LiteFold/PDB huggingface dataset:
PDB entry 5gvl: Plasmodium vivax SHMT bound with PLP-glycine and GS182
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Plasmodium vivax (strain Salvador I)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2016-09-06
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G.
PDB entry 5gvm: Plasmodium vivax SHMT bound with PLP-glycine and GS557
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Plasmodium vivax (strain Salvador I)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2016-09-06
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G.
PDB entry 5gvn: Plasmodium vivax SHMT bound with PLP-glycine and GS653
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Plasmodium vivax (strain Salvador I)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-09-06
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G.
PDB entry 5gvo: Solution NMR structure of a new lasso peptide sphaericin
Classification: UNKNOWN FUNCTION
Source organism: Planomonospora sphaerica
Experimental method: SOLUTION NMR
Deposited: 2016-09-06
Authors: Hemmi, H., Kodani, S., Inoue, Y., Suzuki, M., Dohra, H., Suzuki, T., Ohnishi-Kameyama, M.
PDB entry 5gvp: Plasmodium vivax SHMT bound with PLP-glycine and GS654
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Plasmodium vivax (strain Salvador I)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2016-09-06
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G.
PDB entry 5gvq: Solution structure of the first RRM domain of human spliceosomal protein SF3b49
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2016-09-06
Authors: Kuwasako, K., Nameki, N., Tsuda, K., Takahashi, M., Sato, A., Tochio, N., Inoue, M., Terada, T., Kigawa, T., Kobayashi, N., Shirouzu, M., Ito, T., Sakamoto, T., Wakamatsu, K., Guntert, P., Takahashi, S., Yokoyama, S., Muto, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 5gvr: Crystal structure of the DDX41 DEAD domain in an apo closed form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2016-09-06
Authors: Omura, H., Oikawa, D., Nakane, T., Kato, M., Ishii, R., Goto, Y., Suga, H., Ishitani, R., Tokunaga, F., Nureki, O.
PDB entry 5gvs: Crystal structure of the DDX41 DEAD domain in an apo open form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-09-06
Authors: Omura, H., Oikawa, D., Nakane, T., Kato, M., Ishii, R., Goto, Y., Suga, H., Ishitani, R., Tokunaga, F., Nureki, O.
PDB entry 5gvt: Crystal structures of the serine protease domain of murine plasma kallikrein
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2016-09-06
Authors: Xu, M., Jiang, L., Huang, M.
PDB entry 5gvu: crystal structure of BVDV NS3 helicase domain
Classification: HYDROLASE
Source organism: Bovine viral diarrhea virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2016-09-06
Authors: Li, S., Mao, X.
PDB entry 5gvv: Crystal structure of the glycosyltransferase GlyE in Streptococcus pneumoniae TIGR4
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2016-09-07
Authors: Jiang, Y.L., Jin, H., Zhao, R.L., Yang, H.B., Chen, Y., Zhou, C.Z.
PDB entry 5gvw: Crystal structure of the apo-form glycosyltransferase GlyE in Streptococcus pneumoniae TIGR4
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-09-07
Authors: Jiang, Y.L., Jin, H., Zhao, R.L., Yang, H.B., Chen, Y., Zhou, C.Z.
PDB entry 5gvx: Structural insight into dephosphorylation by Trehalose 6-phosphate Phosphatase (OtsB2) from Mycobacterium Tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.596 Å
Deposited: 2016-09-07
Authors: Shan, S., Min, H., Liu, T., Jiang, D., Rao, Z.
PDB entry 5gvy: Crystal structure of SALT protein from Oryza sativa
Classification: SUGAR BINDING PROTEIN
Source organism: Oryza sativa subsp. indica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.662 Å
Deposited: 2016-09-07
Authors: Sharma, P., Sagar, A., Kaur, N., Sharma, I., Kirat, K., Ashish, F.N.U., Pati, P.K.
PDB entry 5gvz: Crystal structure of Peptidyl-tRNA hydrolase from Vibrio cholerae in space group C2221 at resolution 1.75A.
Classification: HYDROLASE
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2016-09-07
Authors: Shahid, S., Kabra, A., Pal, R.K., Arora, A.
PDB entry 5gw0: Crystal structure of SNX16 PX-Coiled coil
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2016-09-08
Authors: Xu, J., Liu, J.
PDB entry 5gw1: Crystal structure of SNX16 PX-Coiled coil in space group P212121
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2016-09-08
Authors: Xu, J., Liu, J.
