LiteFold/PDB huggingface dataset:
PDB entry 8da3: Coevolved affibody-Z domain pair LL1.c1
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.06 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8da4: Coevolved affibody-Z domain pair LL1.c2
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8da5: Coevolved affibody-Z domain pair LL1.c4
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8da6: Coevolved affibody-Z domain pair LL1.c5
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8da7: Coevolved affibody-Z domain pair LL1.c6
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8da8: Coevolved affibody-Z domain pair LL2.c1
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8da9: Coevolved affibody-Z domain pair LL2.c3
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8daa: Coevolved affibody-Z domain pair LL2.c7
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8dab: Coevolved affibody-Z domain pair LL2.c17
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.134 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8dac: Coevolved affibody-Z domain pair LL2.c22
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2022-06-13
Authors: Jude, K.M., Yang, A., Garcia, K.C.
PDB entry 8dad: SARS-CoV-2 receptor binding domain in complex with AZ090 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2022-06-13
Authors: Zong, S., Wang, Z., Gaebler, C., Nussenzweig, M.
PDB entry 8dae: Arabidopsis thaliana bifunctional dihydrofolate reductase-thymidylate synthase
Classification: TRANSFERASE, OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-13
Authors: Bond, C.S., Haywood, J.
PDB entry 8daf: Human SF-1 LBD bound to synthetic agonist 6N-10CA and bacterial phospholipid
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-06-13
Authors: D'Agostino, E.H., Cato, M.L., Ortlund, E.A.
PDB entry 8dag: [8 bp center] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.16 Å
Deposited: 2022-06-13
Authors: Lu, B., Vecchioni, S., Ohayon, Y.P., Seeman, N.C., Mao, C., Sha, R.
PDB entry 8dah: [20 bp edge] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.47 Å
Deposited: 2022-06-13
Authors: Lu, B., Vecchioni, S., Ohayon, Y.P., Seeman, N.C., Mao, C., Sha, R.
PDB entry 8dai: E. coli DHFR complex with NADP+ and 10-methylfolate
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2022-06-13
Authors: Greisman, J.B., Brookner, D.E., Hekstra, D.R.
PDB entry 8daj: Structure and Biochemistry of a Promiscuous Thermophilic Polyhydroxybutyrate Depolymerase from Lihuaxuella thermophilia
Classification: BIOSYNTHETIC PROTEIN
Source organism: Lihuaxuella thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2022-06-13
Authors: Thomas, G.M., Quirk, S., Huard, D.J.E., Lieberman, R.L.
PDB entry 8dak: Crystal structure of the GDP-D-glycero-4-keto-d-lyxo-heptose-3-epimerase from Campylobacter jejuni, serotype HS:3
Classification: ISOMERASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-13
Authors: Thoden, J.B., Ghosh, M.K., Xiang, D.F., Raushel, F.M., Holden, H.M.
PDB entry 8dal: The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 4-(benzyloxy)-6-bromo-3-hydroxypicolinonitrile
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-13
Authors: Kohlbrand, A.J., Stokes, R.W., Karges, J., Seo, H., Sankaran, B., Cohen, S.M.
PDB entry 8dam: nbF3:nbE8:CaV beta subunit 1b complex
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Lama glama; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-13
Authors: Nirwan, N., Minor, D.L.
PDB entry 8dan: CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Classification: VIRUS LIKE PARTICLE
Source organism: Asarcornis scutulata; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.74 Å
Deposited: 2022-06-13
Authors: Zimmerman, M.I., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8dao: Crystal structure of SARS-CoV-2 spike stem fusion peptide in complex with neutralizing antibody COV44-79
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-06-13
Authors: Lin, T.H., Lee, C.C.D., Yuan, M., Wilson, I.A.
PDB entry 8dap: [GA/TC] Self-Assembled 3D DNA Tensegrity Triangle with 24 bp Arm Length forming a Trigonal Hexagon
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.47 Å
Deposited: 2022-06-13
Authors: Lu, B., Vecchioni, S., Ohayon, Y.P., Seeman, N.C., Mao, C., Sha, R.
PDB entry 8daq: CryoEM structure of Western equine encephalitis virus VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.35 Å
Deposited: 2022-06-13
Authors: Zimmerman, M.I., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8dar: Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex unbound but in the presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-06-14
Authors: Lee, H.G., Lima, C.D.
