LiteFold/PDB huggingface dataset:
PDB entry 9lvj: Cryo-EM structure of Sestrin2 bound human GATOR2 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2025-02-12
Authors: Su, M.-Y.
PDB entry 9lvk: Cryo-EM structure of CASTOR1 bound human GATOR2 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2025-02-12
Authors: Su, M.-Y.
PDB entry 9lvn: Crystal structure of phospholipase D SkPLD (Streptomyces klenkii)
Classification: HYDROLASE
Source organism: Streptomyces klenkii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-02-12
Authors: Hu, R.K., Feng, C.H.
PDB entry 9lvp: Crystal structure of estrogen related receptor-alpha DNA binding domain complexed with MPC1 promoter
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2025-02-12
Authors: Xu, T., Gan, Q., Liu, J.
PDB entry 9lvq: Room temperature structure of the human heart fatty acid-binding protein complexed with octanoic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2025-02-12
Authors: Sugiyama, S., Kakinouchi, K., Maekawa, S., Matsuoka, S., Murata, M.
PDB entry 9lvr: Crystal structure of SARS-CoV-2 3CL protease in complex with compound 1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-12
Authors: Unoh, Y., Hirai, K., Uehara, S., Kawashima, S., Nobori, H., Sato, J., Shibayama, H., Hori, A., Nakahara, K., Kurahashi, K., Takamatsu, M., Yamamoto, S., Zhang, O., Tanimura, M., Dodo, R., Maruyama, Y., Sawa, H., Watari, R., Miyano, T., Kato, T., Sato, T., Tachibana, Y.
PDB entry 9lvs: Cryo-EM structure of the SARS-CoV-2 spike protein in complex with S416
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-02-12
Authors: Fang, Y., Binghao, Z.
PDB entry 9lvt: Crystal structure of SARS-CoV-2 3CL protease in complex with compound 4
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-12
Authors: Unoh, Y., Hirai, K., Uehara, S., Kawashima, S., Nobori, H., Sato, J., Shibayama, H., Hori, A., Nakahara, K., Kurahashi, K., Takamatsu, M., Yamamoto, S., Zhang, O., Tanimura, M., Dodo, R., Maruyama, Y., Sawa, H., Watari, R., Miyano, T., Kato, T., Sato, T., Tachibana, Y.
PDB entry 9lvu: Crystal structure of de novo design trimer protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-12
Authors: Zhao, L.
PDB entry 9lvv: Crystal structure of SARS-CoV-2 3CL protease in complex with compound 17 (S-892216)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-02-12
Authors: Unoh, Y., Hirai, K., Uehara, S., Kawashima, S., Nobori, H., Sato, J., Shibayama, H., Hori, A., Nakahara, K., Kurahashi, K., Takamatsu, M., Yamamoto, S., Zhang, O., Tanimura, M., Dodo, R., Maruyama, Y., Sawa, H., Watari, R., Miyano, T., Kato, T., Sato, T., Tachibana, Y.
PDB entry 9lvw: Cryo-EM structure of G6PT1 in complex with phosphate ion
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-02-12
Authors: Zhao, Y., Chen, Q.
PDB entry 9lvx: di-hexamer form of insulin detemir at ambient temperature
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-02-13
Authors: Ayan, E., Bahar, I.
PDB entry 9lvy: hexamer form of insulin detemir at ambient temperature
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-02-13
Authors: Ayan, E., Bahar, I.
PDB entry 9lvz: Crystal Structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix 323K
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-02-13
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9lw0: Cytochrome P450PL2 from Parvibaculum lavamentivorans DS-1
Classification: OXIDOREDUCTASE
Source organism: Parvibaculum lavamentivorans DS-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2025-02-13
Authors: Cui, H.B.
PDB entry 9lw1: TMEM164-substrate
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-02-13
Authors: Zhang, M.F.
PDB entry 9lw5: Cryo-EM structure of dopamine bound mut-beta2-Adrenergic Receptor beta2R-M16-miniGs-Gbeta1gamma2-Nb35-scFv16 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-02-13
Authors: Zhang, X., Gao, K., Liu, X.
