LiteFold/PDB huggingface dataset:
PDB entry 3iue: Crystal structure of pantothenate synthetase in complex with 2-(5-methoxy-2-(5-Methylpyridin-2-ylsulfonylcarbamoyl)-1H-indol-1-yl) acetic acid
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2009-08-31
Authors: Silvestre, H.L., Wen, S., Hung, A.W., Ciulli, A., Blundell, T.L., Abell, C.
PDB entry 3iuf: Crystal structure of the C2H2-type zinc finger domain of human ubi-d4
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-31
Authors: Tempel, W., Xu, C., Bian, C., Adams-Cioaba, M., Eryilmaz, J., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
PDB entry 3iug: Crystal structure of the RhoGAP domain of RICS
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2009-08-31
Authors: Nedyalkova, L., Tempel, W., Tong, Y., Li, Y., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)
PDB entry 3iuh: Co2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase
Classification: ISOMERASE, METAL-BINDING PROTEIN
Source organism: Pseudomonas stutzeri
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-08-31
Authors: Yoshida, H., Yamaji, M., Ishii, T., Izumori, K., Kamitori, S.
PDB entry 3iui: Zn2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase
Classification: ISOMERASE, METAL-BINDING PROTEIN
Source organism: Pseudomonas stutzeri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-08-31
Authors: Yoshida, H., Yamaji, M., Ishii, T., Izumori, K., Kamitori, S.
PDB entry 3iuj: apPEP_WT2 opened state
Classification: HYDROLASE
Source organism: Aeromonas punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-31
Authors: Chiu, T.K.
PDB entry 3iuk: Crystal structure of putative bacterial protein of unknown function (DUF885, PF05960.1, ) from Arthrobacter aurescens TC1, reveals fold similar to that of M32 carboxypeptidases
Classification: structural genomics, unknown function
Source organism: Arthrobacter aurescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-08-31
Authors: Nocek, B., Chhor, G., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iul: apPEP_WT1 opened state
Classification: HYDROLASE
Source organism: Aeromonas punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-08-31
Authors: Chiu, T.K.
PDB entry 3ium: apPEP_WTX opened state
Classification: HYDROLASE
Source organism: Aeromonas punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2009-08-31
Authors: Chiu, T.K.
PDB entry 3iun: apPEP_D622N opened state
Classification: HYDROLASE
Source organism: Aeromonas punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-08-31
Authors: Chiu, T.K.
PDB entry 3iuo: The Crystal Structure of the C-terminal domain of the ATP-dependent DNA helicase RecQ from Porphyromonas gingivalis to 1.6A
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-08-31
Authors: Stein, A.J., Sather, A., Duggan, E., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iup: Crystal structure of Putative NADPH:quinone oxidoreductase (YP_296108.1) from RALSTONIA EUTROPHA JMP134 at 1.70 A resolution
Classification: OXIDOREDUCTASE
Source organism: Ralstonia eutropha
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-08-31
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3iuq: apPEP_D622N+PP closed state
Classification: HYDROLASE
Source organism: Aeromonas punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-08-31
Authors: Chiu, T.K.
PDB entry 3iur: apPEP_D266Nx+H2H3 opened state
Classification: HYDROLASE
Source organism: Aeromonas punctata; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-08-31
Authors: Chiu, T.K.
PDB entry 3ius: The structure of a functionally unknown conserved protein from Silicibacter pomeroyi DSS
Classification: structural genomics, unknown function
Source organism: Ruegeria pomeroyi DSS-3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2009-08-31
Authors: Tan, K., Tesar, C., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iut: The Crystal Structure of Cruzain in Complex with a Tetrafluorophenoxymethyl Ketone Inhibitor
Classification: HYDROLASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2009-08-31
Authors: Kerr, I.D., Debnath, M., Brinen, L.S.
PDB entry 3iuu: Crystal structure of Putative metallopeptidase (YP_676511.1) from MESORHIZOBIUM SP. BNC1 at 2.13 A resolution
Classification: HYDROLASE
Source organism: Mesorhizobium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2009-08-31
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3iuv: The structure of a member of TetR family (SCO1917) from Streptomyces coelicolor A3
Classification: structural genomics, unknown function
Source organism: Streptomyces coelicolor A3(2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.554 Å
Deposited: 2009-08-31
Authors: Tan, K., Cuff, M., Xu, X., Zheng, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iuw: Crystal structure of Activating signal cointegrator (NP_814290.1) from ENTEROCOCCUS FAECALIS V583 at 1.58 A resolution
Classification: RNA BINDING PROTEIN
Source organism: Enterococcus faecalis V583
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2009-08-31
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3iux: Crystal structure of human MDM2 in complex with a potent miniature protein inhibitor (18-residues)
Classification: LIGASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2009-08-31
Authors: Pazgier, M., Lu, W.
