LiteFold/PDB huggingface dataset:
PDB entry 8k5y: Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-07-24
Authors: Kamitani, M., Mima, M., Nishikawa-Shimono, R.
PDB entry 8k60: Cryo-EM structure of Streptomyces coelicolor transcription initiation complex with the global transcription factor AfsR
Classification: GENE REGULATION
Source organism: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-24
Authors: Lin, W., Shi, J.
PDB entry 8k62: Crystal structure of ALKBH1 and 13h complex.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.991 Å
Deposited: 2023-07-24
Authors: Liang, X., Yinping, G., Feng, L., Jiang, Z., Ke, X., Shengyong, Y.
PDB entry 8k65: Serial femtosecond crystallography structure of CO bound ba3- type cytochrome c oxidase without pump laser irradiation
Classification: ELECTRON TRANSPORT
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-25
Authors: Safari, C., Ghosh, S., Andersson, R., Johannesson, J., Donoso, A.V., Bath, P., Zoric, D., Sandelin, E., Nango, E., Tanaka, R., Iwata, S., Neutze, R., Branden, G.
PDB entry 8k66: Cryo-EM structure of Oryza sativa HKT2;1 at 2.5 angstrom
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa subsp. japonica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-07-25
Authors: Wang, X., Shen, X., Qu, Y., Wang, C., Shen, H.
PDB entry 8k67: Crystal structure of SARS-CoV-2 3CLpro M165V mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-25
Authors: Zhang, L.J., Hu, Q.
PDB entry 8k68: Crystal structure of SARS-CoV-2 3CLpro M49K mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-25
Authors: Zhang, L.J., Hu, Q.
PDB entry 8k69: Cryo-EM structure of Oryza sativa HKT2;2/1 at 2.3 angstrom
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa subsp. indica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2023-07-25
Authors: Wang, X., Shen, X., Qu, Y., Wang, C., Shen, H.
PDB entry 8k6a: Crystal structure of SARS-CoV-2 3CLpro S301P mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-25
Authors: Zhang, L.J., Hu, Q.
PDB entry 8k6b: Crystal structure of SARS-CoV-2 3CLpro M49K/M165V mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-25
Authors: Zhang, L.J., Hu, Q.
PDB entry 8k6c: Crystal structure of SARS-CoV-2 3CLpro M49K/S301P mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-07-25
Authors: Zhang, L.J., Hu, Q.
PDB entry 8k6d: Crystal structure of SARS-CoV-2 3CLpro M49K/S301P mutant in complex with WU-04
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-07-25
Authors: Zhang, L.J., Hu, Q.
PDB entry 8k6e: LnaB-Actin-PRUb ternary complex
Classification: TOXIN
Source organism: Homo sapiens; Legionella; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-07-25
Authors: Chen, T.T., Ouyang, S.Y.
PDB entry 8k6f: LnaB-Actin-PRUb ternary complex
Classification: TOXIN
Source organism: Homo sapiens; Legionella; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2023-07-25
Authors: Chen, T.T., Ouyang, S.Y.
PDB entry 8k6g: Crystal structure of E.coli Cyanase
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-25
Authors: Kim, J., Nam, K.H., Cho, Y.
PDB entry 8k6h: Crystal structure of e.coli cyanase complex with cyanate
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-25
Authors: Kim, J., Nam, K.H., Cho, Y.
PDB entry 8k6i: LnaB-Actin-PRUb ternary complex
Classification: TOXIN
Source organism: Homo sapiens; Legionella; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2023-07-25
Authors: Chen, T.T., Ouyang, S.Y.
PDB entry 8k6j: Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-H1147A
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter japonicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-07-25
Authors: Fukawa, E., Miyata, T., Makino, F., Adachi, T., Suzuki, Y., Tanaka, H., Namba, K., Sowa, K., Kitazumi, Y., Shirai, O.
PDB entry 8k6k: Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1146A
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter japonicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-07-25
Authors: Fukawa, E., Miyata, T., Makino, F., Adachi, T., Suzuki, Y., Tanaka, H., Namba, K., Sowa, K., Kitazumi, Y., Shirai, O.
