LiteFold/PDB huggingface dataset:
PDB entry 8ogu: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry C07
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-03-20
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ogv: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry C08
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-03-20
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ogw: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry D02
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2023-03-20
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ogx: Beta-glucuronidase from Acidobacterium capsulatum in complex with inhibitor R3794
Classification: HYDROLASE
Source organism: Acidobacterium capsulatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-03-20
Authors: Moran, E.M., Davies, G.J., Chen, C., Nieuwendijk, E.V., Wu, L., Skoulikopoulou, F., Riet, V.V., Overkleeft, H.S., Armstrong, Z.
PDB entry 8ogy: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry D04
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-03-20
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ogz: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry D06
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2023-03-20
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8oh0: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry D08
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-03-20
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8oh1: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry E04
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2023-03-20
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8oh2: Structure of the Tau-PAM4 Type 1 amyloid fibril
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-03-20
Authors: Wilkinson, M., Louros, N., Tsaka, G., Ramakers, M., Morelli, C., Garcia, T., Gallardo, R.U., D'Haeyer, S., Goossens, V., Audenaert, D., Thal, D.R., Ranson, N.A., Radford, S.E., Rousseau, F., Schymkowitz, J.
PDB entry 8oh4: Subtomogram averaging structure of cofilactin filament inside microtubule lumen of Drosophila S2 cell protrusion.
Classification: CONTRACTILE PROTEIN
Source organism: Drosophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 16.5 Å
Deposited: 2023-03-20
Authors: Ventura Santos, C., Carter, A.P.
PDB entry 8oh5: Cryo-EM structure of the electron bifurcating transhydrogenase StnABC complex from Sporomusa Ovata (state 2)
Classification: ELECTRON TRANSPORT
Source organism: Sporomusa ovata DSM 2662
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-03-20
Authors: Kumar, A., Kremp, F., Mueller, V., Schuller, J.M.
PDB entry 8oh6: Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
Classification: RIBOSOME
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2023-03-20
Authors: Kolosova, O., Zgadzay, Y., Yusupov, M.
PDB entry 8oh7: Structure of A4M4C bound to (KR)4 Solution backbone structure refined by PCS
Classification: PROTEIN BINDING
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2023-03-20
Authors: Cucuzza, S., Zerbe, O.
PDB entry 8oh8: Crystal structure of the cysteine-rich Gallus gallus urate oxidase in complex with the 8-azaxanthine inhibitor under reducing conditions (space group P 21 21 21)
Classification: OXIDOREDUCTASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-03-20
Authors: Di Palma, M., Chegkazi, M., Bui, S., Mori, G., Percudani, R., Steiner, R.A.
PDB entry 8oh9: Cryo-EM structure of the electron bifurcating transhydrogenase StnABC complex from Sporomusa Ovata (state 1)
Classification: ELECTRON TRANSPORT
Source organism: Sporomusa ovata DSM 2662
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-03-20
Authors: Kumar, A., Kremp, F., Mueller, V., Schuller, J.M.
PDB entry 8oha: Crystal structure of Leptospira interrogans GAPDH
Classification: HYDROLASE
Source organism: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2023-03-20
Authors: Navas-Yuste, S., de la Paz, K., Querol-Garcia, J., Gomez-Quevedo, S., Rodriguez de Cordoba, S., Fernandez, F.J., Vega, M.C.
PDB entry 8ohb: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry E08
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohc: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry E12
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohd: 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-03-21
Authors: Penchev, I., DaRosa, P.A., Becker, T., Beckmann, R., Kopito, R.
PDB entry 8ohe: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry F03
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohf: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry F04
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohg: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry F09
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohh: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry G05
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohi: Structure of the Fmoc-Tau-PAM4 Type 2 amyloid fibril
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-03-21
Authors: Wilkinson, M., Louros, N., Tsaka, G., Ramakers, M., Morelli, C., Garcia, T., Gallardo, R.U., D'Haeyer, S., Goossens, V., Audenaert, D., Thal, D.R., Ranson, N.A., Radford, S.E., Rousseau, F., Schymkowitz, J.
