: Mishra, A.K., Agnihotri, P., Mariuzza, R.A.
PDB entry 8fwi: Structure of dodecameric KaiC-RS-S413E/S414E solved by cryo-EM
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Cereibacter sphaeroides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-22
Authors: Padua, R.A.P., Grant, T., Pitsawong, W., Hoemberger, M.S., Otten, R., Bradshaw, N., Grigorieff, N., Kern, D.
PDB entry 8fwj: Structure of dodecameric KaiC-RS-S413E/S414E complexed with KaiB-RS solved by cryo-EM
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Cereibacter sphaeroides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-22
Authors: Padua, R.A.P., Grant, T., Pitsawong, W., Hoemberger, M.S., Otten, R., Bradshaw, N., Grigorieff, N., Kern, D.
PDB entry 8fwk: CryoEM structure of Human ABCB6 Transporter
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-01-22
Authors: Shaik, M.M., Myasnikov, A.
PDB entry 8fwl: Crystal structure of Australian bat lyssavirus nucleoprotein in complex with phosphoprotein chaperone
Classification: VIRAL PROTEIN
Source organism: Lyssavirus australis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2023-01-23
Authors: Donnelly, C.M., Stewart, M., Forwood, J.K.
PDB entry 8fwm: Structure of tail-neck junction of Agrobacterium phage Milano
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-01-23
Authors: Sonani, R.R., Wang, F., Esteves, N.C., Kelly, R.J., Sebastian, A., Kreutzberger, M.A.B., Leiman, P.G., Scharf, B.E., Egelman, E.H.
PDB entry 8fwn: Crystal structure of SARS-CoV-2 papain-like protease C111S mutant
Classification: Viral protein, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-01-23
Authors: Bezerra, E.H.S., Soprano, A.S., Tonoli, C.C.C., Prado, P.F.V., da Silva, J.C., Franchini, K.G., Trivella, D.B.B., Benedetti, C.E.
PDB entry 8fwo: Crystal structure of SARS-CoV-2 papain-like protease
Classification: Viral protein, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-23
Authors: Bezerra, E.H.S., Soprano, A.S., Tonoli, C.C.C., Prado, P.F.V., da Silva, J.C., Franchini, K.G., Trivella, D.B.B., Benedetti, C.E.
PDB entry 8fwp: Crystal Structure of CDC10 - CDC3 heterocomplex from Saccharomyces cerevisiae
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2023-01-23
Authors: Silva, R.M., Leonardo, D.A., Pereira, H.M., Garratt, R.C.
PDB entry 8fwq: Structure of kainate receptor GluK2 in complex with the positive allosteric modulator BPAM344
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2023-01-23
Authors: Gangwar, S.P., Yen, L.Y., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 8fwr: Structure of the amino-terminal domain of kainate receptor GluK2 in complex with the positive allosteric modulator BPAM344
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-23
Authors: Gangwar, S.P., Yen, L.Y., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 8fws: Structure of the ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with the positive allosteric modulator BPAM344
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-01-23
Authors: Gangwar, S.P., Yen, L.Y., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 8fwt: Structure of the amino terminal domain of kainate receptor GluK2 in complex with the positive allosteric modulator BPAM344 and competitive antagonist DNQX
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2023-01-23
Authors: Yen, L.Y., Gangwar, S.P., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 8fwu: Structure of the ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with the positive allosteric modulator BPAM344 and competitive antagonist DNQX
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-01-23
Authors: Yen, L.Y., Gangwar, S.P., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 8fwv: Structure of the amino-terminal domain of kainate receptor GluK2 in complex with the positive allosteric modulator BPAM344 and noncompetitive inhibitor perampanel
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-01-23
Authors: Gangwar, S.P., Yen, L.Y., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 8fww: Structure of the ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with the positive allosteric modulator BPAM344 and noncompetitive inhibitor perampanel
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-23
Authors: Gangwar, S.P., Yen, L.Y., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 8fwx: Apo crystal structure of beluga whale Gammacoronavirus SW1 Mpro
Classification: VIRAL PROTEIN
Source organism: Beluga whale coronavirus SW1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-01-23
Authors: Ornelas, E., Knapp, M.S.
