LiteFold/PDB huggingface dataset:
PDB entry 8r02: Crystal structure of the retromer complex VPS29/VPS35 with the ligand bis-1,3-phenyl guanylhydrazone, 2a
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-10-30
Authors: Milani, M., Fagnani, E.
PDB entry 8r03: Staphylococcus aureus ClpP in complex with the natural product beta-lactone inhibitor Cystargolide A at 2.0 A resolution
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-30
Authors: Illigmann, A., Vielberg, M.-T., Lakemeyer, M., Wolf, F., Staudt, N., Dema, T., Stange, P., Liebhart, E., Kuttenlochner, W., Kulik, A., Malik, I., Grond, S., Sieber, S.A., Groll, M., Kaysser, L., Broetz-Oesterhelt, H.
PDB entry 8r04: Structure of Staphylococcus aureus ClpP Bound to the Covalent Active Site Inhibitor Cystargolide A
Classification: HYDROLASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-10-30
Authors: Illigmann, A., Vielberg, M.-T., Lakemeyer, M., Wolf, F., Staudt, N., Dema, T., Stange, P., Liebhart, E., Kuttenlochner, W., Kulik, A., Malik, I., Grond, S., Sieber, S.A., Groll, M., Kaysser, L., Broetz-Oesterhelt, H.
PDB entry 8r05: Photorhabdus lamondii ClpP in complex with the natural product beta-lactone inhibitor Cystargolide A at 2.5 A resolution
Classification: HYDROLASE
Source organism: Photorhabdus laumondii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-10-30
Authors: Illigmann, A., Vielberg, M.-T., Lakemeyer, M., Wolf, F., Staudt, N., Dema, T., Stange, P., Liebhart, E., Kuttenlochner, W., Kulik, A., Malik, I., Grond, S., Sieber, S.A., Groll, M., Kaysser, L., Broetz-Oesterhelt, H.
PDB entry 8r06: CRYSTAL STRUCTURE OF THERMOANAEROBACTERIUM XYLANOLYTICUM GH116 BETA-GLUCOSIDASE WITH A COVALENTLY BOUND CYCLOPHELLITOL AZIRIDINE
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-30
Authors: Offen, W.A., Davies, G.J., Breen, I.Z.
PDB entry 8r07: C-terminal Rel-homology Domain of NFAT1
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-10-30
Authors: Zak, K.M., Boettcher, J.
PDB entry 8r08: Cryo-EM structure of the cross-exon pre-B+AMPPNP complex
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2023-10-31
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8r09: Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-10-31
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8r0a: Cryo-EM structure of the cross-exon pre-B+5'ss complex
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2023-10-31
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8r0b: Cryo-EM structure of the cross-exon pre-B+ATP complex
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-10-31
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8r0c: Crystal structure of Borneoldehydrogenase ancestor N32
Classification: OXIDOREDUCTASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-10-31
Authors: Helmer, C.P.O., Dimos, N., Loll, B.
PDB entry 8r0d: Crystal structure of Borneoldehydrogenase ancestor N39
Classification: OXIDOREDUCTASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-10-31
Authors: Helmer, C.P.O., Dimos, N., Loll, B.
PDB entry 8r0e: p97 (VCP) mutant - F266A
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-31
Authors: Arie, M., Matzov, D., Karmona, R., Szenkier, N., Stanhill, A., Navon, A.
PDB entry 8r0f: Capsid structure of Giardiavirus (GLV) HP strain
Classification: VIRUS
Source organism: Giardia lamblia virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2023-10-31
Authors: Wang, H., Gianluca, M., Munke, A., Hassan, M.M., Lalle, M., Okamoto, K.
PDB entry 8r0g: Capsid structure of Giardiavirus (GLV) CAT strain
Classification: VIRUS
Source organism: Giardia lamblia virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-10-31
Authors: Wang, H., Gianluca, M., Munke, A., Hassan, M.M., Lalle, M., Okamoto, K.
PDB entry 8r0h: Pim1 in complex with (E)-3-(2-(thiophen-2-yl)vinyl)-3,4-dihydroquinoxalin-2(1H)-one and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-10-31
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r0i: Pseudomonas aeruginosa FabF C164A in complex with 3-amino-N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)benzamide
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-10-31
Authors: Yadrykhinsky, V., Brenk, R.
PDB entry 8r0j: Crystal structure of the retromer complex VPS29/VPS35 with the ligand bis-1,3-phenyl guanylhydrazone, 2a
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-10-31
Authors: Milani, M., Fagnani, E.
PDB entry 8r0k: Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 4.3 in detergent
Classification: MEMBRANE PROTEIN
Source organism: Cryobacterium levicorallinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-10-31
Authors: Kovalev, K., Marin, E., Stetsenko, A., Guskov, A., Lamm, G.H.U.