PDB entry 8k6l: Cryo-EM structure of human OATP1B1 in complex with DCF
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-07-25
Authors: Shan, Z., Yang, X., Zhang, Y.
PDB entry 8k6m: Structural complex of neuropeptide Y receptor 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-25
Authors: Shen, S.Y., Zhao, C., Shao, Z.H.
PDB entry 8k6n: Structural complex of neuropeptide Y receptor 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-25
Authors: Shen, S.Y., Zhao, C., Shao, Z.H.
PDB entry 8k6o: Structural complex of neuropeptide Y receptor 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-25
Authors: Shen, S.Y., Zhao, C., Shao, Z.H.
PDB entry 8k6p: Crystal structure of SHARPIN LTM motif
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-07-25
Authors: Yan, Z., Pan, L.F.
PDB entry 8k6q: Crystal structure of HOIL-1L LTM domain
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-07-25
Authors: Yan, Z., Pan, L.F.
PDB entry 8k6r: LnaB-Actin-PRUb ternary complex in the presence of AMPPNP
Classification: TOXIN
Source organism: Homo sapiens; Legionella; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2023-07-25
Authors: Chen, T.T., Ouyang, S.Y.
PDB entry 8k6s: Crystal structure of E.coli Cyanase complex with bicarbonate
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-07-25
Authors: Kim, J., Nam, K.H., Cho, Y.
PDB entry 8k6t: The minor pilin structure of FctB3 in Streptococcus
Classification: PROTEIN FIBRIL
Source organism: Streptococcus pyogenes serotype M3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-07-25
Authors: Takebe, K., Sangawa, T., Suzuki, M., Nakata, M.
PDB entry 8k6u: Serial Femtosecond X-ray structure of E.coli Cyanase with un-modeled density at active site
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-25
Authors: Kim, J., Nam, K.H., Cho, Y.
PDB entry 8k6v: LnaB-Actin-PRUb ternary complex
Classification: TOXIN
Source organism: Homo sapiens; Legionella; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-25
Authors: Chen, T.T., Ouyang, S.Y.
PDB entry 8k6w: dUTPase of helicobacter pylori 26695
Classification: HYDROLASE
Source organism: Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-07-25
Authors: Kumari, K., Gourinath, S.
PDB entry 8k6x: Crystal structure of E.coli Cyanase complex with cyanate and bicarbonate
Classification: LYASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-25
Authors: Kim, J., Nam, K.H., Cho, Y.
PDB entry 8k6y: Serial femtosecond crystallography structure of photo dissociated CO from ba3- type cytochrome c oxidase determined by extrapolation method
Classification: ELECTRON TRANSPORT
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-25
Authors: Safari, C., Ghosh, S., Andersson, R., Johannesson, J., Donoso, A.V., Zoric, D., Sandelin, E., Iwata, S., Neutze, R., Branden, G.
PDB entry 8k6z: NMR structure of human leptin
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-07-26
Authors: Fan, X., Qin, R., Yuan, W., Fan, J., Huang, W., Lin, Z.
PDB entry 8k70: Structural basis for the distinct roles of non-conserved Pro116 and conserved Tyr124 of BCH domain of yeast p50RhoGAP
Classification: LIPID BINDING PROTEIN
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2023-07-26
Authors: Shankar, S., Sivaraman, J.
PDB entry 8k71: Factor-inhibiting hypoxia-inducible factor in complex with Zn(II) and 2-(3-hydroxy-2-((2-((naphthalen-2-ylmethyl)sulfonyl)acetyl)imino)-2,3-dihydrothiazol-4-yl)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-07-26
Authors: Nakashima, Y., Corner, T.P., Teo, R.Z.R., Brewitz, L., Schofield, C.J.
PDB entry 8k72: Factor-inhibiting hypoxia-inducible factor in complex with Zn(II) and 2-(3-hydroxy-2-((3-(phenylsulfonamido)propanoyl)imino)-2,3-dihydrothiazol-4-yl)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-07-26
Authors: Nakashima, Y., Corner, T.P., Teo, R.Z.R., Brewitz, L., Schofield, C.J.
