LiteFold/PDB huggingface dataset:
PDB entry 9r71: Crystal structure of E. coli Adenylate kinase E114A mutant in complex with inhibitor Ap5a.
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-05-13
Authors: Mattsson, J., Rogne, P., Wolf-Watz, M., Sauer-Eriksson, A.E.
PDB entry 9r72: Crystal structure of Odinarchaeota Adenylate kinase (OdinAK) S74G mutant
Classification: TRANSFERASE
Source organism: Candidatus Odinarchaeum yellowstonii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.58 Å
Deposited: 2025-05-13
Authors: Rodriguez Buitrago, J.A., Schierholz, L., Mattsson, J., Wolf-Watz, M., Sauer-Eriksson, A.E.
PDB entry 9r73: Pyrin B30.2 domain, FMF mutation delta-Ile692
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-05-13
Authors: Mittl, P., Possner, D.
PDB entry 9r74: Pyrin B30.2 domain, FMF mutation I641F
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-05-13
Authors: Mittl, P., Possner, D.
PDB entry 9r75: Transcription initiation T. thermophilus RNA polymerase complex with anti-scrunched TC DNA template
Classification: TRANSCRIPTION
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-05-13
Authors: Skerlova, J., Dubankova, A., Svachova, H., Kouba, T.
PDB entry 9r76: Imine Reductase IR91 from Kribbella flavida with NADP+
Classification: OXIDOREDUCTASE
Source organism: Kribbella flavida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2025-05-14
Authors: Sharma, M., Grogan, G.
PDB entry 9r78: Human Adenovirus D 10 Capsid Structure
Classification: VIRUS
Source organism: Human adenovirus D10
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-14
Authors: Waraich, K., Mundy, R.M., Bates, E.A., da Fonseca, P., Morris, E., Rizkallah, P.J., Baker, A.T., Young, M.T., Parker, A.L., Bhella, D.
PDB entry 9r79: Imine Reductase IR91 from Kribbella flavida with NADP+ and 5-methoxy-2-tetralone
Classification: OXIDOREDUCTASE
Source organism: Kribbella flavida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-05-14
Authors: Srinivas, K., Gilio, A.K., Grogan, G.
PDB entry 9r7a: Imine Reductase IR91 from Kribbella flavida with NADP+ and 5-methoxy-(S)-2-(N-methylamino)tetralin
Classification: OXIDOREDUCTASE
Source organism: Kribbella flavida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-05-14
Authors: Srinivas, K., Gilio, A.K., Grogan, G.
PDB entry 9r7b: Structure and mechanism of the broad spectrum CRISPR-associated ring nuclease Crn4
Classification: VIRAL PROTEIN
Source organism: Hyphomicrobiales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2025-05-14
Authors: McMahon, S.A., White, M.F., Gloster, T.M.
PDB entry 9r7e: Cryo-EM Structure of catalytic amyloids
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2025-05-14
Authors: Shahar, A., Zalk, R., Arad, E.
PDB entry 9r7f: De novo designed enzyme for the Morita-Baylis-Hillman reaction (MBH48)
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-05-14
Authors: Tripp, A., Fischer, C., Moser, M., Oberdorfer, G.
PDB entry 9r7j: Repair of Iron Centre (RIC) protein from Staphylococcus aureus
Classification: METAL BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2025-05-14
Authors: Romao, C.V., Matias, P.M., Saraiva, L.M.
PDB entry 9r7o: DhhP of Borrelia burgdorferi in complex with AMP
Classification: HYDROLASE
Source organism: Borreliella burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-05-15
Authors: Klima, M., Boura, E.
PDB entry 9r7q: Paranemic crossover triangle (PXT) with 2'-Fluoro-modified pyrimidines (FY RNA)
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.41 Å
Deposited: 2025-05-15
Authors: Kristoffersen, E.L., Andersen, E.S., Zwergius, N.H.
PDB entry 9r7r: Potato virus A (PVA)
Classification: VIRUS
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r7s: Potato virus A (PVA) after incubation in solution at 4C for 6 months
Classification: VIRUS
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r7t: ssRNA-containing helical virus-like particle composed of PVA (isolate B11) coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r7u: RNA-free helical (h8.5) virus-like particle composed of PVA (isolate B11) coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r7v: ssRNA-containing helical virus-like particle composed of PVA (isolate Datura) coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r7w: 5-Helix Tile - Twist Corrected (5HT-TC) with 2'-Fluoro-modified pyrimidines (FY RNA)
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.06 Å
Deposited: 2025-05-15
Authors: Kristoffersen, E.L., Andersen, E.S., Zwergius, N.H.