PDB entry 8fwy: Crystal structure of the Trypanosoma cruzi hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT), isoform D, bound to the dead-end complex xanthine and pyrophosphate
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi  (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-01-23
Authors: Hughes, R., Meneely, K.M., Glockzin, K., Tyler, P.C., Lamb, A.L., Meek, T.D., Katzfuss, A.
PDB entry 8fwz: Crystal structure of the Trypanosoma cruzi hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT), isoform D, bound to Hydroxypropyl-Lin-ImmH Phosphonate
Classification: TRANSFERASE/INHIBITOR
Source organism: Trypanosoma cruzi  (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-01-23
Authors: Hughes, R., Meneely, K.M., Glockzin, K., Clinch, K., Tyler, P.C., Lamb, A.L., Meek, T.D., Katzfuss, A.
PDB entry 8fx0: Crystal structure of the Trypanosoma cruzi hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT), isoform D, bound to (S)-SerMe-ImmH Phosphonate
Classification: TRANSFERASE/INHIBITOR
Source organism: Trypanosoma cruzi  (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-01-23
Authors: Hughes, R., Meneely, K.M., Glockzin, K., Clinch, K., Tyler, P.C., Lamb, A.L., Meek, T.D., Katzfuss, A.
PDB entry 8fx1: Crystal structure of the Trypanosoma cruzi hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT), isoform D, bound to (R)-SerMe-ImmH Phosphonate
Classification: TRANSFERASE/INHIBITOR
Source organism: Trypanosoma cruzi  (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-23
Authors: Hughes, R., Meneely, K.M., Glockzin, K., Clinch, K., Tyler, P.C., Lamb, A.L., Meek, T.D., Katzfuss, A.
PDB entry 8fx2: Crystal structure of the Trypanosoma cruzi hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT), isoform D, bound to Immucillin-HP
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi  (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-01-23
Authors: Hughes, R., Meneely, K.M., Glockzin, K., Suthagar, K., Tyler, P.C., Lamb, A.L., Meek, T.D., Katzfuss, A.
PDB entry 8fx3: Crystal structure of the Trypanosoma cruzi hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT), isoform D, bound to Immucillin-GP, showing the structure of the complete active site in its open conformation
Classification: TRANSFERASE/INHIBITOR
Source organism: Trypanosoma cruzi  (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-01-23
Authors: Hughes, R., Meneely, K.M., Glockzin, K., Suthagar, K., Tyler, P.C., Lamb, A.L., Meek, T.D., Katzfuss, A.
PDB entry 8fx4: GC-C-Hsp90-Cdc37 regulatory complex
Classification: SIGNALING PROTEIN/CHAPERONE
Source organism: Cricetulus griseus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-01-23
Authors: Caveney, N.A., Garcia, K.C.
PDB entry 8fx5: Human M4 muscarinic acetylcholine receptor complex with Gi1 and xanomeline
Classification: MEMBRANE PROTEIN/SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2023-01-23
Authors: Vuckovic, Z., Mobbs, J.I., Glukhova, A., Sexton, P.M., Danev, R., Thal, D.M.
PDB entry 8fx6: Non-ribosomal PCP-C didomain (amide stabilised leucine) acceptor bound state
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermobifida fusca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-24
Authors: Ho, Y.T.C., Cryle, M.J.
PDB entry 8fx7: Non-ribosomal PCP-C didomain (ester stabilised leucine) acceptor bound state
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-24
Authors: Ho, Y.T.C., Cryle, M.J.
PDB entry 8fx9: Crystal strucutre of Mycobacterium tuberculosis Mycothiol-S-transferase enzyme
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-01-24
Authors: Lindenberger, J.J., Jayasinghe, Y.P., Ronning, D.R.
PDB entry 8fxa: Bromodomain of CBP liganded with iCBP4
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-01-24
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fxb: SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-24
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 8fxc: SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-01-24
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 8fxd: Rubrerythrin from B. pseudomallei: manganese-bound
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-01-24
Authors: Monteiro, D.C.F., Snell, M.E., Budziszewski, G.R., Bowman, S.E.J.
