LiteFold/PDB huggingface dataset:
PDB entry 3k9t: Crystal structure of putative peptidase (NP_348812.1) from CLOSTRIDIUM ACETOBUTYLICUM at 2.37 A resolution
Classification: HYDROLASE
Source organism: Clostridium acetobutylicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2009-10-16
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3k9u: Crystal structure of paia acetyltransferase (ta0374) from thermoplasma acidophilum
Classification: TRANSFERASE
Source organism: Thermoplasma acidophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-10-16
Authors: Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)
PDB entry 3k9v: Crystal structure of rat mitochondrial P450 24A1 S57D in complex with CHAPS
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-10-16
Authors: Annalora, A.J., Goodin, D.B., Hong, W., Zhang, Q., Johnson, E.F., Stout, C.D.
PDB entry 3k9w: Crystal structure of phosphopantetheine adenylyltransferase from Burkholderia pseudomallei with hydrolyzed 3'-dephospho Coenzyme A
Classification: TRANSFERASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-10-16
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3k9x: X-ray crystal structure of human fxa in complex with (S)-N-((2-METHYLBENZOFURAN-5-YLAMINO)(2-OXO-1-(2-OXO-2- (PYRROLIDIN-1-YL)ETHYL)AZEPAN-3- YLAMINO)METHYLENE)NICOTINAMIDE
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-16
Authors: Klei, H.E., Kish, K., Ghosh, K., Rushith, A.
PDB entry 3k9y: Crystal structure of rat mitochondrial P450 24A1 S57D in complex with CYMAL-5
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-10-16
Authors: Annalora, A.J., Goodin, D.B., Hong, W., Zhang, Q., Johnson, E.F., Stout, C.D.
PDB entry 3k9z: Rational Design of a Structural and Functional Nitric Oxide Reductase
Classification: OXYGEN TRANSPORT
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2009-10-16
Authors: Yeung, N., Lin, Y.-W., Gao, Y.-G., Zhao, X., Russell, B.S., Lei, L., Miner, K.D., Robinson, H., Lu, Y.
PDB entry 3ka0: MK2 complex with inhibitor 6-(5-(2-aminopyrimidin-4-ylamino)-2-hydroxyphenyl)-N-methylbenzo[b]thiophene-2-carboxamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-10-16
Authors: Argiriadi, M.A., Talanian, R.V., Borhani, D.W.
PDB entry 3ka2: Crystal structure of chemically synthesized 203 amino acid 'covalent dimer' [L-Ala;Gly51']HIV-1 protease molecule complexed with MVT-101 reduced isostere inhibitor at 1.4 A resolution
Classification: HYDROLASE/HYDROLASE INHIBITOR
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-10-18
Authors: Torbeev, V.Y., Kent, S.B.H.
PDB entry 3ka3: Frog M-ferritin with magnesium
Classification: OXIDOREDUCTASE
Source organism: Rana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-10-18
Authors: Tosha, T., Ng, H.L., Theil, E., Alber, T., Bhattasali, O.
PDB entry 3ka4: Frog M-ferritin with cobalt
Classification: OXIDOREDUCTASE
Source organism: Rana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-10-18
Authors: Tosha, T., Ng, H.L., Theil, E., Alber, T., Bhattasali, O.
PDB entry 3ka5: Crystal structure of Ribosome-associated protein Y (PSrp-1) from Clostridium acetobutylicum. Northeast Structural Genomics Consortium target id CaR123A
Classification: CHAPERONE
Source organism: Clostridium acetobutylicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-18
Authors: Seetharaman, J., Neely, H., Wang, D., Janjua, H., Cunningham, K., Owens, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 3ka6: Frog M-ferritin, EED mutant, with cobalt
Classification: OXIDOREDUCTASE
Source organism: Rana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-10-18
Authors: Tosha, T., Ng, H.L., Theil, E., Alber, T., Bhattasali, O.
PDB entry 3ka7: Crystal Structure of an oxidoreductase from Methanosarcina mazei. Northeast Structural Genomics Consortium target id MaR208
Classification: OXIDOREDUCTASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-18
Authors: Seetharaman, J., Su, M., Wang, D., Janjua, H., Cunningham, K., Owens, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3ka8: Frog M-ferritin, EQH mutant, with cobalt
Classification: OXIDOREDUCTASE
Source organism: Rana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2009-10-19
Authors: Tosha, T., Ng, H.L., Theil, E., Alber, T., Bhattasali, O.
