LiteFold/PDB huggingface dataset:
PDB entry 8uxt: Acinetobacter baumannii Tse15 Rhs effector, toxin cleavage mutant (D1369N, D1391N)
Classification: TOXIN
Source organism: Acinetobacter baumannii AB307-0294
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.77 Å
Deposited: 2023-11-10
Authors: Hayes, B.K., Venugopal, H., McGowan, S.
PDB entry 8uxu: Cryo-EM structure of a bacterial nitrilase filament with a covalent adduct derived from benzonitrile hydrolysis
Classification: HYDROLASE
Source organism: Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-11-10
Authors: Aguirre-Sampieri, S., Casanal, A., Emsley, P., Garza-Ramos, G.
PDB entry 8uxv: Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-11
Authors: Billesboelle, C.B., Del Torrent, C.L., Manglik, A.
PDB entry 8uxw: Arp2/3 branch junction complex, ADP state
Classification: CYTOSOLIC PROTEIN
Source organism: Oryctolagus cuniculus; Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-11
Authors: Chavali, S.S., Chou, S.Z., Sindelar, C.V.
PDB entry 8uxx: Arp2/3 branch junction complex, BeFx state
Classification: CYTOSOLIC PROTEIN
Source organism: Oryctolagus cuniculus; Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-11
Authors: Chavali, S.S., Chou, S.Z., Sindelar, C.V.
PDB entry 8uxy: Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-11
Authors: Billesboelle, C.B., Del Torrent, C.L., Manglik, A.
PDB entry 8uxz: E. coli acetyl-CoA carboxylase, wide stacked local reconstruction, 3.20 Angstrom
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-11
Authors: Xu, X., Silva de Sousa, A., Boram, T.J., Jiang, W., Lohman, R.J.
PDB entry 8uy0: Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-11
Authors: Billesboelle, C.B., Del Torrent, C.L., Manglik, A.
PDB entry 8uy1: Methylenetetrahydrofolate reductase from Chaetomium thermophilum DSM 1495, Active (R) State
Classification: OXIDOREDUCTASE
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2023-11-12
Authors: Yamada, K., Mendoza, J., Koutmos, M.
PDB entry 8uy2: Methylenetetrahydrofolate reductase from Chaetomium thermophilum DSM 1495, AdoMet-bound, Inhibited (T) State
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2023-11-12
Authors: Yamada, K., Mendoza, J., Koutmos, M.
PDB entry 8uy3: Fem1B with FNIP1 and Tom20 fragment
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-11-12
Authors: Gee, C.L., Manford, A.G., McMinimy, R., Rape, M.
PDB entry 8uy4: Acinetobacter baumannii Tse15 Rhs effector
Classification: TOXIN
Source organism: Acinetobacter baumannii AB307-0294
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-11-13
Authors: Hayes, B.K., Venugopal, H., McGowan, S.
PDB entry 8uy5: [ZP] Self-assembling DNA crystal with expanded genetic code using C,A,T,G, Z and P nucleotides
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.562 Å
Deposited: 2023-11-13
Authors: Vecchioni, S., Sha, R., Ohayon, Y.P., Hernandez, C.
PDB entry 8uy6: Aquaporin Z with ALFA tag and bound to nanobody
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2023-11-13
Authors: Stover, L., Bahramimoghaddam, H., Wang, L., Zhou, M., Laganowsky, A.
PDB entry 8uy7: Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-11-13
Authors: Zeinert, R., Zhou, F., Cavalcanti Franco, P.H., Zoeller, J., Lessen, H., Iyer, A., Langer, J.D., Sodt, A.J., Storz, G., Matthies, D.
PDB entry 8uy8: Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 in C1
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-11-13
Authors: Zeinert, R., Zhou, F., Cavalcanti Franco, P.H., Zoeller, J., Lessen, H., Iyer, A., Langer, J.D., Sodt, A.J., Storz, G., Matthies, D.
PDB entry 8uy9: Magnesium transporter MgtA monomer from E. coli in 5 mM MgCl2
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2023-11-13
Authors: Zeinert, R., Zhou, F., Cavalcanti Franco, P.H., Zoeller, J., Lessen, H., Iyer, A., Langer, J.D., Sodt, A.J., Storz, G., Matthies, D.
