LiteFold/PDB huggingface dataset:
PDB entry 8sli: Cryo-EM structure of the rat TRPM5 channel in 2mM calcium, high-1
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2023-04-21
Authors: Karuppan, S., Schrag, L.G., Jara-Oseguera, A., Zubcevic, L.
PDB entry 8slj: K164A mutant of a chlorogenic acid esterase from Lactobacillus helveticus
Classification: HYDROLASE
Source organism: Lactobacillus helveticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.101 Å
Deposited: 2023-04-22
Authors: Owens, C.P., Omori, K.K.
PDB entry 8slm: Crystal structure of Deinococcus geothermalis PprI
Classification: HYDROLASE
Source organism: Deinococcus geothermalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2023-04-23
Authors: Zhao, Y., Lu, H.
PDB entry 8sln: Crystal structure of Deinococcus geothermalis PprI complexed with ssDNA
Classification: HYDROLASE/DNA
Source organism: Deinococcus geothermalis DSM 11300; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-04-23
Authors: Zhao, Y., Lu, H.
PDB entry 8slo: Plasmodium falciparum M1 aminopeptidase bound to selective inhibitor MIPS2673
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-04-24
Authors: McGowan, S.M., Drinkwater, N.
PDB entry 8slp: Cryo-EM structure of the rat TRPM5 channel in 2mM calcium, high-2
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-04-24
Authors: Karuppan, S., Schrag, L.G., Jara-Oseguera, A., Zubcevic, L.
PDB entry 8slq: Cryo-EM structure of the rat TRPM5 channel in 2mM calcium, high-3
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-04-24
Authors: Karuppan, S., Schrag, L.G., Jara-Oseguera, A., Zubcevic, L.
PDB entry 8slr: Crystal Structure of mouse TRAIL
Classification: CYTOKINE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-04-24
Authors: Pedersen, L.C., Xu, D.
PDB entry 8sls: Crystal structure of human STEP (PTPN5) at cryogenic temperature (100 K) and ambient pressure (0.1 MPa)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-04-24
Authors: Ebrahim, A., Guerrero, L., Riley, B.T., Kim, M., Huang, Q., Finke, A.D., Keedy, D.A.
PDB entry 8slt: Crystal structure of human STEP (PTPN5) at physiological temperature (310 K) and ambient pressure (0.1 MPa)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-04-24
Authors: Ebrahim, A., Guerrero, L., Riley, B.T., Kim, M., Huang, Q., Finke, A.D., Keedy, D.A.
PDB entry 8slu: Crystal structure of human STEP (PTPN5) at cryogenic temperature (100 K) and high pressure (205 MPa)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-04-24
Authors: Ebrahim, A., Guerrero, L., Riley, B.T., Kim, M., Huang, Q., Finke, A.D., Keedy, D.A.
PDB entry 8slv: Structure of a salivary alpha-glucosidase from the mosquito vector Aedes aegypti.
Classification: HYDROLASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-04-24
Authors: Gittis, A.G., Williams, A.E., Garboczi, D., Calvo, E.
PDB entry 8slw: Cryo-EM structure of the rat TRPM5 channel in 2mM calcium, high-4
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-04-24
Authors: Karuppan, S., Schrag, L.G., Jara-Oseguera, A., Zubcevic, L.
PDB entry 8slx: Rat TRPV2 bound with 1 CBD ligand in nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-04-24
Authors: Tan, X., Swartz, K.J.
PDB entry 8sly: Rat TRPV2 bound with 2 CBD ligands in nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-04-24
Authors: Tan, X., Swartz, K.J.
PDB entry 8slz: Crystal structure of phosphorylated (T357/S358) human MLKL pseudokinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-25
Authors: Meng, Y., Davies, K.A., Czabotar, P.E., Murphy, J.M.
PDB entry 8sm0: Crystal structure of human complement receptor 2 (CD21) in complex with Epstein-Barr virus major glycoprotein gp350
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human herpesvirus 4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-04-25
Authors: Chen, W.-H., Bu, W., Cohen, J.I., Kanekiyo, M., Joyce, M.G.
PDB entry 8sm1: CRYSTAL STRUCTURE OF HUMAN ANTIBODY 769A9 IN COMPLEX WITH EPSTEIN-BARR VIRUS MAJOR GLYCOPROTEIN GP350
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human herpesvirus 4
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2023-04-25
Authors: Chen, W.-H., Bu, W., Cohen, J.I., Kanekiyo, M., Joyce, M.G.