PDB entry 3ka9: Frog M-ferritin, EEH mutant, with cobalt
Classification: OXIDOREDUCTASE
Source organism: Rana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2009-10-19
Authors: Tosha, T., Ng, H.L., Theil, E., Alber, T., Bhattasali, O.
PDB entry 3kaa: Structure of Tim-3 in complex with phosphatidylserine
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.002 Å
Deposited: 2009-10-19
Authors: Ballesteros, A., Santiago, C., Casasnovas, J.M.
PDB entry 3kab: Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2009-10-19
Authors: Baker, L.M., Dokurno, P., Robinson, D.A., Surgenor, A.E., Murray, J.B., Potter, A.J., Moore, J.D.
PDB entry 3kac: Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-19
Authors: Baker, L.M., Dokurno, P., Robinson, D.A., Surgenor, A.E., Murray, J.B., Potter, A.J., Moore, J.D.
PDB entry 3kad: Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-10-19
Authors: Baker, L.M., Dokurno, P., Robinson, D.A., Surgenor, A.E., Murray, J.B., Potter, A.J., Moore, J.D.
PDB entry 3kae: Cdc27 N-terminus
Classification: PROTEIN BINDING
Source organism: Encephalitozoon cuniculi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.298 Å
Deposited: 2009-10-19
Authors: Barford, D., Zhang, Z., Roe, S.M.
PDB entry 3kaf: Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-10-19
Authors: Baker, L.M., Dokurno, P., Robinson, D.A., Surgenor, A.E., Murray, J.B., Potter, A.J., Moore, J.D.
PDB entry 3kag: Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-19
Authors: Baker, L.M., Dokurno, P., Robinson, D.A., Surgenor, A.E., Murray, J.B., Potter, A.J., Moore, J.D.
PDB entry 3kah: Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-10-19
Authors: Baker, L.M., Dokurno, P., Robinson, D.A., Surgenor, A.E., Murray, J.B., Potter, A.J., Moore, J.D.
PDB entry 3kai: Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-19
Authors: Baker, L.M., Dokurno, P., Robinson, D.A., Surgenor, A.E., Murray, J.B., Potter, A.J., Moore, J.D.
PDB entry 3kaj: Apoenzyme structure of homoglutathione synthetase from Glycine max in open conformation
Classification: LIGASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-19
Authors: Galant, A., Arkus, K.A.J., Zubieta, C., Cahoon, R.E., Jez, J.M.
PDB entry 3kak: Structure of homoglutathione synthetase from Glycine max in open conformation with gamma-glutamyl-cysteine bound.
Classification: LIGASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2009-10-19
Authors: Galant, A., Arkus, K.A.J., Zubieta, C., Cahoon, R.E., Jez, J.M.
PDB entry 3kal: Structure of homoglutathione synthetase from Glycine max in closed conformation with homoglutathione, ADP, a sulfate ion, and three magnesium ions bound
Classification: LIGASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-19
Authors: Galant, A., Arkus, K.A.J., Zubieta, C., Cahoon, R.E., Jez, J.M.
PDB entry 3kam: Hen Egg White Lysozyme Derivatized with rhenium(I) diaquatricarbonyl cation
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2009-10-19
Authors: Rowlett, R.S.
PDB entry 3kan: D-dopachrome tautomerase (D-DT)/macrophage migration inhibitory factor 2 (MIF2) complexed with inhibitor 4-IPP
Classification: CYTOKINE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2009-10-19
Authors: Zierow, S., Lolis, E.
PDB entry 3kao: Crystal structure of tagatose 1,6-diphosphate aldolase from Staphylococcus aureus
Classification: LYASE
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-19
Authors: Chang, C., Marshall, N., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3kap: Flavodoxin from Desulfovibrio desulfuricans ATCC 27774 (oxidized form)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-10-19
Authors: Romero, A., Caldeira, J., LeGall, J., Moura, I., Moura, J.J.G., Romao, M.J.
PDB entry 3kaq: Flavodoxin from D. desulfuricans (semireduced form)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2009-10-19
Authors: Romero, A., Caldeira, J., LeGall, J., Moura, I., Moura, J.J.G., Romao, M.J.
PDB entry 3kar: THE MOTOR DOMAIN OF KINESIN-LIKE PROTEIN KAR3, A SACCHAROMYCES CEREVISIAE KINESIN-RELATED PROTEIN
Classification: CONTRACTILE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1997-11-26
Authors: Gulick, A.M., Song, H., Endow, S., Rayment, I.
PDB entry 3kas: Machupo virus GP1 bound to human transferrin receptor 1
Classification: VIRAL PROTEIN/ENDOCYTOSIS
Source organism: Homo sapiens; Machupo virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-10-19
Authors: Abraham, J., Corbett, K.D., Harrison, S.C.
