LiteFold/PDB huggingface dataset:
PDB entry 8g5b: Influenza A H3N2 X-31 Hemagglutinin in complex with FL-1061
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-12
Authors: Windsor, I.W., Thornlow, D., Schmidt, A.G.
PDB entry 8g5c: Structure of ACLY-D1026A-substrates, local refinement of ASH domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-02-12
Authors: Xuepeng, W., Ronen, M.
PDB entry 8g5d: Structure of ACLY-D1026A-products, local refinement of ASH domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-02-13
Authors: Wei, X., Marmorstein, R.
PDB entry 8g5e: Crystal Structure of SETDB1 Tudor domain in complex with UNC6535
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-02-13
Authors: Beldar, S., Dong, A., Brown, P.J., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 8g5f: Native GABA-A receptor from the mouse brain, ortho-alpha1-alpha3-beta2-gamma2 subtype, in complex with GABA and allopregnanolone
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-02-13
Authors: Sun, C., Gouaux, E.
PDB entry 8g5g: Native GABA-A receptor from the mouse brain, meta-alpha1-alpha3-beta2-gamma2 subtype, in complex with GABA, Zolpidem, and endogenous neurosteroid
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-02-13
Authors: Sun, C., Gouaux, E.
PDB entry 8g5h: Native GABA-A receptor from the mouse brain, ortho-alpha1-alpha3-beta2-gamma2 subtype, in complex with GABA, Zolpidem, and endogenous neurosteroid
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-02-13
Authors: Sun, C., Gouaux, E.
PDB entry 8g5i: Cryo-EM structure of the Mismatch Sensing Complex (I) of Human Mitochondrial DNA Polymerase Gamma
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-02-13
Authors: Nayak, A.R., Buchel, G., Herbine, K.H., Sarfallah, A., Sokolova, V.O., Zamudio-Ochoa, A., Temiakov, D.
PDB entry 8g5j: Cryo-EM structure of the Mismatch Uncoupling Complex (II) of Human Mitochondrial DNA Polymerase Gamma
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-02-13
Authors: Nayak, A.R., Buchel, G., Herbine, K.H., Sarfallah, A., Sokolova, V.O., Zamudio-Ochoa, A., Temiakov, D.
PDB entry 8g5k: Cryo-EM structure of the Wedge Alignment Complex (VIII) of Human Mitochondrial DNA Polymerase Gamma
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-02-13
Authors: Nayak, A.R., Buchel, G., Herbine, K.H., Sarfallah, A., Sokolova, V.O., Zamudio-Ochoa, A., Temiakov, D.
PDB entry 8g5l: Cryo-EM structure of the Primer Separation Complex (IX) of Human Mitochondrial DNA Polymerase Gamma
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-13
Authors: Nayak, A.R., Buchel, G., Herbine, K.H., Sarfallah, A., Sokolova, V.O., Zamudio-Ochoa, A., Temiakov, D.
PDB entry 8g5m: Cryo-EM structure of the Mismatch Locking Complex (III) of Human Mitochondrial DNA Polymerase Gamma
Classification: REPLICATION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2023-02-13
Authors: Nayak, A.R., Buchel, G., Herbine, K.H., Sarfallah, A., Sokolova, V.O., Zamudio-Ochoa, A., Temiakov, D.
PDB entry 8g5n: Cryo-EM structure of the Guide loop Engagement Complex (VI) of Human Mitochondrial DNA Polymerase Gamma
Classification: REPLICATION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-02-13
Authors: Nayak, A.R., Buchel, G., Herbine, K.H., Sarfallah, A., Sokolova, V.O., Zamudio-Ochoa, A., Temiakov, D.
PDB entry 8g5o: Cryo-EM structure of the Guide loop Engagement Complex (IV) of Human Mitochondrial DNA Polymerase Gamma
Classification: REPLICATION/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2023-02-13
Authors: Nayak, A.R., Buchel, G., Herbine, K.H., Sarfallah, A., Sokolova, V.O., Zamudio-Ochoa, A., Temiakov, D.