PDB entry 8ohj: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry G08
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohk: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry H01
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohl: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry H09
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohm: CRYSTAL STRUCTURE OF RNA HELICASE FROM GENOTYPE 1B HEPATITIS C VIRUS: MECHANISM OF UNWINDING DUPLEX RNA
Classification: HELICASE
Source organism: Hepatitis C virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1998-03-13
Authors: Cho, H.S., Ha, N.C., Kang, L.W., Oh, B.H.
PDB entry 8ohn: Human Coronavirus HKU1 spike glycoprotein
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-03-21
Authors: Pronker, M.F., Hurdiss, D.L.
PDB entry 8oho: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry H11
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-03-21
Authors: Garbers, T.B., Neumann, P., Wollenhaupt, J., Weiss, M.S., Ficner, R.
PDB entry 8ohp: Structure of the Fmoc-Tau-PAM4 Type 3 amyloid fibril
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-03-21
Authors: Wilkinson, M., Louros, N., Tsaka, G., Ramakers, M., Morelli, C., Garcia, T., Gallardo, R.U., D'Haeyer, S., Goossens, V., Audenaert, D., Thal, D.R., Ranson, N.A., Radford, S.E., Rousseau, F., Schymkowitz, J.
PDB entry 8ohq: Crystal structure of human heparanase in complex with competitive inhibitor derrived from siastatin B
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-03-21
Authors: Wu, L., Davies, G.J., Overkleeft, H.S., Armstrong, Z., Yurong, C.
PDB entry 8ohr: Crystal structure of human heparanase in complex with glucuronic acid configured 3-geminal diol iminosugar inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-03-21
Authors: Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.
PDB entry 8ohs: Core-binding domain of fungal E3-binding domain bound to the native pyruvate dehydrogenase E2 core
Classification: TRANSFERASE
Source organism: Neurospora crassa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-03-21
Authors: Forsberg, B.O.
PDB entry 8oht: Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with competitive inhibitor derrived from siastatin B
Classification: HYDROLASE
Source organism: Acidobacterium capsulatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2023-03-21
Authors: Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.
PDB entry 8ohu: Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with glucuronic acid configured isofagamine
Classification: HYDROLASE
Source organism: Acidobacterium capsulatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-03-21
Authors: Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.
PDB entry 8ohv: Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with glucuronic acid configured 3-geminal diol iminosugar inhibitor
Classification: HYDROLASE
Source organism: Acidobacterium capsulatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-03-21
Authors: Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.
PDB entry 8ohw: Crystal structure of heparanase from Burkholderia pseudomallei in complex with siastatin B derived inhibitor
Classification: HYDROLASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-03-21
Authors: Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.
PDB entry 8ohx: Crystal structure of Beta-glucuronidase from Escherichia coli in complex with siastatin B derived inhibitor
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-03-21
Authors: Armstrong, Z., Yurong, C., Wu, L., Overkleeft, H.S., Davies, G.J.
PDB entry 8ohy: Native Structure of Dictyostelium discoideum dye-decolorizing peroxidase
Classification: HYDROLASE
Source organism: Dictyostelium discoideum AX4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-03-21
Authors: Koua, F.H.
PDB entry 8ohz: Yeast 20S proteasome in complex with a photoswitchable cepafungin derivative (transCep1)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-03-21
Authors: Morstein, J., Amatuni, A., Schuster, A., Kuttenlochner, W., Ko, T., Groll, M., Adibekian, A., Renata, H., Trauner, D.H.
PDB entry 8oi0: Structure of the Fmoc-Tau-PAM4 Type 4 amyloid fibril
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-03-21
Authors: Wilkinson, M., Louros, N., Tsaka, G., Ramakers, M., Morelli, C., Garcia, T., Gallardo, R.U., D'Haeyer, S., Goossens, V., Audenaert, D., Thal, D.R., Ranson, N.A., Radford, S.E., Rousseau, F., Schymkowitz, J.
PDB entry 8oi1: Yeast 20S proteasome in complex with a photoswitchable cepafungin derivative (transCep4)
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-03-21
Authors: Morstein, J., Amatuni, A., Schuster, A., Kuttenlochner, W., Ko, T., Groll, M., Adibekian, A., Renata, H., Trauner, D.H.
PDB entry 8oi2: Crystal structure of Alb1 megabody in complex with human serum albumin
Classification: IMMUNE SYSTEM
Source organism: Helicobacter pylori G27; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-03-22
Authors: De Felice, S., Zoia, G., Romanyuk, Z., Pardon, E., Steyaert, J., Angelini, A., Cendron, L.
