LiteFold/PDB huggingface dataset:
PDB entry 9ca0: Human TOP3B-TDRD3 core complex in DNA post-cleavage state
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2024-06-16
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9ca1: Human TOP3B-TDRD3 core complex in DNA religation state
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-06-16
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9ca2: ENGINEERING THE HYDROPHOBIC POCKET OF CARBONIC ANHYDRASE II
Classification: LYASE(OXO-ACID)
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1991-07-09
Authors: Alexander, R.S., Christianson, D.W.
PDB entry 9ca3: Crystal structure of MarE C280S in complex with cyanide bound heme and its native substrate, beta-methyl-L-tryptophan
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. B9173
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-06-16
Authors: Shin, I., Liu, A.
PDB entry 9ca4: Human TOP3B-TDRD3 core complex in RNA rejoining state
Classification: ISOMERASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-06-16
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9ca5: Rns pocket mutant - H20A
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-06-17
Authors: Tolbert, J.D., Midget, C.R., Kull, F.J.
PDB entry 9ca6: Rns Pocket Mutant - I14F/I17F
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-06-17
Authors: Tolbert, J.D., Midgett, C.R., Kull, F.J.
PDB entry 9ca7: Cryo-EM structure of human SRCAP-nucleosome complex in the fully-engaged state (composite structure)
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G.
PDB entry 9ca8: Cryo-EM structure of human SRCAP-nucleosome complex in the partially-engaged state (composite structure)
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G., Patel, A.B.
PDB entry 9ca9: Cryo-EM structure of the human SRCAP complex in the unbound state (composite structure)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G.
PDB entry 9caa: Cryo-EM structure of human SRCAP-nucleosome complex in the pre-engaged state (composite structure)
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G.
PDB entry 9cab: Cryo-EM structure of human SRCAP-nucleosome complex in the encounter state (composite structure)
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G.
PDB entry 9cac: Cryo-EM structure of the RuvBL lobe of the native human TIP60 complex (composite structure)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G., Patel, A.B.
PDB entry 9cad: Cryo-EM structure of the TRRAP lobe of the native human TIP60 complex (composite structure)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G., Patel, A.B.
PDB entry 9cae: Cryo-EM structure of the reconstituted RuvBL lobe of the human TIP60 complex (composite structure)
Classification: GENE REGULATION
Source organism: Escherichia coli K-12; Homo sapiens; Rhodococcus rhodochrous
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G., Patel, A.B.
PDB entry 9caf: Cryo-EM structure of the reconstituted TRRAP lobe of the human TIP60 complex (composite structure)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2024-06-17
Authors: Louder, R.K., Park, G., Patel, A.B.
PDB entry 9cag: Human TOP3B-TDRD3 core complex in RNA pre-cleavage state
Classification: ISOMERASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-06-17
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9cah: Human TOP3B-TDRD3 complex
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-06-17
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9cai: High-resolution C. elegans 80S ribosome structure - class 1
Classification: RIBOSOME
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-06-17
Authors: Sehgal, E., Serrao, V.H.B., Arribere, J.
PDB entry 9caj: Human TOP3B-TDRD3 core complex in pre-cleavage state with ssDNA 5'-ACAGATATT-3
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-06-17
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9cak: Human TOP3B-TDRD3 core complex in DNA rejoining state with ssDNA 5'-GACAGATATT-3
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-06-17
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9cal: Human TOP3B-TDRD3 core complex in post-cleavage state with ssDNA 5'-ACAGATATT-3
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-06-17
Authors: Yang, X., Chen, X., Yang, W., Pommier, Y.
PDB entry 9cam: Aminopeptidase N close state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-06-17
Authors: Lyu, M., Zhang, Z.
PDB entry 9can: S.c INO80 in complex with Xenopus 0/40 nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-06-17
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9cao: Aminopeptidase N open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-06-17
Authors: Lyu, M., Zhang, Z.
PDB entry 9cap: Structure of the LPD-3 complex
Classification: LIPID TRANSPORT
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-06-17
Authors: Clark, S.A., Vanni, S., Kang, Y.
PDB entry 9caq: Cryo-EM structure of a human MCM2-7 double hexamer formed from independently loaded MCM2-7 single hexamers
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-17
Authors: Yang, R., Hunker, O., Bleichert, F.
PDB entry 9car: human kidney Dipeptidyl peptidase 4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-06-17
Authors: Lyu, M., Zhang, Z.
