LiteFold/PDB huggingface dataset:
PDB entry 7ljz: X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 2
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2021-02-01
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7lk0: Ornithine Aminotransferase (OAT) cocrystallized with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2021-02-01
Authors: Butrin, A., Shen, S., Liu, D., Silverman, R.
PDB entry 7lk1: Ornithine Aminotransferase (OAT) with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148) - 1 Hour Soaking
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2021-02-01
Authors: Butrin, A., Shen, S., Liu, D., Silverman, R.
PDB entry 7lk3: Crystal structure of untwinned human GABARAPL2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-02-01
Authors: Scicluna, K., Dewson, G., Czabotar, P.E., Birkinshaw, R.W.
PDB entry 7lk4: Crystal structure of BAK L100A in complex with activating antibody fragments
Classification: APOPTOSIS
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-02-01
Authors: Robin, Y.A., Colman, P.M.
PDB entry 7lk5: X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 3
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2021-02-01
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7lk6: X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 4
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2021-02-01
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7lk7: Structure of the Exo-alpha-L-galactosidase BpGH29 from Bacteroides plebeius in complex with L-galactose
Classification: HYDROLASE
Source organism: Bacteroides plebeius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2021-02-01
Authors: Boraston, A.B., Robb, C.S.
PDB entry 7lk8: Crystal structure of KPC-2 T215P mutant
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2021-02-01
Authors: Furey, I., Palzkill, T., Sankaran, B., Hu, L., Prasad, B.V.V.
PDB entry 7lk9: Crystal structure of SARS-CoV-2 RBD-targeting antibody COV107-23 HC + COVD21-C8 LC
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2021-02-01
Authors: Yuan, M., Zhu, X., Wilson, I.A., Wu, N.C.
PDB entry 7lka: Crystal structure of SARS-CoV-2 RBD-targeting antibody COV107-23
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.981 Å
Deposited: 2021-02-02
Authors: Yuan, M., Zhu, X., Wilson, I.A., Wu, N.C.
PDB entry 7lkb: Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m42.127
Classification: IMMUNE SYSTEM/ANTIGEN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-02-02
Authors: Xu, K., Kwong, P.D.
PDB entry 7lkc: Crystal Structure of Keratinimicin A
Classification: ANTIBIOTIC
Source organism: Amycolatopsis keratiniphila
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2021-02-02
Authors: Davis, K.M., Jeffrey, P.D., Seyedsayamdost, M.R.
PDB entry 7lkd: X-ray crystal structure of the SARS-CoV-2 main protease in space group P21.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2021-02-02
Authors: Narwal, M., Murakami, K.S.
PDB entry 7lke: X-ray crystal structure of the SARS-CoV-2 main protease in space group C2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2021-02-02
Authors: Narwal, M., Murakami, K.S.
PDB entry 7lkf: WT Chicken Scap L1-L7 / Fab 4G10 complex focused refinement
Classification: LIPID BINDING PROTEIN
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-02-02
Authors: Kober, D.L., Radhakrishnan, A., Goldstein, J.L., Brown, M.S., Clark, L.D., Bai, X.-C., Rosenbaum, D.M.
PDB entry 7lkg: Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m43.151
Classification: IMMUNE SYSTEM/ANTIGEN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2021-02-02
Authors: Xu, K., Kwong, P.D.
PDB entry 7lkh: Chicken Scap D435V L1-L7 domain / Fab complex focused map
Classification: LIPID BINDING PROTEIN
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-02-02
Authors: Kober, D.L., Radhakrishnan, A., Goldstein, J.L., Brown, M.S., Clark, L.D., Bai, X.-C., Rosenbaum, D.M.
PDB entry 7lki: The crystal structure of Epitope III of HCV envelop protein E2 in complex with antibody 1H8
Classification: VIRUS
Source organism: Hepacivirus C; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-02-02
Authors: Deng, L., Zhang, P.
PDB entry 7lkj: Crystal structure of Helicobacter pylori aminofutalosine deaminase (AFLDA)
Classification: HYDROLASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2021-02-02
Authors: Harijan, R.K., Feng, M., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 7lkk: Crystal structure of Helicobacter pylori aminofutalosine deaminase (AFLDA) in complex with Methylthio-coformycin
Classification: HYDROLASE/INHIBITOR
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2021-02-02
Authors: Harijan, R.K., Feng, M., Bonanno, J.B., Almo, S.C., Schramm, V.L.