PDB entry 3iuy: Crystal structure of DDX53 DEAD-box domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-08-31
Authors: Schutz, P., Karlberg, T., Collins, R., Arrowsmith, C.H., Berglund, H., Bountra, C., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, A., Johansson, I., Kallas, A., Kraulis, P., Kotenyova, T., Kotzsch, A., Markova, N., Moche, M., Nielsen, T.K., Nordlund, P., Nyman, T., Persson, C., Roos, A.K., Siponen, M.I., Svensson, L., Thorsell, A.G., Tresaugues, L., Van Den Berg, S., Wahlberg, E., Weigelt, J., Welin, M., Wisniewska, M., Schuler, H.M., Structural Genomics Consortium (SGC)
PDB entry 3iuz: Crystal structure of Putative glyoxalase superfamily protein (YP_299723.1) from RALSTONIA EUTROPHA JMP134 at 1.90 A resolution
Classification: LYASE
Source organism: Ralstonia eutropha
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-08-31
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3iv0: Crystal structure of SusD homolog (NP_809186.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.35 A resolution
Classification: SUGAR BINDING PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2009-08-31
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3iv1: Coiled-coil domain of tumor susceptibility gene 101
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-08-31
Authors: Neculai, D., Avvakumov, G.V., Wernimont, A.K., Xue, S., Walker, J.R., Li, Y., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)
PDB entry 3iv2: Crystal structure of mature apo-Cathepsin L C25A mutant
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-08-31
Authors: Adams-Cioaba, M.A., Krupa, J.C., Mort, J.S., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J.
PDB entry 3iv3: The Structure of a putative tagatose 1,6-aldolase from Streptococcus mutans
Classification: LYASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-31
Authors: Cuff, M.E., Hatzos, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iv4: A putative oxidoreductase with a thioredoxin fold
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-08-31
Authors: Fan, Y., Xu, X., Cui, H., Ng, J., Savchenko, A., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iv5: Crystal structure of Fis bound to 27 bp optimal binding sequence F1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-08-31
Authors: Stella, S., Cascio, D., Johnson, R.C.
PDB entry 3iv6: Crystal Structure of Putative Zn-dependent Alcohol Dehydrogenases from Rhodobacter sphaeroides.
Classification: OXIDOREDUCTASE
Source organism: Rhodobacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-08-31
Authors: Kim, Y., Marshall, N., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iv7: Crystal structure of Iron-containing alcohol dehydrogenase (NP_602249.1) from Corynebacterium glutamicum ATCC 13032 KITASATO at 2.07 A resolution
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2009-08-31
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3iv8: N-acetylglucosamine-6-phosphate deacetylase from Vibrio cholerae complexed with fructose 6-phosphate
Classification: HYDROLASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2009-08-31
Authors: Osipiuk, J., Maltseva, N., Stam, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 3iv9: Structure of the B12-dependent Methionine Synthase (MetH) C-teminal half in a ""His-On"" conformation
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2009-08-31
Authors: Pattridge, K.A., Koutmos, M., Smith, J.L.
PDB entry 3iva: Structure of the B12-dependent Methionine Synthase (MetH) C-teminal half with AdoHcy bound
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-08-31
Authors: Pattridge, K.A., Koutmos, M., Smith, J.L.
PDB entry 3ivb: Structures of SPOP-Substrate Complexes: Insights into Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-MacroH2ASBCpep1
Classification: protein binding, ligase
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-08-31
Authors: Schulman, B.A., Miller, D.J., Calabrese, M.F., Seyedin, S.
PDB entry 3ivc: Crystal structure of pantothenate synthetase in complex with 2-(2-((benzofuran-2-ylmethoxy)carbonyl)-5-methoxy-1H-indol-1-yl)acetic acid
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2009-08-31
Authors: Silvestre, H.L., Hung, A.W., Wen, S., Ciulli, A., Blundell, T.L., Abell, C.
PDB entry 3ivd: Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Uridine
Classification: HYDROLASE
Source organism: Escherichia coli O6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-08-31
Authors: Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3ive: Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Cytidine
Classification: HYDROLASE
Source organism: Escherichia coli O6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-08-31
Authors: Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3ivf: Crystal structure of the talin head FERM domain
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2009-09-01
Authors: Elliott, P.R., Goult, B.T., Bate, N., Grossmann, J.G., Roberts, G.C.K., Critchley, D.R., Barsukov, I.L.