PDB entry 8g5p: Cryo-EM structure of the Guide loop Engagement Complex (V) of Human Mitochondrial DNA Polymerase Gamma
Classification: REPLICATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-02-13
Authors: Nayak, A.R., Buchel, G., Herbine, K.H., Sarfallah, A., Sokolova, V.O., Zamudio-Ochoa, A., Temiakov, D.
PDB entry 8g5s: Crystal structure of apo TnmJ
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. CB03234
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-02-14
Authors: Liu, Y.-C., Li, G., Gui, C., Shen, B.
PDB entry 8g5t: Crystal structure of apo TnmK2
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. CB03234
Experimental method: X-RAY DIFFRACTION
Resolution: 1.846 Å
Deposited: 2023-02-14
Authors: Liu, Y.-C., Gui, C., Shen, B.
PDB entry 8g5u: Crystal structure of TnmK2 complexed with TNM B
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. CB03234
Experimental method: X-RAY DIFFRACTION
Resolution: 1.804 Å
Deposited: 2023-02-14
Authors: Liu, Y.-C., Gui, C., Shen, B.
PDB entry 8g5v: Empty capsid of Hepatitis B virus
Classification: VIRUS LIKE PARTICLE
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-14
Authors: Yang, R., Cingolani, G.
PDB entry 8g5w: Structure of the Class II Fructose-1,6-Bisphophatase from Francisella tularensis complexed with native metal cofactor Mn++
Classification: HYDROLASE
Source organism: Francisella cf. tularensis subsp. novicida 3523
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-14
Authors: Abad-Zapatero, C., Selezneva, A.I.
PDB entry 8g5x: Structure of the Class II Fructose-1,6-Bisphophatase from Francisella tularensis complexed with native metal cofactor Mn++ and substrate Fructose-1,6-Bisphosphate
Classification: HYDROLASE
Source organism: Francisella cf. tularensis subsp. novicida 3523
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-14
Authors: Abad-Zapatero, C., Selezneva, A.I.
PDB entry 8g5y: mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2023-02-14
Authors: Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.
PDB entry 8g5z: mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
Classification: RIBOSOME
Source organism: Escherichia coli; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-02-14
Authors: Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.
PDB entry 8g60: mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Classification: RIBOSOME
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-02-14
Authors: Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.
PDB entry 8g61: mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Classification: RIBOSOME
Source organism: Escherichia coli; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-02-14
Authors: Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.
PDB entry 8g62: Papain-Like Protease of SARS CoV-2 in complex with remodilin NCGC 390004
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-02-14
Authors: Osipiuk, J., Tesar, C., Endres, M., Jedrzejczak, R., Luci, D., Kales, S., Simeonov, A., Rai, G., Drayman, N., Tay, S., Oakes, S., Rosner, M., Chen, B., Dulin, N., Solway, J., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8g63: Ralimetinib (LY2228820) in complex with wild type EGFR
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-14
Authors: Chitnis, S.P., Heppner, D.E.
PDB entry 8g64: Heme-bound flavodoxin FldH from Fusobacterium nucleatum
Classification: FLAVOPROTEIN
Source organism: Fusobacterium nucleatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-02-14
Authors: Chan, A.C., Wolthers, K.R., Murphy, M.E.
PDB entry 8g65: Wildtype PTP1b in complex with DES4799
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-02-14
Authors: Greisman, J.B., Willmore, L., Yeh, C.Y., Giordanetto, F., Shahamadtar, S., Nisonoff, H., Maragakis, P., Shaw, D.E.
PDB entry 8g66: Structure with SJ3149
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2023-02-14
Authors: Miller, D.J., Young, S.M., Fischer, M.
PDB entry 8g67: Wildtype PTP1b in complex with DES4884
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-02-14
Authors: Greisman, J.B., Willmore, L., Yeh, C.Y., Giordanetto, F., Shahamadtar, S., Nisonoff, H., Maragakis, P., Shaw, D.E.
