LiteFold/PDB huggingface dataset:
PDB entry 8uhi: Structure of the far-red light-absorbing allophycocyanin core expressed during FaRLiP
Classification: PHOTOSYNTHESIS
Source organism: Synechococcus sp. PCC 7335
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2023-10-09
Authors: Gisriel, C.J., Bryant, D.A., Brudvig, G.W., Shen, G.
PDB entry 8uhj: anti-Phosphohistidine Fab hSC44.ck.20.N32F
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-10-09
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uhk: Human PU.1 ETS-Domain (165-270) Bound to d(AAAATAAAAGGAAGTG)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2023-10-09
Authors: Terrell, J.R., Poon, G.M.K., Wilson, W.D.
PDB entry 8uhl: ATAD2B bromodomain in complex with histone H4 acetylated at lysine 12
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-10-09
Authors: Phillips, M., Montgomery, C., Nix, J.C., Glass, K.C.
PDB entry 8uhn: anti-Phosphohistidine Fab hSC44.ck.20.N32F with 3pHis peptide
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-10-09
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uho: Crystal structure of SARS CoV-2 3CL protease in complex with GSK4365096A
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-10-09
Authors: Concha, N.O., Williams, S.P.
PDB entry 8uhp: anti-Phosphohistidine Fab hSC44.ck.20.N32F with 3pTZA peptide
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-10-09
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uhs: anti-Phosphohistidine Fab hSC44.ck.20.elbow bound to phosphate
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-10-09
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uht: anti-Phosphohistidine Fab hSC44.ck.20.elbow bound to Glu H1
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-10-09
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uhv: X-ray crystal structure of Toxoplasma gondii Apo GalNAc-T3
Classification: TRANSFERASE
Source organism: Toxoplasma gondii ME49
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-10-09
Authors: Kumar, P., Samara, N.L.
PDB entry 8uhw: The structure of the Clostridium thermocellum AdhE spirosome
Classification: OXIDOREDUCTASE
Source organism: Acetivibrio thermocellus DSM 1313
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-10-09
Authors: Ziegler, S.J., Gruber, J.N.
PDB entry 8uhz: X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with Mn2+
Classification: TRANSFERASE
Source organism: Toxoplasma gondii ME49
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-10-09
Authors: Kumar, P., Samara, N.L.
PDB entry 8ui0: Structure of poised transcription complex Pol II-DSIF-NELF - pre-translocated
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-09
Authors: Vos, S.M., Su, B.G.
PDB entry 8ui1: X-ray crystal structure of Toxoplasma gondii GalNAc-T3 at pH 7.3
Classification: TRANSFERASE
Source organism: Toxoplasma gondii ME49
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2023-10-09
Authors: Kumar, P., Samara, N.L.
PDB entry 8ui2: T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-10-09
Authors: Castells-Graells, R., Meador, K., Sawaya, M.R., Yeates, T.O.
PDB entry 8ui6: X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
Classification: TRANSFERASE
Source organism: Toxoplasma gondii ME49; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-10-10
Authors: Kumar, P., Samara, N.L.
PDB entry 8ui7: Cryo-EM map of human clmap-clamp loader ATAD5-RFC-gapped PCNA complex in intermediate state 3
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-10-10
Authors: Wang, F., He, Q., Li, H.
PDB entry 8ui8: Cryo-EM map of human clamp-clamp loader ATAD5-RFC-two PCNAs complex in intermediate state 3
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-10
Authors: Wang, F., He, Q., Li, H.
PDB entry 8ui9: Cryo-EM map of human clamp-clamp loader ATAD5-RFC-cracked PCNA complex in intermediate state 2
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-10
Authors: Wang, F., He, Q., Li, H.
PDB entry 8uia: Crystal structure of SARS CoV-2 3CL protease in complex with GSK4365097A
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-10
Authors: Concha, N.O., Williams, S.P.
PDB entry 8uib: Structure of the human INTS9-INTS11-BRAT1 complex
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-10-10
Authors: Lin, M., Tong, L.
PDB entry 8uic: Structure of the Drosophila IntS11-CG7044(dBRAT1) complex
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2023-10-10
Authors: Lin, M., Tong, L.
PDB entry 8uid: Archaeal highly thermostable GH35 family beta-galactosidase from Desulfurococcus amyloliticus
Classification: HYDROLASE
Source organism: Desulfurococcus amylolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-10-10
Authors: Pichkur, E.B., Rychkov, G.N.