PDB entry 8r0l: Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 8.0 in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Cryobacterium levicorallinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2023-10-31
Authors: Kovalev, K., Marin, E., Stetsenko, A., Guskov, A., Lamm, G.H.U.
PDB entry 8r0m: Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 8.0 in detergent
Classification: MEMBRANE PROTEIN
Source organism: Cryobacterium levicorallinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-10-31
Authors: Kovalev, K., Marin, E., Stetsenko, A., Guskov, A., Lamm, G.H.U.
PDB entry 8r0n: Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 10.5 in detergent in the ground state
Classification: MEMBRANE PROTEIN
Source organism: Cryobacterium levicorallinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-31
Authors: Kovalev, K., Marin, E., Stetsenko, A., Guskov, A., Lamm, G.H.U.
PDB entry 8r0o: Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 10.5 in detergent in the M state
Classification: MEMBRANE PROTEIN
Source organism: Cryobacterium levicorallinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-10-31
Authors: Kovalev, K., Marin, E., Stetsenko, A., Guskov, A., Lamm, G.H.U.
PDB entry 8r0p: Cryo-EM structure of the microbial rhodopsin CryoR2 at pH 8.0 in detergent
Classification: MEMBRANE PROTEIN
Source organism: Subtercola endophyticus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2023-10-31
Authors: Kovalev, K., Marin, E., Stetsenko, A., Guskov, A., Lamm, G.H.U.
PDB entry 8r0q: Pim1 in complex with 6-bromo-1H-benzo[d]imidazol-2-amine and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-10-31
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r0s: Structure of reverse transcriptase from Cauliflower Mosaic Virus in complex with RNA/DNA hybrid
Classification: VIRAL PROTEIN
Source organism: Cauliflower mosaic virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-10-31
Authors: Prabaharan, C., Figiel, M., Chamera, S., Szczepanowski, R., Nowak, E., Nowotny, M.
PDB entry 8r0t: STRUCTURE OF THE MOUSE FCGBP DIMER PROTEIN IN ITS SEMIEXTENDED CONFORMATION
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-10-31
Authors: Gallego, P., Hansson, G.C., Johansson, M.E.V.
PDB entry 8r0v: SARS-CoV-2 Mpro (Omicron, P132H) in complex with alpha-ketoamide 13b-K at pH 6.5
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-11-01
Authors: Ibrahim, M., Sun, X., Hilgenfeld, R.
PDB entry 8r0w: Pim1 in complex with 5-bromobenzo[d]oxazol-2-amine and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-01
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r0y: Pim1 in complex with 3-((3-hydroxyphenyl)amino)quinoxaline-2-carboxylic acid and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-11-01
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r0z: 14-3-3 sigma in complex with TAZ peptide and stabilizing fragment TCF199
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-11-01
Authors: Centorrino, F., Andlovic, B., Ottmann, C.
PDB entry 8r10: Pim1 in complex with 4-(4-hydroxystyryl)benzoic acid and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-01
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r11: Structure of compound 7 bound to SARS-CoV-2 main protease
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-11-01
Authors: Mac Sweeney, A., Hazemann, J.
PDB entry 8r12: Structure of compound 8 bound to SARS-CoV-2 main protease
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.587 Å
Deposited: 2023-11-01
Authors: Mac Sweeney, A., Hazemann, J.
PDB entry 8r13: Alpha-1-antitrypsin (Met374Phe) in the native conformation
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-01
Authors: Aldobiyan, I., Lomas, D.A., Irving, J.A.
PDB entry 8r14: Structure of compound 11 bound to SARS-CoV-2 main protease
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.336 Å
Deposited: 2023-11-01
Authors: Mac Sweeney, A., Hazemann, J.
PDB entry 8r15: Crystal structure of Fusarium oxysporum NADase I
Classification: HYDROLASE
Source organism: Fusarium oxysporum f. sp. cubense race 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-11-01
Authors: Kallio, J.P., Ferrario, E., Stromland, O., Ziegler, M.
PDB entry 8r16: Structure of compound 12 bound to SARS-CoV-2 main protease
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-11-01
Authors: Mac Sweeney, A., Hazemann, J.
PDB entry 8r17: Crystal structure of Neurospora crassa NADase with modified C-terminus
Classification: HYDROLASE
Source organism: Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293; Neurospora crassa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-11-01
Authors: Kallio, J.P., Ferrario, E., Ziegler, M.
PDB entry 8r18: Pim1 in complex with (E)-4-(4-hydroxystyryl)benzoic acid and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-11-01
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r19: SARS-CoV-2 Mpro (Omicron, P132H) free enzyme
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-11-01
Authors: Ibrahim, M., Sun, X., Hilgenfeld, R.
