LiteFold/PDB huggingface dataset:
PDB entry 9xim: PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
Classification: ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
Source organism: Actinoplanes missouriensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1992-04-03
Authors: Janin, J.
PDB entry 9xj0: Crystal structure of SOD1 by serial synchrotron crystallography
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-11-04
Authors: Yapici, I., DeMirci, H.
PDB entry 9xji: Cryogenic structure of SOD1, determined as the SSX counterpart
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-11-04
Authors: Yapici, I., DeMirci, H.
PDB entry 9xjl: The LBD-TMD structure of homomeric GluA4 AMPA receptor
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-11-04
Authors: Li, X., Li, R., Wei, Y., Zhao, Y.
PDB entry 9xjm: The ATD structure of homomeric GluA4 AMPA receptor
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-11-04
Authors: Li, X., Li, R., Wei, Y., Zhao, Y.
PDB entry 9xko: High-resolution cryo-EM structure of Maltose Binding Protein
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2025-11-06
Authors: Park, K., Yoo, Y., Jeon, H., Choi, K., Kwon, E., Lim, H., Kim, D.Y., No, K.T.
PDB entry 9xkt: Crystal structure of the complex of the GH16 carrageenase SfGH16 from Saccharicrinis fermentans with an oligotetrasaccharide of iota-carrageenan
Classification: HYDROLASE
Source organism: Saccharicrinis fermentans DSM 9555 = JCM 21142
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-11-06
Authors: Chen, F., Chang, Y.
PDB entry 9xl7: Crystal structure of the complex of the GH16 carrageenase SfGH16 from Saccharicrinis fermentans with an oligotetrasaccharide of kappa-carrageenan
Classification: HYDROLASE
Source organism: Saccharicrinis fermentans DSM 9555 = JCM 21142
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-11-07
Authors: Chen, F., Chang, Y.
PDB entry 9xlc: Crystal structure of the GH16 carrageenase SfGH16 from Saccharicrinis fermentans
Classification: HYDROLASE
Source organism: Saccharicrinis fermentans DSM 9555 = JCM 21142
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-11-07
Authors: Chen, F., Chang, Y.
PDB entry 9xlu: Crystal structure of Staphylococcus aureus cystathionine gamma-lyase V129G
Classification: LYASE
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-11-08
Authors: Lee, U., Ha, N.C.
PDB entry 9xmj: A Potent and Selective ROR gamma Inhibitor for the Treatment of Autoimmune Diseases
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2025-11-10
Authors: Nomura, A., Akai, S., Yamaguchi, K., Adachi, T.
PDB entry 9xmm: Cryo-EM structure of Integrin alpha V beta 6 complex with a bicyclic inhibitory peptide
Classification: CELL ADHESION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-11-11
Authors: Wang, J.C., An, Y.N.
PDB entry 9xmy: Crystal structure of ASCT D62N mutant from Trypanosoma brucei in complex with succinyl-CoA and acetylacetone.
Classification: ELECTRON TRANSPORT
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-11-11
Authors: Mochizuki, K., Inaoka, D.K., Fukuda, K., Kurasawa, H., Iyoda, K., Nakai, U., Harada, S., Balogun, E.O., Mazet, M., Millerioux, Y., Bringaud, F., Boshart, M., Hirayama, K., Kita, K., Shiba, T.
PDB entry 9xnc: pilus-like-beta, a bacteria pilus-like structure obtained from a Karst cave from Guilin City, Guangxi Zhuang Autonomous Region, China
Classification: PROTEIN FIBRIL
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-11-12
Authors: Hu, M.X., Zhang, Q., Chen, S., Ge, Q.J., Wang, J.W., Yan, N., Qin, L.J.
PDB entry 9xnh: pilus-like-gamma, a bacteria pilus-Like structure obtained from a Karstcave from Guilin city, Guangxi ZhuangAutonomous Region, China
Classification: PROTEIN FIBRIL
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2025-11-12
Authors: Hu, M.X., Zhang, Q., Chen, S., Ge, Q.J., Wang, J.W., Yan, N., Qin, L.J.
