LiteFold/PDB huggingface dataset:
PDB entry 6w0x: Structure of KHK in complex with compound 4 (6-[(1~{S},5~{R})-6-(hydroxymethyl)-3-azabicyclo[3.1.0]hexan-3-yl]-2-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2020-03-03
Authors: Jasti, J.
PDB entry 6w0y: Structure of KHK in complex with compound 6 (2-[(1~{R},5~{S})-3-[5-cyano-6-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl)pyridin-2-yl]-3-azabicyclo[3.1.0]hexan-6-yl]ethanoic acid)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2020-03-03
Authors: Jasti, J.
PDB entry 6w0z: Structure of KHK in complex with compound 8 (2-[(1~{S},5~{R})-3-[2-[(2~{S})-2-methylazetidin-1-yl]-6-(trifluoromethyl)pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-yl]ethanoic acid)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-03-03
Authors: Jasti, J.
PDB entry 6w10: Structure of mouse TREX1 with E198K disease-associated mutation
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.80003 Å
Deposited: 2020-03-03
Authors: Zhou, W., Mohr, L., Maciejowski, J., Kranzusch, P.J.
PDB entry 6w11: The structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4)
Classification: TRANSCRIPTION
Source organism: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2020-03-03
Authors: Charbonneau, A.A., Gauvin, C.C., Lawrence, C.M.
PDB entry 6w12: Crystal Structure of the Carbohydrate Recognition Domain of the Human Macrophage Galactose C-Type Lectin Bound to the Tumor-Associated Tn Antigen
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-03-03
Authors: Birrane, G., Murphy, P.V., Gabba, A., Luz, J.G.
PDB entry 6w13: Human 8-oxoguanine glycosylase interrogating fully intrahelical oxoG lesion DNA
Classification: Lyase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2020-03-03
Authors: Shigdel, U., Verdine, G.
PDB entry 6w14: Crystal structure of tRNA (guanine-N(1)-)-methyltransferase from Mycobacterium smegmatis
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-03-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6w15: Crystal structure of tRNA (guanine-N(1)-)-methyltransferase with bound SAH from Mycobacterium smegmatis
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-03-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6w16: Crystal structure of a human metapneumovirus monomeric fusion protein complexed with 458 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1; Human metapneumovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-03-03
Authors: Huang, J., Mousa, J.J.
PDB entry 6w17: Structure of Dip1-activated Arp2/3 complex with nucleated actin filament
Classification: STRUCTURAL PROTEIN
Source organism: Amanita phalloides; Oryctolagus cuniculus; Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-03-03
Authors: Shaaban, M., Nolen, B.J., Chowdhury, S.
PDB entry 6w18: Structure of S. pombe Arp2/3 complex in inactive state
Classification: STRUCTURAL PROTEIN
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2020-03-03
Authors: Shaaban, M., Nolen, B.J., Chowdhury, S.
PDB entry 6w19: Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Classification: VIRUS
Source organism: Epstein-Barr virus (strain B95-8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2020-03-03
Authors: Liu, W., Cui, Y.X., Wang, C.Y., Li, Z.H., Gong, D.Y., Dai, X.H., Bi, G.Q., Sun, R., Zhou, Z.H.
PDB entry 6w1a: Crystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2 bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Streptococcus dysgalactiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-03-03
Authors: Capodagli, G.C., Neiditch, M.B.
PDB entry 6w1b: N-terminal domain of mouse surfactant protein B with bound lipid, Y59A/H79A mutant
Classification: SURFACTANT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2020-03-04
Authors: Rapoport, T.A., Bodnar, N.O.
PDB entry 6w1c: Human mAbs broadly protect against infection of arthritiogenic alphaviruses by recognizing conserved elements of the MXR8 receptor binding domain
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Homo sapiens; Mayaro virus (strain Brazil)
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2020-03-04
Authors: Miller, A.S., Kuhn, R.J.
PDB entry 6w1d: Structure of human mitochondrial complex Nfs1-ISCU2 (WT)-ISD11 with E.coli ACP1 at 1.8 A resolution (NIAU)2
Classification: TRANSFERASE
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.795 Å
Deposited: 2020-03-04
Authors: Boniecki, M.T., Cygler, M.
PDB entry 6w1e: Crystal structure of Streptococcus thermophilus SHP pheromone receptor Rgg3
Classification: DNA BINDING PROTEIN
Source organism: Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.202 Å
Deposited: 2020-03-04
Authors: Neiditch, M.B., Capodagli, G.C.
PDB entry 6w1f: Crystal structure of Streptococcus thermophilus SHP pheromone receptor Rgg3 bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-03-04
Authors: Neiditch, M.B., Capodagli, G.C.