PDB entry 3ivg: Crystal structure of pantothenate synthetase in complex with 2-(2-((benzofuran-2-sulfonamido)methyl)-5-methoxy-1H-indol-1-yl)acetic acid
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-09-01
Authors: Silvestre, H.L., Hung, A.W., Wen, S., Ciulli, A., Blundell, T.L., Abell, C.
PDB entry 3ivh: Design and Synthesis of Potent BACE-1 Inhibitors with Cellular Activity: Structure-Activity Relationship of P1 Substituents
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-01
Authors: Pan, H.
PDB entry 3ivi: Design and Synthesis of Potent BACE-1 Inhibitors with Cellular Activity: Structure-Activity Relationship of P1 Substituents
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-09-01
Authors: Pan, H.
PDB entry 3ivk: Crystal Structure of the Catalytic Core of an RNA Polymerase Ribozyme Complexed with an Antigen Binding Antibody Fragment
Classification: immune system / RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-09-01
Authors: Koldobskaya, Y., Duguid, E.M., Shechner, D.M., Koide, S., Kossiakoff, A.A., Bartel, D.P., Piccirilli, J.A.
PDB entry 3ivl: The Crystal Structure of the Inactive Peptidase Domain of a Putative Zinc Protease from Bordetella parapertussis to 2.2A
Classification: HYDROLASE
Source organism: Bordetella parapertussis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-09-01
Authors: Stein, A.J., Wu, R., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3ivm: apPEP_WT+PP closed state
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Aeromonas punctata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-09-01
Authors: Chiu, T.K.
PDB entry 3ivn: Structure of the U65C mutant A-riboswitch aptamer from the Bacillus subtilis pbuE operon
Classification: RNA
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-09-01
Authors: Delfosse, V., Dagenais, P., Chausse, D., Di Tomasso, G., Legault, P.
PDB entry 3ivp: The structure of a possible transposon-related DNA-binding protein from Clostridium difficile 630.
Classification: DNA BINDING PROTEIN
Source organism: Clostridium difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2009-09-01
Authors: Tan, K., Marshall, N., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3ivq: Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-CiSBC2
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-09-01
Authors: Schulman, B.A., Miller, D.J., Calabrese, M.F., Seyedin, S.
PDB entry 3ivr: CRYSTAL STRUCTURE OF PUTATIVE long-chain-fatty-acid CoA ligase FROM Rhodopseudomonas palustris CGA009
Classification: LIGASE
Source organism: Rhodopseudomonas palustris
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-01
Authors: Patskovsky, Y., Toro, R., Foti, R., Dickey, M., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3ivs: Homocitrate Synthase Lys4
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2009-09-01
Authors: Bulfer, S.L., Scott, E.M., Couture, J.-F., Pillus, L., Trievel, R.C.
PDB entry 3ivt: Homocitrate Synthase Lys4 bound to 2-OG
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2009-09-01
Authors: Bulfer, S.L., Scott, E.M., Couture, J.-F., Pillus, L., Trievel, R.C.
PDB entry 3ivu: Homocitrate Synthase Lys4 bound to 2-OG
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2009-09-01
Authors: Bulfer, S.L., Scott, E.M., Couture, J.-F., Pillus, L., Trievel, R.C.
PDB entry 3ivv: Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-PucSBC1_pep1
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2009-09-01
Authors: Schulman, B.A., Miller, D.J., Calabrese, M.F., Seyedin, S.
PDB entry 3ivx: Crystal structure of pantothenate synthetase in complex with 2-(2-(benzofuran-2-ylsulfonylcarbamoyl)-5-methoxy-1H-indol-1-yl)acetic acid
Classification: LIGASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2009-09-02
Authors: Silvestre, H.L., Hung, A.W., Wen, S., Ciulli, A., Blundell, T.L., Abell, C.
PDB entry 3ivy: Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125, p212121 crystal form
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.352 Å
Deposited: 2009-09-02
Authors: McLean, K.J., Levy, C., Munro, A.W., Leys, D.
PDB entry 3ivz: Crystal structure of hyperthermophilic nitrilase
Classification: HYDROLASE
Source organism: Pyrococcus abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2009-09-02
Authors: Raczynska, J., Vorgias, C., Antranikian, G., Rypniewski, W.
PDB entry 3iw0: Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125, C2221 crystal form
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-09-02
Authors: McLean, K.J., Levy, C., Munro, A.W., Leys, D.
PDB entry 3iw1: Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125 in complex with androstenedione
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-02
Authors: McLean, K.J., Levy, C., Munro, A.W., Leys, D.
PDB entry 3iw2: Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125 in complex with econazole
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2009-09-02
Authors: McLean, K.J., Levy, C., Munro, A.W., Leys, D.
