LiteFold/PDB huggingface dataset:
PDB entry 3d26: Norwalk P domain A-trisaccharide complex
Classification: VIRAL PROTEIN
Source organism: Norwalk virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-05-07
Authors: Hegde, R., Bu, W.
PDB entry 3d27: E. coli methionine aminopeptidase with Fe inhibitor W29
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-07
Authors: Ye, Q.Z., Chai, S., He, H.Z.
PDB entry 3d28: Crystal structure of hcv ns5b polymerase with a novel benzisothiazole inhibitor
Classification: TRANSFERASE
Source organism: Hepatitis C virus (isolate BK)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-05-07
Authors: Han, Q., Showalter, R.E., Zhao, Q., Kissinger, C.R.
PDB entry 3d29: Proteasome Inhibition by Fellutamide B
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-05-07
Authors: Groll, M., Hines, J., Fahnestock, M., Crews, M.C.
PDB entry 3d2a: Structure of 1-17A4, a thermostable mutant of Bacillus subtilis lipase obtained through directed evolution
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2008-05-08
Authors: Sankaranarayanan, R., Kamal, M.Z.
PDB entry 3d2b: Structure of 2D9, a thermostable mutant of Bacillus subtilis lipase obtained through directed evolution
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2008-05-08
Authors: Sankaranarayanan, R., Kamal, M.Z.
PDB entry 3d2c: Structure of 4D3, a thermostable mutant of Bacillus subtilis lipase obtained through directed evolution
Classification: HYDROLASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2008-05-08
Authors: Sankaranarayanan, R., Kamal, M.Z.
PDB entry 3d2d: Structure of berberine bridge enzyme in complex with (S)-reticuline
Classification: OXIDOREDUCTASE
Source organism: Eschscholzia californica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.796 Å
Deposited: 2008-05-08
Authors: Winkler, A., Lyskowski, A., Macheroux, P., Gruber, K.
PDB entry 3d2e: Crystal structure of a complex of Sse1p and Hsp70, Selenomethionine-labeled crystals
Classification: CHAPERONE
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2008-05-08
Authors: Polier, S., Bracher, A.
PDB entry 3d2f: Crystal structure of a complex of Sse1p and Hsp70
Classification: CHAPERONE
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-05-08
Authors: Polier, S., Bracher, A.
PDB entry 3d2g: Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch
Classification: RNA
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2008-05-08
Authors: Thore, S.
PDB entry 3d2h: Structure of berberine bridge enzyme from Eschscholzia californica, monoclinic crystal form
Classification: OXIDOREDUCTASE
Source organism: Eschscholzia californica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2008-05-08
Authors: Winkler, A., Lyskowski, A., Macheroux, P., Gruber, K.
PDB entry 3d2i: Crystal structure of mouse Aurora A (Asn186->Gly, Lys240->Arg, Met302->Leu) in complex with 1-{5-[2-(1-methyl-1H-pyrazolo[4,3-d]pyrimidin-7-ylamino)-ethyl]-thiazol-2-yl}-3-(3-trifluoromethyl-phenyl)-urea
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-05-08
Authors: Oslob, J.D., Yu, C., Romanowski, M.J.
PDB entry 3d2j: Structure of berberine bridge enzyme from Eschscholzia californica, tetragonal crystal form
Classification: OXIDOREDUCTASE
Source organism: Eschscholzia californica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2008-05-08
Authors: Winkler, A., Lyskowski, A., Macheroux, P., Gruber, K.
PDB entry 3d2k: Crystal structure of mouse Aurora A (Asn186->Gly, Lys240->Arg, Met302->Leu) in complex with [7-(2-{2-[3-(3-chloro-phenyl)-ureido]-thiazol-5-yl}-ethylamino)-pyrazolo[4,3-d]pyrimidin-1-yl]-acetic acid
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-05-08
Authors: Elling, R.A., Oslob, J.D., Yu, C., Romanowski, M.J.
PDB entry 3d2l: Crystal structure of SAM-dependent methyltransferase (ZP_00538691.1) from EXIGUOBACTERIUM SP. 255-15 at 1.90 A resolution
Classification: TRANSFERASE
Source organism: Exiguobacterium sibiricum 255-15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-08
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3d2m: Crystal structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and L-glutamate
Classification: TRANSFERASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2008-05-08
Authors: Shi, D., Min, L., Jin, Z., Allewell, N.M., Tuchman, M.
PDB entry 3d2n: Crystal structure of MBNL1 tandem zinc finger 1 and 2 domain
Classification: METAL BINDING, RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-05-08
Authors: Teplova, M., Patel, D.J.
