LiteFold/PDB huggingface dataset:
PDB entry 8gul: Chitin-active AA10 LPMO (GbpA) complexed with Cu(II) from Vibrio campbellii
Classification: METAL BINDING PROTEIN
Source organism: Vibrio campbellii ATCC BAA-1116
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2022-09-12
Authors: Zhou, Y., Robinson, R.C., Suginta, W.
PDB entry 8gum: Chitin-active AA10 LPMO (GbpA) from Vibrio campbellii
Classification: METAL BINDING PROTEIN
Source organism: Vibrio campbellii ATCC BAA-1116
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-09-12
Authors: Zhou, Y., Robinson, R.C., Suginta, W.
PDB entry 8gun: Crystal structure of mutant H528A of EsaD from Staphylococcus aureus
Classification: TOXIN
Source organism: Staphylococcus aureus (strain NCTC 8325 / PS 47)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.30001 Å
Deposited: 2022-09-13
Authors: Zhang, Z.M., Wang, Y.J.
PDB entry 8guo: Crystal structure of the nuclease domain of EsaD in complex with EsaG from Staphylococcus aureus
Classification: TOXIN/ANTITOXIN
Source organism: Staphylococcus aureus (strain NCTC 8325 / PS 47)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59395 Å
Deposited: 2022-09-13
Authors: Zhang, Z.M., Wang, Y.J.
PDB entry 8gup: Crystal structure of EsaG from Staphylococcus aureus
Classification: ANTITOXIN
Source organism: Staphylococcus aureus (strain NCTC 8325 / PS 47)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29872 Å
Deposited: 2022-09-13
Authors: Zhang, Z.M., Wang, Y.J.
PDB entry 8guq: Cryo-EM structure of CB2-G protein complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2022-09-13
Authors: Wu, L.J., Hua, T., Liu, Z.J., Li, X.T., Chang, H.
PDB entry 8gur: Cryo-EM structure of CP-CB2-G protein complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-09-13
Authors: Wu, L.J., Hua, T., Liu, Z.J., Li, X.T., Chang, H.
PDB entry 8gus: Cryo-EM structure of HU-CB2-G protein complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2022-09-13
Authors: Wu, L.J., Hua, T., Liu, Z.J., Li, X.T., Chang, H.
PDB entry 8gut: Cryo-EM structure of LEI-CB2-Gi complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2022-09-13
Authors: Liu, Z.J., Hua, T., Li, X.T., Chang, H., Wu, L.J.
PDB entry 8guu: Crystal structure of pilus-specific sortase C mutant from Streptococcus sanguinis
Classification: HYDROLASE
Source organism: Streptococcus sanguinis SK36
Experimental method: X-RAY DIFFRACTION
Resolution: 2.008 Å
Deposited: 2022-09-13
Authors: Yadav, S., Parijat, P., Krishnan, V.
PDB entry 8guv: LecA from Pseudomonas aeruginosa in complex with tolcapone (CAS: 134308-13-7)
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2022-09-13
Authors: Kuhaudomlarp, S., Siebs, E., Varrot, A., Imberty, A., Titz, A.
PDB entry 8guw: Structure of Aurora Kinase A in complex with activator peptide
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-13
Authors: Lee, I.-G., Park, J.
PDB entry 8guy: human insulin receptor bound with two insulin molecules
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2022-09-14
Authors: Kim, J., Yunn, N., Ryu, S., Cho, Y.
PDB entry 8guz: Crystal structure of anti-FIXa IgG fab with FAST-Ig mutations
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-09-14
Authors: Koga, H., Yamano, T., Fukami, T.A., Sampei, Z., Shiraiwa, H., Torizawa, T.
PDB entry 8gv0: Crystal structure of anti-FIXa IgG fab without FAST-Ig mutations
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.192 Å
Deposited: 2022-09-14
Authors: Koga, H., Yamano, T., Fukami, T.A., Sampei, Z., Shiraiwa, H., Torizawa, T.
PDB entry 8gv1: Crystal structure of anti-FX IgG fab with FAST-Ig mutations
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.186 Å
Deposited: 2022-09-14
Authors: Koga, H., Yamano, T., Fukami, T.A., Sampei, Z., Shiraiwa, H., Torizawa, T.
PDB entry 8gv2: Crystal structure of anti-FX IgG fab without FAST-Ig mutations
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.274 Å
Deposited: 2022-09-14
Authors: Koga, H., Yamano, T., Fukami, T.A., Sampei, Z., Shiraiwa, H., Torizawa, T.
PDB entry 8gv3: The cryo-EM structure of GSNOR with NYY001
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2022-09-14
Authors: Xia, Y., Zhang, Q., Yao, D., Zhao, S., Xie, L., Ji, Y., Cao, Y.