PDB entry 9cas: Bat SARS-like Coronavirus RsSHC014 Spike Protein
Classification: VIRAL PROTEIN
Source organism: Bat SARS-like coronavirus RsSHC014
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-17
Authors: Acreman, C.M., McLellan, J.S.
PDB entry 9cat: DeltaArp8 INO80 bound to S.c 0/40 nucleosome, INO80 Core Module
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-06-17
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9cau: DeltaArp8 INO80 bound to S.c 0/40 nucleosome, Nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2024-06-17
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9cax: Structure of human SLC2A9 transporter
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-06-18
Authors: Khandelwal, N.K., Gupta, M., Stroud, R.M.
PDB entry 9cay: Ternary structure of Plasmodium falciparum apicoplast DNA polymerase (exo-minus)
Classification: DNA BINDING PROTEIN/DNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-06-18
Authors: Lo, C.-Y., Gao, Y.
PDB entry 9caz: Structure of kainate receptor Gluk2 in apo state
Classification: STRUCTURAL PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2024-06-18
Authors: Changping, Z., Nami, T., Guadalupe, S.
PDB entry 9cb0: SARS-CoV-2 S protein - Accum modified
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-06-18
Authors: Caveney, N.A.
PDB entry 9cb1: Cryo-EM Structure of the Human Neutralizing Antibody 5-1 in Complex with Prefusion Human Metapneumovirus F Glycoprotein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.24 Å
Deposited: 2024-06-18
Authors: Guo, L.Q., McLellan, J.S.
PDB entry 9cb2: NMR structure of the S. pombe Slr1 La motif RNA binding domain
Classification: RNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: SOLUTION NMR
Deposited: 2024-06-18
Authors: Donaldson, L.W.
PDB entry 9cb3: E2F1-Cyclin F Interface
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-06-18
Authors: Ngoi, P., Serrao, V.H., Rubin, S.M.
PDB entry 9cb5: Crystal structure of nucleolin in complex with MYC promoter G-quadruplex
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-06-18
Authors: Chen, L., Dickerhoff, J., Noinaj, N., Yang, D.
PDB entry 9cb6: Crystal Structure of RT-PhyR (ruthe_02744)
Classification: SIGNALING PROTEIN
Source organism: Rubellimicrobium thermophilum DSM 16684
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2024-06-18
Authors: Swingle, D., Isiorho, E.A., Gardner, K.H.
PDB entry 9cb7: DeltaNhp10 INO80 bound to S.c 0/40 nucleosome, Ino80-Nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2024-06-18
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9cb8: Crystal structure of dihydroorotate dehydrogenase from Leishmania brasiliensis in complex with 5-benzylidenepyrimidine-2,4,6(1H,3H,5H)-trione
Classification: OXIDOREDUCTASE
Source organism: Leishmania braziliensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-06-18
Authors: Froes, T.Q., Vaidergorn, M.M., dos Santos, T., Leite, P.I.P.L., Godoi, B.F., Emery, F.S., Nonato, M.C.
PDB entry 9cb9: Bacteriophage PhiTE extended tail
Classification: VIRAL PROTEIN
Source organism: Pectobacterium phage phiTE
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2024-06-18
Authors: Hodgkinson-Bean, J., Ayala, R.
PDB entry 9cba: Bacteriophage PhiTE contracted tail
Classification: VIRAL PROTEIN
Source organism: Pectobacterium phage phiTE
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-06-18
Authors: Hodgkinson-Bean, J., Ayala, R.
PDB entry 9cbb: Structure of urate bound human SLC2A9 transporter
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.15 Å
Deposited: 2024-06-18
Authors: Khandelwal, N.K., Gupta, M., Stroud, R.M.
PDB entry 9cbc: Yersinia entomophaga holotoxin complex in pore conformation
Classification: TOXIN
Source organism: Yersinia entomophaga
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.43 Å
Deposited: 2024-06-19
Authors: Low, Y.S., Landsberg, M.J.
PDB entry 9cbd: Pikromycin Thioesterase Domain
Classification: HYDROLASE
Source organism: Streptomyces venezuelae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-06-19
Authors: McCullough, T.M., Smith, J.L.
PDB entry 9cbe: Structure of a type III antifreeze protein isoform HPLC12 re-refined using standard protocols
Classification: ANTIFREEZE PROTEIN
Source organism: Zoarces americanus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-06-19
Authors: Wlodawer, A., Dauter, Z.
PDB entry 9cbf: Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with m-Aminomethyl Phenylthioketone
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-06-19
Authors: Goulart Stollmaier, J., Christianson, D.W.
PDB entry 9cbg: Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with m-Aminoethyl Phenylthioketone
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-06-19
Authors: Goulart Stollmaier, J., Christianson, D.W.