PDB entry 6w1g: Crystal structure of the hydroxyglutarate synthase from Pseudomonas putida
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2020-03-04
Authors: Pereira, J.H., Thompson, M.G., Blake-Hedges, J.M., Keasling, J.D., Adams, P.D.
PDB entry 6w1h: Crystal structure of the hydroxyglutarate synthase in complex with 2-oxoadipate from Pseudomonas putida
Classification: LYASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2020-03-04
Authors: Pereira, J.H., Thompson, M.G., Blake-Hedges, J.M., Keasling, J.D., Adams, P.D.
PDB entry 6w1i: Re-interpretation of ppGpp (G4P) electron density in the deposited crystal structure of Xanthine phosphoribosyltransferase (XPRT) (1Y0B).
Classification: TRANSFERASE
Source organism: Bacillus subtilis (strain 168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-03-04
Authors: Satyshur, K.A., Anderson, B.W., Keck, J.L., Midwest Center for Structural Genomics (MCSG)
PDB entry 6w1j: Cryo-EM structure of 5HT3A receptor in presence of Alosetron
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2020-03-04
Authors: Basak, S., Chakrapani, S.
PDB entry 6w1k: Crystal structure of the hydroxyglutarate synthase in complex with 2-oxoadipate from Oryza sativa
Classification: LYASE
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-03-04
Authors: Pereira, J.H., Thompson, M.G., Blake-Hedges, J.M., Keasling, J.D., Adams, P.D.
PDB entry 6w1m: Cryo-EM structure of 5HT3A receptor in presence of Ondansetron
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2020-03-04
Authors: Basak, S., Chakrapani, S.
PDB entry 6w1n: Pig Ryanodine Receptor (WT) in 5mM EGTA condition
Classification: TRANSPORT PROTEIN/ISOMERASE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2020-03-04
Authors: Woll, K.W., Haji-Ghassemi, O., Van Petegem, F.
PDB entry 6w1o: RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus (strain BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2020-03-04
Authors: Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M.H., Hussein, R., Lassalle, L., Sutherlin, K.D., Young, I.D., Fuller, F.D., Gul, S., Kim, I.-S., Simon, P.S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C., Orville, A.M., Saichek, N., Northen, T.R., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovski, R., Mendez, D., Moriarty, N.W., Holton, J.M., Dobbek, H., Brewster, A.S., Adams, P.D., Sauter, N.K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V.K., Yano, J.
PDB entry 6w1p: RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus (strain BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2020-03-04
Authors: Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M.H., Hussein, R., Lassalle, L., Sutherlin, K.D., Young, I.D., Fuller, F.D., Gul, S., Kim, I.-S., Simon, P.S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C., Orville, A.M., Saichek, N., Northen, T.R., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovski, R., Mendez, D., Moriarty, N.W., Holton, J.M., Dobbek, H., Brewster, A.S., Adams, P.D., Sauter, N.K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V.K., Yano, J.
PDB entry 6w1q: RT XFEL structure of Photosystem II 50 microseconds after the second illumination at 2.27 Angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus (strain BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2020-03-04
Authors: Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M.H., Hussein, R., Lassalle, L., Sutherlin, K.D., Young, I.D., Fuller, F.D., Gul, S., Kim, I.-S., Simon, P.S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C., Orville, A.M., Saichek, N., Northen, T.R., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovski, R., Mendez, D., Moriarty, N.W., Holton, J.M., Dobbek, H., Brewster, A.S., Adams, P.D., Sauter, N.K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V.K., Yano, J.
PDB entry 6w1r: RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus (strain BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2020-03-04
Authors: Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M.H., Hussein, R., Lassalle, L., Sutherlin, K.D., Young, I.D., Fuller, F.D., Gul, S., Kim, I.-S., Simon, P.S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C., Orville, A.M., Saichek, N., Northen, T.R., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovski, R., Mendez, D., Moriarty, N.W., Holton, J.M., Dobbek, H., Brewster, A.S., Adams, P.D., Sauter, N.K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V.K., Yano, J.
PDB entry 6w1s: Atomic model of the mammalian Mediator complex
Classification: GENE REGULATION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2020-03-04
Authors: Zhao, H., Young, N., Asturias, F.
PDB entry 6w1t: RT XFEL structure of Photosystem II 250 microseconds after the second illumination at 2.01 Angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus (strain BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2020-03-04
Authors: Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M.H., Hussein, R., Lassalle, L., Sutherlin, K.D., Young, I.D., Fuller, F.D., Gul, S., Kim, I.-S., Simon, P.S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C., Orville, A.M., Saichek, N., Northen, T.R., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovski, R., Mendez, D., Moriarty, N.W., Holton, J.M., Dobbek, H., Brewster, A.S., Adams, P.D., Sauter, N.K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V.K., Yano, J.