PDB entry 8r1a: Model of the membrane-bound GBP1 oligomer
Classification: ANTIMICROBIAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 26.8 Å
Deposited: 2023-11-01
Authors: Weismehl, M., Chu, X., Kutsch, M., Lauterjung, P., Herrmann, C., Kudryashev, M., Daumke, O.
PDB entry 8r1b: Crystal structure of recombinant LasB from Pseudomonas aeruginosa PAO1 in complex with 6466
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-11-01
Authors: Kolling, D., Koehnke, J.
PDB entry 8r1c: SD1-2 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-11-01
Authors: Duyvesteyn, H.M.E., Ren, J., Stuart, D.I.
PDB entry 8r1d: SD1-3 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2023-11-01
Authors: Duyvesteyn, H.M.E., Ren, J., Stuart, D.I.
PDB entry 8r1e: crystal structure of acyl-CoA dehydrogenase FadE2 mutant (PA0508 M130G E296A Q303A) from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-11-01
Authors: Wang, M., Brear, P., Welch, M.
PDB entry 8r1f: Monomeric E6AP-E6-p53 ternary complex
Classification: LIGASE
Source organism: Homo sapiens; Human papillomavirus type 16; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-11-01
Authors: Sandate, C.R., Chakraborty, D., Kater, L., Kempf, G., Thoma, N.H.
PDB entry 8r1g: Dimeric ternary structure of E6AP-E6-p53
Classification: LIGASE
Source organism: Homo sapiens; Human papillomavirus type 16; Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2023-11-01
Authors: Sandate, C.R., Chakrabory, D., Kater, L., Kempf, G., Thoma, N.H.
PDB entry 8r1i: Human Carbonic Anhydrase II (hCAII) in complex with (R)-N-(3-Indol-1-yl-2-methyl-propyl)-4-sulfamoyl-benzamide
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-11-02
Authors: Kotschy, J., Gasper, R., Linser, R.
PDB entry 8r1j: Structure of avian H5N1 influenza A polymerase dimer in complex with human ANP32B.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-02
Authors: Carrique, L., Staller, E., Keown, J.R., Fan, H., Fodor, E., Grimes, J.M.
PDB entry 8r1k: Pim1 in complex with 6-bromobenzo[d]oxazol-2-amine and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-02
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r1l: Structure of avian H5N1 influenza A polymerase in complex with human ANP32B.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-02
Authors: Carrique, L., Staller, E., Keown, J.R., Fan, H., Fodor, E., Grimes, J.M.
PDB entry 8r1m: Structure of TxGH116 with covalently bound N-azido-octyl aziridine
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-11-02
Authors: Offen, W.A., Davies, G.J.
PDB entry 8r1n: Pim1 in complex with 4-(4-hydroxyphenethyl)benzoic acid and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-11-02
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r1o: Structure of C. thermophilum RNA exosome core
Classification: RNA BINDING PROTEIN
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-11-02
Authors: Lazzaretti, D., Liebau, J., Pilsl, M., Sprangers, R.
PDB entry 8r1p: Pim1 in complex with 6-bromobenzo[d]oxazol-2-amine and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-11-02
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r1q: SARS-CoV-2 Mpro (Omicron, P132H+T169S) in complex with alpha-ketoamide 13b-K
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-11-02
Authors: Sun, X., Ibrahim, M., Hilgenfeld, R.
PDB entry 8r1r: Structure of the Diels Alderase TedJ, in complex with cofactor FAD
Classification: OXIDOREDUCTASE
Source organism: Streptomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-11-02
Authors: Back, C.R., Race, P.R.
PDB entry 8r1s: Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant A25P, polymorph 2
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.11 Å
Deposited: 2023-11-02
Authors: Ooi, S.A., Valli, D., Maj, M.
PDB entry 8r1t: Pim1 in complex with 4-(4-aminophenethyl)benzoic acid and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-02
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r1u: MUC5AC D3 assembly. SNP rs878913005: Arg1201Trp.
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-11-02
Authors: Trillo-Muyo, S., Hansson, G.C.
PDB entry 8r1v: Pseudomonas aeruginosa FabF C164A in complex with N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)-2-(4-methoxyphenoxy)acetamide
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.087 Å
Deposited: 2023-11-02
Authors: Yadrykhinsky, V., Brenk, R.
PDB entry 8r1w: Pim1 in complex with 4-(5-(4-aminophenyl)-2H-1,2,3-triazol-4-yl)benzoic acid and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-11-02
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r1x: Solution structure and chemical shift assignments for HMG-D Y12F mutant complexed to a 14:12 dA2 bulge DNA
Classification: DNA BINDING PROTEIN
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2023-11-02
Authors: Yang, J.C., Hill, G.R., Neuhaus, D.