PDB entry 8oi3: Structure of NopD with AtSUMO2
Classification: HYDROLASE
Source organism: Arabidopsis thaliana; Bradyrhizobium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-03-22
Authors: Reverter, D., Li, Y.
PDB entry 8oi4: Metagenomic Beta-galactosidase from Glycoside Hydrolase family GH154
Classification: HYDROLASE
Source organism: organismal metagenomes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-03-22
Authors: Pijning, T., Hameleers, L., Jurak, E., Guskov, A.
PDB entry 8oi5: Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
Classification: RIBOSOME
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-03-22
Authors: Kolosova, O., Zgadzay, Y., Yusupov, M.
PDB entry 8oi6: Cryo-EM structure of the undecorated barbed end of filamentous beta/gamma actin
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2023-03-22
Authors: Oosterheert, W., Blanc, F.E.C., Roy, A., Belyy, A., Hofnagel, O., Hummer, G., Bieling, P., Raunser, S.
PDB entry 8oi7: Trichomonas vaginalis riboside hydrolase
Classification: HYDROLASE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-03-22
Authors: Patrone, M., Stockman, B.J., Degano, M.
PDB entry 8oi8: Cryo-EM structure of ADP-bound, filamentous beta-actin harboring the R183W mutation
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2023-03-22
Authors: Oosterheert, W., Blanc, F.E.C., Roy, A., Belyy, A., Hofnagel, O., Hummer, G., Bieling, P., Raunser, S.
PDB entry 8oi9: Trichomonas vaginalis riboside hydrolase in complex with 5-methyluridine
Classification: HYDROLASE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-03-22
Authors: Patrone, M., Stockman, B.J., Degano, M.
PDB entry 8oia: Trichomonas vaginalis riboside hydrolase in complex with D-ribose
Classification: HYDROLASE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-03-22
Authors: Patrone, M., Stockman, B.J., Degano, M.
PDB entry 8oib: Trichomonas vaginalis riboside hydrolase in complex with glycerol
Classification: HYDROLASE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-03-22
Authors: Patrone, M., Stockman, B.J., Degano, M.
PDB entry 8oic: Trichomonas vaginalis riboside hydrolase (His-tagged)
Classification: HYDROLASE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-03-22
Authors: Patrone, M., Stockman, B.J., Degano, M.
PDB entry 8oid: Cryo-EM structure of ADP-bound, filamentous beta-actin harboring the N111S mutation
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-03-22
Authors: Oosterheert, W., Blanc, F.E.C., Roy, A., Belyy, A., Hofnagel, O., Hummer, G., Bieling, P., Raunser, S.
PDB entry 8oie: Iron Nitrogenase Complex from Rhodobacter capsulatus
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter capsulatus SB 1003
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2023-03-22
Authors: Schmidt, F.V., Schulz, L., Zarzycki, J., Prinz, S., Erb, T.J., Rebelein, J.G.
PDB entry 8oif: Structure of the UBE1L activating enzyme bound to ISG15 and UBE2L6
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-03-22
Authors: Wallace, I., Kheewoong, B., Prabu, J.R., Vollrath, R., von Gronau, S., Schulman, B.A., Swatek, K.N.
PDB entry 8oig: Crystal Structure of Staphopain C from Staphylococcus aureus
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-03-22
Authors: McEwen, A.G., Magoch, M., Napolitano, V., Dubin, G., Wladyka, B.
PDB entry 8oih: Crystal structure of the cysteine-rich Gallus gallus urate oxidase in complex with the 8-azaxanthine inhibitor under oxidising conditions (space group C 2 2 21)
Classification: OXIDOREDUCTASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-03-22
Authors: Di Palma, M., Chegkazi, M., Bui, S., Mori, G., Percudani, R., Steiner, R.A.
PDB entry 8oii: Cryo-EM KSB domain of RhiE from Burkholderia rhizoxinica
Classification: TRANSFERASE
Source organism: Mycetohabitans rhizoxinica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-03-22
Authors: Capper, M.J., Koehnke, J.
PDB entry 8oij: Drosophila Smaug-Smoothened complex
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-03-23
Authors: Ubartaite, G., Kubikova, J., Jeske, M.
PDB entry 8oik: D-PHAT domain (NTD) of human SAMD4A
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-03-23
Authors: Kubikova, J., Jeske, M.