PDB entry 6w1u: RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.09 Angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus (strain BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2020-03-04
Authors: Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M.H., Hussein, R., Lassalle, L., Sutherlin, K.D., Young, I.D., Fuller, F.D., Gul, S., Kim, I.-S., Simon, P.S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C., Orville, A.M., Saichek, N., Northen, T.R., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovski, R., Mendez, D., Moriarty, N.W., Holton, J.M., Dobbek, H., Brewster, A.S., Adams, P.D., Sauter, N.K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V.K., Yano, J.
PDB entry 6w1v: RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus elongatus (strain BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2020-03-04
Authors: Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M.H., Hussein, R., Lassalle, L., Sutherlin, K.D., Young, I.D., Fuller, F.D., Gul, S., Kim, I.-S., Simon, P.S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C., Orville, A.M., Saichek, N., Northen, T.R., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovski, R., Mendez, D., Moriarty, N.W., Holton, J.M., Dobbek, H., Brewster, A.S., Adams, P.D., Sauter, N.K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V.K., Yano, J.
PDB entry 6w1w: Crystal Structure of Motility Associated Killing Factor B from Vibrio cholerae
Classification: TOXIN
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2020-03-04
Authors: Kim, Y., Welk, L., Jedrzejczak, R., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6w1x: Cryo-EM structure of anti-CRISPR AcrIF9, bound to the type I-F crRNA-guided CRISPR surveillance complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Proteus penneri; Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-03-04
Authors: Hirschi, M., Santiago-Frangos, A., Wilkinson, R., Golden, S.M., Wiedenheft, B., Lander, G.
PDB entry 6w1y: Cryo-EM structure of 5HT3A receptor in presence of Palonosetron
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2020-03-04
Authors: Basak, S., Chakrapani, S.
PDB entry 6w1z: ClpAP Engaged1 State bound to RepA-GFP
Classification: CHAPERONE
Source organism: Escherichia coli; Escherichia coli (strain K12); synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2020-03-04
Authors: Lopez, K.L., Rizo, A.N., Tse, E., Lin, J., Scull, N.W., Thwin, A.C., Lucius, A.L., Shorter, J., Southworth, D.R.
PDB entry 6w20: ClpAP Disengaged State bound to RepA-GFP
Classification: CHAPERONE
Source organism: Escherichia coli; Escherichia coli (strain K12); synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-03-04
Authors: Lopez, K.L., Rizo, A.N., Tse, E., Lin, J., Scull, N.W., Thwin, A.C., Lucius, A.L., Shorter, J., Southworth, D.R.
PDB entry 6w21: ClpAP Engaged2 State bound to RepA-GFP
Classification: CHAPERONE
Source organism: Escherichia coli; Escherichia coli (strain K12); synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-03-04
Authors: Lopez, K.L., Rizo, A.N., Tse, E., Lin, J., Scull, N.W., Thwin, A.C., Lucius, A.L., Shorter, J., Southworth, D.R.
PDB entry 6w22: ClpA Engaged1 State bound to RepA-GFP (ClpA Focused Refinement)
Classification: CHAPERONE
Source organism: Escherichia coli (strain K12); synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-03-04
Authors: Lopez, K.L., Rizo, A.N., Tse, E., Lin, J., Scull, N.W., Thwin, A.C., Lucius, A.L., Shorter, J., Southworth, D.R.
PDB entry 6w23: ClpA Disengaged State bound to RepA-GFP (Focused Classification)
Classification: CHAPERONE
Source organism: Escherichia coli (strain K12); synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-03-04
Authors: Lopez, K.L., Rizo, A.N., Tse, E., Lin, J., Scull, N.W., Thwin, A.C., Lucius, A.L., Shorter, J., Southworth, D.R.
PDB entry 6w24: ClpA Engaged2 State bound to RepA-GFP (Focused Classification)
Classification: CHAPERONE
Source organism: Escherichia coli (strain K12); synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-03-04
Authors: Lopez, K.L., Rizo, A.N., Tse, E., Lin, J., Scull, N.W., Thwin, A.C., Lucius, A.L., Shorter, J., Southworth, D.R.
PDB entry 6w25: Crystal structure of the Melanocortin-4 Receptor (MC4R) in complex with SHU9119
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Pyrococcus abyssi; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-03-04
Authors: Yu, J., Gimenez, L.E., Hernandez, C.C., Wu, Y., Wein, A.H., Han, G.W., McClary, K., Mittal, S.R., Burdsall, K., Stauch, B., Wu, L., Stevens, S.N., Peisley, A., Williams, S.Y., Chen, V., Millhauser, G.L., Zhao, S., Cone, R.D., Stevens, R.C.