PDB entry 8uya: Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATP
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2023-11-13
Authors: Zeinert, R., Zhou, F., Cavalcanti Franco, P.H., Zoeller, J., Lessen, H., Iyer, A., Langer, J.D., Sodt, A.J., Storz, G., Matthies, D.
PDB entry 8uyb: Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATPyS
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2023-11-13
Authors: Zeinert, R., Zhou, F., Cavalcanti Franco, P.H., Zoeller, J., Lessen, H., Iyer, A., Langer, J.D., Sodt, A.J., Storz, G., Matthies, D.
PDB entry 8uyc: Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ADP
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-11-13
Authors: Zeinert, R., Zhou, F., Cavalcanti Franco, P.H., Zoeller, J., Lessen, H., Iyer, A., Langer, J.D., Sodt, A.J., Storz, G., Matthies, D.
PDB entry 8uyd: The structure of the native cardiac thin filament troponin core in Ca2+-free state from the lower strand
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-11-13
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8uye: BtCoV-HKU5 5' proximal stem-loop 5, conformation 1
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2023-11-13
Authors: Kretsch, R.C., Xu, L., Zheludev, I.N., Zhou, X., Huang, R., Nye, G., Li, S., Zhang, K., Chiu, W., Das, R.
PDB entry 8uyf: Structure of nucleotide-free Pediculus humanus (Ph) PINK1 dimer
Classification: TRANSFERASE
Source organism: Pediculus humanus corporis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-11-13
Authors: Gan, Z.Y., Kirk, N.S., Leis, A., Komander, D.
PDB entry 8uyg: BtCoV-HKU5 5' proximal stem-loop 5, conformation 2
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2023-11-13
Authors: Kretsch, R.C., Xu, L., Zheludev, I.N., Zhou, X., Huang, R., Nye, G., Li, S., Zhang, K., Chiu, W., Das, R.
PDB entry 8uyh: Structure of AMP-PNP-bound Pediculus humanus (Ph) PINK1 dimer
Classification: TRANSFERASE
Source organism: Pediculus humanus corporis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-11-13
Authors: Gan, Z.Y., Kirk, N.S., Leis, A., Komander, D.
PDB entry 8uyi: Structure of ADP-bound and phosphorylated Pediculus humanus (Ph) PINK1 dimer
Classification: TRANSFERASE
Source organism: Pediculus humanus corporis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-11-13
Authors: Gan, Z.Y., Kirk, N.S., Leis, A., Komander, D.
PDB entry 8uyj: BtCoV-HKU5 5' proximal stem-loop 5, conformation 4
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.3 Å
Deposited: 2023-11-13
Authors: Kretsch, R.C., Xu, L., Zheludev, I.N., Zhou, X., Huang, R., Nye, G., Li, S., Zhang, K., Chiu, W., Das, R.
PDB entry 8uyk: MERS 5' proximal stem-loop 5, conformation 1
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2023-11-13
Authors: Kretsch, R.C., Xu, L., Zheludev, I.N., Zhou, X., Huang, R., Nye, G., Li, S., Zhang, K., Chiu, W., Das, R.
PDB entry 8uyl: MERS 5' proximal stem-loop 5, conformation 2
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2023-11-13
Authors: Kretsch, R.C., Xu, L., Zheludev, I.N., Zhou, X., Huang, R., Nye, G., Li, S., Zhang, K., Chiu, W., Das, R.
PDB entry 8uym: MERS 5' proximal stem-loop 5, conformation 3
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2023-11-13
Authors: Kretsch, R.C., Xu, L., Zheludev, I.N., Zhou, X., Huang, R., Nye, G., Li, S., Zhang, K., Chiu, W., Das, R.
PDB entry 8uyn: Fundamental Characterization of Chelated and Crystallized Actinium in a Macromolecular Host
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-13
Authors: Rupert, P.B., Strong, R.K.
PDB entry 8uyo: Structure of a recombinant human PNMA2 capsid
Classification: VIRUS LIKE PARTICLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-13
Authors: Wilkinson, M.E., Madigan, V., Zhang, Y., Zhang, F.