PDB entry 5gw4: Structure of Yeast NPP-TRiC
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2016-09-08
Authors: Zang, Y., Jin, M., Wang, H., Cong, Y.
PDB entry 5gw5: Structure of TRiC-AMP-PNP
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2016-09-08
Authors: Zang, Y., Jin, M., Wang, H., Cong, Y.
PDB entry 5gw6: Water-Bridge Mediates Recognition of mRNA Cap in eIF4E
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2016-09-08
Authors: Brown, C.J.
PDB entry 5gw7: Crystal structure of the glycosynthase mutant E727A of Escherichia coli GH63 glycosidase in complex with glucose and lactose
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-09-08
Authors: Miyazaki, T., Tonozuka, T.
PDB entry 5gw8: Crystal structure of a putative DAG-like lipase (MgMDL2) from Malassezia globosa
Classification: HYDROLASE
Source organism: Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-09-09
Authors: Xu, J., Xu, H., Liu, J.
PDB entry 5gw9: Crystal structure of C163, a backbone circularized G-CSF
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2016-09-09
Authors: Miyafusa, T., Honda, S.
PDB entry 5gwa: Crystal structure of TLA-3 extended-spectrum beta-lactamase in a complex with avibactam
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2016-09-09
Authors: Wachino, J., Jin, W., Arakawa, Y.
PDB entry 5gwb: Hen Egg White Lysozyme native crystals soaked for 2 hours in precipitant solution containing 1 M guanidine hydrochloride and 25% glycerol, before data collection
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2016-09-10
Authors: Hosur, M.V., Kini, R.M., Yeow, C.
PDB entry 5gwd: Structure of Myroilysin
Classification: HYDROLASE
Source organism: Myroides sp. CSLB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2016-09-10
Authors: Xu, D., Ran, T., Wang, W.
PDB entry 5gwe: cytochrome P450 CREJ
Classification: ELECTRON TRANSPORT
Source organism: Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-09-11
Authors: Dong, S., liu, X., Wang, X., Feng, Y.
PDB entry 5gwf: FraC with GlcNAc(6S) bound
Classification: TOXIN
Source organism: Actinia fragacea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2016-09-11
Authors: Caaveiro, J.M.M., Tsumoto, K.
PDB entry 5gwg: Solution structure of rattusin
Classification: ANTIMICROBIAL PROTEIN
Source organism: Rattus norvegicus
Experimental method: SOLUTION NMR
Deposited: 2016-09-11
Authors: Lee, C.W., Min, H.J.
PDB entry 5gwi: Structure of a Human topoisomerase IIbeta fragment in complex with DNA and E7873R
Classification: ISOMERASE/DNA/ISOMERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.737 Å
Deposited: 2016-09-12
Authors: Wang, Y.R., Chen, S.F., Wu, C.C., Chan, N.L.
PDB entry 5gwj: Structure of a Human topoisomerase IIbeta fragment in complex with DNA and E7873S
Classification: ISOMERASE/DNA/ISOMERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.566 Å
Deposited: 2016-09-12
Authors: Wang, Y.R., Chen, S.F., Wu, C.C., Chan, N.L.
PDB entry 5gwk: Human topoisomerase IIalpha in complex with DNA and etoposide
Classification: ISOMERASE/DNA/ISOMERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.152 Å
Deposited: 2016-09-12
Authors: Wang, Y.R., Wu, C.C., Chan, N.L.
PDB entry 5gwl: Structure of two CCTG repeats
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2016-09-12
Authors: Guo, P., Lam, S.L.
PDB entry 5gwm: Solution structure of heterodimeric coiled-coil domain of Drosophila GABAB receptor 1 and 3
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: SOLUTION NMR
Deposited: 2016-09-12
Authors: Liu, X., Zhang, S., Zhang, C.X., Liu, J.
PDB entry 5gwn: Crystal structure of human RCC2
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.309 Å
Deposited: 2016-09-12
Authors: Liang, L., Yun, C.H., Yin, Y.X.
PDB entry 5gwo: Crystal structure of RCAR3:PP2C S265F/I267M with (+)-ABA
Classification: HYDROLASE/RECEPTOR
Source organism: Oryza sativa; Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.816 Å
Deposited: 2016-09-12
Authors: Han, S., Lee, S.
PDB entry 5gwp: Crystal structure of RCAR3:PP2C wild-type with (+)-ABA
Classification: HYDROLASE/RECEPTOR
Source organism: Oryza sativa; Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.577 Å
Deposited: 2016-09-12
Authors: Han, S., Lee, S.
