LiteFold/PDB huggingface dataset:
PDB entry 8u84: KCTD5/Cullin3/Gbeta1gamma2 Complex: State D From Composite RELION Multi-body Refinement Map
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-09-15
Authors: Kuntz, D.A., Nguyen, D.M., Narayanan, N., Prive, G.G.
PDB entry 8u85: Structural Basis of Human NOX5 Activation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-15
Authors: Cui, C., Jiang, M., Sun, J.
PDB entry 8u86: Structural Basis of Human NOX5 Activation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-15
Authors: Cui, C., Jiang, M., Sun, J.
PDB entry 8u87: Structural Basis of Human NOX5 Activation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2023-09-16
Authors: Cui, C., Jiang, M., Sun, J.
PDB entry 8u89: The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-16
Authors: Wu, C.G., Xing, Y.
PDB entry 8u8a: Cryo-EM structure of LRRK2 bound to type II inhibitor ponatinib
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-16
Authors: Zhu, H., Sun, J.
PDB entry 8u8b: Cryo-EM structure of LRRK2 bound to type II inhibitor rebastinib
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-16
Authors: Zhu, H., Sun, J.
PDB entry 8u8c: Crystal structure of the TREX-2 complex in complex with the N-terminal motif of Sub2
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-09-17
Authors: Xie, Y., Ren, Y.
PDB entry 8u8d: Cryo-EM structure of the TREX-2 complex in complex with the N-terminal motif of Sub2
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-09-17
Authors: Clarke, B.P., Xie, Y., Ren, Y.
PDB entry 8u8e: Cryo-EM structure of the TREX-2 complex in association with Sub2
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-09-17
Authors: Clarke, B.P., Xie, Y., Ren, Y.
PDB entry 8u8f: GPR3 Orphan G-coupled Protein Receptor in complex with Dominant Negative Gs.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-09-17
Authors: Russell, I.C., Belousoff, M.J., Sexton, P.
PDB entry 8u8h: The structure of flightin within myosin thick filaments from Drosophila melanogaster flight muscle
Classification: STRUCTURAL PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2023-09-18
Authors: Abbasi Yeganeh, F., Rastegarpouyani, H., Li, J., Taylor, K.A.
PDB entry 8u8i: Cdc48-Shp1 unfolding native substrate, Class 4
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-18
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8u8j: Co-crystal structure of phosphorylated ERK2 in complex with ERK1/2 inhibitor #16
Classification: SIGNALING PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-18
Authors: Anderson, J.W., Vigers, G.P.
PDB entry 8u8k: Co-crystal structure of phosphorylated ERK2 in complex with ERK1/2 inhibitor #8
Classification: SIGNALING PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-18
Authors: Anderson, J.W., Vigers, G.P.
PDB entry 8u8l: X-ray crystal structure of TEBP-2 MCD3 with ds DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-18
Authors: Nandakumar, J., Padmanaban, S.
PDB entry 8u8m: X-ray crystal structure of TEBP-1 MCD2 homodimer
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-09-18
Authors: Nandakumar, J., Padmanaban, S.
PDB entry 8u8o: Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, octamer-centered
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-09-18
Authors: Calise, S.J., Kollman, J.M.
PDB entry 8u8p: S292F Streptomyces coelicolor Laccase
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-18
Authors: Wang, J.-X., Lu, Y.
PDB entry 8u8q: V290N/S292F Streptomyces coelicolor Laccase
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-09-18
Authors: Wang, J.-X., Lu, Y.
PDB entry 8u8r: Y229F/V290N/S292F Streptomyces coelicolor Laccase
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2023-09-18
Authors: Wang, J.-X., Lu, Y.
PDB entry 8u8s: Y229F/S292F Streptomyces coelicolor Laccase
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2023-09-18
Authors: Wang, J.-X., Lu, Y.
PDB entry 8u8t: Y229F/V290N Streptomyces coelicolor Laccase
Classification: OXIDOREDUCTASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-09-18
Authors: Wang, J.-X., Lu, Y.
PDB entry 8u8u: Cryo-EM Structure of Cognate Substrate ATP Bound in the Entry Site (ES) of Human Mitochondrial Transcription Elongation Complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-18
Authors: Herbine, K.H., Nayak, A.R., Temiakov, D.