PDB entry 8das: Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intA)
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-06-14
Authors: Lee, H.G., Lima, C.D.
PDB entry 8dat: Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intB)
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-06-14
Authors: Lee, H.G., Lima, C.D.
PDB entry 8dau: Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two folded ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (uA)
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-06-14
Authors: Lee, H.G., Lima, C.D.
PDB entry 8dav: Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uC)
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-06-14
Authors: Lee, H.G., Lima, C.D.
PDB entry 8daw: Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uD)
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-06-14
Authors: Lee, H.G., Lima, C.D.
PDB entry 8dax: New insights into the P186 flip and oligomeric state of Staphylococcus aureus exfoliative toxin E: implications for the exfoliative mechanism
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2022-06-14
Authors: Gismene, C., Nascimento, A.F.Z., Hernandez-Gonzalez, J.E., Santisteban, A.R.N., de Moraes, F.R., Arni, R.K., Mariutti, R.B.
PDB entry 8day: Crystal Structure of DMATS1 prenyltransferase in complex with L-Tyr and DMSPP
Classification: TRANSFERASE
Source organism: Fusarium fujikuroi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2022-06-14
Authors: Eaton, S.A., Ronnebaum, T.A., Roose, B.W., Christianson, D.W.
PDB entry 8daz: Crystal structure of DMATS1 prenyltransferase in complex with L-Trp and GSPP
Classification: TRANSFERASE
Source organism: Fusarium fujikuroi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2022-06-14
Authors: Eaton, S.A., Ronnebaum, T.A., Roose, B.W., Christianson, D.W.
PDB entry 8db0: Crystal structure of DMATS1 prenyltransferase in complex with L-Trp and DMSPP
Classification: TRANSFERASE
Source organism: Fusarium fujikuroi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-06-14
Authors: Eaton, S.A., Ronnebaum, T.A., Roose, B.W., Christianson, D.W.
PDB entry 8db1: Crystal structure of native DMATS1 prenyltransferase
Classification: TRANSFERASE
Source organism: Fusarium fujikuroi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2022-06-14
Authors: Eaton, S.A., Ronnebaum, T.A., Roose, B.W., Christianson, D.W.
PDB entry 8db2: Q108K:K40L:T51C:T53A:R58L:Q38F mutant of hCRBPII bound to synthetic fluorophore CM1V
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-14
Authors: Bingham, C.R., Geiger, J.H., Borhan, B., Staples, R.
PDB entry 8db3: Crystal structure of KaiC with truncated C-terminal coiled-coil domain
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-06-14
Authors: Padua, R.A.P., Grant, T., Pitsawong, W., Hoemberger, M.S., Otten, R., Bradshaw, N., Grigorieff, N., Kern, D.
PDB entry 8db4: Crystal structure of the peanut allergen Ara h 2 bound by two neutralizing antibodies 22S1 and 13T1
Classification: ALLERGEN/IMMUNE SYSTEM
Source organism: Arachis hypogaea; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-14
Authors: Min, J., Pedersen, L.C.
PDB entry 8db5: Crystal structure of the GDP-D-glycero-4-keto-d-lyxo-heptose-3,5-epimerase from Campylobacter jejuni, serotype HS:15
Classification: ISOMERASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-06-14
Authors: Thoden, J.B., Ghosh, M.K., Xiang, D.F., Raushel, F.M., Holden, H.M.
PDB entry 8db6: Adenosine/guanosine nucleoside hydrolase
Classification: HYDROLASE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-06-14
Authors: Muellers, S.N., Allen, K.N., Stockman, B.J.
PDB entry 8db7: Adenosine/guanosine nucleoside hydrolase bound to a fragment inhibitor
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2022-06-14
Authors: Muellers, S.N., Allen, K.N., Stockman, B.J.
PDB entry 8db8: Adenosine/guanosine nucleoside hydrolase bound to ImH
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2022-06-14
Authors: Muellers, S.N., Allen, K.N., Stockman, B.J.
PDB entry 8db9: Adenosine/guanosine nucleoside hydrolase bound to inhibitor
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-06-14
Authors: Muellers, S.N., Allen, K.N., Stockman, B.J.