PDB entry 6w26: Terpenoid Cyclase FgGS in Complex with Mg, Inorganic Pyrophosphate, and Imidazole
Classification: LYASE
Source organism: Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-03-05
Authors: Herbst-Gervasoni, C.J., Christianson, D.W.
PDB entry 6w29: Trypanosoma cruzi Malic Enzyme in complex with inhibitor (MEC013)
Classification: OXIDOREDUCTASE/Inhibitor
Source organism: Trypanosoma cruzi (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2020-03-05
Authors: Mercaldi, G.F., Fagundes, M., Faria, J.N., Cordeiro, A.T.
PDB entry 6w2a: 1.65 A resolution structure of SARS-CoV 3CL protease in complex with inhibitor 7j
Classification: HYDROLASE/HYDROLASE Inhibitor
Source organism: Human SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-03-05
Authors: Kashipathy, M.M., Lovell, S., Battaile, K.P., Rathnayake, A.D., Zheng, J., Kim, Y., Nguyen, H.N., Chang, K.O., Groutas, W.C.
PDB entry 6w2b: Anomalous bromine signal reveals the position of Br-paroxetine complexed with the serotonin transporter at the central site
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.7 Å
Deposited: 2020-03-05
Authors: Coleman, J.A., Navratna, V., Yang, D.
PDB entry 6w2c: Anomalous iodine signal reveals the position of I-paroxetine complexed with the serotonin transporter at the central site
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 6.3 Å
Deposited: 2020-03-05
Authors: Coleman, J.A., Navratna, V., Yang, D.
PDB entry 6w2d: Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Classification: VIRAL PROTEIN
Source organism: Epstein-Barr virus (strain B95-8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2020-03-05
Authors: Liu, W., Cui, Y.X., Wang, C.Y., Li, Z.H., Gong, D.Y., Dai, X.H., Bi, G.Q., Sun, R., Zhou, Z.H.
PDB entry 6w2e: Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Classification: VIRAL PROTEIN
Source organism: Epstein-Barr virus (strain B95-8)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2020-03-05
Authors: Liu, W., Cui, Y.X., Wang, C.Y., Li, Z.H., Gong, D.Y., Dai, X.H., Bi, G.Q., Sun, R., Zhou, Z.H.
PDB entry 6w2g: Crystal Structure of Y188G Variant of the Internal UBA Domain of HHR23A in Monoclinic Unit Cell
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2020-03-05
Authors: Bowler, B.E., Zeng, B., Becht, D.C., Rothfuss, M., Sprang, S.R., Mou, T.-C.
PDB entry 6w2h: Crystal Structure of the Internal UBA Domain of HHR23A
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-03-05
Authors: Bowler, B.E., Zeng, B., Becht, D.C., Rothfuss, M., Sprang, S.R., Mou, T.-C.
PDB entry 6w2i: Crystal Structure of Y188G Variant of the Internal UBA Domain of HHR23A
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-03-05
Authors: Bowler, B.E., Zeng, B., Becht, D.C., Rothfuss, M., Sprang, S.R., Mou, T.-C.
PDB entry 6w2j: CPS1 bound to allosteric inhibitor H3B-374
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2020-03-05
Authors: Larsen, N.A., Nguyen, T.V.
PDB entry 6w2k: Crystal structure of laccase from Thermus thermophilus HB27 in reducing conditions (Na2,S2,O2, 20 min)
Classification: METAL BINDING PROTEIN, Oxidoreductase
Source organism: Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-03-06
Authors: Miranda-Blancas, R., Rudino-Pinera, E.
PDB entry 6w2l: Crystal structure of human dehydrodolichyl diphosphate synthase (NgBR/DHDDS) in complex with Mg and IPP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.306 Å
Deposited: 2020-03-06
Authors: Edani, B.H., Ha, Y., Sessa, W.C.
PDB entry 6w2m: Abortive ternary complex crystal structure of DNA polymerase Beta with 8OG-dC base pair at the primer terminus and flipped out dA
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.998 Å
Deposited: 2020-03-06
Authors: Batra, V.K., Wilson, S.H.
PDB entry 6w2n: Trypanosoma cruzi Malic Enzyme in complex with inhibitor (MEC009)
Classification: OXIDOREDUCTASE/Inhibitor
Source organism: Trypanosoma cruzi (strain CL Brener)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2020-03-06
Authors: Mercaldi, G.F., Fagundes, M., Faria, J.N., Cordeiro, A.T.
