LiteFold/PDB huggingface dataset:
PDB entry 8djh: Ternary complex of SUMO1 with a phosphomimetic SIM of PML and zinc
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2022-06-30
Authors: Lussier-Price, M., Wahba, H.M., Mascle, X.H., Cappadocia, L., Bourdeau, V., Gagnon, C., Igelmann, S., Sakaguchi, K., Ferbeyre, G., Omichinski, J.G.
PDB entry 8dji: Ternary complex of SUMO1 with the SIM of PML and zinc
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-06-30
Authors: Lussier-Price, M., Wahba, H.M., Mascle, X.H., Cappadocia, L., Bourdeau, V., Gagnon, C., Igelmann, S., Sakaguchi, K., Ferbeyre, G., Omichinski, J.G.
PDB entry 8djj: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2022-06-30
Authors: Khan, M.B., Lu, J., Young, H.S., Lemieux, M.J.
PDB entry 8djk: HMGCR-UBIAD1 Complex State 2
Classification: Oxidoreductase/Immune System
Source organism: Cricetulus griseus; Escherichia coli; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2022-06-30
Authors: Chen, H., Qi, X., Li, X.
PDB entry 8djm: HMGCR-UBIAD1 Complex State 1
Classification: Oxidoreductase/Immune System
Source organism: Cricetulus griseus; Escherichia coli; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2022-07-01
Authors: Chen, H., Qi, X., Li, X.
PDB entry 8djq: Sliding-clamp-DnaE1 peptide
Classification: DNA BINDING PROTEIN
Source organism: Mycolicibacterium thermoresistibile ATCC 19527; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-07-01
Authors: Kapur, M.K., Gray, O.J., Honzatko, R.H., Nelson, S.N.
PDB entry 8djr: Cytosolic ascorbate peroxidase from Sorghum bicolor
Classification: OXIDOREDUCTASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2022-07-01
Authors: Zhang, B., Kang, C.
PDB entry 8djs: Cytosolic ascorbate peroxidase from Sorghum bicolor - one ascorbate complex
Classification: OXIDOREDUCTASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2022-07-01
Authors: Zhang, B., Kang, C.
PDB entry 8djt: Cytosolic ascorbate peroxidase from Sorghum bicolor - four ascorbates complex
Classification: OXIDOREDUCTASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2022-07-01
Authors: Zhang, B., Kang, C.
PDB entry 8dju: Cytosolic ascorbate peroxidase from Sorghum bicolor - bicyclic dehydroascorbic acid complex
Classification: OXIDOREDUCTASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-01
Authors: Zhang, B., Kang, C.
PDB entry 8djv: The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 6-Bromo-3-hydroxy-N-methoxy-4-oxo-1,4-dihydropyridine-2-carboxamide
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2022-07-01
Authors: Kohlbrand, A.J., Stokes, R.W., Karges, J., Seo, H., Sankaran, B., Cohen, S.M.
PDB entry 8djw: Cytosolic ascorbate peroxidase from Sorghum bicolor - hydroperoxo complex
Classification: OXIDOREDUCTASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-01
Authors: Zhang, B., Kang, C.
PDB entry 8djx: Cytosolic ascorbate peroxidase from Sorghum bicolor - Compound II
Classification: OXIDOREDUCTASE
Source organism: Sorghum bicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2022-07-01
Authors: Zhang, B., Kang, C.
PDB entry 8djy: The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 6-Bromo-2-(4,5-dihydro-1H-imidazol-2-yl)-3-hydroxypyridin-4(1H)-one
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-01
Authors: Kohlbrand, A.J., Stokes, R.W., Karges, J., Seo, H., Sankaran, B., Cohen, S.M.
PDB entry 8djz: Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound product
Classification: HYDROLASE
Source organism: Rhodopseudomonas palustris CGA009
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-07-01
Authors: Bingman, C.A., Hall, B.W., Smith, R.W., Fox, B.G., Donohue, T.J.
PDB entry 8dk0: Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound (S)gamma-valerolactone
Classification: HYDROLASE
Source organism: Rhodopseudomonas palustris CGA009
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-07-01
Authors: Bingman, C.A., Hall, B.W., Smith, R.W., Fox, B.G., Donohue, T.J.