PDB entry 8sm2: Crystal Structure of the macaque FcalphaRI bound to macaque IgA Fc.
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-04-25
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 8sm3: Structure of Bacillus cereus VD045 Gabija GajA-GajB Complex
Classification: DNA BINDING PROTEIN/Hydrolase
Source organism: Bacillus cereus VD045
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-04-25
Authors: Antine, S.P., Mooney, S.E., Johnson, A.G., Kranzusch, P.J.
PDB entry 8sm5: Crystal Structure of BHRF1 from Epstein Barr Virus in complex with BID BH3 peptide
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human herpesvirus 4 strain B95-8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61003 Å
Deposited: 2023-04-25
Authors: Wyatt, S., Sinha, S.
PDB entry 8sm6: Aerobic, Diiron(III)-metalated SfbO
Classification: OXIDOREDUCTASE
Source organism: Litorilinea aerophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2023-04-25
Authors: Liu, C., Powell, M.M., Rittle, J.
PDB entry 8sm7: Air-oxidized G. y4 TruffO expressed from M9 minimal medium supplemented with Fe
Classification: OXIDOREDUCTASE
Source organism: Paenibacillus sp. Y412MC10
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-04-25
Authors: Liu, C., Rittle, J.
PDB entry 8sm8: Air-oxidized A. ca TruffO expressed from M9 minimal medium supplemented with Fe
Classification: OXIDOREDUCTASE
Source organism: Afipia carboxidovorans OM5
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-04-25
Authors: Liu, C., Rittle, J.
PDB entry 8sm9: Air-oxidized C. fi TruffO expressed from M9 minimal medium supplemented with Fe
Classification: OXIDOREDUCTASE
Source organism: Cytobacillus firmus DS1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-25
Authors: Liu, C., Rittle, J.
PDB entry 8sma: SfbO with di-Manganese cofactor
Classification: OXIDOREDUCTASE
Source organism: Litorilinea aerophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2023-04-25
Authors: Liu, C., Rittle, J.
PDB entry 8smc: Cryo-EM structure of LRRK2 bound with type-I inhibitor DNL201
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2023-04-26
Authors: Sun, J., Zhu, H.
PDB entry 8smd: Structure of Clostridium botulinum prophage Tad1 in complex with 1''-3' gcADPR
Classification: UNKNOWN FUNCTION
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-04-26
Authors: Lu, A., Yirmiya, E., Leavitt, A., Avraham, C., Osterman, I., Garb, J., Antine, S.P., Mooney, S.E., Hobbs, S.J., Amitai, G., Sorek, R., Kranzusch, P.J.
PDB entry 8sme: Structure of SPO1 phage Tad2 in apo state
Classification: VIRAL PROTEIN
Source organism: Okubovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2023-04-26
Authors: Lu, A., Yirmiya, E., Leavitt, A., Avraham, C., Osterman, I., Garb, J., Antine, S.P., Mooney, S.E., Hobbs, S.J., Amitai, G., Sorek, R., Kranzusch, P.J.
PDB entry 8smf: Structure of SPO1 phage Tad2 in complex with 1''-3' gcADPR
Classification: VIRAL PROTEIN
Source organism: Okubovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-04-26
Authors: Lu, A., Yirmiya, E., Leavitt, A., Avraham, C., Osterman, I., Garb, J., Antine, S.P., Mooney, S.E., Hobbs, S.J., Amitai, G., Sorek, R., Kranzusch, P.J.
PDB entry 8smg: Structure of SPO1 phage Tad2 in complex with 1''-2' gcADPR
Classification: VIRAL PROTEIN
Source organism: Okubovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-04-26
Authors: Lu, A., Yirmiya, E., Leavitt, A., Avraham, C., Osterman, I., Garb, J., Antine, S.P., Mooney, S.E., Hobbs, S.J., Amitai, G., Sorek, R., Kranzusch, P.J.
PDB entry 8smh: Chimeric ETS-domain of murine PU.1 harboring the corresponding beta-strand 3 (S3) residues from murine Ets-1 in complex with d(AATAAGCGGAAGTGGG)
Classification: TRANSCRIPTION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-04-26
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8smi: Crystal structure of antibody WRAIR-2123 in complex with SARS-CoV-2 receptor binding domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-04-26
Authors: Sankhala, R.S., Jensen, J.L., Joyce, M.G.