PDB entry 9xoh: Crystal Structure of Redesigned HasAsm Variant (14-mutation) with Iron Tetraphenylporphyrin
Classification: TRANSPORT PROTEIN
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2025-11-13
Authors: Kim, S., Sugimoto, H., Shoji, O.
PDB entry 9xok: Crystal Structure of Redesigned HasAsm Variant (51-mutation) with Iron Tetraphenylporphyrin
Classification: TRANSPORT PROTEIN
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-11-13
Authors: Kim, S., Sugimoto, H., Shoji, O.
PDB entry 9xou: CryoEM structure of LacY with Trimbody
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli K-12; synthetic construct; Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-11-15
Authors: Song, J.Y., Wang, W.
PDB entry 9xpd: Crystal Structure of Redesigned HasAsm Variant (51-mutation) with Heme
Classification: TRANSPORT PROTEIN
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2025-11-16
Authors: Kim, S., Sugimoto, H., Shoji, O.
PDB entry 9xpe: Structure of the Portal and Adaptor Proteins of the Phage Phikz
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-11-16
Authors: Xiao, H., Peng, Z., Zhou, J., Liu, H.
PDB entry 9xpf: The structure of sheath and tube proteins of phage Phikz
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-11-16
Authors: Xiao, H., Peng, Z., Zhou, J., Liu, H.
PDB entry 9xpg: The structure of gp139 protein of phage phikz
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2025-11-16
Authors: Xiao, H., Peng, Z., Zhou, J., Liu, H.
PDB entry 9xph: The structure of baseplate central region of phage phikz
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2025-11-16
Authors: Xiao, H., Peng, Z., Zhou, J., Liu, H.
PDB entry 9xpi: Crystal Structure of Redesigned HasAsm Variant (48-mutation) with Heme
Classification: TRANSPORT PROTEIN
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.161 Å
Deposited: 2025-11-16
Authors: Kim, S., Sugimoto, H., Shoji, O.
PDB entry 9xps: The neck structure of the Phage Phikz
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-11-17
Authors: Xiao, H., Peng, Z., Zhou, J., Liu, H.
PDB entry 9xqb: Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-11-18
Authors: Miyashita, Y., Konno, R., Ogasawara, S., Okuda, Y., Takamuku, Y., Moriya, T., Saito, T., Murata, T., Ohara, O., Kawashima, Y.
PDB entry 9xqc: A composite Cryo-EM structure of GPR75
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli K-12; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-11-18
Authors: Yuan, Q., Wu, C.
PDB entry 9xqd: The structure of outer peripheral region in the phage phiKZ baseplate complex
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.53 Å
Deposited: 2025-11-18
Authors: Xiao, H., Peng, Z., Zhou, J., Liu, H.
PDB entry 9xqn: Cryo-EM structure of apo form of GPR75-bRIL-Fab complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2025-11-18
Authors: Wu, C., Yuan, Q.
PDB entry 9xqr: Cryo-EM structure of P1X1 in complex with BTFA
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-11-18
Authors: Zhang, H.
PDB entry 9xqs: Structure of the inner peripheral region in the phage phiKZ baseplate complex
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-11-18
Authors: Xiao, H., Peng, Z., Zhou, J., Liu, H.
PDB entry 9xri: Crystal structure of MTH1 in complex with acoramidis bound at the active site and protein-protein interface (molar ratio 1:24)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2025-11-19
Authors: Yokoyama, T., Nakamura, T., Goto, M., Kusaka, K.
PDB entry 9xrj: Crystal structure of MTH1 in complex with acoramidis
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2025-11-19
Authors: Yokoyama, T., Nakamura, T., Goto, M., Kusaka, K.