PDB entry 8u8v: Cryo-EM structure of Substrate ATP Bound in the Insertion Site (IS) of Human Mitochondrial Transcription Elongation Complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2023-09-18
Authors: Herbine, K.H., Nayak, A.R., Temiakov, D.
PDB entry 8u8w: Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate and halides bound)
Classification: LIPID TRANSPORT
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u8x: crystal structure of the receptor tyrosine kinase Human HER2 (ERBB2) YVMA mutant kinase domain in complex with inhibitor compound 27
Classification: SIGNALING PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-09-18
Authors: Wang, J., Mou, T.C.
PDB entry 8u8y: Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, interface-centered
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-09-18
Authors: Calise, S.J., Kollman, J.M.
PDB entry 8u8z: Cryo-EM structure of PsBphP in Pr state, extended DHp
Classification: PLANT PROTEIN
Source organism: Pseudomonas syringae pv. tomato str. DC3000
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-09-18
Authors: Basore, K., Burgie, E.S., Vierstra, D.
PDB entry 8u90: Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (Apo, hexagonal form)
Classification: LIPID TRANSPORT
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u91: Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (Apo, Orthorhombic P form)
Classification: LIPID TRANSPORT
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u92: Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate bound, Orthorhombic P form)
Classification: LIPID TRANSPORT
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u93: Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (PEG bound)
Classification: LIPID TRANSPORT
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u94: Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (ADP Bound)
Classification: TRANSFERASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u95: The structure of myosin heavy chain from Drosophila melanogaster flight muscle thick filaments
Classification: STRUCTURAL PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2023-09-18
Authors: Abbasi Yeganeh, F., Rastegarpouyani, H., Li, J., Taylor, K.A.
PDB entry 8u96: Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (ATP bound)
Classification: TRANSFERASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u97: Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (AMP-PNP bound)
Classification: TRANSFERASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u98: Crystal Structure of Cystathionine beta lyase from Klebsiella aerogenes (PLP-Glycine adduct)
Classification: LIGASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u99: Crystal Structure of Cystathionine beta lyase from Klebsiella aerogenes (PLP-Serine adduct)
Classification: LIGASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u9a: Crystal Structure of 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase from Klebsiella aerogenes (DBH bound)
Classification: LIGASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u9b: Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (Apo, P21 Form)
Classification: OXIDOREDUCTASE
Source organism: Klebsiella aerogenes KCTC 2190
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-18
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8u9c: Cdc48-Shp1 unfolding native substrate, Class 5
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-19
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8u9e: Crystal Structure of Staphylococcus aureus Pdx1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2023-09-19
Authors: Barra, A.L.C., Nascimento, A.S.
PDB entry 8u9f: Crystal structure of Bacteroides thetaiotamicron BT1285 in complex with NaI
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2023-09-19
Authors: Sastre, D.E., Navarro, M.V.A.S., Sundberg, E.J.
PDB entry 8u9g: Human Class I MHC HLA-A2 bound to sorting nexin 24 (127-135) neoantigen KLSHQLVLL
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2023-09-19
Authors: Arbuiso, A., Weiss, L.I., Brambley, C.A., Ma, J., Keller, G.L.J., Ayres, C.M., Baker, B.M.
PDB entry 8u9h: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI64
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-19
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8u9i: Pasteurella multocida alpha2,3/2,6 sialyltransferase D141N bound to CMP
Classification: SUGAR BINDING PROTEIN
Source organism: Pasteurella multocida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-09-19
Authors: Stubbs, H.E., Iverson, T.M.
PDB entry 8u9j: The crystal structure of iron-bound human ADO C18S C239S variant at 2.02 Angstrom
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-09-19
Authors: Liu, A., Li, J., Duan, R.
PDB entry 8u9k: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI94
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-19
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8u9l: Crystal Structure of RelA-cRel chimera complex with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.091 Å
Deposited: 2023-09-19
Authors: Chang, A., Wu, Y., Li, S.X., Smale, S., Chen, L.
PDB entry 8u9m: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI95
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-19
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8u9n: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI64
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-19
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8u9o: Solution structure of RsgI9 CRE domain from C. thermocellum
Classification: SIGNALING PROTEIN
Source organism: Acetivibrio thermocellus DSM 1313
Experimental method: SOLUTION NMR
Deposited: 2023-09-19
Authors: Takayesu, A., Mahoney, B.J., Clubb, R.T.