PDB entry 9lw6: Top cap of bacteriophage Mycofy1 mature head (C5 symmetry)
Classification: VIRAL PROTEIN
Source organism: Mycolicibacterium phage Mycofy1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2025-02-13
Authors: Li, X., Shao, Q., Li, L., Xie, L., Ruan, Z., Fang, Q.
PDB entry 9lw7: Midsection of bacteriophage Mycofy1 mature head (C5 symmetry)
Classification: VIRAL PROTEIN
Source organism: Mycolicibacterium phage Mycofy1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-02-13
Authors: Li, X., Shao, Q., Li, L., Xie, L., Ruan, Z., Fang, Q.
PDB entry 9lw8: Bottom cap of bacteriophage Mycofy1 mature head (C5 symmetry)
Classification: VIRAL PROTEIN
Source organism: Mycolicibacterium phage Mycofy1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2025-02-13
Authors: Li, X., Shao, Q., Li, L., Xie, L., Ruan, Z., Fang, Q.
PDB entry 9lw9: Bacteriophage Mycofy1 proximal head-to-tail interface (C6 symmetry)
Classification: VIRAL PROTEIN
Source organism: Mycolicibacterium phage Mycofy1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-02-13
Authors: Li, X., Shao, Q., Li, L., Xie, L., Ruan, Z., Fang, Q.
PDB entry 9lwa: Bacteriophage Mycofy1 distal head-to-tail interface (C6 symmetry)
Classification: VIRAL PROTEIN
Source organism: Mycolicibacterium phage Mycofy1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-02-13
Authors: Li, X., Shao, Q., Li, L., Xie, L., Ruan, Z., Fang, Q.
PDB entry 9lwb: Crystal Structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix 293K
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-02-14
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9lwc: Cryo-EM structure of epinephrine bound dopamine receptor 1 D1R-M74-miniGs-Gbeta1gamma2-Nb35 complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-14
Authors: Zhang, X., Gao, K., Liu, X.
PDB entry 9lwf: Cryo-EM structure of dual sensor bound GATOR2 complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-02-14
Authors: Su, M.-Y.
PDB entry 9lwg: Zebrafish ovum lysosomal peptide:N-glycanase
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-02-14
Authors: Honda, A., Kamada, K., Burton-Smith, R.N., Murata, K., Suzuki, T.
PDB entry 9lwi: The head region of HBx-Smc5/6 ubiquitination complex
Classification: ANTIVIRAL PROTEIN
Source organism: Hepatitis B virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-02-15
Authors: Tong, C., Lili, D., Hongshuai, L., Jinhong, Z., Qian, X., Lanfeng, W.
PDB entry 9lwj: The head-arm region of HBx-Smc5/6 ubiquitination complex
Classification: ANTIVIRAL PROTEIN
Source organism: Hepatitis B virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.19 Å
Deposited: 2025-02-15
Authors: Tong, C., Lili, D., Hongshuai, L., Jinhong, Z., Qian, X., Lanfeng, W.
PDB entry 9lwk: The hinge-arm region of HBx-Smc5/6 ubiquitination complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.32 Å
Deposited: 2025-02-15
Authors: Tong, C., Lili, D., Hongshuai, L., Jinhong, Z., Qian, X., Lanfeng, W.
PDB entry 9lwl: HBx-Smc5/6 ubiquitination complex
Classification: ANTIVIRAL PROTEIN
Source organism: Hepatitis B virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.25 Å
Deposited: 2025-02-15
Authors: Tong, C., Lili, D., Hongshuai, L., Jinhong, Z., Qian, X., Lanfeng, W.
PDB entry 9lwm: Crystal structure of reduced state of the thioredoxin gluthathione reductase from Schistosoma japonicum SjTGR-WT
Classification: OXIDOREDUCTASE
Source organism: Schistosoma japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.026 Å
Deposited: 2025-02-15
Authors: Wang, S.Q., Huang, S.Q., Lin, T.W.
PDB entry 9lwn: Nonamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-02-15
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9lwo: Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.77 Å
Deposited: 2025-02-15
Authors: Zhao, Q., Lin, S., Xu, Q., Wu, J.
