LiteFold/PDB huggingface dataset:
PDB entry 8ebf: C-terminal (TPR) domain of LIC11990 from Leptospira interrogans
Classification: UNKNOWN FUNCTION
Source organism: Leptospira interrogans serovar Copenhageni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-31
Authors: Larrieux, N., Buschiazzo, A.
PDB entry 8ebg: Crystal structure of the probable FhuD FeIII-dicitrate-binding domain protein FecB from Mycobacterium tuberculosis
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2022-08-31
Authors: Cuff, M., Kim, Y., Endres, M., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 8ebh: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAATGGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2022-08-31
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8ebi: XFEL structure of beta lactamase microcrystals mixed with sulbactam solution for 15ms
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-08-31
Authors: Malla, T.N., Schmidt, M.
PDB entry 8ebk: Crystal Structure Analysis of xHDMX in complex with the stapled peptide PROTAC analog
Classification: APOPTOSIS
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2022-08-31
Authors: Seo, H.-S., Dhe-Paganon, S.
PDB entry 8ebl: Structure of KLHDC2 substrate binding domain bound to C-degron from EPHB2
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2022-08-31
Authors: Scott, D.C., Schulman, B.A.
PDB entry 8ebm: Structure of KLHDC2 substrate binding domain bound to KLHDC2's C-degron mimic
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-08-31
Authors: Scott, D.C., Schulman, B.A.
PDB entry 8ebn: Structure of KLHDC2-EloB/C tetrameric assembly
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-08-31
Authors: Scott, D.C., Schulman, B.A.
PDB entry 8ebo: Homopurine parallel G-quadruplex from human chromosome 7 stabilized by K+ ions
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-08-31
Authors: Chen, E.V., Yatsunyk, L.A.
PDB entry 8ebp: HMPV F dimer bound to RSV-199 Fab
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens; Human metapneumovirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2022-08-31
Authors: Wen, X., Jardetzky, T.S.
PDB entry 8ebr: XFEL structure of Mycobacterium tuberculosis beta lactamase microcrystals mixed with sulbactam for 30ms
Classification: HYDROLASE/Inhibitor
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-08-31
Authors: Malla, T.N., Schmidt, M.
PDB entry 8ebs: Initial DNA-lesion (Cy5) binding by XPC and TFIIH
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-08-31
Authors: Kim, J., Yang, W.
PDB entry 8ebt: XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (Cy5)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-08-31
Authors: Kim, J., Yang, W.
PDB entry 8ebu: XPC release from Core7-XPA-DNA (Cy5)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-08-31
Authors: Kim, J., Yang, W.
PDB entry 8ebv: Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2022-08-31
Authors: Kim, J., Yang, W.
PDB entry 8ebw: Initial DNA-lesion (AP) binding by XPC and TFIIH complex2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2022-08-31
Authors: Kim, J., Yang, W.
PDB entry 8ebx: XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (AP)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-31
Authors: Kim, J., Yang, W.
PDB entry 8eby: XPC release from Core7-XPA-DNA (AP)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-31
Authors: Kim, J., Yang, W.
PDB entry 8ebz: Crystal Structure of GMPPNP-bound KRAS-G13D mutant at 1.2 Ang resolution
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-08-31
Authors: Chan, A.H., Simanshu, D.K.
PDB entry 8ec0: III2IV respiratory supercomplex from Saccharomyces cerevisiae cardiolipin-lacking mutant
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-08-31
Authors: Hryc, C.F., Mileykovskaya, E., Baker, M., Dowhan, W.
PDB entry 8ec1: 5'-CGCGAATTCGCG-3' and benzimidazole diamidine (DB1476) comlpex with ligand orientation I
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-08-31
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8ec2: Mycobacterium phage Adephagia
Classification: VIRUS
Source organism: Mycobacterium phage Adephagia
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-09-01
Authors: Podgorski, J.M., White, S.J.
PDB entry 8ec3: The crystal structure of the complement inhibitory domain of Borrelia hermsii FbpC.
Classification: IMMUNE SYSTEM
Source organism: Borrelia hermsii HS1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-01
Authors: Booth, C.E., Garcia, B.L.
PDB entry 8ec4: XFEL structure of Mycobacterium tuberculosis beta lactamase microcrystals mixed with sulbactam for 240ms
Classification: HYDROLASE/Inhibitor
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-09-01
Authors: Malla, T.N., Schmidt, M.