PDB entry 7lkl: The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, cesium ion at the metal coordination site and the product L-tryptophan at the enzyme beta-site at 1.05 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring
Classification: LYASE/LYASE INHIBITOR
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2021-02-02
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7lkm: The PilB(N-terminal_P70S mutant)-PilZ complex of the Type IV pilus from Xanthomonas citri
Classification: TRANSPORT PROTEIN
Source organism: Xanthomonas axonopodis pv. citri
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-02-02
Authors: Llontop, E.E., Guzzo, C.R., Farah, C.S.
PDB entry 7lkn: The PilB(N-terminal_P70S mutant)-PilZ complex (SeMet)
Classification: TRANSPORT PROTEIN
Source organism: Xanthomonas axonopodis pv. citri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2021-02-02
Authors: Llontop, E.E., Guzzo, C.R., Farah, C.S.
PDB entry 7lko: The PilB(N-terminal)-PilZ complex of the Type IV pilus from Xanthomonas citri (2.9 A)
Classification: TRANSPORT PROTEIN
Source organism: Xanthomonas axonopodis pv. citri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2021-02-02
Authors: Llontop, E.E., Guzzo, C.R., Farah, C.S.
PDB entry 7lkp: Structure of ATP-free human ABCA4
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2021-02-02
Authors: Liu, F., Lee, J., Chen, J.
PDB entry 7lkq: The PilZ(delta107-117)-FimX(GGDEF-EAL) complex from Xanthomonas citri
Classification: TRANSPORT PROTEIN
Source organism: Xanthomonas axonopodis pv. citri
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2021-02-02
Authors: Llontop, E.E., Guzzo, C.R., Farah, C.S.
PDB entry 7lkr: 1.65 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 2a
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-02-02
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Nguyen, H.N., Baird, M.A., Kim, Y., Shadipeni, N., Chang, K.O., Groutas, W.C.
PDB entry 7lks: 1.70 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 2f
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-02-02
Authors: Kashipathy, M.M., Lovell, S., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Nguyen, H.N., Baird, M.A., Kim, Y., Shadipeni, N., Chang, K.O., Groutas, W.C.
PDB entry 7lkt: 1.50 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 2k
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-02-02
Authors: Kashipathy, M.M., Lovell, S., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Nguyen, H.N., Baird, M.A., Kim, Y., Shadipeni, N., Chang, K.O., Groutas, W.C.
PDB entry 7lku: 1.65 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 3b (deuterated analog of inhibitor 2a)
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-02-02
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Nguyen, H.N., Baird, M.A., Kim, Y., Shadipeni, N., Chang, K.O., Groutas, W.C.
PDB entry 7lkv: 1.55 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 3c
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-02-02
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Nguyen, H.N., Baird, M.A., Kim, Y., Shadipeni, N., Chang, K.O., Groutas, W.C.
PDB entry 7lkw: 1.65 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 3d (deuterated analog of inhibitor 3c)
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-02-02
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Nguyen, H.N., Baird, M.A., Kim, Y., Shadipeni, N., Chang, K.O., Groutas, W.C.
PDB entry 7lkx: 1.60 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 3e
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-02-02
Authors: Lovell, S., Kashipathy, M.M., Battaile, K.P., Chamandi, S.D., Rathnayake, A.D., Nguyen, H.N., Baird, M.A., Kim, Y., Shadipeni, N., Chang, K.O., Groutas, W.C.
PDB entry 7lky: Crystal Structure of PHF1 Tudor domain in complex with a peptidomimetic ligand UNC6641
Classification: Transcription/Transcription Inhibitor
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-02-03
Authors: Liu, J., Kutateladze, T.G.
PDB entry 7lkz: Structure of ATP-bound human ABCA4
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2021-02-03
Authors: Liu, F., Lee, J., Chen, J.
PDB entry 7ll0: Crystal structure of a four-tetrad, parallel, and K+ stabilized Tetrahymena thermophila telomeric G-quadruplex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-02-03
Authors: Yatsunyk, L.A., Chen, E.V.
PDB entry 7ll1: Cryo-EM structure of BG505 DS-SOSIP in complex with glycan276-dependent broadly neutralizing antibody VRC40.01 Fab
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2021-02-03
Authors: Manne, K., Acharya, P.
PDB entry 7ll2: Cryo-EM structure of BG505 DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody VRC33.01 Fab
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2021-02-03
Authors: Manne, K., Acharya, P.