PDB entry 5gwq: Structure of two TTTA repeats
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2016-09-13
Authors: Guo, P., Lam, S.L.
PDB entry 5gwr: 4-hydroxyisoleucine dehydrogenase complexed with NADH
Classification: OXIDOREDUCTASE
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-09-13
Authors: Shi, X., Miyakawa, T., Nakamura, A., Tanokura, M.
PDB entry 5gws: 4-hydroxyisoleucine dehydrogenase complexed with NADH and succinate
Classification: OXIDOREDUCTASE
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2016-09-13
Authors: Shi, X., Miyakawa, T., Nakamura, A., Tanokura, M.
PDB entry 5gwt: 4-hydroxyisoleucine dehydrogenase mutant complexed with NADH and succinate
Classification: OXIDOREDUCTASE
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-09-13
Authors: Shi, X., Miyakawa, T., Nakamura, A., Tanokura, M.
PDB entry 5gwv: Structure of MoeN5-Sso7d fusion protein in complex with a substrate analogue
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-09-14
Authors: Ko, T.-P., Guo, R.-T., Chen, C.-C.
PDB entry 5gww: Structure of MoeN5-Sso7d fusion protein in complex with a permethylated substrate analogue
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-09-14
Authors: Ko, T.-P., Guo, R.-T., Chen, C.-C.
PDB entry 5gwx: Crystal structure of glycine sarcosine N-methyltransferase from Methanohalophilus portucalensis in complex with S-adenosylmethionine and sarcosine
Classification: TRANSFERASE
Source organism: Methanohalophilus portucalensis FDF-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.205 Å
Deposited: 2016-09-14
Authors: Lee, Y.R., Lin, T.S., Lai, S.J., Liu, M.S., Lai, M.C., Chan, N.L.
PDB entry 5gwy: Structure of Main Protease from Human Coronavirus NL63: Insights for Wide Spectrum Anti-Coronavirus Drug Design
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human coronavirus NL63; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.852 Å
Deposited: 2016-09-14
Authors: Wang, F., Chen, C., Tan, W., Yang, K., Yang, H.
PDB entry 5gwz: The structure of Porcine epidemic diarrhea virus main protease in complex with an inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Porcine epidemic diarrhea virus CV777; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.444 Å
Deposited: 2016-09-14
Authors: Wang, F., Chen, C., Yang, K., Liu, X., Liu, H., Xu, Y., Chen, X., Liu, X., Cai, Y., Yang, H.
PDB entry 5gx1: Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 1.1 MGy (1st measurement)
Classification: HYDROLASE
Source organism: Photinus pyralis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-09-15
Authors: Hasegawa, K., Yamashita, K., Murai, T., Nuemket, N., Hirata, K., Ueno, G., Ago, H., Nakatsu, T., Kumasaka, T., Yamamoto, M.
PDB entry 5gx2: Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 3.4 MGy (3rd measurement)
Classification: HYDROLASE
Source organism: Photinus pyralis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-09-15
Authors: Hasegawa, K., Yamashita, K., Murai, T., Nuemket, N., Hirata, K., Ueno, G., Ago, H., Nakatsu, T., Kumasaka, T., Yamamoto, M.
PDB entry 5gx3: Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 6.9 MGy (6th measurement)
Classification: HYDROLASE
Source organism: Photinus pyralis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-09-15
Authors: Hasegawa, K., Yamashita, K., Murai, T., Nuemket, N., Hirata, K., Ueno, G., Ago, H., Nakatsu, T., Kumasaka, T., Yamamoto, M.
PDB entry 5gx4: Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 14 MGy (12th measurement)
Classification: HYDROLASE
Source organism: Photinus pyralis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-09-15
Authors: Hasegawa, K., Yamashita, K., Murai, T., Nuemket, N., Hirata, K., Ueno, G., Ago, H., Nakatsu, T., Kumasaka, T., Yamamoto, M.
PDB entry 5gx5: Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 26 MGy (23rd measurement)
Classification: HYDROLASE
Source organism: Photinus pyralis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-09-15
Authors: Hasegawa, K., Yamashita, K., Murai, T., Nuemket, N., Hirata, K., Ueno, G., Ago, H., Nakatsu, T., Kumasaka, T., Yamamoto, M.
