LiteFold/PDB huggingface dataset:
PDB entry 8d00: Structure of the Arabidopsis thaliana SPIRAL2 TOG domain
Classification: STRUCTURAL PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-05-25
Authors: Slep, K.C., Bolhuis, D.L.
PDB entry 8d01: The domain-swaped dimer of the HIV-1 CD4bs targeting antibody 21N13
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2022-05-25
Authors: Xian, Y., Wilson, I.A.
PDB entry 8d02: Crystal Structure of Bacillus anthracis BxpB
Classification: STRUCTURAL PROTEIN
Source organism: Bacillus anthracis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-05-25
Authors: Chattopadhyay, D., Turnbough, C.L.
PDB entry 8d03: Hallucinated C2 protein assembly HALC2_068
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-05-25
Authors: Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.
PDB entry 8d04: Hallucinated C2 protein assembly HALC2_062
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2022-05-25
Authors: Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.
PDB entry 8d05: Hallucinated C2 protein assembly HALC2_065
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2022-05-25
Authors: Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.
PDB entry 8d06: Hallucinated C3 protein assembly HALC3_104
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-05-25
Authors: Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.
PDB entry 8d07: Hallucinated C3 protein assembly HALC3_109
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-05-25
Authors: Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.
PDB entry 8d08: Hallucinated C4 protein assembly HALC4_135
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-05-25
Authors: Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.
PDB entry 8d09: Hallucinated C4 protein assembly HALC4_136
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-05-25
Authors: Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.
PDB entry 8d0a: Crystal structure of human USP30 in complex with a covalent inhibitor 829 and a Fab
Classification: HYDROLASE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2022-05-25
Authors: Song, X., Butler, J., Li, C., Zhang, K., Zhang, D., Hao, Y.
PDB entry 8d0b: Human CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2022-05-26
Authors: He, Q., Lin, X., Chavez, B.L., Agrawal, S., Lusk, B.L., Lim, C.
PDB entry 8d0c: Human SARM1 TIR domain bound to NB-3-ADPR
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Mathur, P.
PDB entry 8d0d: Human SARM1 TIR domain bound to an NB-7-ADPR adduct
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Mathur, P.
PDB entry 8d0e: Human SARM1 TIR domain bound to NB-7
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Mathur, P.
PDB entry 8d0f: Human SARM1 TIR domain bound to NB-2-ADPR
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Mathur, P.
PDB entry 8d0g: Human SARM1 TIR domain bound to NB-3-ADPRP
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Mathur, P.
PDB entry 8d0h: Human SARM1 TIR domain bound to NB-3-GDPR
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Mathur, P.
PDB entry 8d0i: Human SARM1 bound to an NB-3 eADPR adduct
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Mathur, P.
PDB entry 8d0j: Apo Human SARM1 TIR domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Mathur, P.
PDB entry 8d0k: Human CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template - PRIM2C advanced PIC
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.27 Å
Deposited: 2022-05-26
Authors: He, Q., Lin, X., Chavez, B.L., Agrawal, S., Lusk, B.L., Lim, C.
PDB entry 8d0m: Human CD38 ectodomain bound to a 78c-ADPR adduct
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-05-26
Authors: Bratkowski, M.A., Gu, W.
PDB entry 8d0o: Human alpha1,3-fucosyltransferase FUT9, heavy atom derivative
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-05-26
Authors: Kadirvelraj, R., Wood, Z.A.
PDB entry 8d0p: Human FUT9, unliganded
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.09 Å
Deposited: 2022-05-26
Authors: Kadirvelraj, R., Wood, Z.A.
PDB entry 8d0q: Human FUT9 bound to GDP-CF3-Fucose and H-Type 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-05-26
Authors: Kadirvelraj, R., Wood, Z.A.
PDB entry 8d0r: Human FUT9 bound to GDP and H-Type 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-05-26
Authors: Kadirvelraj, R., Wood, Z.A.