PDB entry 8uie: Structure of recombinantly assembled murine alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-10
Authors: Zhou, Y., Sokratian, A.
PDB entry 8uif: Crystal structure of SARS CoV-2 3CL protease in complex with GSK4365096A
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-10-10
Authors: Concha, N.O., Williams, S.P.
PDB entry 8uig: anti-Phosphohistidine Fab hSC44.ck.20 with 3pHis peptide
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-10
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uih: anti-Phosphohistidine Fab hSC44.ck.20 with 3pTza peptide
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-10-10
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uii: Cryo-EM map of human clamp-clamp loader ATAD5-RFC-closed PCNA complex in intermediate state 1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-10-10
Authors: Wang, F., He, Q., Li, H.
PDB entry 8uik: In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-10-10
Authors: Wei, Z., Yong, X.
PDB entry 8uin: Structure of the C3bBb-albicin complex
Classification: IMMUNE SYSTEM
Source organism: Anopheles albimanus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2023-10-10
Authors: Andersen, J.F., Lei, H.
PDB entry 8uio: anti-Phosphohistidine Fab hSC44.ck
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-10
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uip: Cryo-EM Structure of Human Ninjurin1 curved oligomer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-10-10
Authors: David, L., Wu, H.
PDB entry 8uiq: H47Q NicC with 2-mercaptopyridine ligand
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida KT2440
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-10-10
Authors: Hicks, K.A., Perry, K., Turlington, Z.R., Vaz Ferreira de Macedo, S.
PDB entry 8uir: SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.16)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-10
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8uis: Structure of transcription complex Pol II-DSIF-NELF-TFIIS
Classification: TRANSCRIPTION/RNA/DNA
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-10-10
Authors: Su, B.G., Vos, S.M.
PDB entry 8uit: anti-Phosphohistidine Fab hSC44.ck with 3pHis peptide
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-10-10
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8uiu: Structure of an FMO from Bacillus niacini
Classification: OXIDOREDUCTASE
Source organism: Neobacillus niacini
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2023-10-10
Authors: Hicks, K.A., Perry, K.
PDB entry 8uiv: H47Q NicC with bound FAD
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida KT2440
Experimental method: X-RAY DIFFRACTION
Resolution: 1.511 Å
Deposited: 2023-10-10
Authors: Hicks, K.A., Perry, K.
PDB entry 8uiw: yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N
Classification: RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2023-10-10
Authors: Krochmal, D., Lewicka, A., Piccirilli, J.A.
PDB entry 8uix: FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, boronic acid-based compound Y43 bound
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-10-10
Authors: Fellner, M.
PDB entry 8uja: T33-fn10 - Designed Tetrahedral Protein Cage Using Fragment-based Hydrogen Bond Networks
Classification: DE NOVO PROTEIN
Source organism: Novosphingobium aromaticivorans DSM 12444; Sulfurisphaera tokodaii str. 7
Experimental method: X-RAY DIFFRACTION
Resolution: 6 Å
Deposited: 2023-10-11
Authors: Meador, K., Sawaya, M.R., Yeates, T.O.
PDB entry 8uje: X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
Classification: TRANSFERASE
Source organism: Toxoplasma gondii ME49
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-10-11
Authors: Kumar, P., Samara, N.L.
PDB entry 8ujf: X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
Classification: TRANSFERASE
Source organism: Toxoplasma gondii ME49; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2023-10-11
Authors: Kumar, P., Samara, N.L.
PDB entry 8ujg: X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and the mono-glycopeptide Srs13.2
Classification: TRANSFERASE
Source organism: Toxoplasma gondii ME49; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-10-11
Authors: Kumar, P., Samara, N.L.
PDB entry 8ujh: X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and a CST1 diglycopeptide.
Classification: TRANSFERASE
Source organism: Toxoplasma gondii ME49; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-10-11
Authors: Kumar, P., Samara, N.L.
PDB entry 8uji: anti-Phosphohistidine Fab hSC44.ck with 3pTza peptide
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-10-11
Authors: Kalagiri, R., Stanfield, R.L., Hunter, T., Wilson, I.A.
PDB entry 8ujl: Crystal structure of human CTDNEP1-NEP1R1 protein phosphatase complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-10-11
Authors: Gao, S., Airola, M.V.