PDB entry 8ec5: Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2022-09-01
Authors: Li, L., Bouvier, M.
PDB entry 8ec6: Cryo-EM structure of the Glutaminase C core filament (fGAC)
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-01
Authors: Ambrosio, A.L., Dias, S.M., Quesnay, J.E., Portugal, R.V., Cassago, A., van Heel, M.G., Islam, Z., Rodrigues, C.T.
PDB entry 8ec7: HnRNPA2 D290V LCD PM3
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-09-01
Authors: Eisenberg, D.S., Lu, J., Ge, P., Boyer, D.R.
PDB entry 8ec8: Mycobacterium phage Bobi
Classification: VIRUS
Source organism: Mycobacterium phage Bobi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-09-01
Authors: Podgorski, J.M., White, S.J.
PDB entry 8ec9: Covalently stabilized triangular trimer derived from Abeta16-36 with p-iodo-phenylalanine
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.169 Å
Deposited: 2022-09-01
Authors: Kreutzer, A.G., Yoo, S., Nowick, J.S.
PDB entry 8eca: Covalently stabilized triangular trimer derived from Abeta16-36
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2022-09-01
Authors: Kreutzer, A.G., Yoo, S., Nowick, J.S.
PDB entry 8ecc: Structure of Ternary Complex of cGAS with dsDNA and Bound 5-pppI(2,5)pA
Classification: TRANSFERASE/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2022-09-01
Authors: Wu, S., Sohn, J.
PDB entry 8ecd: E. coli L-asparaginase II mutant (V27T) in complex with L-Asp
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2022-09-01
Authors: Strzelczyk, P., Wlodawer, A., Lubkowski, J.
PDB entry 8ece: E. coli L-asparaginase II mutant (V27T) in complex with L-Glu
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2022-09-01
Authors: Strzelczyk, P., Wlodawer, A., Lubkowski, J.
PDB entry 8ecf: Cryo structure of Mycobacterium tuberculosis beta lactamase microcrystals mixed with sulbactam for 3 hours
Classification: HYDROLASE/Inhibitor
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.736 Å
Deposited: 2022-09-01
Authors: Malla, T.N., Schmidt, M.
PDB entry 8ecg: Complex of HMG1 with pitavastatin
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2022-09-01
Authors: Haywood, J., Bond, C.S.
PDB entry 8ech: Tick-borne encephalitis virus capsid protein NLS bound to host importin alpha 2
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Tick-borne encephalitis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-09-02
Authors: Roby, J.A., Forwood, J.K.
PDB entry 8eci: Arthrobacter phage Bridgette
Classification: VIRUS
Source organism: Arthrobacter phage Bridgette
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-09-02
Authors: Podgorski, J.M., White, S.J.
PDB entry 8ecj: Mycobacterium phage Cain
Classification: VIRUS
Source organism: Mycobacterium phage Cain
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-09-02
Authors: Podgorski, J.M., White, S.J.
PDB entry 8eck: Gordonia phage Cozz
Classification: VIRUS
Source organism: Gordonia phage Cozz
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-09-02
Authors: Podgorski, J.M., White, S.J.
PDB entry 8ecm: Crystal Structure Analysis of Acetyl-CoA acetyltransferase from Firmicutes bacterium
Classification: TRANSFERASE
Source organism: Firmicutes bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-09-02
Authors: Seo, H.S., Dhe-Paganon, S.
PDB entry 8ecn: Mycobacterium phage Ogopogo
Classification: VIRUS
Source organism: Mycobacterium phage Ogopogo
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-09-02
Authors: Podgorski, J.M., White, S.J.
PDB entry 8eco: Microbacterium phage Oxtober96
Classification: VIRUS
Source organism: Microbacterium phage Oxtober96
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-09-02
Authors: Podgorski, J.M., White, S.J.
PDB entry 8ecp: R16A PA0709 with BME modifications
Classification: CYTOSOLIC PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-02
Authors: Cuthbert, B.J., Goulding, C.W., Ulijasz, A.
PDB entry 8ecq: Bovine Fab 2G3
Classification: IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-02
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8ecr: KRAS4B 1-185 (C185S) bound to GDP-Mg2+
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2022-09-02
Authors: Betts, L., Rossman, K.L.
PDB entry 8ecs: F93G Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-09-02
Authors: Zheng, C., Mathews, I.I., Boxer, S.G.