PDB entry 8k73: Factor-inhibiting hypoxia-inducible factor in complex with Zn(II) and 2-(3-hydroxy-2-((1-(phenylsulfonyl)pyrrolidine-3-carbonyl)imino)-2,3-dihydrothiazol-4-yl)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-07-26
Authors: Nakashima, Y., Corner, T.P., Teo, R.Z.R., Brewitz, L., Schofield, C.J.
PDB entry 8k74: A novel monooxygenase
Classification: OXIDOREDUCTASE
Source organism: Klebsiella sp. PCX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-07-26
Authors: Ma, D., Feng, R.
PDB entry 8k75: N-terminal domain of FIPV nucleocapsid protein
Classification: VIRAL PROTEIN
Source organism: Feline coronavirus (strain FIPV WSU-79/1146)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2023-07-26
Authors: Zhang, J.T., Liang, R., Shi, Y.J., Peng, G.Q.
PDB entry 8k76: Crystal structure of S-adenosylmethionine-dependent methyltransferase from Fusobacterium nucleatum
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-07-26
Authors: He, S.R., Bai, X., Zhang, J., Zhao, Z.D.
PDB entry 8k77: Cryo-EM structure of SV2A in complex with BoNT/A2 Hc and brivaracetam
Classification: MEMBRANE PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-07-26
Authors: Yamagata, A.
PDB entry 8k78: Crystal structure of cMET kinase domain bound by TPX-0022
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2023-07-26
Authors: Qu, L.Z., Chen, Y.H.
PDB entry 8k79: Crystal structure of c-SRC kinase domain bound by TPX-0022
Classification: TRANSFERASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-07-26
Authors: Qu, L.Z., Chen, Y.H.
PDB entry 8k7a: Cryo-EM structure of nucleotide-bound ComA E647Q mutant with Mg2+
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus pneumoniae R6
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-07-26
Authors: Yu, L., Xin, X., Min, L.
PDB entry 8k7b: post-occluded structure of human ABCB6 W546A mutant (ADP/VO4-bound)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-07-26
Authors: Jin, M.S., Lee, S.S., Park, J.G., Jang, E., Choi, S.H., Kim, S., Kim, J.W.
PDB entry 8k7c: Outward-facing structure of human ABCB6 W546A mutant (ADP/VO4-bound)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-07-26
Authors: Jin, M.S., Lee, S.S., Park, J.G., Jang, E., Choi, S.H., Kim, S., Kim, J.W.
PDB entry 8k7d: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3R,4S,5R)-2-(aminomethyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7e: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3R,4S,5R)-2-(aminomethyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7f: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3S,4R,5R)-2,5-bis(hydroxymethyl)pyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7g: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3S,4R,5R)-2,5-bis(hydroxymethyl)pyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7h: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3S,4R)-2-(hydroxymethyl)-1-methylpyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7i: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3S,4R,5R)-2-(hydroxymethyl)-5-((methylamino)methyl)pyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7j: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3R,4S,5R)-2-((dimethylamino)methyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7k: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3S,4R,5R)-2,5-bis(hydroxymethyl)-1-methylpyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7l: Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3R,4S,5R)-2-(aminomethyl)-5-(hydroxymethyl)-1-methylpyrrolidine-3,4-diol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-26
Authors: Li, H.Y., Huang, K.F., Ko, T.P., Cheng, W.C.
PDB entry 8k7m: De novo design protein -T01
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-07-26
Authors: Wang, S., Liu, Y.
PDB entry 8k7n: Structure of ferric-binding protein KfuA
Classification: METAL BINDING PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-26
Authors: Zhao, Q., Bartlam, M.
PDB entry 8k7o: De novo design protein -T03
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-27
Authors: Wang, S., Liu, Y.
PDB entry 8k7p: Staphylococcus aureus lipase -PSA complex
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2023-07-27
Authors: Kitadokoro, J., Kamitani, S., Kitadokoro, K.