PDB entry 9xrl: Structure of mouse cytoplasmic lattice (CPL) repeating unit
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2025-11-19
Authors: Chi, P.L., Wang, X., Li, J.L., Deng, D.
PDB entry 9xro: LolCDE in complex with SMT-738_3
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-11-19
Authors: Dong, C.J., Li, H.T.
PDB entry 9xrw: Probing Positions 3 and 8: Insights into a 960 nm emissive DNA-Stabilized Silver Nanocluster
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-11-20
Authors: Romolini, G., Kanazawa, H., Cerretani, C., Huang, Z., Kondo, J., Vosch, T.
PDB entry 9xs1: Crystal structure of FOXM1 DNA binding domain to specific dsDNA substrate
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-11-20
Authors: Lv, M.Q., Sun, M.X., Zhou, W.W.
PDB entry 9xs8: Crystal structure of a cupin protein (tm1459, H52A/H54A/H92A/C106E mutant) in ruthenium(p-cymene) bound form
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.265 Å
Deposited: 2025-11-20
Authors: Matsumoto, K., Matsumoto, R., Morita, Y., Fujieda, N.
PDB entry 9xs9: Crystal structure of a cupin protein (tm1459, R39K/H52A/H54A/H92A/C106E mutant) in ruthenium(p-cymene) bound form
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.087 Å
Deposited: 2025-11-20
Authors: Matsumoto, K., Matsumoto, R., Morita, Y., Fujieda, N.
PDB entry 9xsa: Crystal structure of a cupin protein (tm1459, R39M/H52A/H54A/H92A/C106E mutant) in ruthenium(p-cymene) bound form
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.423 Å
Deposited: 2025-11-20
Authors: Matsumoto, K., Matsumoto, R., Morita, Y., Fujieda, N.
PDB entry 9xsx: the complex structure of antibody CF22 bound to the hemagglutinin of influenza B virus (HA_B/Guangdong-Yuexiu/120/2022).
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza B virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2025-11-21
Authors: Ge, J.W., Fan, M.
PDB entry 9xtc: E.coli delta lepA 30S ribosomal subunit class C, body domain
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-11-22
Authors: Kravchenko, O.V., Maksimova, E.M., Baymukhametov, T.N., Stolboushkina, E.A.
PDB entry 9xtd: E.coli delta lepA 30S ribosomal subunit class B, body domain
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2025-11-22
Authors: Kravchenko, O.V., Maksimova, E.M., Baymukhametov, T.N., Stolboushkina, E.A.
PDB entry 9xte: E.coli delta lepA 30S ribosomal subunit class A, body domain
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2025-11-22
Authors: Kravchenko, O.V., Maksimova, E.M., Baymukhametov, T.N., Stolboushkina, E.A.
PDB entry 9xth: The complex structure of antibody CAV-CH76 bound to the hemagglutinin of influenza B virus (HA_B/Guangdong-Yuexiu/120/2022)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza B virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2025-11-22
Authors: Ge, J.W., Fan, M.
PDB entry 9xu9: Crystal structure of EGFR T790M/C797S/L858R mutant in complex with (2-((5-chloro-2-((2-methoxy-4-(4-methylpiperazin-1-yl)-5-nitrophenyl)amino)pyrimidin-4-yl)amino)phenyl)dimethylphosphine oxide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2025-11-24
Authors: Wang, Y.Y., Ma, L.L.
PDB entry 9xua: Hen Egg-White Lysozyme (HEWL) complexed with Caffeine
Classification: ANTIMICROBIAL PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-11-24
Authors: Roy, A., Khanppnavar, B., Dolui, S., Chakraborty, B., Datta, S., Maiti, N.C.
PDB entry 9xub: Crystal Structure of Thioredoxin reductase from Mycobacterium tuberculosis.
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-11-24
Authors: Li, Z.Y., Niu, W.C., Gong, Y., Xu, Y.C., Cao, P.
