LiteFold/PDB huggingface dataset:
PDB entry 9nnw: X-ray structure of SARS-CoV-2 main protease V186F covalently bound to inhibitor GRL-050-23 at 1.55 A
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-03-06
Authors: Beechboard, S.N., Ghosh, A.K., Mesecar, A.D., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9nnx: [7,8,4-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (7,8,4) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.43 Å
Deposited: 2025-03-06
Authors: Abi Rizk, J., Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nny: [4,7,8-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,7,8) base pairs and 2 nt sticky ends, with hexagonal symmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.44 Å
Deposited: 2025-03-06
Authors: Abi Rizk, J., Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nnz: Structure of rod opsin in complex with a megabody
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2025-03-06
Authors: Suder, D.S., Gonen, S.
PDB entry 9no0: hPNPase RNA loading state
Classification: TRANSFERASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2025-03-07
Authors: Unseld, O., Das, H., Hallberg, B.M.
PDB entry 9no1: Cryo-ET map of the VZV capsid vertex (5-fold axis).
Classification: VIRUS
Source organism: Human alphaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.3 Å
Deposited: 2025-03-07
Authors: Oliver, S.L., Chen, M.
PDB entry 9no2: CryoEM structure of RibD-enolase complex
Classification: STRUCTURAL PROTEIN
Source organism: Francisella tularensis subsp. novicida
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-03-07
Authors: Liu, X., Clemens, D., Lee, B., Aguirre, R., Horwitz, M., Zhou, Z.H.
PDB entry 9no3: The bifunctional arabinofuranosidase/xylosidase from metagenome of Pseudacanthotermes militaris.
Classification: HYDROLASE
Source organism: Pseudacanthotermes militaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-03-07
Authors: Gomes, B.M., De Oliveira, G.S., de Melo, V.S., Rossini, N.O., Dias, M.V.B., Chambergo, F.S.
PDB entry 9no4: Cryo-EM structure of Csm/AcrIIIA2/enolase 3:2 complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Streptococcus phage 2972; Streptococcus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-03-07
Authors: Goswami, H.N., Li, H.
PDB entry 9no5: Crystal structure of vWFA domain from LapA adhesin of Pseudomonas fluorescens
Classification: CELL ADHESION
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-03-07
Authors: Kinrade, B., Guo, S., Ye, Q., Davies, P.L.
PDB entry 9no6: Structure of csTOS the Terpinolene Synthase from Cannabis sativa
Classification: BIOSYNTHETIC PROTEIN
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-07
Authors: Wiles, D., Roest, J., Vivivan, J.P., Beddoe, T.
PDB entry 9no7: Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
Classification: RIBOSOME
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Deposited: 2025-03-08
Authors: Aleksandrova, E.V., Syroegin, E.A., Basu, R.S., Vassilevski, A.A., Gagnon, M.G., Polikanov, Y.S.
PDB entry 9no8: CryoEM structure of computationally designed bundlemer peptide nanotube (14 protofilament)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-03-08
Authors: Das, A., Conticello, V.P.
PDB entry 9no9: CryoEM structure of computationally designed bundlemer peptide nanotube (15 protofilament)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2025-03-08
Authors: Das, A., Conticello, V.P.
PDB entry 9noa: Crystal structure of unliganded Fab MS-1805
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-03-08
Authors: Jain, M., Wilson, I.A.
PDB entry 9nob: Crystal Structutre of unliganded Fab 224
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2025-03-08
Authors: Jain, M., Wilson, I.A.
PDB entry 9noc: CCT G beta 5 S123L complex state 3
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-03-09
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nod: [4,3,12-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,3,12) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.23 Å
Deposited: 2025-03-09
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9nof: [7,7,6-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (7,7,6) base pairs and 1 nt sticky ends, with hexagonal symmetry
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.08 Å
Deposited: 2025-03-10
Authors: Abi Rizk, J., Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nog: [0,6,13-2] Shifted DNA assembly with an aspect ratio of (0,6,13) base pairs and 2 nt sticky ends containing a semi-junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.89 Å
Deposited: 2025-03-10
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9noj: [2,6,11-2] Shifted DNA assembly with an aspect ratio of (2,6,11) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-03-10
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9nok: [0,6,13-2] Shifted DNA assembly with an aspect ratio of (0,6,13) base pairs and 2 nt sticky ends containing a semi-junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.89 Å
Deposited: 2025-03-10
Authors: Horvath, A., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9nom: Structure of the NIS synthetase NcdF from nocardichelin biosynthesis
Classification: LIGASE
Source organism: Nocardia carnea NBRC 14403
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2025-03-10
Authors: Fisk, M.B., Gulick, A.M.