PDB entry 9r7x: RNA-free helical (h8.5) virus-like particle composed of PVA (isolate Datura) coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r7y: RNA-free helical (h9.7) virus-like particle composed of PVA coat protein with 6 mutations (H89Q, E90S, S144E, R163A, K180E, and T210R)
Classification: VIRUS LIKE PARTICLE
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r7z: RNA-free helical (h10.7) virus-like particle composed of PVA coat protein with 6 mutations (H89Q, E90S, S144E, R163A, K180E, and T210R)
Classification: VIRUS LIKE PARTICLE
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r80: RNA-free stacked-ring (r10) virus-like particle composed of PVA coat protein with 6 mutations (H89Q, E90S, S144E, R163A, K180E, and T210R)
Classification: VIRUS LIKE PARTICLE
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r81: ssRNA-containing helical virus-like particle composed of PVA coat protein with D138C mutation
Classification: VIRUS LIKE PARTICLE
Source organism: Potato virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2025-05-15
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r82: 6-Helix Bundle - with a Clasp (6HB-C)-monomer with 2'-Fluoro-modified pyrimidines (FY RNA)
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.33 Å
Deposited: 2025-05-15
Authors: Kristoffersen, E.L., Andersen, E.S., Zwergius, N.H.
PDB entry 9r84: The C103F Mutant of Apo-C-Terminal Domain Homolog of the Orange Carotenoid Protein (CTDH) from Anabaena
Classification: PHOTOSYNTHESIS
Source organism: Cyanobacteriota
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-05-15
Authors: Sklyar, J., Adir, N.
PDB entry 9r85: Cryo-EM structure of the E3 ligase HECTD3 conjugated to ubiquitin
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-05-15
Authors: Esposito, D., Huber, J., Maslen, S., Rittinger, K.
PDB entry 9r86: Major Vault Protein from Human Brain
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-05-15
Authors: Lovestam, S.L., Scheres, S.H.W.
PDB entry 9r87: Cap of the vault protein from Human Brain
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-05-15
Authors: Lovestam, S.L., Scheres, S.H.W.
PDB entry 9r8b: CRYSTAL STRUCTURE OF WILD-TYPE PLK1 KINASE DOMAIN IN COMPLEX WITH THIAZOLIDINONE INHIBITOR COMPOUND 1 AND A SELECTIVE DARPIN
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-05-16
Authors: Hillig, R.C., Matias, P.M., Bandeiras, T.M., Siemeister, G., Schulze, V.K., Schmitz, A.A., Eberspaecher, U.
PDB entry 9r8c: CRYSTAL STRUCTURE OF WILD-TYPE PLK1 KINASE DOMAIN IN COMPLEX WITH THIAZOLIDINONE INHIBITOR COMPOUND 1 AND A SELECTIVE DARPIN
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.243 Å
Deposited: 2025-05-16
Authors: Hillig, R.C., Matias, P.M., Bandeiras, T.M., Schulze, V.K., Siemeister, G., Schmitz, A.A., Eberspaecher, U., Bomer, U.
PDB entry 9r8f: CTX-M-14 complexes with 3D Boron Heterocycles synthetized via EnT Catalysis
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-05-16
Authors: Perbandt, M., Molloy, J.J., Oberthuer, D.
PDB entry 9r8g: Pseudomonas putida Pore-Forming Toxin Tke5 in complex with its cognate Type VI adaptor protein Tap3
Classification: TOXIN
Source organism: Pseudomonas putida KT2440
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-05-16
Authors: Velazquez, C., Zabala-Zearreta, M., Altuna-Alvarez, J., Albesa-Jove, D.
PDB entry 9r8i: sucrose hydrolase SuxB from Xanthomonas oryzae pv. oryzae
Classification: HYDROLASE
Source organism: Xanthomonas oryzae pv. oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-05-16
Authors: Zoellner, N., Applegate, V., Smits, S.H.J., Hoeppner, A.
PDB entry 9r8o: Primed-state RyR1 in 0.05% POPC micelles, in complex with a nanobody and FKBP
Classification: TRANSPORT PROTEIN
Source organism: Lama glama; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-16
Authors: Li, C., Efremov, R.G.
PDB entry 9r8q: Structure of thrombin bound to BAY 3389934
Classification: HYDROLASE
Source organism: Hirudo medicinalis; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-05-16
Authors: Beck, H., Schaefer, M., O'Donnell, J.P.
PDB entry 9r8r: Factor Xa bound to BAY 3389934
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-05-16
Authors: Beck, H., Schaefer, M., O'Donnell, J.P.