PDB entry 8uyp: SARS-CoV-1 5' proximal stem-loop 5
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2023-11-13
Authors: Kretsch, R.C., Xu, L., Zheludev, I.N., Zhou, X., Huang, R., Nye, G., Li, S., Zhang, K., Chiu, W., Das, R.
PDB entry 8uyq: Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-11-13
Authors: Billesboelle, C.B., Del Torrent, C.L., Manglik, A.
PDB entry 8uyr: Manganese-substituted DitZ from Rhodococcus Rhodochrous
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus rhodochrous
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-11-14
Authors: Liu, C., Chen, S., Rittle, J.
PDB entry 8uys: SARS-CoV-2 5' proximal stem-loop 5
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2023-11-14
Authors: Kretsch, R.C., Xu, L., Zheludev, I.N., Zhou, X., Huang, R., Nye, G., Li, S., Zhang, K., Chiu, W., Das, R.
PDB entry 8uyt: HBV T=4 capsid from HEK-293T cells
Classification: VIRUS
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-14
Authors: Bianchini, E.N., Wang, J.C.Y., Hu, J.
PDB entry 8uyu: HBV T=3 capsid from HEK-293T cells
Classification: VIRUS
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-14
Authors: Bianchini, E.N., Wang, J.C.Y., Hu, J.
PDB entry 8uyv: HBV T=4 3A mutant capsid from HEK-293T cells
Classification: VIRUS
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-11-14
Authors: Bianchini, E.N., Wang, J.C.Y., Hu, J.
PDB entry 8uyw: HBV T=3 3A mutant capsid from HEK-293T cells
Classification: VIRUS
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-14
Authors: Bianchini, E.N., Wang, J.C.Y., Hu, J.
PDB entry 8uyx: HBV Cp149 capsid protein (Wild-type control)
Classification: VIRUS
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-14
Authors: Bianchini, E.N., Wang, J.C.Y., Hu, J.
PDB entry 8uyy: HBV Cp149 capsid protein (Preassembled capsid incubated with triton X-100)
Classification: VIRUS
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-14
Authors: Bianchini, E.N., Wang, J.C.Y., Hu, J.
PDB entry 8uyz: HBV Cp149 capsid protein (HBV dimer co-assembled with triton X-100)
Classification: VIRUS
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-11-14
Authors: Bianchini, E.N., Wang, J.C.Y., Hu, J.
PDB entry 8uz0: Straight actin filament from Arp2/3 branch junction sample (ADP)
Classification: CYTOSOLIC PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-11-14
Authors: Chavali, S.S., Chou, S.Z., Sindelar, C.V.
PDB entry 8uz1: Straight actin filament from Arp2/3 branch junction sample (ADP-BeFx)
Classification: CYTOSOLIC PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-11-14
Authors: Chavali, S.S., Chou, S.Z., Sindelar, C.V.
PDB entry 8uz2: E. coli acetyl-CoA carboxylase, narrow helical local reconstruction, 3.18 Angstrom
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-11-14
Authors: Xu, X., Silva de Sousa, A., Boram, T.J., Jiang, W., Lohman, R.J.
PDB entry 8uz3: E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-14
Authors: Kimbrough, E.M., Dunham, C.M., Nguyen, H.A.
PDB entry 8uz4: Crystal Structure of macrophage migration inhibitory factor (MIF) from Trichomonas vaginalis (Apo, P41212 form)
Classification: CYTOKINE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-11-14
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8uz5: The structure of the native cardiac thin filament troponin core in Ca2+-free rotated state from the lower strand
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2023-11-14
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8uz6: The structure of the native cardiac thin filament troponin core in Ca2+-free tilted state from the lower strand
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2023-11-14
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8uz7: Crystal structure of a novel triose phosphate isomerase identified on the shrimp transcriptome
Classification: ISOMERASE
Source organism: Penaeus vannamei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-11-14
Authors: Sotelo-Mundo, R.R., Gomez-Yanes, A.C., Lopez-Zavala, A.A., Lopez-Garcia, J.A., Ochoa-Leyva, A.
PDB entry 8uz8: Crystal Structure of CiaD from Campylobacter jejuni (C-terminal fragment, Orthorhombic P form)
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-11-14
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8uz9: Fundamental Characterization of Chelated and Crystallized Actinium in a Macromolecular Host
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-11-14
Authors: Rupert, P.B., Strong, R.K.