PDB entry 8dba: Crystal structure of dodecameric KaiC
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-06-14
Authors: Padua, R.A.P., Grant, T., Pitsawong, W., Hoemberger, M.S., Otten, R., Bradshaw, N., Grigorieff, N., Kern, D.
PDB entry 8dbb: Crystal structure of DDT with the selective inhibitor 2,5-Pyridinedicarboxylic Acid
Classification: LYASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-06-14
Authors: Parkins, A., Banumathi, S., Pantouris, G.
PDB entry 8dbc: Human PRPS1 with Phosphate; Hexamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbd: Human PRPS1 with Phosphate; Filament Interface
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbe: Human PRPS1 with ADP; Hexamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbf: Human PRPS1 with ADP; Filament Interface
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbg: Human PRPS1 with Phosphate and ATP; Hexamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbh: Human PRPS1 with Phosphate and ATP; Filament Interface
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbi: Human PRPS1 with Phosphate, ATP, and R5P; Hexamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbj: Human PRPS1 with Phosphate, ATP, and R5P; Filament Interface
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbk: Human PRPS1 with Phosphate, ATP, and R5P; Hexamer with resolved catalytic loops
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbl: Human PRPS1 with Phosphate and PRPP; Hexamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbm: Human PRPS1 with Phosphate and PRPP; Filament Interface
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbn: Human PRPS1-E307A engineered mutation with Phosphate, ATP, and R5P; Hexamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbo: Human PRPS1-E307A engineered mutation with ADP; Hexamer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-06-14
Authors: Hvorecny, K.L., Kollman, J.M.
PDB entry 8dbp: E. coli ATP synthase imaged in 10mM MgATP State1 ""half-up
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-06-14
Authors: Sobti, M., Stewart, A.G.
PDB entry 8dbq: E. coli ATP synthase imaged in 10mM MgATP State1 ""half-up"" Fo classified
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-06-14
Authors: Sobti, M., Stewart, A.G.
PDB entry 8dbr: E. coli ATP synthase imaged in 10mM MgATP State2 ""half-up
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-14
Authors: Sobti, M., Stewart, A.G.
PDB entry 8dbs: E. coli ATP synthase imaged in 10mM MgATP State2 ""half-up"" Fo classified
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-06-14
Authors: Sobti, M., Stewart, A.G.
PDB entry 8dbt: E. coli ATP synthase imaged in 10mM MgATP State2 ""down
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-14
Authors: Sobti, M., Stewart, A.G.
PDB entry 8dbu: E. coli ATP synthase imaged in 10mM MgATP State2 ""down"" Fo classified
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-14
Authors: Sobti, M., Stewart, A.G.
PDB entry 8dbv: E. coli ATP synthase imaged in 10mM MgATP State3 ""down
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-06-14
Authors: Sobti, M., Stewart, A.G.
PDB entry 8dbw: E. coli ATP synthase imaged in 10mM MgATP State3 ""down"" Fo classified
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-06-14
Authors: Sobti, M., Stewart, A.G.
PDB entry 8dbx: CryoEM structure of partially oxidized MoFe-protein on ultrathin carbon
Classification: METAL BINDING PROTEIN, OXIDOREDUCTASE
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.92 Å
Deposited: 2022-06-14
Authors: Warmack, R.A., Rees, D.C.
PDB entry 8dby: CryoEM structure of anaerobically prepared nitrogenase MoFe-protein on ultrathin carbon
Classification: METAL BINDING PROTEIN, OXIDOREDUCTASE
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2022-06-15
Authors: Warmack, R.A., Rees, D.C.
PDB entry 8dbz: CryoEM structure of Hantavirus ANDV Gn(H) protein complex with 2Fabs ANDV-5 and ANDV-34
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Andes orthohantavirus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-06-15
Authors: Binshtein, E., Crowe, J.E.
PDB entry 8dc0: Rat Betaglycan Zona Pellucida Domain (ZPC) in complex with mini monomer TGFb2 (mmTGF-b2-7M2R)
Classification: CYTOKINE
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-06-15
Authors: Wieteska, L., Taylor, A.B., Hinck, A.P.