PDB entry 9r8s: A viral SAVED protein with ring nuclease activity subverts type III CRISPR defence
Classification: VIRAL PROTEIN
Source organism: Thermocrinis Great Boiling Spring virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-05-16
Authors: McMahon, S.A., White, M.F., Orzechowski, M., Hoikkala, V., Chi, H., Gloster, T.M.
PDB entry 9r8t: Cryo-EM structure of the E3 ligase HECTD3
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.06 Å
Deposited: 2025-05-16
Authors: Esposito, D., Huber, J., Maslen, S., Rittinger, K.
PDB entry 9r8u: Flag-tag LASV spike acidified to pH 5.0 and re-equilibrated to pH 8.0
Classification: VIRAL PROTEIN
Source organism: Lassa virus Josiah
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-16
Authors: Katz, M., Diskin, R.
PDB entry 9r8x: Three dimensional structure of human carbonic anhydrase IX in complex with sulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-05-18
Authors: Leitans, J., Tars, K.
PDB entry 9r8y: Three dimensional structure of human carbonic anhydrase IX in complex with sulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-05-18
Authors: Leitans, J., Tars, K.
PDB entry 9r90: Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-05-18
Authors: Verstraete, K., Verschueren, K., Savvides, S.N., Steinberg, G.R.
PDB entry 9r94: Cryo-EM structure of the E3 ligase HECTD3
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.38 Å
Deposited: 2025-05-19
Authors: Esposito, D., Huber, J., Maslen, S., Rittinger, K.
PDB entry 9r95: Cryo-EM structure of the human mitochondrial RNA polymerase transcription initiation complex (POLRMT/TFAM/TFB2M/DNA/RNA) with a slipped 3-mer RNA, pppGpGpA (slipped IC3)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-05-19
Authors: Goovaerts, Q., Shen, J., Ajjugal, Y., De Wijngaert, B., Patel, S.S., Das, K.
PDB entry 9r96: Cryo-EM structure of the human mitochondrial RNA polymerase transcription initiation complex (POLRMT/TFAM/TFB2M/DNA/RNA) with a slipped 3-mer RNA (pppGpGpA) and GTP poised for catalysis (slipped pre-IC4)
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-05-19
Authors: Goovaerts, Q., Shen, J., Ajjugal, Y., De Wijngaert, B., Patel, S.S., Das, K.
PDB entry 9r97: DhhP of Borrelia burgdorferi in complex with AMP (SAD/Mn)
Classification: HYDROLASE
Source organism: Borreliella burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2025-05-19
Authors: Klima, M., Boura, E.
PDB entry 9r98: DhhP of Borrelia burgdorferi in complex with AMP (SAD/Fe)
Classification: HYDROLASE
Source organism: Borreliella burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2025-05-19
Authors: Klima, M., Boura, E.
PDB entry 9r99: DhhP of Borrelia burgdorferi in complex with MD1252
Classification: HYDROLASE
Source organism: Borreliella burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-05-19
Authors: Klima, M., Boura, E.
PDB entry 9r9a: CryoEM structure of a membrane protein associated with a contractile injection in Salmonella enterica subspecies salamae
Classification: MEMBRANE PROTEIN
Source organism: Salmonella enterica subsp. salamae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-05-19
Authors: Ejaz, R.N., Tillmann, H.P., Taylor, N.M.I., Siborova, M., Sofos, N.H.
PDB entry 9r9b: Crystal structure of clathrin heavy chain in complex with a peptidomimetic inhibitor of the TACC3 interaction
Classification: CELL CYCLE
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.146 Å
Deposited: 2025-05-19
Authors: Bayliss, R., Gunning, V.
PDB entry 9r9d: Recombinant human butyrylcholinesterase in complex with N-(2-methoxyethyl)-N-{[1-(prop-2-yn-1-yl)pyrrolidin-3-yl]methyl}naphthalene-2-carboxamide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-05-20
Authors: Brazzolotto, X., Kosak, U., Nachon, F., Gobec, S.
PDB entry 9r9e: Recombinant human butyrylcholinesterase in complex with N-(3-methoxypropyl)-N-{[1-(prop-2-yn-1-yl)pyrrolidin-3-yl]methyl}naphthalene-2-sulfonamide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2025-05-20
Authors: Brazzolotto, X., Kosak, U., Nachon, F., Gobec, S.
PDB entry 9r9g: IRAK4 in complex with inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-05-20
Authors: Xue, Y., Terstiege, I., Aagaard, A.
PDB entry 9r9h: Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath and inner tube module in extended state.