PDB entry 5gx6: Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-4 position of GalNAc
Classification: SUGAR BINDING PROTEIN
Source organism: Streptobacillus moniliformis DSM 12112
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2016-09-15
Authors: Oiki, S., Mikami, B., Murata, K., Hashimoto, W.
PDB entry 5gx7: Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-6 position of GalNAc
Classification: TRANSPORT PROTEIN
Source organism: Streptobacillus moniliformis DSM 12112
Experimental method: X-RAY DIFFRACTION
Resolution: 1.991 Å
Deposited: 2016-09-15
Authors: Oiki, S., Mikami, B., Murata, K., Hashimoto, W.
PDB entry 5gx8: Crystal structure of solute-binding protein related to glycosaminoglycans
Classification: SUGAR BINDING PROTEIN
Source organism: Streptobacillus moniliformis DSM 12112
Experimental method: X-RAY DIFFRACTION
Resolution: 1.778 Å
Deposited: 2016-09-15
Authors: Oiki, S., Mikami, B., Murata, K., Hashimoto, W.
PDB entry 5gx9: PYP mutant - E46Q
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: NEUTRON DIFFRACTION
Resolution: 1.493 Å
Deposited: 2016-09-16
Authors: Yonezawa, K.
PDB entry 5gxb: crystal structure of a LacY/Nanobody complex
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli (strain K12); Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2016-09-16
Authors: Jiang, X., Wu, J.P., Yan, N., Kaback, H.R.
PDB entry 5gxd: Structure of acryloyl-CoA lyase PrpE from Dinoroseobacter shibae DFL 12
Classification: LYASE
Source organism: Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2016-09-17
Authors: Zhang, Y.Z., Wang, P., Cao, H.Y.
PDB entry 5gxe: Crystal structure of Acryloyl-CoA reductase AcuI in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.696 Å
Deposited: 2016-09-17
Authors: Zhang, Y.Z., Wang, P., Cao, H.Y.
PDB entry 5gxf: Acryloyl-CoA reductase AcuI from Ruegeria pomeroyi DSS-3
Classification: OXIDOREDUCTASE
Source organism: Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.288 Å
Deposited: 2016-09-17
Authors: Zhang, Y.Z., Wang, P., Cao, H.Y.
PDB entry 5gxg: High-resolution crystal structure of the electron transfer complex of cytochrome p450cam with putidaredoxin
Classification: OXIDOREDUCTASE/ELECTRON TRANSPORT
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-09-17
Authors: Kikui, Y., Hiruma, Y., Ubbink, M., Nojiri, M.
PDB entry 5gxh: The structure of the Gemin5 WD40 domain with AAUUUUUG
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-09-17
Authors: Xu, C., He, H., Li, Y., Dong, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
PDB entry 5gxi: Structure of the Gemin5 WD40 domain in complex with AAUUUUUGAG
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2016-09-18
Authors: Xu, C., He, H., Li, Y., Dong, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
PDB entry 5gxj: Zika Virus NS2B-NS3 protease
Classification: HYDROLASE
Source organism: synthetic construct; Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2016-09-18
Authors: Yang, H., Chen, X., Ji, X., Xiong, Y., Yang, K.
PDB entry 5gxo: Discovery of a compound that activates SIRT3 to deacetylate Manganese Superoxide Dismutase
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-09-19
Authors: Lu, J., Li, J., Wu, M., Wang, J., Xia, Q.
PDB entry 5gxp: Cationic Trypsin With GOL/PGE as Dimer at pH 4.6
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2016-09-19
Authors: Manohar, R., Gunasekaran, K.
PDB entry 5gxq: The crystal structure of the nucleosome containing H3.6
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2016-09-19
Authors: Taguchi, H., Xie, Y., Horikoshi, N., Kurumizaka, H.
PDB entry 5gxt: Crystal structure of PigG
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli; Serratia sp. FS14
Experimental method: X-RAY DIFFRACTION
Resolution: 2.245 Å
Deposited: 2016-09-20
Authors: Zhang, F., Ran, T., Xu, D., Wang, W.
PDB entry 5gxu: Cystal structure of Arabidopsis ATR2
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-09-20
Authors: Niu, G., Liu, L.
PDB entry 5gxv: Crystal structure of PigG
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli; Serratia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-09-20
Authors: Zhang, F., Ran, T., Xu, D., Wang, W.
PDB entry 5gxw: Importin and NuMA complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.394 Å
Deposited: 2016-09-20
Authors: Chang, C.-C., Huang, T.-L., Hsia, K.-C.