PDB entry 3iw3: Crystal structure of hyperthermophilic nitrilase
Classification: HYDROLASE
Source organism: Pyrococcus abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-02
Authors: Raczynska, J., Vorgias, C., Antranikian, G., Rypniewski, W.
PDB entry 3iw4: Crystal structure of PKC alpha in complex with NVP-AEB071
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-09-02
Authors: Stark, W., Rummel, G., Strauss, A., Cowan-Jacob, S.W.
PDB entry 3iw5: Human p38 MAP Kinase in Complex with an Indole Derivative
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-09-02
Authors: Gruetter, C., Simard, J.R., Rauh, D.
PDB entry 3iw6: Human p38 MAP Kinase in Complex with a Benzylpiperazin-Pyrrol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-09-02
Authors: Gruetter, C., Simard, J.R., Rauh, D.
PDB entry 3iw7: Human p38 MAP Kinase in Complex with an Imidazo-pyridine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-09-02
Authors: Gruetter, C., Simard, J.R., Rauh, D.
PDB entry 3iw8: Structure of Inactive Human p38 MAP Kinase in Complex with a Thiazole-Urea
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-02
Authors: Gruetter, C., Simard, J.R., Rauh, D.
PDB entry 3iwa: Crystal structure of a FAD-dependent pyridine nucleotide-disulphide oxidoreductase from Desulfovibrio vulgaris
Classification: OXIDOREDUCTASE
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-02
Authors: Bonanno, J.B., Freeman, J., Bain, K.T., Iizuka, M., Romero, R., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3iwb: T. maritima AdoMetDC in processed form
Classification: LYASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2009-09-02
Authors: Bale, S., Kavita, B., Ealick, S.E.
PDB entry 3iwc: T. maritima AdoMetDC complex with S-Adenosylmethionine methyl ester
Classification: LYASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-02
Authors: Bale, S., Kavita, B., Ealick, S.E.
PDB entry 3iwd: T. maritima AdoMetDC complex with 5'-Deoxy-5'-dimethyl thioadenosine
Classification: LYASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-02
Authors: Bale, S., Kavita, B., Ealick, S.E.
PDB entry 3iwe: Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD85646
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2009-09-02
Authors: Qiu, W., Hutchinson, A., Wernimont, A., Lin, Y.-H., Kania, A., Ravichandran, M., Kozieradzki, I., Cossar, D., Schapira, M., Arrowsmith, C.H., Bountra, C., Weigelt, J., Edwards, A.M., Wyatt, P.G., Ferguson, M.A.J., Frearson, J.A., Brand, S.Y., Robinson, D.A., Bochkarev, A., Hui, R., Structural Genomics Consortium (SGC)
PDB entry 3iwf: The Crystal Structure of the N-terminal domain of a RpiR Transcriptional Regulator from Staphylococcus epidermidis to 1.4A
Classification: transcription regulator
Source organism: Staphylococcus epidermidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-09-02
Authors: Stein, A.J., Sather, A., Borovilos, M., Bargassa, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iwg: Acetyltransferase from GNAT family from Colwellia psychrerythraea.
Classification: TRANSFERASE
Source organism: Colwellia psychrerythraea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-02
Authors: Osipiuk, J., Stein, A., Shackelford, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3iwh: Crystal Structure of Rhodanese-like Domain Protein from Staphylococcus aureus
Classification: UNKNOWN FUNCTION
Source organism: Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-02
Authors: Kim, Y., Chruszcz, M., Minor, W., Edwards, A., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 3iwi: X-ray crystal structure of the extended-spectrum AmpC omega loop insertion (H210AAA) mutant beta-lactamase at 1.64 Angstrom resolution
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2009-09-02
Authors: Shoichet, B.K., Thomas, V.L.
PDB entry 3iwj: Crystal structure of aminoaldehyde dehydrogenase 2 from Pisum sativum (PsAMADH2)
Classification: OXIDOREDUCTASE
Source organism: Pisum sativum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2009-09-02
Authors: Kopecny, D., Morera, S., Briozzo, P.
PDB entry 3iwk: Crystal structure of aminoaldehyde dehydrogenase 1 from Pisum sativum (PsAMADH1)
Classification: OXIDOREDUCTASE
Source organism: Pisum sativum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-09-02
Authors: Kopecny, D., Morera, S., Briozzo, P.
PDB entry 3iwl: Crystal structure of cisplatin bound to a human copper chaperone (monomer)
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-09-02
Authors: Boal, A.K., Rosenzweig, A.C.