Classification: CONTRACTILE PROTEIN
Source organism: Salmonella enterica subsp. salamae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2025-05-20
Authors: Ejaz, R.N., Tillmann, H.P., Sofos, N.H., Siborova, M., Taylor, N.M.I.
PDB entry 9r9i: Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath in contracted state.
Classification: CONTRACTILE PROTEIN
Source organism: Salmonella enterica subsp. salamae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-05-20
Authors: Ejaz, R.N., Tillmann, H.P., Taylor, N.M.I., Siborova, M., Sofos, N.H.
PDB entry 9r9j: IRAK4 in complex with inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-05-20
Authors: Xue, Y., Terstiege, I., Aagaard, A.
PDB entry 9r9k: IRAK4 in complex with inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-05-20
Authors: Xue, Y., Terstiege, I., Aagaard, A.
PDB entry 9r9l: sucrose hydrolase SuxB from Xanthomonas oryzae pv. oryzae in complex with glucose
Classification: HYDROLASE
Source organism: Xanthomonas oryzae pv. oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2025-05-20
Authors: Zoellner, N., Applegate, V., Smits, S.H.J., Hoeppner, A.
PDB entry 9r9n: Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the cap portion in extended state.
Classification: CONTRACTILE PROTEIN
Source organism: Salmonella enterica subsp. salamae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-05-20
Authors: Ejaz, R.N., Tillmann, H.P., Sofos, N.H., Siborova, M., Taylor, N.M.I.
PDB entry 9r9o: Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-05-20
Authors: Grundmann, L., Zhang, Y., Grishkovskaya, I., Rospert, S., Haselbach, D.
PDB entry 9r9p: Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-05-20
Authors: Grundmann, L., Zhang, Y., Grishkovskaya, I., Rospert, S., Haselbach, D.
PDB entry 9r9w: RNA-free helical (h8.5) virus-like particle composed of TEV coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Tobacco etch virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-05-20
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r9x: ssRNA-containing helical virus-like particle composed of PepMoV coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Pepper mottle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2025-05-20
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r9y: RNA-free stacked-ring (r9) virus-like particle composed of PepMoV coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Pepper mottle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.32 Å
Deposited: 2025-05-20
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9r9z: ssRNA-containing helical virus-like particle composed of JGMV coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Johnsongrass mosaic virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-05-20
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9ra0: RNA-free helical (h8.6) virus-like particle composed of JGMV coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Johnsongrass mosaic virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.44 Å
Deposited: 2025-05-20
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9ra1: RNA-free helical (h9.6) virus-like particle composed of JGMV coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Johnsongrass mosaic virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2025-05-20
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9ra2: RNA-free stacked-ring (r9) virus-like particle composed of JGMV coat protein
Classification: VIRUS LIKE PARTICLE
Source organism: Johnsongrass mosaic virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-05-20
Authors: Koritnik, N., Kezar, A., Podobnik, M.
PDB entry 9rad: PhiC31 integrase-attL complex: B-bound subregion
Classification: DNA BINDING PROTEIN
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-05-20
Authors: Spagnolo, L., Sun, Y.E.
PDB entry 9rae: PhiC31 integrase-attL complex: P'-bound subregion
Classification: DNA BINDING PROTEIN
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2025-05-20
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9raf: Influenza A/H7N9 polymerase in complex with a 70-mer template in stalled elongation with backtracking and stem.
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9)); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.15 Å
Deposited: 2025-05-20
Authors: Arragain, B., Cusack, S.
PDB entry 9rag: Influenza A/H7N9 polymerase in complex with a 70-mer RNA template, in stalled elongation.
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9)); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å
Deposited: 2025-05-20
Authors: Arragain, B., Cusack, S.
PDB entry 9rah: Autoinhibited PhiC31 integrase-attL complex
Classification: DNA BINDING PROTEIN
Source organism: Lomovskayavirus C31; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.37 Å
Deposited: 2025-05-20
Authors: Sun, Y.E., Spagnolo, L.
PDB entry 9rai: Structure of the S.aureus MecA/ClpC/ClpP degradation system
Classification: CHAPERONE
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-05-20
Authors: Azinas, S., Wallden, K., Katikaridis, P., Schahl, A., Mogk, A., Carroni, M.
PDB entry 9raj: Class A CTX-M-14 E166A mutant in complex with Dicloxacillin at room temperature
Classification: PROTEIN BINDING
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-05-21
Authors: Gore, G., Schulz, E.C.