PDB entry 8oil: Plasmodium falciparum circumsporozoite protein C-terminal domain
Classification: CELL ADHESION
Source organism: Plasmodium falciparum
Experimental method: SOLUTION NMR, SOLUTION SCATTERING
Deposited: 2023-03-23
Authors: Sterckx, Y.G.-J., Volkov, A.N., Geens, R.
PDB entry 8oim: Crystal structure of the lipase SpL from Sphingomonas sp. HXN-200
Classification: HYDROLASE
Source organism: Sphingomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.994 Å
Deposited: 2023-03-23
Authors: Mokos, D., Gruber, K., Daniel, B.
PDB entry 8oin: 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
Classification: RIBOSOME
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-03-23
Authors: Saurer, M., Leibundgut, M., Scaiola, A., Schoenhut, T., Ban, N.
PDB entry 8oio: Crystal structure of the kelch domain of human KLHL12 in complex with PLEKHA4 peptide
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.954 Å
Deposited: 2023-03-23
Authors: Dalietou, E.V., Chen, Z., Ramdass, A.E., Manning, C., Richardson, W., Aitmakhanova, K., Platt, M., Pike, A.C.W., Fedorov, O., Brennan, P., Bullock, A.N.
PDB entry 8oip: 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Classification: RIBOSOME
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-03-23
Authors: Saurer, M., Leibundgut, M., Scaiola, A., Schoenhut, T., Ban, N.
PDB entry 8oiq: 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Classification: RIBOSOME
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-03-23
Authors: Saurer, M., Leibundgut, M., Scaiola, A., Schoenhut, T., Ban, N.
PDB entry 8oir: 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-03-23
Authors: Saurer, M., Leibundgut, M., Scaiola, A., Schoenhut, T., Ban, N.
PDB entry 8ois: 28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-03-23
Authors: Saurer, M., Leibundgut, M., Scaiola, A., Schoenhut, T., Ban, N.
PDB entry 8oit: 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-03-23
Authors: Saurer, M., Leibundgut, M., Scaiola, A., Schoenhut, T., Ban, N.
PDB entry 8oiu: Cryo-EM reconstruction of the native 24-mer E2o core of the 2-oxoglutarate dehydrogenase complex of C. thermophilum at 3.35 A resolution
Classification: TRANSFERASE
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-03-23
Authors: Skalidis, I., Tueting, C., Kyrilis, F.L., Hamdi, F., Kastritis, P.L.
PDB entry 8oiv: Monkeypox virus VP39 in complex with SAH and cap0
Classification: TRANSFERASE
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-03-23
Authors: Skvara, P., Chalupska, D., Silhan, J., Klima, M., Boura, E.
PDB entry 8oiw: Crystal structure of the cysteine-rich Gallus gallus urate oxidase in complex with the 8-azaxanthine inhibitor under oxidising conditions (space group P 21 21 21)
Classification: OXIDOREDUCTASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-03-23
Authors: Di Palma, M., Chegkazi, M., Bui, S., Mori, G., Percudani, R., Steiner, R.A.
PDB entry 8oix: CryoEM structure of 20S Trichomonas vaginalis proteasome in complex with proteasome inhibitor Salinosporamid A
Classification: HYDROLASE
Source organism: Trichomonas vaginalis G3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-03-23
Authors: Silhan, J., Fajtova, P., Boura, E.
PDB entry 8oiy: Crystal structure of the R15908H missense variant of titin domain Fn3-3
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-03-23
Authors: Rees, M., Gautel, M.
PDB entry 8oiz: Crystal structure of human CRBN-DDB1 in complex with Pomalidomide
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-03-23
Authors: Le Bihan, Y.-V., Cabry, M.P., van Montfort, R.L.M.
PDB entry 8oj0: 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
Classification: RIBOSOME
Source organism: Homo sapiens; Homo sapiens environmental sample
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-03-23
Authors: Penchev, I., DaRosa, P.A., Becker, T., Beckmann, R., Kopito, R.
PDB entry 8oj1: Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with High Affinity DNA
Classification: TRANSCRIPTION
Source organism: Marchantia polymorpha; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2023-03-23
Authors: Crespo, I., Weijers, D., Boer, D.R.