PDB entry 7ll3: S-adenosylmethionine synthetase co-crystallized with UppNHp
Classification: TRANSFERASE
Source organism: Escherichia coli 908573
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2021-02-03
Authors: Tan, L.L., Jackson, C.J.
PDB entry 7ll4: High-resolution crystal structure of human JAK2 kinase domain (JH1) bound to PN5-114.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2021-02-03
Authors: Karim, M.R., Schonbrunn, E.
PDB entry 7ll5: High-resolution crystal structure of human JAK2 kinase domain (JH1) bound to PN5-150.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-02-03
Authors: Karim, M.R., Schonbrunn, E.
PDB entry 7ll6: Crystal structure of fucose synthetase family protein from Brucella suis ATCC 23445
Classification: OXIDOREDUCTASE
Source organism: Brucella suis (strain ATCC 23445 / NCTC 10510)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-02-03
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ll7: [2]Catenane From MccJ25 Variant G12C G21C
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2021-02-03
Authors: Link, A.J., Schroeder, H.V.
PDB entry 7ll8: D-Protein RFX-V1 Bound to the VEGFR1 Domain 2 Site on VEGF-A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2021-02-03
Authors: Marinec, P.S., Landgraf, K.E., Uppalapati, M., Chen, G., Xie, D., Jiang, Q., Zhao, Y., Petriello, A., Deshayes, K., Kent, S.B.H., Ault-Riche, D., Sidhu, S.S.
PDB entry 7ll9: D-Protein RFX-V2 Bound to the VEGFR1 Domain 3 Site on VEGF-A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-02-03
Authors: Marinec, P.S., Landgraf, K.E., Uppalapati, M., Chen, G., Xie, D., Jiang, Q., Zhao, Y., Petriello, A., Deshayes, K., Kent, S.B.H., Ault-Riche, D., Sidhu, S.S.
PDB entry 7lla: Structure of human ATP citrate lyase in complex with acetyl-CoA and oxaloacetate (EM map was generated in Cryosparc with non-uniform refinement)
Classification: LYASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2021-02-03
Authors: Wei, X., Marmorstein, R.
PDB entry 7llb: Crystal structure of KPC-2 S70G/T215P mutant with hydrolyzed meropenem
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2021-02-03
Authors: Furey, I., Palzkill, T., Sankaran, B., Hu, L., Prasad, B.V.V.
PDB entry 7lld: Crystal structure of GenB4 in complex with external aldimine of PLP-sisomicin
Classification: BIOSYNTHETIC PROTEIN
Source organism: Micromonospora echinospora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-02-03
Authors: Bury, P.S., Huang, F., Leadlay, P.F., Dias, M.V.B.
PDB entry 7lle: Crystal structure of GenB4 in complex with PLP
Classification: TRANSFERASE
Source organism: Micromonospora echinospora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.704 Å
Deposited: 2021-02-03
Authors: Bury, P.S., Huang, F., Leadlay, P.F., Dias, M.V.B.
PDB entry 7llf: SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-83
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-02-03
Authors: Ratia, K.M., Xiong, R., Thatcher, G.R.
PDB entry 7llh: KPC-2 F72Y mutant with acylated imipenem
Classification: HYDROLASE/ANTIBIOTIC
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-02-03
Authors: Furey, I., Palzkill, T., Sankaran, B., Hu, L., Prasad, B.V.V.
PDB entry 7lli: Stimulatory immune receptor protein complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-02-04
Authors: Rice, M.T., Littler, D.R., Rossjohn, J., Gully, B.S.
PDB entry 7llj: Inhibitory immune receptor protein complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2021-02-04
Authors: Rice, M.T., Littler, D.R., Rossjohn, J., Gully, B.S.
PDB entry 7llk: Cryo-EM structure of Q23.17_DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody 179NC75 Fab
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2021-02-04
Authors: Manne, K., Acharya, P.
PDB entry 7lll: Exendin-4-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in complex with Gs protein
Classification: MEMBRANE PROTEIN
Source organism: Heloderma suspectum; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-02-04
Authors: Wootten, D., Sexton, P.M., Belousoff, M.J., Danev, R., Zhang, X., Khoshouei, M., Venugopal, H.
PDB entry 7llp: X-ray radiation damage series on Lysozyme at 277K, crystal structure, dataset 1
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2021-02-04
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7llq: Substrate-dependent divergence of leukotriene A4 hydrolase aminopeptidase activity
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-02-04
Authors: Lee, K.H., Lee, S.H., Shim, Y.M., Paige, M., Noble, S.M.