PDB entry 9non: Cryo-EM structure of amyloid fibril isolated from the kidney of a variant Alect2-I40V amyloidosis patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-03-10
Authors: Nguyen, B., Saelices, L.
PDB entry 9noo: CCT G beta 5 S123L complex state 2
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-10
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nop: CCT G beta 5 S123L complex state 1
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-10
Authors: Mack, D.C., Shen, P.S.
PDB entry 9noq: CCT G beta 5 R269E complex state 5
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-10
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nor: Human sweet taste receptor composed of TAS1R2 and TAS1R3 GPCRs from the combined datasets
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-10
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9nos: Human sweet taste receptor (TAS1R2 + TAS1R3) from the PEG400 dataset
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-03-10
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9not: Human sweet taste receptor (TAS1R2 + TAS1R3) from the sucralose dataset
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-03-10
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9nou: Human sweet taste receptor (TAS1R2 + TAS1R3) VFT domains from the combined datasets
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-03-10
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9nov: Human sweet taste receptor (TAS1R2 + TAS1R3) VFT domains bound to sucralose
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-10
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9now: Human sweet taste receptor (TAS1R2 + TAS1R3) VFT domains bound to aspartame
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-10
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9nox: Transmembrane domains of the human TAS1R2 sweet receptor subunit in complex with miniGs/gust25
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-10
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9noy: Human TAS1R2 transmembrane domains from the TAS1R2-TM-G protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-03-10
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9noz: Structure of photoactivated rhodopsin in complex with a megabody
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2025-03-10
Authors: Suder, D.S., Gonen, S.
PDB entry 9np0: Structure of human annexin A1 in complex with 2C1 Fab
Classification: PROTEIN BINDING/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-03-10
Authors: Nadezhdin, K.D., Sobolevsky, A.I.
PDB entry 9np6: Cryo-EM structure of AdnA(D934A)-AdnB(D1014A) in complex with AMPPNP and blunt end DNA
Classification: ISOMERASE/DNA
Source organism: Mycolicibacterium smegmatis MC2 155; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-11
Authors: Warren, G.M., De la Cruz, M.J., Goldgur, Y., Shuman, S.
PDB entry 9np8: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family in the space group I213 at 2.05 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9np9: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b - E553Q Mutant) from the GH2 family in the space group I213 at 2.6 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npa: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family in the space group I213 at 2.75 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npb: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family in the space group R3 at 2.45 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npc: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family in the space group I212121 at 2.65 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npd: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b - E553Q Mutant) from the GH2 family in the space group P3121 at 3.05 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npe: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family in the space group P1 at 2.40 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npf: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family in the space group P1 at 2.15 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npg: X-ray crystal structure of recombinant Can f 1-C100S in complex with human IgE mAb 12F3 Fab
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Canis lupus familiaris; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2025-03-11
Authors: Khatri, K., Ball, A., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.
PDB entry 9nph: X-ray crystal structure of recombinant Can f 1 in complex with human IgE mAb 1J11 Fab
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Canis lupus familiaris; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.592 Å
Deposited: 2025-03-11
Authors: Khatri, K., Ball, A., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.
PDB entry 9npi: X-ray crystal structure of recombinant Can f 1 in complex with human IgE 12F3 Fab
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Canis lupus familiaris; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-03-11
Authors: Khatri, K., Ball, A., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.
PDB entry 9npj: Structural studies of reaction hijacking inhibition of a malaria parasite aspartyl-tRNA synthetase.
Classification: LIGASE
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2025-03-11
Authors: Khandokar, Y., Ketprasit, K., Tai, C.W., Xie, S., Tilley, L., Griffin, M.D.W., Panjikar, S.
PDB entry 9npl: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b - E553Q Mutant) from the GH2 family in the space group P1 at 2.25 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npn: Crystal structure of the inactive conformation of a glycoside hydrolase (CapGH2b - E465A Mutant) from the GH2 family in the space group P1 at 3.1 A
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-03-11
Authors: Martins, M.P., Spadeto, J.P.M., Miyamoto, R.Y., Morais, M.A.B., Murakami, M.T.