PDB entry 8ujm: Crystal structure of human CTDNEP1-NEP1R1 protein phosphatase complex with magnesium
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.161 Å
Deposited: 2023-10-11
Authors: Gao, S., Airola, M.V.
PDB entry 8ujt: Crystal structure of human polymerase eta with incoming dAMPnPP nucleotide opposite urea lesion
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-10-11
Authors: Tomar, R., Egli, M., Stone, M.P.
PDB entry 8ujv: Crystal structure of human polymerase eta with incoming dCMPnPP nucleotide opposite urea lesion
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-10-11
Authors: Tomar, R., Egli, M., Stone, M.P.
PDB entry 8ujw: Crystal structure of the KETc7 antigen from Taenia solium
Classification: UNKNOWN FUNCTION
Source organism: Taenia solium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-10-11
Authors: Sotelo-Mundo, R.R., Gomez-Yanes, A.C., Lopez-Zavala, A.A., Ochoa-Leyva, A.
PDB entry 8ujx: Crystal structure of human polymerase eta with incoming dGMPnPP nucleotide opposite urea lesion
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-10-11
Authors: Tomar, R., Egli, M., Stone, M.P.
PDB entry 8ujy: Crystal structure of human WD repeat-containing protein 5 in complex with 4-(3,5-dimethoxybenzyl)-9-(4-fluoro-2-methylphenyl)-7-((2-imino-3-methyl-2,3-dihydro-1H-imidazol-1-yl)methyl)-3,4-dihydrobenzo[f][1,4]oxazepin-5(2H)-one (compound 8)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-10-11
Authors: Zhao, B., Amporndanai, K., Fesik, S.W.
PDB entry 8uk1: SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer consensus (S-RRAR-Omicron-XBB.1.16)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-11
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8uk2: The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 5 reconstruction)
Classification: VIRAL PROTEIN
Source organism: Simian rotavirus A strain RRV
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2023-10-12
Authors: De Sautu, M., Herrmann, T., Jenni, S., Harrison, S.C.
PDB entry 8uk3: The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 6 reconstruction)
Classification: VIRAL PROTEIN
Source organism: Simian rotavirus A strain RRV
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2023-10-12
Authors: De Sautu, M., Herrmann, T., Jenni, S., Harrison, S.C.
PDB entry 8uk4: Crystal structure of human polymerase eta with incoming dTMPnPP nucleotide opposite urea lesion
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2023-10-12
Authors: Tomar, R., Egli, M., Stone, M.P.
PDB entry 8uk5: Crystal structure of the bromodomain of human ATAD2B in complex with histone H4S1(ph)K5ac
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-10-12
Authors: Montgomery, C., Phillips, M., Nix, J.C., Glass, K.C.
PDB entry 8uk6: Candida albicans glutaminyl tRNA synthetase (GLN4) in complex with N-pyrimidinyl-beta-thiophenylacrylamide
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-10-12
Authors: Sychantha, D., Wright, G.D.
PDB entry 8uk7: Periplasmic domain of Escherichia coli CpxA
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-10-12
Authors: Glover, M.J.N., Murray, C.R.A., Edwards, R.A., Thede, G.L.
PDB entry 8uk9: Structure of T4 Bacteriophage clamp loader mutant D110C bound to the T4 clamp, primer-template DNA, and ATP analog
Classification: DNA BINDING PROTEIN/DNA
Source organism: Tequatrovirus T4; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-10-12
Authors: Marcus, K., Ghaffari-Kashani, S., Gee, C.L.
PDB entry 8ukb: In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-10-12
Authors: Wei, Z., Yong, X.
PDB entry 8ukc: Solution NMR Structure of the lasso peptide chlorolassin
Classification: UNKNOWN FUNCTION
Source organism: Lentzea jiangxiensis
Experimental method: SOLUTION NMR
Deposited: 2023-10-12
Authors: Saad, H., Zhu, L., Harris, L.A., Shelton, K.E., Mitchell, D.A.
PDB entry 8ukd: SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-10-12
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8uke: Crystal Structure of Norbelladine O-methyltransferase variant in complex with SAH
Classification: TRANSFERASE
Source organism: Narcissus aff. pseudonarcissus MK-2014
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-10-12
Authors: Kim, W., Zhang, Y.J.
PDB entry 8ukf: SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-EG.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-12
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8ukg: Solution NMR structure of the lasso peptide wygwalassin-A1
Classification: UNKNOWN FUNCTION
Source organism: Streptomyces katrae
Experimental method: SOLUTION NMR
Deposited: 2023-10-13
Authors: Saad, H., Zhu, L., Harris, L.A., Shelton, K.E., Mitchell, D.A.