PDB entry 8fxe: Bromodomain of CBP liganded with iCBP6
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-01-24
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fxf: Crystal structure of the coiled-coil domain of TRIM56
Classification: LIGASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-01-24
Authors: Lou, X.H., Ma, B.B., Zhuang, Y., Li, X.C.
PDB entry 8fxh: Cryo-EM structure of Stanieria sp. CphA2
Classification: LIGASE
Source organism: Stanieria sp. NIES-3757
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-24
Authors: Markus, L.M., Sharon, I., Strauss, M., Schmeing, T.M.
PDB entry 8fxi: Cryo-EM structure of Stanieria sp. CphA2 in complex with ADPCP and 4x(beta-Asp-Arg)
Classification: LIGASE
Source organism: Stanieria sp. NIES-3757; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-24
Authors: Markus, L.M., Sharon, I., Strauss, M., Schmeing, T.M.
PDB entry 8fxj: Crystal structure of Fab460
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-24
Authors: Tan, K., Kim, M., Reinherz, E.L.
PDB entry 8fxn: Bromodomain of CBP liganded with iCBP7
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-25
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fxo: Bromodomain of CBP liganded with iCBP8
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-01-25
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8fxp: Structure of capsid of Agrobacterium phage Milano
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2023-01-25
Authors: Sonani, R.R., Wang, F., Esteves, N.C., Kelly, R.J., Sebastian, A., Kreutzberger, M.A.B., Leiman, P.G., Scharf, B.E., Egelman, E.H.
PDB entry 8fxq: The Crystal Sturucture of Rhizopuspepsin with a bound modified peptide inhibitor generated by de novo drug design.
Classification: HYDROLASE
Source organism: Rhizopus microsporus var. chinensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2023-01-25
Authors: Satyshur, K.A., Rich, D.H., Ripka, A.S.
PDB entry 8fxr: Structure of neck with portal vertex of capsid of Agrobacterium phage Milano
Classification: VIRUS
Source organism: Agrobacterium phage Milano
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-01-25
Authors: Sonani, R.R., Wang, F., Esteves, N.C., Kelly, R.J., Sebastian, A., Kreutzberger, M.A.B., Leiman, P.G., Scharf, B.E., Egelman, E.H.
PDB entry 8fxs: Crystal structure of human pro-TGF-beta2 in complex with Nb9
Classification: CYTOKINE
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-01-25
Authors: Le, V.Q., Springer, T.A.
PDB entry 8fxt: Escherichia coli periplasmic Glucose-Binding Protein glucose complex: Acrylodan conjugate attached at W183C
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-01-25
Authors: Allert, M.J., Kumar, S., Wang, Y., Beese, L.S., Hellinga, H.W.
PDB entry 8fxu: Thermoanaerobacter thermosaccharolyticum periplasmic Glucose-Binding Protein glucose complex: Badan conjugate attached at F17C
Classification: SUGAR BINDING PROTEIN
Source organism: Thermoanaerobacterium thermosaccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-01-25
Authors: Allert, M.J., Kumar, S., Beese, L.S., Hellinga, H.W.
PDB entry 8fxv: Crystal structure of human proTGF-beta2 in complex with Nb18
Classification: CYTOKINE
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-25
Authors: Le, V.Q., Springer, T.A.
PDB entry 8fxw: Cryo-EM structure of cowpox virus M2 in complex with human B7.1 (hexameric ring)
Classification: VIRAL PROTEIN
Source organism: Cowpox virus (Brighton Red); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-25
Authors: Elliott, J.I., Adams, L.J., Nelson, C.A., Fremont, D.H., CSBID, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8fxx: Cryo-EM structure of cowpox virus M2 in complex with human B7.2 (heptameric ring)
Classification: VIRAL PROTEIN
Source organism: Cowpox virus (Brighton Red); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-01-25
Authors: Elliott, J.I., Adams, L.J., Nelson, C.A., Fremont, D.H., CSBID
PDB entry 8fxy: Cryo-EM structure of cowpox virus M2 in complex with human B7.2 (hexameric ring)
Classification: VIRAL PROTEIN
Source organism: Cowpox virus (Brighton Red); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2023-01-25
Authors: Elliott, J.I., Adams, L.J., Nelson, C.A., Fremont, D.H., CSBID
PDB entry 8fxz: Cryo-EM structure of cowpox virus M2 in complex with human B7.1 (heptameric ring)
Classification: VIRAL PROTEIN
Source organism: Cowpox virus (Brighton Red); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-01-25
Authors: Elliott, J.I., Adams, L.J., Nelson, C.A., Fremont, D.H., CSBID
PDB entry 8fy0: E3:PROTAC:target ternary complex structure (VCB/753b/BCL-xL)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2023-01-25
Authors: Olsen, S.K., Nayak, D., Lv, D., Yuan, Y., Zhang, P., Hu, W., Lv, Z., Sung, P., Hromas, R., Zheng, G., Zhou, D.