PDB entry 8smj: Chimeric ETS-domain of murine PU.1 harboring the corresponding beta-strand 3 (S3) residues from murine Ets-1 in complex with d(AATAAGCGGAATGGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2023-04-26
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8smk: hPAD4 bound to Activating Fab hA362
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-04-26
Authors: Maker, A., Verba, K.A.
PDB entry 8sml: hPAD4 bound to inhibitory Fab hI365
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-26
Authors: Maker, A., Verba, K.A.
PDB entry 8smm: Xenopus laevis hyaluronan synthase 1
Classification: Transferase/Immune System
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-26
Authors: Gorniak, I., Zimmer, J.
PDB entry 8smn: Xenopus laevis hyaluronan synthase 1, nascent HA polymer bound state
Classification: Transferase/Immune System
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-26
Authors: Gorniak, I., Zimmer, J.
PDB entry 8smo: Crystal structure of the complex between truncated MLLE domain of PABPC1 and engineered superPAM2 peptide
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-04-26
Authors: Kozlov, G., Gehring, K.
PDB entry 8smp: Xenopus laevis hyaluronan synthase 1, UDP-bound, gating loop inserted state
Classification: Transferase/Immune System
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-26
Authors: Gorniak, I., Zimmer, J.
PDB entry 8smq: Crystal Structure of the N-terminal Domain of the Cryptic Surface Protein (CD630_25440) from Clostridium difficile.
Classification: UNKNOWN FUNCTION
Source organism: Clostridioides difficile 630
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-04-26
Authors: Minasov, G., Shuvalova, L., Brunzelle, J.S., Kiryukhina, O., Wawrzak, Z., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID), Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8smr: cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-04-26
Authors: Di Trani, J.M., Rubinstein, J.L.
PDB entry 8sms: Crosslinked Crystal Structure of Type II Fatty Acid Synthase, FabB, and cerulenin crosslinker-crypto Acyl Carrier Protein, AcpP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Atlantibacter hermannii NBRC 105704; Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-04-26
Authors: Jiang, Z., Chen, A., Chen, J., Sekhon, A., Louie, G.V., Noel, J.P., La Clair, J.J., Burkart, M.D.
PDB entry 8smt: Crystal structure of antibody WRAIR-2134 in complex with SARS-CoV-2 receptor binding domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2023-04-26
Authors: Sankhala, R.S., Jensen, J.L., Joyce, M.G.
PDB entry 8smu: Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria; Corynebacterium diphtheriae NCTC 13129
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-04-26
Authors: Mahoney, B.J., Cascio, D., Clubb, R.T.
PDB entry 8smv: GPR161 Gs heterotrimer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2023-04-26
Authors: Hoppe, N., Manglik, A., Harrison, S.
PDB entry 8smw: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 1)
Classification: STRUCTURAL PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8smx: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 2)
Classification: STRUCTURAL PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8smy: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 3)
Classification: STRUCTURAL PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8smz: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (Class 4)
Classification: STRUCTURAL PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn0: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 5)
Classification: STRUCTURAL PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn1: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 6)
Classification: STRUCTURAL PROTEIN/DNA/TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn2: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c (UbcH5c chemically conjugated to histone H2A)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn3: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 1)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn4: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 2)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn5: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 3)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn6: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 4)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn7: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 5)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn8: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 6)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sn9: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with backside ubiquitin (UbcH5c chemically conjugated to histone H2A) (class 1)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8sna: Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with backside ubiquitin (UbcH5c chemically conjugated to histone H2A) (class 2)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-04-26
Authors: Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, G.
PDB entry 8snb: atomic model of sea urchin sperm doublet microtubule (48-nm periodicity)
Classification: STRUCTURAL PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-04-26
Authors: Zeng, J., Zhang, R.
PDB entry 8snc: Chlorella virus Hyaluronan Synthase bound to GlcA extended GlcNAc primer
Classification: TRANSFERASE
Source organism: Lama glama; Paramecium bursaria Chlorella virus CZ-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-04-27
Authors: Stephens, Z., Zimmer, J.