PDB entry 7lly: Oxyntomodulin-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in complex with Gs protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-02-04
Authors: Wootten, D., Sexton, P.M., Belousoff, M.J., Danev, R., Zhang, X., Khoshouei, M., Venugopal, H.
PDB entry 7llz: SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-69
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-02-04
Authors: Ratia, K.M., Xiong, R., Thatcher, G.R.
PDB entry 7lm0: Crystal structure of GenB3 in complex with PLP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Micromonospora echinospora
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-02-04
Authors: Bury, P.S., Huang, F., Leadlay, P.F., Dias, M.V.B.
PDB entry 7lm2: HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 3C
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2021-02-05
Authors: Lesburg, C.A., Augustin, M.
PDB entry 7lm3: Crystal Structure of Thr316Ala mutant of JAMM domain of S. pombe
Classification: METAL BINDING PROTEIN
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-02-05
Authors: Shrestha, R., Das, C.
PDB entry 7lm4: The crystal structure of the I38T mutant PA Endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ000988503
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (strain swl A/California/04/2009 H1N1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-02-05
Authors: Cuypers, M.G., Slavish, P.J., Jayaraman, S., Rankovic, Z., White, S.W.
PDB entry 7lm5: Crystal structure of the Zn(II)-bound AdcAII H65A mutant variant of Streptococcus pneumoniae
Classification: METAL BINDING PROTEIN
Source organism: Streptococcus pseudopneumoniae 5247
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-02-05
Authors: Luo, Z., Zupan, M., McDevitt, C.A., Kobe, B.
PDB entry 7lm6: Crystal structure of the Zn(II)-bound AdcAII H205L mutant variant of Streptococcus pneumoniae
Classification: METAL BINDING PROTEIN
Source organism: Streptococcus pseudopneumoniae 5247
Experimental method: X-RAY DIFFRACTION
Resolution: 3.367 Å
Deposited: 2021-02-05
Authors: Luo, Z., Zupan, M., McDevitt, C.A., Kobe, B.
PDB entry 7lm7: Crystal structure of the Zn(II)-bound AdcAII E280Q mutant variant of Streptococcus pneumoniae
Classification: METAL BINDING PROTEIN
Source organism: Streptococcus pseudopneumoniae 5247
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2021-02-05
Authors: Luo, Z., Zupan, M., McDevitt, C.A., Kobe, B.
PDB entry 7lm8: Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with two cross-neutralizing antibodies CV38-142 and COVA1-16 Fabs isolated from COVID-19 patients
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.936 Å
Deposited: 2021-02-05
Authors: Liu, H., Wilson, I.A.
PDB entry 7lm9: Crystal structure of SARS-CoV spike protein receptor-binding domain in complex with a cross-neutralizing antibody CV38-142 Fab isolated from COVID-19 patient
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; SARS coronavirus MA15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2021-02-05
Authors: Liu, H., Yuan, M., Zhu, X., Wilson, I.A.
PDB entry 7lma: Tetrahymena telomerase T3D2 structure at 3.3 Angstrom
Classification: REPLICATION/RNA/DNA
Source organism: Tetrahymena thermophila; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-02-05
Authors: He, Y., Wang, Y., Liu, B., Helmling, C., Susac, L., Cheng, R., Zhou, Z.H., Feigon, J.
PDB entry 7lmb: Tetrahymena telomerase T5D5 structure at 3.8 Angstrom
Classification: REPLICATION/RNA/DNA
Source organism: Tetrahymena thermophila; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-02-05
Authors: He, Y., Wang, Y., Liu, B., Helmling, C., Susac, L., Cheng, R., Zhou, Z.H., Feigon, J.
PDB entry 7lmc: Structure of SARS CoV-2 main protease shows simultaneous processing of its N- and C-terminii
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.977 Å
Deposited: 2021-02-05
Authors: Gajiwala, K.S., Ferre, R.A., Liu, W., Ryan, K.
PDB entry 7lmd: SARS-CoV-2 3CLPro in complex with 2-(benzotriazol-1-yl)-N-[4-(1H-pyrazol-4-yl)phenyl]-N-(3-thienylmethyl)acetamide
Classification: VIRAL PROTEIN, hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2021-02-05
Authors: Goins, C.M., Arya, T., Macdonald, J.D., Stauffer, S.R.