PDB entry 8d0s: Human FUT9 bound to GDP and LNnT
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2022-05-26
Authors: Kadirvelraj, R., Wood, Z.A.
PDB entry 8d0u: Human FUT9 bound to GDP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2022-05-26
Authors: Kadirvelraj, R., Wood, Z.A.
PDB entry 8d0v: Human LanCL1 C264A mutant bound to GSH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-05-26
Authors: Ongpipattanakul, C., Nair, S.K.
PDB entry 8d0w: Human FUT9 bound to H-Type 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.332 Å
Deposited: 2022-05-26
Authors: Kadirvelraj, R., Wood, Z.A.
PDB entry 8d0x: Human FUT9 bound to LNnT
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2022-05-26
Authors: Kadirvelraj, R., Wood, Z.A.
PDB entry 8d0y: Crystal Structure of HIV-1 BG505 SOSIPv8 Trimer in Complex with CD4bs targeting antibody 21N13 and interface targeting antibody 35O22 at 4.7 Angstrom
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 4.7 Å
Deposited: 2022-05-26
Authors: Xian, Y., Wilson, I.A.
PDB entry 8d0z: S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-05-26
Authors: Ozorowski, G., Torres, J.L., Ward, A.B.
PDB entry 8d10: Crystal Structure of EcDsbA in a complex with (1-methyl-1H-pyrazol-5-yl)methanamine
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-05-26
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8d11: Crystal Structure of EcDsbA in a complex with 1-methyl-1H-pyrazol-5-amine
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-05-26
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8d12: Crystal Structure of EcDsbA in a complex with 1-methyl-1H-pyrazol-4-amine
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-05-26
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8d13: Helical ADP-F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2022-05-26
Authors: Reynolds, M.J., Alushin, G.M.
PDB entry 8d14: Helical ADP-Pi-F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2022-05-26
Authors: Reynolds, M.J., Alushin, G.M.
PDB entry 8d15: Bent ADP-F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2022-05-26
Authors: Reynolds, M.J., Alushin, G.M.
PDB entry 8d16: Bent ADP-Pi-F-actin
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2022-05-26
Authors: Reynolds, M.J., Alushin, G.M.
PDB entry 8d17: Straight ADP-F-actin 1
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2022-05-26
Authors: Reynolds, M.J., Alushin, G.M.
PDB entry 8d18: Straight ADP-F-actin 2
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2022-05-26
Authors: Reynolds, M.J., Alushin, G.M.
PDB entry 8d19: Human LanCL1 bound to GSH
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-05-26
Authors: Ongpipattanakul, C., Nair, S.K.
PDB entry 8d1b: CryoEM structure of human orphan GPCR GPR179 in complex with extracellular matrix protein pikachurin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2022-05-27
Authors: Patil, D.N., Martemyanov, K.A.
PDB entry 8d1c: Crystal structure of T252E-CYP199A4 in complex with 4-(Trifluoromethoxy)benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-05-27
Authors: Lee, J.H.Z., Bruning, J.B., Bell, S.G.
PDB entry 8d1d: PROSS PETase
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2022-05-27
Authors: Vongsouthi, V., Jackson, C.J., Tan, L.
PDB entry 8d1e: hBest2 1uM Ca2+ (Ca2+-bound) closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.78 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1f: hBest2 5mM Ca2+ (Ca2+-bound) closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.82 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1g: hBest2 Ca2+-bound open state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.07 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1h: hBest2 Ca2+-unbound closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.94 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1i: hBest1 1uM Ca2+ (Ca2+-bound) closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.82 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1j: hBest1 5mM Ca2+ (Ca2+-bound) closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.05 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1k: hBest1 Ca2+-bound partially open neck state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1l: hBest1 Ca2+-bound partially open aperture state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.12 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1m: hBest1 Ca2+-unbound closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1n: bBest2_345 Ca2+-bound open state
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.93 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1o: hBest1_345 Ca2+-bound open state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2022-05-27
Authors: Owji, A.P., Kittredge, A., Hendrickson, W.A., Tingting, Y.