PDB entry 8g68: Wildtype PTP1b in complex with DES5742
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-02-14
Authors: Greisman, J.B., Willmore, L., Yeh, C.Y., Giordanetto, F., Shahamadtar, S., Nisonoff, H., Maragakis, P., Shaw, D.E.
PDB entry 8g69: Wildtype PTP1b in complex with DES5743
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-02-14
Authors: Greisman, J.B., Willmore, L., Yeh, C.Y., Giordanetto, F., Shahamadtar, S., Nisonoff, H., Maragakis, P., Shaw, D.E.
PDB entry 8g6a: Wildtype PTP1b in complex with DES6016
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-02-14
Authors: Greisman, J.B., Willmore, L., Yeh, C.Y., Giordanetto, F., Shahamadtar, S., Nisonoff, H., Maragakis, P., Shaw, D.E.
PDB entry 8g6b: Crystal structure of PfAMA1-RON2L chimera
Classification: MEMBRANE PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-02-14
Authors: Boulanger, M.J., Ramaswamy, R.
PDB entry 8g6c: GTP Cyclohydrolase-IB with manganese
Classification: HYDROLASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2023-02-14
Authors: McWhorter, K.L., Amaya Lopez, C.Y., Davis, K.M.
PDB entry 8g6d: HSV-1 Nuclear Egress Complex (SUP; UL31-R229L)
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain 17
Experimental method: X-RAY DIFFRACTION
Resolution: 3.92 Å
Deposited: 2023-02-15
Authors: Draganova, E.B., Gonzalez Del-Pino, G.L., Heldwein, E.E.
PDB entry 8g6e: Structure of the Plasmodium falciparum 20S proteasome complexed with inhibitor TDI-8304
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum NF54
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Deposited: 2023-02-15
Authors: Hsu, H.-C., Li, H.
PDB entry 8g6f: Structure of the Plasmodium falciparum 20S proteasome beta-6 A117D mutant complexed with inhibitor WLW-vs
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Plasmodium falciparum Dd2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2023-02-15
Authors: Hsu, H.-C., Li, H.
PDB entry 8g6g: H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 5
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-02-15
Authors: Hicks, C.W., Wolberger, C., Keogh, M.
PDB entry 8g6h: H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 6
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-02-15
Authors: Hicks, C.W., Wolberger, C., Keogh, M.
PDB entry 8g6i: Coagulation factor VIII bound to a patient-derived anti-C1 domain antibody inhibitor
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å
Deposited: 2023-02-15
Authors: Childers, K.C., Davulcu, O., Haynes, R.M., Lollar, P., Doering, C.B., Coxon, C.H., Spiegel, P.C.
PDB entry 8g6j: mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-02-15
Authors: Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.
PDB entry 8g6k: HIV-1 CA lattice bound to IP6; from capsid-like particles
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-15
Authors: Highland, C.M., Dick, R.A.
PDB entry 8g6l: HIV-1 capsid lattice bound to IP6, pH 6.2
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-15
Authors: Highland, C.M., Dick, R.A.
PDB entry 8g6m: HIV-1 CA lattice bound to IP6, pH 7.4
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-15
Authors: Highland, C.M., Dick, R.A.
PDB entry 8g6n: HIV-1 capsid lattice bound to dNTPs
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-02-15
Authors: Highland, C.M., Dick, R.A.
PDB entry 8g6o: HIV-1 capsid lattice bound to IP6 and Lenacapavir
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-15
Authors: Highland, C.M., Dick, R.A.
PDB entry 8g6p: Crystal structure of Mycobacterium thermoresistibile MurE in complex with ADP and 2,6-Diaminopimelic acid
Classification: LIGASE
Source organism: Mycolicibacterium thermoresistibile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-02-15
Authors: Rossini, N.O., Silva, C.S., Dias, M.V.B.
PDB entry 8g6q: H2AK119ub-modified nucleosome ubiquitin position 1
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-02-15
Authors: Hicks, C.W., Wolberger, C., Keogh, M.