PDB entry 9lwp: Cryo-EM structure of the unliganded human BRS3-Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Oplophorus gracilirostris; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-02-16
Authors: Li, J., Li, C., Zhou, Q., Han, W., Fang, M., Xu, Y., Mai, Y., Cui, J., Xu, H., Zhang, Y., Wang, M.
PDB entry 9lwq: Cryo-EM structure of PI3Kalpha in complex with compound UCL-TRO-1938
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-02-16
Authors: Liu, X., Zhou, Q.
PDB entry 9lwr: Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-16
Authors: Liu, X., Zhou, Q.
PDB entry 9lws: Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-02-16
Authors: Liu, X., Zhou, Q.
PDB entry 9lwu: Cryo-EM structure of HRD1-SEL1LX3-XTP3B complex in C2 symmetry
Classification: ANTIBIOTIC
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-17
Authors: Qian, H.W., Liu, G.Y.
PDB entry 9lwv: Arginine bis-prenyltransferase DciF
Classification: TRANSFERASE
Source organism: Dolichospermum circinale
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-02-17
Authors: Mori, T., Taniguchi, T., Matsuda, K., Wakimoto, T., Abe, I.
PDB entry 9lww: Crystal structure of dehydrogenase/isomerase FabX from Helicobacter pylori in complex with inhibitor 47
Classification: BIOSYNTHETIC PROTEIN
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-17
Authors: Zhang, L., Zhang, L.
PDB entry 9lwx: Crystal structure of the Filamin A repeat 21
Classification: SIGNALING PROTEIN
Source organism: Esselenichthys carli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2025-02-17
Authors: Mao, Z.F., Yirong, L.
PDB entry 9lwy: Crystal structure of human WDR5 in complex with compound 4
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-02-17
Authors: Cao, Y., Zhang, X.L., Bai, F.
PDB entry 9lwz: Crystal structure of the oxidized state of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation SjTGR-U597C-oxidized
Classification: OXIDOREDUCTASE
Source organism: Schistosoma japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.074 Å
Deposited: 2025-02-17
Authors: Wang, S.Q., Huang, S.Q., Lin, T.W.
PDB entry 9lx0: DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.98 Å
Deposited: 2025-02-17
Authors: Shinoda, T., Katsura, K., Kukimoto-Niino, M., Shirouzu, M.
PDB entry 9lx1: anti-CRISPR-associated protein, Aca7
Classification: DNA BINDING PROTEIN
Source organism: Halomonas caseinilytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-02-17
Authors: Lee, S.Y., Park, H.H.
PDB entry 9lx2: anti-CRISPR-associated protein, Aca11
Classification: DNA BINDING PROTEIN
Source organism: Streptococcus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-02-17
Authors: Lee, S.Y., Park, H.H.
PDB entry 9lx4: Crystal structure of the de novo designed protein ZZ4
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-02-17
Authors: Zhao, Z., Hattori, M.
PDB entry 9lx5: Cryo-EM structure of the P2X1 receptor bound to ATP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-17
Authors: Qiang, Y., Chen, K.
PDB entry 9lxc: Cryo-EM structure of the P2X1 receptor bound to NF449
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-17
Authors: Qiang, Y., Chen, K.
PDB entry 9lxd: Structure of DNA-free MCM SH at 3.2 Angstroms resolution
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-02-18
Authors: Liu, Y., Lu, P., Yang, M., Gao, H., Yu, H.
PDB entry 9lxe: Structure of compacted DNA-free MCM DH at 3.9 Angstroms resolution
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2025-02-18
Authors: Liu, Y., Lu, P., Yang, M., Gao, H., Yu, H.
PDB entry 9lxf: Structure of extended DNA-free MCM DH at 3.8 Angstroms resolution
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2025-02-18
Authors: Liu, Y., Lu, P., Yang, M., Gao, H., Yu, H.
PDB entry 9lxg: Filamin A repeat 21 in complex with LARP4 Ala269-Asn281 peptide
Classification: PROTEIN BINDING
Source organism: Esselenichthys carli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2025-02-18
Authors: Mao, Z.F., Yuanyuan, D.
PDB entry 9lxh: DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.52 Å
Deposited: 2025-02-18
Authors: Shinoda, T., Katsura, K., Kukimoto-Niino, M., Shirouzu, M.