PDB entry 9cbh: Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with p-Aminomethyl Phenylthioketone
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-06-19
Authors: Goulart Stollmaier, J., Christianson, D.W.
PDB entry 9cbi: Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with p-Aminoethyl Phenylthioketone
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-06-19
Authors: Goulart Stollmaier, J., Christianson, D.W.
PDB entry 9cbj: Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with p-Aminopropyl Phenylthioketone
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2024-06-19
Authors: Goulart Stollmaier, J., Christianson, D.W.
PDB entry 9cbk: Crystal Structure of Danio rerio Histone Deacetylase 6 in Complex with p-Aminomethyl Phenylthioketone
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2024-06-19
Authors: Goulart Stollmaier, J., Watson, P.R., Christianson, D.W.
PDB entry 9cbl: Cryo-EM structure of epinephrine-bound alpha-2A-adrenergic receptor in complex with heterotrimeric Gi-protein
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Enterobacteria phage T4; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-06-19
Authors: Lou, J.S., Su, M., Wang, J., Do, H.N., Miao, Y., Huang, X.Y.
PDB entry 9cbm: Cryo-EM structure of dexmedetomidine-bound alpha-2A-adrenergic receptor in complex with heterotrimeric Gi-protein
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Enterobacteria phage T4; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-19
Authors: Lou, J.S., Su, M., Wang, J., Do, H.N., Miao, Y., Huang, X.Y.
PDB entry 9cbn: HAstV1 spike in complex with neutralizing Fabs 3H4 and 3B4
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human astrovirus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-06-19
Authors: Lanning, S., DuBois, R.M., Balasco Serrao, V.H.
PDB entry 9cbo: Methionine synthase from Thermus thermophilus HB8, Folate and Cobalamin Domains, Pre-Catalytic Conformation (Pre-Fol-on)
Classification: TRANSFERASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 3.34 Å
Deposited: 2024-06-19
Authors: Yamada, K., Mendoza, J., Koutmos, M.
PDB entry 9cbp: Methionine synthase from Thermus thermophilus HB8, Homocysteine, Folate, and Cobalamin Domains, Pre-Catalytic State (Pre-Hcy-on)
Classification: TRANSFERASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-06-19
Authors: Yamada, K., Mendoza, J., Koutmos, M.
PDB entry 9cbq: Methionine synthase from Thermus thermophilus HB8, Folate demethylation state (Fol-on)
Classification: TRANSFERASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2024-06-19
Authors: Yamada, K., Mendoza, J., Koutmos, M.
PDB entry 9cbr: Methionine synthase from Thermus thermophilus HB8, Homocysteine, Folate, and Cobalamin Domains, Catalytic Conformation (Hcy-on)
Classification: TRANSFERASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2024-06-19
Authors: Yamada, K., Menjdoza, J., Koutmos, M.
PDB entry 9cbs: Crystal structure of Chaetomium thermophilum Gcn2 HisRS-like domain, catalytic domain
Classification: TRANSLATION
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-06-20
Authors: Zhang, J.
PDB entry 9cbt: Crystal structure of human sirtuin 3 fragment (residues 118-399) bound to intermediates from reaction with NAD and inhibitor NH6-10
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-06-20
Authors: Fenwick, M.K., Young, H.J., Lin, H.
PDB entry 9cbu: Tetrahymena ribozyme with consensus water and magnesium ions
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-06-20
Authors: Kretsch, R.C., Li, S., Pintilie, G., Palo, M.Z., Case, D.A., Das, R., Zhang, K., Chiu, W.
PDB entry 9cbv: MicroED structure of the human MP20 protein
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.5 Å
Deposited: 2024-06-20
Authors: Nicolas, W.J., Shiriaeva, A., Martynowycz, M.W., Grey, A.C., Ruma, Y., Donaldson, P.J., Gonen, T.
PDB entry 9cbw: Tetrahymena ribozyme with consensus water and magnesium ions
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-06-20
Authors: Kretsch, R.C., Li, S., Pintilie, G., Palo, M.Z., Case, D.A., Das, R., Zhang, K., Chiu, W.
PDB entry 9cbx: Tetrahymena ribozyme with automatically identified water and magnesium ions
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-06-20
Authors: Kretsch, R.C., Li, S., Pintilie, G., Palo, M.Z., Case, D.A., Das, R., Zhang, K., Chiu, W.