PDB entry 8g6r: Porcine epidemic diarrhea virus core polymerase complex
Classification: REPLICATION
Source organism: Porcine epidemic diarrhea virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-15
Authors: Anderson, T.K., Kirchdoerfer, R.N.
PDB entry 8g6s: H2AK119ub-modified nucleosome ubiquitin position 2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-02-15
Authors: Hicks, C.W., Wolberger, C., Keogh, M.
PDB entry 8g6t: Bromodomain of CBP liganded with inhibitor iCBP2
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-15
Authors: Schonbrunn, E., Bikowitz, M.
PDB entry 8g6u: Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer with LMHS mutations in complex with 8ANC195 and 10-1074
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-02-16
Authors: Chen, Y., Zhou, F., Huang, R., Tolbert, W., Pazgier, M.
PDB entry 8g6v: Hepatitis B virus capsid bound to importin alpha1/beta heterodimer
Classification: VIRUS LIKE PARTICLE
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-16
Authors: Yang, R., Cingolani, G.
PDB entry 8g6w: Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.02 Å
Deposited: 2023-02-16
Authors: Majumdar, C., Cate, J.H.D.
PDB entry 8g6x: Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2023-02-16
Authors: Majumdar, C., Cate, J.H.D.
PDB entry 8g6y: Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.09 Å
Deposited: 2023-02-16
Authors: Majumdar, C., Cate, J.H.D.
PDB entry 8g6z: JAK2 crystal structure in complex with Compound 13
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-02-16
Authors: Miller, S.T., Ellis, D.A.
PDB entry 8g70: SARS-CoV-2 spike/nanobody mixture complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g71: Spike/Nb2 complex with 1 RBD up
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g72: SARS-CoV-2 spike/Nb2 complex with 1 RBD up (local refinement at 5.6 A)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g73: SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 bound at 2.5 A
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g74: SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g75: SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g76: SARS-CoV-2 spike/Nb5 complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g77: SARS-CoV-2 spike/Nb6 complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g78: Local refinement of SARS-CoV-2 spike/nanobody mixture complex around NTD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g79: Local refinement of SARS-CoV-2 spike/nanobody mixture complex around RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g7a: SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 (local refinement)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g7b: SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 (local refinement)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g7c: local refinement of SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-02-16
Authors: Ye, G., Bu, F., Liu, B., Li, F.
PDB entry 8g7d: Cryo-EM structure of full length Neuroligin-2 from Mouse
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-02-16
Authors: Boyd, R., Wang, W.
PDB entry 8g7e: Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-02-16
Authors: Porta, J.C., Chauvier, A., Deb, I., Ellinger, E., Frank, A.T., Meze, K., Ohi, M.D., Walter, N.G.
PDB entry 8g7f: Crystal Structure of FosB from Bacillus cereus with Zinc and 1-hydroxypropylphosphonic acid
Classification: TRANSFERASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2023-02-16
Authors: Travis, S., Pang, A.H., Tsodikov, O.V., Garneau-Tsodikova, S., Thompson, M.K.
PDB entry 8g7g: Crystal Structure of FosB from Bacillus cereus with Zinc and (1-hydroxy-2-methylpropyl)phosphonic acid
Classification: TRANSFERASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-02-16
Authors: Travis, S., Pang, A.H., Tsodikov, O.V., Garneau-Tsodikova, S., Thompson, M.K.
PDB entry 8g7h: Crystal Structure of FosB from Bacillus cereus with Zinc and (1-hydroxypropan-2-yl)phosphonic acid
Classification: TRANSFERASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-02-16
Authors: Travis, S., Pang, A.H., Tsodikov, O.V., Garneau-Tsodikova, S., Thompson, M.K.
PDB entry 8g7i: Crystal Structure of FosB from Bacillus cereus with Zinc and Sulfate
Classification: TRANSFERASE
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-02-16
Authors: Travis, S., Pang, A.H., Tsodikov, O.V., Garneau-Tsodikova, S., Thompson, M.K.
