LiteFold/PDB huggingface dataset:
PDB entry 9cyr: Crystal structure of D245G mutant human PTP1B (PTPN1) at room temperature (298 K)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-08-02
Authors: Ebrahim, A., Perdikari, A., Woods, V.A., Lawler, K., Bounds, R., Shah, D.S., Singh, N.I., Mehlman, T., Riley, B.T., Sharma, S., Morris, J.W., Keogh, J.M., Henning, E., Smith, M., Farooqi, I.S., Keedy, D.A.
PDB entry 9cys: Toxin/immunity complex for a T6SS lipase effector from E. cloacae
Classification: TOXIN
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-08-02
Authors: Cuthbert, B.J., Jensen, S.J., Goulding, C.W., Hayes, C.S.
PDB entry 9cyt: Cryo-EM structure of MRV outer shell
Classification: VIRAL PROTEIN
Source organism: Mammalian orthoreovirus 3 Dearing
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-08-02
Authors: Liu, X.Y., Xia, X., Martynowycz, M.W., Gonen, T., Zhou, Z.H.
PDB entry 9cyx: Cryo-EM structure of MRV full core
Classification: VIRAL PROTEIN
Source organism: Mammalian orthoreovirus 3 Dearing
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-02
Authors: Liu, X.Y., Xia, X., Martynowycz, M.W., Gonen, T., Zhou, Z.H.
PDB entry 9cyy: Cryo-EM structure of MRV virion
Classification: VIRAL PROTEIN
Source organism: Mammalian orthoreovirus 3 Dearing
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-03
Authors: Liu, X.Y., Xia, X., Martynowycz, M.W., Gonen, T., Zhou, Z.H.
PDB entry 9cyz: Crystal structure of human farnesyl pyrophosphate synthase in complex with a cryptic pocket ligand, CL02134
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.302 Å
Deposited: 2024-08-03
Authors: Pandya, V.R., Park, J.
PDB entry 9cz0: Structure of thioferritin from Pyrococcus furiosis
Classification: METAL BINDING PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.86 Å
Deposited: 2024-08-03
Authors: Gauvin, C.C., Waghwani, H.K., Tokmina-Lukaszewska, M., Bothner, B., Douglas, T., Lawrence, C.M.
PDB entry 9cz1: Cryo-EM structure of a 'hat' portion of FtsH.HflK.HflC complex
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-08-03
Authors: Ghanbarpour, A., Sauer, R.T., Davis, J.H.
PDB entry 9cz2: Cryo-EM structure of a nautilus-like HflK/C assembly in complex with FtsH AAA protease
Classification: CHAPERONE
Source organism: Escherichia coli BL21
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-08-03
Authors: Ghanbarpour, A., Sauer, R.T., Davis, J.H.
PDB entry 9cz3: Self assembled nanotube of L5
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-08-03
Authors: Das, A.
PDB entry 9cz4: Crystal Structure (I) of human farnesyl pyrophosphate synthase in complex with a cryptic pocket ligand, CL03049
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-08-03
Authors: Pandya, V.R., Park, J.
PDB entry 9cz5: Crystal structure (II) of human farnesyl pyrophosphate synthase in complex with a cryptic pocket ligand, CL03049
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.652 Å
Deposited: 2024-08-03
Authors: Pandya, V.R., Park, J.
PDB entry 9cz7: Crystal structure of integrin avb6 headpiece in complex with compound 12
Classification: CELL ADHESION/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2024-08-04
Authors: Monroy, M.F., Qiao, Q., Lin, F.Y.
PDB entry 9cz8: Structure of thioferritin exhibiting iron mineral nucleation, from Pyrococcus furiosis
Classification: METAL BINDING PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.91 Å
Deposited: 2024-08-04
Authors: Gauvin, C.C., Waghwani, H.K., Tokmina-Lukaszewska, M., Bothner, B., Douglas, T., Lawrence, C.M.
PDB entry 9cz9: Structure of thioferritin with averaged iron mineral core, from Pyrococcus furiosis
Classification: METAL BINDING PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2024-08-04
Authors: Gauvin, C.C., Waghwani, H.K., Tokmina-Lukaszewska, M., Bothner, B., Douglas, T., Lawrence, C.M.