PDB entry 9xuk: ADP-Glucose Pyrophosphorylase
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-11-24
Authors: Wu, Y.T., Lin, H.J., Fan, M.R.
PDB entry 9xul: Pi-bound ADP-Glucose Pyrophosphorylase
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-11-24
Authors: Wu, Y.T., Lin, H.J., Fan, M.R.
PDB entry 9xum: 3PGA-bound ADP-Glucose Pyrophosphorylase
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-11-24
Authors: Wu, Y.T., Lin, H.J., Fan, M.R.
PDB entry 9xur: ADPG-bound ADP-Glucose Pyrophosphorylase
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-11-24
Authors: Wu, Y.T., Lin, H.J., Fan, M.R.
PDB entry 9xus: ATP-bound ADP-Glucose Pyrophosphorylase
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-11-24
Authors: Wu, Y.T., Lin, H.J., Fan, M.R.
PDB entry 9xv1: Crystal Structure of Fructose-1,6-bisphosphatase Complexed with a Covalent Inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-11-25
Authors: Cao, H., Huang, Z., Hu, X., Li, W., Chang, M., Zhang, Y., Chu, Y.
PDB entry 9xv9: Crystal structure of single-strand DNA-stabilized Ag16 nanocluster: T5 linker
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-11-26
Authors: Ruck, V., Kanazawa, H., Huang, Z., Kondo, J., Vosch, T.
PDB entry 9xva: Crystal structure of single-strand DNA-stabilized Ag16 nanocluster: T6 linker
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-11-26
Authors: Ruck, V., Kanazawa, H., Huang, Z., Kondo, J., Vosch, T.
PDB entry 9xvc: Cryo-EM Helical Structure of the dITP-KomBC(H146N) Complex with NAD Fragments
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-11-26
Authors: Xie, W., Feng, H., Luo, M.
PDB entry 9xvd: Crystal structure of NFIC homodimer bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-11-26
Authors: Pan, S.L., Min, J.R., Liu, K.
PDB entry 9xve: Arabidopsis ISA1-ISA1 homodimer
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2025-11-26
Authors: Wang, R.Y., Lin, H.J., Fan, M.R.
PDB entry 9xvf: Crystal structure of NFIA monomer bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-11-26
Authors: Pan, S.L., Min, J.R., Liu, K.
PDB entry 9xvg: Maltoheptaose-incubated Arabidopsis ISA1-ISA1 homodimer
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-11-26
Authors: Wang, R.Y., Lin, H.J., Fan, M.R.
PDB entry 9xvh: Crystal structure of mature Bacteroides fragilis toxin 1
Classification: TOXIN
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-11-26
Authors: Fu, G., Zhao, X., Chai, Y., Wang, L.
PDB entry 9xvi: Arabidopsis ISA2-ISA1-ISA1-ISA2 heterotetramer
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-11-26
Authors: Wang, R.Y., Lin, H.J., Fan, M.R.
PDB entry 9xvo: Crystal structure of NFIC monomer bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-11-26
Authors: Pan, S.L., Min, J.R., Liu, K.
PDB entry 9xvp: Arabidopsis ISA2-ISA1-ISA1 heterotrimer
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-11-26
Authors: Wang, R.Y., Lin, H.J., Fan, M.R.
PDB entry 9xvq: Crystal structure of the NFIA-N0 DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2025-11-26
Authors: Pan, S.L., Min, J.R., Liu, K.
PDB entry 9xvs: Phosphoglycerate mutase 1 complexed with a novel scaffold inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-11-27
Authors: Li, S., Zhou, L.
PDB entry 9xvv: Maltoheptaose-bound Arabidopsis ISA2-ISA1-ISA1 heterotrimer
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-11-27
Authors: Wang, R.Y., Lin, H.J., Fan, M.R.
PDB entry 9xvw: Crystal structure of mature Bacteroides fragilis toxin 2
Classification: TOXIN
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-11-27
Authors: Fu, G., Zhao, X., Chai, Y., Wang, L.