PDB entry 8ukh: Crystal structure of Plasmodium falciparum CelTOS in complex with antibody 4h12
Classification: CELL INVASION
Source organism: Mus musculus; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2023-10-13
Authors: Tang, W.K., Tolia, N.H., Urusova, D.
PDB entry 8uki: Crystal structure of 04_A06 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-13
Authors: DeLaitsch, A.T., Gristick, H.B., Bjorkman, P.J.
PDB entry 8ukm: T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-10-14
Authors: Castells-Graells, R., Meador, K., Sawaya, M.R., Yeates, T.O.
PDB entry 8ukn: APO and AMP-PNP bound cAMP-dependent protein kinase A catalytic domain
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-10-14
Authors: Haji-Ghassemi, O., Van Petegem, F.
PDB entry 8uko: cAMP-dependent protein kinase A catalytic domain in complex with voltage gated calcium channel peptide ternary complex 2
Classification: TRANSFERASE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-10-14
Authors: Haji-Ghassemi, O., Van Petegem, F.
PDB entry 8ukp: cAMP-dependent protein kinase A catalytic domain in complex with voltage gated calcium channel peptide ternary complex 1
Classification: TRANSFERASE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-10-14
Authors: Haji-Ghassemi, O., Van Petegem, F.
PDB entry 8ukq: RNA polymerase II elongation complex with Fapy-dG lesion in apo state
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae S288C; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-10-15
Authors: Hou, P., Oh, J., Wang, D.
PDB entry 8ukr: RNA polymerase II elongation complex with Fapy-dG lesion soaking with ATP before chemistry
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Saccharomyces cerevisiae S288C; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.78 Å
Deposited: 2023-10-15
Authors: Hou, P., Oh, J., Wang, D.
PDB entry 8uks: RNA polymerase II elongation complex with Fapy-dG lesion soaking with CTP before chemistry
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-10-15
Authors: Hou, P., Oh, J., Wang, D.
PDB entry 8ukt: RNA polymerase II elongation complex with Fapy-dG lesion with AMP added
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2023-10-15
Authors: Hou, P., Oh, J., Wang, D.
PDB entry 8uku: RNA polymerase II elongation complex with Fapy-dG lesion with CMP added
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2023-10-15
Authors: Hou, P., Oh, J., Wang, D.
PDB entry 8ukv: Crystal structure of nanobody/VHH domain of 34E5 in complex with the extracellular region of the epidermal growth factor variant III (EGFRvIII)
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2023-10-15
Authors: Stayrook, S.E., Ferguson, K.M., Bagchi, A.
PDB entry 8ukw: Crystal structure the extracellular region of the epidermal growth factor receptor variant III (EGFRvIII) at pH 5.0
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-10-15
Authors: Stayrook, S.E., Ferguson, K.M.
PDB entry 8ukx: Crystal structure the extracellular region of the epidermal growth factor receptor variant III (EGFRvIII) at pH 7.0
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.301 Å
Deposited: 2023-10-15
Authors: Stayrook, S.E., Ferguson, K.M.
PDB entry 8uky: Crystal structure of BAK in complex with inhibiting antibody 14G6
Classification: APOPTOSIS/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.398 Å
Deposited: 2023-10-15
Authors: Miller, M.S., Czabotar, P.E.
PDB entry 8ukz: Structure of P450Blt from Micromonospora sp. MW-13 with E238A Mutation
Classification: OXIDOREDUCTASE
Source organism: Micromonospora sp. MW-13
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-10-15
Authors: Hansen, M.H., Cryle, M.J.
PDB entry 8ul0: Structure of rsKiiro using SSX
Classification: FLUORESCENT PROTEIN
Source organism: Lobophyllia hemprichii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-16
Authors: Baxter, J.M., van Thor, J.J.
PDB entry 8ul1: Structure of rsKiiro using SSX after illumination with 0.1 mJ/mm^2 of 405 nm light
Classification: FLUORESCENT PROTEIN
Source organism: Lobophyllia hemprichii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-16
Authors: Baxter, J.M., van Thor, J.J.
PDB entry 8ul2: Structure of rsKiiro using SSX after illumination with 0.53 mJ/mm^2 of 405 nm light
Classification: FLUORESCENT PROTEIN
Source organism: Lobophyllia hemprichii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-16
Authors: Baxter, J.M., van Thor, J.J.