PDB entry 8uza: Cryo-EM structure of GeoCas9 in complex with sgRNA and target DNA
Classification: HYDROLASE/RNA/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-11-14
Authors: Eggers, A.R., Soczek, K.M., Tuck, O.T., Doudna, J.A.
PDB entry 8uzb: Cryo-EM structure of iGeoCas9 in complex with sgRNA and target DNA
Classification: HYDROLASE/RNA/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-11-14
Authors: Eggers, A.R., Soczek, K.M., Tuck, O.T., Doudna, J.A.
PDB entry 8uzc: Structure of UT14 Fab in complex with the head domain of H3 (A/Singapore/INFIMH-16-0019/2016)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-11-14
Authors: Park, J., Georgiou, G.
PDB entry 8uzd: The structure of IpCS3, a theobromine methyltransferase from Yerba Mate
Classification: PLANT PROTEIN
Source organism: Ilex paraguariensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.721 Å
Deposited: 2023-11-14
Authors: Hernandez Garcia, A., Nair, S.K.
PDB entry 8uze: Crystal structure of chimeric bat coronavirus BANAL-20-236 RBD complexed with chimeric mouse ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.03 Å
Deposited: 2023-11-15
Authors: Zhang, W., Shi, K., Aihara, H., Li, F.
PDB entry 8uzf: Crystal structure of chimeric RaTG13 RBD complexed with chimeric mouse ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Bat coronavirus RaTG13; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.283 Å
Deposited: 2023-11-15
Authors: Zhang, W., Shi, K., Aihara, H., Li, F.
PDB entry 8uzg: E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-11-15
Authors: Kimbrough, E.M., Dunham, C.M., Nguyen, H.A.
PDB entry 8uzh: SUMO fused Trehalose Synthase (TreS) of Mycobacterium tuberculosis
Classification: SUGAR BINDING PROTEIN
Source organism: Mycobacterium tuberculosis; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-11-15
Authors: Pathirage, R., Ronning, D.R.
PDB entry 8uzi: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (betaine bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-11-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8uzj: Alpha7-nicotinic acetylcholine receptor bound to epibatidine and ivermectin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-11-15
Authors: Burke, S.M., Noviello, C.M., Hibbs, R.E.
PDB entry 8uzk: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (NADP+ bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-11-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8uzl: Designed Transmembrane beta-barrel- TMB10_163
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-11-15
Authors: Bera, A.K., Lemma, S.B., Kang, A., Baker, D.
PDB entry 8uzm: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (NADPH bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8uzn: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (AMP bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-11-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8uzo: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (ADP bound)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-15
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8uzp: Crystal Structure of the Computationally Designed Influenza Hemagglutinin Epitope Scaffold stem_mimetic_01 bound by Antibody CR9501
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.711 Å
Deposited: 2023-11-16
Authors: Harshbarger, W., Malito, E.
PDB entry 8uzt: Mitochondrial single-stranded binding protein bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-11-16
Authors: Riccio, A.A., Pedersen, L.C., Bouvette, J., Borgnia, J.M., Copeland, W.C.
PDB entry 8uzu: Crystal structure of Shewanella benthica Group 1 truncated hemoglobin L80A C51S C71S variant
Classification: HEME-BINDING PROTEIN
Source organism: Shewanella benthica KT99
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-11-16
Authors: Schultz, T.D., Martinez, J.E., Siegler, M.A., Schlessman, J.L., Lecomte, J.T.J.
PDB entry 8uzv: Structure of TDP1 catalytic domain complexed with compound IB02
Classification: DNA BINDING PROTEIN,HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.846 Å
Deposited: 2023-11-16
Authors: Lountos, G.T., Zhao, X.Z., Barakat, I., Wang, W., Agama, K., Al Mahmud, M.R., Pommier, Y., Burke Jr., T.R.
PDB entry 8uzw: Selenocysteine synthase- SelA
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2023-11-16
Authors: Balasco Serrao, V.H., Minari, K., Pereira, H.M., Thiemann, O.H.