PDB entry 7lme: SARS-CoV-2 3CLPro in complex with N-[4-[[2-(benzotriazol-1-yl)acetyl]-(3-thienylmethyl)amino]phenyl]cyclopropanecarboxamide
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-02-05
Authors: Goins, C.M., Arya, T., Macdonald, J.D., Stauffer, S.R.
PDB entry 7lmf: SARS-CoV-2 3CLPro in complex with 2-(benzotriazol-1-yl)-N-[4-(1H-imidazol-4-yl)phenyl]-N-(3-thienylmethyl)acetamide
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-02-05
Authors: Goins, C.M., Arya, T., Macdonald, J.D., Stauffer, S.R.
PDB entry 7lmg: SARS-CoV-1 3CLPro in complex with N-(4-(1H-imidazol-4-yl)phenyl)-2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(thiophen-3-ylmethyl)acetamide
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-02-05
Authors: Arya, T., Goins, C.M., Macdonald, J.D., Stauffer, S.R.
PDB entry 7lmh: SARS-CoV-1 3CLPro in complex with 2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(4-(pyridin-3-yl)phenyl)-N-(thiophen-3-ylmethyl)acetamide
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-02-05
Authors: Arya, T., Goins, C.M., Macdonald, J.D., Stauffer, S.R.
PDB entry 7lmi: SARS-CoV-1 3CLPro in complex with N-(4-(1H-pyrazol-4-yl)phenyl)-2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(thiophen-3-ylmethyl)acetamide
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.707 Å
Deposited: 2021-02-05
Authors: Arya, T., Goins, C.M., Macdonald, J.D., Stauffer, S.R.
PDB entry 7lmj: SARS-CoV-1 3CLPro in complex with 2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(3-chlorobenzyl)-N-(4-(2-oxo-1,2-dihydropyridin-3-yl)phenyl)acetamide
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.686 Å
Deposited: 2021-02-05
Authors: Arya, T., Goins, C.M., Macdonald, J.D., Stauffer, S.R.
PDB entry 7lmk: Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me3
Classification: TRANSFERASE
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.647 Å
Deposited: 2021-02-05
Authors: Ren, W., Song, J.
PDB entry 7lml: Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-02-05
Authors: Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.
PDB entry 7lmm: Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me2
Classification: TRANSFERASE
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.798 Å
Deposited: 2021-02-05
Authors: Ren, W., Song, J.
PDB entry 7lmn: Structure of full-length human lambda-6A light chain JTO in complex with stabilizer 26 [2-(7-(diethylamino)-4-methyl-2-oxo-2H-chromen-3-yl)ethyl (3-(1H-imidazol-4-yl)benzyl)carbamate]
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2021-02-05
Authors: Yan, N.L., Wilson, I.A., Kelly, J.W.
PDB entry 7lmo: Structure of full-length human lambda-6A light chain JTO in complex with stabilizer 34 [3-(2-(7-(diethylamino)-4-methyl-2-oxo-2H-chromen-3-yl)ethyl)-7-(1H-imidazole-5-carbonyl)-1,3,7-triazaspiro[4.4]nonane-2,4-dione]
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2021-02-05
Authors: Yan, N.L., Wilson, I.A., Kelly, J.W.
PDB entry 7lmp: Structure of full-length human lambda-6A light chain JTO in complex with stabilizer 36 [3-(2-(7-(diethylamino)-4-methyl-2-oxo-2H-chromen-3-yl)ethyl)-8-(1H-imidazole-4-carbonyl)-1,3,8-triazaspiro[4.5]decane-2,4-dione]
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2021-02-05
Authors: Yan, N.L., Wilson, I.A., Kelly, J.W.
PDB entry 7lmq: Structure of full-length human lambda-6A light chain JTO in complex with stabilizer 62 [4-methyl-3-(morpholinomethyl)-7-(1-phenylethoxy)-2H-chromen-2-one]
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2021-02-05
Authors: Yan, N.L., Wilson, I.A., Kelly, J.W.
PDB entry 7lmr: Structure of full-length human lambda-6A light chain JTO in complex with stabilizer 63 [4-methyl-3-(morpholinomethyl)-7-(2-phenylpropoxy)-2H-chromen-2-one]
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-02-05
Authors: Yan, N.L., Wilson, I.A., Kelly, J.W.