PDB entry 9ran: Structural characterization of a galactose-binding site in human RNase2
Classification: PROTEIN BINDING
Source organism: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2025-05-21
Authors: Xincheng, K., Jiarui, L., Prats-Ejarque, G., Boix, E.
PDB entry 9rao: Class A CTX-M-14 E166A mutant in complex with Cloxacillin at room temperature
Classification: PROTEIN BINDING
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-05-21
Authors: Gore, G., Schulz, E.C.
PDB entry 9rap: VDR complex with UG-635
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-05-21
Authors: Rochel, N.
PDB entry 9ras: Streptococcus pyogenes GapN in complex with imidazoline-2,4-dione
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-05-21
Authors: Wirsing, R., Schindelin, H.
PDB entry 9rat: EFFECTS OF TEMPERATURE ON PROTEIN STRUCTURE AND DYNAMICS: X-RAY CRYSTALLOGRAPHIC STUDIES OF THE PROTEIN RIBONUCLEASE-A AT NINE DIFFERENT TEMPERATURES FROM 98 TO 320 K
Classification: HYDROLASE (NUCLEIC ACID,RNA)
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 1991-08-13
Authors: Tilton Jr., R.F., Dewan, J.C., Petsko, G.A., Gilbert, W.
PDB entry 9rau: Streptococcus pyogenes GapN in complex with pyrimidine-5-amine
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-05-21
Authors: Wirsing, R., Schindelin, H.
PDB entry 9rav: Streptococcus pyogenes GapN in complex with 4-hydroxypyridazine
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-21
Authors: Wirsing, R., Schindelin, H.
PDB entry 9raw: The L1 amyloid-beta(1-40)fibril in the presence of anle138b (post-treatment)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-05-21
Authors: Frieg, B., Han, M., Griesinger, C., Schroeder, G.F.
PDB entry 9rax: The L1 amyloid-beta(1-40)fibril in the presence of anle138b (pre-treatment)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-05-21
Authors: Frieg, B., Han, M., Griesinger, C., Schroeder, G.F.
PDB entry 9ray: Crystal structure of human carbonic anhydrase I in complex with N-benzyl-2-(2-chloro-N-(3-chloro-4-methoxyphenyl)acetamido)-2-(4-sulfamoylphenyl)acetamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2025-05-21
Authors: Angeli, A., Ferraroni, M.
PDB entry 9raz: Streptococcus pyogenes GapN in complex with NADP and glyceraldehyde-3-phosphate
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2025-05-21
Authors: Wirsing, R., Schindelin, H.
PDB entry 9rb1: Streptococcus pyogenes GapN in complex with 2-cyanoacetamide
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-05-21
Authors: Wirsing, R., Schindelin, H.
PDB entry 9rb2: Crystal Structure of glxR
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2025-05-21
Authors: Parkhill, S., little, O., Wang, M., Askenasy, I., Brear, P., Cai, W., Welch, M.
PDB entry 9rb3: A53T alpha-synuclein fibril - Type 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-05-21
Authors: So, R.W.L., Frieg, B., Schroeder, G.F., Watts, J.C.
PDB entry 9rb5: Staphylokinase SY155
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus
Experimental method: SOLUTION NMR
Deposited: 2025-05-21
Authors: Legrand, A., Kaderavek, P., Zidek, L., Marek, M., Prokop, Z., Damborsky, J.
PDB entry 9rb6: A53T alpha-synuclein fibril - Type 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-05-21
Authors: So, R.W.L., Frieg, B., Schroeder, G.F., Watts, J.C.
PDB entry 9rb7: Wild-type alpha-synuclein fibril - Type 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-05-21
Authors: So, R.W.L., Frieg, B., Schroeder, G.F., Watts, J.C.
PDB entry 9rb8: Wild-type alpha-synuclein fibril - Type 3-1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2025-05-21
Authors: So, R.W.L., Frieg, B., Schroeder, G.F., Watts, J.C.
PDB entry 9rb9: Wild-type alpha-synuclein fibril - Type 3-2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-05-21
Authors: So, R.W.L., Frieg, B., Schroeder, G.F., Watts, J.C.
PDB entry 9rba: Wild-type alpha-synuclein fibril - Type 4
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2025-05-21
Authors: So, R.W.L., Frieg, B., Schroeder, G.F., Watts, J.C.
PDB entry 9rbb: Wild-type alpha-synuclein fibril - Type 5
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-05-21
Authors: So, R.W.L., Frieg, B., Schroeder, G.F., Watts, J.C.
PDB entry 9rbd: Cryo-EM structure of ANP amyloids from left atrial appendage of atrial fibrillation patient - polymorph A
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-05-22
Authors: Broggini, L., Chaves-Sanjuan, A., Ricagno, S.