PDB entry 8dc1: Structural and biochemical characterization of L. interrogans Lsa45 reveals a penicillin-binding protein with esterase activity
Classification: HYDROLASE
Source organism: Leptospira interrogans serovar Copenhageni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2022-06-15
Authors: Santos, J.C., Nascimento, A.L.T.O.
PDB entry 8dc2: Cryo-EM structure of CasLambda (Cas12l) bound to crRNA and DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: uncultured virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2022-06-15
Authors: Al-Shayeb, B., Skopintsev, P., Soczek, K., Doudna, J.
PDB entry 8dc4: Crystal structure of p53 Y220C covalently bound to carbazole KG3
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-06-15
Authors: Guiley, K.Z., Shokat, K.M.
PDB entry 8dc5: CCHFV GP38 Hoti/Kosovo
Classification: VIRAL PROTEIN
Source organism: Crimean-Congo hemorrhagic fever orthonairovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2022-06-15
Authors: Durie, I.A., Bergeron, E., Pegan, S.D., McGuire, J.
PDB entry 8dc6: Crystal structure of p53 Y220C covalently bound to indole KG6
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.60001 Å
Deposited: 2022-06-15
Authors: Guiley, K.Z., Shokat, K.M.
PDB entry 8dc7: Crystal structure of p53 Y220C covalently bound to indole KG10
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98701 Å
Deposited: 2022-06-15
Authors: Guiley, K.Z., Shokat, K.M.
PDB entry 8dc8: Crystal structure of p53 Y220C covalently bound to azaindole KG13
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7201 Å
Deposited: 2022-06-15
Authors: Guiley, K.Z., Shokat, K.M.
PDB entry 8dc9: RNA ligase RtcB from Pyrococcus horikoshii in complex with Mn2+ and GTP
Classification: LIGASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2022-06-16
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8dca: RNA ligase RtcB from Pyrococcus horikoshii in complex with Co2+ and GTP
Classification: LIGASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2022-06-16
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8dcb: RNA ligase RtcB from Pyrococcus horikoshii in complex with Ni2+ and GTP
Classification: LIGASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-06-16
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8dcc: SARS-CoV-2 Receptor-Binding Domain SPEEDesign Immunogen 3 Bound to P2B-2F6 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-06-16
Authors: Dickey, T.D., Tolia, N.H.
PDB entry 8dcd: RNA ligase RtcB from Pyrococcus horikoshii in complex with Zn2+ and GTP
Classification: LIGASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2022-06-16
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8dce: SARS-CoV-2 Receptor-Binding Domain SPEEDesign Immunogen 1 Bound to C144 scFv
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-16
Authors: Tang, W.K., Tolia, N.H.
PDB entry 8dcf: RNA ligase RtcB from Pyrococcus horikoshii in complex with Cu2+ and GTP
Classification: LIGASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-06-16
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8dcg: Structure of guanylylated RNA ligase RtcB from Pyrococcus horikoshii
Classification: LIGASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-06-16
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
PDB entry 8dch: Crystal Structure of a highly resistant HIV-1 protease Clinical isolate PR10x with GRL-0519 (tris-tetrahydrofuran as P2 ligand)
Classification: VIRAL PROTEIN, HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2022-06-16
Authors: Wong-Sam, A.E., Wang, Y.-F., Weber, I.T.
PDB entry 8dci: Crystal Structure of a highly resistant HIV-1 protease Clinical isolate PR10x (inhibitor-free)
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2022-06-16
Authors: Wong-Sam, A.E., Wang, Y.-F., Weber, I.T.
PDB entry 8dcj: [A:T] Self-Assembled 3D DNA Rhombohedral Tensegrity Triangle
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.33 Å
Deposited: 2022-06-16
Authors: Lu, B., Vecchioni, S., Ohayon, Y.P., Seeman, N.C., Mao, C., Sha, R.
PDB entry 8dck: Structure of hemolysin A secretion system HlyB/D complex, ATP-bound
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli CFT073
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-16
Authors: Zhao, H., Chen, J.
PDB entry 8dcl: Crystal structure of the GDP-D-glycero-4-keto-D-lyxo-heptose-3-epimerase from campylobacter jejuni, serotype HS:23/36
Classification: ISOMERASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-06-16
Authors: Thoden, J.B., Ghosh, M.K., Xiang, D.F., Raushel, F.M., Holden, H.M.