PDB entry 8r1z: MUC5AC D3 assembly. SNPs rs36189285, rs878913005: Arg996Gln, Arg1201Trp.
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-02
Authors: Trillo-Muyo, S., Hansson, G.C.
PDB entry 8r20: X-ray crystallographic structure of KstA15, polyketide biosynthesis enzyme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Micromonospora
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-02
Authors: Schnell, R., Schneider, G.
PDB entry 8r21: Alpha-1-antitrypsin (Ile340Trp) in the native conformation
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2023-11-02
Authors: Aldobiyan, I., Lee, H.J., Lomas, D.A., Irving, J.A.
PDB entry 8r22: INTS9-INTS11-BRAT1-WDR73 complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-11-02
Authors: Sabath, K., Qiu, C., Jonas, S.
PDB entry 8r23: INTS9-INTS11-BRAT1 complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-11-02
Authors: Sabath, K., Qiu, C., Jonas, S.
PDB entry 8r24: SARS-CoV-2 Mpro (Omicron, P132H+T169S) free enzyme
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-02
Authors: Sun, X., Ibrahim, M., El Kilani, H., Hilgenfeld, R.
PDB entry 8r25: Pim1 in complex with 4-(5-(4-aminophenyl)-1H-pyrazol-1-yl)benzoic acid and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-03
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r26: SARS-CoV-2 Mpro (Omicron,P132H) in complex with alpha-ketoamide 13b-K at pH 8.5
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-11-03
Authors: Ibrahim, M., Sun, X., Hilgenfeld, R.
PDB entry 8r27: Pim1 in complex with (Z)-4-(1-cyano-2-(4-hydroxyphenyl)vinyl)benzoic acid and Pimtide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-03
Authors: Hochban, P.M.M., Heine, A., Diederich, W.E.
PDB entry 8r28: Crystal structure of Amacstatin-1, a cystatin from the hard tick Amblyomma maculatum
Classification: PROTEIN BINDING
Source organism: Amblyomma maculatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.807 Å
Deposited: 2023-11-03
Authors: Busa, M., Mares, M.
PDB entry 8r29: Crystal structure of domain swapped dimer of Amacstatin-2, a cystatin from the hard tick Amblyomma maculatum
Classification: PROTEIN BINDING
Source organism: Amblyomma maculatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.146 Å
Deposited: 2023-11-03
Authors: Busa, M., Mares, M.
PDB entry 8r2a: CpKRS complexed with lysine and an inhibitor
Classification: LIGASE
Source organism: Cryptosporidium parvum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-11-03
Authors: Dawson, A., Baragana, B., Caldwell, N.
PDB entry 8r2b: X-ray crystallographic structure of SnoaL2 in complex with the polyketide substrate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces nogalater
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-03
Authors: Schnell, R., Schneider, G.
PDB entry 8r2c: Crystal structure of the Vint domain from Tetrahymena thermophila
Classification: UNKNOWN FUNCTION
Source organism: Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-03
Authors: Iwai, H., Beyer, H.M., Johannson, J.E., Li, M., Wlodawer, A.
PDB entry 8r2d: Integrator cleavage module assembly intermediate
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-11-03
Authors: Sabath, K., Qiu, C., Jonas, S.
PDB entry 8r2e: X-ray crystallographic structure of SnoaL2 in complex with the polyketide reaction product
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces nogalater
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-04
Authors: Schnell, R., Schneider, G.
PDB entry 8r2f: human carbonic anhydrase II in complex with 4-(((dimethoxyphosphoryl)(4-((dimethoxyphosphoryl)((4-sulfamoylphenyl)amino)methyl)phenyl)methyl)amino)phenyl sulfuramidite
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-11-04
Authors: Angeli, A., Ferraroni, M.
PDB entry 8r2g: Crystal structure of a BRCA2-DMC1 complex
Classification: RECOMBINATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2023-11-05
Authors: Dunce, J.M., Davies, O.R.
PDB entry 8r2h: Cryo-EM structure of 1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Plasmodium falciparum
Classification: TRANSFERASE
Source organism: Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2023-11-06
Authors: Gawriljuk, V.O., Godoy, A.S., Oerlemans, R., Groves, M.R.
PDB entry 8r2i: Cryo-EM Structure of native Photosystem II assembly intermediate from Chlamydomonas reinhardtii
Classification: PHOTOSYNTHESIS
Source organism: Chlamydomonas reinhardtii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-11-06
Authors: Fadeeva, M., Klaiman, D., Kandiah, E., Nelson, N.