PDB entry 8ect: F93AL57A Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-09-02
Authors: Zheng, C., Mathews, I.I., Boxer, S.G.
PDB entry 8ecu: F93S Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-09-02
Authors: Zheng, C., Mathews, I.I., Boxer, S.G.
PDB entry 8ecv: Bovine Fab 2F12
Classification: IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-09-02
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8ecw: Co-crystal structure of Chaetomium glucosidase with compound 11
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-09-02
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8ecx: PA0709 with glyoxal and BME modifications
Classification: CYTOSOLIC PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2022-09-02
Authors: Cuthbert, B.J., Goulding, C.W.
PDB entry 8ecy: cryoEM structure of bovine bestrophin-2 and glutamine synthetase complex
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2022-09-02
Authors: Owji, A.P., Kittredge, A.K., Yang, T.
PDB entry 8ecz: Bovine Fab 4C1
Classification: IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2022-09-02
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8ed0: Cryo-EM Structure of the P74-26 Tail Tube
Classification: VIRAL PROTEIN
Source organism: Oshimavirus P7426
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2022-09-02
Authors: Agnello, E., Pajak, J., Liu, X., Kelch, B.
PDB entry 8ed1: Bovine Fab 5C1
Classification: IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2022-09-02
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8ed3: Structure of a nanoparticle with icosahedral symmetry
Classification: DE NOVO PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-09-02
Authors: McCarthy, S., Gonen, S.
PDB entry 8ed4: Structure of the complex between the arsenite oxidase and its native electron acceptor cytochrome c552 from Pseudorhizobium sp. str. NT-26
Classification: ELECTRON TRANSPORT
Source organism: Pseudorhizobium banfieldiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-09-03
Authors: Maher, M.J., Poddar, N.
PDB entry 8ed5: Crystal structure of loop deletion AioX mutant from Pseudorhizobium sp. str. NT-26
Classification: SIGNALING PROTEIN
Source organism: Pseudorhizobium banfieldiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-09-03
Authors: Maher, M.J., Poddar, N.
PDB entry 8ed6: 5'-CGCGAATTCGCG-3' and benzimidazole diamidine (DB1476) complex with ligand orientation II
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-09-03
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8ed7: cryo-EM structure of TRPM3 ion channel in apo state
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-09-03
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ed8: cryo-EM structure of TRPM3 ion channel in the presence of PIP2 and PregS, state 1
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-03
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ed9: cryo-EM structure of TRPM3 ion channel in the presence with PIP2 and PregS, state 2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-03
Authors: Zhao, C., MacKinnon, R.
PDB entry 8eda: An alternating AT dodecamer benzimidazole (DB1476) complex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-09-03
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8edb: 5'-CGCGAATTCGCG-3' and an AT-specific binder (DB1884) complex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-09-03
Authors: Ogbonna, E.N., Wilson, W.D.
PDB entry 8edc: Structure of C. elegans UNC-5 IG 1+2 Domains
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-09-04
Authors: Priest, J.M., Ozkan, E.
PDB entry 8edd: Staphylococcus aureus endonuclease IV Y33F mutant
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-04
Authors: Saper, M.A., Kirillov, S., Isupov, M.N., Wiener, R., Rouvinski, A.
PDB entry 8ede: Crystal structure of covalent inhibitor 2-chloro-N'-(N-(4-chlorophenyl)-N-methylglycyl)acetohydrazide bound to Ubiquitin C-terminal Hydrolase-L1
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.799 Å
Deposited: 2022-09-04
Authors: Patel, R., Imhoff, R., Flaherty, D., Das, C.
PDB entry 8edf: Bovine Fab SKD in complex with Sars COV-2 receptor binding domain
Classification: IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-09-04
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 8edg: Cryo-EM structure of the Hermes transposase bound to two left-ends of its DNA transposon
Classification: RECOMBINATION/DNA
Source organism: Musca domestica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.64 Å
Deposited: 2022-09-04
Authors: Lannes, L., Dyda, F.
PDB entry 8edh: Identification of a class of WNK isoform-specific inhibitors through high-throughput screening
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.111 Å
Deposited: 2022-09-04
Authors: Akella, R., Goldsmith, E.J.
PDB entry 8edi: Structure of C. elegans UNC-5 IG 1+2 Domains bound to Heparin dp4
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2022-09-04
Authors: Priest, J.M., Ozkan, E.