PDB entry 8snd: Chlorella virus Hyaluronan Synthase bound to GlcNAc primer and UDP-GlcA
Classification: TRANSFERASE
Source organism: Lama glama; Paramecium bursaria Chlorella virus CZ-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-04-27
Authors: Stephens, Z., Zimmer, J.
PDB entry 8sne: Chlorella virus Hyaluronan Synthase bound to GlcA extended GlcNAc primer and UDP
Classification: TRANSFERASE
Source organism: Lama glama; Paramecium bursaria Chlorella virus CZ-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-04-27
Authors: Stephens, Z., Zimmer, J.
PDB entry 8snf: Crystal structure of metformin hydrolase (MfmAB) from Pseudomonas mendocina sp. MET-2 with Ni2+2 bound
Classification: HYDROLASE
Source organism: Pseudomonas mendocina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-04-27
Authors: Tassoulas, L.J., Rankin, J.A., Elias, M.H., Wackett, L.P.
PDB entry 8sng: Crystal Structure of ArnB Transferase from Klebsiella aerogenes (Lattice Translocation Disorder, P21 form)
Classification: TRANSFERASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-04-27
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8snh: cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-04-27
Authors: Di Trani, J.M., Rubinstein, J.L.
PDB entry 8sni: Hydroxynitrile Lyase from Hevea brasiliensis with Forty Mutations
Classification: LYASE
Source organism: Hevea brasiliensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-04-27
Authors: Walsh, M.E., Greenberg, L.R., Kazlauskas, R.J., Pierce, C.T., Aihara, H., Evans, R.L., Shi, K., Tan, P.
PDB entry 8snj: Crystal Structure of ArnB Transferase from Klebsiella aerogenes (Lattice Translocation Disorder, P1 form)
Classification: TRANSFERASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-04-27
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8snk: Crystal structure of metformin hydrolase (MfmAB) from Pseudomonas mendocina sp. MET-2 mutant (MfmA/D188N)
Classification: HYDROLASE
Source organism: Pseudomonas mendocina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-04-27
Authors: Tassoulas, L.J., Rankin, J.A., Elias, M.H., Wackett, L.P.
PDB entry 8snl: Structure of human ADAM17/iRhom2 sheddase complex
Classification: MEMBRANE PROTEIN/HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-04-27
Authors: Zhao, H., Dai, Y., Wang, Y., Lee, C.H.
PDB entry 8snm: Structure of mature human ADAM17/iRhom2 sheddase complex in complex with ADAM17 prodomain
Classification: MEMBRANE PROTEIN/HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2023-04-27
Authors: Zhao, H., Dai, Y., Wang, Y., Lee, C.H.
PDB entry 8snn: Structure of mature human ADAM17/iRhom2 sheddase complex, conformation 1
Classification: MEMBRANE PROTEIN/HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.32 Å
Deposited: 2023-04-27
Authors: Zhao, H., Dai, Y., Wang, Y., Lee, C.H.
PDB entry 8sno: Structure of mature human ADAM17/iRhom2 sheddase complex, conformation 2
Classification: MEMBRANE PROTEIN/HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-04-27
Authors: Zhao, H., Dai, Y., Wang, Y., Lee, C.H.
PDB entry 8snp: Crystal structure of mouse Netrin-1 in complex with samarium ions
Classification: APOPTOSIS
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-04-27
Authors: Heide, F., Legare, S., Stetefeld, J.
PDB entry 8snq: Streptococcus pyogenes Sortase A (SrtA) with the F145E mutation
Classification: HYDROLASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-04-27
Authors: Kodama, H.M., Amacher, J.F.
PDB entry 8snx: Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) bound to the leader promoter
Classification: VIRAL PROTEIN/RNA
Source organism: Respiratory syncytial virus A2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-28
Authors: Cao, D., Gao, Y., Chen, Z., Gooneratne, I., Roesler, C., Mera, C., Liang, B.
PDB entry 8sny: Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) bound to the trailer complementary promoter
Classification: VIRAL PROTEIN/RNA
Source organism: Respiratory syncytial virus A2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-04-28
Authors: Cao, D., Gao, Y., Chen, Z., Gooneratne, I., Roesler, C., Mera, C., Liang, B.