PDB entry 8r2j: X-ray crystallographic structure of SwaQ2 in complex with NADP+ and doxorubicin
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces swartbergensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-11-06
Authors: Schnell, R., Schneider, G.
PDB entry 8r2k: Human Carbonic Anhydrase II in complex with 4-((2-oxo-5-(3,4,5-trimethoxyphenyl)-2,5-dihydrofuran-3-yl)amino)benzenesulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-06
Authors: Angeli, A., Ferraroni, M.
PDB entry 8r2l: Crystal structure of the ectodomain of TBEV E protein (Sofjin strain)
Classification: VIRAL PROTEIN
Source organism: Tick-borne encephalitis virus (STRAIN SOFJIN)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-11-06
Authors: Vlaskina, A.V., Samygina, V.R.
PDB entry 8r2m: Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD N-terminal domain and an upstream-fork promoter fragment; State III conformation
Classification: TRANSCRIPTION
Source organism: Mycolicibacterium smegmatis MC2 155; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-11-06
Authors: Koval, T., Krasny, L., Dohnalek, J., Kouba, T.
PDB entry 8r2n: Structure of the BeeR filament
Classification: STRUCTURAL PROTEIN
Source organism: Opitutus terrae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-07
Authors: Bergeron, J.R.C., Kollman, J.M.
PDB entry 8r2o: Huntingtin-Q17, 1-66, N-MBP fusion
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.23 Å
Deposited: 2023-11-07
Authors: Toledo-Sherman, L., Dominguez, C.
PDB entry 8r2p: YZwIdeal x16 a scaffold for cryo-EM of small proteins of interest crystallizing in space group 19 (P 21 21 21)
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2023-11-07
Authors: Moche, M., Friberg, O., Nygren, P.A., Nilvebrant, J.
PDB entry 8r2q: Mycobacterium tuberculosis fatty acyl CoA synthetase, FadD5
Classification: LIGASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-11-07
Authors: Rahman, M.A., Dalwani, S., Venkatesan, R.
PDB entry 8r2r: N-terminal domain of the Mycobacterium tuberculosis fatty acyl CoA synthetase, FadD5
Classification: LIGASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2023-11-07
Authors: Rahman, M.A., Dalwani, S., Venkatesan, R.
PDB entry 8r2s: Heme-dependent l-tyrosine hydroxylase (TyrH) from Streptomyces sclerotialus: fourfold mutant
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sclerotialus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-11-07
Authors: Carraretto, D., Mattevi, A.
PDB entry 8r2t: Crystal structure of 4-hydroxybenzoate-1-hydroxylase from Gelatoporia subvermispora (GsMNX1)
Classification: OXIDOREDUCTASE
Source organism: Gelatoporia subvermispora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.824 Å
Deposited: 2023-11-07
Authors: Zahn, M., Kuatsjah, E., Salvachua, D.
PDB entry 8r2u: Crystal structure of hydroquinone-2-hydroxylase from Trametes versicolor (TvMNX3)
Classification: OXIDOREDUCTASE
Source organism: Trametes versicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2023-11-07
Authors: Zahn, M., Kuatsjah, E., Salvachua, D.
PDB entry 8r2v: Crystal structure of hydroxyquinol-1,2-dioxygenase from Gelatoporia subvermispora (GsHDX1)
Classification: OXIDOREDUCTASE
Source organism: Gelatoporia subvermispora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-11-07
Authors: Zahn, M., Kuatsjah, E., Salvachua, D.
PDB entry 8r2w: Crystal structure of hydroxyquinol-1,2-dioxygenase from Trametes versicolor (TvHDX1)
Classification: OXIDOREDUCTASE
Source organism: Trametes versicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-11-07
Authors: Zahn, M., Kuatsjah, E., Salvachua, D.
PDB entry 8r2x: Crystal structure of hydroxyquinol-1,2-dioxygenase from Rhodococcus jostii RHA1 (RjTsdC)
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus jostii RHA1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.573 Å
Deposited: 2023-11-07
Authors: Zahn, M., Kuatsjah, E., Salvachua, D.
PDB entry 8r2y: Structure of CTX-M-15 complexed with benzoxaborole AK-29
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2023-11-08
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 8r2z: Structure of CTX-M-15 complexed with benzoxaborole AK-425
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-11-08
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 8r30: Structure of CTX-M-15 complexed with benzoxaborole AK-408
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 0.85 Å
Deposited: 2023-11-08
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 8r31: Structure of CTX-M-15 complexed with benzoxaborole AK-412
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-11-08
Authors: Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 8r32: Crystal structure of the GluK2 ligand-binding domain in complex with L-glutamate and BPAM344 at 1.60 A resolution
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-11-08
Authors: Bay, Y., Jeppesen, M.E., Frydenvang, K., Kastrup, J.S.