PDB entry 3iwm: The octameric SARS-CoV main protease
Classification: HYDROLASE
Source organism: SARS coronavirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2009-09-02
Authors: Zhong, N., Zhang, S., Xue, F., Lou, Z., Rao, Z., Xia, B.
PDB entry 3iwn: Co-crystal structure of a bacterial c-di-GMP riboswitch
Classification: RNA/RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2009-09-02
Authors: Kulshina, N., Baird, N.J., Ferre-D'Amare, A.R.
PDB entry 3iwo: X-ray crystal structure of the extended-spectrum AmpC Y221G mutant beta-lactamase at 1.90 Angstrom resolution
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-03
Authors: Shoichet, B.K., Thomas, V.L.
PDB entry 3iwp: Crystal structure of human copper homeostasis protein CutC
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-09-03
Authors: Li, Y., Du, J., Zhang, P., Ding, J.
PDB entry 3iwq: X-ray crystal structure of the extended-spectrum AmpC E219K mutant beta-lactamase at 1.84 Angstrom resolution
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2009-09-03
Authors: Shoichet, B.K., Thomas, V.L.
PDB entry 3iwr: Crystal structure of class I chitinase from Oryza sativa L. japonica
Classification: HYDROLASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2009-09-03
Authors: Kezuka, Y., Watanabe, T., Nonaka, T.
PDB entry 3iwt: Structure of hypothetical molybdenum cofactor biosynthesis protein B from Sulfolobus tokodaii
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-03
Authors: Antonyuk, S.V., Ellis, M.J., Strange, R.W., Hasnain, S.S., Bessho, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3iwu: Crystal structure of Y116T/I16A double mutant of 5-hydroxyisourate hydrolase
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-03
Authors: Cendron, L., Ramazzina, I., Berni, R., Percudani, R., Zanotti, G.
PDB entry 3iwv: Crystal structure of Y116T mutant of 5-HYDROXYISOURATE HYDROLASE (TRP)
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2009-09-03
Authors: Cendron, L., Ramazzina, I., Berni, R., Percudani, R., Zanotti, G.
PDB entry 3iww: Crystal structure of human glutamate carboxypeptidase II (GCPII) in a complex with DBIBzL, a urea-based inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-03
Authors: Barinka, C., Lubkowski, J.
PDB entry 3iwx: Crystal structure of cisplatin bound to a human copper chaperone (dimer)
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2009-09-03
Authors: Boal, A.K., Rosenzweig, A.C.
PDB entry 3iwy: Crystal structure of human MDM2 complexed with D-peptide (12 residues)
Classification: LIGASE/LIGASE INHIBITOR
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2009-09-03
Authors: Pazgier, M., Lu, W.
PDB entry 3iwz: The c-di-GMP Responsive Global Regulator CLP Links Cell-Cell Signaling to Virulence Gene Expression in Xanthomonas campestris
Classification: TRANSCRIPTION
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-03
Authors: Chin, K.H., Tu, Z.L., Tseng, Y.H., Dow, J.M., Wang, A.H.J., Chou, S.H.
PDB entry 3ix0: Crystal structure of human seminal plasma protein PSP94
Classification: ANTITUMOR PROTEIN, APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-03
Authors: Kumar, M., Kumar, A., Jagtap, D.D., Mahale, S.D.
PDB entry 3ix1: Periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein from Bacillus halodurans
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacillus halodurans C-125
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-09-03
Authors: Bale, S., Rajashankar, K.R., Perry, K., Begley, T.P., Ealick, S.E.
PDB entry 3ix2: CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH ACYCLOVIR
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis variant bovis AF2122/97
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-09-03
Authors: de Azevedo Jr., W.F., Basso, L.A., Santos, D.S.
PDB entry 3ix3: LasR-OC12 HSL complex
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-09-03
Authors: Zou, Y., Nair, S.K.
PDB entry 3ix4: LasR-TP1 complex
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-03
Authors: Zou, Y., Nair, S.K.
PDB entry 3ix6: Crystal structure of Thymidylate synthase thyA from Brucella melitensis
Classification: TRANSFERASE
Source organism: Brucella melitensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-09-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3ix7: Crystal structure of a domain of functionally unknown protein from Thermus thermophilus HB8
Classification: Structural Genomics, Unknown function
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2009-09-03
Authors: Chang, C., Li, H., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3ix8: LasR-TP3 complex
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-03
Authors: Zou, Y., Nair, S.K.
PDB entry 3ix9: Crystal structure of Streptococcus pneumoniae dihydrofolate reductase - Sp9 mutant
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-09-03
Authors: Yennawar, N.H.
PDB entry 3ixa: Human Class I MHC HLA-A2(A150P) in complex with the Tax peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-09-03
Authors: Borbulevych, O.Y., Baker, B.M.