PDB entry 7lms: Structure of human SetD3 methyl-transferase in complex with 2A protease from Coxsackievirus B3
Classification: VIRAL PROTEIN
Source organism: Coxsackievirus B3 (strain Nancy); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-02-05
Authors: Verba, K.A., Schulze-Gahmen, U.
PDB entry 7lmt: Histone-lysine N-methyltransferase NSD2-PWWP1 with compound MRT10241866a
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2021-02-05
Authors: Lei, M., Freitas, R.F., Dong, A., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
PDB entry 7lmv: SPECIFIC INHIBITOR OF INTEGRIN ALPHA-V BETA-6
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-02-05
Authors: Dong, X., Bera, A.K., Roy, A., Shi, L., Springer, T.A., Baker, D.
PDB entry 7lmw: Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-06
Authors: Salay, L.E., Kozlyuk, N., Gilston, B.A., Gogliotti, R.D., Christov, P.P., Kim, K., Ovee, M., Waterson, A.G., Chazin, W.J.
PDB entry 7lmx: A HIGHLY SPECIFIC INHIBITOR OF INTEGRIN ALPHA-V BETA-6 WITH A DISULFIDE
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-02-06
Authors: Dong, X., Bera, A.K., Roy, A., Shi, L., Springer, T.A., Baker, D.
PDB entry 7lmy: Cryo-EM structure of human p97 in complex with NMS-873 in the presence of ATP, Npl4/Ufd1, and Ub6
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7lmz: Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and Ub6 (Class 1)
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7ln0: Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and Ub6 (Class 2)
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7ln1: Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and Ub6 (Class 3)
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7ln2: Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and polyubiquitinated Ub-Eos (FOM, Class 1)
Classification: TRANSLOCASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7ln3: Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and polyubiquitinated Ub-Eos (FOM, Class 2)
Classification: TRANSLOCASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7ln4: Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and polyubiquitinated Ub-Eos (FOM, Class 3)
Classification: TRANSLOCASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7ln5: Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and polyubiquitinated Ub-Eos (CHAPSO, Class 1, Close State)
Classification: TRANSLOCASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7ln6: Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and polyubiquitinated Ub-Eos (CHAPSO, Class 2, Open State)
Classification: TRANSLOCASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2021-02-06
Authors: Pan, M., Yu, Y., Liu, L., Zhao, M.
PDB entry 7ln7: X-ray radiation damage series on Proteinase K at 277K, crystal structure, dataset 1
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2021-02-06
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7ln8: X-ray radiation damage series on Lysozyme at 277K, crystal structure, dataset 3
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2021-02-06
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7ln9: X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 1
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2021-02-06
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7lna: Infectious mammalian prion fibril (263K scrapie)
Classification: PROTEIN FIBRIL
Source organism: Mesocricetus auratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2021-02-06
Authors: Kraus, A., Hoyt, F., Schwartz, C.L., Hansen, B., Hughson, A.G., Artikis, E., Race, B., Caughey, B.
PDB entry 7lnb: X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 2 (merged)
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2021-02-06
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7lnc: X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 3 (merged)
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2021-02-06
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7lnd: X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 4 (merged)
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2021-02-06
Authors: Yabukarski, F., Doukov, T., Herschlag, D.
PDB entry 7lne: ANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2021-02-07
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7lnf: 3'-deoxy modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.652 Å
Deposited: 2021-02-07
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7lng: TNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-02-07
Authors: Fang, Z., Giurgiu, C., Szostak, J.W.
PDB entry 7lnh: S-adenosylmethionine synthetase co-crystallized with UppNHp
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-07
Authors: Tan, L.L., Jackson, C.J.
PDB entry 7lni: SeMet CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA
Classification: TRANSFERASE/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2021-02-07
Authors: Horton, J.R., Cheng, X., Zhou, J.
PDB entry 7lnj: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA
Classification: TRANSFERASE/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2021-02-07
Authors: Horton, J.R., Cheng, X., Zhou, J.
PDB entry 7lnk: Gorilla Bocavirus 1 Capsid
Classification: VIRUS
Source organism: Bocavirus gorilla/GBoV1/2009
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2021-02-07
Authors: Yu, J.C., Mietzsch, M., Agbandje-McKenna, M.
PDB entry 7lnl: Crystal structure of KPC-2 S70G/T215P mutant with hydrolyzed imipenem
Classification: HYDROLASE/ANTIBIOTIC
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2021-02-07
Authors: Furey, I., Palzkill, T., Sankaran, B., Hu, L., Prasad, B.V.V.