PDB entry 3d2o: Crystal Structure of Manganese-metallated GTP Cyclohydrolase Type IB
Classification: HYDROLASE, BIOSYNTHETIC PROTEIN
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2008-05-08
Authors: Swairjo, M.A.
PDB entry 3d2p: Crystal structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and L-arginine
Classification: TRANSFERASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2008-05-08
Authors: Shi, D., Min, L., Jin, Z., Allewell, N.M., Tuchman, M.
PDB entry 3d2q: Crystal structure of MBNL1 tandem zinc finger 3 and 4 domain
Classification: METAL BINDING, RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-05-08
Authors: Teplova, M., Patel, D.J.
PDB entry 3d2r: Crystal structure of pyruvate dehydrogenase kinase isoform 4 in complex with ADP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2008-05-08
Authors: Kato, M., Wynn, R.M., Chuang, L.C., Tso, S.-C., Li, J., Chuang, D.T.
PDB entry 3d2s: Crystal structure of MBNL1 tandem zinc finger 3 and 4 domain in complex with CGCUGU RNA
Classification: METAL BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-05-08
Authors: Teplova, M., Patel, D.J.
PDB entry 3d2t: Human transthyretin (ttr) complexed with diflunisal
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2008-05-08
Authors: Palaninathan, S.K., Kelly, J.W., Sacchettini, J.C.
PDB entry 3d2u: Structure of UL18, a Peptide-Binding Viral MHC Mimic, Bound to a Host Inhibitory Receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human herpesvirus 5; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2008-05-08
Authors: Yang, Z., Bjorkman, P.J.
PDB entry 3d2v: Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate
Classification: RNA
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-05-09
Authors: Thore, S., Frick, C., Ban, N.
PDB entry 3d2w: Crystal structure of mouse TDP-43 RRM2 domain in complex with DNA
Classification: DNA/RNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2008-05-09
Authors: Kuo, P.H., Yuan, H.S.
PDB entry 3d2x: Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine pyrophosphate
Classification: RNA
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-05-09
Authors: Thore, S., Frick, C., Ban, N.
PDB entry 3d2y: Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the substrate anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys
Classification: HYDROLASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2008-05-09
Authors: Kerff, F., Petrella, S., Herman, R., Sauvage, E., Mercier, F., Luxen, A., Frere, J.M., Joris, B., Charlier, P.
PDB entry 3d2z: Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the product L-Ala-D-gamma-Glu-L-Lys
Classification: HYDROLASE
Source organism: Escherichia coli str. K12 substr. MG1655; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-09
Authors: Kerff, F., Petrella, S., Herman, R., Sauvage, E., Mercier, F., Luxen, A., Frere, J.M., Joris, B., Charlier, P.
PDB entry 3d30: Structure of an expansin like protein from Bacillus Subtilis at 1.9A resolution
Classification: PEPTIDOGLYCAN-BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-09
Authors: Kerff, F., Petrella, S., Herman, R., Sauvage, E., Joris, B., Charlier, P.
PDB entry 3d31: ModBC from Methanosarcina acetivorans
Classification: TRANSPORT PROTEIN
Source organism: Methanosarcina acetivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2008-05-09
Authors: Gerber, S., Comellas-Bigler, M., Locher, K.P.
PDB entry 3d32: Complex of GABA(A) receptor-associated protein (GABARAP) with a synthetic peptide
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2008-05-09
Authors: Weiergraeber, O.H., Stangler, T., Willbold, D.
PDB entry 3d33: Crystal structure of a duf3244 family protein with an immunoglobulin-like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc 8482 at 1.70 A resolution
Classification: UNKNOWN FUNCTION
Source organism: Bacteroides vulgatus ATCC 8482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-05-09
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3d34: Structure of the F-spondin domain of mindin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-05-09
Authors: Li, Y., Mariuzza, R.A.
PDB entry 3d36: How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the Inhibitor Sda
Classification: Transferase/Transferase inhibitor
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2008-05-09
Authors: Bick, M.J., Lamour, V., Rajashankar, K.R., Gordiyenko, Y., Robinson, C.V., Darst, S.A.
PDB entry 3d37: The crystal structure of the tail protein from Neisseria meningitidis MC58
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Neisseria meningitidis MC58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-05-09
Authors: Zhang, R., Li, H., Bargassa, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3d38: Crystal structure of new trigonal form of photosynthetic reaction center from Blastochloris viridis. Crystals grown in microfluidics by detergent capture.