PDB entry 6w2o: Crystal structure of uroporphyrinogen III decarboxylate (hemE) from Stenotrophomonas maltophilia
Classification: LYASE
Source organism: Stenotrophomonas maltophilia (strain K279a)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-03-06
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6w2p: APE1 endonuclease product complex L104R
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2020-03-06
Authors: Freudenthal, B.D., Whitaker, A.M.
PDB entry 6w2q: Junction 34, DHR53-DHR4
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-03-08
Authors: Bick, M.J., Brunette, T.J., Baker, D.
PDB entry 6w2r: Junction 19, DHR54-DHR79
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.344 Å
Deposited: 2020-03-08
Authors: Bick, M.J., Brunette, T.J., Baker, D.
PDB entry 6w2s: Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
Classification: Ribosome/TRANSLATION
Source organism: Cricket paralysis virus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2020-03-08
Authors: Neupane, R., Pisareva, V., Rodriguez, C.F., Pisarev, A., Fernandez, I.S.
PDB entry 6w2t: Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
Classification: RIBOSOME
Source organism: Cricket paralysis virus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2020-03-08
Authors: Neupane, R., Pisareva, V., Rodriguez, C.F., Pisarev, A., Fernandez, I.S.
PDB entry 6w2u: Mayaro Virus glycoprotein E1 ectodomain and glycoportien E2 ectodomain asymmetric unit
Classification: VIRUS
Source organism: Mayaro virus (strain Brazil)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2020-03-08
Authors: Miller, A.S., Kuhn, R.J.
PDB entry 6w2v: Junction 23, DHR14-DHR18
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.399 Å
Deposited: 2020-03-08
Authors: Bick, M.J., Brunette, T.J., Baker, D.
PDB entry 6w2w: Junction 24, DHR14-DHR18
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2020-03-08
Authors: Bick, M.J., Brunette, T.J., Baker, D.
PDB entry 6w2x: CryoEM Structure of Inactive GABAB Heterodimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-03-08
Authors: Papasergi-Scott, M.M., Robertson, M.J., Skiniotis, G.
PDB entry 6w2y: CryoEM Structure of GABAB1b Homodimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-03-08
Authors: Papasergi-Scott, M.M., Robertson, M.J., Skiniotis, G.
PDB entry 6w2z: Crystal Structure of the Beta Lactamase Class A PenP from Bacillus subtilis in the Complex with the Non-beta- lactam Beta-lactamase Inhibitor Avibactam
Classification: HYDROLASE
Source organism: Bacillus subtilis (strain 168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-03-08
Authors: Kim, Y., Maltseva, N., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6w30: Protein Tyrosine Phosphatase 1B Bound to Amorphadiene
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-03-08
Authors: Sarkar, A., Kim, E.Y., Hongdusit, A., Sankaran, B., Fox, J.
PDB entry 6w32: Crystal structure of Sfh5
Classification: SIGNALING PROTEIN
Source organism: Saccharomyces cerevisiae (strain YJM789)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-03-08
Authors: Gulten, G., Khan, D., Aggarwal, A., Krieger, I., Sacchettini, J.C., Bankaitis, V.A.
PDB entry 6w33: Crystal Structure of Class A Beta-lactamase from Bacillus cereus in the Complex with the Beta-lactamase Inhibitor Clavulanate
Classification: HYDROLASE
Source organism: Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-03-08
Authors: Kim, Y., Maltseva, N., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6w34: Crystal Structure of Class A Beta-lactamase from Bacillus cereus
Classification: HYDROLASE
Source organism: Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-03-08
Authors: Kim, Y., Maltseva, N., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6w35: A new Autotaxin Inhibitor for the Treatment of Idiopathic Pulmonary Fibrosis: A Clinical Candidate Discovered Using DNA-Encoded Chemistry
Classification: LIPID BINDING PROTEIN
Source organism: Pan troglodytes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2020-03-09
Authors: Cuozzo, J.W.
PDB entry 6w36: Crystal structure of FAM46C
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.854 Å
Deposited: 2020-03-09
Authors: Shang, G.J., Zhang, X.W., Chen, H., Lu, D.F.
PDB entry 6w37: STRUCTURE OF THE SARS-CoV-2 ORF7A ENCODED ACCESSORY PROTEIN
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-03-09
Authors: Nelson, C.A., Minasov, G., Shuvalova, L., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6w38: Crystal structure of the FAM46C/Plk4 complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.48 Å
Deposited: 2020-03-09
Authors: Chen, H., Lu, D.F., Shang, G.J., Zhang, X.W.
PDB entry 6w39: Structure of unphosphorylated IRE1 in complex with G-1749
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.736 Å
Deposited: 2020-03-09
Authors: Ferri, E., Wang, W., Joachim, R., Mortara, K.