PDB entry 8g7j: mtHsp60 V72I apo
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-16
Authors: Braxton, J.R., Shao, H., Tse, E., Gestwicki, J.E., Southworth, D.R.
PDB entry 8g7k: mtHsp60 V72I apo focus
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-02-16
Authors: Braxton, J.R., Shao, H., Tse, E., Gestwicki, J.E., Southworth, D.R.
PDB entry 8g7l: ATP-bound mtHsp60 V72I
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-02-16
Authors: Braxton, J.R., Shao, H., Tse, E., Gestwicki, J.E., Southworth, D.R.
PDB entry 8g7m: ATP-bound mtHsp60 V72I focus
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-16
Authors: Braxton, J.R., Shao, H., Tse, E., Gestwicki, J.E., Southworth, D.R.
PDB entry 8g7n: ATP- and mtHsp10-bound mtHsp60 V72I
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-02-16
Authors: Braxton, J.R., Shao, H., Tse, E., Gestwicki, J.E., Southworth, D.R.
PDB entry 8g7o: ATP- and mtHsp10-bound mtHsp60 V72I focus
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-16
Authors: Braxton, J.R., Shao, H., Tse, E., Gestwicki, J.E., Southworth, D.R.
PDB entry 8g7p: Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-02-16
Authors: Rybak, M.Y., Gagnon, M.G.
PDB entry 8g7q: Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-16
Authors: Rybak, M.Y., Gagnon, M.G.
PDB entry 8g7r: Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-02-16
Authors: Rybak, M.Y., Gagnon, M.G.
PDB entry 8g7s: Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-16
Authors: Rybak, M.Y., Gagnon, M.G.
PDB entry 8g7t: Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-end)
Classification: Transferase/Hydrolase/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-17
Authors: Wang, W., Pyle, A.M.
PDB entry 8g7u: Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-semi-closed end)
Classification: Transferase/Hydrolase/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-02-17
Authors: Wang, W., Pyle, A.M.
PDB entry 8g7v: Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-inter)
Classification: Transferase/Hydrolase/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-02-17
Authors: Wang, W., Pyle, A.M.
PDB entry 8g7w: Type I modPKS reducing region
Classification: BIOSYNTHETIC PROTEIN
Source organism: Micromonospora chalcea subsp. izumensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-02-17
Authors: McCullough, T.M., Smith, J.L.
PDB entry 8g7x: Human fatty acid synthase dehydratase domain
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.815 Å
Deposited: 2023-02-17
Authors: Akey, D.L., Konwerski, J.R., McCullough, T.M., Smith, J.L.
PDB entry 8g7y: Cryo-EM Structure of full length Neuroligin-2 from mouse with Neurexin-1 beta
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2023-02-17
Authors: Boyd, R., Wang, W.
PDB entry 8g7z: Cryo-EM structure of full length Neuroligin-2 from Mouse bound to two Neurexin-1 Beta conformation one
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-02-17
Authors: Boyd, R., Wang, W.
PDB entry 8g80: Cryo-EM structure of full length Neuroligin-2 from Mouse bound to two Neurexin-1 Beta conformation two
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-02-17
Authors: Boyd, R., Wang, W.
PDB entry 8g81: Cryo-EM structure of full length Neuroligin-2 from Mouse bound to two Neurexin-1 Beta conformation three
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-02-17
Authors: Boyd, R., Wang, W.
PDB entry 8g82: Vancomycin bound to D-Ala-D-Ser
Classification: ANTIBIOTIC
Source organism: Amycolatopsis orientalis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-02-17
Authors: Loll, P.J., Park, J.H.
PDB entry 8g83: Structure of NAD+ consuming protein Acinetobacter baumannii TIR domain
Classification: HYDROLASE
Source organism: Acinetobacter baumannii 1295743
Experimental method: X-RAY DIFFRACTION
Resolution: 3.03 Å
Deposited: 2023-02-17
Authors: Klontz, E.H., Wang, Y., Glendening, G., Carr, J., Tsibouris, T., Buddula, S., Nallar, S., Soares, A., Snyder, G.A.