PDB entry 7lnm: Ornithine Aminotransferase (OAT) cocrystallized with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclopentene-1-carboxylic acid
Classification: TRANSFERASE/Inactivator
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-02-07
Authors: Butrin, A., Catlin, D., Zhu, W., Liu, D., Silverman, R.
PDB entry 7lnn: E. coli S-adenosyl methionine transferase co-crystallized with guanosine-5'-imidotriphosphate
Classification: TRANSFERASE
Source organism: Escherichia coli 908573
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-08
Authors: Tan, L.L., Jackson, C.J.
PDB entry 7lno: Structure of apo-CDD-1 beta-lactamase in imidazole and MPD
Classification: HYDROLASE
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2021-02-08
Authors: Smith, C.A., Vakulenko, S.B., Stewart, N.K.
PDB entry 7lnp: Structure of the exo-alpha-L-galactosidase BpGH29 (D264N mutant) from Bacteroides plebeius in complex with paranitrophenyl-alpha-L-galactopyranoside
Classification: HYDROLASE
Source organism: Bacteroides plebeius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-02-08
Authors: Boraston, A.B., Robb, C.S.
PDB entry 7lnq: Structure of the avibactam-CDD-1 3 minute complex in imidazole and MPD
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2021-02-08
Authors: Smith, C.A., Vakulenko, S.B., Stewart, N.K.
PDB entry 7lnr: Structure of the avibactam-CDD-1 120 minute complex in imidazole and MPD
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-02-08
Authors: Smith, C.A., Vakulenko, S.B., Stewart, N.K.
PDB entry 7lns: NMR solution structure of PsDef2 defensin from P. sylvestris
Classification: PLANT PROTEIN
Source organism: Pinus sylvestris
Experimental method: SOLUTION NMR
Deposited: 2021-02-08
Authors: Nesmelova, I.V., Kovaleva, V., Hrunyk, N.I., Yusypovych, Y.M., Shalovylo, Y.I.
PDB entry 7lnt: Ternary complex of the Isopentenyl Phosphate Kinase from Candidatus methanomethylophilus alvus bound to benzyl monophosphate and ATP
Classification: TRANSFERASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-02-08
Authors: Thomas, L.M., Singh, S., Scull, E.M., Bourne, C.R.
PDB entry 7lnu: Ternary complex of the Isopentenyl Phosphate Kinase from Candidatus methanomethylophilus alvus bound to isopentenyl monophosphate and ATP
Classification: TRANSFERASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-08
Authors: Thomas, L.M., Singh, S., Scull, E.M., Bourne, C.R.
PDB entry 7lnv: Apo Structure of Isopentenyl Phosphate Kinase from Candidatus methanomethylophilus alvus
Classification: TRANSFERASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-02-08
Authors: Thomas, L.M., Singh, S., Scull, E.M., Bourne, C.R.
PDB entry 7lnw: I146A mutant of the isopentenyl phosphate kinase from Candidatus methanomethylophilus alvus
Classification: TRANSFERASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2021-02-08
Authors: Thomas, L.M., Singh, S., Johnson, B.P.
PDB entry 7lnx: I146A mutant of the isopentenyl phosphate kinase from Candidatus methanomethylophilus alvus
Classification: TRANSFERASE
Source organism: Candidatus Methanomethylophilus alvus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-02-08
Authors: Thomas, L.M., Singh, S., Johnson, B.P.
PDB entry 7lny: Apo structure of the Histone chaperone ASF1A residues 1-155
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-02-08
Authors: Simon, B., Boggon, T.J., Calderwood, D., Turk, B.E.
PDB entry 7lo0: Structure of human ASF1a in complex with a TLK2 peptide
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2021-02-08
Authors: Simon, B., Calderwood, D., Turk, B.E., Boggon, T.J.
PDB entry 7lo1: FAD-dependent monooxygenase AfoD from A. nidulans
Classification: FLAVOPROTEIN
Source organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-02-08
Authors: Rodriguez Benitez, A., Smith, J.L., Narayan, A.R.H.
PDB entry 7lo2: S-adenosylmethionine synthetase cocrystallized with CTP
Classification: TRANSFERASE
Source organism: Escherichia coli 908573
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2021-02-09
Authors: Tan, L.L., Jackson, C.J.
PDB entry 7lo4: SARS-CoV-2 spike receptor-binding domain with a G485R mutation in complex with human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.465 Å
Deposited: 2021-02-09
Authors: Weekley, C.M., Parker, M.W.