PDB entry 6w3a: Structure of unphosphorylated IRE1 in complex with G-7658
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.606 Å
Deposited: 2020-03-09
Authors: Ferri, E., Wang, W., Joachim, R., Mortara, K.
PDB entry 6w3b: Structure of apo unphosphorylated IRE1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2020-03-09
Authors: Wallweber, H., Mortara, K., Ferri, E., Rudolph, J., Wang, W.
PDB entry 6w3c: Structure of phosphorylated apo IRE1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-03-09
Authors: Wallweber, H., Mortara, K., Ferri, E., Wang, W., Rudolph, J.
PDB entry 6w3d: Rd1NTF2_05 with long sheet
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2020-03-09
Authors: Bick, M.J., Basanta, B., Sankaran, B., Baker, D.
PDB entry 6w3e: Structure of phosphorylated IRE1 in complex with G-0701
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.737 Å
Deposited: 2020-03-09
Authors: Ferri, E., Wang, W., Joachim, R., Mortara, K.
PDB entry 6w3f: Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2020-03-09
Authors: Bick, M.J., Basanta, B., Sankaran, B., Baker, D.
PDB entry 6w3g: Rd1NTF2_04 with long sheet
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2020-03-09
Authors: Bick, M.J., Basanta, B., Sankaran, B., Baker, D.
PDB entry 6w3h: Brain delivery of therapeutic proteins using an Fc fragment blood-brain barrier transport vehicle in mice and monkeys
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.38 Å
Deposited: 2020-03-09
Authors: Srivastava, A., Kariolis, M., Wells, R.
PDB entry 6w3i: Crystal structure of a FAM46C mutant in complex with Plk4
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.802 Å
Deposited: 2020-03-09
Authors: Chen, H., Shang, G.J., Lu, D.F., Zhang, X.W.
PDB entry 6w3j: Crystal structure of the FAM46C/Plk4/Cep192 complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.385 Å
Deposited: 2020-03-09
Authors: Chen, H., Lu, D.F., Shang, G.J., Zhang, X.W.
PDB entry 6w3k: Structure of unphosphorylated human IRE1 bound to G-9807
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2020-03-09
Authors: Lammens, A., Wang, W., Ferri, E., Rudolph, J.
PDB entry 6w3l: APE1 exonuclease substrate complex wild-type
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2020-03-09
Authors: Freudenthal, B.D., Whitaker, A.M.
PDB entry 6w3m: Solution NMR Structure of 5'UTR Stem Loop B in DENV4 Flavivirus.
Classification: RNA
Source organism: Dengue virus 4 Philippines/H241/1956
Experimental method: SOLUTION NMR
Deposited: 2020-03-09
Authors: Sharma, S., Varani, G., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6w3n: APE1 exonuclease substrate complex D148E
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2020-03-09
Authors: Freudenthal, B.D., Whitaker, A.M.
PDB entry 6w3o: Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with 4-methylisoleucine
Classification: SIGNALING PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2020-03-09
Authors: Khan, M.F., Machuca, M.A., Rahman, M.M., Roujeinikova, A.
PDB entry 6w3p: Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with beta-methylnorleucine
Classification: SIGNALING PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.383 Å
Deposited: 2020-03-09
Authors: Khan, M.F., Machuca, M.A., Rahman, M.M., Roujeinikova, A.
PDB entry 6w3q: APE1 exonuclease substrate complex L104R
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2020-03-09
Authors: Freudenthal, B.D., Whitaker, A.M.
PDB entry 6w3r: Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with 3-methylisoleucine
Classification: SIGNALING PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2020-03-09
Authors: Khan, M.F., Machuca, M.A., Rahman, M.M., Roujeinikova, A.
PDB entry 6w3s: Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with L-leucine
Classification: SIGNALING PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-03-09
Authors: Khan, M.F., Machuca, M.A., Rahman, M.M., Roujeinikova, A.
PDB entry 6w3t: Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with L-norvaline
Classification: SIGNALING PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-03-09
Authors: Khan, M.F., Machuca, M.A., Rahman, M.M., Roujeinikova, A.
PDB entry 6w3u: APE1 exonuclease substrate complex R237C
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-03-09
Authors: Freudenthal, B.D., Whitaker, A.M.
PDB entry 6w3v: Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with L-phenylalanine
Classification: SIGNALING PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2020-03-09
Authors: Khan, M.F., Machuca, M.A., Rahman, M.M., Roujeinikova, A.
PDB entry 6w3w: An enumerative algorithm for de novo design of proteins with diverse pocket structures
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-03-09
Authors: Bera, A.K., Basanta, B., Dimaio, F., Sankaran, B., Baker, D.