PDB entry 8dcm: Crystal structure of Clostridioides difficile binary toxin proCDTb lacking D4 in complex with BINTOXB/22 Fab
Classification: TOXIN/IMMUNE SYSTEM
Source organism: Clostridioides difficile; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-06-16
Authors: Goldsmith, J.A., McLellan, J.S.
PDB entry 8dcn: Crystal structure of Clostridioides difficile binary toxin CDTb D4 fragment in complex with BINTOXB/9 Fab
Classification: TOXIN/IMMUNE SYSTEM
Source organism: Clostridioides difficile; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-06-16
Authors: Goldsmith, J.A., McLellan, J.S.
PDB entry 8dco: Crystal structure of the GDP-D-glycero-4-keto-D-lyxo-heptose-3,5-epimerase from Campylobacter jejuni, serotype HS:42
Classification: ISOMERASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-06-17
Authors: Thoden, J.B., Xiang, D.F., Ghosh, M.K., Raushel, F.M., Holden, H.M.
PDB entry 8dcp: PI 3-kinase alpha with nanobody 3-126
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2022-06-17
Authors: Hart, J.R., Liu, X., Pan, C., Liang, A., Ueno, L., Xu, Y., Quezada, A., Zou, X., Yang, S., Zhou, Q., Schoonooghe, S., Hassanzadeh-Ghassabeh, G., Xia, T., Shui, W., Yang, D., Vogt, P.K., Wang, M.-W.
PDB entry 8dcq: CRYSTAL STRUCTURE OF HIV-1 LM/HT CLADE A/E CRF01 GP120 CORE IN COMPLEX WITH YIR-821
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-06-17
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 8dcr: Cryo-EM structure of dobutamine-bound beta1-adrenergic receptor in complex with heterotrimeric Gs-protein
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Lama glama; Meleagris gallopavo
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-06-17
Authors: Su, M., Paknejad, N., Hite, R.K., Huang, X.Y.
PDB entry 8dcs: Cryo-EM structure of cyanopindolol-bound beta1-adrenergic receptor in complex with heterotrimeric Gs-protein
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Lama glama; Meleagris gallopavo
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-06-17
Authors: Su, M., Paknejad, N., Hite, R.K., Huang, X.Y.
PDB entry 8dct: Lysozyme cluster 3 dual apo structure
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-17
Authors: Soares, A.S., Yamada, Y., Jakoncic, J., Schneider, D.K., Bernstein, H.J.
PDB entry 8dcu: Lysozyme cluster 0028 (benzamidine ligand)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-17
Authors: Soares, A.S., Yamada, Y., Jakoncic, J., Schneider, D.K., Bernstein, H.J.
PDB entry 8dcv: Lysozyme cluster 0043, NAG ligand
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-17
Authors: Soares, A.S., Yamada, Y., Jakoncic, J., Schneider, D.K., Bernstein, H.J.
PDB entry 8dcw: Lysozyme cluster 0062 (NAG and benzamidine ligands)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-17
Authors: Soares, A.S., Yamada, Y., Jakoncic, J., Schneider, D.K., Bernstein, H.J.
PDB entry 8dcx: PI 3-kinase alpha with nanobody 3-159
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-06-17
Authors: Hart, J.R., Liu, X., Pan, C., Liang, A., Ueno, L., Xu, Y., Quezada, A., Zou, X., Yang, S., Zhou, Q., Schoonooghe, S., Hassanzadeh-Ghassabeh, G., Xia, T., Shui, W., Yang, D., Vogt, P.K., Wang, M.-W.
PDB entry 8dcy: CCHFV GP38 Hoti/Kosovo bound with 13G8 Fab
Classification: VIRAL PROTEIN
Source organism: Crimean-Congo hemorrhagic fever orthonairovirus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2022-06-17
Authors: Durie, I.A., Bergeron, E., Pegan, S.D., McGuire, J.
PDB entry 8dcz: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) M165Y Mutant in Complex with Nirmatrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-06-17
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8dd0: The structure of the native cardiac thin filament junction region
Classification: MOTOR PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-06-17
Authors: Galkin, V.E., Risi, C.M.