PDB entry 8d1p: Crystal structure of Plasmodium falciparum GRP78-NBD in complex with 7-Deaza-2'-C-methyladenosine
Classification: CHAPERONE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-05-27
Authors: Mrozek, A., Chen, Y., Antoshchenko, T., Park, H.W.
PDB entry 8d1q: Crystal structure of Plasmodium falciparum GRP78-NBD in complex with 8-Aminoadenosine
Classification: CHAPERONE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-05-27
Authors: Mrozek, A., Chen, Y., Antoshchenko, T., Park, H.W.
PDB entry 8d1r: Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT520
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-05-27
Authors: Pang, A.H., Punetha, A., Garneau-Tsodikova, S., Tsodikov, O.V.
PDB entry 8d1s: Crystal structure of Plasmodium falciparum GRP78 in complex with Toyocamycin
Classification: CHAPERONE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-05-27
Authors: Mrozek, A., Chen, Y., Antoshchenko, T., Park, H.W.
PDB entry 8d1t: Crystal structure of human USP30 in complex with a covalent inhibitor 552 and a Fab
Classification: HYDROLASE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2022-05-27
Authors: Song, X., Butler, J., Li, C., Zhang, K., Zhang, D., Hao, Y.
PDB entry 8d1u: E. coli beta-ketoacyl-[acyl carrier protein] synthase III (FabH) with an acetylated cysteine and in complex with oxa(dethia)-Coenzyme A
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.302 Å
Deposited: 2022-05-27
Authors: Benjamin, A.B., Stunkard, L.M., Ling, J., Nice, J.N., Lohman, J.R.
PDB entry 8d1v: Cryo-EM structure of guide RNA and target RNA bound Cas7-11
Classification: RNA BINDING PROTEIN/RNA
Source organism: Desulfonema ishimotonii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2022-05-27
Authors: Rai, J., Goswami, H., Li, H.
PDB entry 8d1w: Crystal structure of Plasmodium falciparum GRP78 in complex with (2R,3R,4S,5R)-2-(6-amino-8-((2-chlorobenzyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol
Classification: CHAPERONE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-05-27
Authors: Mrozek, A., Chen, Y., Antoshchenko, T., Park, H.W., Smil, D., Zepeda, C.A.V.
PDB entry 8d1x: Crystal Structure of aminopeptidase A from Neisseria gonorrhoeae
Classification: HYDROLASE
Source organism: Neisseria gonorrhoeae NCCP11945
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-05-27
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8d1y: Crystal structure of Plasmodium falciparum GRP78 in complex with Trans-Zeatin Riboside
Classification: CHAPERONE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-05-27
Authors: Mrozek, A., Park, H.W.
PDB entry 8d20: Crystal structure of Plasmodium falciparum GRP78 in complex with 5'-Methylthioadenosine
Classification: CHAPERONE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-05-27
Authors: Mrozek, A., Park, H.W.
PDB entry 8d21: Cryo-EM structure of the VRC321 clinical trial, vaccine-elicited, human antibody 1B06 in complex with a stabilized NC99 HA trimer
Classification: IMMUNE SYSTEM/Viral Protein
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2022-05-27
Authors: Gorman, J., Kwong, P.D.
PDB entry 8d22: Crystal structure of Plasmodium falciparum GRP78-NBD in complex with Piclidenoson
Classification: CHAPERONE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-05-27
Authors: Mrozek, A., Park, H.W.
PDB entry 8d23: Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT529
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2022-05-27
Authors: Pang, A.H., Punetha, A., Garneau-Tsodikova, S., Tsodikov, O.V.