PDB entry 8k7q: Staphylococcus aureus lipase S116A inactive mutant-PSA complex
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-07-27
Authors: Kitadokoro, J., Kamitani, S., Kitadokoro, K.
PDB entry 8k7r: Human Fc epsilon RI in complex with hIgE Fc (TMD disordered)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2023-07-27
Authors: Zhang, Z., Yui, M., Ohto, U., Shimizu, T.
PDB entry 8k7s: Human Fc epsilon RI in complex with mIgE Fc (TMD disordered)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2023-07-27
Authors: Zhang, Z., Yui, M., Ohto, U., Shimizu, T.
PDB entry 8k7t: Mouse Fc epsilon RI in complex with mIgE Fc
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2023-07-27
Authors: Zhang, Z., Yui, M., Ohto, U., Shimizu, T.
PDB entry 8k7u: the alpha-galactosidase 5 with Cacl2
Classification: HYDROLASE
Source organism: Blautia pseudococcoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-07-27
Authors: Li, Y.W., Ru, Y.X.
PDB entry 8k7v: the alpha-galactosidase 5 with inhibitor ABP2
Classification: HYDROLASE
Source organism: Blautia pseudococcoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-07-27
Authors: Li, Y.W., Ru, Y.X.
PDB entry 8k7w: Crystal structure of Broccoli aptamer with DFHBI-1T
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2023-07-27
Authors: Peng, X., Huang, L.
PDB entry 8k7x: Crystal structure of GH146 beta-L-arabinofuranosidase Bll3HypBA1 (amino acids 380-1223) in complex with Tris
Classification: HYDROLASE
Source organism: Bifidobacterium longum subsp. longum JCM 1217
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-07-27
Authors: Pan, L., Maruyama, S., Miyake, M., Fujita, K., Fushinobu, S.
PDB entry 8k7y: Crystal structure of GH146 beta-L-arabinofuranosidase Bll3HypBA1 (amino acids 380-1051), ligand-free form
Classification: HYDROLASE
Source organism: Bifidobacterium longum subsp. longum JCM 1217
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-27
Authors: Maruyama, S., Pan, L., Miyake, M., Fujita, K., Fushinobu, S.
PDB entry 8k7z: De novo design protein -N1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-07-27
Authors: Wang, S., Liu, Y.
PDB entry 8k80: Crystal structure of Langya Virus attachment (G) glycoprotein
Classification: VIRAL PROTEIN
Source organism: Langya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.37 Å
Deposited: 2023-07-28
Authors: Li, Y.H., Huang, X.Y., Xu, J.J.
PDB entry 8k81: Solution NMR Structure of ZF3 (fragment 346-396) from human Insulinoma-associated protein 1(INSM1)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-07-28
Authors: He, X.L., Yang, Y.H.
PDB entry 8k82: Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-28
Authors: Buschauer, R., Beckmann, R., Cheng, J.
PDB entry 8k83: De novo design protein -N2
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-28
Authors: Wang, S., Liu, Y.
PDB entry 8k84: De novo design protein -N3
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-28
Authors: Wang, S., Liu, Y.
PDB entry 8k85: Crystal structure of Red Broccoli aptamer with OBI
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-07-28
Authors: Peng, X., Huang, L.
PDB entry 8k86: Crystal structure of NFIL3 in complex with TTATGTAA DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2023-07-28
Authors: Min, J.R., Chen, S.Z., Liu, K.
PDB entry 8k87: Dimer structure of procaryotic Ago
Classification: DNA/RNA/CELL INVASION
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-29
Authors: Gao, X., Sun, D., Cui, S., Wang, Y.
PDB entry 8k88: Structure of procaryotic Ago
Classification: DNA/RNA/CELL INVASION
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-07-29
Authors: Gao, X., Sun, D., Cui, S., Wang, Y.
PDB entry 8k89: Crystal structure of NFIL3
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-29
Authors: Min, J.R., Chen, S.Z., Liu, K.
PDB entry 8k8a: Crystal structure of NFIL3 in complex with TTACGTAA DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-07-29
Authors: Min, J.R., Chen, S.Z., Liu, K.