PDB entry 9cza: Crystal structure of integrin avb6 headpiece in complex with compound 18
Classification: CELL ADHESION/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2024-08-05
Authors: Monroy, M.F., Qiao, Q., Lin, F.Y.
PDB entry 9czd: Crystal structure of integrin avb6 headpiece in complex with compound 30
Classification: CELL ADHESION/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2024-08-05
Authors: Monroy, M.F., Qiao, Q., Lin, F.Y.
PDB entry 9cze: High-Resolution Structure of Human DHODH for Molecular Replacement in Fragment Screening Campaign
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-08-05
Authors: Purificacao, A.D., Benz, L.S., Froes, T.Q., Weiss, M.S., Nonato, M.C.
PDB entry 9czf: Crystal structure of integrin avb6 headpiece in complex with compound MORF-627
Classification: CELL ADHESION/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2024-08-05
Authors: Monroy, M.F., Qiao, Q., Lin, F.Y.
PDB entry 9czh: Ca2+ bound intermediate state of hSlo1 + beta2N-beta4 channel in detergent.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-05
Authors: Agarwal, S., Nimigean, C.
PDB entry 9czi: Paired helical tau filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-05
Authors: Hoq, M.R., Vago, F.S., Ozcan, K.A., Bharath, S.R.
PDB entry 9czj: Ca2+ free hSlo1 + beta2N-beta4 channel in detergent.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2024-08-05
Authors: Agarwal, S., Nimigean, C.
PDB entry 9czk: Ca2+ free hSlo1 + beta2N-beta4 channel in nanodisc.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-08-05
Authors: Agarwal, S., Nimigean, C.
PDB entry 9czl: Straight tau filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-05
Authors: Hoq, M.R., Vago, F.S., Ozcan, K.A., Bharath, S.R.
PDB entry 9czm: Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in nanodisc.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-08-05
Authors: Agarwal, S., Nimigean, C.
PDB entry 9czn: Type Ic amyloid-beta 42 filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-08-05
Authors: Hoq, M.R., Vago, F.S., Ozcan, K.A., Bharath, S.R.
PDB entry 9czo: Ca2+ bound intermediate state of hSlo1 + beta2N-beta4 channel in nanodisc.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-08-05
Authors: Agarwal, S., Nimigean, C.
PDB entry 9czp: Type Id amyloid-beta 42 filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Classification: NEUROPEPTIDE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-05
Authors: Hoq, M.R., Vago, F.S., Ozcan, K.A., Bharath, S.R.
PDB entry 9czq: Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-08-05
Authors: Agarwal, S., Nimigean, C.
PDB entry 9czs: Structure of the self-association domain of LDB2
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2024-08-05
Authors: Vu, T.H., Patel, K., Smith, N.C., Matthews, J.M.
PDB entry 9czt: HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 6
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2024-08-05
Authors: Johnson, E., Mc Tigue, M.
PDB entry 9czu: HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-08-05
Authors: Johnson, E., Mc Tigue, M.
PDB entry 9czw: HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 13
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-08-05
Authors: Johnson, E., Mc Tigue, M.
PDB entry 9czx: HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 21
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.464 Å
Deposited: 2024-08-05
Authors: Johnson, E., Mc Tigue, M.
PDB entry 9d00: HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with compound 53
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.951 Å
Deposited: 2024-08-05
Authors: Johnson, E., McTigue, M., Cronin, C.N.
PDB entry 9d01: Crystal Structure of a-iTHR-201
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-08-06
Authors: Bera, A.K., Harley, P., Baker, D.
PDB entry 9d02: Co-crystal structure of circularly permuted human taspase-1 bound to ligand SMDC1014883 (2R)-4-(ethenesulfonyl)-1-{[3-fluoro-4-(trifluoromethoxy)phenyl]methyl}-2-[(prop-2-yn-1-yloxy)methyl]piperazine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-08-06
Authors: Delker, S.L., Edwards, T.E., Abendroth, J.
PDB entry 9d03: Co-crystal structure of circularly permuted human taspase-1 bound to ligand SMDC1014689 1-(ethenesulfonyl)-4-{[3-fluoro-4-(trifluoromethoxy)phenyl]methyl}piperazine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-08-06
Authors: Delker, S.L., Edwards, T.E., Abendroth, J.