PDB entry 9lxl: Crystal structure of GH29 family alpha-L-fucosidase from Fusarium proliferatum LE1
Classification: HYDROLASE
Source organism: Gibberella intermedia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.191 Å
Deposited: 2025-02-18
Authors: Korban, S.A., Borshchevskiy, V.I., Pospelov, V.A., Bobrov, K.S., Ivanova, D.N., Kulminskaya, A.A.
PDB entry 9lxn: Human RNA Polymerase III de novo transcribing complex 5 (TC5)(without 3'dATP)
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-02-18
Authors: Wang, Q., Ren, Y., Jin, Q., Chen, X., Xu, Y.
PDB entry 9lxo: Human RNA Polymerase III de novo transcribing complex 6 (TC6)(without 3'dATP)
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-18
Authors: Wang, Q., Ren, Y., Jin, Q., Chen, X., Xu, Y.
PDB entry 9lxp: A Cryo-EM structure of LA-PTH-PTH1R-Beta-arrestin1 complex (state 2 conformation)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-19
Authors: Zhao, L., Yuan, Q.
PDB entry 9lxq: Crystal structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix complex with 5'-Deoxy-5'-methylthioadenosine 100K
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-02-19
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9lxr: A Cryo-EM structure of LA-PTH-PTH1R-Beta-arrestin1 complex (state 1 conformation)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-02-19
Authors: Zhao, L., Yuan, Q.
PDB entry 9ly2: A Cryo-EM structure of LA-PTH-PTH1R-V2RT-Beta-arrestin1 complex (state 1 conformation)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-19
Authors: Zhao, L., Yuan, Q.
PDB entry 9ly3: A Cryo-EM structure of LA-PTH-PTH1R-V2RT-Beta-arrestin1 complex (state 2 conformation)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-19
Authors: Zhao, L., Yuan, Q.
PDB entry 9ly4: Photo-crosslinkable oligonucleotodes which have a trioxsalen conjugated to C2' position of guanosine
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2025-02-19
Authors: Mikame, Y., Kanazawa, H., Kondo, J., Yamayoshi, A.
PDB entry 9ly5: antibody 20G5 Fab in complex with human B7-H3 (IgC)
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-02-19
Authors: Bin, L., Shuaixiang, Z., kaijie, H.
PDB entry 9ly6: antibody 20G5 (Fab')2 in complex with human B7-H3
Classification: ANTITUMOR PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2025-02-19
Authors: Li, B., Zhou, S., He, K.
PDB entry 9ly8: Cryo-EM structure of carboxysomal midi-shell: T=9 shell under C1 symmetry
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus c2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-02-19
Authors: Li, J.X., Li, T.P., Wang, S.M., Zhang, Y.Z., Liu, L.N., Wang, P.
PDB entry 9ly9: Cryo-EM structure of carboxysomal mid-shell: T = 16 shell under C1 symmetry.
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus c2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2025-02-19
Authors: Li, J.X., Li, T.P., Wang, S.M., Zhang, Y.Z., Liu, L.N., Wang, P.
PDB entry 9lyb: Cryo-EM structure of GPR3-G protein-monomer complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-02-19
Authors: Hua, T., Liu, Z.J., Li, X.T., Chang, H.
PDB entry 9lyc: Cryo-EM structure of GPR3-G protein-dimer complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-02-19
Authors: Hua, T., Liu, Z.J., Li, X.T., Chang, H.
PDB entry 9lyd: Cryo-EM structure of GPR3-1IU9 complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2025-02-19
Authors: Hua, T., Liu, Z.J., Li, X.T., Chang, H.
PDB entry 9lye: Crystal Structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix 100K
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-02-20
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9lyf: Structure-based Discovery of Novel non-Covalent Small Molecule Inhibitors of USP30
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2025-02-20
Authors: Anantharajan, J., Baburajendran, N.
PDB entry 9lyg: Crystal structure of FKBP12 complexed with Small Molecule Anchor for Protein-201
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2025-02-20
Authors: Kato, S., Tsuchikawa, H., Katoh, A., Matsuoka, S., Sugiyama, S.