PDB entry 8dd1: SARS-CoV-2 Main Protease (Mpro) H164N Mutant in Complex with Inhibitor GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2022-06-17
Authors: Lewandowski, E.M., Butler, S.G., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8dd2: Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus Zolpidem
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-06-17
Authors: Zhu, S., Hibbs, R.E.
PDB entry 8dd3: Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus DMCM
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-06-17
Authors: Zhu, S., Hibbs, R.E.
PDB entry 8dd4: PI 3-kinase alpha with nanobody 3-142
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-17
Authors: Hart, J.R., Liu, X., Pan, C., Liang, A., Ueno, L., Xu, Y., Quezada, A., Zou, X., Yang, S., Zhou, Q., Schoonooghe, S., Hassanzadeh-Ghassabeh, G., Xia, T., Shui, W., Yang, D., Vogt, P.K., Wang, M.-W.
PDB entry 8dd5: Crystal structure of KAT6A in complex with inhibitor CTx-648 (PF-9363)
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2022-06-17
Authors: Greasley, S.E., Johnson, E., Brodsky, O.
PDB entry 8dd6: SARS-CoV-2 Main Protease (Mpro) H163A Mutant in Complex with GC376
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-17
Authors: Tran, N., McLeod, M.J., Kalyaanamoorthy, S., Ganesan, A., Holyoak, T.
PDB entry 8dd7: The Cryo-EM structure of Drosophila Cryptochrome in complex with Timeless
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Drosophila melanogaster; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-06-17
Authors: Feng, S., Lin, C., DeOliveira, C.C., Crane, B.R.
PDB entry 8dd8: PI 3-kinase alpha with nanobody 3-142, crosslinked with DSG
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-17
Authors: Hart, J.R., Liu, X., Pan, C., Liang, A., Ueno, L., Xu, Y., Quezada, A., Zou, X., Yang, S., Zhou, Q., Schoonooghe, S., Hassanzadeh-Ghassabeh, G., Xia, T., Shui, W., Yang, D., Vogt, P.K., Wang, M.-W.
PDB entry 8dd9: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) S144L Mutant in Complex with Inhibitor GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-06-17
Authors: Lewandowski, E.M., Jacobs, L.M.C., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8dda: Crystal structure of human aminoadipate semialdehyde synthase (AASS), lysine ketoglutarate reductase (LKR) domain
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-06-17
Authors: Muniz, J.R.C., Kopec, J., Rembeza, E., Burgess-Brown, N., Bountra, C., Yue, W.W.
PDB entry 8ddb: The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 4-(benzyloxy)-6-bromo-3-hydroxypicolinic acid
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Influenza A virus (A/California/04/2009(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-06-17
Authors: Kohlbrand, A.J., Stokes, R.W., Karges, J., Seo, H., Sankaran, B., Cohen, S.M.
PDB entry 8ddc: Intramembrane recognition between transmembrane domains of IL-7R and common gamma chain
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2022-06-17
Authors: Cai, T., Lenoir Capello, R., Chou, J.J.
PDB entry 8ddd: Intramembrane recognition between transmembrane domains of IL-9R and common gamma chain
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2022-06-17
Authors: Lenoir Capello, R., Cai, T., Chou, J.J.
PDB entry 8dde: The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 4-(benzyloxy)-6-bromo-2-(1H-tetrazol-5-yl) yridine-3-ol
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2022-06-17
Authors: Kohlbrand, A.J., Stokes, R.W., Karges, J., Seo, H., Sankaran, B., Cohen, S.M.
PDB entry 8ddf: Quasi-racemic mixture of L-FWF and D-FYF peptide reveals rippled beta-sheet
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-06-18
Authors: Sawaya, M.R., Hazari, A., Eisenberg, D.E.
PDB entry 8ddg: FYF peptide forms a standard beta-sheet
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 0.9 Å
Deposited: 2022-06-18
Authors: Sawaya, M.R., Hazari, A., Eisenberg, D.E., Vlahakis, N.W.
PDB entry 8ddh: Racemic mixture of FYF peptide reveals rippled beta-sheet
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-06-18
Authors: Sawaya, M.R., Hazari, A., Eisenberg, D.E.
PDB entry 8ddi: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) E166N Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-06-18
Authors: Lewandowski, E.M., Jacobs, L.M.C., Chen, Y.