PDB entry 8edj: Crystal structure of rA3G-ssRNA-GA
Classification: HYDROLASE/RNA
Source organism: Macaca mulatta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2022-09-04
Authors: Pacheco, J., Yang, H.J., Li, S.-X., Chen, X.S.
PDB entry 8edk: Structure of C. elegans UNC-6 LamN and EGF domains
Classification: SIGNALING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-04
Authors: Priest, J.M., Ozkan, E.
PDB entry 8edl: Cryo-EM structure of the full-length human NF1 dimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-09-05
Authors: Darling, J.E., Merk, A., Grisshammer, R., Ognjenovic, J.
PDB entry 8edm: Cryo-EM structure of the full-length human NF1 dimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-05
Authors: Darling, J.E., Merk, A., Grisshammer, R., Ognjenovic, J.
PDB entry 8edn: Cryo-EM structure of the full-length human NF1 dimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-05
Authors: Darling, J.E., Merk, A., Grisshammer, R., Ognjenovic, J.
PDB entry 8edo: Cryo-EM structure of the full-length human NF1 dimer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-05
Authors: Darling, J.E., Merk, A., Grisshammer, R., Ognjenovic, J.
PDB entry 8edp: Crystal structure of a three-tetrad, parallel, and K+ stabilized homopurine G-quadruplex from human chromosome 7
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2022-09-05
Authors: Ye, M., Yatsunyk, L.A.
PDB entry 8edq: E. coli pyruvate kinase (PykF) I264F
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2022-09-05
Authors: Donovan, K.A., Coombes, D., Dobson, R.C.J., Cooper, T.F.
PDB entry 8edr: E. coli pyruvate kinase (PykF) P70Q
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2022-09-05
Authors: Donovan, K.A., Coombes, D., Dobson, R.C.J., Cooper, T.F.
PDB entry 8eds: Escherichia coli pyruvate kinase (PykF) P70Q
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-09-05
Authors: Donovan, K.A., Coombes, D., Dobson, R.C.J., Cooper, T.F.
PDB entry 8edt: E. coli Pyruvate kinase (PykF) T462I
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-09-05
Authors: Donovan, K.A., Coombes, D., Dobson, R.C.J., Cooper, T.F.
PDB entry 8edu: Mycobacteriophage Muddy capsid
Classification: VIRUS
Source organism: Mycobacterium phage Muddy
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-09-06
Authors: Freeman, K.G., White, S.J., Huet, A., Conway, J.F.
PDB entry 8edv: Mitoguardin homolog (MIGA) delta TM residues 106-496 from Caenorhabditis elegans bound to modelled lipid phosphatidylethanolamine
Classification: LIPID TRANSPORT
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-09-06
Authors: Hong, Z., Adlakha, J., Reinisch, K.M.
PDB entry 8edw: Cryo-EM Structure of human ABCA7 in BPL/Ch Nanodiscs
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-06
Authors: Alam, A., Le, L.T.M., Thompson, J.R.
PDB entry 8edx: Cryo-EM Structure of P74-26 tail-like tubes
Classification: VIRAL PROTEIN
Source organism: Oshimavirus P7426
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2022-09-06
Authors: Agnello, E., Pajak, J., Liu, X., Kelch, B.
PDB entry 8edy: KRAS4b A146T 1-185 bound to GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2022-09-06
Authors: Betts, L., Rossman, K.L.
PDB entry 8edz: The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ000986319
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Luxembourg/43/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-09-06
Authors: Cuypers, M.G., Slavish, J.P., Jayaraman, S., Rankovic, Z., White, S.W.
PDB entry 8ee0: KS-AT didomain from module 2 of the 6-deoxyerythronolide B synthase in complex with antibody fragment 1B2
Classification: BIOSYNTHETIC PROTEIN, TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Saccharopolyspora erythraea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-09-06
Authors: Cogan, D.P., Brodsky, K.L., Guzman, K.M., Mathews, I.I., Khosla, C.
PDB entry 8ee1: KS-AT didomain from module 2 of the 6-deoxyerythronolide B synthase in complex with antibody fragment AA5
Classification: BIOSYNTHETIC PROTEIN, TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Saccharopolyspora erythraea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-06
Authors: Cogan, D.P., Brodsky, K.L., Guzman, K.M., Mathews, I.I., Khosla, C.