PDB entry 3kat: Crystal Structure of the CARD domain of the human NLRP1 protein, Northeast Structural Genomics Consortium Target HR3486E
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-10-19
Authors: Forouhar, F., Abashidze, M., Seetharaman, J., Mao, M., Xiao, R., Ciccosanti, C., Shastry, R., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3kav: Crystal Structure of THE MUTANT (L80M) PA2107 PROTEIN from Pseudomonas aeruginosa, Northeast Structural Genomics Consortium Target PaR198
Classification: structural genomics, unknown function
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-10-19
Authors: Forouhar, F., Neely, H., Seetharaman, J., Sahdev, S., Xiao, R., Ciccosanti, C., Foote, E.L., Zhao, L., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3kaw: Crystal Structure of PA2107 PROTEIN from Pseudomonas aeruginosa, Northeast Structural Genomics Consortium Target PaR198
Classification: structural genomics, unknown function
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-10-19
Authors: Forouhar, F., Neely, H., Seetharaman, J., Janjua, J., Xiao, R., Maglaqui, M., Wang, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3kay: Crystal structure of abscisic acid receptor PYL1
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-10-19
Authors: Zhou, X.E., Melcher, K., Ng, L.-M., Soon, F.-F., Xu, Y., Suino-Powell, K.M., Kovach, A., Li, J., Xu, H.E.
PDB entry 3kaz: Crystal structure of abscisic acid receptor PYL2
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-10-19
Authors: Zhou, X.E., Melcher, K., Ng, L.-M., Soon, F.-F., Xu, Y., Suino-Powell, K.M., Kovach, A., Li, J., Xu, H.E.
PDB entry 3kb0: Crystal structure of abscisic acid-bound PYL2
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-10-19
Authors: Zhou, X.E., Melcher, K., Ng, L.-M., Soon, F.-F., Xu, Y., Suino-Powell, K.M., Kovach, A., Li, J., Xu, H.E.
PDB entry 3kb1: Crystal Structure of the Nucleotide-binding protein AF_226 in complex with ADP from Archaeoglobus fulgidus, Northeast Structural Genomics Consortium Target GR157
Classification: Nucleotide binding protein
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-10-19
Authors: Forouhar, F., Lew, S., Abashidze, M., Seetharaman, J., Mao, M., Xiao, R., Ciccosanti, C., Wang, H., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 3kb2: Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256
Classification: structural genomics, unknown function
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-10-20
Authors: Forouhar, F., Friedman, D., Seetharaman, J., Janjua, J., Xiao, R., Cunningham, K., Ma, L., Ho, C., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3kb3: Crystal structure of abscisic acid-bound PYL2 in complex with HAB1
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-10-20
Authors: Zhou, X.E., Melcher, K., Soon, F.-F., Ng, L.-M., Xu, Y., Suino-Powell, K.M., Kovach, A., Li, J., Xu, H.E.
PDB entry 3kb5: PRY-SPRY domain of human TRIM72
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-10-20
Authors: Park, E.Y., Kwon, O.-B., Jeong, B.-C., Song, H.K.
PDB entry 3kb6: Crystal structure of D-Lactate dehydrogenase from aquifex aeolicus complexed with NAD and Lactic acid
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2009-10-20
Authors: Antonyuk, S.V., Strange, R.W., Ellis, M.J., Bessho, Y., Kuramitsu, S., Yokoyama, S., Hasnain, S.S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3kb7: Crystal structure of Polo-like kinase 1 in complex with a pyrazoloquinazoline inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-10-20
Authors: Bossi, R.T., Bertrand, J.A.
PDB entry 3kb8: 2.09 Angstrom resolution structure of a hypoxanthine-guanine phosphoribosyltransferase (hpt-1) from Bacillus anthracis str. 'Ames Ancestor' in complex with GMP
Classification: TRANSFERASE
Source organism: Bacillus anthracis str.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2009-10-20
Authors: Halavaty, A.S., Minasov, G., Shuvalova, L., Dubrovska, I., Winsor, J., Papazisi, L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 3kb9: Epi-isozizaene synthase: Complex with Mg, inorganic pyrophosphate and benzyl triethyl ammonium cation
Classification: LYASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.598 Å
Deposited: 2009-10-20
Authors: Aaron, J.A., Lin, X., Cane, D.E., Christianson, D.W.
PDB entry 3kba: Progesterone receptor bound to sulfonamide pyrrolidine partial agonist
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-20
Authors: Kallander, L.S., Washburn, D.G., Williams, S.P., Madauss, K.P.