PDB entry 8snz: X-ray Crystal Structure of FMN-bound long-chain flavodoxin from Rhodopseudomonas palustris
Classification: FLAVOPROTEIN
Source organism: Rhodopseudomonas palustris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-04-28
Authors: Ansari, A., Khan, S.A., Miller, A.F.
PDB entry 8so0: Cryo-EM structure of the PP2A:B55-FAM122A complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79961 Å
Deposited: 2023-04-28
Authors: Fuller, J.R., Padi, S.K.R., Peti, W., Page, R.
PDB entry 8so1: Human CYP3A4 bound to three caffeine molecules
Classification: OXIDOREDUCTASE/SUBSTRATE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-04-28
Authors: Sevrioukova, I.F.
PDB entry 8so2: Human CYP3A4 bound to a substrate
Classification: OXIDOREDUCTASE/SUBSTRATE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-04-28
Authors: Sevrioukova, I.F.
PDB entry 8so3: CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3
Classification: IMMUNOSUPPRESSANT
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2023-04-28
Authors: Mishra, A.K., Shahid, S., Karade, S.S., Mariuzza, R.A.
PDB entry 8so5: Crystal structure of the engineered quorum quenching acylase MacQ variant M1 - acylated form
Classification: HYDROLASE
Source organism: Acidovorax sp. MR-S7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-04-28
Authors: Sompiyachoke, K., Elias, M.
PDB entry 8so8: Crystal structure of an N-terminally truncated variant of Escherichia coli RapA
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.607 Å
Deposited: 2023-04-28
Authors: Shaw, G.X., Kakar, S., Ji, X.
PDB entry 8so9: Phosphoinositide phosphate 3 kinase gamma
Classification: SIGNALING PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-04-28
Authors: Chen, C.-L., Tesmer, J.J.G.
PDB entry 8soa: Phosphoinositide phosphate 3 kinase gamma bound with ATP
Classification: SIGNALING PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-04-28
Authors: Chen, C.-L., Tesmer, J.J.G.
PDB entry 8sob: Phosphoinositide phosphate 3 kinase gamma bound with ADP
Classification: SIGNALING PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-04-28
Authors: Chen, C.-L., Tesmer, J.J.G.
PDB entry 8soc: Phosphoinositide phosphate 3 kinase gamma bound with ADP and Gbetagamma
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-04-28
Authors: Chen, C.-L., Tesmer, J.J.G.
PDB entry 8sod: Phosphoinositide phosphate 3 kinase gamma bound with ADP and two Gbetagamma subunits in State 1
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-04-28
Authors: Chen, C.-L., Tesmer, J.J.G.
PDB entry 8soe: Phosphoinositide phosphate 3 kinase gamma bound with ADP and two Gbetagamma subunits in State 2
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-04-28
Authors: Chen, C.-L., Tesmer, J.J.G.
PDB entry 8sog: Proteinase K Multiconformer Model at 313K
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2023-04-28
Authors: Du, S., Wankowicz, S., Yabukarski, F., Doukov, T., Herschlag, D., Fraser, J.S.
PDB entry 8soi: Structure of human ULK1 complex core (2:1:1 stoichiometry)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-04-28
Authors: Chen, M., Hurley, J.H.
PDB entry 8soj: Cryo-EM structure of human CST bound to POT1(ESDL)/TPP1 in the absence of telomeric ssDNA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O157:H7; Homo sapiens; Human enterovirus 71
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-04-28
Authors: Cai, S.W.
PDB entry 8sok: Cryo-EM structure of human CST bound to POT1(ESDL)/TPP1 in the presence of telomeric ssDNA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O157:H7; Homo sapiens; Human enterovirus 71; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-04-28
Authors: Cai, S.W.
PDB entry 8son: Crystal structure of macrophage migration inhibitory factor in complex with N-[3-(Trifluoromethyl)phenyl]-3-(2-chloroanilino)-2-cyano-3-thioxopropanamide
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-04-28
Authors: Pantouris, G., Lolis, E.
PDB entry 8soq: S127A variant of LarB, a carboxylase/hydrolase involved in synthesis of the cofactor for lactate racemase, in complex with authentic substrate NaAD
Classification: LYASE
Source organism: Lactiplantibacillus plantarum WCFS1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-04-29
Authors: Chatterjee, S., Rankin, J.A., Hu, J., Hausinger, R.P.
PDB entry 8sor: Structure of human PI3KC3-C1 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2023-04-29
Authors: Chen, M., Hurley, J.H.