PDB entry 8k8b: Solution structure of a hairpin RNA with the UUCGA loop
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-07-29
Authors: Ichijo, R., Kawai, G.
PDB entry 8k8c: Crystal structure of C/EBPalpha BZIP domain bound to a high affinity DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2023-07-29
Authors: Min, J.R., Chen, S.Z., Liu, K.
PDB entry 8k8d: Crystal structure of C/EBPbeta BZIP domain bound to a high affinity DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-29
Authors: Min, J.R., Chen, S.Z., Liu, K.
PDB entry 8k8e: Human gamma-secretase in complex with a substrate mimetic
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-07-29
Authors: Shi, Y.G., Zhou, R., Wolfe, M.S.
PDB entry 8k8f: De novo design protein -N7
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-07-29
Authors: Wang, S., Liu, Y.
PDB entry 8k8g: De novo design protein -N9
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-07-29
Authors: Wang, S., Liu, Y.
PDB entry 8k8h: Crystal structure of the CysR-CTLD3 fragment of human DEC205
Classification: RECOMBINATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2023-07-29
Authors: Qian, Y., Kong, D., Yu, B., He, Y.
PDB entry 8k8i: De novo design protein -N14
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-30
Authors: Wang, S., Liu, Y.
PDB entry 8k8j: Cannabinoid Receptor 1 bound to Fenofibrate coupling MiniGsq and Nb35 Complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-07-30
Authors: Tang, W.Q., Wang, T.X., Li, F.H., Wang, J.Y.
PDB entry 8k8k: Structure of Klebsiella pneumonia ModA
Classification: METAL BINDING PROTEIN
Source organism: Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-07-31
Authors: Zhao, Q., Bartlam, M.
PDB entry 8k8l: Structure of Klebsiella pneumonia ModA with molybdate
Classification: METAL BINDING PROTEIN
Source organism: Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-07-31
Authors: Zhao, Q., Bartlam, M.
PDB entry 8k8m: Crystallographic structure of Lysozyme C from chicken
Classification: ANTIMICROBIAL PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-07-31
Authors: Zheng, P., Shang, G., Jin, J., He, L.
PDB entry 8k8s: F8-A22-E4 complex of MPXV in complex with DNA and Ara-CTP
Classification: VIRAL PROTEIN/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-07-31
Authors: Shen, Y.P., Li, Y.N., Yan, R.H.
PDB entry 8k8t: Structure of CUL3-RBX1-KLHL22 complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-31
Authors: Wang, W., Ling, L., Dai, Z., Zuo, P., Yin, Y.
PDB entry 8k8u: F8-A22-E4 complex of MPXV in complex with DNA and dCTP
Classification: VIRAL PROTEIN/DNA
Source organism: Monkeypox virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-07-31
Authors: Shen, Y.P., Li, Y.N., Yan, R.H.
PDB entry 8k8v: CryoEM structure of LonC protease hepatmer, apo state
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k8w: CryoEM structure of LonC protease open hexamer, apo state
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k8x: CryoEM of LonC open pentamer, apo state
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k8y: CryoEM structure of LonC heptamer in presence of AGS
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k8z: CryoEM structure of LonC protease hexamer in presence of AGS
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k90: CryoEM structure of LonC protease open pentamer in presence of AGS
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k91: CryoEM structure of LonC S582A hepatmer with Lysozyme
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k92: CryoEM structure of LonC S582A hexamer with Lysozyme
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k93: CryoEM structure of LonC protease S582A open hexamer with lysozyme
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k94: CryoEM structure of LonC protease S582A open pentamer with lysozyme
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k95: CryoEM structure of LonC protease open Hexamer, AGS
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k96: CryoEM structure of LonC protease hepatmer with Bortezomib
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k97: CryoEM structure of LonC protease hexamer with Bortezomib
Classification: CHAPERONE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-07-31
Authors: Li, M., Hsieh, K., Liu, H., Zhang, S., Gao, Y., Gong, Q., Zhang, K., Chang, C., Li, S.