PDB entry 8fy1: E3:PROTAC:target ternary complex structure (VCB/753b/BCL-2)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2023-01-25
Authors: Nayak, D., Lv, D., Yuan, Y., Zhang, P., Hu, W., Lv, Z., Sung, P., Hromas, R., Zheng, G., Zhou, D., Olsen, S.K.
PDB entry 8fy2: E3:PROTAC:target ternary complex structure (VCB/WH244/BCL-2)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2023-01-25
Authors: Nayak, D., Lv, D., Yuan, Y., Zhang, P., Hu, W., Ruben, E., Lv, Z., Sung, P., Hromas, R., Zheng, G., Zhou, D., Olsen, S.K.
PDB entry 8fy3: Structure of NOT1:NOT10:NOT11 module of the human CCR4-NOT complex
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-01-25
Authors: Lea, S.M., Deme, J.C., Raisch, T., Pekovic, F., Valkov, E.
PDB entry 8fy4: Structure of NOT1:NOT10:NOT11 module of the chicken CCR4-NOT complex
Classification: RNA BINDING PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-01-25
Authors: Lea, S.M., Deme, J.C., Raisch, T., Levdansky, Y., Valkov, E.
PDB entry 8fy5: Human TMEM175-LAMP1 full-length complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-01-25
Authors: Zhang, J.Y., Zeng, W.Z., Han, Y., Jiang, Y.X.
PDB entry 8fy6: SARS-CoV-2 main protease in complex with covalent inhibitor
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-25
Authors: Fried, W., Chen, X.S.
PDB entry 8fy7: SARS-CoV-2 main protease in complex with covalent inhibitor
Classification: VIRAL PROTEIN, hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-01-25
Authors: Fried, W., Chen, X.S.
PDB entry 8fy8: 5-MeO-DMT-bound serotonin 1A (5-HT1A) receptor-Gi1 protein complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-01-25
Authors: Warren, A.L., Zilberg, G., Capper, M.J., Wacker, D.
PDB entry 8fy9: Cryo-EM structure of Cas1:Cas2-DEDDh:PAM-deficient prespacer complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Megasphaera; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-25
Authors: Skopintsev, P., Tuck, O.T., Soczek, K.M., Doudna, J.
PDB entry 8fya: Cryo-EM structure of Cas1:Cas2-DEDDh:PAM-containing prespacer complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Megasphaera; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-01-25
Authors: Skopintsev, P., Tuck, O.T., Soczek, K.M., Doudna, J.
PDB entry 8fyb: Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Megasphaera; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-25
Authors: Skopintsev, P., Tuck, O.T., Soczek, K.M., Doudna, J.
PDB entry 8fyc: Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex linear CRISPR repeat conformation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Megasphaera; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-01-25
Authors: Skopintsev, P., Tuck, O.T., Soczek, K.M., Doudna, J.
PDB entry 8fyd: Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex bent CRISPR repeat conformation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Megasphaera; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-01-25
Authors: Skopintsev, P., Tuck, O.T., Soczek, K.M., Doudna, J.
PDB entry 8fye: 4-F, 5-MeO-PyrT-bound serotonin 1A (5-HT1A) receptor-Gi1 protein complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-01-26
Authors: Warren, A.L., Zilberg, G., Capper, M.J., Wacker, D.
PDB entry 8fyf: Human TMEM175-LAMP1 transmembrane domain only complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-26
Authors: Zhang, J.Y., Zeng, W.Z., Han, Y., Jiang, Y.X.