PDB entry 9cby: Tetrahymena ribozyme with automatically identified water and magnesium ions
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-06-20
Authors: Kretsch, R.C., Li, S., Pintilie, G., Palo, M.Z., Case, D.A., Das, R., Zhang, K., Chiu, W.
PDB entry 9cbz: Cryo-EM structure of mouse TRPML1 channel Y404W at 2.86 Angstrom resolution
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-06-20
Authors: Gan, N., Jiang, Y.
PDB entry 9cc0: Human Mitochondrial LONP1 Degrading Casein, ATP-bound closed form
Classification: HYDROLASE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-06-20
Authors: Mindrebo, J.T., Lander, G.C.
PDB entry 9cc1: Human Mitochondrial LONP1 Idle State bound to substrate and 6 ADP
Classification: HYDROLASE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2024-06-20
Authors: Mindrebo, J.T., Lander, G.C.
PDB entry 9cc2: Cryo-EM structure of mouse PI(4,5)P2-bound TRPML1 channel at 2.46 Angstrom resolution
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2024-06-20
Authors: Gan, N., Jiang, Y.
PDB entry 9cc3: Human Mitochondrial LONP1 Stall State + casein
Classification: HYDROLASE
Source organism: Escherichia coli 'BL21-Gold(DE3)pLysS AG'; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-06-20
Authors: Mindrebo, J.T., Lander, G.C.
PDB entry 9cc4: Crystal structure of Z4 c3ii
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2024-06-20
Authors: Bera, A.K., Pyles, H., Saragovi, A., Kang, A., Baker, D.
PDB entry 9cc5: De novo design of high-affinity protein binders to bio active peptide Amylin
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-06-20
Authors: Bera, A.K., Liu, C., Kang, A., Baker, D.
PDB entry 9cc6: De novo design of high-affinity protein binders to RNA binding domain of G3bp1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-06-20
Authors: Bera, A.K., Liu, C., Kang, A., Baker, D.
PDB entry 9cc7: Bacteriophage PhiTE extended connector complex
Classification: VIRAL PROTEIN
Source organism: Pectobacterium phage phiTE
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-06-20
Authors: Hodgkinson-Bean, J., Ayala, R.
PDB entry 9cc8: Hexameric state of the NRC4 resistosome
Classification: PLANT PROTEIN
Source organism: Nicotiana benthamiana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2024-06-21
Authors: Liu, F., Yang, Z., Nogales, E., Staskawicz, B.J.
PDB entry 9cc9: Dodecameric state of the NRC4 resistosome
Classification: PLANT PROTEIN
Source organism: Nicotiana benthamiana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2024-06-21
Authors: Liu, F., Yang, Z., Nogales, E., Staskawicz, B.J.
PDB entry 9cca: Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-06-21
Authors: Shi, D., Ma, R., Tang, W.K., Tolia, N.H.
PDB entry 9ccb: X-ray crystal structure of methyl-coenzyme M reductase glutamine methylase (MgmA) from Methanothermobacter marburgensis with hydroxycobalamin
Classification: TRANSFERASE
Source organism: Methanothermobacter marburgensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-06-21
Authors: Lloyd, C.T., Booker, S.J.
PDB entry 9ccc: Crystal structure of human dihydroorotate dehydrogenase with new alkyne ligand
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-06-21
Authors: Purificacao, A.D., Andrade, C.H., Emery, F.S., Nonato, M.C.
PDB entry 9ccd: DeltaNhp10 INO80 bound to S.c 0/40 nucleosome, INO80 core module
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-06-21
Authors: Wu, H., Kaur, U., Narlikar, G.J., Cheng, Y.F.
PDB entry 9cce: structure of DYNA_1b7
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2024-06-21
Authors: Bera, A.K., Wu, K., Kang, A., Baker, D.
PDB entry 9ccf: Crystal Structure of DA7-2
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2024-06-21
Authors: Bera, A.K., Wu, K., Kang, A., Baker, D.
PDB entry 9ccg: Fusobacterium nucleatum BamA-Fab 9 complex
Classification: MEMBRANE PROTEIN
Source organism: Fusobacterium nucleatum; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2024-06-21
Authors: Overly Cottom, C., Noinaj, N.
PDB entry 9cch: Solution structure of the Bsu Anti-TRAP trimer
Classification: GENE REGULATION
Source organism: Bacillus subtilis
Experimental method: SOLUTION NMR, SOLUTION SCATTERING
Deposited: 2024-06-21
Authors: Foster, M.P., McElroy, C.A., Ihms, E.C., Kumar Yadav, D.
PDB entry 9cci: Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-06-21
Authors: Bajic, G., Jaiswal, D.