PDB entry 9d04: CO-CRYSTAL STRUCTURE OF CIRCULARLY PERMUTED HUMAN TASPASE-1 BOUND TO LIGAND SMDC994967 1-(ETHENESULFONYL)-4-{[4- (TRIFLUOROMETHOXY)PHENYL]METHYL}PIPERAZINE
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-08-06
Authors: Delker, S.L., Edwards, T.E., Abendroth, J.
PDB entry 9d06: Crystal structure of IgG1 FC M252R at pH 5.6
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-08-06
Authors: Reddem, E.R., Shapiro, L.
PDB entry 9d08: Crystal structure of the SARS-CoV-2 main protease in complex with covalent dipeptidyl inhibitor CIP-1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-08-06
Authors: Engel, J.A., Al-Homoudi, A.I., Muczynski, M.D., Brunzelle, J.S., Kovari, L.C.
PDB entry 9d09: Crystal structure of IgG1 FC M252H at pH 5.6
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2024-08-06
Authors: Reddem, E.R., Shapiro, L.
PDB entry 9d0a: CryoEM structure of PAR2 with endogenous tethered ligand.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-06
Authors: Lyu, Z., Lyu, X., McGrath, A.P., Kang, Y.
PDB entry 9d0g: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-07
Authors: Aleksandrova, E.V., Wu, K.J.Y., Robinson, P.J., Benedetto, A.E., Yu, M., Tresco, B.I.C., See, D.N.Y., Jiang, T., Ramkissoon, A., Dunand, C.F., Svetlov, M.S., Lee, J., Myers, A.G., Polikanov, Y.S.
PDB entry 9d0h: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-07
Authors: Aleksandrova, E.V., Wu, K.J.Y., Robinson, P.J., Benedetto, A.E., Yu, M., Tresco, B.I.C., See, D.N.Y., Jiang, T., Ramkissoon, A., Dunand, C.F., Svetlov, M.S., Lee, J., Myers, A.G., Polikanov, Y.S.
PDB entry 9d0i: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-08-07
Authors: Aleksandrova, E.V., Wu, K.J.Y., Robinson, P.J., Benedetto, A.E., Yu, M., Tresco, B.I.C., See, D.N.Y., Jiang, T., Ramkissoon, A., Dunand, C.F., Svetlov, M.S., Lee, J., Myers, A.G., Polikanov, Y.S.
PDB entry 9d0j: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-08-07
Authors: Aleksandrova, E.V., Tresco, B.I.C., Wu, K.J.Y., Ramkissoon, A., Purdy, M., See, D.N.Y., Liu, R.Y., Myers, A.G., Polikanov, Y.S.
PDB entry 9d0p: Crystal structure of PLK1 in complex with AZD1775
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-08-07
Authors: Bell, J.A.
PDB entry 9d0q: Crystal structure of human Wee1 kinase domain in complex with inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-08-07
Authors: Bell, J.A.
PDB entry 9d0r: Crystal structure of human Wee1 kinase domain in complex with inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-08-07
Authors: Bell, J.A.
PDB entry 9d0s: Crystal structure of human Wee1 kinase domain in complex with inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-08-07
Authors: Bell, J.A.
PDB entry 9d0t: Proteasome core particle assembly intermediate Blm10:13S purified from Saccharomyces cerevisiae
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-08-07
Authors: Chen, X., Kaur, M., Roelofs, J., Walters, K.J.
PDB entry 9d0u: Crystal structure of CDK2 in complex with Cpd 2
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-07
Authors: Kwiatkowski, N., Liang, T., Sha, Z., Collier, P.N., Yang, A., Sathappa, M., Paul, A., Su, L., Zheng, X., Aversa, R., Li, K., Mehovic, R., Breitkopf, S.B., Chen, D., Howarth, C.L., Yuan, K., Jo, H., Growney, J.D., Weiss, M., Williams, J.