PDB entry 8fyg: Crystal structure of Hyaluronate lyase A from Cutibacterium acnes
Classification: LYASE
Source organism: Cutibacterium acnes HL043PA1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-01-26
Authors: Katiki, M., McNally, R., Chatterjee, A., Hajam, I.A., Liu, G.Y., Murali, R.
PDB entry 8fyh: G4 RNA-mediated PRC2 dimer
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-26
Authors: Song, J., Kasinath, V.
PDB entry 8fyi: Structure of HIV-1 BG505 SOSIP-HT1 in complex with one CD4 molecule
Classification: Viral protein/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-26
Authors: Fan, C., Dam, K.A., Bjorkman, P.J.
PDB entry 8fyj: Structure of HIV-1 BG505 SOSIP-HT2 in complex with two CD4 molecules (class I)
Classification: Viral protein/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-01-26
Authors: Fan, C., Dam, K.A., Bjorkman, P.J.
PDB entry 8fyl: Vilazodone-bound serotonin 1A (5-HT1A) receptor-Gi1 protein complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-01-26
Authors: Warren, A.L., Zilberg, G., Capper, M.J., Wacker, D.
PDB entry 8fym: Crystal structure of Fab235 in complex with MPER peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-01-26
Authors: Tan, K., Kim, M., Reinherz, E.L.
PDB entry 8fyn: MicroED structure of A2A from plasma milled lamellae
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2 Å
Deposited: 2023-01-26
Authors: Martynowycz, M.W., Shiriaeva, A., Clabbers, M.T.B., Nicolas, W.J., Weaver, S.J., Hattne, J., Gonen, T.
PDB entry 8fyo: MicroED structure of Proteinase K from lamellae milled from multiple plasma sources
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.39 Å
Deposited: 2023-01-26
Authors: Martynowycz, M.W., Shiriaeva, A., Clabbers, M.T.B., Nicolas, W.J., Weaver, S.J., Hattne, J., Gonen, T.
PDB entry 8fyp: MicroED structure of Proteinase K from xenon milled lamellae
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.45 Å
Deposited: 2023-01-26
Authors: Martynowycz, M.W., Shiriaeva, A., Clabbers, M.T.B., Nicolas, W.J., Weaver, S.J., Hattne, J., Gonen, T.
PDB entry 8fyq: MicroED structure of Proteinase K from argon milled lamellae
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.4 Å
Deposited: 2023-01-26
Authors: Martynowycz, M.W., Shiriaeva, A., Clabbers, M.T.B., Nicolas, W.J., Weaver, S.J., Hattne, J., Gonen, T.
PDB entry 8fyr: MicroED structure of Proteinase K from oxygen milled lamellae
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.5 Å
Deposited: 2023-01-26
Authors: Martynowycz, M.W., Shiriaeva, A., Clabbers, M.T.B., Nicolas, W.J., Weaver, S.J., Hattne, J., Gonen, T.
PDB entry 8fys: MicroED structure of Proteinase K from nitrogen milled lamellae
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.8 Å
Deposited: 2023-01-26
Authors: Martynowycz, M.W., Shiriaeva, A., Clabbers, M.T.B., Nicolas, W.J., Weaver, S.J., Hattne, J., Gonen, T.
PDB entry 8fyt: LSD-bound serotonin 1A (5-HT1A) receptor-Gi1 protein complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-01-26
Authors: Warren, A.L., Zilberg, G., Capper, M.J., Wacker, D.
PDB entry 8fyu: Crystal structure of the human CHIP-TPR domain in complex with a 10mer acetylated tau peptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84839 Å
Deposited: 2023-01-26
Authors: Wucherer, K., Bohn, M.F., Basu, K., Nadel, C.M., Gestwicki, J.E., Craik, C.S.
PDB entry 8fyv: Salmonella enterica serovar Typhimurium chemoreceptor Tsr (taxis to serine and repellents) ligand-binding domain in complex with l-serine
Classification: SIGNALING PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-26
Authors: Baylink, A., Gentry-Lear, Z., Glenn, S.