PDB entry 8r33: CryoEM structure of the symmetric Pho90 dimer from yeast without substrates.
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2023-11-08
Authors: Schneider, S., Kuehlbrandt, W., Yildiz, O.
PDB entry 8r34: CryoEM structure of the symmetric Pho90 dimer from yeast with substrates.
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2023-11-08
Authors: Schneider, S., Kuehlbrandt, W., Yildiz, O.
PDB entry 8r35: CryoEM structure of the asymmetric Pho90 dimer from yeast without substrates.
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-11-08
Authors: Schneider, S., Kuehlbrandt, W., Yildiz, O.
PDB entry 8r36: Crystal structure of the Gluk1 ligand-binding domain in complex with kainate and BPAM538 at 1.90 A resolution
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-11-08
Authors: Bay, Y., Frantsen, S.M., Frydenvang, K., Kastrup, J.S.
PDB entry 8r37: Klebsiella pneumoniae fosfomycin-resistance protein (FosAKP)
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-11-08
Authors: Papageorgiou, A.C., Varotsou, C., Labrou, N.E.
PDB entry 8r38: BIIG2 anti-integrin Fab
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2023-11-08
Authors: Cordara, G., Heim, J.B., Johannesen, H., Krengel, U.
PDB entry 8r39: Full-length LpMIP mutant Y16F
Classification: STRUCTURAL PROTEIN
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-08
Authors: Whittaker, J.J., Guskov, A.
PDB entry 8r3a: NT-26 Arsenite oxidase B F108C-G123C
Classification: OXIDOREDUCTASE
Source organism: Pseudorhizobium banfieldiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.894 Å
Deposited: 2023-11-08
Authors: Engrola, F., Santos-Silva, T., Correia, M.A.S., Romao, M.J.
PDB entry 8r3b: Cocrystal form I of the Pent - sulfonato-calix[8]arene complex
Classification: SUGAR BINDING PROTEIN
Source organism: Enterobacteria phage L1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-11-08
Authors: Flood, R.J., Crowley, P.B.
PDB entry 8r3c: Cocrystal form II of the Pent - sulfonato-calix[8]arene complex
Classification: SUGAR BINDING PROTEIN
Source organism: Enterobacteria phage L1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-11-08
Authors: Flood, R.J., Crowley, P.B.
PDB entry 8r3d: Crystal structure of Pent only at pH 8.8
Classification: SUGAR BINDING PROTEIN
Source organism: Enterobacteria phage L1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-11-08
Authors: Flood, R.J., Crowley, P.B.
PDB entry 8r3e: Huntingtin, 1-17, MBP-N
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2023-11-08
Authors: Steinbacher, S., Toledo-Sherman, L., Dominguez, C.
PDB entry 8r3f: C-terminal Rel-homology Domain of NFAT1
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-11-08
Authors: Zak, K.M., Boettcher, J.
PDB entry 8r3g: Central glycolytic genes regulator (CggR) bound to DNA operator
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-11-09
Authors: Skerlova, J., Soltysova, M., Rezacova, P., Skubnik, K.
PDB entry 8r3h: Phalloidin bound F-actin
Classification: CYTOSOLIC PROTEIN
Source organism: Gallus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-11-09
Authors: Yuan, B., Paraschiakos, T., Windhorst, S., Marlovits, T.C.
PDB entry 8r3i: Proof of concept study of a probe molecule in TbPTR1
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-11-09
Authors: Dawson, A., GIlbert, I.H., Montagna, S.
PDB entry 8r3k: Influenza A/H7N9 polymerase in self-stalled pre-termination state, with Pol II pS5 CTD peptide mimic bound in site 1A/2A.
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9)); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-11-09
Authors: Arragain, B., Cusack, S.
PDB entry 8r3l: Influenza A/H7N9 polymerase in pre-initiation state, intermediate conformation (I) with PB2-C(I), ENDO(T), and Pol II pS5 CTD peptide mimic bound in site 1A/2A
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9)); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-11-09
Authors: Arragain, B., Cusack, S.
PDB entry 8r3m: Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD N-terminal, CO and PCh loop domain, and an upstream-fork promoter fragment; State III conformation
Classification: TRANSCRIPTION
Source organism: Mycolicibacterium smegmatis MC2 155; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-11-09
Authors: Koval, T., Krasny, L., Dohnalek, J., Kouba, T.
PDB entry 8r3n: Crystal structure of PfpI, Pseudomonas aeruginosa PAO1
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-11-10
Authors: Grimm, L., Wijaya, A.J.