PDB entry 8ddj: Open MscS in PC14.1 Nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-18
Authors: Reddy, B.G., Bavi, N., Perozo, E.
PDB entry 8ddk: CCHFV GP38 Hoti/Kosovo bound with CC5_17
Classification: VIRAL PROTEIN
Source organism: Crimean-Congo hemorrhagic fever orthonairovirus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.86 Å
Deposited: 2022-06-18
Authors: Durie, I.A., Bergeron, E., Pegan, S.D., McGuire, J.
PDB entry 8ddl: SARS-CoV-2 Main Protease (Mpro) H163A Mutant Apo Structure
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-06-18
Authors: Tran, N., McLeod, M.J., Kalyaanamoorthy, S., Ganesan, A., Holyoak, T.
PDB entry 8ddm: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) E166R Mutant in Complex with Inhibitor GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2022-06-18
Authors: Lewandowski, E.M., Chen, Y.
PDB entry 8ddp: Crystal structure of SRS57 from Toxoplasma gondii
Classification: MEMBRANE PROTEIN
Source organism: Toxoplasma gondii (strain ATCC 50611 / Me49)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.591 Å
Deposited: 2022-06-18
Authors: Ramaswamy, R., Boulanger, M.J.
PDB entry 8ddq: cryo-EM structure of TRPM3 ion channel in the presence of soluble Gbg, focused on channel
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-06-18
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ddr: cryo-EM structure of TRPM3 ion channel in the absence of PIP2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-18
Authors: Zhao, C., MacKinnon, R.
PDB entry 8dds: cryo-EM structure of TRPM3 ion channel in the presence of PIP2, state1
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-06-18
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ddt: cryo-EM structure of TRPM3 ion channel in the presence of PIP2, state2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-18
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ddu: cryo-EM structure of TRPM3 ion channel in the presence of PIP2, state3
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-06-19
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ddv: Cryo-EM structure of TRPM3 ion channel in the presence of PIP2, state4
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-19
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ddw: cryo-EM structure of TRPM3 ion channel in complex with Gbg, tethered by ALFA-nanobody
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2022-06-19
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ddx: cryo-EM structure of TRPM3 ion channel in complex with Gbg in the presence of PIP2, tethered by ALFA-nanobody
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-06-19
Authors: Zhao, C., MacKinnon, R.
PDB entry 8ddy: Helical rods of far-red light-absorbing allophycocyanin in Synechococcus sp.
Classification: PHOTOSYNTHESIS
Source organism: Synechococcus sp. 63AY4M1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2022-06-19
Authors: Gisriel, C.J., Shen, G.S., Soulier, N.T., Flesher, D.A., Brudvig, G.W., Bryant, D.A.
PDB entry 8ddz: TEM-1 beta-lactamase A237Y
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-06-19
Authors: Ji, Z., Boxer, S.G., Mathews, I.I.
PDB entry 8de0: TEM-1 beta-lactamase covalently bound to avibactam
Classification: HYDROLASE/INHIBITOR
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-06-19
Authors: Ji, Z., Boxer, S.G., Mathews, I.I.
PDB entry 8de1: TEM-1 beta-lactamase A237Y mutant covalently bound to avibactam
Classification: HYDROLASE/INHIBITOR
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2022-06-19
Authors: Ji, Z., Boxer, S.G., Mathews, I.I.
PDB entry 8de2: TEM-1 beta-lactamase A237Y mutant covalently bound to avibactam, a room temperature structure
Classification: HYDROLASE/INHIBITOR
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-06-19
Authors: Ji, Z., Boxer, S.G., Mathews, I.I.
PDB entry 8de3: Native serotonin transporter in complex with 15B8 Fab antibody in the presence of cocaine
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-06-19
Authors: Yang, D., Gouaux, E.
PDB entry 8de4: Native serotonin transporter in complex with 15B8 Fab in the presence of methamphetamine
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-06-19
Authors: Yang, D., Gouaux, E.
PDB entry 8de5: Structure of glyceraldehyde-3-phosphate dehydrogenase from Paracoccidioides lutzii
Classification: OXIDOREDUCTASE
Source organism: Paracoccidioides lutzii Pb01
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-06-19
Authors: Hernandez-Prieto, J.H., Martini, V.P., Iulek, J.