PDB entry 8fyw: Cryo-EM Structure of genome containing AAV2
Classification: VIRUS
Source organism: adeno-associated virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-01-26
Authors: Bennett, A.D., Mckenna, R.
PDB entry 8fyx: Buspirone-bound serotonin 1A (5-HT1A) receptor-Gi1 protein complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2023-01-26
Authors: Warren, A.L., Zilberg, G., Capper, M.J., Wacker, D.
PDB entry 8fyy: Crystal structure of human PARP1 ART domain bound to inhibitor UKTT5 (compound 10)
Classification: DNA BINDING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-01-27
Authors: Rouleau-Turcotte, E., Pascal, J.M.
PDB entry 8fyz: Crystal structure of human PARP1 ART domain bound to inhibitor UKTT10 (compound 13)
Classification: DNA BINDING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-01-27
Authors: Rouleau-Turcotte, E., Pascal, J.M.
PDB entry 8fz0: Cryo-EM Structure of empty AAV2 capsid
Classification: VIRUS
Source organism: adeno-associated virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-01-27
Authors: Bennett, A.D., McKenna, R.
PDB entry 8fz1: Crystal structure of human PARP1 ART domain bound to inhibitor UKTT22 (compound 14)
Classification: DNA BINDING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-01-27
Authors: Rouleau-Turcotte, E., Pascal, J.M.
PDB entry 8fz2: Crystal structure of Fab460 in complex with MPER peptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-01-27
Authors: Tan, K., Kim, M., Reinherz, E.L.
PDB entry 8fz3: Sterile Alpha Motif of Human Translocation ETS Leukemia, Non-Polymer Crystal Form
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.784 Å
Deposited: 2023-01-27
Authors: Averett, J.C., Nawarathnage, S.D., Moody, J.D.
PDB entry 8fz4: The von Willebrand factor A domain of Anthrax toxin receptor 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2023-01-27
Authors: Pedroza-Romo, M.J., Soleimani, S., Lewis, A., Smith, T., Brown, S., Doukov, T., Moody, J.D.
PDB entry 8fz5: The PI31-free Bovine 20S proteasome
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.23 Å
Deposited: 2023-01-27
Authors: Hsu, H.-C., Li, H.
PDB entry 8fz6: The human PI31 complexed with bovine 20S proteasome
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-01-27
Authors: Hsu, H.-C., Li, H.
PDB entry 8fz7: TpeA bound closed MthK-A88F mutant in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Methanothermobacter thermautotrophicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-01-27
Authors: Agarwal, S., Nimigean, C.M.
PDB entry 8fz8: Structure of cytochrome P450sky2
Classification: OXIDOREDUCTASE
Source organism: Streptomyces nodosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-01-27
Authors: Murarka, V.C., Poulos, T.L.
PDB entry 8fz9: Crystal Structure of Bacillus cereus TIR protein
Classification: CHAPERONE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-01-27
Authors: Khudaverdyan, N., Song, J.
PDB entry 8fza: Class I type III preQ1 riboswitch from E. coli
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-01-27
Authors: Wedekind, J.E., Schroeder, G.M., Jenkins, J.L.
PDB entry 8fzb: Crystal structure of human FAM86A
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-01-28
Authors: Shao, Z., Lu, J., Song, J.
PDB entry 8fzc: HIV-2 Gag Capsid from Immature Virus-like Particles
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus type 2 (ISOLATE ROD)
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2023-01-28
Authors: Talledge, N., Zhang, W., Mansky, L.M.
PDB entry 8fzd: Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-28
Authors: Rybak, M.Y., Li, L., Lin, J., Gagnon, M.G.
PDB entry 8fze: Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-01-28
Authors: Rybak, M.Y., Li, L., Lin, J., Gagnon, M.G.
PDB entry 8fzf: Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Classification: RIBOSOME/RNA
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-01-28
Authors: Rybak, M.Y., Li, L., Lin, J., Gagnon, M.G.
PDB entry 8fzg: Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-28
Authors: Rybak, M.Y., Li, L., Lin, J., Gagnon, M.G.
PDB entry 8fzh: Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-28
Authors: Rybak, M.Y., Li, L., Lin, J., Gagnon, M.G.
PDB entry 8fzi: Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-28
Authors: Rybak, M.Y., Li, L., Lin, J., Gagnon, M.G.