PDB entry 8r3o: Transketolase from Haemophilus influenzae in complex with thiamin pyrophosphate
Classification: CYTOSOLIC PROTEIN
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-11-10
Authors: Ballut, L., Georges, R.N., Aghajari, N., Hecquet, L., Charmantray, F., Doumeche, B.
PDB entry 8r3p: Transketolase from Enterococcus faecium in complex with thiamin pyrophosphate
Classification: CYTOSOLIC PROTEIN
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-11-10
Authors: Ballut, L., Georges, R.N., Aghajari, N., Hecquet, L., Charmantray, F., Doumeche, B.
PDB entry 8r3q: Transketolase from Plasmodium falciparum in complex with thiamin pyrophosphate
Classification: CYTOSOLIC PROTEIN
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-11-10
Authors: Ballut, L., Georges, R.N., Aghajari, N., Hecquet, L., Charmantray, F., Doumeche, B.
PDB entry 8r3r: Transketolase from Streptococcus pneumoniae in complex with thiamin pyrophosphate
Classification: CYTOSOLIC PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-11-10
Authors: Ballut, L., Georges, R.N., Aghajari, N., Hecquet, L., Charmantray, F., Doumeche, B.
PDB entry 8r3s: Transketolase from Staphylococcus aureus in complex with thiamin pyrophosphate
Classification: CYTOSOLIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-11-10
Authors: Ballut, L., Georges, N., Aghajari, N., Hecquet, L., Charmantray, F., Doumeche, B.
PDB entry 8r3t: Cofactor-free Tau 4R2N isoform
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-11-10
Authors: Limorenko, G., Tatli, M., Kolla, R., Nazarov, S., Weil, M.T., Schondorf, D.C., Geist, D., Reinhardt, P., Ehrnhoefer, D.E., Stahlberg, H., Gasparini, L., Lashuel, H.A.
PDB entry 8r3u: Crystal structure of DHPS in complex with an inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-11-10
Authors: Turnbull, A.P.
PDB entry 8r3v: Escherichia coli paused disome complex (non-rotated disome interface)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-11-10
Authors: Fluegel, T., Schacherl, M.
PDB entry 8r3w: Crystal structure of a homospecific CR57 diabody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-11-10
Authors: Kedari, A., Rissanen, I.
PDB entry 8r3x: Crystal structure of aPKC Iota kinase domain with LLGL2 peptide
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.591 Å
Deposited: 2023-11-10
Authors: Soriano, E.V., Earl, C.P., Briggs, D.C., McDonald, N.Q.
PDB entry 8r3y: Cryo EM structure of a stable LGL/aPKC Iota/Par-6 complex
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-11-10
Authors: Earl, C.P., Briggs, D.C., McDonald, N.Q.
PDB entry 8r3z: Cryo-EM structure of the Asgard archaeal Argonaute HrAgo1 bound to a guide RNA
Classification: RNA BINDING PROTEIN
Source organism: Candidatus Harpocratesius repetitus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-11-10
Authors: Finocchio, G., Swarts, D., Jinek, M.
PDB entry 8r40: Crystal structure of diabody CR57 in complex with rabies virus protein G domain III
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Rabies virus CVS-11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-11-10
Authors: Kedari, A., Rissanen, I.
PDB entry 8r41: Structure of CHI3L1 in complex with inhibitor 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-11-10
Authors: Nowak, E., Napiorkowska-Gromadzka, A., Nowotny, M.
PDB entry 8r42: Structure of CHI3L1 in complex with inhibititor 2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-11-10
Authors: Nowak, E., Napiorkowska-Gromadzka, A., Nowotny, M.
PDB entry 8r43: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H110N in complex with tri-mannuronic acid
Classification: LYASE
Source organism: Paradendryphiella salina
Experimental method: X-RAY DIFFRACTION
Resolution: 0.87 Å
Deposited: 2023-11-12
Authors: Wilkens, C.
PDB entry 8r44: PAS-GAF bidomain of Glycine max phytochrome A
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-11-13
Authors: Guan, K., Nagano, S., Hughes, J.
PDB entry 8r45: Phytochromobilin-adducted PAS-GAF bidomain of Glycine max phytochrome A
Classification: PLANT PROTEIN
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-11-13
Authors: Guan, K., Chen, P., Nagano, S., Hughes, J.
PDB entry 8r47: AL amyloid fibril from the FOR010 light chain
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2023-11-13
Authors: Pfeiffer, P.B., Banerjee, S., Schmidt, M., Faendrich, M.
PDB entry 8r48: Structure of plastidial phosphorylase Pho1 from Solanum tuberosum at 2.2 Angstrom resolution
Classification: TRANSFERASE
Source organism: Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2023-11-13
Authors: Koulas, S.M., Leonidas, D.D.