PDB entry 8sos: Human CD1d presenting sphingomyelin C24:1 in complex with VHH nanobody 1D17
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2023-04-29
Authors: Shahine, A., Rossjohn, J.
PDB entry 8sot: Structure of the PPIase domain of borrelial BB0108
Classification: CHAPERONE
Source organism: Borreliella burgdorferi B31
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-04-30
Authors: Shakya, A.K., Herzberg, O.
PDB entry 8sou: Proteinase K Multiconformer Model at 363K
Classification: HYDROLASE
Source organism: Parengyodontium album; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-04-30
Authors: Du, S., Wankowicz, S., Yabukarski, F., Doukov, T., Herschlag, D., Fraser, J.S.
PDB entry 8sov: Proteinase K Multiconformer Model at 353K
Classification: HYDROLASE
Source organism: Parengyodontium album; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.291 Å
Deposited: 2023-04-30
Authors: Du, S., Wankowicz, S., Yabukarski, F., Doukov, T., Herschlag, D., Fraser, J.S.
PDB entry 8sow: Structure of the complex formed by human interleukin-2 and scFv F10
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-04-30
Authors: Gould, J.R., Leonard, E.K., Cao, S.D., Spangler, J.B.
PDB entry 8soy: Cryo-EM structure of Enoyl-CoA hydratase from Mycobacterium smegmatis
Classification: HYDROLASE
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-04-30
Authors: Shek, R., Quispe, J., Staker, B., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8soz: Structure of the complex formed by human interleukin-2 and scFv 602
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-04-30
Authors: Gould, J.R., Leonard, E.K., Cao, S.D., Spangler, J.B.
PDB entry 8sp0: Symmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid
Classification: IMMUNE SYSTEM
Source organism: Maribacter polysiphoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-05-01
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 8sp1: Chimeric ETS-domain of murine PU.1 harboring the corresponding beta-strand 3 (S3) residues from murine Ets-1 in complex with d(AATAAGCGIAAGTGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-05-01
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8sp2: Crystal structure of metformin hydrolase (MfmAB) from Pseudomonas mendocina sp. MET-2 apo form
Classification: HYDROLASE
Source organism: Pseudomonas mendocina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-05-01
Authors: Tassoulas, L.J., Rankin, J.A., Elias, M.H., Wackett, L.P.
PDB entry 8sp3: Asymmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid
Classification: IMMUNE SYSTEM
Source organism: Maribacter polysiphoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-05-01
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 8sp4: Crystal structure of N-terminally truncated Escherichia coli RapA in complex with ATP-gamma-S
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2023-05-02
Authors: Shaw, G.X., Kakar, S., Ji, X.
PDB entry 8sp5: LINE-1 retrotransposon endonuclease domain complex with Mn2+
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-05-02
Authors: D'Ordine, A.M., Jogl, G., Sedivy, J.M.
PDB entry 8sp6: COMPLEX STRUCTURE OF CDYL2 WITH AN ANTAGONIST
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-05-02
Authors: Song, X., Beldar, S., Dong, A., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
PDB entry 8sp7: LINE-1 retrotransposon endonuclease domain complex with tranexamic acid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-05-02
Authors: D'Ordine, A.M., Jogl, G., Sedivy, J.M.
PDB entry 8sp8: Human TRP channel TRPV6 in cNW30 nanodiscs inhibited by tetrahydrocannabivarin (THCV)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-05-02
Authors: Neuberger, A., Yelshanskaya, M.V., Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 8sp9: Crystal Structure of Coxsackievirus B3 (CVB3) Cloverleaf RNA with tRNA scaffold
Classification: RNA
Source organism: Coxsackievirus B3; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2023-05-02
Authors: Gottipati, K., McNeme, S.C., Choi, K.H.
PDB entry 8spa: Structural insights into cellular control of the human CPEB3 prion, functionally regulated by a labile-amyloid-forming segment
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-05-02
Authors: Flores, M.D., Sawaya, M.R., Boyer, D.R., Zink, S., Fioriti, L., Rodriguez, J.A.
PDB entry 8spb: Caspase-4/Pro-IL-18 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-05-02
Authors: Pascal, D., Dong, Y., Wu, H., Jon, K.