PDB entry 8u9p: Cdc48-Shp1 unfolding native substrate, Class 2
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-19
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8u9q: Cdc48-Shp1 unfolding native substrate, Class 6
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-09-19
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8u9r: STRUCTURAL BASIS OF TRANSCRIPTION: RNA POLYMERASE II SUBSTRATE BINDING AND METAL COORDINATION USING A FREE-ELECTRON LASER
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.34 Å
Deposited: 2023-09-20
Authors: Arjunan, P., Calero, G., Kaplan, C.D.
PDB entry 8u9s: Cryo-EM structure of NRCAM nucleosome aided by scFv
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-09-20
Authors: Zhou, B.R., Bai, Y.
PDB entry 8u9t: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI97
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-09-20
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8u9u: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI98
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-20
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8u9v: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI101
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-09-20
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8u9w: Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI105
Classification: VIRAL PROTEIN, Hydrolase/Inhibitor
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-20
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8u9x: STRUCTURAL BASIS OF TRANSCRIPTION: RNA POLYMERASE II SUBSTRATE BINDING AND METAL COORDINATION AT 3.0 A OF T834P MUTANT USING A FREE-ELECTRON LASER
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-09-20
Authors: Arjunan, P., Calero, G., Kaplan, C.D.
PDB entry 8u9y: CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2_New interface
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Hepacivirus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-20
Authors: Shahid, S., Liqun, J., Liu, Y., Hasan, S.S., Mariuzza, R.A.
PDB entry 8u9z: Cdc48-Shp1 unfolding native substrate, Class 7
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-09-20
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8ua0: Cdc48-Shp1 unfolding native substrate, Class 8
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-20
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8ua1: Cdc48-Shp1 unfolding native substrate, Class 9
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-20
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8ua2: Crystal Structure of infected cell protein 0 (ICP0) from herpes simplex virus 1 (proteolyzed fragment)
Classification: PROTEIN BINDING
Source organism: Human alphaherpesvirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-09-20
Authors: Lovell, S., Kashipathy, M., Battaile, K.P., Cooper, A., Davido, D.
PDB entry 8ua3: Cryo-EM Structure of FBOX22-BACH1BTB
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-09-20
Authors: Shi, H., Cao, S., Zheng, N.
PDB entry 8ua4: Structure of eastern equine encephalitis virus VLP in complex with VLDLR LA1
Classification: VIRUS LIKE PARTICLE
Source organism: Eastern equine encephalitis virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-09-20
Authors: Abraham, J., Yang, P., Li, W., Fan, X., Pan, J.
PDB entry 8ua5: Crystal Structure of infected cell protein 0 (ICP0) from herpes simplex virus 1 (A636-Q776)
Classification: PROTEIN BINDING
Source organism: Human alphaherpesvirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-09-20
Authors: Lovell, S., Kashipathy, M., Battaile, K.P., Cooper, A., Davido, D.
PDB entry 8ua6: Cryo-EM Structure of SCF-FBOX22-BACH1BTB
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-09-20
Authors: Shi, H., Cao, S., Zheng, N.
PDB entry 8ua7: Medusavirus Nucleosome Core Particle
Classification: DNA BINDING PROTEIN/DNA
Source organism: Medusavirus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-20
Authors: Toner, C.M., Hoitsma, N.M., Weerawarana, S., Luger, K.
PDB entry 8ua8: Structure of Semliki Forest virus VLP in complex with VLDLR LA2
Classification: VIRUS LIKE PARTICLE
Source organism: Homo sapiens; Semliki Forest virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-20
Authors: Abraham, J., Yang, P., Li, W., Fan, X., Pan, J.
PDB entry 8ua9: Structure of eastern equine encephalitis virus VLP unliganded quasi-threefold spike protein
Classification: VIRUS LIKE PARTICLE
Source organism: Eastern equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-20
Authors: Abraham, J., Yang, P., Li, W., Fan, X., Pan, J.
PDB entry 8uaa: Cdc48-Shp1 unfolding native substrate, Class 3
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-20
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8uab: SARS-CoV-2 main protease (Mpro) complex with AC1115
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.781 Å
Deposited: 2023-09-20
Authors: DuPrez, K.T., Chao, A., Han, F.Q.
PDB entry 8uac: CATHEPSIN L IN COMPLEX WITH AC1115
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-20
Authors: Chao, A., DuPrez, K.T., Han, F.Q.