PDB entry 6w3x: Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with L-valine
Classification: SIGNALING PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-03-09
Authors: Khan, M.F., Machuca, M.A., Rahman, M.M., Roujeinikova, A.
PDB entry 6w3y: Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with L-alanine
Classification: SIGNALING PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2020-03-09
Authors: Khan, M.F., Machuca, M.A., Rahman, M.M., Roujeinikova, A.
PDB entry 6w3z: Crystal Structure of Brugia malayi Deoxyhypusine synthase (DHPS)
Classification: TRANSFERASE
Source organism: Brugia malayi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-03-09
Authors: Santiago, A.S., dos Reis, C.V., Ramos, P.Z., Klippel, H.A., Silva, S.F., Zanelli, C.F., Massirer, K.B., Arruda, P., Edwards, A.M., Counago, R.M., Structural Genomics Consortium (SGC)
PDB entry 6w40: An enumerative algorithm for de novo design of proteins with diverse pocket structures
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2020-03-09
Authors: Bera, A.K., Basanta, B., Sankaran, B., Baker, D.
PDB entry 6w41: Crystal structure of SARS-CoV-2 receptor binding domain in complex with human antibody CR3022
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.084 Å
Deposited: 2020-03-09
Authors: Yuan, M., Wu, N.C., Zhu, X.Y., Wilson, I.A.
PDB entry 6w42: HIV Integrase core domain in complex with inhibitor 2-(5-methyl-2-(2-(thiophen-2-yl)ethynyl)-1-benzofuran-3-yl)acetic acid
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2020-03-09
Authors: Gorman, M.A., Parker, M.W.
PDB entry 6w43: APE1 AP-endonuclease product complex R237C
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-03-10
Authors: Freudenthal, B.D., Whitaker, A.M.
PDB entry 6w44: Crystal structure of HAO1 in complex with indazole acid inhibitor - compound 4
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2020-03-10
Authors: Ferguson, A.D.
PDB entry 6w45: Crystal structure of HAO1 in complex with biaryl acid inhibitor - compound 3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-03-10
Authors: Ferguson, A.D.
PDB entry 6w46: Valine-Containing Collagen Peptide
Classification: BIOSYNTHETIC PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2020-03-10
Authors: Chenoweth, D.M., Melton, S.D.
PDB entry 6w47: Peptoid-Containing Collagen Peptide
Classification: BIOSYNTHETIC PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2020-03-10
Authors: Chenoweth, D.M., Melton, S.D.
PDB entry 6w49: Trypanosoma cruzi Malic Enzyme in complex with inhibitor (MEC010)
Classification: OXIDOREDUCTASE/Inhibitor
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-03-10
Authors: Mercaldi, G.F., Fagundes, M., Faria, J.N., Cordeiro, A.T.
PDB entry 6w4b: The crystal structure of Nsp9 RNA binding protein of SARS CoV-2
Classification: REPLICATION, VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2020-03-10
Authors: Tan, K., Kim, Y., Jedrzejczak, R., Maltseva, N., Endres, M., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6w4c: Crystal structure of HAO1 in complex with indazole acid inhibitor - compound 5
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-03-10
Authors: Ferguson, A.D.
PDB entry 6w4e: NMR-driven structure of KRAS4B-GTP homodimer on a lipid bilayer nanodisc
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-03-10
Authors: Lee, K., Fang, Z., Enomoto, M., Gasmi-Seabrook, G.M., Zheng, L., Marshall, C.B., Ikura, M.
PDB entry 6w4f: NMR-driven structure of KRAS4B-GDP homodimer on a lipid bilayer nanodisc
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-03-10
Authors: Lee, K., Fang, Z., Enomoto, M., Gasmi-Seabrook, G.M., Zheng, L., Marshall, C.B., Ikura, M.
PDB entry 6w4g: Hepatitis C virus polymerase NS5B with RO inhibitor for SAR studies
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Hepatitis C virus genotype 1b (isolate BK)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-03-10
Authors: Harris, S.F.
PDB entry 6w4h: 1.80 Angstrom Resolution Crystal Structure of NSP16 - NSP10 Complex from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-03-10
Authors: Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Wiersum, G., Godzik, A., Jaroszewski, L., Stogios, P.J., Skarina, T., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 6w4i: APE1 Y269A product complex with abasic DNA
Classification: LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-03-10
Authors: Freudenthal, B.D., Hoitsma, N.M.
PDB entry 6w4k: Crystal structure of Lysine Specific Demethylase 1 (LSD1) with CC-90011
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2020-03-11
Authors: Hosfield, D.J.