PDB entry 8ee2: Crystal Structure of Nanobody VHH219 Bound to Its Antigen PA14 Cif
Classification: IMMUNE SYSTEM
Source organism: Pseudomonas aeruginosa PA14; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-09-06
Authors: Simard, A.R., Madden, D.R.
PDB entry 8ee3: F93Y Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Classification: OXIDOREDUCTASE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-09-06
Authors: Zheng, C., Boxer, S.G.
PDB entry 8ee4: Structure of PtuA
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-09-06
Authors: Shen, Z.F., Fu, T.M.
PDB entry 8ee5: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ119-D in complex with ZIKV E glycoprotein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta; Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Experimental method: X-RAY DIFFRACTION
Resolution: 3.583 Å
Deposited: 2022-09-06
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8ee6: Cryo-EM Structure of human ABCA7 in PE/Ch nanodiscs
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-09-06
Authors: Alam, A., Le, L.T.M., Thompson, J.R.
PDB entry 8ee7: Structure of focused PtuA(dimer) and PtuB(monomer) complex
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2022-09-06
Authors: Shen, Z.F., Fu, T.M.
PDB entry 8ee8: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ100-C in complex with ZIKV E glycoprotein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta; Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2022-09-06
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8ee9: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAATGGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2022-09-06
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8eea: Structure of E.coli Septu (PtuAB) complex
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-09-06
Authors: Shen, Z.F., Fu, T.M.
PDB entry 8eeb: Cryo-EM structure of human ABCA7 in Digitonin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-09-06
Authors: Alam, A., Le, L.T.M., Thompson, J.R.
PDB entry 8eec: Crystal structure of HPK1 citron-homology domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-06
Authors: Wu, P., Lehoux, I., Wang, W.
PDB entry 8eed: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ107-B in complex with ZIKV E glycoprotein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta; Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Experimental method: X-RAY DIFFRACTION
Resolution: 3.487 Å
Deposited: 2022-09-07
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8eee: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ104-d in complex with ZIKV E glycoprotein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta; Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Experimental method: X-RAY DIFFRACTION
Resolution: 2.819 Å
Deposited: 2022-09-07
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8eef: C. ammoniagenes monoamine oxidase (MAO) bound to octopamine
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eeg: C. ammoniagenes monoamine oxidase (MAO) bound to dopamine
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eeh: C. ammoniagenes monoamine oxidase (MAO) bound to tryptamine
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eei: Unbound C. ammoniagenes monoamine oxidase (MAO)
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eej: C. ammoniagenes monoamine oxidase (MAO) C424S variant bound to dopamine
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eek: C. ammoniagenes monoamine oxidase (MAO) bound to tyramine
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eel: C. ammoniagenes monoamine oxidase (MAO) bound to 5-aminopentanol
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eem: C. ammoniagenes monoamine oxidase (MAO) bound to norepinephrine
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8een: C. ammoniagenes monoamine oxidase (MAO) C424S variant
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eeo: C. ammoniagenes monoamine oxidase bound to cadaverine
Classification: FLAVOPROTEIN
Source organism: Corynebacterium ammoniagenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-09-07
Authors: Muellers, S.N., Allen, K.N.
PDB entry 8eep: T=1 particle HIV-1 CA G60A/G61P
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-09-07
Authors: Pornillos, O., Ganser-Pornillos, B.K., Schirra, R.T.
PDB entry 8eeq: CryoEM structures of bAE1 captured in multiple states.
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2022-09-07
Authors: Zhekova, H.R., Wang, W.G., Jiang, J.S., Tsirulnikov, K., Muhammad-Khan, G.H., Azimov, R., Abuladze, N., Kao, L., Newman, D., Noskov, S.Y., Tieleman, P., Zhou, Z.H., Pushkin, A., Kurtz, I.
PDB entry 8eer: KRAS4B A146V 1-185 bound to GDP
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2022-09-07
Authors: Betts, L., Rossman, K.L.
PDB entry 8ees: Crystal structure of 3-deoxy-manno-octulosonate cytidylyltransferase from Klebsiella pneumoniae
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae subsp. pneumoniae HS11286
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-09-07
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8eet: T=1 particle HIV-1 CA M66A
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-07
Authors: Pornillos, O., Ganser-Pornillos, B.K., Schirra, R.T.
PDB entry 8eeu: Venezuelan equine encephalitis virus-like particle in complex with Fab SKT05
Classification: VIRUS LIKE PARTICLE/IMMUNE SYSTEM
Source organism: Macaca fascicularis; Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-09-07
Authors: Tsybovsky, Y., Pletnev, S., Verardi, R., Roederer, M., Kwong, P.D.