PDB entry 3kbb: Crystal structure of putative beta-phosphoglucomutase from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima msb8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2009-10-20
Authors: Strange, R.W., Antonyuk, S.V., Ellis, M.J., Bessho, Y., Kuramitsu, S., Yokoyama, S., Hasnain, S.S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3kbc: Crystal structure of GltPh K55C-A364C mutant crosslinked with divalent mercury
Classification: TRANSPORT PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2009-10-20
Authors: Reyes, N., Ginter, C., Boudker, O.
PDB entry 3kbd: MUTATED NF KAPPA-B SITE, BI MODEL
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 1998-11-30
Authors: Tisne, C., Hartmann, B., Delepierre, M.
PDB entry 3kbe: Metal-free C. elegans Cu,Zn Superoxide Dismutase
Classification: OXIDOREDUCTASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2009-10-20
Authors: Pakhomova, O.N., Taylor, A.B., Schuermann, J.P., Culotta, V.L., Hart, P.J.
PDB entry 3kbf: C. elegans Cu,Zn Superoxide Dismutase
Classification: OXIDOREDUCTASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2009-10-20
Authors: Pakhomova, O.N., Taylor, A.B., Schuermann, J.P., Culotta, V.L., Hart, P.J.
PDB entry 3kbg: Crystal structure of the 30S ribosomal protein S4e from Thermoplasma acidophilum. Northeast Structural Genomics Consortium Target TaR28.
Classification: RIBOSOMAL PROTEIN
Source organism: Thermoplasma acidophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-20
Authors: Vorobiev, S.M., Su, M., Seetharaman, J., Belote, R.L., Ciccosanti, C., Patel, D., Liu, J., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3kbh: Crystal structure of NL63 respiratory coronavirus receptor-binding domain complexed with its human receptor
Classification: HYDROLASE
Source organism: Homo sapiens; Human coronavirus NL63
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2009-10-20
Authors: Wu, K., Li, W., Peng, G., Li, F.
PDB entry 3kbj: Room temperature X-ray structure of apo-D-Xylose Isomerase
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-20
Authors: Kovalevsky, A.Y., Hanson, L., Langan, P.
PDB entry 3kbk: Epi-isozizaene synthase complexed with Hg
Classification: LYASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-20
Authors: Aaron, J.A., Lin, X., Cane, D.E., Christianson, D.W.
PDB entry 3kbl: Crystal structure of the GLD-1 homodimerization domain from Caenorhabditis elegans N169A mutant at 2.28 A resolution
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2009-10-20
Authors: Beuck, C., Szymczyna, B.R., Kerkow, D.E., Carmel, A.B., Columbus, L., Stanfield, R.L., Williamson, J.R.
PDB entry 3kbm: Room Temperature X-ray structure of D-Xylose Isomerase complexed with 2Cd(2+) co-factors and d12-D-alpha-glucose in the cyclic form
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-20
Authors: Kovalevsky, A.Y., Hanson, L., Langan, P.
PDB entry 3kbn: Room temperature structure of D-Xylose Isomerase in complex with 2Ni(2+) co-factors and d12-D-glucose in the linear form
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2009-10-20
Authors: Kovalevsky, A.Y., Hanson, L., Langan, P.
PDB entry 3kbo: 2.14 Angstrom Crystal Structure of Putative Oxidoreductase (ycdW) from Salmonella typhimurium in Complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2009-10-20
Authors: Minasov, G., Wawrzak, Z., Skarina, T., Onopriyenko, O., Papazisi, L., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 3kbp: KIDNEY BEAN PURPLE ACID PHOSPHATASE
Classification: HYDROLASE (PHOSPHORIC MONOESTER)
Source organism: Phaseolus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1995-10-02
Authors: Klabunde, T., Strater, N., Krebs, B.
PDB entry 3kbq: The crystal structure of the protein CinA with unknown function from Thermoplasma acidophilum
Classification: structural genomics, unknown function
Source organism: Thermoplasma acidophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-20
Authors: Zhang, R., Li, H., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3kbr: The crystal structure of cyclohexadienyl dehydratase precursor from Pseudomonas aeruginosa PA01
Classification: LYASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.659 Å
Deposited: 2009-10-20
Authors: Tan, K., Marshall, N., Buck, K., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3kbs: Room Temperature X-ray structure of D-Xylose Isomerase in complex with 2Cd(2+) co-factors
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-20
Authors: Kovalevsky, A.Y., Hanson, L., Langan, P.