PDB entry 5gxx: Crystal structure of endoglucanase CelQ from Clostridium thermocellum complexed with Tris
Classification: HYDROLASE
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2016-09-21
Authors: Jeng, W.Y., Liu, C.I., Wang, A.H.J.
PDB entry 5gxy: Crystal structure of endoglucanase CelQ from Clostridium thermocellum complexed with cellobiose and Tris
Classification: HYDROLASE
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-09-21
Authors: Jeng, W.Y., Liu, C.I., Wang, A.H.J.
PDB entry 5gxz: Crystal structure of endoglucanase CelQ from Clostridium thermocellum complexed with cellobiose and cellotriose
Classification: HYDROLASE
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2016-09-21
Authors: Jeng, W.Y., Liu, C.I., Wang, A.H.J.
PDB entry 5gy0: Crystal structure of endoglucanase CelQ from Clostridium thermocellum complexed with cellotetraose
Classification: HYDROLASE
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2016-09-21
Authors: Jeng, W.Y., Liu, C.I., Wang, A.H.J.
PDB entry 5gy1: Crystal structure of endoglucanase CelQ from Clostridium thermocellum complexed with cellotriose
Classification: HYDROLASE
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2016-09-21
Authors: Jeng, W.Y., Liu, C.I., Wang, A.H.J.
PDB entry 5gy2: Crystal structure of a complex between Bacillus subtilis flagellin and zebrafish Toll-like receptor 5
Classification: IMMUNE SYSTEM
Source organism: Bacillus subtilis subsp. spizizenii strain W23; Danio rerio; Eptatretus burgeri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-09-21
Authors: Song, W.S., Yoon, S.I.
PDB entry 5gy3: The crystal structure of endoglucanase Cel10, a family 8 glycosyl hydrolase from Klebsiella pneumoniae
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2016-09-21
Authors: Attigani, A., Li, S.P., Sun, L.F.
PDB entry 5gy6: Ribonuclease from Hericium erinaceus (RNase He1)
Classification: HYDROLASE
Source organism: Hericium erinaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2016-09-21
Authors: Kobayashi, H., Sangawa, T., Takebe, K., Itagaki, T., Motoyoshi, N., Suzuki, M.
PDB entry 5gy7: X-Ray structure of H243I mutant of UDP-Galactose 4-epimerase from E.coli:evidence for existence of open and closed active site during catalysis.
Classification: ISOMERASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2016-09-21
Authors: Singh, N., Tiwari, P., Phulera, S., Dixit, A., Choudhury, D.
PDB entry 5gy8: Crystal structure of ENZbleach xylanase T28C+T60C mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gy9: Crystal structure of ENZbleach xylanase A74C+G84C mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gya: Crystal structure of ENZbleach xylanase V5N+V6N+K7R+K223R+K227R mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gyb: Crystal structure of ENZbleach xylanase V5N+V6N+K7R+K223R+K227R and T28C+T60C mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gyc: Crystal structure of ENZbleach xylanase K73R+K185R and T28C+T60C mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gyd: Crystal Structure of Mdm12
Classification: LIPID TRANSPORT
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 3.106 Å
Deposited: 2016-09-22
Authors: Jeong, H., Park, J., Lee, C.
PDB entry 5gye: Crystal structure of ENZbleach xylanase T28C+T60C and T77C+E249C mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gyf: Crystal structure of ENZbleach xylanase T28C+T60C+L59F mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gyg: Crystal structure of ENZbleach xylanase T28C+T60C mutant with three N-teminal residue truncation
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gyh: Crystal structure of ENZbleach xylanase T28C+T60C+T48F+L59F mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gyi: Crystal structure of ENZbleach xylanase V176C+E220C mutant
Classification: HYDROLASE
Source organism: termite gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2016-09-22
Authors: Chitnumsub, P., Jaruwat, A., Boonyapakorn, K.
PDB entry 5gyj: Structure of catalytically active sortase from Clostridium difficile
Classification: HYDROLASE
Source organism: Peptoclostridium difficile (strain 630)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.801 Å
Deposited: 2016-09-22
Authors: Yin, J.-C., Fei, C.-H., Hsiao, Y.-Y., Nix, J.C., Huang, I.-H., Wang, S.
PDB entry 5gyk: Crystal Structure of Mdm12-deletion mutant
Classification: LIPID TRANSPORT
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 3.596 Å
Deposited: 2016-09-22
Authors: Jeong, H., Park, J., Lee, C.