Classification: PHOTOSYNTHESIS
Source organism: Blastochloris viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2008-05-09
Authors: Li, L., Nachtergaele, S.H.M., Seddon, A.M., Tereshko, V., Ponomarenko, N., Ismagilov, R.F., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)
PDB entry 3d39: The complex between TCR A6 and human Class I MHC HLA-A2 with the modified HTLV-1 TAX (Y5(4-fluoroPhenylalanine)) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2008-05-09
Authors: Borbulevych, O.Y., Clemens, J.R., Baker, B.M.
PDB entry 3d3a: Crystal structure of a beta-galactosidase from Bacteroides thetaiotaomicron
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2008-05-09
Authors: Palani, K., Kumaran, D., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3d3b: Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2008-05-09
Authors: Luo, X., Wahl, M.C.
PDB entry 3d3c: Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-05-09
Authors: Luo, X., Wahl, M.C.
PDB entry 3d3d: Bacteriophage lambda lysozyme complexed with a chitohexasaccharide
Classification: HYDROLASE
Source organism: Enterobacteria phage lambda
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-05-09
Authors: Leung, A.K.W., Berghuis, A.M.
PDB entry 3d3e: Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) in Complex with Benzamide Inhibitor
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-05-09
Authors: Wang, Z., Sudom, A., Liu, J., Walker, N.P.
PDB entry 3d3f: Crystal Structure of Yvgn and cofactor NADPH from Bacillus subtilis
Classification: OXIDOREDUCTASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-05-10
Authors: Zhou, Y.F., Lei, J., Su, X.D.
PDB entry 3d3h: Crystal structure of a complex of the peptidoglycan glycosyltransferase domain from Aquifex aeolicus and neryl moenomycin A
Classification: TRANSFERASE/ANTIBIOTIC
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2008-05-11
Authors: Yuan, Y., Sliz, P., Walker, S.
PDB entry 3d3i: Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2008-05-12
Authors: Kurakata, Y., Uechi, A., Yoshida, H., Kamitori, S., Sakano, Y., Nishikawa, A., Tonozuka, T.
PDB entry 3d3j: Crystal structure of human Edc3p
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-12
Authors: Ling, S.H.M.
PDB entry 3d3k: Crystal structure of human Edc3p
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-12
Authors: Ling, S.H.M.
PDB entry 3d3l: The 2.6 A crystal structure of the lipoxygenase domain of human arachidonate 12-lipoxygenase, 12S-type
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-05-12
Authors: Tresaugues, L., Moche, M., Arrowsmith, C.H., Berglund, H., Busam, R.D., Collins, R., Dahlgren, L.G., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Herman, M.D., Johansson, A., Johansson, I., Kallas, A., Karlberg, T., Kotenyova, T., Lehtio, L., Nilsson, M.E., Nyman, T., Olesen, K., Persson, C., Sagemark, J., Schueler, H., Svensson, L., Thorsell, A.G., Van Den Berg, S., Welin, M., Weigelt, J., Wikstrom, M., Nordlund, P., Structural Genomics Consortium (SGC)
PDB entry 3d3m: The Crystal Structure of the C-terminal region of Death Associated Protein 5(DAP5)
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-12
Authors: Dym, O., Israel Structural Proteomics Center (ISPC)
PDB entry 3d3n: Crystal structure of lipase/esterase (lp_2923) from Lactobacillus plantarum. Northeast Structural Genomics Consortium target LpR108
Classification: HYDROLASE
Source organism: Lactobacillus plantarum WCFS1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-05-12
Authors: Forouhar, F., Su, M., Seetharaman, J., Mao, L., Janjua, H., Xiao, R., Ciccosanti, C., Maglaqui, M., Foote, E.L., Zhao, L., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3d3o: Crystal structure of the effector domain of the putative transcriptional regulator IclR from Acinetobacter sp. ADP1
Classification: TRANSCRIPTION REGULATOR
Source organism: Acinetobacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2008-05-12
Authors: Kim, Y., Shackelford, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3d3p: Crystal structure of PDE4B catalytic domain in complex with a pyrazolopyridine inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2008-05-12
Authors: Somers, D.O., Neu, M.
PDB entry 3d3q: Crystal structure of tRNA delta(2)-isopentenylpyrophosphate transferase (SE0981) from Staphylococcus epidermidis. Northeast Structural Genomics Consortium target SeR100
Classification: TRANSFERASE
Source organism: Staphylococcus epidermidis ATCC 12228
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-05-12
Authors: Forouhar, F., Abashidze, M., Seetharaman, J., Mao, L., Xiao, R., Maglaqui, M., Lee, D., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3d3r: Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1
Classification: CHAPERONE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2008-05-12
Authors: Kim, Y., Skarina, T., Onopriyenko, O., Edwards, A.M., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3d3s: Crystal structure of L-2,4-diaminobutyric acid acetyltransferase from Bordetella parapertussis
Classification: TRANSFERASE
Source organism: Bordetella parapertussis 12822
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2008-05-12
Authors: Kim, Y., Volkart, L., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3d3t: Crystal Structure of HIV-1 CRF01_AE in complex with the substrate p1-p6
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-12
Authors: Bandaranayake, R.M., Prabu-Jeyabalan, M., Kakizawa, J., Sugiura, W., Schiffer, C.A.