PDB entry 8ul3: Structure of rsKiiro using SSX after illumination with 1.78 mJ/mm^2 of 405 nm light
Classification: FLUORESCENT PROTEIN
Source organism: Lobophyllia hemprichii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-16
Authors: Baxter, J.M., van Thor, J.J.
PDB entry 8ul4: Structure of rsKiiro using SSX after illumination with 6.74 mJ/mm^2 of 405 nm light
Classification: FLUORESCENT PROTEIN
Source organism: Lobophyllia hemprichii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-16
Authors: Baxter, J.M., van Thor, J.J.
PDB entry 8ul5: Structure of rsKiiro using SSX after illumination with 14.43 mJ/mm^2 of 405 nm light
Classification: FLUORESCENT PROTEIN
Source organism: Lobophyllia hemprichii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-16
Authors: Baxter, J.M., van Thor, J.J.
PDB entry 8ul6: LSD1-CoREST in complex with T16, long soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-10-16
Authors: Caroli, J., Mattevi, A.
PDB entry 8ul7: The structure of NanH in complex with Neu5Ac
Classification: HYDROLASE
Source organism: Clostridium perfringens ATCC 13124
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-10-16
Authors: Medley, B.J., Boraston, A.B.
PDB entry 8ul8: LSD1-CoREST in complex with T15, short soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2023-10-16
Authors: Caroli, J., Mattevi, A.
PDB entry 8ul9: Cholinephosphotransferase in complex with diacylglycerol
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-16
Authors: Roberts, J.R., Maeda, S., Ohi, M.D.
PDB entry 8ula: Lmo2839 ABC transporter substrate binding protein
Classification: SUGAR BINDING PROTEIN
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-16
Authors: Ripley, B.M., Radoshevich, L.
PDB entry 8ulb: LSD1-CoREST in complex with T17, long soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2023-10-16
Authors: Caroli, J., Mattevi, A.
PDB entry 8ulc: LSD1-CoREST in complex with T15, long soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2023-10-16
Authors: Caroli, J., Mattevi, A.
PDB entry 8uld: SARA CoV-2 3C-like protease in complex with GSK3487016A
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-10-16
Authors: Williams, S.P., Concha, N.O.
PDB entry 8ule: The structure of NanH in complex with Neu5,9Ac
Classification: HYDROLASE
Source organism: Clostridium perfringens ATCC 13124
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-10-16
Authors: Medley, B.J., Boraston, A.B.
PDB entry 8ulf: Crystal structure of Plasmodium vivax CelTOS in complex with antibody 7g7
Classification: CELL INVASION
Source organism: Mus musculus; Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-10-16
Authors: Tang, W.K., Tolia, N.H.
PDB entry 8ulg: Cryo-EM structure of bovine phosphodiesterase 6 bound to IBMX
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-16
Authors: Aplin, C., Cerione, R.A.
PDB entry 8ulh: Fab of RSV neutralizing antibody 1G12
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-10-16
Authors: Harshbarger, W.D., Andreano, E., Malito, E.
PDB entry 8ulj: Prefusion RSV F bound by neutralizing antibody 2E08
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Respiratory syncytial virus A2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-10-16
Authors: Harshbarger, W.D., Andreano, E., Malito, E.
PDB entry 8ulk: Prefusion RSV F bound by neutralizing antibody 1G12
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human respiratory syncytial virus A2; Respiratory syncytial virus A2
Experimental method: X-RAY DIFFRACTION
Resolution: 4.28 Å
Deposited: 2023-10-16
Authors: Harshbarger, W.D., Andreano, E., Malito, E.
PDB entry 8ulm: Chickpea (Cicer arientinum) nodule-specific cysteine-rich peptide NCR13: Solution NMR structure of the isomer with C4:C23, C15:C30, and C10:C28 disulfide bonds
Classification: ANTIFUNGAL PROTEIN
Source organism: Cicer arietinum
Experimental method: SOLUTION NMR
Deposited: 2023-10-16
Authors: Buchko, G.W., Zhou, M., Shah, D.M., Velivelli, S.L.S.
PDB entry 8ulr: Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Classification: Viral Protein/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-16
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 8uls: Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Classification: Viral Protein/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-10-16
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 8ult: Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Classification: Viral Protein/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-16
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 8ulu: Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Classification: Viral Protein/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-16
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 8ulz: LSD1-CoREST in complex with T18 and SNAG peptide
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2023-10-17
Authors: Caroli, J., Mattevi, A.