PDB entry 3kbt: Crystal structure of the ankyrin binding domain of human erythroid beta spectrin (repeats 13-15) in complex with the spectrin binding domain of human erythroid ankyrin (ZU5-ANK)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2009-10-20
Authors: Ipsaro, J.J., Mondragon, A.
PDB entry 3kbu: Crystal structure of the ankyrin binding domain of human erythroid beta spectrin (repeats 13-15) in complex with the spectrin binding domain of human erythroid ankyrin (ZU5-ANK), EMTS derivative
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2009-10-20
Authors: Ipsaro, J.J., Mondragon, A.
PDB entry 3kbv: Room temperature structure of D-Xylose Isomerase in complex with 2Ni(2+) co-factors
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-20
Authors: Kovalevsky, A.Y., Hanson, L., Langan, P.
PDB entry 3kbw: Room temperature X-ray mixed-metal structure of D-Xylose Isomerase in complex with Ni(2+) and Mg(2+) co-factors
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-10-20
Authors: Kovalevsky, A.Y., Hanson, L., Langan, P.
PDB entry 3kbx: Human macrophage inflammatory protein-1 alpha L3M_V63M
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.652 Å
Deposited: 2009-10-20
Authors: Guo, Q., Ren, M., Tang, W.-J.
PDB entry 3kby: Crystal structure of hypothetical protein from Staphylococcus aureus
Classification: UNKNOWN FUNCTION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-20
Authors: Lam, R., Thompson, C.M., Battaile, K.P., Romanov, V., Kisselman, G., Gordon, E., Pai, E.F., Chirgadze, N.Y.
PDB entry 3kbz: Crystal structure of human liver FBPase in complex with tricyclic inhibitor 6
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2009-10-20
Authors: Takahashi, M., Sone, J., Hanzawa, H.
PDB entry 3kc0: Crystal structure of human liver FBPase in complex with tricyclic inhibitor 10b
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-10-20
Authors: Takahashi, M., Sone, J., Hanzawa, H.
PDB entry 3kc1: Crystal structure of human liver FBPase in complex with tricyclic inhibitor 19a
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2009-10-20
Authors: Takahashi, M., Sone, J., Hanzawa, H.
PDB entry 3kc2: Crystal structure of mitochondrial HAD-like phosphatase from Saccharomyces cerevisiae
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2009-10-20
Authors: Nocek, B., Evdokimova, E., Kuznetsova, K., Iakunine, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3kc3: MK2 complexed to inhibitor N4-(7-(benzofuran-2-yl)-1H-indazol-5-yl)pyrimidine-2,4-diamine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-10-20
Authors: Argiriadi, M.A., Talanian, R.V., Borhani, D.W.
PDB entry 3kc6: Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/viet nam/1203/2004 (h5n1)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-10-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3kcc: Crystal structure of D138L mutant of Catabolite Gene Activator Protein
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2009-10-21
Authors: Tao, W.B., Gao, Z.Q., Zhou, J.H., Dong, Y.H., Yu, S.N.
PDB entry 3kce: Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-21
Authors: Baker, L.M., Dokurno, P., Robinson, D.A., Surgenor, A.E., Murray, J.B., Potter, A.J., Moore, J.D.
PDB entry 3kcf: Crystal structure of TGFbRI complexed with a pyrazolone inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-10-21
Authors: Boriack-Sjodin, P.A.
PDB entry 3kcg: Crystal structure of the antithrombin-factor IXa-pentasaccharide complex
Classification: HYDROLASE, HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-10-21
Authors: Huntington, J.A., Johnson, D.J.D.
PDB entry 3kch: Baranase crosslinked by glutaraldehyde
Classification: HYDROLASE
Source organism: Bacillus amyloliquefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2009-10-21
Authors: Prange, T., Salem, M., Mauguen, Y.
PDB entry 3kci: The third RLD domain of HERC2
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-21
Authors: Walker, J.R., Qiu, L., Vesterberg, A., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S.
PDB entry 3kcj: Room temperature neutron structure of apo-D-Xylose Isomerase (refined jointly with X-ray structure 3KBJ)
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: NEUTRON DIFFRACTION, X-RAY DIFFRACTION
Deposited: 2009-10-21
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 3kck: A Novel Chemotype of Kinase Inhibitors
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-10-21
Authors: Zuccola, H.J., Wang, T., Ledeboer, M.W.