PDB entry 5gyl: Structure of Cicer arietinum 11S gloubulin
Classification: PLANT PROTEIN
Source organism: Cicer arietinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-09-22
Authors: Zhou, A., Zhang, F.
PDB entry 5gyn: Crystal structure of human pyridoxal 5'-phosphate phosphatase (Chronophin) mutant - C221S
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.995 Å
Deposited: 2016-09-23
Authors: Lee, H.J., Cho, H.J., Kang, B.S.
PDB entry 5gyq: Putative receptor-binding domain of bat-derived coronavirus HKU9 spike protein
Classification: VIRAL PROTEIN
Source organism: Bat coronavirus HKU9
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-09-23
Authors: Huang, C., Qi, J., Gao, G.F.
PDB entry 5gyr: Tetrameric Allochromatium vinosum cytochrome c'
Classification: ELECTRON TRANSPORT
Source organism: Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-09-23
Authors: Yamanaka, M., Hoshizumi, M., Nagao, S., Nakayama, R., Shibata, N., Higuchi, Y., Hirota, S.
PDB entry 5gyy: Plant receptor complex
Classification: PLANT PROTEIN
Source organism: Brassica rapa subsp. oleifera
Experimental method: X-RAY DIFFRACTION
Resolution: 2.351 Å
Deposited: 2016-09-24
Authors: Ma, R., Han, Z., Hu, Z., Lin, G., Gong, X., Zhang, H., June, N., Chai, J.
PDB entry 5gyz: luciferase AMP/7-cy-L complex
Classification: OXIDOREDUCTASE
Source organism: Photinus pyralis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-09-26
Authors: Su, J., Wang, F.
PDB entry 5gz0: Crystal structure of FM329, a recombinant Fab adopted from cetuximab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens/Mus musculus xenograft
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-09-26
Authors: Sim, D.W., Kim, J.H., Kim, Y.P., Won, H.S.
PDB entry 5gz1: Structure of substrate/cofactor-free D-amino acid dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Ureibacillus thermosphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2016-09-26
Authors: Sakuraba, H., Seto, T., Hayashi, J., Akita, H., Yoneda, K., Ohshima, T.
PDB entry 5gz2: luciferase complex with 7-cy-L
Classification: OXIDOREDUCTASE
Source organism: Photinus pyralis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-09-26
Authors: Su, J., Wang, F., Gu, L.
PDB entry 5gz3: Structure of D-amino acid dehydrogenase in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Ureibacillus thermosphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2016-09-26
Authors: Sakuraba, H., Seto, T., Hayashi, J., Akita, H., Yoneda, K., Ohshima, T.
PDB entry 5gz4: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra)
Classification: HYDROLASE
Source organism: Naja atra
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2016-09-26
Authors: Lin, C.C., Wu, B.S., Wu, W.G.
PDB entry 5gz5: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP
Classification: HYDROLASE
Source organism: Naja atra
Experimental method: X-RAY DIFFRACTION
Resolution: 2.093 Å
Deposited: 2016-09-26
Authors: Lin, C.C., Wu, B.S., Wu, W.G.
PDB entry 5gz6: Structure of D-amino acid dehydrogenase in complex with NADPH and 2-keto-6-aminocapronic acid
Classification: OXIDOREDUCTASE
Source organism: Ureibacillus thermosphaericus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2016-09-26
Authors: Sakuraba, H., Seto, T., Hayashi, J., Akita, H., Yoneda, K., Ohshima, T.
PDB entry 5gz7: Crystal Structure of the complex of Ribosome Inactivating Protein with 1,2-ethanediol at 1.95 Angstrom resolution
Classification: HYDROLASE
Source organism: Momordica balsamina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2016-09-26
Authors: Tiwari, P., Pandey, S.N., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5gz8: Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2016-09-27
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5gz9: Crystal structure of catalytic domain of Protein O-mannosyl Kinase in complexes with AMP-PNP, Magnesium ions and glycopeptide
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2016-09-27
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5gza: protein O-mannose kinase
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-09-27
Authors: Xiao, J.
PDB entry 5gzb: Crystal Structure of Transcription Factor TEAD4 in Complex with M-CAT DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.704 Å
Deposited: 2016-09-28
Authors: He, F., Shi, Z.B., Zhou, Z.C.
PDB entry 5gzc: Crystal structure of Galectin-8 N-CRD with part of linker
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2016-09-28
Authors: Su, J.Y., Si, Y.L.