PDB entry 9d0v: Crystal structure of CDK2/CyclinE1 in complex with Cpd 2
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2024-08-07
Authors: Kwiatkowski, N., Liang, T., Sha, Z., Collier, P.N., Yang, A., Sathappa, M., Paul, A., Su, L., Zheng, X., Aversa, R., Li, K., Mehovic, R., Breitkopf, S.B., Chen, D., Howarth, C.L., Yuan, K., Jo, H., Growney, J.D., Weiss, M., Williams, J.
PDB entry 9d0w: Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-08-07
Authors: Kwiatkowski, N., Liang, T., Sha, Z., Collier, P.N., Yang, A., Sathappa, M., Paul, A., Su, L., Zheng, X., Aversa, R., Li, K., Mehovic, R., Breitkopf, S.B., Chen, D., Howarth, C.L., Yuan, K., Jo, H., Growney, J.D., Weiss, M., Williams, J.
PDB entry 9d0x: Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-08-07
Authors: Kwiatkowski, N., Liang, T., Sha, Z., Collier, P.N., Yang, A., Sathappa, M., Paul, A., Su, L., Zheng, X., Aversa, R., Li, K., Mehovic, R., Breitkopf, S.B., Chen, D., Howarth, C.L., Yuan, K., Jo, H., Growney, J.D., Weiss, M., Williams, J.
PDB entry 9d0y: Map of endoH-treated hemagglutinin A/Sing/INFIMH/16
Classification: VIRAL PROTEIN
Source organism: Aequorea victoria; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-07
Authors: Torrents de la Pena, A., Ward, A.B., de Paiva Froes Rocha, R.
PDB entry 9d0z: X-ray crystal structure of H157Q variant Thermothelomyces thermophilus polysaccharide monooxygenase 9E
Classification: OXIDOREDUCTASE
Source organism: Thermothelomyces thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-08-07
Authors: Thomas, W.C., Batka, A.E., Marletta, M.A.
PDB entry 9d10: Photoactive Yellow Protein, crystals from PEG, room temperature
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-08-07
Authors: Malla, T.N., Schmidt, M.
PDB entry 9d11: Smarca2 Bromodomain in complex with compound 22
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.684 Å
Deposited: 2024-08-07
Authors: Meagher, J.L., Stuckey, J.A.
PDB entry 9d12: Smarca2 Bromodomain in complex with compound 15
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2024-08-07
Authors: Meagher, J.L., Stuckey, J.A.
PDB entry 9d13: Tt Pah2 D148N delta helix apo
Classification: HYDROLASE
Source organism: Tetrahymena thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-08-07
Authors: Vitkovska, T., Khayyo, V.I., Airola, M.V.
PDB entry 9d14: Tt Pah2 D148N delta helix with magnesium
Classification: HYDROLASE
Source organism: Tetrahymena thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-08-07
Authors: Vitkovska, T., Khayyo, V.I., Airola, M.V.
PDB entry 9d15: Tt Pah2 D148N delta helix with magnesium and tungstate
Classification: HYDROLASE
Source organism: Tetrahymena thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-08-07
Authors: Vitkovska, T., Khayyo, V.I., Airola, M.V.
PDB entry 9d16: Tt Pah2 D155N calcium
Classification: HYDROLASE
Source organism: Tetrahymena thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-08-07
Authors: Vitkovska, T., Airola, M.V.
PDB entry 9d17: Crystal structure of the catalytic region of human MASP-2 with specific inhibitor Compound S1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-08-07
Authors: Sawyer, T.K., Wibowo, A.S., Carter, J., Moussa, S.H.
PDB entry 9d18: Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent-conformation 2 of inactivating domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-08-07
Authors: Agarwal, S., Nimigean, C.
PDB entry 9d19: Ca2+ bound open-inactivated hSlo1 + beta2N-beta4 channel in detergent-conformation 3 of inactivating domain
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-08-07
Authors: Agarwal, S., Nimigean, C.
PDB entry 9d1i: Structure of Ubiquitin bound to KLHDC3-EloB/C
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-07
Authors: Schulman, B.A., Scott, D.C.