PDB entry 9lyh: Solution NMR structure of the rosin A1 lanthipeptide
Classification: UNKNOWN FUNCTION
Source organism: Microbispora rosea
Experimental method: SOLUTION NMR
Deposited: 2025-02-20
Authors: Yao, H., Xie, X., Wang, H.
PDB entry 9lyi: Cryo-EM structure of collagenase H (E416Q mutant) from Hathewaya histolytica in complex with collagen model peptide (Pro-Hyp-Gly)12
Classification: METAL BINDING PROTEIN
Source organism: Hathewaya histolytica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-20
Authors: Oki, H., Kawahara, K.
PDB entry 9lyj: Cryo-EM structure of MdtF
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-02-20
Authors: Dutta, S., Padmanaban, S., Fernando, R.C.
PDB entry 9lyl: The X-ray diffraction structure of photosensitizer protein PSP2
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-02-20
Authors: Zhao, Y.M., Qi, C.
PDB entry 9lym: Functional characterization of type III polyketide synthases involved in tropane alkaloid biosynthesis in Brassicaceae
Classification: BIOSYNTHETIC PROTEIN
Source organism: Cochlearia officinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-02-20
Authors: Yan, Y.J., Huang, S.X.
PDB entry 9lyo: Alpha SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-02-20
Authors: Kocharovskaya, M.V., Pichkur, E.B., Shenkarev, Z.O., Lyukmanova, E.N.
PDB entry 9lyp: Alpha SARS-CoV-2 spike protein RBD-down in complex with REGN10987 Fab homologue (local refinement)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-02-20
Authors: Kocharovskaya, M.V., Pichkur, E.B., Shenkarev, Z.O., Lyukmanova, E.N.
PDB entry 9lyq: Structure of RND efflux pump MdtB
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-02-20
Authors: Dutta, S., Padmanaban, S., Fernando, R.C.
PDB entry 9lys: Crystal structure of de novo designed amantadine binding homotrimer dAIT03
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-20
Authors: Qihan, J., Longxing, C.
PDB entry 9lyt: The crystal structure of Mucuna sempervirens Pathogenesis-related protein 1
Classification: PLANT PROTEIN
Source organism: Mucuna sempervirens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-21
Authors: Zha, H.G., Fan, S.L.
PDB entry 9lyu: Crystal structure of glycerol kinase from Entamoeba histolytica (Ligand-free form)
Classification: TRANSFERASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-21
Authors: Balogun, E.O., Jeelani, G., Hane, E., Kondo, H., Hasegawa, Y., Kojima, C., Chishima, T., Harada, S., Kishikawa, J., Nozaki, T., Shiba, T.
PDB entry 9lyv: structure of prrx bound to DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2025-02-21
Authors: Dong, C., Yan, X.J., Guo, S.M., Huang, Y.L.
PDB entry 9lyy: Crystal structure of glycerol kinase from Entamoeba histolytica complexed with ADP and G3P.
Classification: TRANSFERASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-02-21
Authors: Balogun, E.O., Jeelani, G., Hane, E., Kondo, H., Hasegawa, Y., Kojima, C., Chishima, T., Harada, S., Kishikawa, J., Nozaki, T., Shiba, T.
PDB entry 9lyz: X-RAY CRYSTALLOGRAPHY OF THE BINDING OF THE BACTERIAL CELL WALL TRISACCHARIDE NAM-NAG-NAM TO LYSOZYME
Classification: HYDROLASE (O-GLYCOSYL)
Source organism: GALLUS GALLUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1979-12-06
Authors: Kelly, J.A., James, M.N.G.
PDB entry 9lz0: Cryo-EM structure of PTH1R-beta-arrestin1 complex in state 1
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-02-21
Authors: Zhai, X., Guo, J., Shen, Q., Chen, L., Wang, G., Shen, D., Zhang, C., Xu, X., Mao, C., Zhang, Y., Liu, Z.
PDB entry 9lz1: Cryo-EM structure of PTH1R-beta-arrestin1 complex in state 2
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-02-21
Authors: Zhai, X., Guo, J., Shen, Q., Chen, L., Wang, G., Shen, D., Zhang, C., Xu, X., Mao, C., Zhang, Y., Liu, Z.