PDB entry 9rbg: X-ray structure of decavanadate/lysozyme adduct obtained when the protein is treated with Cs2[V(V)2O4(mal)2]2H2O (structure A)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2025-05-26
Authors: Paolillo, M., Ferraro, G., Merlino, A.
PDB entry 9rbq: Semliki Forest virus trimer 1 in complex with ApoER2 LA5
Classification: VIRUS
Source organism: Homo sapiens; Mus musculus; Semliki Forest virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-05-27
Authors: Song, X., Du, B., Yang, D., Wang, J., Huiskonen, J.T.
PDB entry 9rbr: Semliki Forest virus trimer 2 in complex with ApoER2 LA5
Classification: VIRUS
Source organism: Semliki Forest virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-05-27
Authors: Song, X., Du, B., Yang, D., Wang, J., Huiskonen, J.T.
PDB entry 9rbt: X-ray structure of decavanadate/lysozyme adduct obtained when the protein is treated with Cs2[V(V)2O4(mal)2]2H2O (structure B)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2025-05-27
Authors: Paolillo, M., Ferraro, G., Merlino, A.
PDB entry 9rbv: X-ray structure of lysozyme when is treated with Cs2[V(V)2O4(mal)2]2H2O at 310K
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2025-05-27
Authors: Paolillo, M., Ferraro, G., Merlino, A.
PDB entry 9rbw: Cryo-EM structure of ANP amyloids from left atrial appendage of atrial fibrillation patient - polymorph B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-27
Authors: Broggini, L., Chaves-Sanjuan, A., Ricagno, S.
PDB entry 9rbz: DvhD, HD-GYP domain, c-di-GMP-bound
Classification: SIGNALING PROTEIN
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-05-27
Authors: Font, M.E., Sondermann, H.
PDB entry 9rc0: DvhD, PAS/HD-GYP domains
Classification: SIGNALING PROTEIN
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 3.44 Å
Deposited: 2025-05-27
Authors: Font, M.E., Sondermann, H.
PDB entry 9rc2: DvhD, periplasmic domain
Classification: SIGNALING PROTEIN
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-05-27
Authors: Font, M.E., Sondermann, H.
PDB entry 9rc3: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 co-crystallized with Silver Nitrate
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-05-27
Authors: Paredes, F., Casino, P.
PDB entry 9rc4: Crystal structure of VirJ domain 1 from Brucella
Classification: TRANSFERASE
Source organism: Brucella abortus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-05-27
Authors: Dugelay, C., Ferrarin, S., Terradot, L.
PDB entry 9rc5: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 mutant E451L co-crystallized with Silver Nitrate (1 molecule in assymetric unit)
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-05-27
Authors: Paredes, F., Casino, P.
PDB entry 9rc6: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 mutant Y471L co-crystallized with Copper Chloride
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-05-27
Authors: Paredes, F., Casino, P.
PDB entry 9rc7: Crystal structure of Gilliamella bombicola lactate deydrogenase (GbLDH)
Classification: OXIDOREDUCTASE
Source organism: Gilliamella bombicola
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-05-27
Authors: Rozeboom, H.J., Fraaije, M.W.
PDB entry 9rc8: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 deletion 482-509 co-crystallized with Copper Chloride
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-05-27
Authors: Paredes, F., Casino, P.
PDB entry 9rcb: Unsheathed flagellar filament in Vibrio alginolyticus
Classification: STRUCTURAL PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-05-27
Authors: Qin, K., Einenkel, R., Zhao, W., Erhardt, M., Bergeron, J.R.C.
PDB entry 9rcc: PrPfr hybrid state of the Pseudomonas aeruginosa bacteriophytochrome / PaBphP
Classification: CYTOSOLIC PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-05-27
Authors: Bodizs, S., Westenhoff, S.
PDB entry 9rcd: Sheathed flagellar filament in Vibrio alginolyticus
Classification: STRUCTURAL PROTEIN
Source organism: Vibrio alginolyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-05-27
Authors: Qin, K., Einenkel, R., Erhardt, M., Bergeron, J.R.C.
PDB entry 9rce: Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the baseplate portion in extended state.
Classification: CONTRACTILE PROTEIN
Source organism: Salmonella enterica subsp. salamae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-05-28
Authors: Ejaz, R.N., Tillmann, H.P., Sofos, N.H., Siborova, M., Taylor, N.M.I.
PDB entry 9rcg: Vitamin D receptor complex with a vitamin D receptor agonist/histone deacetylase inhibitor hybrid molecule
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-05-28
Authors: Rochel, N.