PDB entry 3kcl: Room temperature neutron structure of D-Xylose Isomerase in complex with two Cd2+ cations and d12-D-alpha-glucose in the ring form (refined jointly with X-ray structure 3KBM)
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: NEUTRON DIFFRACTION, X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-21
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 3kcm: The crystal structure of thioredoxin protein from Geobacter metallireducens
Classification: OXIDOREDUCTASE
Source organism: Geobacter metallireducens GS-15
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2009-10-21
Authors: Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3kcn: The crystal structure of adenylate cyclase from Rhodopirellula baltica
Classification: LYASE
Source organism: Rhodopirellula baltica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2009-10-21
Authors: Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3kco: Room temperature neutron structure of D-Xylose Isomerase in complex with two Ni2+ cations and d12-D-glucose in the linear form (refined jointly with X-ray structure 3KBN)
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: NEUTRON DIFFRACTION, X-RAY DIFFRACTION
Deposited: 2009-10-21
Authors: Kovalevsky, A.Y., Langan, P.
PDB entry 3kcp: Crystal structure of interacting Clostridium thermocellum multimodular components
Classification: STRUCTURAL PROTEIN
Source organism: Clostridium thermocellum ATCC 27405
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2009-10-21
Authors: Adams, J.J., Currie, M.A., Bayer, E.A., Jia, Z., Smith, S.P.
PDB entry 3kcq: Crystal structure of phosphoribosylglycinamide formyltransferase from anaplasma phagocytophilum
Classification: TRANSFERASE
Source organism: Anaplasma phagocytophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-10-21
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3kcs: Crystal structure of PAmCherry1 in the dark state
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-10-21
Authors: Malashkevich, V.N., Subach, F.V., Zencheck, W.D., Xiao, H., Filonov, G.S., Almo, S.C., Verkhusha, V.V.
PDB entry 3kct: CRYSTAL STRUCTURE OF PAmCherry1 in the photoactivated state
Classification: FLUORESCENT PROTEIN
Source organism: Discosoma sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2009-10-21
Authors: Malashkevich, V.N., Subach, F.V., Zencheck, W.D., Xiao, H., Filonov, G.S., Almo, S.C., Verkhusha, V.V.
PDB entry 3kcu: Structure of formate channel
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.243 Å
Deposited: 2009-10-22
Authors: Wang, Y., Huang, Y., Wang, J., Yan, N., Shi, Y.
PDB entry 3kcv: Structure of formate channel
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.198 Å
Deposited: 2009-10-22
Authors: Wang, Y., Huang, Y., Wang, J., Yan, N., Shi, Y.
PDB entry 3kcw: Crystal structure of Ganoderma fungal immunomodulatory protein, GMI
Classification: IMMUNE SYSTEM
Source organism: Ganoderma microsporum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-22
Authors: Hsu, M.F., Wang, A.H.J., Yang, C.S., Huang, C.T., Hseu, R.S., Lin, C.W., Wu, M.Y., Huang, C.S., Fu, H.Y.
PDB entry 3kcx: Factor inhibiting HIF-1 alpha in complex with Clioquinol
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-10-22
Authors: Moon, H., Han, S., Choe, J.
PDB entry 3kcy: Factor inhibiting HIF-1 alpha in complex with 8-hydroxyquinoline
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2009-10-22
Authors: Moon, H., Han, S., Choe, J.
PDB entry 3kcz: Human poly(ADP-ribose) polymerase 2, catalytic fragment in complex with an inhibitor 3-aminobenzamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-22
Authors: Karlberg, T., Schutz, P., Arrowsmith, C.H., Berglund, H., Bountra, C., Collins, R., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, A., Johansson, I., Kallas, A., Kotenyova, T., Kotzsch, A., Kraulis, P., Nielsen, T.K., Moche, M., Nordlund, P., Nyman, T., Persson, C., Roos, A.K., Siponen, M.I., Thorsell, A.G., Tresaugues, L., Van Den Berg, S., Weigelt, J., Welin, M., Wisniewska, M., Schuler, H., Structural Genomics Consortium (SGC)
PDB entry 3kd0: Human thioredoxin C35S,C62S,C69S,C73S mutant showing cadmium chloride bound to the active site
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-10-22
Authors: Hall, G., Emsley, J.
PDB entry 3kd1: Closed binary complex of an RB69 gp43 fingers domain mutant complexed with an acyclic GMP terminated primer template pair.
Classification: TRANSFERASE/DNA
Source organism: Enterobacteria phage RB69; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2009-10-22
Authors: Zahn, K.E., Doublie, S.
PDB entry 3kd2: Crystal structure of the CFTR inhibitory factor Cif
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa UCBPP-PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-22
Authors: Bahl, C.D., Madden, D.R.