PDB entry 9npp: Crystal structure of a Fe superoxide dismutase from the Acenetobacter baumannii (AB) at 1.45 A
Classification: METAL BINDING PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-03-11
Authors: Pattanayek, R., Davis, J., Damo, S.M.
PDB entry 9npr: RAVV glycoprotein in complex with hNPC1-C
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Ravn virus - Ravn, Kenya, 1987
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2025-03-11
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 9nps: Ravn marburgvirus glycoprotein
Classification: VIRAL PROTEIN
Source organism: Ravn virus - Ravn, Kenya, 1987
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-03-11
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 9npt: RAVV GP in complex with Nanosota-MB1
Classification: VIRAL PROTEIN
Source organism: Ravn virus - Ravn, Kenya, 1987; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-03-11
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 9npu: Pre-catalytic ternary complex of DNA Polymerase Lambda with bound 1-nt gapped SSB substrate containing template ribonucleotide opposite primer terminus, and incoming dUMPNPP
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-03-11
Authors: Kaminski, A.M., Luthman, A.J., Pedersen, L.C., Ramsden, D.A., Kunkel, T.A.
PDB entry 9npv: [4,8,7-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,8,7) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-03-11
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9npw: CCT G beta 5 R269E complex state 2
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-11
Authors: Mack, D.C., Shen, P.S.
PDB entry 9npx: SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Classification: RIBOSOME
Source organism: Homo sapiens; Rhinolophus lepidus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-03-11
Authors: Gen, R., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9npy: SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Classification: RIBOSOME
Source organism: Rhinolophus lepidus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-03-11
Authors: Gen, R., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9nq1: CCT G beta 5 R269E complex state 1
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-11
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nq3: Crystal structure of SARS-CoV-2 S2 directed Fab 1871
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-11
Authors: Muthuraman, K., Ivanochko, D., Julien, J.P.
PDB entry 9nq5: D-Ornithine/D-lysine decarboxylase C387A complexed with HEPES, putrescine, and D-ornithine
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-03-11
Authors: Phillips, R.S., Blankenship, S.
PDB entry 9nq6: CCT G beta 5 G257E complex state 4
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-11
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nq7: Cryo-EM structure of Csm/AcrIIIA2/enolase 4:3 complex
Classification: RNA BINDING PROTEIN
Source organism: Streptococcus phage vB_SthS-VA214; Streptococcus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-03-11
Authors: Goswami, H.N., Li, H.
PDB entry 9nq9: Magnesium ions-bound closed-state cryo-EM structure of human TRPV6 in cNW11 nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-03-12
Authors: Neuberger, A., Sobolevsky, A.I.
PDB entry 9nqa: [0,9,10-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,9,10) base pairs and 2 nt sticky ends containing a semi-junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.47 Å
Deposited: 2025-03-12
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nqd: Structure of Pseudomonas FapC Biofilm-Forming Functional Amyloid
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas fluorescens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-12
Authors: Hansen, K.H., Golcuk, M., Byeon, C.B., Plechinger, E.B., Conway, J.F., Andreasen, M., Gur, M., Akbey, U.
PDB entry 9nqj: Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-03-12
Authors: Qian, R., Jing, W., Vinay, I., Shanwen, Z., Jeehae, S., William, G.L., Luis, M.R.H., Jong, H.S., Young, A.G., IIya, L., Kirill, M., Baron, C., Huan, B.
PDB entry 9nqo: Crystal structure of Galectin-3 in complex with FN3
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-03-12
Authors: Guo, Z., Alexandrov, K., Mutschler, R., Caputo, A., Cui, Z.
PDB entry 9nqp: Composite structure of HSV1 helicase-primase in complex with a forked DNA and pritelivir
Classification: VIRAL PROTEIN/DNA
Source organism: Human alphaherpesvirus 1 strain 17; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-12
Authors: He, Q., Baranovskiy, A.G., Morstadt, L.M., Babayeva, N.D., Lim, C., Tahirov, T.H.
PDB entry 9nqt: [3,5,11-2] Shifted DNA assembly with an aspect ratio of (3,5,11) base pairs and 2 nt sticky ends
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.09 Å
Deposited: 2025-03-13
Authors: Horvath, A., Vecchioni, S., Woloszyn, K., Ohayon, Y.P., Sha, R.