PDB entry 9xw3: CspB from Mycobacterium tuberculosis
Classification: RNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2025-11-27
Authors: Nikulin, A.D., Lekontseva, N.V., Pankratova, P.Y.
PDB entry 9xw4: Phosphoglycerate mutase 1 complexed with a novel scaffold inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-11-27
Authors: Li, S., Zhou, L.
PDB entry 9xwt: Phosphoglycerate mutase 1 complexed with a novel scaffold inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-11-28
Authors: Li, S., Zhou, L.
PDB entry 9xwu: Crystal structure of E.coli CDP-diacylglycerol pyrophosphatase (Cdh) complexed with AMP
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2025-11-28
Authors: Kim, J., Salsabila, S.D.
PDB entry 9xwv: Crystal structure of E.coli CDP-diacylglycerol pyrophosphatase (Cdh) complexed with CMP
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-11-28
Authors: Kim, J., Salsabila, S.D.
PDB entry 9xxt: Cryo-EM structure of lysophosphatidylserine (18:0)-bound GPR174-Gs complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2025-12-01
Authors: Dong, Y.-J., Xi, K., Zhang, Y.-Z., Xue, J.-H., Shen, D.-D., Zang, S.-K., Zhao, R.-Z., Qi, H., Mao, C.-Y., Wang, W.-W., Zhang, Y.
PDB entry 9xxu: Crystal structure of the chymotrypsin-cleaved iron-free C-lobe of bovine lactoferrin at 2.82 Angstrom resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2025-12-01
Authors: Pandit, S., Ahmad, N., Sharma, P., Sharma, S., Singh, T.P.
PDB entry 9xy1: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.923 Å
Deposited: 2025-08-25
Authors: Werther, R., Stoddard, B.L.
PDB entry 9xy2: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.402 Å
Deposited: 2025-08-25
Authors: Werther, R., Schwensen, J.S., Stoddard, B.L.
PDB entry 9xy4: Zymogen ADAM17- iRhom1 Cytoplasmic Deletion (370) Complex Bound by the MEDI3622 Fab
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-08-25
Authors: Ungvary, J.N., Maciag, J.J., Seegar, T.C.M.
PDB entry 9xy5: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.612 Å
Deposited: 2025-08-25
Authors: Werther, R., Stoddard, B.L.
PDB entry 9xy6: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.693 Å
Deposited: 2025-08-25
Authors: Werther, R., Stoddard, B.L.
PDB entry 9xy8: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2025-08-25
Authors: Werther, R., Stoddard, B.L.
PDB entry 9xy9: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.995 Å
Deposited: 2025-08-25
Authors: Werther, R., Stoddard, B.L.
PDB entry 9xya: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.303 Å
Deposited: 2025-08-25
Authors: Werther, R., Stoddard, B.L.
PDB entry 9xyb: Crystal structure of a ZIKV E glycoprotein DI-DIII vaccine candidate in complex with human neutralizing antibody MZ4
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-08-25
Authors: Jensen, J.L., Joyce, M.G.
PDB entry 9xyc: Pol II-DSIF-SPT6-PAF1c-TFIIS-IWS1-ELOF1-LEDGF-nucleosome LEDGF+nucleosome map Q
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-08-25
Authors: Syau, D., Farnung, L.
PDB entry 9xye: Two CAP-1 Bound to the Pointed End of F-actin
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-08-25
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9xyi: hPNPase RNA loading state
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2025-08-26
Authors: Unseld, O., Das, H., Hallberg, B.M.
PDB entry 9xyk: Human prolyl endopeptidase (PREP) - complex with JP-7-1-7
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-08-26
Authors: Fucci, I.J., Thakur, K., Pandian, J., Yoo, E., Monteiro, D.C.F.
PDB entry 9xyl: Human prolyl endopeptidase (PREP) - complex with S17092
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-08-26
Authors: Fucci, I.J., Yoo, E., Monteiro, D.C.F.