PDB entry 8uzx: The structure of the native cardiac thin filament troponin core in Ca2+-bound fully activated state from the upper strand
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.4 Å
Deposited: 2023-11-16
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8uzy: The structure of the native cardiac thin filament troponin core in Ca2+-bound partially activated state from the upper strand
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-11-16
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8uzz: Structure of TDP1 catalytic domain complexed with compound IB03
Classification: DNA BINDING PROTEIN,HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-11-16
Authors: Lountos, G.T., Zhao, X.Z., Barakat, I., Wang, W., Agama, K., Al Mahmud, M.R., Pommier, Y., Burke Jr., T.R.
PDB entry 8v00: AaegOR10 apo structure
Classification: MEMBRANE PROTEIN
Source organism: Aedes aegypti; Apocrypta bakeri
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-11-16
Authors: Zhao, J., del Marmol, J.
PDB entry 8v01: The structure of the native cardiac thin filament troponin core in Ca2+-bound fully activated state 1 from the lower strand
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2023-11-16
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8v02: AaegOR10 structure bound to o-cresol
Classification: MEMBRANE PROTEIN
Source organism: Aedes aegypti; Apocrypta bakeri
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-11-16
Authors: Zhao, J., del Marmol, J.
PDB entry 8v03: E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-11-16
Authors: Kimbrough, E.M., Dunham, C.M., Nguyen, H.A.
PDB entry 8v04: High resolution TMPRSS2 structure following acylation by nafamostat
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-11-16
Authors: Fraser, B.J., Dong, A., Kutera, M., Seitova, A., Li, Y., Hutchinson, A., Edwards, A., Benard, F., Levon, H., Arrowsmith, C.
PDB entry 8v05: Crystal structure of mouse PLD3
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-11-17
Authors: Yuan, M., Zhu, X., Wilson, I.A.
PDB entry 8v06: Crystal structure of mouse PLD3 co-crystallized with 5'Pi-ssDNA for 9 days
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-11-17
Authors: Yuan, M., Wilson, I.A.
PDB entry 8v07: Crystal structure of mouse PLD3 co-crystallized with 5'Pi-ssDNA for 30 days
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-11-17
Authors: Yuan, M., Wilson, I.A.
PDB entry 8v08: Crystal structure of human PLD4 co-crystallized with 5'Pi-ssDNA
Classification: HYDROLASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-11-17
Authors: Yuan, M., Wilson, I.A.
PDB entry 8v09: Crystal Structure of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference with PGH
Classification: ISOMERASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-11-17
Authors: Perez-Nino, J.A., Rodriguez-Romero, A., Guerra-Borrego, Y., Fernandez-Velasco, D.A.
PDB entry 8v0a: Crystal Structure of the worst case of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood with PGH
Classification: ISOMERASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-11-17
Authors: Perez-Nino, J.A., Rodriguez-Romero, A., Guerra-Borrego, Y., Fernandez-Velasco, D.A.
PDB entry 8v0b: Structure of TDP1 catalytic domain complexed with compound IB05
Classification: DNA BINDING PROTEIN,HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-11-17
Authors: Lountos, G.T., Zhao, X.Z., Barakat, I., Wang, W., Agama, K., Al Mahmud, M.R., Pommier, Y., Burke Jr., T.R.
PDB entry 8v0c: Structure of TDP1 catalytic domain complexed with compound IB06
Classification: DNA BINDING PROTEIN,HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-11-17
Authors: Lountos, G.T., Zhao, X.Z., Barakat, I., Wang, W., Agama, K., Al Mahmud, M.R., Pommier, Y., Burke Jr., T.R.
PDB entry 8v0d: Ubch5B-RING3 of MIB1 fusion structure
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-11-17
Authors: Cao, R., Blacklow, S.C.
PDB entry 8v0e: ANK repeat of MIB1
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-11-17
Authors: Cao, R., Blacklow, S.C.
PDB entry 8v0f: Cryo-EM structure of the unliganded hexameric prenyltransferase in bifunctional copalyl diphosphate synthase from Penicillium fellutanum with an open conformation
Classification: TRANSFERASE
Source organism: Penicillium fellutanum ATCC 48694
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-11-17
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 8v0g: plasmodium falciparum Niemann-Pick type C1-related protein form I
Classification: MEMBRANE PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-11-17
Authors: Zhang, Z., Lyu, M.