PDB entry 9nqu: KDM6B-nucleosome structure stabilized by H3K27C-UNC8015 covalent conjugate
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-03-13
Authors: Lin, C.-C., McGinty, R.K.
PDB entry 9nqz: cryo-EM structure of broad betacoronavirus binding antibody 1871 in complex with OC43 S2 subunit
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human coronavirus OC43
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-03-13
Authors: Muthuraman, K., Jackman, M.J., Julien, J.P.
PDB entry 9nr0: Finding the exit route of hydrogen peroxide from the manganese superoxide dismutase (MnSOD) active site
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-03-13
Authors: Dasgupta, M., Borgstahl, G.E.O.
PDB entry 9nr1: CCT G beta 5 G257E complex state 1
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-13
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nr2: Crystal structure of H5 hemagglutinin from the influenza virus A/black swan/Akita/1/2016 with LSTa
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2025-03-13
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 9nr3: CRBN-DDB1 in complex with GLUL-cN
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2025-03-13
Authors: Cao, S., Zheng, N.
PDB entry 9nr4: CCT G beta 5 G257E complex state 3
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-14
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nr5: Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/black swan/Akita/1/2016 with LSTc
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2025-03-14
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 9nr6: The structure of Noelin 1 with cerebellar GluA1/A4-ATD
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-03-14
Authors: Fang, C.L., Gouaux, E.
PDB entry 9nr7: The structure of GluA1/A4 LBD-TMD in Noelin-AMPAR complex
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2025-03-14
Authors: Fang, C.L., Gouaux, E.
PDB entry 9nr8: The structure of cerebellar GluA1/A4 ATD
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2025-03-14
Authors: Fang, C.L., Gouaux, E.
PDB entry 9nr9: The structure of GluA1/A4 LBD-TMD with 2 TARPs
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.22 Å
Deposited: 2025-03-14
Authors: Fang, C.L., Gouaux, E.
PDB entry 9nra: The structure of GluA1/A4 LBD-TMD with 4 auxiliary subunits
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2025-03-14
Authors: Fang, C.L., Gouaux, E.
PDB entry 9nrb: Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/duck/France/1611008h/16 with LSTc
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-03-14
Authors: Lin, T.H., Zhu, Y., Wilson, I.A.
PDB entry 9nrc: TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-03-14
Authors: Saotome, K., Franklin, M.C.
PDB entry 9nrd: CCT G beta 5 G257E complex state 2
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-14
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nre: CCT G beta 5 G257E complex state 5
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-14
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nrf: CCT G beta 5 G257E complex state 6
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-14
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nrg: CCT G beta 5 R269E complex state 3
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-14
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nrh: CCT G beta 5 R269E complex state 4
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-03-14
Authors: Mack, D.C., Shen, P.S.
PDB entry 9nri: Methanosarcina acetivorans 50S subunit obtained from acetate-grown cells
Classification: RIBOSOME
Source organism: Methanosarcina acetivorans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-03-14
Authors: Ghosh, A., Fordjour, G.N.R., Armache, J.-P., Ferry, J.G., Murakami, K.S., Bevilacqua, P.C.
PDB entry 9nrj: abTCR bound to SAR444200, a novel anti-GPC3 T-cell engager, for the treatment of GPC3+ solid tumors
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-14
Authors: Svidritskiy, E., Qiu, Y., Yanfeng, Z.
PDB entry 9nrn: Lipoprotein Lipase Helical Filament with 11 nm diameter
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-03-14
Authors: Gunn, K.H., Wheless, A., Neher, S.B.
PDB entry 9nrp: The AAVpo.6 capsid
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.77 Å
Deposited: 2025-03-14
Authors: Nelson, A., Mietzsch, M., McKenna, R.
PDB entry 9nrq: GloR with glyoxal modification
Classification: CYTOSOLIC PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2025-03-14
Authors: Cuthbert, B.J., de Miranda, R., Martinez, J., Goulding, C.W.
PDB entry 9nrr: Crystal structure of the H5 influenza virus hemagglutinin from A/duck/France/161108h/2016 (H5N8) clade 2.3.4.4b
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-03-14
Authors: Zhu, X., Wilson, I.A.
PDB entry 9nrs: Crystal structure of the H5 influenza virus hemagglutinin from A/duck/France/161108h/2016 (H5N8) clade 2.3.4.4b in complex with O-linked glycan 26
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-14
Authors: Zhu, X., Wilson, I.A.