PDB entry 3ixb: X-ray crystal structure of the extended-spectrum AmpC E219K mutant beta-lactamase complexed with benzo(b)thiophene-2-boronic acid (BZB) at 1.63 Angstrom resolution
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2009-09-03
Authors: Shoichet, B.K., Thomas, V.L.
PDB entry 3ixc: Crystal structure of hexapeptide transferase family protein from Anaplasma phagocytophilum
Classification: TRANSFERASE
Source organism: Anaplasma phagocytophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2009-09-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3ixd: X-ray crystal structure of the extended-spectrum AmpC V298E mutant beta-lactamase at 2.64 Angstrom resolution
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2009-09-03
Authors: Shoichet, B.K., Thomas, V.L.
PDB entry 3ixe: Structural basis of competition between PINCH1 and PINCH2 for binding to the ankyrin repeat domain of integrin-linked kinase
Classification: SIGNALING PROTEIN/SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-03
Authors: Chiswell, B.P., Stiegler, A.L., Boggon, T.J., Calderwood, D.A.
PDB entry 3ixf: Crystal Structure of Dehaloperoxidase B at 1.58 and Structural Characterization of the AB Dimer from Amphitrite ornata
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2009-09-03
Authors: de Serrano, V.S., D'Antonio, J., Thompson, M.K., Franzen, S., Ghiladi, R.A.
PDB entry 3ixg: X-ray crystal structure of the extended-spectrum AmpC T70I mutant beta-lactamase with and without benzo(b)thiophene-2-boronic acid bound at 2.14 Angstrom resolution
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2009-09-04
Authors: Shoichet, B.K., Thomas, V.L.
PDB entry 3ixh: X-ray crystal structure of the extended-spectrum AmpC Y221G mutant beta-lactamase in complex with cefotaxime at 2.3 Angstrom resolution
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-09-04
Authors: Shoichet, B.K., Thomas, V.L.
PDB entry 3ixj: Crystal structure of beta-secretase 1 in complex with selective beta-secretase 1 inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-09-04
Authors: Borkakoti, N., Lindberg, J., Nystrom, S.
PDB entry 3ixk: Potent beta-secretase 1 inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-09-04
Authors: Borkakoti, N., Lindberg, J.D., Nystrom, S.
PDB entry 3ixl: Crystal structure of the Gly74Cys-Cys188Ser mutant of arylmalonate decarboxylase in the liganded form
Classification: LYASE
Source organism: Bordetella bronchiseptica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2009-09-04
Authors: Nakasako, M., Obata, R.
PDB entry 3ixm: Structure of the Gly74Cys mutant of arylmalonate decarboxylase in the sulfate ion associated form
Classification: LYASE
Source organism: Bordetella bronchiseptica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-04
Authors: Nakasako, M., Obata, R.
PDB entry 3ixn: Crystal structure of d(CCGGTACCGG) as B-DNA duplex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2009-09-04
Authors: Venkadesh, S., Mandal, P.K., Gautham, N.
PDB entry 3ixo: Crystal Structure of uncomplexed HIV_1 Protease Subtype A
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-09-04
Authors: Robbins, A., McKenna, R.
PDB entry 3ixp: Crystal structure of the ecdysone receptor bound to BYI08346
Classification: TRANSCRIPTION
Source organism: Helicoverpa armigera; Heliothis virescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2009-09-04
Authors: Moras, D., Billas, I.M.L., Browning, C.
PDB entry 3ixq: Structure of ribose 5-phosphate isomerase a from methanocaldococcus jannaschii
Classification: ISOMERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2009-09-04
Authors: Antonyuk, S.V., Ellis, M.J., Strange, R.W., Hasnain, S.S., Bessho, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3ixr: Crystal Structure of Xylella fastidiosa PrxQ C47S Mutant
Classification: OXIDOREDUCTASE
Source organism: Xylella fastidiosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-09-04
Authors: Horta, B.B., Oliveira, M.A., Discola, K.F., Cussiol, J.R.R., Netto, L.E.S.
PDB entry 3ixs: Ring1B C-terminal domain/RYBP C-terminal domain Complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-09-04
Authors: Wang, R., Taylor, A.B., Kim, C.A.
PDB entry 3ixt: Crystal Structure of Motavizumab Fab Bound to Peptide Epitope
Classification: IMMUNE SYSTEM
Source organism: Human respiratory syncytial virus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2009-09-04
Authors: McLellan, J.S., Chen, M., Kim, A., Yang, Y., Graham, B.S., Kwong, P.D.