PDB entry 8um0: The structure of NanH in complex with Neu5,7,9Ac(2,6)-LAcNAc
Classification: HYDROLASE
Source organism: Clostridium perfringens ATCC 13124
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-10-17
Authors: Medley, B.J., Boraston, A.B.
PDB entry 8um1: Structure of the Carboxy terminus of Oleate Hydratase
Classification: LIPID TRANSPORT
Experimental method: SOLUTION NMR
Deposited: 2023-10-17
Authors: Grace, C.R., Radka, C.
PDB entry 8um2: Carboxy terminus of Oleate Hydratase in phosphate buffer
Classification: LIPID TRANSPORT
Experimental method: SOLUTION NMR
Deposited: 2023-10-17
Authors: Grace, C.R., Radka, C.
PDB entry 8um3: PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z203039992
Classification: HYDROLASE
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.925 Å
Deposited: 2023-10-17
Authors: Godoy, A.S., Noske, G.D., Fairhead, M., Lithgo, R.M., Koekemoer, L., Aschenbrenner, J.C., Balcomb, B.H., Marples, P.G., Ni, X., Tomlinson, C.W.E., Wild, C., Mesquita, N.C.M.R., Oliva, G., Fearon, D., Walsh, M.A., von Delft, F.
PDB entry 8um5: X-ray structure of human SHIP1 Ptase-C2 domains covalently bound to TREAT-AD (TAD) compound TAD-58547
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-10-17
Authors: Mesecar, A.D., Hamdani, A.K.
PDB entry 8um6: Structure of copper bound to YcnI W137F
Classification: METAL BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-10-17
Authors: Fisher, O.S., Silva, Y.R.O., Zheng, D.
PDB entry 8um7: Site-specific Aspartic Acid Dehydration and Isomerization in Streptococcal Protein GB1: Wild-type Protein
Classification: IMMUNE SYSTEM
Experimental method: SOLUTION NMR
Deposited: 2023-10-17
Authors: Heath, S.L., Guseman, A.J., Gronenborn, A.M., Horne, W.S.
PDB entry 8um9: Site-specific Aspartic Acid Dehydration and Isomerization in Streptococcal Protein GB1: D-Asp40 Variant
Classification: IMMUNE SYSTEM
Experimental method: SOLUTION NMR
Deposited: 2023-10-17
Authors: Heath, S.L., Guseman, A.J., Gronenborn, A.M., Horne, W.S.
PDB entry 8uma: Site-specific Aspartic Acid Dehydration and Isomerization in Streptococcal Protein GB1: D-isoAsp40 Variant
Classification: IMMUNE SYSTEM
Experimental method: SOLUTION NMR
Deposited: 2023-10-17
Authors: Heath, S.L., Guseman, A.J., Gronenborn, A.M., Horne, W.S.
PDB entry 8umb: Site-specific Aspartic Acid Dehydration and Isomerization in Streptococcal Protein GB1: L-Aspartyl Succinimide 40-41 Variant
Classification: IMMUNE SYSTEM
Experimental method: SOLUTION NMR
Deposited: 2023-10-17
Authors: Heath, S.L., Guseman, A.J., Gronenborn, A.M., Horne, W.S.
PDB entry 8umc: Deinococcus aerius TR0125 C-glucosyl deglycosidase (CGD), cryo-EM
Classification: LYASE
Source organism: Deinococcus aerius
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-10-17
Authors: Furlanetto, V., Kalyani, D.C., Kostelac, A., Haltrich, D., Hallberg, B.M., Divne, C.
PDB entry 8umd: Cryo-EM structure of a single subunit of a Counterclockwise-locked form of the Salmonella enterica Typhimurium flagellar C-ring.
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-10-17
Authors: Johnson, S., Deme, J.C., Lea, S.M.
PDB entry 8ume: Influenza A virus Hemagglutinin H5/Vietnam/1204/2004 in complex with D04 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-17
Authors: Ferreira Ramos, A.S., Bajic, G.
PDB entry 8umf: Structure of PsCas9 in complex with gRNA and DNA in product state
Classification: IMMUNE SYSTEM
Source organism: Parasutterella secunda; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-10-17
Authors: Bravo, J.P.K., Taylor, D.W.