PDB entry 8uad: Cryo-EM structure of prefusion-stabilized influenza B hemagglutinin
Classification: VIRAL PROTEIN
Source organism: Influenza B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-09-20
Authors: Juraszek, J., Milder, F.J., Yu, X., Blokland, S., Overveld, D., Tamara, S., Bakkers, M.J.G., Rutten, L., Sharma, S., Langedijk, J.P.M.
PDB entry 8uae: E. coli Sir2_HerA complex (12:6) with ATPgamaS
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-09-20
Authors: Shen, Z.F., Lin, Q.P., Fu, T.M.
PDB entry 8uaf: E. coli Sir2_HerA complex (12:6) bound with NAD+
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-09-20
Authors: Shen, Z.F., Lin, Q.P., Fu, T.M.
PDB entry 8uag: Sucrose-phosphate synthase-like protein from Leishmania major
Classification: SUGAR BINDING PROTEIN
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-09-21
Authors: Gorman, M.A., Parker, M.W., McConville, M.J.
PDB entry 8uah: Structure of BACH1 BTB domain-bound FBXL17 ubiquitin ligase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-21
Authors: Shi, H., Cao, S., Zheng, N.
PDB entry 8uai: Crystal structure of hetero hexameric hazelnut allergen Cor a 9
Classification: ALLERGEN
Source organism: Corylus avellana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-09-21
Authors: Zhang, Y.Z., Guo, F.
PDB entry 8uaj: Succinate Bound Crystal Structure of Thermus scotoductus SA-01 Ene-reductase
Classification: OXIDOREDUCTASE
Source organism: Thermus scotoductus SA-01
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-09-21
Authors: Wilson, L.A., Guddat, L., Schenk, G., Scott, C.
PDB entry 8uak: Crystal structure of the catalytic domain of human PKC alpha (D463N, V568I, S657E) in complex with Darovasertib (NVP-LXS196) at 2.82-A resolution
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2023-09-21
Authors: Romanowski, M.J., Lam, J., Visser, M.
PDB entry 8uan: The crystal structure of cobalt-bound human ADO C18S C239S variant at 1.99 Angstrom
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-09-21
Authors: Liu, A., Li, J., Duan, R., Shin, I.
PDB entry 8uao: DpHF18 filament
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-09-21
Authors: Lynch, E.M., Shen, H., Kollman, J.M., Baker, D.
PDB entry 8uap: Crystal Structure of Human G Protein-Coupled Receptor Kinase 5 D311N in Complex with CCG273441
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-09-21
Authors: Chen, Y., Tesmer, J.J.G.
PDB entry 8uaq: Crystal Structure of Human G Protein-Coupled Receptor Kinase 5 in Complex with GRL018-21
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-09-21
Authors: Chen, Y., Tesmer, J.J.G.
PDB entry 8uar: Rhodococcus ruber Alcohol Dehydrogenase NADH Biomimetic Complex - Compound 4b
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus ruber
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-09-22
Authors: Wilson, L.A., Schenk, G., Guddat, L.W., Scott, C.
PDB entry 8uas: Rhodococcus ruber Alcohol Dehydrogenase NADH Biomimetic Complex - Compound 1a
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus ruber
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-22
Authors: Wilson, L.A., Guddat, L.W., Schenk, G., Scott, C.
PDB entry 8uat: Thermus scotoductus SA-01 Ene-reductase Compound 3b Complex
Classification: FLAVOPROTEIN
Source organism: Thermus scotoductus SA-01
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2023-09-22
Authors: Wilson, L.A., Guddat, L.W., Schenk, G., Scott, C.
PDB entry 8uau: human ATE1 in complex with Arg-tRNA and a peptide substrate
Classification: TRANSFERASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2023-09-22
Authors: Huang, W., Zhang, Y., Taylor, D.J.
PDB entry 8uav: Cryo-EM Structure of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin I subunit B (Stx1B)
Classification: TOXIN
Source organism: Brucella abortus biovar 1 (strain 9-941) ; Escherichia coli O157:H7
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2023-09-22
Authors: Cristofalo, A.E., Sharma, A., Cerutti, M.L., Sharma, K., Zylberman, V., Goldbaum, F.A., Borgnia, M.J., Otero, L.H.
PDB entry 8uaw: Cryo-EM Structure of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin II subunit B (Stx2B)
Classification: TOXIN
Source organism: Brucella abortus bv. 1 str. 9-941; Escherichia coli O157:H7
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-09-22
Authors: Cristofalo, A.E., Sharma, A., Cerutti, M.L., Sharma, K., Zylberman, V., Goldbaum, F.A., Borgnia, M.J., Otero, L.H.