PDB entry 3ixv: Scorpion Hemocyanin resting state pseudo atomic model built based on cryo-EM density map
Classification: OXYGEN BINDING
Source organism: Androctonus australis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2009-02-13
Authors: Cong, Y., Zhang, Q., Woolford, D., Schweikardt, T., Khant, H., Ludtke, S., Chiu, W., Decker, H.
PDB entry 3ixw: Scorpion Hemocyanin activated state pseudo atomic model built based on cryo-EM density map
Classification: OXYGEN BINDING
Source organism: Androctonus australis
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2009-02-13
Authors: Cong, Y., Zhang, Q., Woolford, D., Schweikardt, T., Khant, H., Ludtke, S., Chiu, W., Decker, H.
PDB entry 3ixx: The pseudo-atomic structure of West Nile immature virus in complex with Fab fragments of the anti-fusion loop antibody E53
Classification: VIRUS
Source organism: Mus musculus; West Nile virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2009-02-26
Authors: Cherrier, M.V., Kaufmann, B., Nybakken, G.E., Lok, S.M., Warren, J.T., Nelson, C.A., Kostyuchenko, V.A., Holdaway, H.A., Chipman, P.R., Kuhn, R.J., Diamond, M.S., Rossmann, M.G., Fremont, D.H.
PDB entry 3ixy: The pseudo-atomic structure of dengue immature virus in complex with Fab fragments of the anti-fusion loop antibody E53
Classification: VIRUS
Source organism: Dengue virus 2; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 23 Å
Deposited: 2009-02-26
Authors: Cherrier, M.V., Kaufmann, B., Nybakken, G.E., Lok, S.M., Warren, J.T., Nelson, C.A., Kostyuchenko, V.A., Holdaway, H.A., Chipman, P.R., Kuhn, R.J., Diamond, M.S., Rossmann, M.G., Fremont, D.H.
PDB entry 3ixz: Pig gastric H+/K+-ATPase complexed with aluminium fluoride
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 6.5 Å
Deposited: 2009-03-09
Authors: Abe, K., Tani, K., Nishizawa, T., Fujiyoshi, Y.
PDB entry 3iy0: Variable domains of the x-ray structure of Fab 14 fitted into the cryoEM reconstruction of the virus-Fab 14 complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.5 Å
Deposited: 2009-04-07
Authors: Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.
PDB entry 3iy1: Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 18 Å
Deposited: 2009-04-09
Authors: Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Battisti, A.J., Parrish, C.R., Rossmann, M.G.
PDB entry 3iy2: Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM reconstruction of the virus-Fab 6 complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 18 Å
Deposited: 2009-04-09
Authors: Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.
PDB entry 3iy3: Variable domains of the computer generated model (WAM) of Fab 8 fitted into the cryoEM reconstruction of the virus-Fab 8 complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.1 Å
Deposited: 2009-04-09
Authors: Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.
PDB entry 3iy4: Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.7 Å
Deposited: 2009-04-09
Authors: Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.
PDB entry 3iy5: Variable domains of the mouse Fab (1AIF) fitted into the cryoEM reconstruction of the virus-Fab 16 complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 18 Å
Deposited: 2009-04-09
Authors: Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.
PDB entry 3iy6: Variable domains of the computer generated model (WAM) of Fab E fitted into the cryoEM reconstruction of the virus-Fab E complex
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2009-04-09
Authors: Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.
PDB entry 3iy7: Variable domains of the computer generated model (WAM) of Fab F fitted into the cryoEM reconstruction of the virus-Fab F complex
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 14 Å
Deposited: 2009-04-09
Authors: Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.
PDB entry 3iy8: Leishmania tarentolae Mitonchondrial Ribosome small subunit
Classification: RIBOSOME
Source organism: Escherichia coli; Leishmania tarentolae
Experimental method: ELECTRON MICROSCOPY
Resolution: 14.1 Å
Deposited: 2009-04-16
Authors: Sharma, M.R., Booth, T.M., Simpson, L., Maslov, D.A., Agrawal, R.K.
PDB entry 3iy9: Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model
Classification: RIBOSOME
Source organism: Escherichia coli; Homo sapiens; Leishmania Tarentolae
Experimental method: ELECTRON MICROSCOPY
Resolution: 14.1 Å
Deposited: 2009-04-20
Authors: Sharma, M.R., Booth, T.M., Simpson, L., Maslov, D.A., Agrawal, R.K.
PDB entry 3iya: Association of the pr peptides with dengue virus blocks membrane fusion at acidic pH
Classification: VIRUS
Source organism: Dengue virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 22 Å
Deposited: 2009-06-01
Authors: Yu, I., Holdaway, H.A., Chipman, P.R., Kuhn, R.J., Rossmann, M.G., Chen, J.