PDB entry 9rci: Crystal Structure of Flap Endonuclease FEN1 with Compound 28
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.662 Å
Deposited: 2025-05-29
Authors: Toste Rego, A., Pica, A., Cornaciu, I., Burgdorf, L., Mann, S.E.
PDB entry 9rcj: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 mutant M455A-M456A soaked with Copper 20 seconds
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-05-29
Authors: Paredes, F., Casino, P.
PDB entry 9rck: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 mutant M455A-M456A soaked with Copper 2 minutes
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus 4618
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-05-29
Authors: Paredes, F., Casino, P.
PDB entry 9rcl: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 mutant M455A-M456A soaked with Copper 10 minutes
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus 4618
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-05-29
Authors: Paredes, F., Casino, P.
PDB entry 9rcm: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 mutant E451L co-crystallized with Copper Chloride
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-05-29
Authors: Paredes, F., Casino, P.
PDB entry 9rcn: Laccase (multicopper oxidase) from Pediococcus pentosaceus 4618 mutant E451L co-crystallized with Silver Nitrate (2 molecules in assymetric unit)
Classification: OXIDOREDUCTASE
Source organism: Pediococcus pentosaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-05-29
Authors: Paredes, F., Casino, P.
PDB entry 9rco: 1,2-propanediol dehydratase with 0.1 % glycerol additive
Classification: LYASE
Source organism: Raoultella planticola
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-05-29
Authors: Kalnins, G., Estere, M.
PDB entry 9rcp: 1,2-propanediol dehydratase with 0.1 % 1,3-propanediol additive
Classification: LYASE
Source organism: Raoultella planticola
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-05-29
Authors: Kalnins, G., Estere, M.
PDB entry 9rcq: 1,2-propanediol dehydratase with no ligand additives
Classification: LYASE
Source organism: Raoultella planticola
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-05-29
Authors: Kalnins, G., Estere, M.
PDB entry 9rcr: 1,2-propanediol dehydratase with 0.1 % 1,2-propanediol additive
Classification: LYASE
Source organism: Raoultella planticola
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-05-29
Authors: Kalnins, G., Estere, M.
PDB entry 9rcs: Cardioderma bat coronavirus KY43 receptor binding domain in complex with human CEACAM6
Classification: VIRAL PROTEIN
Source organism: Cardioderma bat coronavirus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.012 Å
Deposited: 2025-05-29
Authors: Gallo, G., Bailey, D., Graham, S.C.
PDB entry 9rcu: Cardioderma bat coronavirus 2B receptor binding domain in complex with human CEACAM6
Classification: VIRAL PROTEIN
Source organism: Cardioderma bat coronavirus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2025-05-29
Authors: Gallo, G., Bailey, D., Graham, S.C.
PDB entry 9rcv: Structure of the Human Peptide-Loading Complex Arrested by HCMV US6
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-05-29
Authors: Stolz, M., Susac, L., Trowitzsch, S., Tampe, R.
PDB entry 9rcw: Primed-state RyR1 in 0.01% POPC micelles, in complex with a nanobody and FKBP12
Classification: TRANSPORT PROTEIN
Source organism: Lama glama; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-30
Authors: Li, C., Efremov, R.G.
PDB entry 9rcx: Structure of protein kinase CK2alpha mutant T127M associated with the Okur-Chung Neurodevelopmental Syndrome
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-05-30
Authors: Werner, C., Gast, A., Jose, J., Niefind, K.
PDB entry 9rcy: Structure of protein kinase CK2alpha mutant R21Q associated with the Okur-Chung Neurodevelopmental Syndrome
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-05-30
Authors: Werner, C., Gast, A., Jose, J., Niefind, K.
PDB entry 9rcz: Structure of the N-terminal domain of non-structural protein 1 (Nsp1) from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-05-30
Authors: Lennartz, F., Weiss, M.S.
PDB entry 9rd0: Structure of DabA2B2 complex solved under ambient condition
Classification: TRANSPORT PROTEIN
Source organism: Halothiobacillus neapolitanus c2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-05-30
Authors: Lo, Y.K., Bohn, S., Schuller, J.
PDB entry 9rd1: OppA from E. coli in complex with GSisoK
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-05-30
Authors: Iype, T., Fottner, M., Boehm, P., Piedrafita, C., Moeller, Y., Groll, M., Lang, K.
PDB entry 9rd5: Phi3T SroF bound to DNA
Classification: DNA BINDING PROTEIN
Source organism: Bacillus phage phi3T; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-06-01
Authors: Zamora-Caballero, S., Marina, A.