PDB entry 8dk1: CryoEM structure of JetABC (head construct) from Pseudomonas aeruginosa PA14
Classification: DNA BINDING PROTEIN/DNA
Source organism: Pseudomonas aeruginosa PA14
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-07-01
Authors: Deep, A., Gu, Y., Gao, Y., Ego, K., Herzik, M., Zhou, H., Corbett, K.
PDB entry 8dk2: CryoEM structure of Pseudomonas aeruginosa PA14 JetABC in an unclamped state trapped in ATP dependent dimeric form
Classification: DNA BINDING PROTEIN/DNA
Source organism: Pseudomonas aeruginosa PA14; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-07-01
Authors: Deep, A., Gu, Y., Gao, Y., Ego, K., Herzik, M., Zhou, H., Corbett, K.
PDB entry 8dk3: CryoEM structure of Pseudomonas aeruginosa PA14 JetC ATPase domain bound to DNA and cWHD domain of JetA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Pseudomonas aeruginosa PA14; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2022-07-01
Authors: Deep, A., Gu, Y., Gao, Y., Ego, K., Herzik, M., Zhou, H., Corbett, K.
PDB entry 8dk4: Peroxisome proliferator-activated receptor gamma in complex with VSP-51-2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-07-02
Authors: Ma, L., Zhou, X.E., Suino-Powell, K., Hou, N., Zhou, Z., Luo, J., Xu, H.E., Yi, W.
PDB entry 8dk5: Structure of 187bp LIN28b nucleosome with site 0 mutation
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2022-07-02
Authors: Lian, T., Guan, R., Bai, Y.
PDB entry 8dk6: Structure of hepatitis C virus envelope N-terminal truncated glycoprotein 2 (E2) (residues 456-713) from J6 genotype
Classification: VIRAL PROTEIN
Source organism: Hepatitis C virus isolate HC-J6; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-07-03
Authors: Kumar, A., Rohe, T., Elrod, E.J., Khan, A.G., Dearborn, A.D., Kissinger, R., Grakoui, A., Marcotrigiano, J.
PDB entry 8dk7: Crystal structure of theophylline aptamer soaked with TAL2
Classification: RNA/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2022-07-04
Authors: Menichelli, E., Spraggon, G.
PDB entry 8dk8: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-07-04
Authors: Khan, M.B., Lu, J., Young, H.S., Lemieux, M.J.
PDB entry 8dk9: Sliding-clamp-DinX peptide
Classification: DNA BINDING PROTEIN
Source organism: Mycolicibacterium thermoresistibile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-05
Authors: Kapur, M.K., Gray, O.J., Honzatko, R.H., Nelson, S.N.
PDB entry 8dka: Abp2D receptor binding domain R86E
Classification: CELL ADHESION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-05
Authors: Tamadonfar, K.O., Pinkner, J.S., Dodson, K.W., Hultgren, S.J.
PDB entry 8dkb: Crystal Structure of human YEATS4 in complex with Pfizer small molecule compound 3b
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2022-07-05
Authors: Dias, J.M., Byrnes, L.J., Varghese, A.H.
PDB entry 8dkc: P. gingivalis RNA Polymerase
Classification: TRANSCRIPTION
Source organism: Porphyromonas gingivalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-05
Authors: Liu, B., Bu, F.
PDB entry 8dkd: Sliding clamp from M. thermoresistibile
Classification: DNA BINDING PROTEIN
Source organism: Mycolicibacterium thermoresistibile ATCC 19527
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-07-05
Authors: Kapur, M.K., Gray, O.J., Honzatko, R.H., Nelson, S.N.
PDB entry 8dke: Cryo-EM structure of cystinosin in a cytosol-open state
Classification: MEMBRANE PROTEIN/Transport protein
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-07-05
Authors: Schmiege, P., Li, X.
PDB entry 8dkf: Antibody DH1030.1 Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-07-05
Authors: Gobeil, S., Acharya, P.
PDB entry 8dkg: Structure of PYCR1 Thr171Met variant complexed with NADH
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-07-05
Authors: Meeks, K.R., Tanner, J.J.