PDB entry 9ccj: Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2024-06-21
Authors: Bajic, G., Civljak, A.
PDB entry 9cck: Multi-copper oxidase with a C-terminal cupredoxin domain from Nitrosopumilus maritimus
Classification: OXIDOREDUCTASE
Source organism: Nitrosopumilus maritimus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-06-21
Authors: Voland, R.W., Lancaster, K.M.
PDB entry 9ccp: Cryo-EM structure of the EaCDCL pore
Classification: TOXIN
Source organism: Elizabethkingia anophelis Ag1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-06-23
Authors: Johnstone, B.A., Christie, M.P., Morton, C.M., Brown, H.G., Hanssen, E., Parker, M.W.
PDB entry 9ccq: Cryo-EM structure of the prepore-like EaCDCL short oligomer
Classification: TOXIN
Source organism: Elizabethkingia anophelis Ag1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-06-23
Authors: Johnstone, B.A., Christie, M.P., Morton, C.M., Brown, H.G., Hanssen, E., Parker, M.W.
PDB entry 9ccr: Crystal structure of the EspE7 thioesterase mutant R35A from the esperamicin biosynthetic pathway at 1.6 A
Classification: HYDROLASE
Source organism: Actinomadura verrucosospora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-06-23
Authors: Miller, M.D., Hankore, E.D., Xu, W., Kosgei, A.J., Bhardwaj, M., Thorson, J.S., Van Lanen, S.G., Phillips Jr., G.N.
PDB entry 9ccs: CryoEM Structure of Escherichia coli FimCH in complex with 2H04 Fab
Classification: CELL ADHESION
Source organism: Escherichia coli UTI89; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-06-23
Authors: Lopatto, E.D.B., Hultgren, S.J.
PDB entry 9cct: CryoEM Structure of Escherichia coli FimCH in complex with B7 Fab
Classification: CELL ADHESION
Source organism: Escherichia coli UTI89; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-06-23
Authors: Lopatto, E.D.B., Hultgren, S.J.
PDB entry 9ccu: CryoEM Structure of Escherichia coli FimCH in complex with F7 Fab
Classification: CELL ADHESION
Source organism: Escherichia coli UTI89; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-06-23
Authors: Lopatto, E.D.B., Hultgren, S.J.
PDB entry 9ccv: Crystal structure of human respiratory syncytial virus NS1 bound to human MED25 ACID
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human respiratory syncytial virus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2024-06-23
Authors: Kalita, P., Borek, D.M., Amarasinghe, G.K., Leung, D.W.
PDB entry 9ccw: CryoEM Structure of Escherichia coli FimCH in complex with 2C07 Fab
Classification: CELL ADHESION
Source organism: Escherichia coli UTI89; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2024-06-23
Authors: Lopatto, E.D.B., Hultgren, S.J.
PDB entry 9ccx: Crystal Structure of the Klebsiella pneumoniae LpxH/JH-LPH-86 complex
Classification: ANTIBIOTIC
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-06-23
Authors: Cochrane, C.S., Zhou, P.
PDB entry 9ccy: Crystal structure of the Klebsiella pneumoniae LpxH / JH-LPH-90 complex
Classification: ANTIBIOTIC
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-06-23
Authors: Cochrane, C.S., Zhou, P.
PDB entry 9ccz: Crystal Structure of the K. pneumoniae LpxH / JH-LPH-92 Complex
Classification: ANTIBIOTIC
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-06-23
Authors: Cochrane, C.S., Zhou, P.
PDB entry 9cd0: Crystal structure of the Klebsiella pneumoniae LpxH / JH-LPH-106 complex
Classification: ANTIBIOTIC
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-06-23
Authors: Cochrane, C.S., Zhou, P.
PDB entry 9cd1: Crystal structure of the Klebsiella pneumoniae LpxH / JH-LPH-107 complex
Classification: ANTIBIOTIC
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-06-23
Authors: Cochrane, C.S., Zhou, P.
PDB entry 9cd2: Structure of E. coli ZDHYS365 multi-ubiquitin domain protein
Classification: PROTEIN BINDING
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-06-23
Authors: Ye, Q., Gong, M., Corbett, K.D.
PDB entry 9cd3: Cryo-EM structure of Candidatus Saccharibacterium phosphoketolase complexed with thiamine diphosphate
Classification: LYASE
Source organism: Candidatus Saccharibacteria bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Deposited: 2024-06-24
Authors: Singal, B., Landwehr, G., Jewett, M.C.