PDB entry 8d24: Crystal structure of Plasmodium falciparum GRP78-NBD in complex with VER155008
Classification: CHAPERONE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-05-27
Authors: Mrozek, A., Park, H.W.
PDB entry 8d25: Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT530
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-05-27
Authors: Pang, A.H., Punetha, A., Garneau-Tsodikova, S., Tsodikov, O.V.
PDB entry 8d27: Arginase Domain of Ornithine Decarboxylase/Arginase from Fusobacterium nucleatum
Classification: HYDROLASE
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-05-27
Authors: Chan, A.C., Kolesnikov, M., Murphy, M.E.
PDB entry 8d28: Crystal structure of theophylline aptamer in complex with theophylline
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2022-05-28
Authors: Menichelli, E., Spraggon, G.
PDB entry 8d29: Crystal structure of theophylline aptamer - apo form
Classification: RNA/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-05-28
Authors: Menichelli, E., Spraggon, G.
PDB entry 8d2a: Crystal structure of theophylline aptamer in complex with TAL3
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-05-28
Authors: Menichelli, E., Spraggon, G.
PDB entry 8d2b: Crystal structure of theophylline aptamer in complex with TAL2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2022-05-28
Authors: Menichelli, E., Spraggon, G.
PDB entry 8d2j: A novel insecticidal protein from ferns IPD113_Cow.
Classification: PLANT PROTEIN
Source organism: Colysis wrightii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-05-30
Authors: Maher, M.J.
PDB entry 8d2k: Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 2)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Acidothermus cellulolyticus; Acidothermus cellulolyticus 11B; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2022-05-30
Authors: Rai, J., Das, A., Li, H.
PDB entry 8d2l: Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 1)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Acidothermus cellulolyticus 11B; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Deposited: 2022-05-30
Authors: Rai, J., Das, A., Li, H.
PDB entry 8d2m: Covalent Schiff base complex of YedK C2A and abasic DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.821 Å
Deposited: 2022-05-30
Authors: Eichman, B.F., Paulin, K.A.
PDB entry 8d2n: Structure of Acidothermus cellulolyticus Cas9 ternary complex (Pre-cleavage)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Acidothermus cellulolyticus 11B; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2022-05-30
Authors: Rai, J., Das, A., Li, H.
PDB entry 8d2o: Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 2)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Acidothermus cellulolyticus 11B; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2022-05-30
Authors: Rai, J., Das, A., Li, H.
PDB entry 8d2p: Structure of Acidothermus cellulolyticus Cas9 ternary complex (Target bound)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Acidothermus cellulolyticus 11B; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2022-05-30
Authors: Rai, J., Das, A., Li, H.
PDB entry 8d2q: Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 1)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Acidothermus cellulolyticus 11B; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2022-05-30
Authors: Rai, J., Das, A., Li, H.
PDB entry 8d2s: Zebrafish MFSD2A isoform B in inward open ligand bound conformation
Classification: LIPID TRANSPORT
Source organism: Danio rerio; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-05-30
Authors: Nguyen, C., Lei, H.T., Lai, L.T.F., Gallentino, M.J., Mu, X., Matthies, D., Gonen, T.
PDB entry 8d2t: Zebrafish MFSD2A isoform B in inward open ligand-free conformation
Classification: LIPID TRANSPORT
Source organism: Danio rerio; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-05-30
Authors: Nguyen, C., Lei, H.T., Lai, L.T.F., Gallentino, M.J., Mu, X., Matthies, D., Gonen, T.
PDB entry 8d2u: Zebrafish MFSD2A isoform B in inward open ligand 1A conformation
Classification: LIPID TRANSPORT
Source organism: Danio rerio; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-05-30
Authors: Nguyen, C., Lei, H.T., Lai, L.T.F., Gallentino, M.J., Mu, X., Matthies, D., Gonen, T.