PDB entry 8uax: Structure of Alanyl-5'-O-adenosine phosphoramidate/RNase A
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-22
Authors: Pallan, P.S., Egli, M.
PDB entry 8uay: Structure of Arginyl-5'-O-adenosine phosphoramidate/RNase A
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-22
Authors: Pallan, P.S., Egli, M.
PDB entry 8uaz: Structure of Glutamyl-5'-O-adenosine phosphoramidate/RNase A
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-09-22
Authors: Pallan, P.S., Egli, M.
PDB entry 8ub0: Structure of Histidine-5'-O-adenosine phosphoramidate/RNase A
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-22
Authors: Pallan, P.S., Egli, M.
PDB entry 8ub1: Structure of Butyl-5'-O-adenosine phosphoramidate/RNase A
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-09-22
Authors: Pallan, P.S., Egli, M.
PDB entry 8ub2: Structure of Adenosine monophosphate/RNase A
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-09-22
Authors: Pallan, P.S., Egli, M.
PDB entry 8ub3: DpHF7 filament
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-22
Authors: Lynch, E.M., Farrell, D., Shen, H., Kollman, J.M., DiMaio, F., Baker, D.
PDB entry 8ub4: Cdc48-Shp1 unfolding native substrate, consensus structure
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-22
Authors: Cooney, I., Schubert, H.L., Cedeno, K., Carson, R., Fisher, O.N., Price, J.C., Hill, C.P., Shen, P.S.
PDB entry 8ub5: The Apo NanH structure from Clostridium perfringens
Classification: HYDROLASE
Source organism: Clostridium perfringens ATCC 13124
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-22
Authors: Medley, B.J., Boraston, A.B.
PDB entry 8ub6: Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA H62X, containing 3-methylhistidine at position 62
Classification: LUMINESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-22
Authors: Henderson, J.N., Mills, J.H.
PDB entry 8ub7: Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active state (N-occupied)
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; Methylorubrum extorquens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8ub8: Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 1a
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; Methylorubrum extorquens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8ub9: Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase- Active state (N-empty) 1a
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; Methylorubrum extorquens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8uba: Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active state 1b
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; Methylorubrum extorquens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8ubb: Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active State (N-empty) 1b
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; Methylorubrum extorquens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8ubc: Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1b
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8ubd: Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 2
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; Methylorubrum extorquens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8ube: Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1a
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; Methylorubrum extorquens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8ubf: Diversity-generating retroelement (DGR) ribonucleoprotein - Resting state 1c
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bordetella phage BPP-1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2023-09-22
Authors: Biswas, T., Handa, S., Ghosh, P.
PDB entry 8ubg: DpHF19 filament
Classification: DE NOVO PROTEIN
Source organism: Aequorea victoria; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-22
Authors: Lynch, E.M., Shen, H., Kollman, J.M., Baker, D.
PDB entry 8ubh: Solution NMR structure of KaiB variant from Thermosynechococcus elongatus vestitus (KaiBTV-4)
Classification: SIGNALING PROTEIN
Source organism: Thermosynechococcus vestitus BP-1
Experimental method: SOLUTION NMR
Deposited: 2023-09-23
Authors: Ojoawo, A., Wayment-Steele, H.K., Kern, D.
PDB entry 8ubi: Cryo-EM structure of NRCAM nucleosome aided by scFv (Class_A)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-23
Authors: Zhou, B.R., Bai, Y.
PDB entry 8ubj: Cryo-EM structure of NRCAM nucleosome aided by scFv (3D Flex map)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-23
Authors: Zhou, B.R., Bai, Y.
PDB entry 8ubk: Cryo-EM structure of Ascl1/E12a in complex with NRCAM nucleosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-09-23
Authors: Zhou, B.R., Bai, Y.
PDB entry 8ubl: Cryo-EM structure of Ascl1/E12a in complex with NRCAM nucleosome (3D Flex map)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-09-23
Authors: Zhou, B.R., Bai, Y.
PDB entry 8ubq: EcDsbA soaked with N-(2-fluorophenyl)-5-methylisoxazole-3-carboxamide and 2-benzyl-4-phenylthiazole-5-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2023-09-24
Authors: Wang, G., Heras, B.