PDB entry 8k98: Cryo-EM structure of DSR2-TTP
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus halotolerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-31
Authors: Zhang, H., Li, Z., Li, X.Z.
PDB entry 8k9a: Cryo-EM structure of DSR2-DSAD1 state 2
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-07-31
Authors: Zhang, H., Li, Z., Li, X.Z.
PDB entry 8k9b: SARS-CoV-2 spike protein in complex with one S2H5 Fab
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-07-31
Authors: Hong, Q., Cong, Y.
PDB entry 8k9c: Structure of human Caprin-2 HR1 domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-07-31
Authors: Song, X.M.
PDB entry 8k9d: Structure of human Caprin-2 HR1 domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-07-31
Authors: Song, X.M.
PDB entry 8k9e: Cryo-EM structure of the photosynthetic alternative complex III from Chloroflexus aurantiacus at 3.3 angstrom
Classification: MEMBRANE PROTEIN
Source organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-08-01
Authors: Xu, X.
PDB entry 8k9f: Cryo-EM structure of the photosynthetic alternative complex III from Chloroflexus aurantiacus at 2.9 angstrom
Classification: MEMBRANE PROTEIN
Source organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-01
Authors: Xu, X.
PDB entry 8k9g: Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-1)
Classification: DNA/RNA/CELL INVASION
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-08-01
Authors: Gao, X., Shang, K., Zhu, K., Wang, L., Mu, Z., Fu, X., Yu, X., Qin, B., Zhu, H., Ding, W., Cui, S.
PDB entry 8k9h: Complex structure of Acetoacetate:butyrate/acetate coenzyme A transferase and Butyrate-acetoacetate CoA-transferase subunit B from Fusobacterium nucleatum ATCC 25586
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-08-01
Authors: Bai, X., Zhao, Z.D., Xu, Y.B.
PDB entry 8k9i: Structure of CUL3-RBX1-KLHL22 complex without CUL3 NA motif
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-08-01
Authors: Wang, W., Ling, L., Dai, Z., Zuo, P., Yin, Y.
PDB entry 8k9j: SARS-CoV-2 spike protein in complex with two S2H5 Fabs on NTD-1 and NTD-2
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2023-08-01
Authors: Hong, Q., Cong, Y.
PDB entry 8k9k: Full agonist-bound mu-type opioid receptor-G protein complex
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Macaca mulatta; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-08-01
Authors: Hisano, T., Uchikubo-Kamo, T., Shirouzu, M., Imai, S., Kaneko, S., Shimada, I.
PDB entry 8k9l: Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Macaca mulatta; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-08-01
Authors: Hisano, T., Uchikubo-Kamo, T., Shirouzu, M., Imai, S., Kaneko, S., Shimada, I.
PDB entry 8k9m: SARS-CoV-2 spike protein in complex with two S2H5 Fabs on NTD-1 and NTD-3
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2023-08-01
Authors: Hong, Q., Cong, Y.
PDB entry 8k9n: Subatomic resolution structure of Pseudoazurin from Alcaligenes faecalis
Classification: ELECTRON TRANSPORT
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 0.86 Å
Deposited: 2023-08-01
Authors: Fukuda, Y., Lintuluoto, M., Kurihara, K., Hasegawa, K., Inoue, T., Tamada, T.
PDB entry 8k9o: Crystal structure of Cyanobacteriochrome RcaE GAF domain in Pg state
Classification: SIGNALING PROTEIN
Source organism: Microchaete diplosiphon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-08-01
Authors: Nagae, T., Hirose, Y., Mishima, M.
PDB entry 8k9p: Neutron X-ray joint structure of pseudoazurin from Alcaligenes faecalis
Classification: ELECTRON TRANSPORT
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2023-08-01
Authors: Fukuda, Y., Kurihara, K., Inoue, T., Tamada, T.
PDB entry 8k9q: Cryo-EM structure of the GPI inositol-deacylase (PGAP1/Bst1) from Chaetomium thermophilum
Classification: MEMBRANE PROTEIN
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719); synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-08-01
Authors: Hong, J., Li, T., Qu, Q., Li, D.