PDB entry 8gv4: A human broadly neutralizing influenza A hemagglutinin stem-specific antibody PN-SIA28
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-14
Authors: Chen, Y., Song, H., Qi, J., Gao, G.F.
PDB entry 8gv5: Crystal structure of PN-SIA28 in complex with influenza hemagglutinin A/swine/Guangdong/104/2013 (H1N1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/swine/Guangdong/104/2013(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-09-14
Authors: Chen, Y., Song, H., Qi, J., Gao, G.F.
PDB entry 8gv6: Crystal structure of PN-SIA28 in complex with influenza hemagglutinin H14 (A/long-tailed duck/Wisconsin/10OS3912/2010)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/long-tailed duck/Wisconsin/10OS3912/2010(H14N6))
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-09-14
Authors: Chen, Y., Song, H., Qi, J., Gao, G.F.
PDB entry 8gv7: Crystal structure of PN-SIA28 in complex with influenza hemagglutinin H18 A/flat-faced bat/Peru/033/2010
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/flat-faced bat/Peru/033/2010(H18N11))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-09-14
Authors: Chen, Y., Song, H., Qi, J., Gao, G.F.
PDB entry 8gv8: The cryo-EM structure of hAE2 with DIDS
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2022-09-14
Authors: Zhang, Q., Jian, L., Yao, D., Rao, B., Hu, K., Xia, Y., Cao, Y.
PDB entry 8gv9: The cryo-EM structure of hAE2 with chloride ion
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2022-09-14
Authors: Zhang, Q., Jian, L., Yao, D., Rao, B., Hu, K., Xia, Y., Cao, Y.
PDB entry 8gva: The intermediate structure of hAE2 in basic pH
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-09-14
Authors: Zhang, Q., Jian, L., Yao, D., Rao, B., Hu, K., Xia, Y., Cao, Y.
PDB entry 8gvb: The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-09-14
Authors: Gao, G.F., Shi, Y., Ma, K., Chai, Y., Guan, J., Qi, J., Tan, S., Dong, T., Iwamoto, A., Kawana-Tachikawa, A.
PDB entry 8gvc: The cryo-EM structure of hAE2 with bicarbonate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2022-09-14
Authors: Zhang, Q., Jian, L., Yao, D., Rao, B., Hu, K., Xia, Y., Cao, Y.
PDB entry 8gvd: SARS-CoV-2 Mpro in complex with D-4-38
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-14
Authors: Liu, M., Huang, H.
PDB entry 8gve: The asymmetry structure of hAE2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2022-09-15
Authors: Zhang, Q., Jian, L., Yao, D., Rao, B., Hu, K., Xia, Y., Cao, Y.
PDB entry 8gvf: The outward-facing structure of hAE2 in basic pH
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-09-15
Authors: Zhang, Q., Jian, L., Yao, D., Rao, B., Hu, K., Xia, Y., Cao, Y.
PDB entry 8gvg: The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 (2F) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.37 Å
Deposited: 2022-09-15
Authors: Gao, G.F., Shi, Y., Ma, K., Chai, Y., Guan, J., Qi, J., Tan, S., Dong, T., Iwamoto, A., Kawana-Tachikawa, A.
PDB entry 8gvh: Human AE2 in acidic KNO3
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2022-09-15
Authors: Zhang, Q., Jian, L., Yao, D., Rao, B., Hu, K., Xia, Y., Cao, Y.
PDB entry 8gvi: The complex between H25-11 TCR and HLA-A24 bound to HIV-1 Nef138-8 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-09-15
Authors: Gao, G.F., Shi, Y., Tan, S., Ma, K., Chai, Y., Qi, J., Kawana-Tachikawa, A., Iwamoto, A., Dong, T., Guan, J.
PDB entry 8gvj: Crystal structure of cMET kinase domain bound by D6808
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2022-09-15
Authors: Chen, Y.H., Qu, L.Z.
PDB entry 8gvk: Cryo-EM structure of streptavidin
Classification: PROTEIN BINDING
Source organism: Streptomyces
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-09-15
Authors: Liu, N., Zheng, L.M., Peng, H.L., Wang, H.W.
PDB entry 8gvl: PTPN21 FERM
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-09-15
Authors: Chen, L., Zheng, Y.Y., Zhou, C.
PDB entry 8gvm: The structure of azide-bound cytochrome C oxidase determined using the crystals exposed to 20 mm azide solution for 4 days
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.851 Å
Deposited: 2022-09-15
Authors: Tsukihara, T., Shimada, A.
PDB entry 8gvn: Novel salt-resistant antimicrobial peptide, RR14
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-09-15
Authors: Lin, T.L., Tseng, T.S., Fan, P.J.