PDB entry 8d2v: Zebrafish MFSD2A isoform B in inward open ligand 1B conformation
Classification: LIPID TRANSPORT
Source organism: Danio rerio; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-05-30
Authors: Nguyen, C., Lei, H.T., Lai, L.T.F., Gallentino, M.J., Mu, X., Matthies, D., Gonen, T.
PDB entry 8d2w: Zebrafish MFSD2A isoform B in inward open ligand 2B conformation
Classification: LIPID TRANSPORT
Source organism: Danio rerio; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-05-30
Authors: Nguyen, C., Lei, H.T., Lai, L.T.F., Gallentino, M.J., Mu, X., Matthies, D., Gonen, T.
PDB entry 8d2x: Zebrafish MFSD2A isoform B in inward open ligand 3C conformation
Classification: LIPID TRANSPORT
Source organism: Danio rerio; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-05-30
Authors: Nguyen, C., Lei, H.T., Lai, L.T.F., Gallentino, M.J., Mu, X., Matthies, D., Gonen, T.
PDB entry 8d2y: Y430F mutant of D-ornithine/D-lysine decarboxylase
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2022-05-31
Authors: Phillips, R.S., Nguyen Hoang, K.N.
PDB entry 8d2z: Crystal Structure of a Metallo-beta-lactamase superfamily protein from Burkholderia cenocepacia
Classification: HYDROLASE
Source organism: Burkholderia cenocepacia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-05-31
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8d30: Crystal structure of the human COPB2 WD-domains
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-05-31
Authors: Zeng, H., Dong, A., Hutchinson, A., Seitova, A., Loppnau, P., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 8d31: [AG/TC] Self-Assembled 3D DNA Cubic Tensegrity Triangle with 24 bp Arm Length
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.45 Å
Deposited: 2022-05-31
Authors: Lu, B., Vecchioni, S., Ohayon, Y.P., Seeman, N.C., Mao, C., Sha, R.
PDB entry 8d32: Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase bound to 5-deoxyadenosylrhodibalamin and PPPi
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-05-31
Authors: Mascarenhas, R.N., Ruetz, M., Koutmos, M., Banerjee, R.
PDB entry 8d33: Human mitochondrial DNA polymerase gamma ternary complex with GC basepair
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2022-05-31
Authors: Park, J., Yin, Y.W.
PDB entry 8d34: Crystal Structure of SARS CoV-2 NSP15 Endroribonuclease H250A
Classification: RNA BINDING PROTEIN,VIRAL PROTEIN,LYASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2022-05-31
Authors: Farraj, R.A., Edwards, R.A., Glover, J.N.M.
PDB entry 8d36: Crystal structure of SARS-CoV-2 fusion peptide in complex with neutralizing antibody COV44-62
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-05-31
Authors: Yuan, M., Lee, C.C.D., Wilson, I.A.
PDB entry 8d37: Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in replication conformer
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2022-05-31
Authors: Park, J., Yin, Y.W.
PDB entry 8d38: Structure of a purine nucleoside phosphorylase from Geobacillus stearothermophilus
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-05-31
Authors: Given, F., Johnston, J., Crittenden, D., Moran, F., Johns, A.
PDB entry 8d39: The crystal structure of WT CYP199A4 bound to 4-benzoylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.268 Å
Deposited: 2022-06-01
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8d3a: Crystal Structure of DH475 Fab in complex with Man9
Classification: IMMUNE SYSTEM/ANTIGEN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-06-01
Authors: Finkelstein, M., Fera, D.
PDB entry 8d3b: Hexameric HIV-1 (M-group) Q50Y/R120 mutant
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-06-01
Authors: Jacques, D.A., Govasli, M.L., Pinotsis, N., James, L.C.
PDB entry 8d3c: VWF tubule derived from monomeric D1-A1
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-01
Authors: Anderson, J.R., Li, J., Springer, T.A., Brown, A.
PDB entry 8d3d: VWF tubule derived from dimeric D1-A1
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-01
Authors: Anderson, J.R., Li, J., Springer, T.A., Brown, A.