PDB entry 3iyb: Poliovirus early RNA-release intermediate
Classification: VIRAL PROTEIN
Source organism: Human poliovirus 1; Human poliovirus 1 Mahoney; Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2009-07-21
Authors: Levy, H.C., Bostina, M., Filman, D.J., Hogle, J.M.
PDB entry 3iyc: Poliovirus late RNA-release intermediate
Classification: VIRAL PROTEIN
Source organism: Human poliovirus 1; Human poliovirus 1 Mahoney; Poliovirus 1; Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2009-07-21
Authors: Levy, H.C., Bostina, M., Filman, D.J., Hogle, J.M.
PDB entry 3iyd: Three-dimensional EM structure of an intact activator-dependent transcription initiation complex
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 19.8 Å
Deposited: 2009-08-01
Authors: Hudson, B.P., Quispe, J., Lara, S., Kim, Y., Berman, H., Arnold, E., Ebright, R.H., Lawson, C.L.
PDB entry 3iyf: Atomic Model of the Lidless Mm-cpn in the Open State
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2009-10-23
Authors: Zhang, J., Baker, M.L., Schroeder, G., Douglas, N.R., Reissmann, S., Jakana, J., Dougherty, M., Fu, C.J., Levitt, M., Ludtke, S.J., Frydman, J., Chiu, W.
PDB entry 3iyg: Ca model of bovine TRiC/CCT derived from a 4.0 Angstrom cryo-EM map
Classification: CHAPERONE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2009-11-28
Authors: Cong, Y., Baker, M.L., Ludtke, S.J., Frydman, J., Chiu, W.
PDB entry 3iyh: P22 procapsid coat protein structures reveal a novel mechanism for capsid maturation: Stability without auxiliary proteins or chemical cross-links
Classification: VIRUS
Source organism: Enterobacteria phage P22
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.2 Å
Deposited: 2009-12-14
Authors: Parent, K.N., Khayat, R., Tu, L.H., Suhanovsky, M.M., Cortines, J.R., Teschke, C.M., Johnson, J.E., Baker, T.S.
PDB entry 3iyi: P22 expanded head coat protein structures reveal a novel mechanism for capsid maturation: Stability without auxiliary proteins or chemical cross-links
Classification: VIRUS
Source organism: Enterobacteria phage P22
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.1 Å
Deposited: 2009-12-14
Authors: Parent, K.N., Khayat, R., Tu, L.H., Suhanovsky, M.M., Cortines, J.R., Teschke, C.M., Johnson, J.E., Baker, T.S.
PDB entry 3iyj: Bovine papillomavirus type 1 outer capsid
Classification: VIRUS
Source organism: Bovine papillomavirus type 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2009-12-15
Authors: Wolf, M., Garcea, R.L., Grigorieff, N., Harrison, S.C.
PDB entry 3iyk: Bluetongue virus structure reveals a sialic acid binding domain, amphipathic helices and a central coiled coil in the outer capsid proteins
Classification: VIRUS
Source organism: Bluetongue virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2010-01-25
Authors: Zhang, X., Boyce, M., Bhattacharya, B., Zhang, X., Schein, S., Roy, P., Zhou, Z.H.
PDB entry 3iyl: Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry
Classification: VIRUS
Source organism: Grass carp reovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2010-02-02
Authors: Zhang, X., Jin, L., Fang, Q., Hui, W., Zhou, Z.H.
PDB entry 3iym: Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling
Classification: VIRUS
Source organism: Penicillium stoloniferum virus S
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2010-02-05
Authors: Tang, J., Pan, J., Havens, W.F., Ochoa, W.F., Li, H., Sinkovits, R.S., Guu, T.S.Y., Ghabrial, S.A., Nibert, M.L., Tao, J.Y., Baker, T.S.
PDB entry 3iyo: Cryo-EM model of virion-sized HEV virion-sized capsid
Classification: VIRUS
Source organism: Hepatitis E virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.5 Å
Deposited: 2010-03-19
Authors: Xing, L., Mayazaki, N., Li, T.C., Simons, M.N., Wall, J.S., Moore, M., Wang, C.Y., Takeda, N., Wakita, T., Miyamura, T., Cheng, R.H.
PDB entry 3iyp: The Interaction of Decay-accelerating Factor with Echovirus 7
Classification: VIRUS
Source organism: Homo sapiens; Human echovirus 7
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.2 Å
Deposited: 2010-04-07
Authors: Plevka, P., Hafenstein, S., Zhang, Y., Harris, K.G., Cifuente, J.O., Bowman, V.D., Chipman, P.R., Lin, F., Medof, D.E., Bator, C.M., Rossmann, M.G.