PDB entry 8dkh: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-07-05
Authors: Lu, J., Khan, M.B., Young, H.S., Lemieux, M.J.
PDB entry 8dki: Cryo-EM structure of cystinosin in a lumen-open state
Classification: MEMBRANE PROTEIN/Transport protein
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2022-07-05
Authors: Schmiege, P., Li, X.
PDB entry 8dkj: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2022-07-05
Authors: Lu, J., Khan, M.B., Young, H.S., Lemieux, M.J.
PDB entry 8dkk: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-05
Authors: Lu, J., Khan, M.B., Young, H.S., Lemieux, M.J.
PDB entry 8dkl: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-05
Authors: Lu, J., Khan, M.B., Young, H.S., Lemieux, M.J.
PDB entry 8dkm: Cryo-EM structure of cystine-bound cystinosin in a lumen-open state
Classification: MEMBRANE PROTEIN/Transport protein
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2022-07-05
Authors: Schmiege, P., Li, X.
PDB entry 8dkn: PPARg bound to T0070907 and Co-R peptide
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-07-05
Authors: Larsen, N.A., Tsai, J.
PDB entry 8dko: Minimal PutA proline dehydrogenase domain (design #1) complexed with S-(-)-tetrahydro-2-furoic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-05
Authors: Tanner, J.J., Bogner, A.N.
PDB entry 8dkp: Minimal PutA proline dehydrogenase domain (design #2) complexed with S-(-)-tetrahydro-2-furoic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2022-07-05
Authors: Tanner, J.J., Bogner, A.N.
PDB entry 8dkq: Minimal PutA proline dehydrogenase domain (design #2) complexed with 2-(Furan-2-yl)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti SM11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-07-05
Authors: Tanner, J.J., Bogner, A.N.
PDB entry 8dkr: Pseudomonas-phage E217 TerL nuclease domain
Classification: HYDROLASE
Source organism: Pseudomonas phage vB_PaeM_E217
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-07-06
Authors: Cingolani, G., Lokareddy, R., Hou, D.
PDB entry 8dks: IRAK4 IN COMPLEX WITH COMPOUND #3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-07-06
Authors: Chen, Y., Lin, N.
PDB entry 8dkt: Crystal Structure of Septin1 - Septin2 heterocomplex from Drosophila melanogaster
Classification: CELL CYCLE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-07-06
Authors: de Freitas, A.F., Leonardo, D.A., Cavini, I.A., Pereira, H.M., Garratt, R.C.
PDB entry 8dku: CryoEM structure of the A. aeolicus WzmWzt transporter bound to the native O antigen
Classification: TRANSLOCASE
Source organism: Aquifex aeolicus VF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-06
Authors: Spellmon, N., Muszynski, A., Vlach, J., Zimmer, J.
PDB entry 8dkv: PPARg bound to JTP-426467 and Co-R peptide
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2022-07-06
Authors: Larsen, N.A.
PDB entry 8dkw: Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH5.0
Classification: MEMBRANE PROTEIN/Transport protein
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-07-06
Authors: Schmiege, P., Li, X.
PDB entry 8dkx: Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH7.5
Classification: MEMBRANE PROTEIN/Transport protein
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-06
Authors: Schmiege, P., Li, X.
PDB entry 8dky: Crystal structure of the Aquifex aeolicus Wzt Carbohydrate Binding Domain bound to 3-O-methyl-D-mannose
Classification: SUGAR BINDING PROTEIN
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2022-07-06
Authors: Spellmon, N., Zimmer, J.
PDB entry 8dkz: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-07-06
Authors: Khan, M.B., Lu, J., Young, H.S., Lemieux, M.J.
PDB entry 8dl0: CryoEM structure of the nucleotide-free and open channel A.aeolicus WzmWzt transporter
Classification: TRANSLOCASE
Source organism: Aquifex aeolicus VF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-07-06
Authors: Spellmon, N., Zimmer, J.