PDB entry 8g84: Crystal structures of HSD17B13 complexes
Classification: OXIDOREDUCTASE
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.467 Å
Deposited: 2023-02-17
Authors: Liu, S.
PDB entry 8g85: vFP52.02 Fab in complex with BG505 DS-SOSIP Env trimer
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2023-02-17
Authors: Gorman, J., Kwong, P.D.
PDB entry 8g86: Human Oct4 bound to nucleosome with human nMatn1 sequence (focused refinement of nucleosome)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Xenopus laevis; Xenopus laevis laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-02-17
Authors: Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.
PDB entry 8g87: Human Oct4 bound to nucleosome with human nMatn1 sequence (focused refinement of Oct4 bound region)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.1 Å
Deposited: 2023-02-17
Authors: Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.
PDB entry 8g88: Human Oct4 bound to nucleosome with human nMatn1 sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-02-17
Authors: Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.
PDB entry 8g89: HSD17B13 in complex with cofactor and inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.222 Å
Deposited: 2023-02-17
Authors: Liu, S.
PDB entry 8g8a: Crystal structure of DH1317.8 Fab in complex with HIV proximal MPER peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-02-17
Authors: Janus, B.M., Astavans, A., Ofek, G.
PDB entry 8g8b: Nucleosome with human nMatn1 sequence in complex with Human Oct4
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-02-17
Authors: Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.
PDB entry 8g8c: Crystal structure of DH1322.1 Fab in complex with HIV proximal MPER peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-02-17
Authors: Niyongabo, A., Janus, B.M., Ofek, G.
PDB entry 8g8d: Crystal structure of DH1346 Fab in complex with HIV proximal MPER peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-02-17
Authors: Niyongabo, A., Janus, B.M., Ofek, G.
PDB entry 8g8e: Human Oct4 bound to nucleosome with human LIN28B sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-02-17
Authors: Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.
PDB entry 8g8f: Human IMPDH2 mutant - L245P, treated with ATP, IMP, and NAD+; extended filament segment reconstruction
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-02-17
Authors: O'Neill, A.G., Kollman, J.M.
PDB entry 8g8g: Interaction of H3 tail in LIN28B nucleosome with Oct4
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-17
Authors: Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.
PDB entry 8g8h: Crystal structure of human DNA polymerase eta incorporating ITP across dC
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-02-17
Authors: Jung, H.
PDB entry 8g8i: C3HR3_9r_shift4: Extendable repeat protein fiber
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2023-02-17
Authors: Bethel, N.P., Borst, A.J.
PDB entry 8g8j: Crystal structure of human DNA polymerase eta incorporating ITP across dT
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-02-17
Authors: Jung, H.
PDB entry 8g8k: Crystal structure of Rv1916 (residues 233-398)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-02-18
Authors: Kwai, B.X.C., Bashiri, G., Leung, I.K.H.
PDB entry 8g8n: CTLA4 Fab with peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-02-18
Authors: Williams, J.C.
PDB entry 8g8o: The crystal structure of JAK2 in complex with Compound 31
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-18
Authors: Miller, S.T., Ellis, D.A.
PDB entry 8g8p: F420-2/GTP(GDP) complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus
Classification: LIGASE
Source organism: Archaeoglobus fulgidus DSM 4304
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-02-18
Authors: Bashiri, G., Squire, C.J.
PDB entry 8g8q: Monopartite p52 NLS in complex with Importin alpha 2
Classification: TRANSCRIPTION
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-02-19
Authors: Tsimbslyuk, S., Stewart, M., Forwood, J.K.
PDB entry 8g8r: RelB NLS in complex with Importin alpha 2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-02-19
Authors: Tsimbslyuk, S., Stewart, M., Forwood, J.K.