PDB entry 9lz2: Cryo-EM structure of PTH1R(V2RC)-beta-arrestin1 complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-02-21
Authors: Zhai, X., Guo, J., Shen, Q., Chen, L., Wang, G., Shen, D., Zhang, C., Xu, X., Mao, C., Zhang, Y., Liu, Z.
PDB entry 9lz3: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured by mix-and-inject serial crystallography at 100-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lz4: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured by mix-and-inject serial crystallography at 200-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lz5: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured by mix-and-inject serial crystallography at 300-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lz6: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured by mix-and-inject serial crystallography at 400-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lz7: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured with short-a-axis diffraction data by mix-and-inject serial crystallography at 22-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lz8: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured with long-a-axis diffraction data by mix-and-inject serial crystallography at 22-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lz9: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured with short-a-axis diffraction data by mix-and-inject serial crystallography at 25-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lza: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured with long-a-axis diffraction data by mix-and-inject serial crystallography at 25-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lzb: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured with short-a-axis diffraction data by mix-and-inject serial crystallography at 50-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lzc: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured with long-a-axis diffraction data by mix-and-inject serial crystallography at 50-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lzd: Oxidative form of copper amine oxidase from Arthrobacter globiformis determined at pH 9.0 by single-flow serial crystallography
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lze: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured by mix-and-inject serial crystallography at 500-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lzf: Reductive-half reaction intermediate of copper amine oxidase from Arthrobacter globiformis captured by mix-and-inject serial crystallography at 1000-ms time delay
Classification: OXIDOREDUCTASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-02-21
Authors: Murakawa, T., Okajima, T.
PDB entry 9lzg: Crystal structure of glycerol kinase from Entamoeba histolytica complexed with daphnetin.
Classification: TRANSFERASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-21
Authors: Balogun, E.O., Jeelani, G., Hane, E., Kondo, H., Hasegawa, Y., Kojima, C., Chishima, T., Harada, S., Kishikawa, J., Nozaki, T., Shiba, T.
PDB entry 9lzi: Crystal structure of glycerol kinase from Entamoeba histolytica complexed with GK-butyl.
Classification: TRANSFERASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-02-21
Authors: Balogun, E.O., Jeelani, G., Hane, E., Kondo, H., Hasegawa, Y., Kojima, C., Chishima, T., Harada, S., Kishikawa, J., Nozaki, T., Shiba, T.
PDB entry 9lzj: The PSI3-IsiA43 complex with a closed double ring of IsiA proteins bound to a trimeric PSI core
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus vestitus BP-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-21
Authors: Si, L., Cao, P., Li, M.
PDB entry 9lzk: The PSI1-IsiA13 complex with double-layered IsiA proteins bound to the monomeric PSI core
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus vestitus BP-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-21
Authors: Si, L., Cao, P., Li, M.
PDB entry 9lzl: Flat-contact of Flock House Virus early disassembly intermediate
Classification: VIRUS
Source organism: Flock house virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-22
Authors: Lokshman, M.K., Kumar, D., Borkotoky, S., Banerjee, M.
PDB entry 9lzp: Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-02-22
Authors: Jiang, H.H., Zhang, J., Li, J.
PDB entry 9lzq: Crystal structure of SARS main protease in complex with Ibuzatrelvir Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-02-22
Authors: Li, W.W., Zhang, J., Li, J.
PDB entry 9lzt: RfxCas13d-crRNA binary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ruminococcus sp. XPD3002; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-22
Authors: Yang, Q.X., Sun, Y.F.
PDB entry 9lzu: RfxCas13d-crRNA-target RNA ternary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ruminococcus sp. XPD3002; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-22
Authors: Yang, Q.X., Sun, Y.F.
PDB entry 9lzv: Crystal structure of human glutaminyl cyclase in complex with Inhibitor M-42
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2025-02-22
Authors: Li, G.-B., Meng, F.-B., Mou, J.
PDB entry 9lzw: Bent-contact of Flock House Virus early disassembly intermediate
Classification: VIRUS
Source organism: Flock house virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-22
Authors: Lokshman, M.K., Kumar, D., Borkotoky, S., Banerjee, M.
PDB entry 9lzx: Crystal structure of the OTU domain of OTULIN in complex with 11B6
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-22
Authors: Zhang, M., Huang, H.