PDB entry 8fzj: Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-01-28
Authors: Rybak, M.Y., Li, L., Lin, J., Gagnon, M.G.
PDB entry 8fzk: Dimeric human importin alpha subunit
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-01-29
Authors: Donnelly, C.M., Stewart, M., Forwood, J.K.
PDB entry 8fzm: Human importin alpha 3 in complex with Bimax2 peptide
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-01-29
Authors: Donnelly, C.M., Forwood, J.K.
PDB entry 8fzn: Cryo-EM Structure of AAV2-R404A Variant
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-01-29
Authors: Bennett, A.D., McKenna, R.
PDB entry 8fzo: Crystal structure of polyreactive 338E6 mouse Fab
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-01-29
Authors: Borowska, M.T., Adams, E.J.
PDB entry 8fzp: Crystal structure of polyreactive 43G10 mouse Fab
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-01-29
Authors: Borowska, M.T., Adams, E.J.
PDB entry 8fzq: Dehosphorylated, ATP-bound human cystic fibrosis transmembrane conductance regulator (CFTR)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-01-29
Authors: Levring, J., Terry, D.S., Kilic, Z., Fitzgerald, G.A., Blanchard, S.C., Chen, J.
PDB entry 8fzr: CryoEM structure of yeast Arginyltransferase 1 (ATE1)
Classification: TRANSFERASE/RNA
Source organism: Escherichia coli; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-01-29
Authors: Huang, W., Zhang, Y., Taylor, D.J.
PDB entry 8fzt: SpCas9 with dual-guide RNA and target DNA
Classification: HYDROLASE
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-01-30
Authors: Korolev, S., Gagnon, K.
PDB entry 8fzu: The von Willebrand factor A domain of human capillary morphogenesis gene II, flexibly fused to the 1TEL crystallization chaperone, Thr-Val linker variant, Expressed with SUMO tag
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-30
Authors: Gajjar, P.L., Litchfield, C.M., Callahan, M., Redd, N., Doukov, T., Lebedev, A., Moody, J.D.
PDB entry 8fzv: The von Willebrand factor A domain of human capillary morphogenesis gene II, flexibly fused to the 1TEL crystallization chaperone, Ala-Ala linker variant, expressed with SUMO tag
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2023-01-30
Authors: Pedroza Romo, M.J., Soleimani, S., Doukov, T., Lebedev, A., Moody, J.D.
PDB entry 8fzw: Thaumatin crystallized in cyclic olefin copolymer-based microfluidic chips
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-01-30
Authors: Liu, Z., Gu, K., Shelby, M.L., Gilbile, D., Lyubimov, A.Y., Russi, S., Cohen, A.E., Coleman, M.A., Frank, M., Kuhl, T.L.
PDB entry 8fzy: Bacteroides spp. Ntox15 domain type VI secretion system effector Tde1
Classification: TOXIN
Source organism: Bacteroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-01-30
Authors: Bosch, D.E., Mougous, J.D.
PDB entry 8fzz: Phocaeicola vulgatus type VI secretion system Ntox15 effector and immunity Tde2/Tdi2
Classification: TOXIN
Source organism: Phocaeicola vulgatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2023-01-30
Authors: Bosch, D.E., Mougous, J.D.
PDB entry 8g00: Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-31
Authors: Porta, J.C., Chauvier, A., Deb, I., Ellinger, E., Frank, A.T., Meze, K., Ohi, M.D., Walter, N.G.
PDB entry 8g01: YES Complex - E. coli MraY, Protein E ID21, E. coli SlyD
Classification: TRANSFERASE/ISOMERASE
Source organism: Escherichia coli K-12; Escherichia phage ID21
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-31
Authors: Orta, A.K., Clemons, W.M., Riera, N.
PDB entry 8g02: YES Complex - E. coli MraY, Protein E PhiX174, E. coli SlyD
Classification: TRANSFERASE/ISOMERASE
Source organism: Escherichia coli K-12; Escherichia phage phiX174
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-01-31
Authors: Orta, A.K., Clemons, W.M., Li, Y.E.