PDB entry 3d3u: Crystal structure of 4-hydroxybutyrate CoA-transferase (abfT-2) from Porphyromonas gingivalis. Northeast Structural Genomics Consortium target PgR26
Classification: TRANSFERASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-12
Authors: Forouhar, F., Neely, H., Zhang, X.-Z., Price II, W.N., Hussain, M., Seetharaman, J., Xiao, R., Conover, K., Cunningham, K., Ma, L.-C., Ho, C.K., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
PDB entry 3d3v: The complex between TCR A6 and human Class I MHC HLA-A2 with the modified HTLV-1 TAX (Y5(3,4-difluoroPhenylalanine)) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-12
Authors: Borbulevych, O.Y., Clemens, J.R., Baker, B.M.
PDB entry 3d3w: Structure of L-Xylulose Reductase with bound coenzyme, phosphate and hydroxide.
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2008-05-12
Authors: Zhao, H.-T., El-Kabbani, O.
PDB entry 3d3x: Crystal structure of botulinum neurotoxin serotype E catalytic domain in complex with SNAP-25 substrate peptide
Classification: HYDROLASE/HYDROLASE SUBSTRATE
Source organism: Clostridium butyricum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2008-05-13
Authors: Agarwal, R., Swaminathan, S.
PDB entry 3d3y: Crystal structure of a conserved protein from Enterococcus faecalis V583
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Enterococcus faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2008-05-13
Authors: Tan, K., Li, H., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3d3z: Crystal structure of Actibind a T2 RNase
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-05-13
Authors: Gonzalez, A., Almog, O.
PDB entry 3d40: Crystal structure of fosfomycin resistance kinase FomA from Streptomyces wedmorensis complexed with diphosphate
Classification: TRANSFERASE
Source organism: Streptomyces wedmorensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2008-05-13
Authors: Pakhomova, S., Bartlett, S.G., Augustus, A., Kuzuyama, T., Newcomer, M.E.
PDB entry 3d41: Crystal structure of fosfomycin resistance kinase FomA from Streptomyces wedmorensis complexed with MgAMPPNP and fosfomycin
Classification: TRANSFERASE
Source organism: Streptomyces wedmorensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-13
Authors: Pakhomova, S., Bartlett, S.G., Augustus, A., Kuzuyama, T., Newcomer, M.E.
PDB entry 3d42: Crystal structure of HePTP in complex with a monophosphorylated Erk2 peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2008-05-13
Authors: Critton, D.A., Tortajada, A., Page, R.
PDB entry 3d43: The crystal structure of Sph at 0.8A
Classification: HYDROLASE
Source organism: Bacillus sphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.8 Å
Deposited: 2008-05-13
Authors: Almog, O.
PDB entry 3d44: Crystal structure of HePTP in complex with a dually phosphorylated Erk2 peptide mimetic
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-13
Authors: Critton, D.A., Tortajada, A., Page, R.
PDB entry 3d45: Crystal structure of mouse PARN in complex with m7GpppG
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2008-05-13
Authors: Wu, M., Song, H.
PDB entry 3d46: Crystal structure of L-rhamnonate dehydratase from Salmonella typhimurium complexed with Mg and L-tartrate
Classification: LYASE
Source organism: Salmonella typhimurium LT2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-14
Authors: Fedorov, A.A., Fedorov, E.V., Sauder, J.M., Burley, S.K., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3d47: Crystal structure of L-rhamnonate dehydratase from Salmonella typhimurium complexed with Mg and D-malate
Classification: LYASE
Source organism: Salmonella typhimurium LT2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-05-14
Authors: Fedorov, A.A., Fedorov, E.V., Sauder, J.M., Burley, S.K., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3d48: Crystal structure of a prolactin receptor antagonist bound to the extracellular domain of the prolactin receptor
Classification: Hormone/Hormone Receptor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-05-14
Authors: Svensson, L.A., Breinholt, J.
PDB entry 3d49: Thrombin Inhibition
Classification: Blood Clotting/Hydrolase Inhibitor
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-05-14
Authors: Baum, B., Heine, A., Klebe, G.