PDB entry 9d1j: The alpha-E7 carboxylesterase from Cochliomyia hominivorax
Classification: HYDROLASE
Source organism: Cochliomyia hominivorax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1k: The alpha-E7 carboxylesterase from Anopheles gambiae
Classification: HYDROLASE
Source organism: Anopheles gambiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Esmaeily, M., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1l: Lucilia cuprina alpha esterase 7 directed evolution round 1
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1m: Lucilia cuprina alpha esterase 7 directed evolution round 2
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1n: Lucilia cuprina alpha esterase 7 directed evolution round 3
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1o: Lucilia cuprina alpha esterase 7 directed evolution round 4
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1p: Lucilia cuprina alpha esterase 7 directed evolution round 5
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1q: Lucilia cuprina alpha esterase 7 directed evolution round 6
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1r: Lucilia cuprina alpha esterase 7 directed evolution round 7
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1s: Lucilia cuprina alpha esterase 7 directed evolution round 8
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1t: Lucilia cuprina alpha esterase 7 directed evolution round 9
Classification: HYDROLASE
Source organism: Lucilia cuprina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Fraser, N., Mabbitt, P.D., Jackson, C.J.
PDB entry 9d1u: Map of influenza hemagglutinin A/Sing/INFIMH/16 expressed in GntI- cells
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-08-07
Authors: Torrents de la Pena, A., de Paiva Froes Rocha, R., Ward, A.B.
PDB entry 9d1v: Human Beta-B2 Crystallin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-07
Authors: Frkic, R.L., Jackson, C.J.
PDB entry 9d1w: Cryo-EM structure of PGDM1400 Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2024-08-08
Authors: Kanai, T., Morano, N.C., Shapiro, L., Kwong, P.D., Gorman, J.
PDB entry 9d1x: Crystal structure of FGFR3 bound to indazole inhibitor
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-08-08
Authors: Postel, S., Johnson, Z.L.
PDB entry 9d1y: Structure of G75R Ubiquitin bound to KLHDC3-EloB/C
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-08
Authors: Schulman, B.A., Scott, D.C.
PDB entry 9d1z: Structure of G75Q Ubiquitin bound to KLHDC3-EloB/C
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-08-08
Authors: Schulman, B.A., Scott, D.C.
PDB entry 9d20: Crystal structure of DLK1 in complex with ACVR2B
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.673 Å
Deposited: 2024-08-08
Authors: Ming, Q., Antfolk, D., Luca, V.C.
PDB entry 9d21: Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-08-08
Authors: Nguyen, A.B., Fernandez-Ramirez, M.C., Saelices, L.
PDB entry 9d22: FoxP3 multimers bridge three T4G repeat DNAs
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-08-08
Authors: Leng, F., Hur, S.
PDB entry 9d23: Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-08-08
Authors: Nguyen, A.B., Fernandez-Ramirez, M.C., Saelices, L.
PDB entry 9d24: Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-08-08
Authors: Nguyen, A.B., Fernandez-Ramirez, M.C., Saelices, L.
PDB entry 9d25: Crystal structure of Penicillin Binding Protein 5 (PBP5) N523A E542A Q627A variant of Enterococcus faecium
Classification: HYDROLASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-08
Authors: Choy, M.S., Kobayashi, M.T., Page, R., Peti, W.
PDB entry 9d26: A widespread heme dechelatase in healthy and pathogenic human microbiomes.
Classification: METAL TRANSPORT
Source organism: Bacteroides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-08-08
Authors: Gauvin, C.C., Nath, A.K., Rodrigues da Silva, R., Akpoto, E., Dubois, J.L., Lawrence, C.M.
PDB entry 9d27: Cryo-EM structure of amyloid fibril extracted from kidney of a variant ATTR T60A amyloidosis patient 3
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-08-08
Authors: Nguyen, A.B., Fernandez-Ramirez, M.C., Saelices, L.
PDB entry 9d28: Crystal structure of (+)-sabinene synthase from Thuja plicata
Classification: LYASE
Source organism: Thuja plicata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-08-08
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9d29: Crystal structure of (+)-sabinene synthase from Thuja plicata: condition 2
Classification: LYASE
Source organism: Thuja plicata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2024-08-08
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9d2a: Crystal structure of (+)-sabinene synthase from Thuja plicata: condition 3
Classification: LYASE
Source organism: Thuja plicata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-08-08
Authors: Gaynes, M.N., Christianson, D.W.