PDB entry 8oj2: Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with protomor-like sequence IR7
Classification: TRANSCRIPTION
Source organism: Marchantia polymorpha; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2023-03-23
Authors: Crespo, I., Weijers, D., Boer, D.R.
PDB entry 8oj3: Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418 (rotated state)
Classification: RIBOSOME
Source organism: Candida; Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-03-23
Authors: Kolosova, O., Zgadzay, Y., Yusupov, M.
PDB entry 8oj4: Structure of the MlaCD complex (1:6 stoichiometry)
Classification: LIPID BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.35 Å
Deposited: 2023-03-23
Authors: Wotherspoon, P., Bui, S., Sridhar, P., Bergeron, J.R.C., Knowles, T.J.
PDB entry 8oj5: 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-03-23
Authors: Penchev, I., DaRosa, P.A., Peter, J.J., Kulathu, Y., Becker, T., Beckmann, R., Kopito, R.
PDB entry 8oj6: HSV-1 DNA polymerase-processivity factor complex in pre-translocation state
Classification: TRANSFERASE
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2023-03-24
Authors: Gustavsson, E., Grunewald, K., Elias, P., Hallberg, B.M.
PDB entry 8oj7: HSV-1 DNA polymerase-processivity factor complex in halted elongation state
Classification: TRANSFERASE
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2023-03-24
Authors: Gustavsson, E., Grunewald, K., Elias, P., Hallberg, B.M.
PDB entry 8oj8: 60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-03-24
Authors: Penchev, I., DaRosa, P.A., Becker, T., Beckmann, R., Kopito, R.
PDB entry 8oj9: Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 free form
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24638 Å
Deposited: 2023-03-24
Authors: Haesaerts, S., Loris, R., Larsen, P.B.
PDB entry 8oja: HSV-1 DNA polymerase-processivity factor complex in exonuclease state
Classification: TRANSFERASE
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.87 Å
Deposited: 2023-03-24
Authors: Gustavsson, E., Grunewald, K., Elias, P., Hallberg, B.M.
PDB entry 8ojb: HSV-1 DNA polymerase-processivity factor complex in exonuclease state active site
Classification: TRANSFERASE
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2023-03-24
Authors: Gustavsson, E., Grunewald, K., Elias, P., Hallberg, B.M.
PDB entry 8ojc: HSV-1 DNA polymerase active site in alternative exonuclease state
Classification: TRANSFERASE
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2023-03-24
Authors: Gustavsson, E., Grunewald, K., Elias, P., Hallberg, B.M.
PDB entry 8ojd: HSV-1 DNA polymerase beta-hairpin loop
Classification: TRANSFERASE
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2023-03-24
Authors: Gustavsson, E., Grunewald, K., Elias, P., Hallberg, B.M.
PDB entry 8oje: Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 in complex with L-malate
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1424 Å
Deposited: 2023-03-24
Authors: Haesaerts, S., Loris, R., Larsen, P.B.
PDB entry 8ojf: Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 with bound phosphate
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.03684 Å
Deposited: 2023-03-24
Authors: Haesaerts, S., Loris, R., Larsen, P.B.
PDB entry 8ojg: Structure of the MlaCD complex (2:6 stoichiometry)
Classification: LIPID TRANSPORT
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.38 Å
Deposited: 2023-03-24
Authors: Wotherspoon, P., Bui, S., Sridhar, P., Bergeron, J.R.C., Knowles, T.J.
PDB entry 8ojh: Crystal structure of human CRBN-DDB1 in complex with compound 4
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-03-24
Authors: Cabry, M.P., Le Bihan, Y.-V., van Montfort, R.L.M.
PDB entry 8oji: Galectin-3 in complex with Methyl 2,6-anhydro-3-deoxy-3-S-(b-D-galactopyranosyl)-3-thio-D-glycero-L-altro-heptonate
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-03-24
Authors: Tsagkarakou, A.S., Leonidas, D.D.
PDB entry 8ojj: Cryo-EM structure of the DnaD-NTD tetramer
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.47 Å
Deposited: 2023-03-24
Authors: Winterhalter, C., Pelliciari, S., Cronin, N., Costa, T.R.D., Murray, H., Ilangovan, A.
PDB entry 8ojk: Galectin-3 in complex with 2,6-anhydro-3-deoxy-3-S-(beta-D-galactopyranosyl)-3-thio-D-glycero-L-altro-heptonamide
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-03-24
Authors: Tsagkarakou, A.S., Leonidas, D.D.