PDB entry 8spc: Crystal structure of the cytochrome P450 enzyme RufO
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces atratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.871 Å
Deposited: 2023-05-02
Authors: Dratch, B.D., Davis, K.M.
PDB entry 8spd: Cytochrome P450 (CYP) 3A4 crystallized with clotrimazole
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-05-02
Authors: Hsu, M.H., Johnson, E.F.
PDB entry 8spe: Crystal structure of Bax core domain BH3-groove dimer - tetrameric fraction P31
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-05-03
Authors: Miller, M.S., Cowan, A.D., Colman, P.M., Czabotar, P.E.
PDB entry 8spf: Crystal structure of Bax core domain BH3-groove dimer - hexameric fraction with 2-stearoyl lysoPC
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-05-03
Authors: Cowan, A.D., Miller, M.S., Czabotar, P.E., Colman, P.M.
PDB entry 8spg: Crystal structure of N-terminally truncated Escherichia coli RapA in complex with MgADP
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-05-03
Authors: Shaw, G.X., Ji, X.
PDB entry 8sph: Crystal structure of chimeric omicron RBD (strain XBB.1) complexed with human ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2023-05-03
Authors: Zhang, W., Shi, K., Aihara, H., Li, F.
PDB entry 8spi: Crystal structure of chimeric omicron RBD (strain XBB.1.5) complexed with human ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2023-05-03
Authors: Zhang, W., Shi, K., Aihara, H., Li, F.
PDB entry 8spj: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) N28T Mutant
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-05-03
Authors: Kohaal, N., Lewandowski, E.M., Wang, J., Chen, Y.
PDB entry 8spk: Crystal structure of Antarctic PET-degrading enzyme
Classification: HYDROLASE
Source organism: Moraxella
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-05-03
Authors: Furtado, A.A., Blazquez-Sanchez, P., Grinen, A., Vargas, J.A., Leonardo, D.A., Sculaccio, S.A., Pereira, H.M., Diez, B., Garratt, R.C., Ramirez-Sarmiento, C.A.
PDB entry 8spl: Proteinase K Multiconformer Model at 343K
Classification: HYDROLASE
Source organism: Parengyodontium album; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2023-05-03
Authors: Du, S., Wankowicz, S., Yabukarski, F., Doukov, T., Herschlag, D., Fraser, J.S.
PDB entry 8spm: Crystal structure of NikA in complex Ni-AMA
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-05-03
Authors: Sychantha, D., Prehna, G., Wright, G.D.
PDB entry 8spn: Crystal structure of macrophage migration inhibitory factor in complex with T614
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-05-03
Authors: Pantouris, G., Lolis, E.
PDB entry 8spo: Tetramerized activation of MapSPARTA bound with NAD+
Classification: IMMUNE SYSTEM
Source organism: Maribacter polysiphoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-05-03
Authors: Shen, Z.F., Yang, X.Y., Fu, T.M.
PDB entry 8spp: Crystal structure of a heme enzyme RufO in rufomycin biosynthesis
Classification: OXIDOREDUCTASE
Source organism: Streptomyces atratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-05-03
Authors: Wang, Y., Jordan, S., Li, B.
PDB entry 8spq: SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Classification: IMMUNE SYSTEM
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-05-03
Authors: Hibshman, G.N., Bravo, J.P.K., Taylor, D.W.
PDB entry 8spr: The cryo-EM structure of the EcBAM/EspP(beta1-12) complex
Classification: MEMBRANE PROTEIN/Hydrolase
Source organism: Escherichia coli; Escherichia coli 0.1288; Escherichia coli O157
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-05-03
Authors: Wu, R., Noinaj, N.
PDB entry 8sps: High resolution structure of ESRRB nucleosome bound OCT4 at site a and site b
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-05-03
Authors: Lian, T., Guan, R., Bai, Y.
PDB entry 8spu: Structure of ESRRB nucleosome bound OCT4 at site c
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-05-03
Authors: Lian, T., Guan, R., Bai, Y.
PDB entry 8spv: PS3 F1 Rotorless, no ATP
Classification: TRANSLOCASE
Source organism: Bacillus sp. PS3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-05-03
Authors: Sobti, M., Stewart, A.G.
PDB entry 8spw: PS3 F1 Rotorless, low ATP
Classification: TRANSLOCASE
Source organism: Bacillus sp. PS3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-05-03
Authors: Sobti, M., Stewart, A.G.