PDB entry 8gvv: PTPN21 PTP domain C1108S mutant
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-15
Authors: Chen, L., Zheng, Y.Y., Zhou, C.
PDB entry 8gvw: Cryo-EM structure of the human TRPC5 ion channel in lipid nanodiscs, class2
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2022-09-16
Authors: Won, J., Jeong, H., Lee, H.H.
PDB entry 8gvx: Cryo-EM structure of the human TRPC5 ion channel in complex with G alpha i3 subunits, class2
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2022-09-16
Authors: Won, J., Jeong, H., Lee, H.H.
PDB entry 8gvy: SARS CoV-2 Mpro in complex with D-3-149
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-16
Authors: Liu, M., Huang, H.
PDB entry 8gvz: Crystal structure of the human dihydroorotase domain in complex with the anticancer drug 5-fluorouracil
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-09-16
Authors: Liu, H.W., Yang, P.C., Huang, H.Y., Huang, C.Y.
PDB entry 8gw0: Crystal structure of the human dihydroorotase domain in complex with malic acid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2022-09-16
Authors: Yang, P.C., Liu, H.W., Huang, H.Y., Huang, C.Y.
PDB entry 8gw1: A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2022-09-16
Authors: Yan, L., Rao, Z., Lou, Z.
PDB entry 8gw2: Escherichia Coli Heat Labile Enterotoxin Type IIB B-Pentamer Circular Permutant CP13-14
Classification: TOXIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2022-09-16
Authors: Hsu, S.H., Yuan, Y.T., Sue, S.C.
PDB entry 8gw3: Crystal structure of human TAK1 kinase domain fused with TAB1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-09-16
Authors: Liu, J., Sun, W., Gao, J.
PDB entry 8gw4: SARS-CoV-2 Mpro 1-302/C145A in complex with peptide 8-1
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-09-16
Authors: Liu, M., Huang, H.
PDB entry 8gw5: Crystal structure of SaSsbA complexed with glycerol
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus subsp. aureus ED98
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-16
Authors: Yang, P.C., Huang, H.Y., Huang, C.Y.
PDB entry 8gw6: AtSLAC1 6D mutant in closed state
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-16
Authors: Lee, Y., Lee, S.
PDB entry 8gw7: AtSLAC1 6D mutant in open state
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-16
Authors: Lee, Y., Lee, S.
PDB entry 8gw8: the human PTH1 receptor bound to an intracellular biased agonist
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-09-16
Authors: Kobayashi, K., Kusakizako, T., Okamoto, H.H., Nureki, O.
PDB entry 8gwa: Structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium
Classification: PHOTOSYNTHESIS
Source organism: Chlorobaculum tepidum TLS
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-09-16
Authors: Chen, J.H., Zhang, X.
PDB entry 8gwb: SARS-CoV-2 E-RTC complex with RNA-nsp9
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2022-09-16
Authors: Yan, L.M., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwd: Crystal structure of AtHPPD-Y18734 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.889 Å
Deposited: 2022-09-16
Authors: Yang, G.-F., Lin, H.-Y., Dong, J.
PDB entry 8gwe: SARS-CoV-2 E-RTC complex with RNA-nsp9 and GMPPNP
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2022-09-16
Authors: Yan, L.M., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwf: A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2022-09-17
Authors: Yan, L.Y., Huang, Y.C., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwg: SARS-CoV-2 E-RTC complex with SMP-nsp9 and GMPPNP
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2022-09-17
Authors: Yan, L.M., Huang, Y.C., Ge, J., Liu, Z.Y., Gao, Y., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwh: PTPN21 PTP domain C1108S mutant in complex with SRC pTyr530 peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-17
Authors: Chen, L., Zheng, Y.Y., Zhou, C.
PDB entry 8gwi: SARS-CoV-2 E-RTC complex with SMP-nsp9 and GTP
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-09-17
Authors: Yan, L.M., Huang, Y.C., Ge, J., Liu, Z.Y., Gao, Y., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwj: SARS CoV-2 Mpro 1-302 C145A in complex with peptide 7
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-09-17
Authors: Liu, M., Huang, H.
PDB entry 8gwk: SARS-CoV-2 RNA E-RTC complex with RMP-nsp9 and GMPPNP
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2022-09-17
Authors: Yan, L.M., Huang, Y.C., Ge, J., Liu, Z.Y., Gao, Y., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwm: SARS-CoV-2 E-RTC bound with MMP-nsp9 and GMPPNP
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2022-09-17
Authors: Yan, L.M., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwn: A mechanism for SARS-CoV-2 RNA capping and its inhibitor of AT-527
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2022-09-17
Authors: Yan, L.M., Huang, Y.C., Ge, J., Liu, Z.Y., Gao, Y., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwo: A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-17
Authors: Yan, L.M., Huang, Y.C., Ge, J., Liu, Z.Y., Gao, Y., Rao, Z.H., Lou, Z.Y.