PDB entry 9nrt: Crystal structure of the H5 influenza virus hemagglutinin from A/duck/France/161108h/2016 (H5N8) clade 2.3.4.4b in complex with O-linked glycan 25
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-03-14
Authors: Zhu, X., Wilson, I.A.
PDB entry 9nru: Crystal structure of the H5 influenza virus hemagglutinin from A/duck/France/161108h/2016 (H5N8) clade 2.3.4.4b in complex with O-linked glycan 7
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-03-14
Authors: Zhu, X., Wilson, I.A.
PDB entry 9nrv: Crystal structure of the H5 influenza virus hemagglutinin from A/duck/France/161108h/2016 (H5N8) clade 2.3.4.4b in complex with avian receptor analog LSTa
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2025-03-14
Authors: Zhu, X., Wilson, I.A.
PDB entry 9nrx: Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Classification: Viral protein/Immune System
Source organism: Lama glama; Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2025-03-14
Authors: Pletnev, S., Kwong, P.D., Zhou, T.
PDB entry 9nry: Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Classification: Viral protein/Immune System
Source organism: Lama glama; Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2025-03-14
Authors: Pletnev, S., Kwong, P.D., Zhou, T.
PDB entry 9nrz: Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Classification: Viral protein/Immune System
Source organism: Lama glama; Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-03-14
Authors: Pletnev, S., Kwong, P.D., Zhou, T.
PDB entry 9ns0: Ground state of Src kinase domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-03-14
Authors: Cui, Y., Ali, R., Clay, M., Rossi, P., Liu, A., Yang, D., Gough, N., Geiger, T., Kalodimos, C.
PDB entry 9ns1: Intermediate state of Src kinase domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-03-15
Authors: Cui, Y., Ali, R., Clay, M., Rossi, P., Liu, A., Yang, D., Gough, N., Geiger, T., Kalodimos, C.
PDB entry 9ns5: Get3(D57N)-Get4/5 Complex (ATP-bound)
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-03-15
Authors: Kim, K.H., Granados-Villanueva, D.
PDB entry 9ns6: KslB apoenzyme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Kitasatospora setae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2025-03-16
Authors: Kim, K., Kim, W.
PDB entry 9ns9: Cryo-EM structure of Gi-coupled FFA2 in complex with TUG-1375 and compound 187
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-16
Authors: Zhang, X., Tikhonova, I., Milligan, G., Zhang, C.
PDB entry 9nsb: Crystal structure of an MKP5 allosteric loop mutant, S446G, in complex with an allosteric inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-16
Authors: Manjula, R., Bennett, A.M., Lolis, E.
PDB entry 9nsc: Bacterial Pictet-Spenglerase KslB in complex with L-Trp
Classification: BIOSYNTHETIC PROTEIN
Source organism: Kitasatospora setae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-03-16
Authors: Kim, K., Kim, W.
PDB entry 9nsd: Crystal structure of PvCSS-PvPTRAMP in complex with nanobody D7
Classification: CELL INVASION
Source organism: Plasmodium vivax; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2025-03-16
Authors: Seager, B.A., Scally, S.W., Cowman, A.F.
PDB entry 9nse: BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE, ETHYL-ISOSELENOUREA COMPLEX
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 1999-01-13
Authors: Li, H., Raman, C.S., Martasek, P., Kral, V., Masters, B.S.S., Poulos, T.L.
PDB entry 9nsj: Finding the exit route of hydrogen peroxide from the manganese superoxide dismutase (MnSOD) active site
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2025-03-17
Authors: Dasgupta, M., Borgstahl, G.E.O.
PDB entry 9nsk: Room-temperature X-ray structure of SARS-CoV-2 main protease in complex with inhibitor BBH-3
Classification: VIRAL PROTEIN,HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-03-17
Authors: Bhandari, D., Coates, L., Kovalevsky, A.
PDB entry 9nsl: Room-temperature X-ray structure of SARS-CoV-2 main protease in complex with with inhibitor BBH-4
Classification: VIRAL PROTEIN,HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-17
Authors: Bhandari, D., Coates, L., Kovalevsky, A.