PDB entry 8dl1: BoGH13ASus-E523Q from Bacteroides ovatus bound to maltoheptaose
Classification: HYDROLASE
Source organism: Bacteroides ovatus ATCC 8483
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-07-06
Authors: Brown, H.A., DeVeaux, A.L., Koropatkin, N.M.
PDB entry 8dl2: BoGH13ASus from Bacteroides ovatus bound to acarbose
Classification: HYDROLASE
Source organism: Bacteroides ovatus ATCC 8483
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-07-06
Authors: Brown, H.A., DeVeaux, A.L., Koropatkin, N.M.
PDB entry 8dl3: Crystal structure of the human queuine salvage enzyme DUF2419, complexed with queuine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-07-06
Authors: Hung, S.-H., Swairjo, M.A.
PDB entry 8dl4: S. CEREVISIAE CYP51 COMPLEXED WITH Courmarin-containing INHIBITOR
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHBITOR
Source organism: Saccharomyces cerevisiae YJM789
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-07-06
Authors: Ruma, Y.N., Keniya, M.V., Tyndall, J.D., Monk, B.C.
PDB entry 8dl5: Crystal structure of PLP-dependent Mannich cyclase LolT
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penicillium expansum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-06
Authors: Gao, J., Hai, Y.
PDB entry 8dl6: Cryo-EM structure of human ferroportin/slc40 bound to Ca2+ in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-07
Authors: Shen, J., Wilbon, A.S., Pan, Y., Zhou, M.
PDB entry 8dl7: Cryo-EM structure of human ferroportin/slc40 bound to minihepcidin PR73 in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-07-07
Authors: Shen, J., Wilbon, A.S., Pan, Y., Zhou, M.
PDB entry 8dl8: Cryo-EM structure of human ferroportin/slc40 bound to Co2+ in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-07
Authors: Shen, J., Wilbon, A.S., Pan, Y., Zhou, M.
PDB entry 8dl9: Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound Z199538122
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-07
Authors: Kovalevsky, A.Y., Coates, L., Kneller, D.W.
PDB entry 8dla: ClpP2 from Chlamydia trachomatis bound by MAS1-12
Classification: HYDROLASE/INHIBITOR
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2022-07-07
Authors: Azadmanesh, J., Struble, L.R., Seleem, M.A., Ouellette, S., Conda-Sheridan, M., Borgstahl, G.E.O.
PDB entry 8dlb: Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound Z2799209083
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-07
Authors: Kovalevsky, A.Y., Coates, L., Kneller, D.W.
PDB entry 8dlc: Crystal structure of chalcone-isomerase like protein from Vitis vinifera (VvCHIL)
Classification: SIGNALING PROTEIN
Source organism: Vitis vinifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-07
Authors: Wolf Saxon, E., Moorman, C., Castro, A., Ruiz, A., Mallari, J.P., Burke, J.R.
PDB entry 8dld: Crystal structure of chalcone-isomerase like protein from Physcomitrella patens (PpCHIL-A)
Classification: SIGNALING PROTEIN
Source organism: Physcomitrium patens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-07-07
Authors: Wolf Saxon, E., Moorman, C., Castro, A., Ruiz, A., Mallari, J.P., Burke, J.R.
PDB entry 8dle: Crosslinked Crystal Structure of the 8-amino-7-oxonanoate synthase, BioF, and Benzene Sulfonyl Fluoride-crypto Acyl Carrier Protein, BSF-ACP
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-07-07
Authors: Chen, A., Davis, T.D., Louie, G.V., Bowman, M.E., Noel, J.P., Burkart, M.D.
PDB entry 8dlf: EBNA1 DNA binding domain (DBD) (458-617)+2 repeats of family repeat (FR) region
Classification: VIRAL PROTEIN/DNA
Source organism: Human herpesvirus 4 strain B95-8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2022-07-07
Authors: Mei, Y., Lieberman, P.M., Murakami, K.