PDB entry 8ojl: Human Mitochondrial Lon Y394E Mutant ADP Bound
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-03-24
Authors: Kereiche, S., Bauer, J.A., Matyas, P., Novacek, J., Kutejova, E.
PDB entry 8ojm: Galectin-3 in complex with 2,6-anhydro-3-deoxy-3-S-(beta-D-galactopyranosyl)-3-thio-D-glycero-D-galacto-heptonamide
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-03-24
Authors: Tsagkarakou, A.S., Leonidas, D.D.
PDB entry 8ojn: Structure of the C-terminal beta helix domain of the Bdellovibrio bacteriovorus Bd3182 fibre
Classification: CELL ADHESION
Source organism: Bdellovibrio bacteriovorus HD100
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-03-24
Authors: Caulton, S.G., Lovering, A.L.
PDB entry 8ojo: Galectin-3 in complex with 2,6-Anhydro-5-S-(beta-D-galactopyranosyl)-5-thio-D-altritol
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-03-24
Authors: Tsagkarakou, A.S., Leonidas, D.D.
PDB entry 8ojp: Human galectin 1 in complex with inhibitor
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-03-24
Authors: Hakansson, M., Diehl, C., Nilsson, U.J., Zetterberg, F.R., Peterson, K.
PDB entry 8ojq: Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 T778 mutant with bound phosphate
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04938 Å
Deposited: 2023-03-24
Authors: Haesaerts, S., Loris, R., Larsen, P.
PDB entry 8ojr: Solution NMR Structure of Alpha-Synuclein 1-25 Peptide in 50% TFE.
Classification: LIPID BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-03-24
Authors: Allen, S.G., Williams, C., Meade, R.M., Tang, T.M.S., Crump, M.P., Mason, J.M.
PDB entry 8ojs: Crystal structure of the human IgD Fab - structure Fab1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-03-24
Authors: Davies, A.M., Beavil, R.L., McDonnell, J.M.
PDB entry 8ojt: Crystal structure of the human IgD Fab - structure Fab2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-03-24
Authors: Davies, A.M., Beavil, R.L., McDonnell, J.M.
PDB entry 8oju: Crystal structure of the human IgD Fab - structure Fab3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-03-24
Authors: Davies, A.M., Beavil, R.L., McDonnell, J.M.
PDB entry 8ojv: Crystal structure of the human IgD Fab - structure Fab4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-03-24
Authors: Davies, A.M., Beavil, R.L., McDonnell, J.M.
PDB entry 8ojw: Streptavidin WT artificial metalloenzyme for carboamination
Classification: UNKNOWN FUNCTION
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.484 Å
Deposited: 2023-03-25
Authors: Igareta, N.V., Ward, T.R.
PDB entry 8ojx: Streptavidin S112YK121E artificial metalloenzyme for carboamination
Classification: UNKNOWN FUNCTION
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-03-25
Authors: Igareta, N.V., Ward, T.R.
PDB entry 8ojy: Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 T778 mutant with bound malate
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09894 Å
Deposited: 2023-03-25
Authors: Loris, R., Haesaerts, S., Larsen, P.B.
PDB entry 8ojz: Arabidopsis thaliana Phosphoenolpyruvate carboxylase 1 (PPC1) G678S mutant
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24781 Å
Deposited: 2023-03-25
Authors: Loris, R., Haesaerts, S., Larsen, P.B.
PDB entry 8ok0: Crystal structure of human NQO1 in complex with the inhibitor PMSF
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-03-26
Authors: Martin-Garcia, J.M., Grieco, A., Ruiz-Fresneda, M.A.
PDB entry 8ok1: WD repeat containing protein 5 (WDR5)- N225A mutant
Classification: GENE REGULATION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2023-03-26
Authors: Wolf, E., Boergel, A.
PDB entry 8ok2: Bipartite interaction of TOPBP1 with the GINS complex
Classification: REPLICATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-03-26
Authors: Day, M., Oliver, A.W., Pearl, L.H.
PDB entry 8ok3: Structure of the C-terminal domain of the Bdellovibrio bacteriovorus Bd2133 fibre
Classification: CELL ADHESION
Source organism: Bdellovibrio bacteriovorus HD100
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-03-27
Authors: Caulton, S.G., Lovering, A.L.