PDB entry 9nsm: Crystal structure of the bat rotavirus apo P[10] VP8* receptor binding domain at 1.85 angstrom resolution
Classification: VIRAL PROTEIN
Source organism: Rotavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-03-17
Authors: Kennedy, M.A., Ni, S., Li, F., Wang, D., Soni, S.
PDB entry 9nsn: Crystal structure of the ternary complex of DCAF1 and WDR5 with PROTAC, OICR-41059
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-03-17
Authors: Mabanglo, M.F., Wilson, B.J., Mamai, A., Hoffer, L., Al-awar, R., Vedadi, M.
PDB entry 9nso: Crystal structure of the ternary complex of DCAF1 and WDR5 with PROTAC, OICR-41060
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-03-17
Authors: Mabanglo, M.F., Wilson, B.J., Mamai, A., Hoffer, L., Al-awar, R., Vedadi, M.
PDB entry 9nsr: Crystal structure of bifunctional farnesyl/geranylgeranyl pyrophosphate synthase (FPPS/GGPPS) from Plasmodium falciparum in complex with MMV019313
Classification: TRANSFERASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2025-03-17
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9nss: Bacterial Pictet-Spenglerase KslB in complex with L-Trp alternative binding mode
Classification: BIOSYNTHETIC PROTEIN
Source organism: Kitasatospora setae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-03-17
Authors: Kim, K., Kim, W.
PDB entry 9nst: Bacterial Pictet-Spenglerase KslB in complex with product of L-Trp and a-ketoglutaric acid
Classification: BIOSYNTHETIC PROTEIN
Source organism: Kitasatospora setae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2025-03-17
Authors: Kim, K., Kim, W.
PDB entry 9nsu: Bacterial Pictet-Spenglerase KslB in complex with product of L-Trp and succinic semialdehyde
Classification: BIOSYNTHETIC PROTEIN
Source organism: Kitasatospora setae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2025-03-17
Authors: Kim, K., Kim, W.
PDB entry 9nsv: CryoEM structure of ancestral nitrogenase MoFe-protein
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2025-03-17
Authors: Shen, Y., Warmack, R.A.
PDB entry 9nsw: apo-OXA-23, pH 7.5
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-03-17
Authors: Smith, C.A., Toth, M., Stewart, N.K., Vakulenko, S.B.
PDB entry 9nsx: OXA-23-NA-1-157, 3 minute soak
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-03-17
Authors: Smith, C.A., Toth, M., Stewart, N.K., Vakulenko, S.B.
PDB entry 9nsy: OXA-23-NA-1-157, 4 minute soak
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-17
Authors: Smith, C.A., Toth, M., Stewart, N.K., Vakulenko, S.B.
PDB entry 9nsz: OXA-23-NA-1-157, 6 minute soak
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-17
Authors: Smith, C.A., Toth, M., Stewart, N.K., Vakulenko, S.B.
PDB entry 9nt0: OXA-23-meropenem, pH 7.5
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-17
Authors: Smith, C.A., Toth, M., Stewart, N.K., Vakulenko, S.B.
PDB entry 9nt1: Crystal structure of Lingulodinium polyedra MIF (lpMIF)
Classification: CYTOKINE
Source organism: Lingulodinium polyedra
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-03-17
Authors: Manjula, R., Basquin, J., Lolis, E.
PDB entry 9nt3: Crystal structure of apo ecLacI transcription factor ancestor 1
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-03-18
Authors: Georgelin, R.L., Frkic, R.L., Jackson, C.J.
PDB entry 9nt4: Crystal structure of ecLacI transcription factor ancestor 1 bound to d-fucose
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-03-18
Authors: Georgelin, R.L., Frkic, R.L., Jackson, C.J.
PDB entry 9nt5: Crystal structure of ecLacI transcription factor ancestor 1 bound to glycerol
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-03-18
Authors: Georgelin, R.L., Frkic, R.L., Tan, L., Kaczmarski, J., Jackson, C.J.
PDB entry 9nt6: Crystal structure of ecLacI transcription factor ancestor 4 bound to Beta-methyl-D-galactoside
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-03-18
Authors: Georgelin, R.L., Frkic, R.L., Tan, L., Kaczmarski, J., Jackson, C.J.
PDB entry 9nta: Methanosarcina acetivorans 50S subunit obtained from methanol-grown cells
Classification: RIBOSOME
Source organism: Methanosarcina acetivorans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2025-03-18
Authors: Ghosh, A., Fordjour, G.N.R., Armache, J.-P., Ferry, J.G., Murakami, K.S., Bevilacqua, P.C.