PDB entry 8gwr: Near full length Kidney type Glutaminase in complex with 2,2-Dimethyl-2,3-Dihydrobenzo[a] Phenanthridin-4(1H)-one (DDP)
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.801 Å
Deposited: 2022-09-17
Authors: Shankar, S., Jobichen, C., Sivaraman, J.
PDB entry 8gws: SARS-CoV-2 Mpro 1-302 c145a in complex with peptide 4
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-09-17
Authors: Liu, M., Fu, Z., Huang, H.
PDB entry 8gww: Small-molecule Allosteric Regulation Mechanism of SHP2
Classification: ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-09-17
Authors: Luo, Y., Zhu, J., Yu, K., Liu, B.
PDB entry 8gx2: The crystal structure of human CtsL in complex with 14c
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-18
Authors: Zhao, Y., Shao, M., Zhao, J., Yang, H., Rao, Z.
PDB entry 8gx3: The crystal structure of human Calpain-1 protease core in complex with 14c
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-09-18
Authors: Zhao, Y., Zhao, J., Shao, M., Yang, H., Rao, Z.
PDB entry 8gx4: Crystal structure of Diels-Alderase ApiI in complex with SAM
Classification: BIOSYNTHETIC PROTEIN
Source organism: Apiospora montagnei NRRL 25634
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97008 Å
Deposited: 2022-09-18
Authors: Zhou, J.H., Lu, J.Y.
PDB entry 8gx9: Crystal structure of SARS-CoV-2 RBD with P2C-1F11 and P2B-1G5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 4.01 Å
Deposited: 2022-09-19
Authors: Wang, X., Zhang, L., Ge, J.
PDB entry 8gxb: Crystal structure of NAD+ -II riboswitch in complex with NAD+
Classification: PROTEIN/RNA
Source organism: Homo sapiens; Streptococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-09-19
Authors: Xu, X.C., Ren, A.M.
PDB entry 8gxc: Crystal structure of NAD+ -II riboswitch in complex with NMN
Classification: PROTEIN/RNA
Source organism: Homo sapiens; Streptococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-19
Authors: Xu, X.C., Ren, A.M.
PDB entry 8gxd: L-LEUCINE DEHYDROGENASE FROM EXIGUOBACTERIUM SIBIRICUM
Classification: OXIDOREDUCTASE
Source organism: Exiguobacterium sibiricum (strain DSM 17290 / CIP 109462 / JCM 13490 / 255-15)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2022-09-19
Authors: Mu, X., Nie, Y., Wu, T., Wang, Y., Zhang, N., Yin, D., Xu, Y.
PDB entry 8gxe: PTPN21 FERM PTP complex
Classification: PROTEIN BINDING/ HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-09-19
Authors: Chen, L., Zheng, Y.Y., Zhou, C.
PDB entry 8gxf: Pseudomonas flexibilis GCN5 family acetyltransferase
Classification: TRANSFERASE
Source organism: Pseudomonas flexibilis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2022-09-20
Authors: Song, Y.J., Bao, R.
PDB entry 8gxg: The crystal structure of SARS-CoV-2 main protease in complex with 14a
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2022-09-20
Authors: Zhao, Y., Zhao, J., Shao, M., Yang, H., Rao, Z.
PDB entry 8gxh: The crystal structure of SARS-CoV-2 main protease in complex with 14b
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2022-09-20
Authors: Zhao, Y., Zhao, J., Shao, M., Yang, H., Rao, Z.
PDB entry 8gxi: The crystal structure of SARS-CoV-2 main protease in complex with 14c
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2022-09-20
Authors: Zhao, Y., Zhao, J., Shao, M., Yang, H., Rao, Z.
PDB entry 8gxj: Pseudomonas aeruginosa N-acetyltransferase domain-containing protein PA3270
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2022-09-20
Authors: Song, Y.J., Bao, R.
PDB entry 8gxk: Pseudomonas jinjuensis N-acetyltransferase
Classification: TRANSFERASE
Source organism: Pseudomonas jinjuensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-09-20
Authors: Song, Y.J., Bao, R.
PDB entry 8gxl: HUMAN SUGP1 433-577
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-09-20
Authors: Xu, K., Tong, L.
PDB entry 8gxm: HUMAN SUGP1 433-586
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-09-20
Authors: Xu, K., Tong, L.
PDB entry 8gxn: The crystal structure of CsFAOMT2 in complex with SAH
Classification: TRANSFERASE
Source organism: Theaceae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2022-09-20
Authors: Zhang, Z.M., Zhou, Y.E., Huang, H.S.