PDB entry 9cd4: Cryo-EM structure of Candidatus Saccharibacterium phosphoketolase complexed with 2-acetyl-thiamine diphosphate
Classification: LYASE
Source organism: Candidatus Saccharibacteria bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-06-24
Authors: Singal, B., Landwehr, G., Jewett, M.C.
PDB entry 9cd5: FGFR1 Kinase Domain Soak with Inhibitor TYRA-300
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.939 Å
Deposited: 2024-06-24
Authors: Hoffman, I.H., Nelson, K.J., Rideout, M.C., Frye, C., Bensen, D.C., Hudkins, R.L.
PDB entry 9cd6: Cryo-EM structure of respiratory supercomplex I in open state
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-24
Authors: Zhang, Z., Maharjan, R., Tringides, M.
PDB entry 9cd7: FGFR3 Kinase Domain with Inhibitor TYRA-300
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2024-06-24
Authors: Hoffman, I.H., Nelson, K.J., Rideout, M.C., Nix, J.C., Frye, C., Bensen, D.C., Hudkins, R.L.
PDB entry 9cd8: Crystal Structure of Acetyl-CoA synthetase from Cryptococcus neoformans H99 in complex with inhibitor HGN-1310 (dd3-027)
Classification: LIGASE
Source organism: Cryptococcus neoformans var. grubii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-06-24
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9cd9: Structure of type II-2 alpha-synuclein filament from multiple system atrophy
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-06-24
Authors: Yan, N.L., Candido, F., Tse, E., Melo, A.A., Southworth, D.R., Merz, G.E.
PDB entry 9cda: Structure of type I-2 alpha-synuclein filament from multiple system atrophy
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-06-24
Authors: Yan, N.L., Candido, F., Tse, E., Melo, A.A., Southworth, D.R., Merz, G.E.
PDB entry 9cdb: CryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA6 (partial density) bound form with ATP (partial density).
Classification: ANTIVIRAL PROTEIN/RNA
Source organism: Bacteroidales bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-06-24
Authors: Majumder, P., Patel, D.J.
PDB entry 9cdc: Kalium channelrhodopsin 1 C110A mutant from Hyphochytrium catenoides, Dark State
Classification: MEMBRANE PROTEIN
Source organism: Hyphochytrium catenoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-06-24
Authors: Morizumi, T., Kim, K., Ernst, O.P.
PDB entry 9cdd: Kalium channelrhodopsin 1 C110A mutant from Hyphochytrium catenoides, Laser-Flash-Illuminated
Classification: MEMBRANE PROTEIN
Source organism: Hyphochytrium catenoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-06-24
Authors: Morizumi, T., Kim, K., Ernst, O.P.
PDB entry 9cde: Kalium channelrhodopsin 1 C110A mutant from Hyphochytrium catenoides, Continuous Illumination State
Classification: MEMBRANE PROTEIN
Source organism: Hyphochytrium catenoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2024-06-24
Authors: Morizumi, T., Kim, K., Ernst, O.P.
PDB entry 9cdf: Structure of MORC2 PD mutant binding to AMP-PNP
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2024-06-24
Authors: Tan, W., Shakeel, S.
PDB entry 9cdg: MORC2 ATPase dead mutant - S87A
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2024-06-24
Authors: Tan, W., Shakeel, S.
PDB entry 9cdh: MORC2 PD mutant with DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.95 Å
Deposited: 2024-06-25
Authors: Tan, W., Shakeel, S.
PDB entry 9cdi: MORC2 ATPase structure
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-06-25
Authors: Tan, W., Shakeel, S.
PDB entry 9cdj: MORC2 ATPase with DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2024-06-25
Authors: Tan, W., Shakeel, S.
PDB entry 9cdk: SARS-CoV-2 Mpro A173V mutant in complex with small molecule inhibitor Mpro61
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2024-06-25
Authors: Tang, S., Kenneson, J.R., Anderson, K.S.
PDB entry 9cdl: SARS-CoV-2 Mpro E166V/L50F double mutant in complex with small molecule inhibitor Mpro61
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-06-25
Authors: Tang, S., Kenneson, J.R., Huynh, K., Anderson, K.S.
PDB entry 9cdm: SARS-CoV-2 Mpro L50F mutant in complex with small molecule inhibitor Mpro61
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-06-25
Authors: Tang, S., Kenneson, J.R., Huynh, K., Anderson, K.S.
PDB entry 9cdn: Respiratory supercomplex I+III2 open state
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-06-25
Authors: Zhang, Z., Maharjan, R., Tringides, M.