PDB entry 8ok4: Variant Surface Glycoprotein VSG11wt-Oil
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-03-27
Authors: Zeelen, J.P., Stebbins, C.E., Aresta-Branco, F., Foti, K.
PDB entry 8ok5: Variant Surface Glycoprotein VSG11 monomer with iodine
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-03-27
Authors: Zeelen, J.P., Stebbins, C.E., Aresta-Branco, F.
PDB entry 8ok6: Variant Surface Glycoprotein VSG11 two monomers
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-03-27
Authors: Gkeka, A., Vlachou, E.P., Zeelen, J.P., Stebbins, C.E.
PDB entry 8ok7: Variant Surface Glycoprotein VSG558 NTD
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-03-27
Authors: Zeelen, J.P., Stebbins, C.E., van Straaten, M., Zhong, J.
PDB entry 8ok8: Variant Surface Glycoprotein VSG615
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2023-03-27
Authors: Zeelen, J.P., Stebbins, C.E., Chandra, M.
PDB entry 8ok9: Heterodimeric complex of Archaeoglobus fulgidus Argonaute protein Af1318 (AfAgo) with DNA and AfAgo-N protein containing N-L1-L2 domains
Classification: RNA BINDING PROTEIN
Source organism: Archaeoglobus fulgidus DSM 4304; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-03-27
Authors: Manakova, E.N., Zaremba, M.
PDB entry 8oka: Human Mitochondrial Lon Y394F Mutant ADP Bound
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2023-03-28
Authors: Kereiche, S., Bauer, J.A., Matyas, P., Novacek, J., Kutejova, E.
PDB entry 8okb: SARS-CoV2 NSP5 in complex with a peptidomimetic ligand
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-03-28
Authors: Calderone, V.
PDB entry 8okc: SARS-CoV2 NSP5 in complex with a GC-376 based peptidomimetic PROTAC
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-03-28
Authors: Calderone, V.
PDB entry 8okd: Human pseudouridine synthase 3 and tRNA-Gln
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-03-28
Authors: Lin, T.-Y., Glatt, S.
PDB entry 8oke: Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor AKI_1
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2023-03-28
Authors: Brynda, J., Rezacova, P.M., Kudova, E.
PDB entry 8okf: WD repeat containing protein 5 (WDR5)- PER2 peptide
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-03-28
Authors: Wolf, E., Boergel, A.
PDB entry 8okg: Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor AKI_13
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-03-28
Authors: Brynda, J., Rezacova, P.M., Kudova, E.
PDB entry 8okh: Crystal structure of Bdellovibrio bacteriovorus Bd1399
Classification: UNKNOWN FUNCTION
Source organism: Bdellovibrio bacteriovorus HD100
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-03-28
Authors: Caulton, S.G., Lovering, A.L.
PDB entry 8oki: Cryo-EM structure of Pyrococcus furiosus transcription elongation complex bound to Spt4/5
Classification: TRANSCRIPTION
Source organism: Pyrococcus furiosus DSM 3638; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2023-03-28
Authors: Tarau, D.M., Reichelt, R., Heiss, F.B., Pilsl, M., Hausner, W., Engel, C., Grohmann, D.
PDB entry 8okj: Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor AKI_12
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-03-28
Authors: Brynda, J., Rezacova, P.M., Kudova, E.
PDB entry 8okk: Crystal structure of F2F-2020184-00X bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-03-28
Authors: Costanzi, E., Demitri, N., Storici, P.
PDB entry 8okl: Crystal structure of F2F-2020185-01X bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-03-28
Authors: Costanzi, E., Demitri, N., Storici, P.
PDB entry 8okm: Crystal structure of F2F-2020197-00X bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-03-28
Authors: Costanzi, E., Demitri, N., Storici, P.
PDB entry 8okn: Crystal structure of F2F-2020198-00X bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-03-28
Authors: Costanzi, E., Demitri, N., Storici, P.
PDB entry 8oko: Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor AKI_2
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-03-28
Authors: Brynda, J., Rezacova, P.M., Kudova, E.
PDB entry 8okp: Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor AKI_33
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-03-28
Authors: Brynda, J., Rezacova, P.M., Kudova, E.
PDB entry 8okq: Carbonic Anhydrase 2 in Complex with Steriod_Sulphamoyl AKI_2
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2023-03-29
Authors: Brynda, J., Rezacova, P.M., Kudova, E.