PDB entry 8v0h: Structural characterization of zika virus NS2B by NMR and RosettaMP
Classification: VIRAL PROTEIN
Source organism: Zika virus
Experimental method: SOLUTION NMR
Deposited: 2023-11-17
Authors: Penna, B.R., Gomes-Neto, F., Anobom, C.D., Valente, A.P.
PDB entry 8v0i: The structure of the native cardiac thin filament troponin core in Ca2+-bound fully activated state 2 from the lower strand
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2023-11-17
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8v0j: Structure of the complex between Human LIAS and H-protein in the presence of s-adenosyl-l-methionine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2023-11-17
Authors: Esakova, O.A., Warui, D.M., Neti, S.S., Alumasa, J.N., Booker, S.J.
PDB entry 8v0k: The structure of the native cardiac thin filament troponin core in Ca2+-bound partially activated state from the lower strand
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2023-11-17
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8v0l: SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 1 (S-RRAR-Omicron-XBB.1.16)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0m: SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 2 (S-RRAR-Omicron-XBB.1.16)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0n: SARS-CoV-2 Omicron-XBB.1.16 3-RBD-down Spike Protein Trimer 3 (S-RRAR-Omicron-XBB.1.16)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0o: SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.16)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0p: SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.16)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0q: SARS-CoV-2 Omicron-XBB.1.16 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.16)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0r: SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-XBB.1.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0s: SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-XBB.1.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0t: SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-XBB.1.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0u: SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 4 (S-GSAS-Omicron-XBB.1.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0v: SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0w: SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0x: SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-11-17
Authors: Zhang, Q.E., Acharya, P.
PDB entry 8v0y: The structure of the native cardiac thin filament troponin core in Ca2+-free state from the upper strand activated by the C1-domain of cardiac myosin binding protein C
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2023-11-17
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8v0z: HIV-1 Integrase F185H W131C Complexed with Allosteric Inhibitor BI-D
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 4.56 Å
Deposited: 2023-11-18
Authors: Montermoso, S., Gupta, K., Eilers, G., Bushman, F.D., Van Duyne, G.D.
PDB entry 8v10: Structure of a Saccharomyces cerevisiae Mps1 peptide bound to dwarf Ndc80 Complex
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2023-11-19
Authors: Zahm, J.A., Harrison, S.C.
PDB entry 8v11: Structure of a Saccharomyces cerevisiae Ipl1 peptide Bound to dwarf Ndc80 complex
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.95 Å
Deposited: 2023-11-19
Authors: Zahm, J.A., Harrison, S.C.
PDB entry 8v12: plasmodium falciparum Niemann-Pick type C1-related protein form II
Classification: MEMBRANE PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2023-11-19
Authors: Zhang, Z., Lyu, M.
PDB entry 8v13: Crystal structure of Black mamba toxin in complex with Centi-SNX-B03 antibody
Classification: ANTITOXIN/IMMUNE SYSTEM
Source organism: Dendraspis polylepis polylepis; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-19
Authors: Pletnev, S., Glanville, J., Kwong, P.D.
PDB entry 8v14: Structure of NRAP-1 and its role in NMDAR signaling
Classification: SIGNALING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-11-19
Authors: Whitby, F.G., Goodell, D.J., Maricq, A.V., Hill, C.P.
PDB entry 8v15: Human SIRT3 bound to p53-AMC peptide, Carba-NAD, and Honokiol
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-11-19
Authors: Chakrabarti, R., Ghosh, A., Guan, X., Upadhyay, A., Dumpati, R.K., Munshi, S., Roy, S., Chall, S., Rahnamoun, A., Reverdy, C., Errasti, G., Delacroix, T.
PDB entry 8v16: Esterase with a monomeric cooperative, hysteresis or allokairy
Classification: HYDROLASE
Source organism: uncultured proteobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-11-19
Authors: Guzzo, C.R., Vinces, T.G.C., Visnardi, A.B.
PDB entry 8v17: HIV-CA Disulfide linked Hexamer with inhibitor bound - exploration of a benzothiazole
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-11-19
Authors: Goldstone, D.C., Walsham, L.J.