PDB entry 8de6: Oligomeric C9 in complex with aE11 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-20
Authors: Bayly-Jones, C.
PDB entry 8de7: Cryo-EM structure of the zebrafish two pore domain K+ channel TREK1 (K2P2.1) in DDM detergent
Classification: MEMBRANE PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2022-06-20
Authors: Schmidpeter, P.A.M., Nimigean, C.M., Riegelhaupt, P.M.
PDB entry 8de8: Cryo-EM structure of the zebrafish two pore domain K+ channel TREK1 (K2P2.1) in DDM/POPA mixed micelles
Classification: MEMBRANE PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2022-06-20
Authors: Schmidpeter, P.A.M., Nimigean, C.M., Riegelhaupt, P.M.
PDB entry 8de9: Cryo-EM structure of the zebrafish two pore domain K+ channel TREK1 (K2P2.1) in DDM/POPE mixed micelles
Classification: MEMBRANE PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-20
Authors: Schmidpeter, P.A.M., Nimigean, C.M., Riegelhaupt, P.M.
PDB entry 8dea: Scaffold Hopping via Ring Opening Enables Identification of Acyclic Compounds as New Complement Factor D Inhibitors
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.214 Å
Deposited: 2022-06-20
Authors: Raman, K., Babu, Y.S.
PDB entry 8deb: Bacteroides fragilis carboxyspermidine dehydrogenase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-06-20
Authors: McFarlane, J.S., Bouchey, S., Dodd, J.
PDB entry 8dec: Cryo-EM Structure of Western Equine Encephalitis Virus
Classification: VIRUS LIKE PARTICLE
Source organism: Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2022-06-20
Authors: Pletnev, S., Verardi, R., Roedeger, M., Kwong, P.
PDB entry 8ded: Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW19 fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-06-20
Authors: Pletnev, S., Tsybovsky, Y., Verardi, R., Roedeger, M., Kwong, P.
PDB entry 8dee: Asymmetric Unit of Western Equine Encephalitis Virus
Classification: VIRUS LIKE PARTICLE
Source organism: Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-20
Authors: Pletnev, S., Verardi, R., Roedeger, M., Kwong, P.
PDB entry 8def: Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW24 fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2022-06-20
Authors: Pletnev, S., Tsybovsky, Y., Verardi, R., Roedeger, M., Kwong, P.D.
PDB entry 8deg: Crystal structure of DLK in complex with inhibitor DN0011197
Classification: SIGNALING PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2022-06-20
Authors: Srivastava, A., Lexa, K., de Vicente, J.
PDB entry 8deh: Ankyrin domain of SKD3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.815 Å
Deposited: 2022-06-20
Authors: Lee, S., Tsai, F.T.F.
PDB entry 8dei: Structure of the Cac1 KER domain
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-06-20
Authors: Rosas, R., Churchill, M.E.A.
PDB entry 8dej: D. vulgaris type I-C Cascade bound to dsDNA target
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Desulfovibrio vulgaris; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2022-06-20
Authors: O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.
PDB entry 8dek: The structure of the glycopeptidase catalytic domain including the linker of Amuc_1438
Classification: HYDROLASE
Source organism: Akkermansia muciniphila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-06-20
Authors: Medley, B.J., Boraston, A.B.
PDB entry 8del: Trimeric Heme-Free Cytochrome Variant ApoCyt-TriCyt3
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2022-06-20
Authors: Hoffnagle, A.M., Eng, V.H., Tezcan, F.A.
PDB entry 8den: Heme-Free Cytochrome Variant ApoCyt
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2022-06-20
Authors: Hoffnagle, A.H., Eng, V.H., Tezcan, F.A.
PDB entry 8deo: Structure of AAP A domain and B-repeats (residues 351-813) from Staphylococcus epidermidis
Classification: CELL ADHESION
Source organism: Staphylococcus epidermidis RP62A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-21
Authors: Harris, G., Whelan, F., Clark, L., Turkenburg, J.P., Potts, J.R.
PDB entry 8dep: Cryo-EM structure of the human reduced folate carrier, apo condition
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-06-21
Authors: Wright, N.J., Fedor, J.G., Lee, S.-Y.