PDB entry 8eev: Venezuelan equine encephalitis virus-like particle in complex with Fab SKT-20
Classification: VIRUS LIKE PARTICLE/IMMUNE SYSTEM
Source organism: Macaca fascicularis; Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-07
Authors: Tsybovsky, Y., Pletnev, S., Verardi, R., Roederer, M., Kwong, P.D.
PDB entry 8eew: CryoEM of the soluble OPA1 dimer from the GDP-AlFx bound helical assembly on a lipid membrane
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.48 Å
Deposited: 2022-09-07
Authors: Nyenhuis, S.B., Wu, X., Stanton, A.E., Strub, M.P., Yim, Y.I., Canagarajah, B., Hinshaw, J.E.
PDB entry 8eex: Cas7-11 in complex with Csx29
Classification: RNA BINDING PROTEIN/RNA
Source organism: Desulfonema ishimotonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-09-07
Authors: Demircioglu, F.E., Wilkinson, M.E., Strecker, J., Li, D., Faure, G., Macrae, R.K., Zhang, F.
PDB entry 8eey: Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30
Classification: RNA BINDING PROTEIN/RNA
Source organism: Desulfonema ishimotonii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2022-09-07
Authors: Demircioglu, F.E., Wilkinson, M.E., Strecker, J., Li, D., Faure, G., Macrae, R.K., Zhang, F.
PDB entry 8eez: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ100-C
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-09-07
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8ef0: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ104-D
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2022-09-07
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8ef1: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ103-A
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2022-09-07
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8ef2: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ107-B
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.102 Å
Deposited: 2022-09-07
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8ef3: Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ119-D
Classification: VIRAL PROTEIN
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.672 Å
Deposited: 2022-09-07
Authors: Sankhala, R.S., Joyce, M.G.
PDB entry 8ef4: Solution structural bundle of bivalirudin - a bivalent hirudin based thrombin inhibitor
Classification: BLOOD CLOTTING
Experimental method: SOLUTION NMR
Deposited: 2022-09-08
Authors: Mishra, S.H., Bhavaraju, S.
PDB entry 8ef5: Fentanyl-bound mu-opioid receptor-Gi complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-08
Authors: Zhuang, Y., Wang, Y., Guo, S., Zhou, X.E., Rao, Q., He, X., He, B., Liu, J., Zhou, Q., Wang, X., Liu, W., Jiang, X., Yang, D., Chen, X., Jiang, Y., Jiang, H., Shen, J., Melcher, K., Wang, M., Xie, X., Xu, H.E.
PDB entry 8ef6: Morphine-bound mu-opioid receptor-Gi complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-08
Authors: Zhuang, Y., Wang, Y., Guo, S., Zhou, X.E., Rao, Q., He, X., He, B., Liu, J., Zhou, Q., Wang, X., Liu, W., Jiang, X., Yang, D., Chen, X., Jiang, Y., Jiang, H., Shen, J., Melcher, K., Wang, M., Xie, X., Xu, H.E.
PDB entry 8ef7: CryoEM of the soluble OPA1 dimer from the apo helical assembly on a lipid membrane
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.68 Å
Deposited: 2022-09-08
Authors: Nyenhuis, S.B., Wu, X., Stanton, A.E., Strub, M.P., Yim, Y.I., Canagarajah, B., Hinshaw, J.E.
PDB entry 8ef8: Staphylococcus aureus ClpP Y63W in complex with compound 3471
Classification: CYTOSOLIC PROTEIN
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-09-08
Authors: Lee, R.E., Griffith, E.C.
PDB entry 8ef9: Structure of Lates calcarifer DNA polymerase theta polymerase domain with long duplex DNA, complex Ia
Classification: DNA BINDING PROTEIN/DNA
Source organism: Lates calcarifer; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-09-08
Authors: Li, C., Zhu, H., Sun, J., Gao, Y.
PDB entry 8efb: Oliceridine-bound mu-opioid receptor-Gi complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-08
Authors: Zhuang, Y., Wang, Y., Guo, S., Zhou, X.E., Rao, Q., He, X., He, B., Liu, J., Zhou, Q., Wang, X., Liu, W., Jiang, X., Yang, D., Chen, X., Jiang, Y., Jiang, H., Shen, J., Melcher, K., Wang, M., Xie, X., Xu, H.E.