PDB entry 8v1f: TMPRSS2 complexed with the noncovalent inhibitor 6-amidino-2-napthol
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2023-11-20
Authors: Fraser, B.J., Dong, A., Kutera, M., Seitova, A., Li, Y., Hutchinson, A., Edwards, A., Benard, F., Halabelian, L., Arrowsmith, C., Structural Genomics Consortium (SGC)
PDB entry 8v1g: plasmodium falciparum Niemann-Pick type C1-related protein bound with MMV009108
Classification: MEMBRANE PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-11-20
Authors: Zhang, Z., Lyu, M.
PDB entry 8v1h: Crystal structure of human pre-mascRNA
Classification: RNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-11-20
Authors: Skeparnias, I., Zhang, J.
PDB entry 8v1i: Crystal structure of human mascRNA
Classification: RNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-11-20
Authors: Skeparnias, I., Zhang, J.
PDB entry 8v1j: Structure of an allelic variant of Puccinia graminis f. sp. tritici (Pgt) effector AvrSr27 (AvrSr27-1)
Classification: METAL BINDING PROTEIN
Source organism: Puccinia graminis f. sp. tritici
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41596 Å
Deposited: 2023-11-20
Authors: Outram, M.A., Williams, S.J., Ericsson, D.J.
PDB entry 8v1k: Crystal structure of outer membrane lipoprotein carrier protein (LolA) from Francisella tularensis
Classification: LIPID TRANSPORT
Source organism: Francisella tularensis subsp. tularensis SCHU S4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8v1l: Crystal structure of the NTF2L domain of human G3BP1 in complex with small molecule
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2023-11-20
Authors: Hughes, M.P., Taylor, J.P.
PDB entry 8v1n: Cryo-EM structure of tau filaments made from jR2R3-P301L peptides induced with heparin
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-11-20
Authors: Vigers, M., Han, S.
PDB entry 8v1o: Crystal structure of IRAK4 kinase domain with compound 4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2023-11-21
Authors: Weiss, M.M., Zheng, X., Browne, C.M., Campbell, V., Chen, D., Enerson, B., Fei, X., Huang, X., Klaus, C.R., Li, H., Mayo, M., McDonald, A.A., Paul, A., Sharma, K., Shi, Y., Slavin, A., Walter, D.M., Yuan, K., Zhang, Y., Zhu, X., Kelleher, J., Ji, N., Walker, D., Mainolfi, N.
PDB entry 8v1p: CRYSTAL STRUCTURE OF GID4 IN COMPLEX WITH UBF9092
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-11-21
Authors: Dong, C., Dong, A., Calabrese, M., Wang, F., Owen, D., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
PDB entry 8v1q: Herpes simplex virus 1 polymerase holoenzyme bound to DNA in both open/closed conformations
Classification: TRANSFERASE/DNA
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-21
Authors: Pan, J., Abraham, J., Coen, D.M., Shankar, S., Yang, P., Hogle, J.
PDB entry 8v1r: Herpes simplex virus 1 polymerase holoenzyme bound to DNA and DTTP in closed conformation
Classification: TRANSFERASE/DNA
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-11-21
Authors: Pan, J., Abraham, J., Coen, D.M., Shankar, S., Yang, P., Hogle, J.
PDB entry 8v1s: Herpes simplex virus 1 polymerase holoenzyme bound to mismatched DNA in editing conformation
Classification: TRANSFERASE/DNA
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-11-21
Authors: Pan, J., Abraham, J., Coen, D.M., Shankar, S., Yang, P., Hogle, J.
PDB entry 8v1t: Herpes simplex virus 1 polymerase holoenzyme bound to DNA and acyclovir triphosphate in closed conformation
Classification: TRANSFERASE/DNA
Source organism: Human alphaherpesvirus 1 strain KOS; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-11-21
Authors: Pan, J., Abraham, J., Coen, D.M., Shankar, S., Yang, P., Hogle, J.
PDB entry 8v1u: Human DNA Ligase I F872A bound to adenylated nicked DNA with a 5' terminal ribonucleotide
Classification: LIGASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-21
Authors: Tumbale, P.P., Williams, R.S.
PDB entry 8v1v: Human DNA Ligase I F872L bound to adenylated nicked DNA
Classification: LIGASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-11-21
Authors: Tumbale, P.P., Williams, R.S.