PDB entry 8okr: virus enhancing amyloid fibril formed by CKFKFQF
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-03-29
Authors: Heerde, T., Schmidt, M., Faendrich, M.
PDB entry 8oks: Crystal structure of Bdellovibrio bacteriovorus Bd2740 C-terminal domain
Classification: CELL ADHESION
Source organism: Bdellovibrio bacteriovorus HD100
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-03-29
Authors: Caulton, S.G., Lovering, A.L.
PDB entry 8okt: Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor VK42
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-03-29
Authors: Brynda, J., Rezacova, P.M., Kudova, E.
PDB entry 8oku: Salt-Inducible Kinase 3 in complex with an inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-03-29
Authors: Flower, T.G., Leonard, P.M., Lamers, M.B.A.C., Mollat, P.
PDB entry 8okv: lipoprotein BT2095 from Bacteroides thetaiotamicron bound to cyanocobalamin CnCbl
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-03-29
Authors: Javier Abellon-Ruiz, J., van den Berg, B., Jana, K., Kleinekathofer, U., Silale, A., Frey, A.M., Basle, A., Trost, M.
PDB entry 8okw: Crystal structure of Bdellovibrio bacteriovorus Bd2734 C-terminal domain
Classification: CELL ADHESION
Source organism: Bdellovibrio bacteriovorus HD100
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-03-29
Authors: caulton, S.G., Lovering, A.L.
PDB entry 8okx: Structure of cGAS in complex with SPSB3-ELOBC
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2023-03-29
Authors: Xu, P.B., Ablasser, A.
PDB entry 8oky: Crystal structure of D-ProB26-DTriA analogue of human insulin
Classification: HORMONE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2023-03-29
Authors: Brzozowski, A.M., Zakova, L., Jiracek, J.
PDB entry 8ol1: cGAS-Nucleosome in complex with SPSB3-ELOBC (composite structure)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-03-29
Authors: Xu, P.B., Ablasser, A.
PDB entry 8ol2: Murine type II Abeta fibril from APP23 mouse
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-03-30
Authors: Zielinski, M., Peralta Reyes, F.S., Gremer, L., Schemmert, S., Frieg, B., Willuweit, A., Donner, L., Elvers, M., Nilsson, L.N.G., Syvanen, S., Sehlin, D., Ingelsson, M., Willbold, D., Schroeder, G.F.
PDB entry 8ol3: Murine type III Abeta fibril from APP/PS1 mouse
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-03-30
Authors: Zielinski, M., Peralta Reyes, F.S., Gremer, L., Schemmert, S., Frieg, B., Willuweit, A., Donner, L., Elvers, M., Nilsson, L.N.G., Syvanen, S., Sehlin, D., Ingelsson, M., Willbold, D., Schroeder, G.F.
PDB entry 8ol4: Structure of the C-terminal domains of the Bdellovibrio bacteriovorus Bd2439 fibre in complex with GlcNAc
Classification: CELL ADHESION
Source organism: Bdellovibrio bacteriovorus HD100
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-03-30
Authors: Caulton, S.G., Lovering, A.L.
PDB entry 8ol5: Murine type II Abeta fibril from ARTE10 mouse
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-03-30
Authors: Zielinski, M., Peralta Reyes, F.S., Gremer, L., Schemmert, S., Frieg, B., Willuweit, A., Donner, L., Elvers, M., Nilsson, L.N.G., Syvanen, S., Sehlin, D., Ingelsson, M., Willbold, D., Schroeder, G.F.
PDB entry 8ol6: Murine type II Abeta fibril from tgAPPSwe mouse
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-03-30
Authors: Zielinski, M., Peralta Reyes, F.S., Gremer, L., Schemmert, S., Frieg, B., Willuweit, A., Donner, L., Elvers, M., Nilsson, L.N.G., Syvanen, S., Sehlin, D., Ingelsson, M., Willbold, D., Schroeder, G.F.
PDB entry 8ol7: MurineArc type I Abeta fibril from tg-APPArcSwe mouse
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-03-30
Authors: Zielinski, M., Peralta Reyes, F.S., Gremer, L., Schemmert, S., Frieg, B., Willuweit, A., Donner, L., Elvers, M., Nilsson, L.N.G., Syvanen, S., Sehlin, D., Ingelsson, M., Willbold, D., Schroeder, G.F.