PDB entry 8dli: Cryo-EM structure of SARS-CoV-2 Alpha (B.1.1.7) spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlj: Cryo-EM structure of SARS-CoV-2 Alpha (B.1.1.7) spike protein in complex with human ACE2
Classification: Viral Protein/Hydrolase
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlk: Cryo-EM structure of SARS-CoV-2 Alpha (B.1.1.7) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: Viral Protein/Hydrolase
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dll: Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlm: Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with human ACE2
Classification: viral protein/Hydrolase
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dln: Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: Viral Protein/Hydrolase
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlo: Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlp: Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlq: Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlr: Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with Fab 4-8 (focused refinement of NTD and 4-8)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dls: Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with Fab 4A8 (focused refinement of NTD and 4A8)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlt: Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlu: Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein in complex with human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlv: Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlw: Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein in complex with Fab S2M11
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.16 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlx: Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein in complex with VH ab6
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dly: Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein in complex with VH ab6 (focused refinement of NTD and VH ab6)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dlz: Cryo-EM structure of SARS-CoV-2 D614G spike protein in complex with VH ab6
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dm0: Cryo-EM structure of SARS-CoV-2 D614G spike protein in complex with VH ab6 (focused refinement of NTD and VH ab6)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2022-07-08
Authors: Zhu, X., Mannar, D., Saville, J.W., Srivastava, S.S., Berezuk, A.M., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 8dm1: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dm2: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein (focused refinement of NTD)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dm3: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dm4: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8 (focused refinement of NTD and 4A8)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dm5: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dm6: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dm7: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with mouse ACE2
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dm8: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with mouse ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dm9: Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dma: Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2022-07-08
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.
PDB entry 8dmb: Structure of Desulfovirgula thermocuniculi IsrB (DtIsrB) in complex with omega RNA and target DNA
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Desulfovirgula thermocuniculi; Saccharomyces cerevisiae S288C; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-08
Authors: Seiichi, H., Kappel, K., Zhang, F.
PDB entry 8dmd: Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound ZZ4461624291
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-08
Authors: Kovalevsky, A., Coates, L., Kneller, D.W.
PDB entry 8dme: CYP102A1 in Open Conformation
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2022-07-08
Authors: Su, M., Xu, H.
PDB entry 8dmf: Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2
Classification: TRANSLATION
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-07-08
Authors: Wang, C., Han, W., Groisman, E.A., Liu, J.
PDB entry 8dmg: CYP102A1 in Closed Conformation
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2022-07-08
Authors: Su, M., Xu, H.
PDB entry 8dmh: Lymphocytic choriomeningitis virus glycoprotein in complex with neutralizing antibody M28
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lymphocytic choriomeningitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2022-07-08
Authors: Moon-Walker, A., Hastie, K.M., Zyla, D.S., Saphire, E.O.
PDB entry 8dmi: Lymphocytic choriomeningitis virus glycoprotein
Classification: VIRAL PROTEIN
Source organism: Lymphocytic choriomeningitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2022-07-08
Authors: Moon-Walker, A., Hastie, K.M., Zyla, D.S., Saphire, E.O.
PDB entry 8dmj: Postfusion Nipah virus fusion protein in complex with Fab 1H1
Classification: VIRAL PROTEIN/Immune System
Source organism: Mus musculus; Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-08
Authors: Byrne, P.O., Blade, E.G., McLellan, J.S.
PDB entry 8dmk: Cryo-EM reveals the molecular basis of laminin polymerization and LN-lamininopathies
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-08
Authors: Kulczyk, A.W.
PDB entry 8dml: Vibrio parahaemolyticus VtrA/VtrC complex bound to the bile salt chenodeoxycholate
Classification: SIGNALING PROTEIN
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2022-07-08
Authors: Tomchick, D.R., Orth, K., Zou, A.J.
PDB entry 8dmm: Structure of the vanadate-trapped MsbA bound to KDL
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2022-07-08
Authors: Liu, C., Lyu, J., Laganowsky, A.D., Zhao, M.
PDB entry 8dmn: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-07-08
Authors: Lu, J., Khan, M.B., Young, H.S., Lemieux, M.J.
PDB entry 8dmo: Structure of open, inward-facing MsbA from E. coli
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-07-08
Authors: Liu, C., Lyu, J., Laganowsky, A.D., Zhao, M.
PDB entry 8dmp: Crystal structure of Legionella pneumophila macrodomain effector MavL
Classification: ANTITOXIN
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-07-08
Authors: Zhang, Z., Das, C.