PDB entry 3d4a: Crystal structure of ribonuclease Sa2 with 3'-GMP obtained by ligand diffusion
Classification: HYDROLASE
Source organism: Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-14
Authors: Bauerova-Hlinkova, V., Sevcik, J.
PDB entry 3d4b: Crystal structure of Sir2Tm in complex with Acetyl p53 peptide and DADMe-NAD+
Classification: HYDROLASE
Source organism: Thermotoga maritima; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-14
Authors: Hawse, W.F., Hoff, K.G., Fatkins, D., Daines, A., Zubkova, O.V., Schramm, V.L., Zheng, W., Wolberger, C.
PDB entry 3d4c: ZP-N domain of mammalian sperm receptor ZP3 (crystal form I)
Classification: CELL ADHESION
Source organism: Escherichia coli (strain K12); Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-05-14
Authors: Jovine, L., Monne, M.
PDB entry 3d4d: Crystal structure of Staphylococcal nuclease variant Delta+PHS Y91E at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-05-14
Authors: Khangulov, V.S., Schlessman, J.L., Garcia-Moreno, E.B.
PDB entry 3d4e: Crystal structure of putative beta-lactamase inhibitor protein (NP_721579.1) from STREPTOCOCCUS MUTANS at 1.40 A resolution
Classification: HYDROLASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2008-05-14
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3d4f: SHV-1 beta-lactamase complex with LN1-255
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2008-05-14
Authors: Pattanaik, P., Bethel, C.R., Hujer, A.M., Bonomo, R.A., Buynak, J.D., van den Akker, F.
PDB entry 3d4g: ZP-N domain of mammalian sperm receptor ZP3 (crystal form II)
Classification: CELL ADHESION
Source organism: Escherichia coli (strain K12); Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-05-14
Authors: Jovine, L., Monne, M.
PDB entry 3d4i: Crystal structure of the 2H-phosphatase domain of Sts-2
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2008-05-14
Authors: Chen, Y., Carpino, N., Nassar, N.
PDB entry 3d4j: Crystal structure of Human mevalonate diphosphate decarboxylase
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-05-14
Authors: Voynova, N.E., Fu, Z., Battaile, K., Herdendorf, T.J., Kim, J.-J.P., Miziorko, H.M.
PDB entry 3d4k: Concanavalin A Complexed to a Synthetic Analog of the Trimannoside
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-05-14
Authors: Kadirvelraj, R., Foley, B.L., Dyekjaer, J.D., Woods, R.J.
PDB entry 3d4l: Human dipeptidyl peptidase IV/CD26 in complex with a novel inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-05-14
Authors: Scapin, G.
PDB entry 3d4m: Glutaredoxin 2 oxidized structure
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2008-05-14
Authors: Discola, K.F., de Oliveira, M.A., Barcena, J.A., Porras, P., Guimaraes, B.G., Netto, L.E.S.
PDB entry 3d4n: Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) in Complex with Sulfonamide Inhibitor
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2008-05-14
Authors: Wang, Z., Liu, J., Sudom, A., Walker, N.P.
PDB entry 3d4o: Crystal structure of dipicolinate synthase subunit A (NP_243269.1) from BACILLUS HALODURANS at 2.10 A resolution
Classification: OXIDOREDUCTASE
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-05-14
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3d4p: Crystal structure of Lactate Dehydrogenase from Staphylococcus Aureus complexed with NAD and pyruvate
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus subsp. aureus COL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-05-14
Authors: Schramm, V.L., Almo, S.C., Gutierrez, J.A., Ho, M.
PDB entry 3d4q: Pyrazole-based inhibitors of B-Raf kinase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-14
Authors: Morales, T., Vigers, G.P.A., Brandhuber, B.J.
PDB entry 3d4r: CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION
Classification: UNKNOWN FUNCTION
Source organism: Methanococcus maripaludis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-14
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3d4s: Cholesterol bound form of human beta2 adrenergic receptor.
Classification: MEMBRANE PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-14
Authors: Hanson, M.A., Cherezov, V., Roth, C.B., Griffith, M.T., Jaakola, V.-P., Chien, E.Y.T., Velasquez, J., Kuhn, P., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)
PDB entry 3d4t: Crystal structure of the periplasmic thioredoxin SoxS from Paracoccus pantotrophus (oxidized form)
Classification: OXIDOREDUCTASE
Source organism: Paracoccus denitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2008-05-15
Authors: Carius, Y., Friedrich, C.G., Scheidig, A.J.
PDB entry 3d4u: Bovine thrombin-activatable fibrinolysis inhibitor (TAFIa) in complex with tick-derived carboxypeptidase inhibitor.