PDB entry 9d2b: Symmetry-expanded reconstruction of augmin T-II bonsai on the microtubule
Classification: CELL CYCLE
Source organism: Bos taurus; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-08-08
Authors: Travis, S.M., Zhang, R.
PDB entry 9d2c: Crystal Structure of Tungbindin Treated with Proteinase K
Classification: TRANSPORT PROTEIN
Source organism: Eubacterium limosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2024-08-08
Authors: Zhou, D., Chen, L., Rose, J.P., Wang, B.C.
PDB entry 9d2d: E. coli cysteine desulfurase SufS R359A
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-08-08
Authors: Dunkle, J.A., Frantom, P.A.
PDB entry 9d2e: FoxP3 multimers bridge two T4G repeat DNAs (model1)
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-08
Authors: Leng, F., Hur, S.
PDB entry 9d2f: 3D structure and atomic model of RS3 of mouse respiratory cilia
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2024-08-08
Authors: Yanhe, Z., Xuewu, Z., Daniela, N.
PDB entry 9d2g: Cryo-EM structure of amyloid fibril extracted from liver of a variant ATTR T60A amyloidosis patient 3
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-08
Authors: Nguyen, A.B., Fernandez-Ramirez, M.C., Saelices, L.
PDB entry 9d2h: Stigmatella aurantica bacteriophytochrome protein 2 (SaBphP2), photosensory core module, investigated at ESRF(EBS) ID29. Dark Structure.
Classification: SIGNALING PROTEIN
Source organism: Stigmatella aurantiaca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-08-08
Authors: Schmidt, M., Malla, T.N.
PDB entry 9d2i: Cryo-EM structure of the Strand displacement Complex (III) of Yeast Mitochondrial DNA polymerase Gamma (MIP1) with downstream DNA
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-08-08
Authors: Nayak, A.R., Sokolova, V.O., Sillamaa, S., Sedmen, J., Temiakov, D.
PDB entry 9d2j: FoxP3 multimers bridge two T4G repeat DNAs (model2)
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-08
Authors: Leng, F., Hur, S.
PDB entry 9d2k: SARS-CoV-2 Papain-like Protease (PLpro) complex with covalent inhibitor Jun13567
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-08-08
Authors: Ansari, A., Tan, B., Ruiz, F.X., Arnold, E., Wang, J.
PDB entry 9d2l: FoxP3 multimers bridge four T2G repeat DNAs
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-08
Authors: Leng, F., Hur, S.
PDB entry 9d2m: Map of hemagglutinin A/Sing/INFIMH/16 expressed in 293F cells
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-08-08
Authors: Torrents de la Pena, A., Ward, A.B., de Paiva Froes Rocha, R.
PDB entry 9d2n: Nanotube of F5
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-08-08
Authors: Das, A.
PDB entry 9d2o: PANK3 complex structure with compound PZ-5351
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-08-09
Authors: Yun, M., Lee, R.E.
PDB entry 9d2p: PANK3 complex structure with compound PZ-4127
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-08-09
Authors: Yun, M., Lee, R.E.
PDB entry 9d2q: Crystal structure of E. coli Threonine dehydratase
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-08-09
Authors: Yun, M., Rock, C.O.
PDB entry 9d2r: Crystal structure of E. coli Threonine dehydratase regulatory domain in complex with isoleucine
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-08-09
Authors: Rock, C.O., Yun, M.
PDB entry 9d2s: Crystal structure of E. coli Threonine dehydratase regulatory domain F352A mutant in complex with isoleucine
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2024-08-09
Authors: Rock, C.O., Yun, M.
PDB entry 9d2t: Crystal structure of S. aureus Threonine deaminase regulatory domain
Classification: LYASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-08-09
Authors: Rock, C.O., Yun, M.
PDB entry 9d2u: Crystal structure of KPC-2 complexed with compound 14
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-08-09
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9d2w: [Q:(Cu+):F_pH11] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.15 Å
Deposited: 2024-08-09
Authors: Imstepf, L., Vecchioni, S., Sha, R., Ohayon, Y.P., Woloszyn, K.
PDB entry 9d2x: SpiD ETS-domain (168-273) in complex with the DNA sequence d(AATAAAAGGAAGTGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Raja eglanteria; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-08-09
Authors: Terrell, J.R., Vernon, T.N., Poon, G.M.K.