PDB entry 8efc: Structure of Lates calcarifer DNA polymerase theta polymerase domain with long duplex DNA, complex Ia
Classification: DNA BINDING PROTEIN
Source organism: Lates calcarifer; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-08
Authors: Li, C., Zhu, H., Sun, J., Gao, Y.
PDB entry 8efd: Human cardiac myosin II and associated essential light chain in the rigor conformation
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-08
Authors: Doran, M.H., Lehman, W., Rynkiewicz, M.J.
PDB entry 8efe: Human beta-cardiac myosin II bound to ADP-MG2+ and the associated essential light chain
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-08
Authors: Doran, M.H., Lehman, W., Rynkiewicz, M.J.
PDB entry 8eff: CryoEM of the soluble OPA1 tetramer from the GDP-AlFx bound helical assembly on a lipid membrane
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.48 Å
Deposited: 2022-09-08
Authors: Nyenhuis, S.B., Wu, X., Stanton, A.E., Strub, M.P., Yim, Y.I., Canagarajah, B., Hinshaw, J.E.
PDB entry 8efg: Crystal structure of human TATDN1 bound to dAMP and two zinc ions
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-08
Authors: Dorival, J., Eichman, B.F.
PDB entry 8efh: Helical reconstruction of the human cardiac actin-tropomyosin-myosin complex in complex with ADP-Mg2+
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-08
Authors: Doran, M.H., Lehman, W., Rynkiewicz, M.J.
PDB entry 8efi: Helical reconstruction of the human cardiac actin-tropomyosin-myosin complex in the rigor form
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-08
Authors: Doran, M.H., Lehman, W., Rynkiewicz, M.J.
PDB entry 8efj: A structural study of selectivity mechanisms for JNK3 and p38 alpha with indazole scaffold probing compounds
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2022-09-08
Authors: Park, H., Feng, Y.
PDB entry 8efk: Structure of Lates calcarifer DNA polymerase theta polymerase domain with hairpin DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Lates calcarifer; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-08
Authors: Li, C., Zhu, H., Sun, J., Gao, Y.
PDB entry 8efl: SR17018-bound mu-opioid receptor-Gi complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-08
Authors: Zhuang, Y., Wang, Y., Guo, S., Zhou, X.E., Rao, Q., He, X., He, B., Liu, J., Zhou, Q., Wang, X., Liu, W., Jiang, X., Yang, D., Chen, X., Jiang, Y., Jiang, H., Shen, J., Melcher, K., Wang, M., Xie, X., Xu, H.E.
PDB entry 8efm: Structure of coral STING receptor from Stylophora pistillata in complex with 2',3'-cGAMP
Classification: IMMUNE SYSTEM
Source organism: Stylophora pistillata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2022-09-08
Authors: Li, Y., Slavik, K.M., Morehouse, B.R., Mears, K., Kranzusch, P.J.
PDB entry 8efn: Structure of Sp-STING3 from Stylophora pistillata coral in complex with 3',3'-cGAMP
Classification: IMMUNE SYSTEM
Source organism: Stylophora pistillata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2022-09-08
Authors: Li, Y., Slavik, K.M., Morehouse, B.R., Mears, K., Kranzusch, P.J.
PDB entry 8efo: PZM21-bound mu-opioid receptor-Gi complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-08
Authors: Zhuang, Y., Wang, Y., Guo, S., Zhou, X.E., Rao, Q., He, X., He, B., Liu, J., Zhou, Q., Wang, X., Liu, W., Jiang, X., Yang, D., Chen, X., Jiang, Y., Jiang, H., Shen, J., Melcher, K., Wang, M., Xie, X., Xu, H.E.
PDB entry 8efp: CryoEM structure of GSDMB in complex with shigella IpaH7.8
Classification: TRANSFERASE/LIPID BINDING PROTEIN
Source organism: Homo sapiens; Shigella flexneri
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-09-08
Authors: Wang, C., Ruan, J.
PDB entry 8efq: DAMGO-bound mu-opioid receptor-Gi complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-08
Authors: Zhuang, Y., Wang, Y., Guo, S., Zhou, X.E., Rao, Q., He, X., He, B., Liu, J., Zhou, Q., Wang, X., Liu, W., Jiang, X., Yang, D., Chen, X., Jiang, Y., Jiang, H., Shen, J., Melcher, K., Wang, M., Xie, X., Xu, H.E.