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bos taurus; Rhipicephalus bursa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2008-05-15
Authors: Sanglas, L., Valnickova, Z., Arolas, J.L., Pallares, I., Guevara, T., Sola, M., Kristensen, T., Enghild, J.J., Aviles, F.X., Gomis-Ruth, F.X.
PDB entry 3d4v: Crystal Structure of an AlkA Host/Guest Complex N7MethylGuanine:Cytosine Base Pair
Classification: HYDROLASE/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2008-05-15
Authors: Lee, S., Bowman, B.R., Wang, S., Verdine, G.L.
PDB entry 3d4w: Crystal structure of Staphylococcal nuclease variant Delta+PHS A109R at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-15
Authors: Harms, M.J., Schlessman, J.L., Garcia-Moreno, E.B.
PDB entry 3d4x: Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.2 angstrom resolution
Classification: Oxygen storage, Oxygen transport
Source organism: Felis silvestris catus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-15
Authors: Balasubramanian, M., Sathya Moorthy, P., Neelagandan, K., Ponnuswamy, M.N.
PDB entry 3d4y: GOLGI MANNOSIDASE II complex with mannoimidazole
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2008-05-15
Authors: Kuntz, D.A., Tarling, C.A., Withers, S.G., Rose, D.R.
PDB entry 3d4z: GOLGI MANNOSIDASE II complex with gluco-imidazole
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2008-05-15
Authors: Kuntz, D.A., Tarling, C.A., Withers, S.G., Rose, D.R.
PDB entry 3d50: GOLGI MANNOSIDASE II complex with N-octyl-6-epi-valienamine
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2008-05-15
Authors: Kuntz, D.A., Tarling, C.A., Withers, S.G., Rose, D.R.
PDB entry 3d51: GOLGI MANNOSIDASE II complex with gluco-hydroxyiminolactam
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2008-05-15
Authors: Kuntz, D.A., Tarling, C.A., Withers, S.G., Rose, D.R.
PDB entry 3d52: GOLGI MANNOSIDASE II complex with an N-aryl carbamate derivative of gluco-hydroxyiminolactam
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2008-05-15
Authors: Kuntz, D.A., Tarling, C.A., Withers, S.G., Rose, D.R.
PDB entry 3d53: 2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii
Classification: HYDROLASE
Source organism: Rickettsia prowazekii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-15
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3d54: Structure of PurLQS from Thermotoga maritima
Classification: LIGASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2008-05-15
Authors: Ealick, S.E., Morar, M.
PDB entry 3d55: Crystal structure of M. tuberculosis YefM antitoxin
Classification: TOXIN INHIBITOR
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2008-05-15
Authors: Kumar, P., Issac, B., Dodson, E.J., Turkenberg, J.P., Mande, S.C.
PDB entry 3d57: TR Variant D355R
Classification: HORMONE, TRANSCRIPTION RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-15
Authors: Jouravel, N.
PDB entry 3d59: Crystal structure of human plasma platelet activating factor acetylhydrolase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-05-16
Authors: Samanta, U., Bahnson, B.J.
PDB entry 3d5e: Crystal structure of human plasma platelet activating factor acetylhydrolase covalently inhibited by paraoxon
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-05-16
Authors: Samanta, U., Bahnson, B.J.
PDB entry 3d5f: Crystal Structure of PPAR-delta complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-16
Authors: Amano, Y.
PDB entry 3d5g: Structure of ribonuclease Sa2 complexes with mononucleotides: new aspects of catalytic reaction and substrate recognition
Classification: HYDROLASE
Source organism: Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2008-05-16
Authors: Bauerova-Hlinkova, V., Dvorsky, R., Povazanec, F., Sevcik, J.
PDB entry 3d5h: Crystal structure of haementhin from Haemanthus multiflorus at 2.0A resolution: Formation of a novel loop on a TIM barrel fold and its functional significance
Classification: PROTEIN BINDING
Source organism: Scadoxus multiflorus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-05-16
Authors: Kumar, S., Singh, N., Sinha, M., Singh, S.B., Bhushan, A., Kaur, P., Srinivasan, A., Sharma, S., Singh, T.P.
PDB entry 3d5i: Crystal structure of ribonuclease Sa2 with exo-2',3'-cyclophosphorotioate
Classification: HYDROLASE
Source organism: Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-16
Authors: Bauerova-Hlinkova, V., Sevcik, J.
PDB entry 3d5j: Structure of yeast Grx2-C30S mutant with glutathionyl mixed disulfide
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2008-05-16
Authors: Discola, K.F., de Oliveira, M.A., Barcena, J.A., Porras, P., Padilla, C.A., Guimaraes, B.G., Netto, L.E.S.