PDB entry 8g8s: bipartite p52 NLS in complex with Importin alpha 2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-19
Authors: Tsimbslyuk, S., Stewart, M., Forwood, J.K.
PDB entry 8g8v: GTP Cyclohydrolase-IB with sodium
Classification: HYDROLASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-02-20
Authors: McWhorter, K.L., Jhunjhunwala, R., Davis, K.M.
PDB entry 8g8w: Molecular mechanism of nucleotide inhibition of human uncoupling protein 1
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain K12); Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-02-20
Authors: Gogoi, P., Jones, S.A., Ruprecht, J.J., King, M.S., Lee, Y., Zogg, T., Pardon, E., Chand, D., Steimle, S., Copeman, D., Cotrim, C.A., Steyaert, J., Crichton, P.G., Moiseenkova-Bell, V., Kunji, E.R.S.
PDB entry 8g8x: X-ray co-crystal structure of compound 27 in with complex JAK2
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-02-20
Authors: Miller, S.T., Ellis, D.A.
PDB entry 8g8y: Hepatitis B virus capsid bound to importin alpha1
Classification: VIRUS LIKE PARTICLE
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-02-20
Authors: Yang, R., Cingolani, G.
PDB entry 8g8z: Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-02-20
Authors: Porta, J.C., Ohi, M.D., Walter, N.G., Frank, A.T., Deb, I., Meze, K.
PDB entry 8g90: LaM domain of human LARP1 in complex with Sp phosphorothioate isomer of AAAAA(SRA) RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-02-20
Authors: Kozlov, G., Jiang, J., Gehring, K.
PDB entry 8g91: LaM domain of human LARP1 in complex with Rp phosphorothioate isomer of AAAAA(SRA) RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-02-20
Authors: Kozlov, G., Jiang, J., Gehring, K.
PDB entry 8g92: Structure of inhibitor 16d-bound SPNS2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-21
Authors: Chen, H., Li, X.
PDB entry 8g93: Crystal structures of 17-beta-hydroxysteroid dehydrogenase 13
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-02-21
Authors: Liu, S.
PDB entry 8g94: Structure of CD69-bound S1PR1 coupled to heterotrimeric Gi
Classification: Guanine nucleotide-binding protein
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-02-21
Authors: Chen, H., Li, X.
PDB entry 8g95: Adenylation domain structure from NRPS-like Delta-Poly-L-Ornithine synthetase
Classification: LIGASE
Source organism: Acinetobacter baumannii AB307-0294
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-21
Authors: Patel, K.D., Gulick, A.M.
PDB entry 8g96: Adenylation domain structure from NRPS-like Delta-Poly-L-Ornithine synthetase (L-Ornithine bound)
Classification: LIGASE
Source organism: Acinetobacter baumannii AB307-0294
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-02-21
Authors: Patel, K.D., Gulick, A.M.
PDB entry 8g97: Adenylation domain structure from NRPS-like Delta-Poly-L-Ornithine synthetase (D-Ornithine bound)
Classification: LIGASE
Source organism: Acinetobacter baumannii AB307-0294
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-02-21
Authors: Patel, K.D., Gulick, A.M.
PDB entry 8g98: Adenylation domain structure from NRPS-like Delta-Poly-L-Ornithine synthetase (L-Lysine bound)
Classification: LIGASE
Source organism: Acinetobacter baumannii AB307-0294
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-02-21
Authors: Patel, K.D., Gulick, A.M.
PDB entry 8g99: Partial auto-inhibitory complex of Xenopus laevis DNA polymerase alpha-primase
Classification: REPLICATION, TRANSFERASE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-02-21
Authors: Mullins, E.A., Chazin, W.J., Eichman, B.F.
PDB entry 8g9a: Crystal structure of a resurrected ancestor (AncRNase) of the pancreatic-type RNases 2 and 3 sub-families
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-02-21
Authors: Tran, T.T.Q., Pham, N.T.H., Calmettes, C., Doucet, N.