PDB entry 9lzy: Cryo-EM structure of homomeric TRPC channel with agonists, class 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2025-02-22
Authors: Park, H., Kim, S.-H., Lee, H.H.
PDB entry 9lzz: Cryo-EM structure of homomeric TRPC channel with agonists, class 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-02-22
Authors: Park, H., Kim, S.-H., Lee, H.H.
PDB entry 9m00: Crystal Structure of the Basal pilin EbpB from Enterococcus faecalis with a partially disordered N-terminal domain.
Classification: CELL ADHESION
Source organism: Enterococcus faecalis OG1RF
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-02-23
Authors: Sharma, V., Krishnan, V.
PDB entry 9m01: Crystal structure of the SLA-1*0808 allele and ASFV antigenic peptide at 1.8 A resolution
Classification: IMMUNE SYSTEM
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-02-23
Authors: Wang, S., Zhang, N.
PDB entry 9m05: Cryo-EM structure of dVGAC complexed with iodide
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2025-02-23
Authors: Lu, P.L., Zhou, C.
PDB entry 9m06: Outer membrane lipoprotein QseG of Salmonella enterica serovar Typhimurium SL1344
Classification: SIGNALING PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-24
Authors: Gao, X., Li, G.B., Gong, P.Q.
PDB entry 9m07: Histidine kinase QseE sensor domain of Salmonella Typhimurium SL1344
Classification: SIGNALING PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-02-24
Authors: Gao, X., Li, G.B., Gong, P.Q.
PDB entry 9m08: Structure of outer membrane lipoprotein QseG and histidine kinase QseE complex
Classification: SIGNALING PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-02-24
Authors: Gao, X., Li, G.B., Gong, P.Q.
PDB entry 9m09: Structure of TqaM from Penicillium aethiopicum in complex with substrate
Classification: METAL BINDING PROTEIN
Source organism: Penicillium aethiopicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2025-02-24
Authors: Wang, H., Mori, T., Abe, I.
PDB entry 9m0a: Structure of TqaM from Penicillium aethiopicum in complex with D-(+)-3-phenyllactic acid
Classification: METAL BINDING PROTEIN
Source organism: Penicillium aethiopicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-02-24
Authors: Wang, H., Mori, T., Abe, I.
PDB entry 9m0b: Crystal structure of alpha-agarase AGA from Catenovulum maritimum
Classification: HYDROLASE
Source organism: Catenovulum maritimum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2025-02-24
Authors: Zhang, X.M., Li, W.H., Han, X.D.
PDB entry 9m0d: Cryo-EM structure of neurotensin receptor 1 in complex with beta-arrestin 1
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-02-24
Authors: Sun, D.M., Li, X., Yuan, Q.N., Tian, C.L.
PDB entry 9m0e: Enhancing the synthesis efficiency of galacto-oligosaccharides of a beta-galactosidase from Paenibacillus barengoltzii by engineering the active and distal sites
Classification: HYDROLASE
Source organism: Paenibacillus barengoltzii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-24
Authors: Yu, H.Y., Wang, Y.L., Yang, Z.S., Liu, X., Xin, F.J.
PDB entry 9m0i: Structure of the intermediate of lactoperoxidase formed with thiocynate and hydrogen peroxidase at 1.99 A resolution.
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.995 Å
Deposited: 2025-02-24
Authors: Viswanathan, V., Maurya, A., Sirohi, H.V., Kushwaha, G.S., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 9m0j: Cryo-EM structure of Bombesin receptor type-3 bound to oridonin
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-02-24
Authors: Li, C., Xu, Y., Yin, W., Xu, H.
PDB entry 9m0k: Crystal structure of the WRKY DNA-binding domain in complex with the W-box DNA motif
Classification: DNA BINDING PROTEIN/DNA
Source organism: Gossypium hirsutum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-02-25
Authors: Liu, Y.L., Xiao, Q., Shang, X.C.
PDB entry 9m0l: Crystal structure of Arabidopsis thaliana sulfotransferase SOT18 complexed with glucoraphanin precursor involved in glucosinolate biosynthesis
Classification: CYTOSOLIC PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-02-25
Authors: Hirata, R., Moriyasu, T., Iwamoto, Y., Teramoto, T., Kakuta, Y.