PDB entry 8gxo: The crystal structure of CsFAOMT1 in complex with SAH
Classification: TRANSFERASE
Source organism: Camellia sinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2022-09-20
Authors: Zhang, Z.M., Zhou, Y.E., Huang, H.S.
PDB entry 8gxp: Complex structure of RORgama with betulinic acid
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-09-20
Authors: Zhang, X.L., Xu, C., Bai, F.
PDB entry 8gxq: PIC-Mediator in complex with +1 nucleosome (T40N) in MH-binding state
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.04 Å
Deposited: 2022-09-21
Authors: Chen, X., Wang, X., Liu, W., Ren, Y., Qu, X., Li, J., Yin, X., Xu, Y.
PDB entry 8gxr: crystal structure of UBC domain of UBE2O
Classification: CONTRACTILE PROTEIN
Source organism: Trametes pubescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-21
Authors: Fu, Z., Zhu, W., Huang, H.
PDB entry 8gxs: PIC-Mediator in complex with +1 nucleosome (T40N) in H-binding state
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2022-09-21
Authors: Chen, X., Wang, X., Liu, W., Ren, Y., Qu, X., Li, J., Yin, X.
PDB entry 8gxt: Antibacterial peptide, mehamycin
Classification: ANTIMICROBIAL PROTEIN
Source organism: Meloidogyne hapla
Experimental method: SOLUTION NMR
Deposited: 2022-09-21
Authors: Isozumi, N., Ohki, S.
PDB entry 8gxu: 1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-09-21
Authors: Nakanishi, A., Kishikawa, J., Mitsuoka, K., Yokoyama, K.
PDB entry 8gxv: Structure of a bacterial serpin Choloropin derived from Cholorobium limicola
Classification: DNA BINDING PROTEIN
Source organism: Chlorobium limicola (strain DSM 245 / NBRC 103803 / 6330)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-09-21
Authors: Zhou, A., Xu, J.
PDB entry 8gxw: 2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-09-21
Authors: Nakanishi, A., Kishikawa, J., Mitsuoka, K., Yokoyama, K.
PDB entry 8gxx: 3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus.
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-21
Authors: Nakanishi, A., Kishikawa, J., Mitsuoka, K., Yokoyama, K.
PDB entry 8gxy: 2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus.
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-21
Authors: Nakanishi, A., Kishikawa, J., Mitsuoka, K., Yokoyama, K.
PDB entry 8gxz: 1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus.
Classification: HYDROLASE
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-21
Authors: Nakanishi, A., Kishikawa, J., Mitsuoka, K., Yokoyama, K.
PDB entry 8gy0: Agrocybe pediades linalool sunthase (Ap.LS)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Agrocybe pediades
Experimental method: X-RAY DIFFRACTION
Resolution: 1.988 Å
Deposited: 2022-09-21
Authors: Rehka, T., Sharma, D., Lin, F., Lim, C., Choong, Y.K., Chacko, J., Zhang, C.
PDB entry 8gy1: Crystal structure of Ag+ binding to Dendrorhynchus zhejiangensis ferritin
Classification: METAL BINDING PROTEIN
Source organism: Dendrorhynchus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-09-21
Authors: Ming, T.H., Su, X.R., Huo, C.H.
PDB entry 8gy2: Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans; Gluconobacter oxydans 621H
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-09-21
Authors: Adachi, T., Miyata, T., Makino, F., Tanaka, H., Namba, K., Sowa, K., Kitazumi, Y., Shirai, O.
PDB entry 8gy3: Cryo-EM Structure of Membrane-Bound Aldehyde Dehydrogenase from Gluconobacter oxydans
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-09-21
Authors: Adachi, T., Miyata, T., Makino, F., Tanaka, H., Namba, K., Sowa, K., Kitazumi, Y., Shirai, O.
PDB entry 8gy4: Crystal structure of Alongshan virus methyltransferase
Classification: VIRAL PROTEIN
Source organism: Alongshan virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-21
Authors: Chen, H., Lin, S., Lu, G.W.
PDB entry 8gy5: High-resolution structure of the cemiplimab Fab in complex with PD-1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-09-21
Authors: Heo, Y.-S., Jeong, T.J.
PDB entry 8gy6: Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Deposited: 2022-09-21
Authors: Wang, W., Ren, M., Li, F.
PDB entry 8gy7: Cryo-EM structure of ACTH-bound melanocortin-2 receptor in complex with MRAP1 and Gs protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-21
Authors: Luo, P., Feng, W.B., Ma, S.S., Dai, A.T., Yuan, Q.N., Wu, K., Yang, D.H., Wang, M.W., Xu, H.E., Jiang, Y.
PDB entry 8gy8: The structure of Bax1 from Pyrococcus furiosus
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-09-21
Authors: Wang, W.W., Liu, X.P.