PDB entry 8dmq: Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester
Classification: ANTITOXIN
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.195 Å
Deposited: 2022-07-08
Authors: Zhang, Z., Das, C.
PDB entry 8dmr: Legionella macrodomain effector MavL R370A in complex with ADP-ribose
Classification: ANTITOXIN
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2022-07-08
Authors: Zhang, Z., Das, C.
PDB entry 8dms: Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose
Classification: ANTITOXIN
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-07-08
Authors: Zhang, Z., Das, C.
PDB entry 8dmt: Crystal structure of macrodomain CG2909 from Drosophila melanogaster in complex with ADP-ribose
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2022-07-08
Authors: Zhang, Z., Das, C.
PDB entry 8dmu: Crystal structure of macrodomain CG3568 from Drosophila melanogaster in complex with ADP-ribose
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-08
Authors: Zhang, Z., Das, C.
PDB entry 8dmx: Cryo-EM structure of skeletal muscle alpha-actin
Classification: STRUCTURAL PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2022-07-08
Authors: Arora, A.S., Huang, H.L., Heissler, S.M., Chinthalapudi, K.
PDB entry 8dmy: Cryo-EM structure of cardiac muscle alpha-actin
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2022-07-09
Authors: Arora, A.S., Huang, H.L., Heissler, S.M., Chinthalapudi, K.
PDB entry 8dn0: E.coli DsbA in complex with N-(2-fluorophenyl)-5-methylisoxazole-3-carboxamide
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-07-10
Authors: Wang, G., Heras, B.
PDB entry 8dn1: Q108K:K40L:T51C:T53A:R58L:Q38F:Q4F mutant of hCRBPII bound to synthetic fluorophore CM1V at pH 7.2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2022-07-10
Authors: Bingham, C.R., Borhan, B., Geiger, J.H.
PDB entry 8dn2: Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, glycine-bound state 2(expanded open)
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-07-10
Authors: Liu, X., Wang, W.
PDB entry 8dn3: Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, apo state
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2022-07-10
Authors: Liu, X., Wang, W.
PDB entry 8dn4: Cryo-EM structure of human Glycine Receptor alpha-1 beta heteromer, glycine-bound state3(desensitized state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-07-10
Authors: Liu, X., Wang, W.
PDB entry 8dn5: Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, glycine-bound state1(open state)
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2022-07-10
Authors: Liu, X., Wang, W.
PDB entry 8dn6: The crystal structure of the Arabidopsis thaliana Toc75 POTRA domains in complex with fab tc2
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-07-10
Authors: Srinivasan, K., Noinaj, N.
PDB entry 8dn7: The crystal structure of the Pisum sativum Toc75 POTRA domains in complex with fab ax9
Classification: Membrane Protein/Immune System
Source organism: Pisum sativum; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-10
Authors: Srinivasan, K., Noinaj, N.
PDB entry 8dn8: CryoEM structure of the A. aeolicus WzmWzt transporter bound to 3-O-methyl-D-mannose
Classification: TRANSLOCASE
Source organism: Aquifex aeolicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-10
Authors: Spellmon, N., Zimmer, J.
PDB entry 8dn9: Acidipropionibacterium acidipropionici encapsulin in a closed state at pH 7.5
Classification: VIRUS LIKE PARTICLE
Source organism: Acidipropionibacterium acidipropionici ATCC 4875
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-11
Authors: Jones, J.A., Andreas, M.P., Giessen, T.W.
PDB entry 8dna: Acidipropionibacterium acidipropionici encapsulin in a closed state at pH 3.0
Classification: VIRUS LIKE PARTICLE
Source organism: Acidipropionibacterium acidipropionici ATCC 4875
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-07-11
Authors: Jones, J.A., Andreas, M.P., Giessen, T.W.
PDB entry 8dnc: CryoEM structure of the A. aeolicus WzmWzt transporter bound to the native O antigen and ADP
Classification: TRANSLOCASE
Source organism: Aquifex aeolicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-11
Authors: Spellmon, N., Muszynski, A., Vlach, J., Zimmer, J.