PDB entry 9m0m: Crystal structure of a thermophilic family II inorganic pyrophosphatase in Thermodesulfobacterium commune
Classification: CYTOSOLIC PROTEIN
Source organism: Thermodesulfobacterium commune
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-02-25
Authors: Maruoka, S., Teramoto, T., Watanabe, K., Kakuta, Y.
PDB entry 9m0o: Crystal structure of OPTN 138-170 in complex with GTP-bound RAB8A1-176 (Q67L)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-02-25
Authors: Okatsu, K., Fukai, S.
PDB entry 9m0p: Cryo-EM structure of human 80S ribosome in complex with montanine
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-02-25
Authors: Sakai, R., Tanaka, Y., Sato, K., Tsugita, A., Matumoto, K., Thaveepornkul, L., Chimnaronk, S., Takada, A., Miyamoto, H., Kurokawa, R., Yoshida, M., Yokoyama, T., Evidente, A., Tsuge, Y., Watari, H., Sumiya, T.
PDB entry 9m0q: The Structural Complex of Inactivated Lactobacillus delbrueckii Cystathionine beta-Lyase Mutant (LdPatB A34D) with Its Substrate L-(+)-Alliin
Classification: BIOSYNTHETIC PROTEIN
Source organism: Lactobacillus delbrueckii subsp. lactis DSM 20072
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2025-02-25
Authors: Liu, Y., Yang, C.
PDB entry 9m0r: Structure of neuropeptide FF receptor 1 complex with NPVF
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2025-02-25
Authors: Pan, B.X., Jiang, Y., Li, X.Z.
PDB entry 9m0s: Acetyl-CoA-bound SLC33A1 in a cytoplasm-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-02-25
Authors: Zhou, D., Zhang, Z.
PDB entry 9m0t: Crystal structure of Glyoxylate/Hydroxypyruvate Reductase in complex from Bacillus subtilis with formate at near-atomic resolution
Classification: OXIDOREDUCTASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2025-02-25
Authors: Nguyen, T.Q., Kang, W.
PDB entry 9m0u: Structural insights into the tumor suppressor ZMYND11 reveal diverse recognition mechanisms
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-02-25
Authors: Bai, X., Chen, Z.
PDB entry 9m0v: Crystal structure of Glyoxylate/Hydroxypyruvate Reductase in complex from Bacillus subtilis with formate and NADPH at near-atomic resolution
Classification: OXIDOREDUCTASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-25
Authors: Nguyen, T.Q., Kang, W.
PDB entry 9m0x: Cryo-EM structure of the agmatine-bound zTAAR13d-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2025-02-25
Authors: Zheng, Y., Zhao, S.W.
PDB entry 9m0y: Local refinement of stacked like DDB1-DDA1-DET1-Ube2e2-COP1 complex (layer 2)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.25 Å
Deposited: 2025-02-25
Authors: Su, M.-Y.
PDB entry 9m0z: Cryo-EM structure of the cadaverine-bound zTAAR13d-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-02-25
Authors: Zheng, Y., Zhao, S.W.
PDB entry 9m10: Vitamin D receptor complex with a dimethylbis((3-trifluoromethyl)phenyl)silane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m11: Vitamin D receptor complex with a bis(3-chlorophenyl)dimethylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m12: Vitamin D receptor complex with a bis(3-ethylphenyl)dimethylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m13: Vitamin D receptor complex with a dimethyldiphenylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m14: Vitamin D receptor complex with a dimethyldi(m-tolyl)silane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m15: Vitamin D receptor complex with a dimethyldi(o-tolyl)silane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m16: Vitamin D receptor complex with a bis(2,3-dimethylphenyl)dimethylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m17: Vitamin D receptor complex with a bis(3,5-dimethylphenyl)dimethylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m18: Vitamin D receptor complex with a diallyldiphenylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m19: Vitamin D receptor complex with a dibutyldiphenylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m1a: Vitamin D receptor complex with a diethyldiphenylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m1b: Vitamin D receptor complex with a diphenydipropylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m1c: Vitamin D receptor complex with a triphenylpropylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.