PDB entry 5gzd: Galectin-8 N-terminal domain carbohydrate recognition domain
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2016-09-28
Authors: Su, J.Y., Si, Y.L.
PDB entry 5gze: Galectin-8 N-terminal domain carbohydrate recognition domain
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2016-09-28
Authors: Su, J.Y., Si, Y.L.
PDB entry 5gzf: Galectin-8 N-terminal domain carbohydrate recognition domain
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2016-09-28
Authors: Su, J.Y., Si, Y.L.
PDB entry 5gzg: Galectin-8 N-terminal domain carbohydrate recognition domain
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2016-09-28
Authors: Su, J.Y., Si, Y.L.
PDB entry 5gzh: Endo-beta-1,2-glucanase from Chitinophaga pinensis - ligand free form
Classification: HYDROLASE
Source organism: Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-09-28
Authors: Abe, K., Nakajima, M., Arakawa, T., Fushinobu, S., Taguchi, H.
PDB entry 5gzi: Cyclodeaminase_PA
Classification: LYASE
Source organism: Streptomyces pristinaespiralis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2016-09-28
Authors: Ying, H., Chen, K.
PDB entry 5gzj: Cyclodeaminase_PA
Classification: LYASE
Source organism: Streptomyces pristinaespiralis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2016-09-28
Authors: Ying, H., Chen, K.
PDB entry 5gzk: Endo-beta-1,2-glucanase from Chitinophaga pinensis - sophorotriose and glucose complex
Classification: HYDROLASE
Source organism: Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-09-28
Authors: Abe, K., Nakajima, M., Arakawa, T., Fushinobu, S., Taguchi, H.
PDB entry 5gzl: Cyclodeaminase_PA
Classification: LYASE
Source organism: Streptomyces pristinaespiralis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-09-29
Authors: Ying, H., Chen, K.
PDB entry 5gzm: Cyclodeaminase_PA
Classification: LYASE
Source organism: Streptomyces pristinaespiralis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-09-29
Authors: Ying, H., Chen, K.
PDB entry 5gzn: Structure of neutralizing antibody bound to Zika envelope protein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2016-09-29
Authors: Wang, Q., Yang, H., Liu, X., Dai, L., Ma, T., Qi, J., Wong, G., Peng, R., Liu, S., Li, J., Li, S., Song, J., Liu, J., He, J., Yuan, H., Xiong, Y., Liao, Y., Li, J., Yang, J., Tong, Z., Griffin, B., Bi, Y., Liang, M., Xu, X., Cheng, G., Wang, P., Qiu, X., Kobinger, G., Shi, Y., Yan, J., Gao, G.F.
PDB entry 5gzo: Structure of neutralizing antibody bound to Zika envelope protein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.755 Å
Deposited: 2016-09-29
Authors: Wang, Q., Yang, H., Liu, X., Dai, L., Ma, T., Qi, J., Wong, G., Peng, R., Liu, S., Li, J., Li, S., Song, J., Liu, J., He, J., Yuan, H., Xiong, Y., Liao, Y., Li, J., Yang, J., Tong, Z., Griffin, B., Bi, Y., Liang, M., Xu, X., Cheng, G., Wang, P., Qiu, X., Kobinger, G., Shi, Y., Yan, J., Gao, G.F.
PDB entry 5gzp: Y74COX MUTANT OF PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE
Classification: ISOMERASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2016-09-30
Authors: Pareek, V., Balaram, P., Murthy, M.R.N.
PDB entry 5gzr: Zika virus E protein complexed with a neutralizing antibody Z23-Fab
Classification: VIRUS
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å
Deposited: 2016-10-01
Authors: Gao, G.G., Shi, Y., Peng, R., Liu, S.
PDB entry 5gzs: Structure of VC protein
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2016-10-01
Authors: Xu, M., Wang, Y.Z., Yang, X.A., Xie, W., Jiang, T.
PDB entry 5gzt: Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
Classification: HYDROLASE
Source organism: Paenibacillus sp. FPU-7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-10-01
Authors: Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
PDB entry 5gzu: Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
Classification: HYDROLASE
Source organism: Paenibacillus sp. FPU-7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2016-10-01
Authors: Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
PDB entry 5gzv: Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
Classification: HYDROLASE
Source organism: Paenibacillus sp. FPU-7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2016-10-01
Authors: Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
PDB entry 5gzw: Crystal structure of AmpC BER adenylylated by acetyl-AMP
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.489 Å
Deposited: 2016-10-02
Authors: An, Y.J., Cha, S.S.