PDB entry 8k9r: Cryo EM structure of the products-bound PGAP1(Bst1)-H443N from Chaetomium thermophilum
Classification: MEMBRANE PROTEIN
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719); Homo sapiens; Psychromonas sp. B3M02; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-08-01
Authors: Li, T., Hong, J., Qu, Q., Li, D.
PDB entry 8k9s: Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 1 (ADKI1)
Classification: LIGASE
Source organism: Plasmodium falciparum (isolate Camp / Malaysia)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-08-01
Authors: Zhou, J., Xia, M., Yang, G., Li, P., Fang, P.
PDB entry 8k9t: Cryo-EM structure of the products-bound PGAP1(Bst1)-S327A from Chaetonium thermophilum
Classification: MEMBRANE PROTEIN
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719); Homo sapiens; Psychromonas sp. B3M02; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-08-01
Authors: Li, T., Hong, J., Qu, Q., Li, D.
PDB entry 8k9u: Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 2 (ADKI2)
Classification: LIGASE
Source organism: Plasmodium falciparum (isolate Camp / Malaysia)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2023-08-01
Authors: Zhou, J., Xia, M., Yang, G., Li, P., Fang, P.
PDB entry 8k9v: Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 3 (ADKI3)
Classification: LIGASE
Source organism: Plasmodium falciparum (isolate Camp / Malaysia)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-08-01
Authors: Zhou, J., Xia, M., Yang, G., Li, P., Fang, P.
PDB entry 8k9w: Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 4 (ADKI4)
Classification: LIGASE
Source organism: Plasmodium falciparum (isolate Camp / Malaysia)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-01
Authors: Zhou, J., Xia, M., Yang, G., Li, P., Fang, P.
PDB entry 8k9x: Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 5 (ADKI5)
Classification: LIGASE
Source organism: Plasmodium falciparum CAMP/Malaysia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-08-01
Authors: Zhou, J., Xia, M., Yang, G., Li, P., Fang, P.
PDB entry 8k9y: Crystal structure of Arabidopsis thaliana sulfotransferase SOT16 involved in glucosinolate biosynthesis
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-08-02
Authors: Iwamoto, Y., Saito, S., Teramoto, T., Kakuta, Y.
PDB entry 8k9z: Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-bound calmodulin
Classification: TOXIN
Source organism: Homo sapiens; Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-08-02
Authors: Lee, Y., Choi, S., Hwang, J., Kim, M.H.
PDB entry 8ka0: Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-bound calmodulin and a nicotinamide adenine dinucleotide (NAD+)
Classification: TOXIN
Source organism: Homo sapiens; Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-08-02
Authors: Lee, Y., Choi, S., Hwang, J., Kim, M.H.
PDB entry 8ka1: Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-free calmodulin
Classification: TOXIN
Source organism: Homo sapiens; Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2023-08-02
Authors: Lee, Y., Choi, S., Hwang, J., Kim, M.H.
PDB entry 8ka2: Crystal structure of the RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) from Vibrio vulnificus
Classification: TOXIN
Source organism: Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.38 Å
Deposited: 2023-08-02
Authors: Lee, Y., Choi, S., Hwang, J., Kim, M.H.
PDB entry 8ka3: Arabidopsis AP endonuclease ARP complex with 22bp THF-containing DNA
Classification: HYDROLASE/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-08-02
Authors: Guo, W.T., Wu, B.X.
PDB entry 8ka4: Arabidopsis AP endonuclease ARP complex with 21bp THF-containing DNA
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-02
Authors: Guo, W.T., Wu, B.X.
PDB entry 8ka5: Arabidopsis AP endonuclease ARP complex with 20bp THF-containing DNA
Classification: HYDROLASE/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-02
Authors: Guo, W.T., Wu, B.X.
PDB entry 8ka6: De novo design protein -NA7
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-02
Authors: Wang, S., Liu, Y.
PDB entry 8ka7: De novo design protein -NB7
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-02
Authors: Wang, S., Liu, Y.