PDB entry 8g04: Structure of signaling thrombopoietin-MPL receptor complex
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-31
Authors: Tsutsumi, N., Jude, K.M., Gati, C., Garcia, K.C.
PDB entry 8g05: Cryo-EM structure of an orphan GPCR-Gi protein signaling complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-01-31
Authors: Zhang, X., Wang, Y.J., Li, X., Liu, G.B., Gong, W.M., Zhang, C.
PDB entry 8g07: Cryo-EM structure of SQ31f-bound Mycobacterium smegmatis ATP synthase FO region
Classification: TRANSLOCASE/INHIBITOR
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-31
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 8g08: Cryo-EM structure of SQ31f-bound Mycobacterium smegmatis ATP synthase rotational state 1 (backbone model)
Classification: TRANSLOCASE/INHIBITOR
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-31
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 8g09: Cryo-EM structure of SQ31f-bound Mycobacterium smegmatis ATP synthase rotational state 2 (backbone model)
Classification: TRANSLOCASE/INHIBITOR
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-31
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 8g0a: Cryo-EM structure of SQ31f-bound Mycobacterium smegmatis ATP synthase rotational state 3
Classification: TRANSLOCASE/INHIBITOR
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-31
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 8g0b: Cryo-EM structure of TBAJ-876-bound Mycobacterium smegmatis ATP synthase FO region
Classification: TRANSLOCASE/INHIBITOR
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-31
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 8g0c: Cryo-EM structure of TBAJ-876-bound Mycobacterium smegmatis ATP synthase rotational state 1 (backbone model)
Classification: TRANSLOCASE/INHIBITOR
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-31
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 8g0d: Cryo-EM structure of TBAJ-876-bound Mycobacterium smegmatis ATP synthase rotational state 2 (backbone model)
Classification: TRANSLOCASE/INHIBITOR
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-31
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 8g0e: Cryo-EM structure of TBAJ-876-bound Mycobacterium smegmatis ATP synthase rotational state 3
Classification: TRANSLOCASE/INHIBITOR
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-01-31
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 8g0f: Crystal structure of diphtheria toxin H223Q/H257Q double mutant (pH 5.5)
Classification: TOXIN
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-01-31
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Ladokhin, A.S.
PDB entry 8g0g: Crystal structure of diphtheria toxin H223Q/H257Q double mutant (pH 4.5)
Classification: TOXIN
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-01-31
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Ladokhin, A.S.
PDB entry 8g0h: Human PARP1 deltaV687-E688 bound to UKTT5 (compound 10) and to a DNA double strand break.
Classification: DNA binding protein/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2023-01-31
Authors: Rouleau-Turcotte, E., Pascal, J.M.
PDB entry 8g0i: High Affinity nanobodies against GFP
Classification: IMMUNE SYSTEM
Source organism: Aequorea victoria; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-31
Authors: Ketaren, N.E., Rout, M.P., Almo, S.
PDB entry 8g0k: Bacteroides multispecies type VI secretion system Ntox15 domain effector and immunity Tde1/Tdi1
Classification: TOXIN
Source organism: Bacteroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-31
Authors: Bosch, D.E., Mougous, J.D.
PDB entry 8g0l: Semi-synthetic CoA-alpha-Synuclein Constructs Trap N-terminal Acetyltransferase NatB for Binding Mechanism Studies
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-01-31
Authors: Gardner, S.M., Marmorstein, R.
PDB entry 8g0m: Structure of complex between TV6.6 and CD98hc ECD
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-01-31
Authors: Kariolis, M.S., Lexa, K., Liau, N.P.D., Srivastava, D., Tran, H., Wells, R.C.
PDB entry 8g0n: FphI, Staphylococcus aureus fluorophosphonate-binding serine hydrolases I, apo form
Classification: HYDROLASE
Source organism: Staphylococcus aureus USA300-0114
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2023-01-31
Authors: Fellner, M.
PDB entry 8g0o: Crystal structure of Y281F mutant of Hyaluronate lyase B from Cutibacterium acnes
Classification: LYASE
Source organism: Cutibacterium acnes HL110PA3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-01
Authors: Katiki, M., McNally, R., Chatterjee, A., Hajam, I.A., Liu, G.Y., Murali, R.