PDB entry 8ubr: Complex of the phosphorylated human cystic fibrosis transmembrane conductance regulator (CFTR) with CFTRinh-172 and ATP/Mg
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-09-24
Authors: Young, P.G., Fiedorczuk, K., Chen, J.
PDB entry 8ubs: Crystal structure of NrdJ-1 split intein fusion
Classification: SPLICING
Source organism: marine metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-09-24
Authors: Kofoed, C., Ye, X., Jeffrey, P.D., Muir, T.W.
PDB entry 8ubt: Structure of SCF-FBXL17-BACH1BTB E3 ligase complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-24
Authors: Shi, H., Cao, S.
PDB entry 8ubu: Cryo-EM structure of dimeric SCF-FBXL17-BACH1BTB E3 ligase complex close conformation
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2023-09-25
Authors: Shi, H., Cao, S., Zheng, N.
PDB entry 8ubv: Cryo-EM structure of dimeric FBXL17-BACH1BTB E3 ubiquitin ligase complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-09-25
Authors: Shi, H., Cao, S., Zheng, N.
PDB entry 8ubw: Choline-bound FLVCR1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-09-25
Authors: Hite, R.K., Son, Y.
PDB entry 8ubx: Ethanolamine-bound FLVCR1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-09-25
Authors: Hite, R.K., Son, Y.
PDB entry 8uby: Choline-bound FLVCR1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2023-09-25
Authors: Hite, R.K., Son, Y.
PDB entry 8ubz: Choline-bound FLVCR1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-09-25
Authors: Hite, R.K., Son, Y.
PDB entry 8uc0: Endogenous ligand bound FLVCR1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2023-09-25
Authors: Hite, R.K., Son, Y.
PDB entry 8uc1: Cryo-EM structure of dolphin Prestin in low Cl buffer
Classification: MEMBRANE PROTEIN
Source organism: Tursiops truncatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-09-25
Authors: Haller, P., Bavi, N., Perozo, E.
PDB entry 8uc2: Ethylene forming enzyme (EFE) R171A variant in complex with nickel and Benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas savastanoi pv. phaseolicola
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-09-25
Authors: Chatterjee, S., Rankin, J.A., Hu, J., Hausinger, R.
PDB entry 8uc3: Cryo-EM structure of the AlbAB cyclodipeptide oxidase enzyme filament
Classification: OXIDOREDUCTASE
Source organism: Streptomyces noursei ATCC 11455
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-09-25
Authors: Andreas, M.P., Giessen, T.W.
PDB entry 8uc4: Apo X-ray crystal structure of Cyclophilin D with a surface entropy reduction mutation (K175I)
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-09-25
Authors: Kreitler, D.F., Rangwala, A.M., Seeliger, M.A.
PDB entry 8uc5: Apo X-ray crystal structure of Cyclophilin D with a surface entropy reduction mutation (K175I)
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-09-25
Authors: Kreitler, D.F., Rangwala, A.M., Seeliger, M.A.
PDB entry 8uc6: Calpain-7:IST1 Complex
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.701 Å
Deposited: 2023-09-25
Authors: Paine, E., Whitby, F.G., Hill, C.P., Sunquist, W.I.
PDB entry 8uc7: HCN1 complex with propofol
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-09-25
Authors: Kim, E.D., Nimigean, C.M.
PDB entry 8uc8: HCN1 nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-25
Authors: Kim, E.D., Nimigean, C.M.
PDB entry 8uc9: SOS2 co-crystal structure with fragment bound (compound 9)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-09-26
Authors: Gunn, R.J., Lawson, J.D.
PDB entry 8uca: Formation of I2+III2 supercomplex rescues respiratory chain defects
Classification: ELECTRON TRANSPORT, Translocase
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-26
Authors: Letts, J.A., Padavannil, A.
PDB entry 8ucb: IRAK4 in complex with compound 8
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-26
Authors: Metrick, C.M., Chodaparambil, J.V.
PDB entry 8ucc: IRAK4 in complex with compound 20
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-26
Authors: Metrick, C.M., Chodaparambil, J.V.
PDB entry 8ucd: Cryo-EM structure of human STEAP1 in complex with AMG 509 Fab
Classification: membrane protein/immune system
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-09-26
Authors: Li, F., Bailis, J.M., Zhang, H.