PDB entry 6w4l: The crystal structure of a single chain H2B-H2A histone chimera from Xenopus laevis
Classification: GENE REGULATION
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2020-03-11
Authors: Warren, C., Bonanno, J.B., Almo, S.C., Shechter, D.
PDB entry 6w4m: CRYSTAL STRUCTURE OF THE ADCC-POTENT, WEAKLY NEUTRALIZING HIV ENV CO-RECEPTOR BINDING SITE ANTIBODY N12-I2 FAB IN COMPLEX WITH HIV-1 CLADE A/E GP120 AND M48U1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-03-11
Authors: Tolbert, W.D., Gohain, N., Pazgier, M.
PDB entry 6w4n: Co-crystal structure of Pd_dinase with probe glycine-propargylglycine-AOMK
Classification: HYDROLASE
Source organism: Parabacteroides distasonis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.623 Å
Deposited: 2020-03-11
Authors: Xu, J.H., Solania, A., Wolan, D.W.
PDB entry 6w4o: CaMKII alpha-30 Cryo-EM reconstruction
Classification: SIGNALING PROTEIN, TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2020-03-11
Authors: Chao, L.H., Stratton, M.M.
PDB entry 6w4p: CaMKII alpha-30 Cryo-EM reconstruction - Class B
Classification: SIGNALING PROTEIN/TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2020-03-11
Authors: Chao, L.H., Stratton, M.M.
PDB entry 6w4q: Crystal structure of full-length tailspike protein 2 (TSP2, ORF211) ) from Escherichia coli O157:H7 bacteriophage CAB120
Classification: HYDROLASE
Source organism: Escherichia virus CBA120
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-03-11
Authors: Greenfield, J., Herzberg, O.
PDB entry 6w4r: Structure of Tdp1 catalytic domain in complex with inhibitor XZ633p
Classification: DNA BINDING PROTEIN, HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.819 Å
Deposited: 2020-03-11
Authors: Lountos, G.T., Zhao, X.Z., Kiselev, E., Tropea, J.E., Needle, D., Pommier, Y., Burke, T.R., Waugh, D.S.
PDB entry 6w4s: Structure of apo human ferroportin in lipid nanodisc
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-03-11
Authors: Billesboelle, C.B., Azumaya, C.M., Gonen, S., Powers, A., Kretsch, R.C., Schneider, S., Arvedson, T., Dror, R.O., Cheng, Y., Manglik, A.
PDB entry 6w4t: APE1 Y269A phosphorothioate substrate complex with abasic DNA
Classification: LYASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2020-03-11
Authors: Freudenthal, B.D., Hoitsma, N.M.
PDB entry 6w4u: Crystal structure of Triosephosphate isomerase from Stenotrophomonas maltophilia K279a
Classification: ISOMERASE
Source organism: Stenotrophomonas maltophilia (strain K279a)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-03-11
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 6w4v: Structure of anti-ferroportin Fab45D8
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-03-11
Authors: Billesboelle, C.B., Azumaya, C.M., Gonen, S., Powers, A., Kretsch, R.C., Schneider, S., Arvedson, T., Dror, R.O., Cheng, Y., Manglik, A.
PDB entry 6w4w: Crystal Structure of the Fab fragment of humanized 5c8 antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2020-03-11
Authors: Henderson, J.N., Mills, J.H., Simmons, C.R.
PDB entry 6w4x: Holocomplex of E. coli class Ia ribonucleotide reductase with GDP and TTP
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-03-11
Authors: Kang, G., Taguchi, A., Stubbe, J., Drennan, C.L.
PDB entry 6w4y: Structure of full-length human lambda-6A light chain JTO in complex with hydantoin stabilizer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2020-03-11
Authors: Yan, N.L., Morgan, G.J., Kelly, J.W.
PDB entry 6w4z: Galectin-8N terminal domain in complex with Methyl 3-O-[3-O-benzyloxy]-malonyl-beta-D-galactopyranoside
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2020-03-12
Authors: Patel, B., Kishor, C., Blanchard, H.
PDB entry 6w50: FACTOR XIA IN COMPLEX WITH THE INHIBITOR METHYL ((10R,14S)- 14-(4-(3-CHLORO-2,6-DIFLUOROPHENYL)-6-OXO-3,6-DIHYDRO- 1(2H)-PYRIDINYL)-10-METHYL-9-OXO-8,16- DIAZATRICYCLO[13.3.1.0~2,7~]NONADECA-1(19),2,4,6,15,17- HEXAEN-5-YL)CARBAMATE
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-03-12
Authors: Sheriff, S.
PDB entry 6w51: Structure of the antibody fragment H2 in complex with HLA-A*02:01/p53R175H
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.53 Å
Deposited: 2020-03-12
Authors: Wright, K.M., Gabelli, S.B.