PDB entry 8umg: Chromodomains of human CHD1 complexed with UNC10142
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-10-17
Authors: Graboski, A.L., Redinbo, M.R.
PDB entry 8umh: Consensus map of PICdeltaTFIIK form2
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-10-17
Authors: Yang, C., Murakami, K.
PDB entry 8umi: consensus map of PICdeltaTFIIK form1
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-17
Authors: Yang, C., Murakami, K.
PDB entry 8umj: Wild type EPSP synthase complexed with glyphosate and shikimate-3-phosphate
Classification: TRANSFERASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-10-17
Authors: Kim, W., Zhang, Y.J.
PDB entry 8umk: EPSPS TIPS variant complexed with glyphosate and shikimate-3-phosphate
Classification: TRANSFERASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-18
Authors: Kim, W., Zhang, Y.J.
PDB entry 8uml: EPSPS TIPS P126S variant complexed with glyphosate and shikimate-3-phosphate
Classification: TRANSFERASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-10-18
Authors: Kim, W., Zhang, Y.J.
PDB entry 8umm: EPSPS TIPS K296R variant complexed with glyphosate and shikimate-3-phosphate
Classification: TRANSFERASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-10-18
Authors: Kim, W., Zhang, Y.J.
PDB entry 8umn: EPSPS TIPS P126S K296R variant complexed with glyphosate and shikimate-3-phosphate
Classification: TRANSFERASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-18
Authors: Kim, W., Zhang, Y.J.
PDB entry 8umo: Murine CD94-NKG2A receptor in complex with Qa-1b presenting AMAPRTLLL
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-10-18
Authors: MacLachlan, B.J., Rossjohn, J., Vivian, J.P.
PDB entry 8ump: T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-10-18
Authors: Castells-Graells, R., Meador, K., Sawaya, M.R., Yeates, T.O.
PDB entry 8umq: LSD1-CoREST in complex with T18, long soaking
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.26 Å
Deposited: 2023-10-18
Authors: Caroli, J., Mattevi, A.
PDB entry 8umr: T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.42 Å
Deposited: 2023-10-18
Authors: Castells-Graells, R., Meador, K., Sawaya, M.R., Yeates, T.O.
PDB entry 8ums: Site-specific Aspartic Acid Dehydration and Isomerization in Streptococcal Protein GB1: L-isoAsp40 Variant
Classification: IMMUNE SYSTEM
Experimental method: SOLUTION NMR
Deposited: 2023-10-18
Authors: Heath, S.L., Guseman, A.J., Gronenborn, A.M., Horne, W.S.
PDB entry 8umt: Atomic model of the human CTF18-RFC-PCNA binary complex in the three-subunit binding state (state 2)
Classification: REPLICATION/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-10-18
Authors: Wang, F., He, Q., Li, H.
PDB entry 8umu: Atomic model of the human CTF18-RFC-PCNA binary complex in the four-subunit binding state (state 3)
Classification: REPLICATION/DNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-10-18
Authors: Wang, F., He, Q., Li, H.
PDB entry 8umv: Atomic model of the human CTF18-RFC-PCNA-DNA ternary complex with narrow PCNA opening state I (state 5)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-10-18
Authors: Wang, F., He, Q., Li, H.
PDB entry 8umw: Atomic model of the human CTF18-RFC-PCNA-DNA ternary complex in the five-subunit binding state (state 4)
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-10-18
Authors: Wang, F., He, Q., Li, H.
PDB entry 8umx: Cryo-EM structure of a single subunit of a Clockwise-locked form of the Salmonella enterica Typhimurium flagellar C-ring.
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-10-18
Authors: Johnson, S., Deme, J.C., Lea, S.M.
PDB entry 8umy: Atomic model of the human CTF18-RFC-PCNA-DNA ternary complex with narrow PCNA opening state II (state 6)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-10-18
Authors: Wang, F., He, Q., Li, H.
PDB entry 8umz: Crystal Structure of Engineered Mouse Protocadherin-15 EC4-EC7 Connection
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-10-18
Authors: De-la-Torre, P., Martinez-Perez, K., Indzhykulian, A.
PDB entry 8un0: Atomic model of the human CTF18-RFC-PCNA-DNA ternary complex with cracked and closed PCNA (state 7)
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-10-18
Authors: Wang, F., He, Q., Li, H.