PDB entry 8d3e: Crystal structure of human Apoptosis-Inducing Factor (AIF) W196A mutant complexed with 6-fluoroquinolin-4-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-06-01
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8d3f: Crystal structure of human STAT1 in complex with the repeat region from Toxoplasma protein TgIST
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Toxoplasma gondii GT1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2022-06-01
Authors: Huang, Z., Liu, H., Nix, J.C., Amarasinghe, G.K., Sibley, L.D.
PDB entry 8d3g: Crystal structure of human Apoptosis-Inducing Factor (AIF) W196A mutant complexed with 6-chloroquinolin-4-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2022-06-01
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8d3h: Crystal structure of human Apoptosis-Inducing Factor (AIF) W196A mutant complexed with 7-chloroquinolin-4-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2022-06-01
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8d3i: Crystal structure of human Apoptosis-Inducing Factor (AIF) W196A mutant complexed with quinolin-4-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-06-01
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8d3j: Crystal structure of human Apoptosis-Inducing Factor (AIF) complexed with 6-fluoro-2-methylquinolin-4-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-06-01
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8d3k: Crystal structure of human Apoptosis-Inducing Factor (AIF) complexed with 8-fluoro-2-methylquinolin-4-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-01
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8d3l: Type I-C Cas4-Cas1-Cas2 complex bound to a PAM/PAM prespacer
Classification: HYDROLASE/DNA
Source organism: Alkalihalobacillus halodurans C-125; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2022-06-01
Authors: Dhingra, Y., Suresh, S.K., Juneja, P., Sashital, D.G.
PDB entry 8d3m: Type I-C Cas4-Cas1-Cas2 complex bound to a PAM/Processed prespacer
Classification: HYDROLASE/DNA
Source organism: Alkalihalobacillus halodurans C-125; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2022-06-01
Authors: Dhingra, Y., Suresh, S.K., Juneja, P., Sashital, D.G.
PDB entry 8d3n: Crystal structure of human Apoptosis-Inducing Factor (AIF) complexed with 7-chloroquinolin-4-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-06-01
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8d3o: Crystal structure of human Apoptosis-Inducing Factor (AIF) complexed with 8-methoxyquinolin-4-amine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-06-01
Authors: Brosey, C.A., Tainer, J.A.
PDB entry 8d3p: Type I-C Cas4-Cas1-Cas2 complex bound to half-site integration intermediate (HSI)
Classification: HYDROLASE/DNA
Source organism: Alkalihalobacillus halodurans C-125; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.26 Å
Deposited: 2022-06-01
Authors: Dhingra, Y., Suresh, S.K., Juneja, P., Sashital, D.G.
PDB entry 8d3q: Type I-C Cas4-Cas1-Cas2 complex bound to a PAM/NoPAM prespacer
Classification: HYDROLASE/DNA
Source organism: Alkalihalobacillus halodurans C-125; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-06-01
Authors: Dhingra, Y., Suresh, S.K., Juneja, P., Sashital, D.G.
PDB entry 8d3r: Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in intermediate conformer
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-06-01
Authors: Park, J., Yin, Y.W.
PDB entry 8d3s: HIV-1 Integrase Catalytic Core Domain F185H Mutant Complexed with BKC-110
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-06-01
Authors: Dinh, T., Kvaratskhelia, M.
PDB entry 8d3t: Crystal structure of GalS1 from Populus trichocarpas
Classification: TRANSFERASE
Source organism: Populus trichocarpa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2022-06-01
Authors: Pereira, J.H., Prabhakar, P.K., Urbanowicz, B.R., Adams, P.D.
PDB entry 8d3u: Human alpha3 Na+/K+-ATPase in its Na+-occluded state
Classification: TRANSLOCASE/TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-06-01
Authors: Nguyen, P.T., Bai, X.