PDB entry 9xym: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) in complex with Jun13698
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2025-08-26
Authors: Kohaal, N., Wang, J., Chen, Y.
PDB entry 9xyu: NER complex - C7CAD.ATP
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-08-26
Authors: Li, C.L., Kim, J., Yang, W.
PDB entry 9xyx: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) T169S Mutant
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2025-08-26
Authors: Kohaal, N., Wang, J., Chen, Y.
PDB entry 9xyz: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) E166V Mutant
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2025-08-26
Authors: Kohaal, N., Wang, J., Chen, Y.
PDB entry 9xz1: KRAS(G12C)-RNK07311-HSP90(N-terminus)
Classification: CHAPERONE/ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-08-26
Authors: Prince, T.L., Wang, Y., Ying, C., Foley, K.P., Ying, W.
PDB entry 9xz6: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) in complex with Jun13699
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2025-08-26
Authors: Kohaal, N., Lewandowski, E.M., Wang, J., Chen, Y.
PDB entry 9xzf: hPNPase RNA loading state with extended RNA in the bottom
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-08-27
Authors: Unseld, O., Das, H., Hallberg, B.M.
PDB entry 9xzi: Crystal Structure of the SUZ12-RBBP4-PHF19-EPOP PRC2.1 Subcomplex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.691 Å
Deposited: 2025-08-27
Authors: Yang, X., Liu, X.
PDB entry 9xzj: Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-08-27
Authors: Mullins, E.A., Schiltz, C.J., Eichman, B.F.
PDB entry 9xzk: Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2025-08-27
Authors: Mullins, E.A., Schiltz, C.J., Eichman, B.F.
PDB entry 9xzl: Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-08-27
Authors: Mullins, E.A., Schiltz, C.J., Eichman, B.F.
PDB entry 9xzm: Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.27 Å
Deposited: 2025-08-27
Authors: Mullins, E.A., Schiltz, C.J., Eichman, B.F.
PDB entry 9xzn: Teichoic acid flippase TacF from Streptococcus pneumoniae
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Streptococcus pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2025-08-27
Authors: Cebrero, G., Chidananda, H.A., Denereaz, J.L., Cester, E., Mathew, A.T., Bhowmik, D.R., Capitani, M., Reymond, J.L., Kannan, N., Veening, J.W., Mehdipour, A.R., Perez, C.
PDB entry 9xzo: Crystal structure of AI-designed response regulator like protein M1X0B
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-08-27
Authors: Wei, K.Y.
PDB entry 9xzp: Crystal structure of AI-designed homodimer MIYEI
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.773 Å
Deposited: 2025-08-27
Authors: Wei, K.Y.
PDB entry 9xzq: Trm10-tRNA complex (closed conformation)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2025-08-27
Authors: Nandi, S., Strassler, S.E., Conn, G.L.
PDB entry 9xzr: Trm10-tRNA complex (open conformation)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Saccharomyces cerevisiae BMN1-35; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-08-27
Authors: Nandi, S., Strassler, S.E., Conn, G.L.
PDB entry 9xzs: Trm10-tRNA complex (Two Trm10 monomers bound to one tRNA)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2025-08-27
Authors: Nandi, S., Strassler, S.E., Conn, G.L.
PDB entry 9xzt: Crystal structure of BBn6
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-08-27
Authors: Bera, A.K., Kim, D., Baker, D.
PDB entry 9xzu: Rubredoxin from Pyrococcus Furiosus at 100K, Alanine-2 N terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.825 Å
Deposited: 2025-08-27
Authors: Doukov, T., Cramer, S.J., George, D., Jenney, F.E.
PDB entry 9xzy: DEPDC5 dimer (tandem DEPDC5) focused map
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-08-28
Authors: Bayly-Jones, C., Lupton, C.J., Chang, Y.G., Ellisdon, A.M.