PDB entry 8gy9: Crystal structure of Alongshan virus methyltransferase bound to S-adenosyl-L-methionine
Classification: VIRAL PROTEIN
Source organism: Alongshan virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-09-21
Authors: Chen, H., Lin, S., Lu, G.W.
PDB entry 8gya: Crystal structure of Alongshan virus methyltransferase bound to Sinefungin
Classification: VIRAL PROTEIN
Source organism: Alongshan virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.005 Å
Deposited: 2022-09-21
Authors: Chen, H., Lin, S., Lu, G.W.
PDB entry 8gyb: Crystal structure of Alongshan virus methyltransferase bound to S-adenosyl-L-homocysteine
Classification: VIRAL PROTEIN
Source organism: Alongshan virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.101 Å
Deposited: 2022-09-22
Authors: Chen, H., Lin, S., Lu, G.W.
PDB entry 8gyc: Annexin A5 protein dimer mutant
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-22
Authors: Hua, Z.C., Tang, W.
PDB entry 8gyd: Structure of Schistosoma japonicum Glutathione S-transferase bound with the ligand complex of 16
Classification: TRANSFERASE
Source organism: Schistosoma japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-22
Authors: Wen, X., Jin, R., Hu, H., Zhu, J., Song, W., Lu, X.
PDB entry 8gye: Crystal Structure of the 4-1BB in complex with ZG033 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-09-22
Authors: Zhu, M., Cheng, L.S., Gao, Y.
PDB entry 8gyf: Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (K192Y) in jellyfish Cytaeis uchidae from Biortus
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-22
Authors: Wu, J., Wang, F., Gui, W., Cheng, W., Yang, Y.
PDB entry 8gyg: Purification ,Crystallization and X-ray Diffraction analysis of a novel arysulfatase from Pseudoalteromonas atlantica T6c
Classification: HYDROLASE
Source organism: Pseudoalteromonas atlantica T6c
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-22
Authors: Dong, P.P., Wu, Y.K.
PDB entry 8gyh: Crystal structure of Fic25 (apo form) from Streptomyces ficellus
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces ficellus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-22
Authors: Kurosawa, S., Yoshida, A., Tomita, T., Nishiyama, M.
PDB entry 8gyi: Crystal structure of Fic25 (holo form) from Streptomyces ficellus
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces ficellus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-09-22
Authors: Kurosawa, S., Yoshida, A., Tomita, T., Nishiyama, M.
PDB entry 8gyj: Crystal structure of Fic25 complexed with PLP-(5S,6S)-N2-acetyl-DADH adduct from Streptomyces ficellus
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces ficellus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-09-22
Authors: Kurosawa, S., Yoshida, A., Tomita, T., Nishiyama, M.
PDB entry 8gyk: CryoEM structure of the RAD51_ADP filament
Classification: RECOMBINATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-09-22
Authors: Miki, Y., Luo, S.C., Ho, M.C.
PDB entry 8gym: Cryo-EM structure of Tetrahymena thermophila respiratory mega-complex MC IV2+(I+III2+II)2
Classification: ELECTRON TRANSPORT
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2022-09-23
Authors: Wu, M.C., Hu, Y.Q., Han, F.Z., Zhou, L.
PDB entry 8gyn: zebrafish TIPE1 strucutre in complex with PE
Classification: LIPID BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2022-09-23
Authors: Wang, W., Cao, S.J.
PDB entry 8gyo: Inner channel lipids regulated gating mechanism of human pannexins.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-23
Authors: Cong, Y., Jin, X., Kong, F., Yan, C.
PDB entry 8gyp: Cryo-EM structure of human Pannexin-3 in closed state.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-09-23
Authors: Cong, Y., Jin, X., Kong, F., Yan, C.
PDB entry 8gyq: Cryo-EM structure of human Pannexin-2 in pre-open state.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-23
Authors: Cong, Y., Jin, X., Kong, F., Yan, C.
PDB entry 8gyr: Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA
Classification: CELL ADHESION
Source organism: Leptospira interrogans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2022-09-23
Authors: Kumar, P., Akif, M.
PDB entry 8gyt: Cryo-EM structure of human Pannexin-3 R36S/F40R variant in pre-open state.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2022-09-23
Authors: Cong, Y., Jin, X., Kong, F., Wu, T., Yan, C.
PDB entry 8gyw: Cryo-EM structure of human CEPT1 complexed with CDP-choline
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-09-24
Authors: Qian, H.W., Wang, Z.H.
PDB entry 8gyx: Cryo-EM structure of human CEPT1
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-09-24
Authors: Qian, H.W., Wang, Z.H.
PDB entry 8gyy: Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose, 120 seconds
Classification: HYDROLASE
Source organism: Lentinula edodes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2022-09-24
Authors: Yang, L.Y.