PDB entry 9d2y: Cryo-EM structure of mycocerosic acid synthase with double KS-ACP crosslinking using C16 alpha-bromoamide. Complex A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2024-08-09
Authors: Heberlig, G.W., Jiang, Z., Burkart, M.D.
PDB entry 9d2z: Cryo-EM structure of mycocerosic acid synthase with single KS-ACP crosslink using C16 alpha-bromoamide. Complex B
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-08-09
Authors: Heberlig, G.W., Jiang, Z., Burkart, M.D.
PDB entry 9d30: Cryo-EM structure of mycocerosic acid synthase with a single DH-ACP crosslink using C16 alpha-bromoamide. Complex C
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-08-09
Authors: Heberlig, G.W., Jiang, Z., Burkart, M.D.
PDB entry 9d31: [Q:(Cu+):F_pH8] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.53 Å
Deposited: 2024-08-09
Authors: Imstepf, L., Vecchioni, S., Sha, R., Ohayon, Y.P., Woloszyn, K.
PDB entry 9d32: Structure of the HKU5 RBD bound to the P. abramus ACE2 receptor
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Pipistrellus abramus; Pipistrellus bat coronavirus HKU5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-09
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9d33: [Q:(Au3+):S_pH11] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.71 Å
Deposited: 2024-08-09
Authors: Imstepf, L., Vecchioni, S., Sha, R., Ohayon, Y.P., Woloszyn, K.
PDB entry 9d34: FIP200 C-terminal CLAW domain (resid. 1490-1594) in complex with phosphorylated TNIP1 FIP200 interacting peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-08-09
Authors: Radford, K.M., Rosencrans, W., Chou, T.F.
PDB entry 9d35: Proteasome core particle assembly intermediate 5-alpha/3-beta/Ump1 purified from Saccharomyces cerevisiae.
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-08-09
Authors: Chen, X., Kaur, M., Roelofs, J., Walters, K.J.
PDB entry 9d36: Structure of the C-terminal Domain of RAGE and Its Inhibitor
Classification: PROTEIN BINDING/INHIBITOR
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-08-09
Authors: Theophall, G.G., Ramasamy, R., Schmidt, A.M., Manigrasso, M., Shekthman, A.
PDB entry 9d37: Nonactive state of Gly-,Glu- bound GluN1a-2B-2D NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2024-08-09
Authors: Hyunook, K., Hiro, F.
PDB entry 9d38: Open state of Gly-,Glu-,EU1622-240 bound GluN1a-2B-2D NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2024-08-09
Authors: Hyunook, K., Hiro, F.
PDB entry 9d39: Gly-,PPDA- bound GluN1a-2B-2D NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-08-09
Authors: Hyunook, K., Hiro, F.
PDB entry 9d3a: Nonactive state of Gly-,Glu- bound GluN1a-2B-2D NMDAR (Low-res)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-08-09
Authors: Hyunook, K., Hiro, F.
PDB entry 9d3b: Gly-,Glu-,(S)-DQP-997-74 bound GluN1a-2B-2D NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2024-08-09
Authors: Hyunook, K., Hiro, F.
PDB entry 9d3c: Gly-,Glu-,(S)-(+)-ketamine bound GluN1a-2B-2D NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2024-08-09
Authors: Hyunook, K., Hiro, F.
PDB entry 9d3d: Cryo-EM structure of PGT145 R100aS Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-08-09
Authors: Hodges, S., Morano, N.C., Shapiro, L., Kwong, P.D., Gorman, J.
PDB entry 9d3e: Cryo-EM structure of CCR6 bound by SQA1 and OXM2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-08-09
Authors: Wasilko, D.J., Wu, H.
PDB entry 9d3f: Water and chloride as allosteric inhibitors in WNK kinase osmosensing
Classification: TRANSFERASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-09
Authors: Akella, R., Goldsmith, E.J.
PDB entry 9d3g: Cryo-EM structure of CCR6 bound by SQA1 and OXM1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-08-10
Authors: Wasilko, D.J., Wu, H.
PDB entry 9d3h: Thermotoga maritima threonylcarbamoyl adenylate synthase (TsaC2) in complex with N-carboxy-L-threonine, magnesium and pyrophosphate.