PDB entry 9xzz: Human prolyl endopeptidase (PREP) - complex with KYP2047
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-08-28
Authors: Fucci, I.J., Thakur, K., Yoo, E., Monteiro, D.C.F.
PDB entry 9y00: Zinc Rubredoxin from Pyrococcus Furiosus at 140K, A2 Nterminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.83 Å
Deposited: 2025-08-28
Authors: Doukov, T., Cramer, S.J., George, D., Jenney, F.E.
PDB entry 9y03: Cryo-EM structure of human VCP/p97-R89W mutant bound to ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y04: Cryo-EM structure of human VCP/p97-R89W mutant bound to ATPgammaS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y05: Cryo-EM structure of human VCP/p97-R89W mutant bound to CB-5083
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y06: Cryo-EM structure of human VCP/p97-T122P mutant bound to ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y07: Cryo-EM structure of human VCP/p97-T122P mutant bound to ATPgammaS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y08: Cryo-EM structure of human VCP/p97-G128D mutant bound to ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y09: Cryo-EM structure of human VCP/p97-G128D mutant bound to ATPgS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y0a: Crystal structure of Bet v 1.0101 in complex with human IgE Fab 2H22
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Betula pendula; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2025-08-28
Authors: O'Malley, A., Borders, B.T., Smith, S.A., Chruszcz, M.
PDB entry 9y0b: Cryo-EM structure of human VCP/p97-G156D mutant bound to ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y0c: Cryo-EM structure of human VCP/p97-G156D mutant bound to ATPgammaS
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-08-28
Authors: Lehman, A., Ahmed, S., Mohajeri, A., Yang, G.X., Berezuk, A.M., Mannar, D., Cholak, S., Tuttle, K.S., Bennett, J.T., Magno, J.A., Hannibal, M., Kovacevic, G., Kuburovic, V., Lewis, M.E.S., Moldovan, O., Nelson, Z., Raskin, S., Vandersteen, A.M., Roach, J.C., Subramaniam, S., Patel, M.S.
PDB entry 9y0d: Crystal structure of human IgE Fab 2H22
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2025-08-28
Authors: O'Malley, A., Borders, B.T., Smith, S.A., Chruszcz, M.
PDB entry 9y0e: Crystal structure of Bet v 1.0101 in complex with human IgE Fab 2H22
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Betula pendula; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-08-28
Authors: O'Malley, A., Borders, B.T., Smith, S.A., Chruszcz, M.
PDB entry 9y0g: Crystal structure of NRas-G12D in complex with GDP and compound 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-28
Authors: Johnson, T.A., Cross, J.B.
PDB entry 9y0i: Crystal structure of designed switching homodimer CSD20f3A
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2025-08-28
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9y0k: Structure of Plasmodium falciparum 20S proteasome with bound J80
Classification: HYDROLASE/INHIBITOR
Source organism: Plasmodium falciparum Dd2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-08-28
Authors: Zhang, H., Zhao, J., Fajtova, P., O'Donoghue, A.J.
PDB entry 9y0l: Incorrectly assembled half-Pf20S
Classification: HYDROLASE
Source organism: Plasmodium falciparum Dd2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-08-28
Authors: Zhang, H., Zhao, J., Fajtova, P., O'Donoghue, A.J.
PDB entry 9y0m: Crystal structure of Escherichia coli DsbA P151T mutant
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2025-08-28
Authors: Cunliffe, T.R., Heras, B., Paxman, J.J.
PDB entry 9y0n: Crystal structure of Escherichia coli DsbA G149K mutant
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-28
Authors: Cunliffe, T.R., Heras, B., Paxman, J.J.
PDB entry 9y0o: Crystal structure of Escherichia coli DsbA G149T mutant
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-08-28
Authors: Cunliffe, T.R., Heras, B., Paxman, J.J.
PDB entry 9y0p: Crystal structure of Escherichia coli DsbA C33A mutant in complex with a peptide derived from LptD - Binding mode I
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-08-28
Authors: Cunliffe, T.R., Heras, B., Paxman, J.J.