PDB entry 9cdq: Transferrin Binding Protein A in complex with transferrin (iron bound in N lobe only)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Neisseria meningitidis serogroup B
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2024-06-25
Authors: Dubey, S., Noinaj, N.
PDB entry 9cdr: DosP Apo straight form
Classification: OXYGEN BINDING
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2024-06-25
Authors: Kumar, P., Kober, D.L.
PDB entry 9cds: Crystal structure of OspA ST1 from B. burgdorferi bound to monoclonal antibody LA-2
Classification: IMMUNE SYSTEM
Source organism: Borreliella burgdorferi B31; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-06-25
Authors: Laciak, A.R., Lai, Y.-T., Dhingra, Y.
PDB entry 9cdt: Crystal Structure of MCL-1-Peptide Complex
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-06-25
Authors: Bera, A.K., Rettie, S., Kang, A., Bhardwaj, G.
PDB entry 9cdu: Crystal Structure of Rhombotarget A-peptide Complex
Classification: MEMBRANE PROTEIN
Source organism: Acinetobacter terrae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-06-25
Authors: Bera, A.K., Rettie, S., Kang, A., Bhardwaj, G.
PDB entry 9cdv: Crystal Structure of Rhombotarget A
Classification: MEMBRANE PROTEIN
Source organism: Acinetobacter terrae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-06-25
Authors: Bera, A.K., Rettie, S., Kang, A., Bhardwaj, G.
PDB entry 9cdw: Crystal structure of HP1alpha chromoshadow domain in complex with KAP1 peptide
Classification: TRANSCRIPTION/PEPTIDE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-06-25
Authors: Selvam, K., Singh, R.K., Gaurav, N., Kutateladze, T.G.
PDB entry 9cdx: Crystal structure of DLK with inhibitor bound
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2024-06-25
Authors: Skene, R.J., Bell, J.A.
PDB entry 9cdy: Crystal structure of DLK with inhibitor bound
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-06-25
Authors: Skene, R.J., Bell, J.A.
PDB entry 9cdz: Crystal Structure of MDM2-Peptide Complex
Classification: ONCOPROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-06-25
Authors: Bera, A.K., Rettie, S., Bhardwaj, G.
PDB entry 9ce0: DosP Apo Bent form
Classification: OXYGEN BINDING
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-06-25
Authors: Kumar, P., Kober, D.L.
PDB entry 9ce2: Respiratory supercomplex I+III2+IV open state
Classification: ELECTRON TRANSPORT
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-06-25
Authors: Zhang, Z., Maharjan, R., Tringides, M.
PDB entry 9ce3: Structure of the TSC:WIPI3 lysosomal recruitment complex
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-06-26
Authors: Bayly-Jones, C., Lupton, C.J., D'Andrea, L., Ellisdon, A.M.
PDB entry 9ce4: Structure of CHK1 10-pt. mutant complex with LRRK2 indazole inhibitor compound 6
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2024-06-26
Authors: Palte, R.L., Zebisch, M., Henry, C., Barker, J.J.
PDB entry 9ce5: 20S Proteasome core particle
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2024-06-26
Authors: Zeytuni, N., Uday, A.B., Vahidi, S., Turner, M.
PDB entry 9ce6: Key structural role for the conserved cis-proline of soybean serine hydroxymethyltransferase
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-06-26
Authors: Beamer, L.J., Samarakoon, V.
PDB entry 9ce7: 20S Proteasome core particle open gate variant
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2024-06-26
Authors: Zeytuni, N., Uday, A.B., Vahidi, S., Turner, M.
PDB entry 9ce8: 20S Proteasome core particle in complex with Ixazomib
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-06-26
Authors: Zeytuni, N., Uday, A.B., Vahidi, S., Turner, M.
PDB entry 9ce9: Solution NMR structure of the fungal loosenin PcaLOOL12 from Phanerochaete carnosa
Classification: SUGAR BINDING PROTEIN
Source organism: Phanerochaete carnosa (strain HHB-10118-sp)
Experimental method: SOLUTION NMR
Deposited: 2024-06-26
Authors: Buchko, G.W., Master, E.R.
PDB entry 9cea: Crystal structure of HP1alpha chromoshadow domain
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-06-26
Authors: Selvam, K., Gaurav, N., Kutateladze, T.G.
PDB entry 9ceb: 20S Proteasome core particle beta-T1A mutant
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-06-26
Authors: Zeytuni, N., Uday, A.B., Vahidi, S., Turner, M.
PDB entry 9cec: SARS-CoV-2 3CL Protease complexed with covalent inhibitor BC671
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-06-26
Authors: Farzandh, S., Hoffpauir, Z.A., Meneely, K.M., Lamb, A.L.