PDB entry 8ka8: Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with golden hamster ACE2 (local refinement)
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Mesocricetus auratus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-08-02
Authors: Niu, S., Zhao, Z.N., Chai, Y., Gao, G.F.
PDB entry 8kaa: Crystal Structure of ChaU a ester cyclase from Streptomyces chartreusis
Classification: OXIDOREDUCTASE
Source organism: Streptomyces chartreusis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-08-02
Authors: Wang, Y., Ma, X.
PDB entry 8kab: Mycobacterium smegmatis 50S ribosomal subunit-HflX complex
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-02
Authors: Srinivasan, K., Banerjee, A., Sengupta, J.
PDB entry 8kac: De novo design protein -NX1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-08-02
Authors: Wang, S., Liu, Y.
PDB entry 8kad: Crystal structure of an antibody light chain tetramer with 3D domain swapping
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-02
Authors: Sakai, T., Mashima, T., Kobayashi, N., Ogata, H., Uda, T., Hifumi, E., Hirota, S.
PDB entry 8kae: 16d-bound human SPNS2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-08-03
Authors: He, Y., Duan, Y.
PDB entry 8kag: Crystal structure of SpyCas9 in complex with sgRNA and target RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.88 Å
Deposited: 2023-08-03
Authors: Chen, Y., Chen, J., Liu, L.
PDB entry 8kah: Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 18nt target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36 Å
Deposited: 2023-08-03
Authors: Chen, Y., Chen, J., Liu, L.
PDB entry 8kai: Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 17nt target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2023-08-03
Authors: Chen, Y., Chen, J., Liu, L.
PDB entry 8kaj: Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.42 Å
Deposited: 2023-08-03
Authors: Chen, Y., Chen, J., Liu, L.
PDB entry 8kak: Crystal structure of SpyCas9 in complex with sgRNA and 18nt target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2023-08-03
Authors: Chen, Y., Chen, J., Liu, L.
PDB entry 8kal: Crystal structure of SpyCas9 in complex with sgRNA and 17nt target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2023-08-03
Authors: Chen, Y., Chen, J., Liu, L.
PDB entry 8kam: Crystal structure of SpyCas9 in complex with sgRNA and 16nt target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.91 Å
Deposited: 2023-08-03
Authors: Chen, Y., Chen, J., Liu, L.
PDB entry 8kao: Glutamate dehydrogenase-69O
Classification: OXIDOREDUCTASE
Source organism: Saccharolobus solfataricus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-08-03
Authors: Sakuraba, H., Ohshima, T.
PDB entry 8kap: Glycoside hydrolase family 1 beta-glucosidase from Streptomyces griseus (ligand-free)
Classification: HYDROLASE
Source organism: Streptomyces griseus subsp. griseus NBRC 13350
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-03
Authors: Kumakura, H., Motouchi, S., Nakai, H., Nakajima, M.
PDB entry 8kar: Glutamate dehydrogenase-AKG
Classification: OXIDOREDUCTASE
Source organism: Saccharolobus solfataricus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-08-03
Authors: Sakuraba, H., Ohshima, T.
PDB entry 8kb0: Crystal structure of 01JD-AEAIIVAMV
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos; unidentified influenza virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-08-03
Authors: Tang, Z., Zhang, N.
PDB entry 8kb1: Crystal structure of 11JD
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos; unidentified influenza virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-08-03
Authors: Tang, Z., Zhang, N.
PDB entry 8kb2: Crystal Structure of M- and C-Domains of the shaft pilin LrpA from Ligilactobacillus ruminis - iodide derivative
Classification: CELL ADHESION
Source organism: Ligilactobacillus ruminis ATCC 25644
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-08-03
Authors: Prajapati, A., Palva, A., von Ossowski, I., Krishnan, V.
PDB entry 8kb3: Superoxide dismutase
Classification: OXIDOREDUCTASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-08-03
Authors: Zhai, L., Li, B.Q., Jia, H.H.
PDB entry 8kb4: Cryo-EM structure of human TMEM87A A308M
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human adenovirus C serotype 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-03
Authors: Han, A., Kim, H.M.