PDB entry 9ntb: Crystal structure of human HDAC2 in complex with TNG260
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-18
Authors: McMillan, B.J., Whittington, D.A.
PDB entry 9ntc: Structure of Synaptic Vesicle Protein 2A Bound to Brivaracetam and UCB1244283
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-03-18
Authors: Mittal, A., Martin, M.F., Ledecq, M., Horanyi, P.S., Coleman, J.A.
PDB entry 9nte: Helix pomatia AMP deaminase (HPAMPD) apoenzyme
Classification: HYDROLASE
Source organism: Helix pomatia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-18
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9ntf: Helix pomatia AMP deaminase (HPAMPD) with unknown density in the active site
Classification: HYDROLASE
Source organism: Helix pomatia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-03-18
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9ntg: Helix pomatia AMP deaminase (HPAMPD) in complex with Pentostatin
Classification: HYDROLASE
Source organism: Helix pomatia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2025-03-18
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9nth: Helix pomatia AMP deaminase (HPAMPD) in complex with Pentostatin monophosphate (PMP)
Classification: HYDROLASE
Source organism: Helix pomatia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-03-18
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9nti: Chimeric Adenosine deaminase growth factor (ADGF) apoenzyme
Classification: HYDROLASE
Source organism: Aplysia californica
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-03-18
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9ntj: Chimeric Adenosine deaminase growth factor (ADGF) in complex with pentostatin
Classification: HYDROLASE
Source organism: Aplysia californica; Helix pomatia
Experimental method: X-RAY DIFFRACTION
Resolution: 3.28 Å
Deposited: 2025-03-18
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9ntk: Chimeric Adenosine deaminase growth factor (ADGF) in complex with pentostatin monophosphate
Classification: HYDROLASE
Source organism: Aplysia californica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2025-03-18
Authors: Kaur, G., Horton, J.R., Cheng, X.
PDB entry 9ntm: SPEF1 bound to 14-pf microtubule
Classification: PROTEIN BINDING
Source organism: Bos taurus; Homo sapiens; Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2025-03-18
Authors: Legal, T., Bui, K.H.
PDB entry 9ntn: Structure of Cap10-CdnD complex containing NDG modification
Classification: ANTIVIRAL PROTEIN
Source organism: Hyphomicrobiales
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-03-18
Authors: Wassarman, D.R., Pfaff, P., Paulo, J.A., Gygi, S.P., Shokat, K.M., Kranzusch, P.J.
PDB entry 9nto: Structure of Cap9-CdnD complex containing NDG modification
Classification: ANTIVIRAL PROTEIN
Source organism: Hyphomicrobiales
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-03-18
Authors: Wassarman, D.R., Pfaff, P., Paulo, J.A., Gygi, S.P., Shokat, K.M., Kranzusch, P.J.
PDB entry 9ntq: Identification and non-clinical characterization of SAR444200, a novel anti-GPC3 T-cell engager, for the treatment of GPC3+ solid tumors
Classification: ONCOPROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.04 Å
Deposited: 2025-03-18
Authors: Batchelor, J.D., Svidritskiy, E.
PDB entry 9ntr: Crystal structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum in complex with inhibitor WIN-1-158.
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2025-03-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9nts: Crystal structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum in complex with inhibitor BKI-1862.
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2025-03-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ntt: Identification and non-clinical characterization of SAR444200, a novel anti-GPC3 T-cell engager for the treatment of GPC3+ solid tumors
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.45 Å
Deposited: 2025-03-18
Authors: Batchelor, J.D., Svidritskiy, E.
PDB entry 9ntx: Crystal structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum in complex with inhibitor WIN-1-159.
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-03-19
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9nty: Crystal structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum in complex with inhibitor BKI-1708.
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-03-19
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ntz: Crystal structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum in complex with inhibitor BKI-1932.
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-03-19
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9nu0: Crystal structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum in complex with inhibitor WIN-III-6.
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-03-19
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9nu1: Uromodulin filament lattice interface from human urine
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-19
Authors: Chang, A.N., Fitzpatrick, A.W.P.
PDB entry 9nu2: Uromodulin filament lattice in the straight arrangement from human urine
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2025-03-19
Authors: Chang, A.N., Fitzpatrick, A.W.P.