PDB entry 8efr: CryoEM of the soluble OPA1 interfaces with GDP-AlFx bound from the helical assembly on a lipid membrane
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.48 Å
Deposited: 2022-09-09
Authors: Nyenhuis, S.B., Wu, X., Stanton, A.E., Strub, M.P., Yim, Y.I., Canagarajah, B., Hinshaw, J.E.
PDB entry 8efs: CryoEM of the soluble OPA1 tetramer from the apo helical assembly on a lipid membrane
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.68 Å
Deposited: 2022-09-09
Authors: Nyenhuis, S.B., Wu, X., Stanton, A.E., Strub, M.P., Yim, Y.I., Canagarajah, B., Hinshaw, J.E.
PDB entry 8eft: CryoEM of the soluble OPA1 interfaces from the apo helical assembly on a lipid membrane
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.68 Å
Deposited: 2022-09-09
Authors: Nyenhuis, S.B., Wu, X., Stanton, A.E., Strub, M.P., Yim, Y.I., Canagarajah, B., Hinshaw, J.E.
PDB entry 8efu: a22L prion fibril
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-09
Authors: Hoyt, F., Caughey, B.
PDB entry 8efv: Structure of single homo-hexameric Holliday junction ATP-dependent DNA helicase RuvB motor
Classification: STRUCTURAL PROTEIN
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2022-09-09
Authors: Shen, Z.F., Rish, A.D., Fu, T.M.
PDB entry 8efw: Structure of SdeA DUB Domain disulfide crosslinked with Ubiquitin
Classification: HYDROLASE/SIGNALING PROTEIN
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-09-09
Authors: Negron Teron, K.N., Das, C.
PDB entry 8efx: Structure of OtDUB DUB Domain disulfide crosslinked with Ubiquitin
Classification: HYDROLASE/SIGNALING PROTEIN
Source organism: Homo sapiens; Orientia tsutsugamushi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-09-09
Authors: Negron Teron, K.N., Das, C.
PDB entry 8efy: Structure of double homo-hexameric AAA+ ATPase RuvB motors
Classification: STRUCTURAL PROTEIN
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2022-09-10
Authors: Shen, Z.F., Rish, A.D., Fu, T.M.
PDB entry 8efz: Crystal structure of CcNikZ-II, apoprotein
Classification: TRANSPORT PROTEIN
Source organism: Clostridium carboxidivorans P7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-09-10
Authors: Stogios, P.J., Evdokimova, E., Diep, P., Yakunin, A., Mahadevan, K., Savchenko, A.
PDB entry 8eg0: CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA and SAH
Classification: TRANSFERASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2022-09-10
Authors: Ruiz-Arroyo, V.M., Nam, Y.
PDB entry 8eg3: Structure of human placental steroid (estrone/DHEA) sulfatase at 2.0 angstrom resolution
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-09-10
Authors: Ghosh, D.
PDB entry 8eg4: [iU:Ag+:iU] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.18 Å
Deposited: 2022-09-10
Authors: Vecchioni, S., Lu, B., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 8eg5: huCaspase-6 in complex with inhibitor 3a
Classification: APOPTOSIS,HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2022-09-11
Authors: Zhao, Y., Fan, P., Liu, J., Wang, Y., Van Horn, K., Wang, D., Medina-Cleghorn, D., Lee, P., Bryant, C., Altobelli, C., Jaishankar, P., Ng, R.A., Ambrose, A.J., Tang, Y., Arkin, M.R., Renslo, A.R.
PDB entry 8eg6: huCaspase-6 in complex with inhibitor 2a
Classification: APOPTOSIS,HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-09-11
Authors: Zhao, Y., Fan, P., Liu, J., Wang, Y., Van Horn, K., Wang, D., Medina-Cleghorn, D., Lee, P., Bryant, C., Altobelli, C., Jaishankar, P., Ng, R.A., Ambrose, A.J., Tang, Y., Arkin, M.R., Renslo, A.R.
PDB entry 8eg7: Cryo-EM structure of pre-consensus elemental paused elongation complex
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-11
Authors: Kang, J.Y., Chen, J., Llewellyn, E., Landick, R., Darst, S.A.
PDB entry 8eg8: Cryo-EM structure of consensus elemental paused elongation complex with a folded TL
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-12
Authors: Kang, J.Y., Chen, J., Llewellyn, E., Landick, R., Darst, S.A.