PDB entry 8d3v: Human alpha3 Na+/K+-ATPase in its cytoplasmic side-open state
Classification: TRANSLOCASE/TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-01
Authors: Nguyen, P.T., Bai, X.
PDB entry 8d3w: Human alpha3 Na+/K+-ATPase in its AMPPCP-bound cytoplasmic side-open state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-06-01
Authors: Nguyen, P.T., Bai, X.
PDB entry 8d3x: Human alpha3 Na+/K+-ATPase in its K+-occluded state
Classification: TRANSLOCASE/TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-06-01
Authors: Nguyen, P.T., Bai, X.
PDB entry 8d3y: Human alpha3 Na+/K+-ATPase in its exoplasmic side-open state
Classification: TRANSLOCASE/TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-06-01
Authors: Nguyen, P.T., Bai, X.
PDB entry 8d3z: Crystal structure of GalS1 in complex with Manganese from Populus trichocarpas
Classification: TRANSFERASE
Source organism: Populus trichocarpa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2022-06-01
Authors: Pereira, J.H., Prabhakar, P.K., Urbanowicz, B.R., Adams, P.D.
PDB entry 8d40: Crystal structure of human CELSR1 EC1-4
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.554 Å
Deposited: 2022-06-01
Authors: Tamilselvan, E., Sotomayor, M.
PDB entry 8d41: Crystal structure of the human COPB2 WD-domain in complex with OICR-6254
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-01
Authors: Zeng, H., Saraon, P., Dong, A., Hutchinson, A., Seitova, A., Loppnau, P., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 8d42: Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (composite)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2022-06-01
Authors: Park, J., Yin, Y.W.
PDB entry 8d43: Cryo-EM structure of human Kidney Glucosidase II
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2022-06-01
Authors: Lyu, M., Yu, E.W.
PDB entry 8d44: Cryo-electron microscopy structure of human kidney Fructose-bisphosphate aldolase B
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-06-01
Authors: Lyu, M., Yu, E.W.
PDB entry 8d45: Cryo-EM structure of human Kidney Betaine-Homocysteine Methyltransferase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-06-01
Authors: Lyu, M., Yu, E.W.
PDB entry 8d46: Cryo-electron microscopy structure of human kidney Aldehyde Dehydrogenase 1A1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-06-01
Authors: Lyu, M., Yu, E.W.
PDB entry 8d47: fp.006 Fab in complex with SARS-CoV-2 Fusion Peptide
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-01
Authors: Abernathy, M.E., Barnes, C.O.
PDB entry 8d48: sd1.040 Fab in complex with SARS-CoV-2 Spike 2P glycoprotein
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-06-01
Authors: Abernathy, M.E., Barnes, C.O.
PDB entry 8d49: Structure of Cas12a2 binary complex
Classification: DNA Binding Protein/RNA
Source organism: Sulfuricurvum sp. PC08-66; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-01
Authors: Bravo, J.P.K., Taylor, D.W.
PDB entry 8d4a: Cas12a2 quaternary complex
Classification: DNA Binding Protein/RNA/DNA
Source organism: Sulfuricurvum sp. PC08-66; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2022-06-01
Authors: Bravo, J.P.K., Taylor, D.W.
PDB entry 8d4b: Structure of Cas12a2 ternary complex
Classification: DNA Binding Protein/RNA
Source organism: Sulfuricurvum sp. PC08-66; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2022-06-01
Authors: Bravo, J.P.K., Taylor, D.W.
PDB entry 8d4c: beta-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated narrow membrane tubes
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.3 Å
Deposited: 2022-06-01
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d4d: gamma-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated narrow membrane tubes
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.6 Å
Deposited: 2022-06-01
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d4e: Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.2 Å
Deposited: 2022-06-01
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d4f: beta-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.8 Å
Deposited: 2022-06-01
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d4g: gamma-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.6 Å
Deposited: 2022-06-01
Authors: Hooy, R.M., Hurley, J.H.