PDB entry 8uce: Thermophilic RNA Ligase from Palaeococcus pacificus + AMP
Classification: LIGASE
Source organism: Palaeococcus pacificus DY20341
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-09-26
Authors: Rousseau, M.D., Hicks, J.L., Oulavallickal, T., Williamson, A., Arcus, V.L., Patrick, M.W.
PDB entry 8ucf: Thermophilic RNA Ligase from Palaeococcus pacificus K238G
Classification: LIGASE
Source organism: Palaeococcus pacificus DY20341
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-26
Authors: Rousseau, M.D., Hicks, J.L., Oulavallickal, T., Williamson, A., Arcus, V.L., Patrick, M.W.
PDB entry 8ucg: Thermophilic RNA Ligase from Palaeococcus pacificus K92A
Classification: LIGASE
Source organism: Palaeococcus pacificus DY20341
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-09-26
Authors: Rousseau, M.D., Hicks, J.L., Oulavallickal, T., Williamson, A., Arcus, V.L., Patrick, M.W.
PDB entry 8uch: Thermophilic RNA Ligase from Palaeococcus pacificus K92A + ATP
Classification: LIGASE
Source organism: Palaeococcus pacificus DY20341
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-09-26
Authors: Rousseau, M.D., Hicks, J.L., Oulavallickal, T., Williamson, A., Arcus, V.L., Patrick, M.W.
PDB entry 8uci: Thermophilic RNA Ligase from Palaeococcus pacificus K238G + AMP
Classification: LIGASE
Source organism: Palaeococcus pacificus DY20341
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-09-26
Authors: Rousseau, M.D., Hicks, J.L., Oulavallickal, T., Williamson, A., Arcus, V.L., Patrick, M.W.
PDB entry 8ucj: CryoEM structure of Komagataella pastoris Cytochrome c oxidase (11 subunits) in complex with human VMAT2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Komagataella pastoris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-26
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8uck: Komagataella pastoris Cytochrome c oxidase (9 subunits) in complex with human VMAT2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Komagataella pastoris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-09-26
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8ucl: Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Tetrabenazine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Komagataella pastoris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-09-26
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8ucm: Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Reserpine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Komagataella pastoris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-09-26
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8ucn: Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Histamine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Komagataella pastoris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2023-09-26
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8uco: CryoEM structure of Komagataella pastoris Cytochrome c oxidase (9 subunits) in complex with human VMAT2 and Amphetamine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Komagataella pastoris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-09-26
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8ucp: Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Serotonin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Komagataella pastoris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-09-26
Authors: Ye, J., Liu, B., Li, W.
PDB entry 8ucq: CryoEM structure of Sec7 autoinhibited conformation
Classification: PROTEIN TRANSPORT
Source organism: Thermothielavioides terrestris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-09-27
Authors: Brownfield, B.A., Fromme, J.C.
PDB entry 8ucr: PhiCb5 maturation protein with Caulobacter crescentus bNY30a pili
Classification: RECOMBINATION
Source organism: Caulobacter phage phiCb5; Caulobacter vibrioides
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.45 Å
Deposited: 2023-09-27
Authors: Wang, Y., Zhang, J.
PDB entry 8ucs: Cryo-EM structure of the flagellar MotAB stator bound to FliG
Classification: MEMBRANE PROTEIN
Source organism: Clostridium sporogenes
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-09-27
Authors: Deme, J.C., Johnson, S., Lea, S.M.
PDB entry 8uct: Crystal structure of TcPINK1 in complex with PRT
Classification: CELL CYCLE
Source organism: Tribolium castaneum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2023-09-27
Authors: Veyron, S., Rasool, S., Trempe, J.F.
PDB entry 8ucu: Partial DNA termination subcomplex of Xenopus laevis DNA polymerase alpha-primase
Classification: REPLICATION, TRANSFERASE/DNA/RNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-09-27
Authors: Mullins, E.A., Chazin, W.J., Eichman, B.F.
PDB entry 8ucv: Complete DNA termination subcomplex 1 of Xenopus laevis DNA polymerase alpha-primase
Classification: REPLICATION, TRANSFERASE/DNA/RNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2023-09-27
Authors: Mullins, E.A., Chazin, W.C., Eichman, B.F.
PDB entry 8ucw: Complete DNA termination subcomplex 2 of Xenopus laevis DNA polymerase alpha-primase
Classification: REPLICATION, TRANSFERASE/DNA/RNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2023-09-27
Authors: Mullins, E.A., Chazin, W.C., Eichman, B.F.