PDB entry 8gyz: Crystal structure of transcription factor TGA7 from Arabidopsis
Classification: DNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-09-24
Authors: Shi, X.Q., Che, Z., Ming, Z.H.
PDB entry 8gz0: Structure of hypothetical protein TTHA1873 with phosphate from Thermus thermophilus
Classification: UNKNOWN FUNCTION
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2022-09-24
Authors: Yuvaraj, I., Sekar, K.
PDB entry 8gz1: Cryo-EM structure of human NaV1.6/beta1/beta2,apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-24
Authors: Li, Y., Jiang, D.
PDB entry 8gz2: Cryo-EM structure of human NaV1.6/beta1/beta2-4,9-anhydro-tetrodotoxin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-24
Authors: Li, Y., Jiang, D.
PDB entry 8gz3: Structure of human phagocyte NADPH oxidase in the resting state
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; Mus musculus; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-24
Authors: Chen, L., Liu, R.
PDB entry 8gz4: Crystal structure of MPXV phosphatase
Classification: VIRAL PROTEIN
Source organism: Monkeypox virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.802 Å
Deposited: 2022-09-25
Authors: Yang, H.T., Wang, W., Huang, H.J., Ji, X.Y.
PDB entry 8gz5: Crystal structure of neutralizing VHH P17 in complex with SARS-CoV-2 Alpha variant spike receptor-binding domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-09-25
Authors: Yamaguchi, K., Anzai, I., Maeda, R., Moriguchi, M., Watanabe, T., Imura, A., Takaori-Kondo, A., Inoue, T.
PDB entry 8gz6: Crystal structure of neutralizing VHH P17 in complex with SARS-CoV-2 Alpha variant spike receptor-binding domain
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-09-25
Authors: Yamaguchi, K., Anzai, I., Maeda, R., Moriguchi, M., Watanabe, T., Imura, A., Takaori-Kondo, A., Inoue, T.
PDB entry 8gz7: Octahedral supramolecular assembly of the bicomponent gamma-hemolysin octameric pore complexes from Staphylococcus aureus Newman.
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-09-26
Authors: Mishra, S., Roy, A., Dutta, S.
PDB entry 8gz8: Cryo-EM structure of Abeta2 fibril polymorph1
Classification: ANTIMICROBIAL PROTEIN
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2022-09-26
Authors: Xia, W.C., Zhang, M.M., Liu, C.
PDB entry 8gz9: Cryo-EM structure of Abeta2 fibril polymorph2
Classification: ANTIMICROBIAL PROTEIN
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-09-26
Authors: Xia, W.C., Zhang, M.M., Liu, C.
PDB entry 8gzb: SARS-CoV-2 3CLpro
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-26
Authors: Wang, F., Cen, Y.X., Tian, P.
PDB entry 8gzc: Crystal structure of EP300 HAT domain in complex with compound 10
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-26
Authors: Takahashi, M., Hanzawa, H.
PDB entry 8gzd: CRYSTAL STRUCTURE OF A NOVEL ALPHA/BETA HYDROLASE FROM THERMOMONOSPORA CURVATA IN APO FORM
Classification: HYDROLASE
Source organism: Thermomonospora curvata DSM 43183
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-09-26
Authors: Han, X., Gao, J., Bornscheuer, U.T., Wei, R., Liu, W.
PDB entry 8gze: Crystal Structure of human METTL9-SAH-SLC39A7 peptide complex
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-09-26
Authors: Zhao, W.T., Li, H.T.
PDB entry 8gzf: Crystal Structure of METTL9-SAH
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-26
Authors: Zhao, W.T., Li, H.T.
PDB entry 8gzg: Cryo-EM structure of Synechocystis sp. PCC 6803 RPitc
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Synechocystis sp. PCC 6803; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2022-09-27
Authors: Shen, L.Q., You, L.L., Zhang, Y.
PDB entry 8gzh: Cryo-EM structure of Synechocystis sp. PCC 6803 CTP-bound RPitc
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Synechocystis sp. PCC 6803; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2022-09-27
Authors: You, L.L., Shen, L.Q., Zhang, Y.
PDB entry 8gzi: Crystal Structure of ApiI in complex with SAH
Classification: BIOSYNTHETIC PROTEIN
Source organism: Apiospora montagnei NRRL 25634
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1221 Å
Deposited: 2022-09-27
Authors: Zhou, J.H., Lu, J.Y.
PDB entry 8gzj: Crystal structure of Cd2+-bound DNA aptamer
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.093 Å
Deposited: 2022-09-27
Authors: Gan, J.H., Liu, H.H., Gao, Y.Q.
PDB entry 8gzk: Crystal structure of Cd2+-bound DNA aptamer T10A mutant
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2022-09-27
Authors: Gan, J.H., Liu, H.H., Gao, Y.Q.