PDB entry 3d5k: Crystal structure of the OprM channel in a non-symmetrical space group
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-05-16
Authors: Phan, G., Broutin, I., Ducruix, A.
PDB entry 3d5l: Crystal structure of regulatory protein RecX
Classification: SIGNALING PROTEIN
Source organism: Lactobacillus reuteri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2008-05-16
Authors: Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
PDB entry 3d5m: Crystal structure of HCV NS5B polymerase with a novel pyridazinone inhibitor
Classification: TRANSFERASE
Source organism: Hepatitis C virus (isolate BK)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2008-05-16
Authors: Zhao, Q., Showalter, R.E., Han, Q., Kissinger, C.R.
PDB entry 3d5n: Crystal structure of the Q97W15_SULSO protein from Sulfolobus solfataricus. NESG target SsR125.
Classification: structural genomics, unknown function
Source organism: Sulfolobus solfataricus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-16
Authors: Vorobiev, S.M., Chen, Y., Seetharaman, J., Lee, D., Foote, R.E., Maglaqui, M., Janjua, H., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
PDB entry 3d5o: Structural recognition and functional activation of FcrR by innate pentraxins
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-16
Authors: Lu, J., Marnell, L.L., Marjon, K.D., Mold, C., Du Clos, T.W., Sun, P.D.
PDB entry 3d5p: CRYSTAL STRUCTURE OF A PUTATIVE GLUCAN SYNTHESIS REGULATOR OF SMI1/KNR4 FAMILY (BF1740) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.45 A RESOLUTION
Classification: GENE REGULATION
Source organism: Bacteroides fragilis NCTC 9343
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2008-05-16
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 3d5q: Crystal Structure of 11b-HSD1 in Complex with Triazole Inhibitor
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2008-05-16
Authors: Wang, Z., Liu, J., Sudom, A., Walker, N.P.C.
PDB entry 3d5r: Crystal Structure of Efb-C (N138A) / C3d Complex
Classification: CELL ADHESION/TOXIN
Source organism: Homo sapiens; Staphylococcus aureus subsp. aureus str. Newman
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2008-05-16
Authors: Geisbrecht, B.V.
PDB entry 3d5s: Crystal Structure of Efb-C (R131A) / C3d Complex
Classification: CELL ADHESION/TOXIN
Source organism: Homo sapiens; Staphylococcus aureus subsp. aureus str. Newman
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-05-16
Authors: Geisbrecht, B.V.
PDB entry 3d5t: Crystal structure of malate dehydrogenase from Burkholderia pseudomallei
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2008-05-16
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3d5u: Crystal structure of a wildtype Polo-like kinase 1 (Plk1) catalytic domain.
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-17
Authors: Elling, R.A., Fucini, R.V., Romanowski, M.J.
PDB entry 3d5v: Crystal structure of an activated (Thr->Asp) Polo-like kinase 1 (Plk1) catalytic domain.
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-05-17
Authors: Elling, R.A., Fucini, R.V., Romanowski, M.J.
PDB entry 3d5w: Crystal structure of a phosphorylated Polo-like kinase 1 (Plk1) catalytic domain in complex with ADP.
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2008-05-17
Authors: Elling, R.A., Fucini, R.V., Romanowski, M.J.
PDB entry 3d5x: Crystal structure of an activated (Thr->Asp) Polo-like kinase 1 (Plk1) catalytic domain in complex with wortmannin.
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-17
Authors: Elling, R.A., Fucini, R.V., Romanowski, M.J.
PDB entry 3d5y: High resolution crystal structure of 1,5-alpha-arabinanase catalytic mutant (AbnBE201A)
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2008-05-18
Authors: Alhassid, A., Ben David, A., Shoham, Y., Shoham, G.
PDB entry 3d5z: Crystal Structure Analysis of 1,5-alpha-arabinanase catalytic mutant (AbnBE201A) complexed to arabinotriose
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-18
Authors: Alhassid, A., Ben David, A., Shoham, Y., Shoham, G.
PDB entry 3d60: Crystal Structure Analysis of 1,5-alpha-arabinanase catalytic mutant (D27A)
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-18
Authors: Alhassid, A., Ben David, A., Shoham, Y., Shoham, G.
PDB entry 3d61: Crystal Structure Analysis of 1,5-alpha-arabinanase catalytic mutant (AbnBD147A) complexed to arabinobiose
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2008-05-18
Authors: Alhassid, A., Ben David, A., Shoham, Y., Shoham, G.
PDB entry 3d62: Development of Broad-Spectrum Halomethyl Ketone Inhibitors Against Coronavirus Main Protease 3CLpro
Classification: HYDROLASE
Source organism: SARS coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2008-05-18
Authors: Bacha, U., Barrila, J., Gabelli, S.B., Kiso, Y., Amzel, L.M., Freire, E.