PDB entry 8r49: Plastidial phosphorylase Pho1 from Solanum tuberosum in complex with beta cyclodextrin
Classification: TRANSFERASE
Source organism: Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-11-13
Authors: Koulas, S.M., Leonidas, D.D.
PDB entry 8r4a: Cryo-EM structure of the D87G lysozyme amyloid fibril
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-11-13
Authors: Karimi-Farsijani, S., Sharma, K., Schmidt, M., Faendrich, M.
PDB entry 8r4b: Roco protein from C. tepidum in the GTP state bound to the activating Nanobodies NbRoco1 and NbRoco2
Classification: HYDROLASE
Source organism: Chlorobaculum tepidum; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-11-13
Authors: Galicia, C., Versees, W.
PDB entry 8r4c: LRR domain of Roco protein from C. tepidum bound to the activating Nanobody NbRoco2
Classification: HYDROLASE
Source organism: Chlorobaculum tepidum; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2023-11-13
Authors: Galicia, C., Versees, W.
PDB entry 8r4d: Focused map on the Roc-COR domains of the Roco protein from C. tepidum in the GTP state bound to the activating Nanobody NbRoco1
Classification: HYDROLASE
Source organism: Chlorobaculum tepidum; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-11-13
Authors: Galicia, C., Versees, W.
PDB entry 8r4e: Hybrid-1R G-quadruplex with a +(lpp) loop progression
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-11-13
Authors: Jana, J., Vianney, Y.M., Weisz, K.
PDB entry 8r4f: Crystal structure of the native copper efflux oxidase (CueO) from Hafnia alvei
Classification: METAL BINDING PROTEIN
Source organism: Hafnia alvei
Experimental method: X-RAY DIFFRACTION
Resolution: 3.186 Å
Deposited: 2023-11-13
Authors: Leone, P., Contaldo, U.
PDB entry 8r4g: Plastidial phosphorylase Pho1 from Solanum tuberosum in complex with a-D-glucose
Classification: TRANSFERASE
Source organism: Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-11-13
Authors: Koulas, S.M., Leonidas, D.D.
PDB entry 8r4h: Crystal structure of the copper efflux oxidase (CueO) from Hafnia alvei deleted of the Met-rich domain
Classification: METAL BINDING PROTEIN
Source organism: Hafnia alvei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.937 Å
Deposited: 2023-11-13
Authors: Leone, P., Contaldo, U.
PDB entry 8r4i: Cryo-EM structure of human islet amyloid polypeptide (hIAPP)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2023-11-13
Authors: Ooi, S.A., Valli, D., Maj, M.
PDB entry 8r4j: Plastidial phosphorylase Pho1 from Solanum tuberosum in complex with caffeine
Classification: TRANSFERASE
Source organism: Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2023-11-13
Authors: Koulas, S.M., Leonidas, D.D.
PDB entry 8r4k: Plastidial phosphorylase Pho1 trimer from Solanum tuberosum
Classification: TRANSFERASE
Source organism: Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-11-13
Authors: Koulas, S.M., Leonidas, D.D.
PDB entry 8r4l: CSP1 M48L mutant without Iodide
Classification: METAL BINDING PROTEIN
Source organism: Methylosinus trichosporium OB3b
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-14
Authors: Basle, A., David, S., Dennison, C.
PDB entry 8r4m: CSP1 M48L mutant with Iodide
Classification: METAL BINDING PROTEIN
Source organism: Methylosinus trichosporium OB3b
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-11-14
Authors: Basle, A., David, S., Dennison, C.
PDB entry 8r4n: Crystal structure of neutralizing Fab Eq4.Dp46-3A from equine antivenom bound to short chain three finger alpha-neurotoxin from Dendroaspis polylepis.
Classification: ANTITOXIN
Source organism: Dendroaspis polylepis; Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-11-14
Authors: Wibmer, C.K.
PDB entry 8r4o: Salt inducible kinase 3 in complex with inhibitor
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.725 Å
Deposited: 2023-11-14
Authors: Kack, H., Oster, L.
PDB entry 8r4p: Structure of BabA from Helicobacter pylori strain 17875
Classification: CELL ADHESION
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-11-14
Authors: Persson, K., Boren, T., Bugaytsova, J.
PDB entry 8r4q: Salt inducible kinase 3 in complex with inhibitor
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.838 Å
Deposited: 2023-11-14
Authors: Kack, H., Oster, L.
PDB entry 8r4u: Structure of salt-inducible kinase 3 with inhibitors
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.416 Å
Deposited: 2023-11-14
Authors: Kack, H., Oster, L.