PDB entry 8gzl: Crystal structure of Cd2+-bound DNA aptamer
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-09-27
Authors: Gan, J.H., Liu, H.H., Gao, Y.Q.
PDB entry 8gzm: Crystal structure of Cd2+-bound DNA aptamer T22C mutant
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2022-09-27
Authors: Gan, J.H., Liu, H.H., Gao, Y.Q.
PDB entry 8gzn: IgM-var2CSA complex
Classification: CELL ADHESION/IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-27
Authors: Akhouri, R.R., Goel, S., Skoglund, U.
PDB entry 8gzo: Crystal structure of collagen heterotrimer with K, D, E, R residuesC
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2022-09-27
Authors: Fan, S.
PDB entry 8gzp: Cryo-EM structure of the NS5-SLA complex
Classification: VIRAL PROTEIN
Source organism: Dengue virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-27
Authors: Osawa, T., Ehara, H., Sekine, S.
PDB entry 8gzq: Cryo-EM structure of the NS5-NS3-SLA complex
Classification: VIRAL PROTEIN
Source organism: Dengue virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-09-27
Authors: Osawa, T., Ehara, H., Sekine, S.
PDB entry 8gzr: Cryo-EM structure of the the NS5-NS3 RNA-elongation complex
Classification: VIRAL PROTEIN
Source organism: Dengue virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-27
Authors: Osawa, T., Ehara, H., Sekine, S.
PDB entry 8gzu: Cryo-EM structure of Tetrahymena thermophila respiratory Megacomplex MC (IV2+I+III2+II)2
Classification: ELECTRON TRANSPORT
Source organism: Tetrahymena thermophila SB210
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2022-09-27
Authors: Wu, M.C., Hu, Y.Q., Han, F.Z., Zhou, L.
PDB entry 8gzv: Klebsiella pneumoniae FtsZ complexed with monobody (P212121)
Classification: CELL CYCLE
Source organism: Homo sapiens; Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-09-27
Authors: Matsumura, H., Yoshizawa, T., Fujita, J., Tanaka, S., Amesaka, H.
PDB entry 8gzw: Klebsiella pneumoniae FtsZ complexed with monobody (P21)
Classification: CELL CYCLE
Source organism: Homo sapiens; Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-27
Authors: Matsumura, H., Yoshizawa, T., Fujita, J., Tanaka, S., Amesaka, H.
PDB entry 8gzx: Escherichia coli FtsZ complexed with monobody (P212121)
Classification: CELL CYCLE
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-09-27
Authors: Matsumura, H., Yoshizawa, T., Fujita, J., Tanaka, S., Amesaka, H.
PDB entry 8gzy: Escherichia coli FtsZ complexed with monobody (P21)
Classification: CELL CYCLE
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-09-27
Authors: Matsumura, H., Yoshizawa, T., Fujita, J., Tanaka, S., Amesaka, H.
PDB entry 8gzz: Local refinement of SARS-CoV-2 Omicron BA.1 Spike glycoprotein in complex with rabbit monoclonal antibody 1H1 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-09-27
Authors: Guo, H., Gao, Y., Lu, Y., Yang, H., Ji, X.
PDB entry 8h00: SARS-CoV-2 Omicron BA.1 Spike glycoprotein in complex with rabbit monoclonal antibody 1H1 Fab in the class 1 conformation
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2022-09-27
Authors: Guo, H., Gao, Y., Lu, Y., Yang, H., Ji, X.
PDB entry 8h01: SARS-CoV-2 Omicron BA.1 Spike glycoprotein in complex with rabbit monoclonal antibody 1H1 Fab in class 2 conformation
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-09-27
Authors: Guo, H., Gao, Y., Lu, Y., Yang, H., Ji, X.
PDB entry 8h02: Crystal structure of Synechococcus elongatus PCC 7942 RNA polymerase SI3-tail
Classification: TRANSCRIPTION
Source organism: Synechococcus elongatus (strain PCC 7942 / FACHB-805)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.552 Å
Deposited: 2022-09-27
Authors: Shen, L.Q., Zhang, Y.
PDB entry 8h03: Major polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a preclinical Parkinson's disease patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-28
Authors: Fan, Y., Sun, Y.P., Wang, J., Liu, C.
PDB entry 8h04: Major polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-28
Authors: Fan, Y., Sun, Y.P., Wang, J., Liu, C.
PDB entry 8h05: Minor polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-28
Authors: Fan, Y., Sun, Y.P., Wang, J., Liu, C.
PDB entry 8h06: Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 RBD in complex with human ACE2 (local refinement)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2022-09-28
Authors: Zhao, Z.N., Xie, Y.F., Qi, J.X., Gao, G.F.