PDB entry 9ced: SARS-CoV-2 3CL Protease complexed with covalent inhibitor VK13
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-06-26
Authors: Hoffpauir, Z.A., Meneely, K.M., Lamb, A.L.
PDB entry 9cee: 20S Proteasome core particle beta-T1A mutant auto-inhibited state (Frame 1)
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-06-26
Authors: Zeytuni, N., Uday, A.B., Vahidi, S., Turner, M.
PDB entry 9cef: Caulobacter crescentus FljN flagellar filament (symmetrized)
Classification: STRUCTURAL PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.22 Å
Deposited: 2024-06-26
Authors: Sanchez, J.C., Montemayor, E.J., Ploscariu, N.T., Parrell, D., Baumgardt, J.K., Yang, J.E., Sibert, B., Cai, K., Wright, E.R.
PDB entry 9ceg: 20S Proteasome core particle beta-T1A mutant resting state (Frame 20)
Classification: ANTIMICROBIAL PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-06-26
Authors: Zeytuni, N., Uday, A.B., Vahidi, S., Turner, M.
PDB entry 9ceh: SARS-CoV Papain-like Protease in complex with an inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2024-06-26
Authors: Chua, T.K., Song, Y.
PDB entry 9cei: Human DJ-1, no mixing, pink beam time-resolved serial crystallography
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-06-26
Authors: Zielinski, K.A., Dolamore, C., Dalton, K., Meisburger, S.P., Smith, N., Termini, J., Henning, R., Srajer, V., Hekstra, D., Pollack, L., Wilson, M.A.
PDB entry 9cej: Caulobacter crescentus FljJK flagellar filament (asymmetrical)
Classification: STRUCTURAL PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-06-26
Authors: Sanchez, J.C., Montemayor, E.J., Ploscariu, N.T., Parrell, D., Baumgardt, J.K., Yang, J.E., Sibert, B., Cai, K., Wright, E.R.
PDB entry 9cek: SARS-CoV-2 3CL Protease complexed with covalent inhibitor VK20
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2024-06-26
Authors: Hoffpauir, Z.A., Meneely, K.M., Lamb, A.L.
PDB entry 9cel: Juvenimicin Thioesterase
Classification: HYDROLASE
Source organism: Micromonospora chalcea subsp. izumensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-06-26
Authors: Akey, D.L., Smith, J.S., Choudhary, V.
PDB entry 9cem: Caulobacter crescentus FljJL flagellar filament (asymmetrical)
Classification: STRUCTURAL PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2024-06-26
Authors: Sanchez, J.C., Montemayor, E.J., Ploscariu, N.T., Parrell, D., Baumgardt, J.K., Yang, J.E., Sibert, B., Cai, K., Wright, E.R.
PDB entry 9cen: Structure of the thiocysteine lyase (SH) domain from guangnanmycin A biosynthetic pathway
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. CB01883
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-06-26
Authors: Li, G., Chang, C., Shen, B.
PDB entry 9ceo: Caulobacter crescentus FljJM flagellar filament (asymmetrical)
Classification: STRUCTURAL PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-06-26
Authors: Sanchez, J.C., Montemayor, E.J., Ploscariu, N.T., Parrell, D., Baumgardt, J.K., Yang, J.E., Sibert, B., Cai, K., Wright, E.R.
PDB entry 9cep: Caulobacter crescentus FljJN flagellar filament (asymmetrical)
Classification: STRUCTURAL PROTEIN
Source organism: Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-06-26
Authors: Sanchez, J.C., Montemayor, E.J., Ploscariu, N.T., Parrell, D., Baumgardt, J.K., Yang, J.E., Sibert, B., Cai, K., Wright, E.R.
PDB entry 9ceq: Lanthanide Binding Tag complex LBT3-NH2:La3+
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-06-27
Authors: Kt, S., Messinger, R.J., Favaro, D.C.
PDB entry 9cer: Guillardia theta Fanzor (GtFz) State 1
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Guillardia theta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9ces: Guillardia theta Fanzor (GtFz) State 2
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Guillardia theta; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cet: Guillardia theta Fanzor (GtFz) State 3
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Guillardia theta; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9ceu: Spizellomyces punctatus Fanzor (SpuFz) State 1
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Spizellomyces punctatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.
PDB entry 9cev: Spizellomyces punctatus Fanzor (SpuFz) State 2
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli K-12; Spizellomyces punctatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-06-27
Authors: Xu, P., Saito, M., Zhang, F.