PDB entry 8spx: PS3 F1 Rotorless, high ATP
Classification: TRANSLOCASE
Source organism: Bacillus sp. PS3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-05-03
Authors: Sobti, M., Stewart, A.G.
PDB entry 8spz: Crystal structure of Bax core domain BH3-groove dimer - hexameric fraction with dioctanoyl phosphatidylserine
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-05-04
Authors: Cowan, A.D., Colman, P.M., Czabotar, P.E., Miller, M.S.
PDB entry 8sq0: Cleaved Ycf1p Dimer in the IFwide-beta conformation
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-05-04
Authors: Bickers, S.C., Benlekbir, S., Rubinstein, J.L., Kanelis, V.
PDB entry 8sq7: X-ray crystal structure of Acinetobacter baumanii beta-lactamase variant OXA-82 K83D in complex with doripenem
Classification: HYDROLASE/INHIBITOR,ANTIBIOTIC
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-05-04
Authors: Powers, R.A., Leonard, D.A., June, C.M., Szarecka, A., Wawrzak, Z.
PDB entry 8sq8: X-ray crystal structure of Acinetobacter baumanii beta-lactamase variant OXA-109 in complex with doripenem
Classification: HYDROLASE/INHIBITOR,ANTIBIOTIC
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-05-04
Authors: Powers, R.A., Leonard, D.A., June, C.M., Szarecka, A., Wawrzak, Z.
PDB entry 8sq9: SARS-CoV-2 replication-transcription complex bound to nsp9 and UMPCPP, as a pre-catalytic NMPylation intermediate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-05-04
Authors: Small, G.I., Darst, S.A., Campbell, E.A.
PDB entry 8sqa: The cryo-EM structure of the EcBAM/EspP(beta8-12) complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Escherichia coli O157
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-05-04
Authors: Wu, R., Noinaj, N.
PDB entry 8sqb: The cryo-EM structure of the EcBAM/EspP(beta7-12) complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-05-04
Authors: Wu, R., Noinaj, N.
PDB entry 8sqf: OXA-48 bound to inhibitor CDD-2725
Classification: HYDROLASE/INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-05-04
Authors: Park, S., Judge, A., Fan, J., Sankaran, B., Prasad, B.V.V., Palzkill, T.
PDB entry 8sqg: OXA-48 bound to inhibitor CDD-2801
Classification: HYDROLASE/INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-05-04
Authors: Park, S., Judge, A., Fan, J., Sankaran, B., Palzkill, T.
PDB entry 8sqh: SpRY-Cas9:gRNA complex targeting TTC PAM DNA
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2023-05-04
Authors: Hibshman, G.N., Bravo, J.P.K., Taylor, D.W.
PDB entry 8sqj: SARS-CoV-2 replication-transcription complex bound to RNA-nsp9, as a noncatalytic RNA-nsp9 binding mode
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-05-04
Authors: Small, G.I., Darst, S.A., Campbell, E.A.
PDB entry 8sqk: SARS-CoV-2 replication-transcription complex bound to RNA-nsp9 and GDP-betaS, as a pre-catalytic deRNAylation/mRNA capping intermediate
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-05-04
Authors: Small, G.I., Darst, S.A., Campbell, E.A.
PDB entry 8sql: Cleaved Ycf1p Monomer in the Beta Conformation
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-05-04
Authors: Bickers, S.C., Benlekbir, S., Rubinstein, J.L., Kanelis, V.
PDB entry 8sqm: Cleaved Ycf1p Monomer in the IFwide-alpha conformation
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-05-04
Authors: Bickers, S.C., Benlekbir, S., Rubinstein, J.L., Kanelis, V.
PDB entry 8sqn: CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Classification: VIRAL PROTEIN/SIGNALING PROTEIN
Source organism: Anas platyrhynchos; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2023-05-04
Authors: Zimmerman, M.I., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8sqo: Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (magnesium bound, F16L mutant)
Classification: METAL BINDING PROTEIN
Source organism: Brucella abortus 2308
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-05-04
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8sqp: Crystal Structure of Bacterioferritin (Bfr) from Brucella abortus (Apo, F16L mutant)
Classification: METAL BINDING PROTEIN
Source organism: Brucella abortus 2308
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-05-04
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)