PDB entry 9y0q: Crystal structure of Escherichia coli DsbA C33A mutant in complex with a peptide derived from LptD - Binding mode II
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-08-28
Authors: Cunliffe, T.R., Heras, B., Paxman, J.J.
PDB entry 9y0r: Importin alpha 2 in complex with ATF2 basic region
Classification: PROTEIN TRANSPORT
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-08-29
Authors: Ghafoori, S.M., Forwood, J.K.
PDB entry 9y0s: CryoEM structure of alpha-synuclein fibril induced by psychosine
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-08-29
Authors: Jenkins, R.A., Sun, C.Q., Sawaya, M.R., Rodriguez, J.A.
PDB entry 9y0y: Rubredoxin from Pyrococcus Furiosus at 180K, Alanine-2 N terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.852 Å
Deposited: 2025-08-29
Authors: Doukov, T., Cramer, S.J., George, D., Jenney, F.E.
PDB entry 9y0z: Rubredoxin from Pyrococcus Furiosus at 200K, Alanine-2 N terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.86 Å
Deposited: 2025-08-29
Authors: Doukov, T., Cramer, S.J., George, D., Jenney, F.E.
PDB entry 9y11: Zn Rubredoxin from Pyrococcus Furiosus at 220K, Alanine-2 N terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.91 Å
Deposited: 2025-08-29
Authors: Doukov, T., Cramer, S.J., George, D., Jenney, F.E.
PDB entry 9y12: Crystal Structure of N-Acetyl Transferase Domain-Containing Protein from Bacteroides fragilis
Classification: TRANSFERASE
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-08-29
Authors: Kim, Y., Bigelow, L., Clancy, L., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 9y15: WT human DNA polymerase beta, Binary complex templating dA
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y16: WT human DNA polymerase beta, Binary complex templating dG
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y17: WT human DNA polymerase beta, Binary complex templating dT
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y18: WT human DNA polymerase beta, Binary complex templating dC
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y19: WT human DNA polymerase beta, Ternary complex dA:dUmpNpp
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1a: WT human DNA polymerase beta, Ternary complex dT:dAmpCpp
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1b: WT human DNA polymerase beta, Ternary complex dC:dGmpCpp
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1c: WT human DNA polymerase beta, Ternary complex dG:dCmpCpp
Classification: REPLICATION, HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1d: S180R human DNA polymerase beta, Binary complex templating dA
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1e: S180R human DNA polymerase beta, Binary complex templating dG
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1f: S180R human DNA polymerase beta, Binary complex templating dT
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1g: S180R human DNA polymerase beta, Binary complex templating dC
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1h: S180R human DNA polymerase beta, Ternary complex dA:dUmpNpp
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1i: S180R human DNA polymerase beta, Ternary complex dG:dCmpCpp
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1j: S180R human DNA polymerase beta, Ternary complex dT:dAmpCpp
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1k: S180R human DNA polymerase beta, Ternary complex dC:dGmpCpp
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-08-29
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9y1l: Crystal Structure of Putative Restriction Endonuclease Domain-Containing Protein from Leptospirillum ferriphilum YSK
Classification: HYDROLASE
Source organism: Leptospirillum ferriphilum YSK
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-08-29
Authors: Kim, Y., Xu, X., Cui, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 9y1o: The structure of the Plasmodium falciparum 20S proteasome
Classification: HYDROLASE
Source organism: Plasmodium falciparum Dd2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-08-29
Authors: Zhang, H., Zhao, J., Fajtova, P., O'Donoghue, A.J.
PDB entry 9y1u: Rubredoxin from Pyrococcus Furiosus at 240K, Alanine-2 N terminus
Classification: ELECTRON TRANSPORT
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2025-08-31
Authors: Doukov, T., Cramer, S.J., George, D., Jenney, F.E.