PDB entry 3kd3: Crystal structure of a phosphoserine phosphohydrolase-like protein from Francisella tularensis subsp. tularensis SCHU S4
Classification: UNKNOWN FUNCTION
Source organism: Francisella tularensis subsp. tularensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-10-22
Authors: Nocek, B., Zhou, M., Peterson, S., Anderson, W., Joachimiak, A., CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 3kd4: CRYSTAL STRUCTURE OF A PUTATIVE PROTEASE (BDI_1141) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.00 A RESOLUTION
Classification: HYDROLASE
Source organism: Parabacteroides distasonis ATCC 8503
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-22
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3kd5: Closed ternary complex of an RB69 gp43 fingers domain mutant complexed with an acyclic GMP terminated primer template pair and phosphonoformic acid.
Classification: TRANSFERASE/DNA
Source organism: Enterobacteria phage RB69; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2009-10-22
Authors: Zahn, K.E., Doublie, S.
PDB entry 3kd6: Crystal Structure of Nucleoside Kinase from Chlorobium tepidum in Complex with AMP
Classification: TRANSFERASE
Source organism: Chlorobaculum tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2009-10-22
Authors: Satyanarayana, L., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3kd7: Designed TPR module (CTPR390) in complex with its peptide-ligand (Hsp90 peptide)
Classification: DE NOVO PROTEIN
Source organism: UNIDENTIFIED; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2009-10-22
Authors: Cortajarena, A.L., Wang, J., Regan, L.
PDB entry 3kd8: Cofactor-Independent Phosphoglycerate mutase from Thermoplasma Acidophilum DSM 1728
Classification: ISOMERASE
Source organism: Thermoplasma acidophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-10-22
Authors: Joachimiak, A., Duke, N.E.C., Marshall, N., Buck, K., Midwest Center for Structural Genomics (MCSG)
PDB entry 3kd9: Crystal structure of pyridine nucleotide disulfide oxidoreductase from Pyrococcus horikoshii
Classification: OXIDOREDUCTASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2009-10-22
Authors: Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3kda: Crystal structure of the CFTR inhibitory factor Cif with the H269A mutation
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa UCBPP-PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-10-22
Authors: Bahl, C.D., Madden, D.R.
PDB entry 3kdb: Crystal Structure of HIV-1 Protease (Q7K, L33I, L63I) in Complex with KNI-10006
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2009-10-22
Authors: Chufan, E.E., Lafont, V., Freire, E., Amzel, L.M.
PDB entry 3kdc: Crystal Structure of HIV-1 Protease (Q7K, L33I, L63I) in Complex with KNI-10074
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-10-22
Authors: Chufan, E.E., Kawasaki, Y., Freire, E., Amzel, L.M.
PDB entry 3kdd: Crystal Structure of HIV-1 Protease (Q7K, L33I, L63I) in Complex with KNI-10265
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus type 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-10-22
Authors: Chufan, E.E., Kawasaki, Y., Freire, E., Amzel, L.M.
PDB entry 3kde: Crystal structure of the THAP domain from D. melanogaster P-element transposase in complex with its natural DNA binding site
Classification: DNA BINDING PROTEIN/DNA
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2009-10-22
Authors: Sabogal, A., Lyubimov, A.Y., Berger, J.M., Rio, D.C.
PDB entry 3kdf: X-ray Crystal Structure of the Human Replication Protein A Complex from Wheat Germ Cell Free Expression
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.975 Å
Deposited: 2009-10-22
Authors: Burgie, E.S., Bingman, C.A., Phillips Jr., G.N., Fox, B.G., Makino, S.-I., Center for Eukaryotic Structural Genomics (CESG)
PDB entry 3kdg: C-terminal domain of Bacillus subtilis MutL crystal form II
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-22
Authors: Guarne, A., Pillon, M.C.
PDB entry 3kdh: Structure of ligand-free PYL2
Classification: HORMONE RECEPTOR
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.653 Å
Deposited: 2009-10-22
Authors: Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.
PDB entry 3kdi: Structure of (+)-ABA bound PYL2
Classification: HORMONE RECEPTOR
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.379 Å
Deposited: 2009-10-22
Authors: Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.
PDB entry 3kdj: Complex structure of (+)-ABA-bound PYL1 and ABI1
Classification: HYDROLASE/Hormone Receptor
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.878 Å
Deposited: 2009-10-23
Authors: Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.
PDB entry 3kdk: Structure of the C-terminal domain of Bacillus subtilis MutL bound to Zn2+
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2009-10-23
Authors: Guarne, A., Pillon, M.C.