PDB entry 8un1: T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-10-18
Authors: Castells-Graells, R., Meador, K., Sawaya, M.R., Yeates, T.O.
PDB entry 8un2: Microbacterium testaceum C-glucosyl deglycosidase (CGD), wild type (cryo-EM)
Classification: LYASE
Source organism: Microbacterium testaceum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-10-18
Authors: Furlanetto, V., Kalyani, D.C., Hallberg, B.M., Divne, C.
PDB entry 8un3: KRAS-G13D-GDP in complex with Cpd5 (1-((S)-10-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-11-chloro-7-(((2S,4R)-4-fluoro-1-methylpyrrolidin-2-yl)methoxy)-3,4,13,13a-tetrahydropyrazino[2',1':3,4][1,4]oxazepino[5,6,7-de]quinazolin-2(1H)-yl)prop-2-en-1-one)
Classification: HYDROLASE,ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-10-18
Authors: Ultsch, M.H.
PDB entry 8un4: KRAS-G13D-GDP in complex with Cpd36 ((E)-1-((3S)-4-(7-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((S)-2-methylenetetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3-methylpiperazin-1-yl)-3-(4-((dimethylamino)methyl)-5-methylpyridin-2-yl)prop-2-en-1-one)
Classification: HYDROLASE,ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-10-18
Authors: Ultsch, M.H.
PDB entry 8un5: KRAS-G13D-GDP in complex with Cpd38 ((E)-1-((3S)-4-(7-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((S)-2-methylenetetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3-methylpiperazin-1-yl)-3-(1,2,3,4-tetrahydroisoquinolin-8-yl)prop-2-en-1-one)
Classification: HYDROLASE,ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-10-18
Authors: Ultsch, M.H.
PDB entry 8un7: Single particle analysis of recombinant human MFAP4
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2023-10-18
Authors: Wozny, M.W., Nelea, V.
PDB entry 8un8: Solution conformations of a 12-mer peptide bearing a natural N-hydrophobic triangle
Classification: PROTEIN BINDING
Experimental method: SOLUTION NMR
Deposited: 2023-10-18
Authors: Mi, T.X., Burgess, K.
PDB entry 8un9: Crystal structure of the MrfB exonuclease catalytic core
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.103 Å
Deposited: 2023-10-18
Authors: Manthei, K.A., Nandakumar, J., Simmons, L.A.
PDB entry 8und: X-ray Structure of SARS-CoV-2 main protease covalently bound to inhibitor GRL-190-21 at 1.90 A.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-18
Authors: Mesecar, A.D., Lendy, E.K., Ghosh, A.K., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8unf: Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp and DNA
Classification: REPLICATION
Source organism: Tequatrovirus T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-10-18
Authors: Huang, Y., Marcus, K., Subramanian, S., Gee, L.C., Gorday, K., Ghaffari-Kashani, S., Luo, X., Zhang, L., O'Donnell, M., Subramanian, S., Kuriyan, J.
PDB entry 8ung: Solution structure of toxin, U-RDTX-Pp19, from assassin bug Pristhesancus plagipennis
Classification: TOXIN
Source organism: Pristhesancus plagipennis
Experimental method: SOLUTION NMR
Deposited: 2023-10-18
Authors: Chin, Y.K.Y., Walker, A.A., King, G.F.
PDB entry 8unh: Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp
Classification: REPLICATION
Source organism: Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-10-19
Authors: Huang, Y., Marcus, K., Subramanian, S., Gee, L.C., Gorday, K., Ghaffari-Kashani, S., Luo, X., Zhang, L., O'Donnell, M., Subramanian, S., Kuriyan, J.
PDB entry 8uni: LSD1-CoREST with N-formyl-FAD in complex with H3K4M histone tail
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-10-19
Authors: Caroli, J., Mattevi, A.
PDB entry 8unj: Atomic model of the human CTF18-RFC alone in the apo state (State 1)
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-10-19
Authors: Wang, F., He, Q., Li, H.
PDB entry 8unk: Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1)
Classification: RNA BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii; Pyrococcus furiosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-10-19
Authors: Ona Chuquimarca, S.M., Beenstock, J., Daou, S., Keszei, A.F.A., Yin, Z., Sicheri, F.
PDB entry 8unl: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class A)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unm: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class B)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unn: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class C)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8uno: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class D)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.
PDB entry 8unp: CryoEM structure of beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (Class E)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-10-19
Authors: Papasergi-Scott, M.M., Skiniotis, G.