PDB entry 8g9b: Human IMPDH2 mutant - L245P, treated with GTP, ATP, IMP, and NAD+; compressed filament segment reconstruction
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-21
Authors: O'Neill, A.G., Kollman, J.M.
PDB entry 8g9c: Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5- difluoromethylenebisphosphonate inositol pentakisphosphate (5-PCF2P-IP5), an analogue of 5-InsP7
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-02-21
Authors: Zong, G., Wang, H., Shears, S.
PDB entry 8g9d: Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5- phosphonodifluoroacetamide inositol pentakisphosphate (5-PCF2Am-InsP5), an analogue of 5-InsP7
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-02-21
Authors: Zong, G., Wang, H., Shears, S.
PDB entry 8g9e: Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with AMP-PNP and 5-(PCF2P)-IP5, an analog of 5-IP7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-21
Authors: Wang, H., Shears, S.B.
PDB entry 8g9f: Complete auto-inhibitory complex of Xenopus laevis DNA polymerase alpha-primase
Classification: REPLICATION, TRANSFERASE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-21
Authors: Mullins, E.A., Chazin, W.J., Eichman, B.F.
PDB entry 8g9j: Geometrically programmable nanomaterial construction using regularized protein building blocks
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-21
Authors: Huddy, T., Bera, A.K., Baker, D.
PDB entry 8g9k: Geometrically programmable nanomaterial construction using regularized protein building blocks
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-02-21
Authors: Bera, A.K., Huddy, T., Baker, D., Kang, A.
PDB entry 8g9l: DNA initiation subcomplex of Xenopus laevis DNA polymerase alpha-primase
Classification: REPLICATION, TRANSFERASE/DNA/RNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-21
Authors: Mullins, E.A., Durie, C.L., Ohi, M.D., Chazin, W.J., Eichman, B.F.
PDB entry 8g9m: Acinetobacter_baumannii short-chain dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-21
Authors: Shaw, K., Forwood, J.K.
PDB entry 8g9n: Partial DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase
Classification: REPLICATION, TRANSFERASE/DNA/RNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-02-21
Authors: Mullins, E.A., Durie, C.L., Ohi, M.D., Chazin, W.J., Eichman, B.F.
PDB entry 8g9o: Complete DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase
Classification: REPLICATION, TRANSFERASE/DNA/RNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-02-21
Authors: Mullins, E.A., Durie, C.L., Ohi, M.D., Chazin, W.J., Eichman, B.F.
PDB entry 8g9p: Tricomplex of RMC-4998, KRAS G12C, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-02-21
Authors: Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.
PDB entry 8g9q: Tricomplex of Compound-1, KRAS G12C, and CypA
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-02-21
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 8g9r: Cardiac amyloid fibrils extracted from a wild-type ATTR amyloidosis patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-02-21
Authors: Nguyen, B.A., Saelices, L.
PDB entry 8g9s: Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications
Classification: HYDROLASE/RNA
Source organism: Neisseria lactamica; Rhodobacter phage RcNL1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-22
Authors: Hu, C., Nam, K.H., Ke, A.
PDB entry 8g9t: Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications
Classification: HYDROLASE/RNA
Source organism: Neisseria lactamica; Rhodobacter phage RcNL1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-22
Authors: Hu, C., Nam, K.H., Ke, A.
PDB entry 8g9u: Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications
Classification: DNA BINDING PROTEIN
Source organism: Neisseria lactamica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-22
Authors: Hu, C., Nam, K.H., Ke, A.
PDB entry 8g9v: Crystal structures of 17-beta-hydroxysteroid dehydrogenase 13
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.645 Å
Deposited: 2023-02-22
Authors: Liu, S.
PDB entry 8g9w: Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 1)
Classification: IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.66 Å
Deposited: 2023-02-22
Authors: Changela, A., Gorman, J., Kwong, P.D.
PDB entry 8g9x: Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 2)
Classification: IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.46 Å
Deposited: 2023-02-22
Authors: Changela, A., Gorman, J., Kwong, P.D.