PDB entry 9rd8: Structure of DabA2B2 complex under 0.1M bicarbonate
Classification: TRANSPORT PROTEIN
Source organism: Halothiobacillus neapolitanus c2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-06-02
Authors: Lo, Y.K., Bohn, S., Schuller, J.
PDB entry 9rd9: Structure of DabA2B2 complex under 17 mM CO2
Classification: TRANSPORT PROTEIN
Source organism: Halothiobacillus neapolitanus c2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-02
Authors: Lo, Y.K., Bohn, S., Schuller, J.
PDB entry 9rda: Cocrystal structure of Zilurgisertib bound to the ALK2-FKBP12 complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.748 Å
Deposited: 2025-06-02
Authors: Dekker, C.
PDB entry 9rdc: Crystal structure of Phytophthora infestans effector AVRcap1b in complex with the ENTH domain of Nicotiana benthamiana NbTOL9a protein
Classification: PROTEIN BINDING
Source organism: Nicotiana benthamiana; Phytophthora infestans
Experimental method: X-RAY DIFFRACTION
Resolution: 4.1 Å
Deposited: 2025-06-02
Authors: Contreras, M.P., Madhuprakash, J., Lawson, D.M., Kamoun, S.
PDB entry 9rdd: Nicotinic Acid N-glucoside Reductase NaGR (A622) in complex with NADP+ and Nicotinic Acid N-glucoside
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2025-06-02
Authors: Schwabe, B.T.W., Ingold, Z., Lichman, B.R., Grogan, G.
PDB entry 9rde: Crystal structure of the B. licheniformis bacitacin sythetase 3 cis-E-COM-C domains
Classification: PEPTIDE BINDING PROTEIN
Source organism: Bacillus licheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2025-06-02
Authors: Rasche, R., Diecker, J., Rueschenbaum, J., Mootz, H.D., Kuemmel, D.
PDB entry 9rdf: Liver Pyruvate kinase in complex with a phthalazine-based fluorescent probe IV
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-06-02
Authors: Nilssson, O., Brear, P., Grotli, M., Hyvonen, M.
PDB entry 9rdh: Structure of A16/G9 in complex with A56/K2 at pH 5.5 (vaccinia virus)
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus Western Reserve
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-06-02
Authors: Vernuccio, R., Battini, L., Meola, A., Guardado-Calvo, P.
PDB entry 9rdi: Crystal Structure of Flap Endonuclease FEN1 with Compound 5
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.105 Å
Deposited: 2025-06-02
Authors: Toste Rego, A., Pica, A., Cornaciu, I., Burgdorf, L., Mann, S.E.
PDB entry 9rdk: Cryo-EM structure of the human SAGA co-activator complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2025-06-03
Authors: Damilot, M., Ben-Shem, A., Papai, G.
PDB entry 9rdr: Nicotine Glucoside Synthase (BBL) in complex with FAD and Nicotine Glucoside
Classification: OXIDOREDUCTASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2025-06-03
Authors: Schwabe, B.T.W., Lichman, B.R., Grogan, G.
PDB entry 9rds: Protein with novel 3_1 knotted solenoid fold
Classification: UNKNOWN FUNCTION
Source organism: Brevundimonas sp. G8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2025-06-03
Authors: Mozajew, M., Kluza, A., Sikorska, J., Sulkowska, J.I.
PDB entry 9rdt: Structure of the RhGB07 Prefusion, Closed-state trimeric spike protein
Classification: VIRAL PROTEIN
Source organism: Sarbecovirus sp. RhGB07
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-06-03
Authors: Lau, K., Dong, C.N., Ekundayo, B.
PDB entry 9rdu: Crystal structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F001
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-06-03
Authors: Mueller, J., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9rdv: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F005
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-06-03
Authors: Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9rdw: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F009
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-06-03
Authors: Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9rdx: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F012
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-06-03
Authors: Merkl, S., Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9rdy: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F024
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-06-03
Authors: Merkl, S., Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9rdz: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F030
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2025-06-03
Authors: Metz, A., Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9re0: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F032
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-06-03
Authors: Metz, A., Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9re1: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F055
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-06-03
Authors: Metz, A., Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9re2: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F058
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-06-03
Authors: Ruf, M., Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9re3: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F070
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-06-03
Authors: Ruf, M., Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.
PDB entry 9re4: Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus griseus in complex with F073
Classification: TRANSFERASE
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-06-03
Authors: Ruf, M., Mueller, J.M., Wolter, M., Glinca, S., Klebe, G.