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-08-10
Authors: Kutshuashvili, A., Swairjo, M.A.
PDB entry 9d3i: Proteasome core particle assembly intermediate 5-alpha/4-beta/Ump1 purified from Saccharomyces cerevisiae.
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2024-08-10
Authors: Chen, X., Kaur, M., Roelofs, J., Walters, K.J.
PDB entry 9d3j: Structure of L9 Fab in complex with CSP_Res5-Y_mC2 Scaffold
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium (Plasmodium)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2024-08-10
Authors: Jain, M., Agrawal, S., WIlson, I.A.
PDB entry 9d3k: Two Dsup molecules in complex with the nucleosome open from both sides
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Ramazzottius varieornatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3l: Two Dsup molecules in complex with the nucleosome open from the left side
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Ramazzottius varieornatus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3m: Two HMGN2s in complex with the nucleosome
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus borealis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3n: 167-bp 5S rDNA nucleosome cross-linked with glutaraldehyde
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus borealis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3o: 167-bp 5S rDNA nucleosome - closed
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus borealis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3p: 167-bp 5S rDNA nucleosome - open I (open only on the downstream side)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus borealis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3q: 167-bp 5S rDNA nucleosome - open II
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus borealis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3r: 147-bp 5S rDNA nucleosome - closed
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus borealis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3s: 147-bp 5S rDNA nucleosome - open I (open on the downstream side)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus borealis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3t: 147-bp 5S rDNA nucleosome cross-linked with glutaraldehyde
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; Xenopus borealis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-11
Authors: Alegrio Louro, J., Cruz-Becerra, G., Kadonaga, J.T., Leschziner, A.E.
PDB entry 9d3v: CRYSTAL STRUCTURE OF EGFR(L858R/T790M/C797S) IN COMPLEX WITH AUR-3418
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-08-12
Authors: Bell, J.A.
PDB entry 9d3w: CRYSTAL STRUCTURE OF EGFR(L858R/T790M/C797S) IN COMPLEX WITH AUR-8250
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2024-08-12
Authors: Bell, J.A.
PDB entry 9d3x: Crystal structure of S. thermophilus class III ribonucleotide reductase bound to dATP
Classification: OXIDOREDUCTASE
Source organism: Streptococcus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-12
Authors: Andree, G.A., Miller, K.R., Drennan, C.L.
PDB entry 9d3y: Crystal structure of the catalytic region of human MASP-2 with specific inhibitor Compound S2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-08-12
Authors: Sawyer, T.K., Wibowo, A.S., Carter, J., Moussa, S.H.
PDB entry 9d40: Crystal structure of the catalytic region of human MASP-2 with specific inhibitor Analog 20
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-08-12
Authors: Sawyer, T.K., Wibowo, A.S., Carter, J., Moussa, S.H.
PDB entry 9d41: Crystal structure of N-terminal domain of Borealin (20-88) in complex with synthetic antibody fragment
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-08-12
Authors: Filippova, E.V., Hou, J., Mukherjee, S., Kossiakoff, A.A.
PDB entry 9d43: Cryo-EM structure of unliganded yeast Exportin Msn5
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-08-12
Authors: Fung, H.Y.J., Chook, Y.M.
PDB entry 9d44: Crystal structure of Co(II)-bound polysaccharide deacetylase from Bacteroides ovatus
Classification: HYDROLASE
Source organism: Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-08-12
Authors: Lowenstein, J.C., McLaughlin, K.J.
PDB entry 9d45: Cryo-EM structure of yeast Exportin Msn5 bound to cargo Pho4 and RanGTP
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-12
Authors: Fung, H.Y.J., Chook, Y.M.
PDB entry 9d46: The cryo-EM structure of the yeast RAD51 filament bound to ssDNA in the presence of ATP
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-08-12
Authors: Shin, Y., Greene, E.C.
PDB entry 9d47: Atomic model of Candida albicans Fatty Acid Synthase (FAS) in complex with Palmitoyl-CoA (in vitro binding)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Candida albicans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-08-12
Authors: Hasan, N.S.M., Keszei, F.A.A., Mazhab-Jafari, M.T.