PDB entry 7lo5: cryoEM structure DrdV-DNA complex
Classification: HYDROLASE/DNA
Source organism: Deinococcus wulumuqiensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2021-02-09
Authors: Shen, B.W., Stoddard, B.L.
PDB entry 7lo6: Structure of CD4 mimetic BNM-III-170 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-02-09
Authors: Jette, C.A., Bjorkman, P.J.
PDB entry 7lo7: NorA in complex with Fab25
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2021-02-09
Authors: Brawley, D.N., Sauer, D.B., Song, J.M., Koide, A., Koide, S., Traaseth, N.J., Wang, D.N.
PDB entry 7lo8: NorA in complex with Fab36
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2021-02-09
Authors: Brawley, D.N., Sauer, D.B., Song, J.M., Koide, A., Koide, S., Traaseth, N.J., Wang, D.N.
PDB entry 7lo9: RNA dodecamer containing a GNA A residue
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-02-09
Authors: Harp, J.M., Wawrzak, Z., Egli, M.
PDB entry 7loa: T4 lysozyme mutant L99A in complex with 3-fluoroiodobenzene
Classification: PROTEIN BINDING,HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.07 Å
Deposited: 2021-02-09
Authors: Kamenik, A.S., Singh, I., Lak, P., Balius, T.E., Liedl, K.R., Shoichet, B.K.
PDB entry 7lob: T4 lysozyme mutant L99A in complex with 1-fluoro-2-[(prop-2-en-1-yl)oxy]benzene
Classification: PROTEIN BINDING,HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2021-02-09
Authors: Kamenik, A.S., Singh, I., Lak, P., Balius, T.E., Liedl, K.R., Shoichet, B.K.
PDB entry 7loc: T4 lysozyme mutant L99A in complex with 1-bromanyl-4-fluoranyl-benzene
Classification: PROTEIN BINDING,HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2021-02-09
Authors: Kamenik, A.S., Singh, I., Lak, P., Balius, T.E., Liedl, K.R., Shoichet, B.K.
PDB entry 7lod: T4 lysozyme mutant L99A in complex with 1-fluoranyl-4-iodanyl-benzene
Classification: PROTEIN BINDING,HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2021-02-10
Authors: Kamenik, A.S., Singh, I., Lak, P., Balius, T.E., Liedl, K.R., Shoichet, B.K.
PDB entry 7loe: T4 lysozyme mutant L99A in complex with 1-fluoranylnaphthalene
Classification: PROTEIN BINDING,HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2021-02-10
Authors: Kamenik, A.S., Singh, I., Lak, P., Balius, T.E., Liedl, K.R., Shoichet, B.K.
PDB entry 7lof: T4 lysozyme mutant L99A in complex with 2-butylthiophene
Classification: PROTEIN BINDING,HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2021-02-10
Authors: Kamenik, A.S., Singh, I., Lak, P., Balius, T.E., Liedl, K.R., Shoichet, B.K.
PDB entry 7log: T4 lysozyme mutant L99A in complex with 3-butylpyridine
Classification: PROTEIN BINDING,HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2021-02-10
Authors: Kamenik, A.S., Singh, I., Lak, P., Balius, T.E., Liedl, K.R., Shoichet, B.K.
PDB entry 7loh: Structure of the HIV-1 gp41 transmembrane domain and cytoplasmic tail
Classification: MEMBRANE PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: SOLUTION NMR
Deposited: 2021-02-10
Authors: Piai, A., Fu, Q., Sharp, A.K., Bighi, B., Brown, A.M., Chou, J.J.
PDB entry 7loi: Model of the HIV-1 gp41 membrane-proximal external region, transmembrane domain and cytoplasmic tail
Classification: MEMBRANE PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: SOLUTION NMR
Deposited: 2021-02-10
Authors: Piai, A., Fu, Q., Sharp, A.K., Bighi, B., Brown, A.M., Chou, J.J.
PDB entry 7loj: T4 lysozyme mutant L99A in complex with 4-(3-phenylpropyl)aniline
Classification: PROTEIN BINDING,HYDROLASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-02-10
Authors: Kamenik, A.S., Singh, I., Lak, P., Balius, T.E., Liedl, K.R., Shoichet, B.K.
PDB entry 7lok: Structure of CD4 mimetic M48U1 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-02-10
Authors: Jette, C.A., Bjorkman, P.J.