PDB entry 8dnd: Crystal structure of Bothrops pirajai Piratoxin-I (PrTX-I) and synthetic inhibitor Varespladib (LY315920)
Classification: TOXIN/ANTITOXIN
Source organism: Bothrops pirajai
Experimental method: X-RAY DIFFRACTION
Resolution: 2.018 Å
Deposited: 2022-07-11
Authors: Salvador, G.H.M., Fontes, M.R.M.
PDB entry 8dne: CryoEM structure of the A.aeolicus WzmWzt transporter bound to ATP
Classification: TRANSLOCASE
Source organism: Aquifex aeolicus VF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-07-11
Authors: Spellmon, N., Zimmer, J.
PDB entry 8dnf: Cryo-EM structure of nonmuscle gamma-actin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2022-07-11
Authors: Arora, A.S., Huang, H.L., Heissler, S.M., Chinthalapudi, K.
PDB entry 8dng: Prefusion-stabilized Nipah virus fusion protein
Classification: VIRAL PROTEIN
Source organism: Nipah henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-11
Authors: Byrne, P.O., Blade, E.G., McLellan, J.S.
PDB entry 8dnh: Cryo-EM structure of nonmuscle beta-actin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2022-07-11
Authors: Arora, A.S., Huang, H.L., Heissler, S.M., Chinthalapudi, K.
PDB entry 8dni: Crystal structure of human KRAS G12C covalently bound with Araxes WO2020/028706A1 compound I-1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-11
Authors: Mohr, C.
PDB entry 8dnj: Crystal structure of human KRAS G12C covalently bound with AstraZeneca WO2020/178282A1 compound 76
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-07-11
Authors: Mohr, C.
PDB entry 8dnk: Crystal structure of human KRAS G12C covalently bound with Taiho WO2020/085493A1 compound 6
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2022-07-11
Authors: Mohr, C.
PDB entry 8dnl: Acidipropionibacterium acidipropionici encapsulin in an open state at pH 7.5
Classification: VIRUS LIKE PARTICLE
Source organism: Acidipropionibacterium acidipropionici ATCC 4875
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2022-07-11
Authors: Jones, J.A., Andreas, M.P., Giessen, T.W.
PDB entry 8dnm: Human Brain Dihydropyrimidinase-related protein 2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2022-07-11
Authors: Tringides, M.L.
PDB entry 8dnn: Crystal structure of neutralizing antibody 80 in complex with SARS-CoV-2 receptor binding domain
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2022-07-11
Authors: Muthuraman, K., Kucharska, I., Ivanochko, D., Julien, J.P.
PDB entry 8dno: Human Brain Aldehyde Dehydrogenase 1 family, member A1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-11
Authors: Tringides, M.L.
PDB entry 8dnp: Human Brain Ferritin Heavy Chain
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2022-07-11
Authors: Tringides, M.L.
PDB entry 8dnq: BRD2-BD1 in complex with cyclic peptide 2.2B
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-07-11
Authors: Patel, K., Franck, C., Mackay, J.P.
PDB entry 8dnr: Prefusion-stabilized Hendra virus fusion protein
Classification: VIRAL PROTEIN
Source organism: Hendra henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-11
Authors: Byrne, P.O., Blade, E.G., McLellan, J.S.
PDB entry 8dns: Human Brain Glyceraldehyde 3-phosphate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2022-07-11
Authors: Tringides, M.L.
PDB entry 8dnt: SARS-CoV-2 specific T cell receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2022-07-11
Authors: Gallagher, D.T., Wu, D., Gowthaman, R., Pierce, B.G., Mariuzza, R.A., Weng, N.P.
PDB entry 8dnu: Human Brain Glutamine Synthetase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2022-07-11
Authors: Tringides, M.L.
PDB entry 8dnv: Cryo-EM structure of the human Sec61 complex in a partially-open apo state (Class 1)
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.
PDB entry 8dnw: Cryo-EM structure of the human Sec61 complex in a partially-open apo state (Class 2)
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.
PDB entry 8dnx: Cryo-EM structure of the human Sec61 complex inhibited by cotransin
Classification: PROTEIN TRANSPORT/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2022-07-12
Authors: Park, E., Itskanov, S.