PDB entry 8d4i: Structure of Y430F D-ornithine/D-lysine decarboxylase complex with putrescine
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2022-06-02
Authors: Phillips, R.S., Nguyen Hoang, K.N.
PDB entry 8d4j: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) H172Y Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-06-02
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8d4k: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) H172Y Mutant in Complex with Inhibitor GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-06-02
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8d4l: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) S144A Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-06-02
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8d4m: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) S144A Mutant in Complex with Inhibitor GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-06-02
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8d4n: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) E166Q Mutant
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-06-02
Authors: Lewandowski, E.M., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8d4o: Crystal Structure of the Neutrophil Serine Protease Inhibitor Eap1 from S. aureus
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-06-02
Authors: Gido, C.D., Geisbrecht, B.V.
PDB entry 8d4p: Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun10-90-3-C1
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-06-02
Authors: Butler, S.G., Chen, Y., Wang, J.
PDB entry 8d4q: Crystal Structure of Neutrophil Elastase Inhibited by Eap1 from S. aureus
Classification: HYDROLASE/INHIBITOR,PROTEIN BINDING
Source organism: Homo sapiens; Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-02
Authors: Gido, C.D., Herdendorf, T.J., Geisbrecht, B.V.
PDB entry 8d4r: Crystal Structure of Mosaic HIV-1 Envelope (MosM3.2) in Complex with antibodies PGT124 and 35O22 at 3.8 Angstrom
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.81 Å
Deposited: 2022-06-02
Authors: Xian, Y., Wilson, I.A.
PDB entry 8d4s: Crystal Structure of Cathepsin G Inhibited by Eap1 from S. aureus
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-06-02
Authors: Gido, C.D., Herdendorf, T.J., Geisbrecht, B.V.
PDB entry 8d4t: Mammalian CIV with GDN bound
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-02
Authors: Di Trani, J., Rubinstein, J.
PDB entry 8d4u: Crystal Structure of Neutrophil Elastase Inhibited by Eap2 from S. aureus
Classification: HYDROLASE/INHIBITOR,PROTEIN BINDING
Source organism: Homo sapiens; Staphylococcus aureus subsp. aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-06-02
Authors: Gido, C.D., Herdendorf, T.J., Geisbrecht, B.V.
PDB entry 8d4v: Crystal Structure of Cathepsin G Inhibited by Eap2 from S. aureus
Classification: HYDROLASE/INHIBITOR,PROTEIN BINDING
Source organism: Homo sapiens; Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-06-02
Authors: Gido, C.D., Herdendorf, T.J., Geisbrecht, B.V.
PDB entry 8d4w: Asymmetric ene-reduction of alpha,beta-unsaturated compounds using MSMEG_2850
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-06-02
Authors: Kang, S.W., Frkic, R.L., Jackson, C.
PDB entry 8d4x: Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a dimeric form
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-06-02
Authors: Wang, F., He, Q., Lin, G., Li, H.
PDB entry 8d4y: C-terminal SANT-SLIDE domain of human Chromodomain-helicase-DNA-binding protein 4 (CHD4)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-06-03
Authors: Moghaddas Sani, H., Deshpande, C.N., Panjikar, S., Patel, K., Mackay, J.P.
PDB entry 8d4z: Crystal structure of USP7 in complex with allosteric inhibitor FX1-3763
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-06-03
Authors: Bell, J.A.
PDB entry 8d50: Crystal Structure of Mosaic HIV-1 Envelope (MosM3.1) in Complex with antibodies PGT124 and 35O22 at 4.3 Angstrom
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 4.32 Å
Deposited: 2022-06-03
Authors: Xian, Y., Wilson, I.A.
PDB entry 8d51: Parathyroid hormone 1 receptor extracellular domain complexed with a peptide ligand containing beta-3-homotryptophan
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-03
Authors: Yu, Z., Kreitler, D.F., Gellman, S.H.