PDB entry 8v1w: Human DNA Ligase I F872A bound to adenylated nicked DNA
Classification: LIGASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-21
Authors: Tumbale, P.P., Williams, R.S.
PDB entry 8v1x: Crystal structure of polyketide synthase (PKS) thioreductase domain from Streptomyces coelicolor
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-11-21
Authors: Pereira, J.H., Dan, Q., Keasling, J., Adams, P.D.
PDB entry 8v1y: Composite map of AMPylated GlnA bound to hinT
Classification: LIGASE/HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-11-21
Authors: Han, Y., Sreelatha, A., Gonzalez, A., Chen, Z.
PDB entry 8v22: GlnA dodecamer with AMPylation
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-11-21
Authors: Han, Y., Sreelatha, A., Gonzalez, A., Chen, Z.
PDB entry 8v23: Crystal structure of HIV-1 capsid N-terminal domain in the presence of Lenacapavir
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-21
Authors: Briganti, L., Kvaratskhelia, M.
PDB entry 8v24: LapB cytoplasmic domain in complex with LpxC
Classification: PROTEIN BINDING
Source organism: Escherichia coli CFT073
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-11-21
Authors: Mi, W., Shu, S.
PDB entry 8v25: H2BK120ub-modified nucleosome ubiquitin position 1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-11-21
Authors: Hicks, C.W., Wolberger, C.
PDB entry 8v26: H2BK120ub-modified nucleosome ubiquitin position 2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-11-21
Authors: Hicks, C.W., Wolberger, C.
PDB entry 8v27: H2BK120ub-modified nucleosome ubiquitin position 3
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2023-11-21
Authors: Hicks, C.W., Wolberger, C.
PDB entry 8v28: H2BK120ub-modified nucleosome ubiquitin position 4
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-11-22
Authors: Hicks, C.W., Wolberger, C.
PDB entry 8v29: Cryo-EM structure of human type I OSM receptor complex: model for full extracellular assembly
Classification: CYTOKINE/RECEPTOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2023-11-22
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8v2a: Cryo-EM structure of human type I OSM receptor complex: model for assembly core region
Classification: CYTOKINE/RECEPTOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2023-11-22
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8v2b: Cryo-EM structure of mouse type II OSM receptor complex: model for full extracellular assembly
Classification: CYTOKINE/RECEPTOR
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-11-22
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8v2c: Cryo-EM structure of mouse type II OSM receptor complex: model for assembly core region
Classification: CYTOKINE/RECEPTOR
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-11-22
Authors: Zhou, Y., Franklin, M.C.
PDB entry 8v2d: Computational Designed Nanocage O43_129
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.77 Å
Deposited: 2023-11-22
Authors: Weidle, C., Kibler, R.D.
PDB entry 8v2e: Crystal structure of B055 scaffold boost immunogen in complex with a mature 10E8 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-11-22
Authors: Cho, S.Y., Wilson, I.A.
PDB entry 8v2f: Crystal structure of IRAK4 kinase domain with compound 9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-11-22
Authors: Weiss, M.M., Zheng, X., Browne, C.M., Campbell, V., Chen, D., Enerson, B., Fei, X., Huang, X., Klaus, C.R., Li, H., Mayo, M., McDonald, A.A., Paul, A., Sharma, K., Shi, Y., Slavin, A., Walter, D.M., Yuan, K., Zhang, Y., Zhu, X., Kelleher, J., Ji, N., Walker, D., Mainolfi, N.
PDB entry 8v2g: Cryo-EM structure of the KCa2.2 channel in apo state
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-11-22
Authors: Nam, Y.W., Zhang, M.
PDB entry 8v2h: Cryo-EM structure of the KCa2.2 channel bound to inhibitor AP14145.
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-22
Authors: Nam, Y.W., Zhang, M.
PDB entry 8v2j: Structure of alpha1B and betaI/IVb microtubule bound to GDP
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-11-22
Authors: Zehr, E.A., Roll-Mecak, A.
PDB entry 8v2k: Proteus vulgaris tryptophan indole-lyase complexed with L-alanine
Classification: LYASE
Source organism: Proteus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-11-22
Authors: Phillips, R.S.