PDB entry 3d63: Crystal structure of inorganic pyrophosphatase from Burkholderia pseudomallei
Classification: HYDROLASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-05-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3d64: Crystal structure of S-adenosyl-L-homocysteine hydrolase from Burkholderia pseudomallei
Classification: HYDROLASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-05-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3d65: Crystal structure of Textilinin-1, a Kunitz-type serine protease inhibitor from the Australian Common Brown snake venom, in complex with trypsin
Classification: HYDROLASE INHIBITOR/HYDROLASE
Source organism: Bos taurus; Pseudonaja textilis textilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2008-05-19
Authors: Millers, E.-K.I., Masci, P.P., Lavin, M.F., de Jersey, J., Guddat, L.W.
PDB entry 3d66: Crystal structure of Thrombin-Activatable Fibrinolysis Inhibitor (TAFI)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2008-05-19
Authors: Brondijk, T.H.C., Huizinga, E.G.
PDB entry 3d67: Crystal structure of Thrombin-Activatable Fibrinolysis Inhibitor (TAFI) in complex with 2-guanidino-ethyl-mercaptosuccinic acid (GEMSA)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2008-05-19
Authors: Brondijk, T.H.C., Huizinga, E.G.
PDB entry 3d68: Crystal structure of a T325I/T329I/H333Y/H335Q mutant of Thrombin-Activatable Fibrinolysis Inhibitor (TAFI-IIYQ)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2008-05-19
Authors: Brondijk, T.H.C., Huizinga, E.G.
PDB entry 3d69: Crystal Structure of the Fab Fragment of an Anti-Factor IX Antibody 10C12
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.77 Å
Deposited: 2008-05-19
Authors: Shi, X.L., Huang, M.D., Zeng, T.
PDB entry 3d6a: Crystal structure of the 2H-phosphatase domain of Sts-2 in complex with tungstate.
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2008-05-19
Authors: Chen, Y., Carpino, N., Nassar, N.
PDB entry 3d6b: 2.2 A crystal structure of glutaryl-CoA dehydrogenase from Burkholderia pseudomallei
Classification: OXIDOREDUCTASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2008-05-19
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 3d6c: Crystal structure of Staphylococcal nuclease variant PHS L38E at cryogenic temperature
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-05-19
Authors: Harms, M.J., Schlessman, J.L., Sue, G.R., Garcia-Moreno, E.B.
PDB entry 3d6d: Crystal Structure of the complex between PPARgamma LBD and the LT175(R-enantiomer)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-05-19
Authors: Pochetti, G., Montanari, R.
PDB entry 3d6e: Crystal structure of the engineered 1,3-1,4-beta-glucanase protein from Bacillus licheniformis
Classification: HYDROLASE
Source organism: Bacillus licheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2008-05-19
Authors: Fita, I., Planas, A., Calisto, B.M., Addington, T.
PDB entry 3d6f: Crystal structure of human caspase-1 with a naturally-occurring Arg240->Gln substitution in complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-propionylamino]-4-oxo-pentanoic acid (z-VAD-FMK)
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2008-05-19
Authors: Rosen-Wolff, A., Roesler, J., Romanowski, M.J.
PDB entry 3d6g: Fc fragment of IgG1 (Herceptin) with protein-A mimetic peptide dendrimer ligand.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2008-05-19
Authors: Bujacz, A.D., Redzynia, I., Bujacz, G.D., Dinon, F., Pengo, P., Fassina, G.
PDB entry 3d6h: Crystal structure of human caspase-1 with a naturally-occurring Asn263->Ser substitution in complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-propionylamino]-4-oxo-pentanoic acid (z-VAD-FMK)
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-05-19
Authors: Rosen-Wolff, A., Roesler, J., Romanowski, M.J.
PDB entry 3d6i: Structure of the Thioredoxin-like Domain of Yeast Glutaredoxin 3
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2008-05-19
Authors: Lebioda, L., Gibson, L.M., Dingra, N.N., Outten, C.E.
PDB entry 3d6j: Crystal structure of Putative haloacid dehalogenase-like hydrolase from Bacteroides fragilis
Classification: HYDROLASE
Source organism: Bacteroides fragilis NCTC 9343
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-05-19
Authors: Chang, C., Wu, R., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 3d6k: The crystal structure of a putative aminotransferase from Corynebacterium diphtheriae
Classification: TRANSFERASE
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2008-05-19
Authors: Tan, K., Zhang, R., Duggan, E., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)