PDB entry 3kdm: Crystal Structure of Human Anti-steroid Fab 5F2 in Complex with Testosterone
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-10-23
Authors: Niemi, M.H., Rouvinen, J.
PDB entry 3kdn: Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP
Classification: LYASE
Source organism: Thermococcus kodakaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2009-10-23
Authors: Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
PDB entry 3kdo: Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
Classification: LYASE
Source organism: Thermococcus kodakaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2009-10-23
Authors: Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
PDB entry 3kdp: Crystal structure of the sodium-potassium pump
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2009-10-23
Authors: Morth, J.P., Pedersen, B.P., Nissen, P.
PDB entry 3kdq: Crystal structure of a functionally unknown conserved protein from Corynebacterium diphtheriae.
Classification: structural genomics, unknown function
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2009-10-23
Authors: Zhang, R., Wu, R., Tan, K., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3kdr: The Crystal Structure of a HK97 Family Phage Portal Protein from Corynebacterium diphtheriae to 2.9A
Classification: structural genomics, unknown function
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-10-23
Authors: Nocek, B., Stein, A.J., Mulligan, R., Duggan, E., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3kds: apo-FtsH crystal structure
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2009-10-23
Authors: Bieniossek, C., Niederhauser, B., Baumann, U.
PDB entry 3kdt: Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-(methoxycarbonyl)glycine
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-10-23
Authors: Muckelbauer, J.K.
PDB entry 3kdu: Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-((4-methylphenoxy)carbonyl)glycine
Classification: HORMONE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2009-10-23
Authors: Muckelbauer, J.K.
PDB entry 3kdw: Crystal structure of Putative sugar binding protein (YP_001300177.1) from Bacteroides vulgatus ATCC 8482 at 1.70 A resolution
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides vulgatus ATCC 8482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-10-23
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3kdy: X-ray crystal structure of tyrosine aminomutase mutant construct
Classification: LYASE
Source organism: Streptomyces globisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-10-23
Authors: Cooke, H.A., Bruner, S.D.
PDB entry 3kdz: X-ray crystal structure of a tyrosine aminomutase mutant construct with bound ligand
Classification: LYASE
Source organism: Streptomyces globisporus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-10-23
Authors: Cooke, H.A., Bruner, S.D.
PDB entry 3ke0: Crystal structure of N370S Glucocerebrosidase at acidic pH.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-10-23
Authors: Wei, R.R., Boucher, S., Pan, C.Q., Edmunds, T.
PDB entry 3ke1: Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei in complex with a fragment-nucleoside fusion D000161829
Classification: LYASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-10-23
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3ke2: CRYSTAL STRUCTURE OF a DUF2131 family protein (SAMA_2911) FROM SHEWANELLA AMAZONENSIS SB2B AT 2.50 A RESOLUTION
Classification: UNKNOWN FUNCTION
Source organism: Shewanella amazonensis SB2B
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-10-23
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3ke3: Crystal structure of Putative serine-pyruvate aminotransferase (YP_263484.1) from PSYCHROBACTER ARCTICUM 273-4 at 2.20 A resolution
Classification: TRANSFERASE
Source organism: Psychrobacter arcticus 273-4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-10-23
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3ke4: Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus
Classification: TRANSFERASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-23
Authors: Park, A.K., Moon, J.H., Chi, Y.M.
PDB entry 3ke5: Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus in a complex with ATP
Classification: TRANSFERASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-10-23
Authors: Park, A.K., Moon, J.H., Chi, Y.M.
PDB entry 3ke6: The crystal structure of the RsbU and RsbW domains of Rv1364c from Mycobacterium tuberculosis
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-10-24
Authors: King-Scott, J., Panjikar, S., Tucker, P.A.
PDB entry 3ke7: Crystal structure of putative ketosteroid isomerase (YP_001303366.1) from Parabacteroides distasonis ATCC 8503 at 1.45 A resolution
Classification: ISOMERASE
Source organism: Parabacteroides distasonis ATCC 8503
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2009-10-24
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3ke8: Crystal structure of IspH:HMBPP-complex
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-10-24
Authors: Groll, M., Graewert, T., Span, I., Eisenreich, W., Bacher, A.
PDB entry 3ke9: Crystal structure of IspH:Intermediate-complex
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-10-24
Authors: Groll, M., Graewert, T., Span, I., Eisenreich, W., Bacher, A.
PDB entry 3kea: Structure function studies of vaccinia virus host-range protein K1 reveal a novel ankyrin repeat interaction surface for K1s function
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-10-25
Authors: Li, Y.