PDB entry 5gzx: The complex structure of D-2-haloacid dehalogenase mutant with D-2-CPA
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2016-10-02
Authors: Wang, Y., Xue, S.
PDB entry 5gzy: The complex structure of D-2-haloacid dehalogenase with L-LA
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2016-10-02
Authors: Wang, Y., Xue, S.
PDB entry 5gzz: Crystal Structure of FIN219-SjGST complex with JA
Classification: LIGASE/TRANSFERASE
Source organism: Arabidopsis thaliana; Schistosoma japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.386 Å
Deposited: 2016-10-02
Authors: Chen, C.Y., Cheng, Y.S.
PDB entry 5h00: The crystal structure of D-2-haloacid dehalogenase
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2016-10-02
Authors: Wang, Y., Xue, S.
PDB entry 5h01: The crystal structure of D-2-halacid dehalogenase mutant
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.194 Å
Deposited: 2016-10-02
Authors: Xue, S., Wang, Y.
PDB entry 5h02: Crystal structure of Methanohalophilus portucalensis glycine sarcosine N-methyltransferase tetramutant (H21G, E23T, E24N, L28S)
Classification: TRANSFERASE
Source organism: Methanohalophilus portucalensis FDF-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.776 Å
Deposited: 2016-10-02
Authors: Lee, Y.R., Lin, T.S., Lai, S.J., Liu, M.S., Lai, M.C., Chan, N.L.
PDB entry 5h03: Crystal structure of an ADP-ribosylating toxin BECa from C. perfringens
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2016-10-03
Authors: Kawahara, K., Yonogi, S., Munetomo, R., Oki, H., Yoshida, T., Ohkubo, T., Kumeda, Y., Matsuda, S., Kodama, T., Iida, T., Nakamura, S.
PDB entry 5h04: Crystal structure of an ADP-ribosylating toxin BECa of a novel binary enterotoxin of C. perfringens with NADH
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.825 Å
Deposited: 2016-10-03
Authors: Kawahara, K., Yonogi, S., Munetomo, R., Oki, H., Yoshida, T., Ohkubo, T., Kumeda, Y., Matsuda, S., Kodama, T., Iida, T., Nakamura, S.
PDB entry 5h05: Crystal structure of AmyP E221Q in complex with MALTOTRIOSE
Classification: HYDROLASE
Source organism: marine metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2016-10-03
Authors: He, C., Liu, Y.
PDB entry 5h06: Crystal structure of AmyP in complex with maltose
Classification: HYDROLASE
Source organism: marine metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2016-10-03
Authors: He, C., Liu, Y.
PDB entry 5h07: TNIP2-Ub complex, C2 form
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.586 Å
Deposited: 2016-10-04
Authors: Lo, Y.C., Lin, S.C.
PDB entry 5h08: Human PTPRZ D1 domain complexed with NAZ2329
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2016-10-04
Authors: Sugawara, H.
PDB entry 5h09: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-ethyl2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-4-methylpentanoate
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.945 Å
Deposited: 2016-10-04
Authors: Tomabechi, Y., Kukimoto-Niino, M., Shirouzu, M.
PDB entry 5h0b: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-4-methylpentanoic acid
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.651 Å
Deposited: 2016-10-04
Authors: Tomabechi, Y., Kukimoto-Niino, M., Shirouzu, M.
PDB entry 5h0e: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-4-methylpentanamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-10-04
Authors: Tomabechi, Y., Kukimoto-Niino, M., Shirouzu, M.
PDB entry 5h0g: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-N,4-dimethylpentanamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-10-04
Authors: Tomabechi, Y., Kukimoto-Niino, M., Shirouzu, M.
PDB entry 5h0h: Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-N,N,4-trimethylpentanamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2016-10-04
Authors: Tomabechi, Y., Kukimoto-Niino, M., Shirouzu, M.
PDB entry 5h0i: Structure of OaAEP1 asparaginyl peptide ligase in its proenzyme form
Classification: HYDROLASE
Source organism: Oldenlandia affinis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2016-10-04
Authors: Yang, R., Wong, Y.H., Lescar, J., Wu, B.
PDB entry 5h0j: The crystal structure of WT Pedobacter heparinus SMUG2
Classification: LYASE
Source organism: Pedobacter heparinus DSM 2366
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2016-10-04
Authors: Xie, W., Cao, W., Pang, P.
PDB entry 5h0k: The crystal structure of WT Pedobacter heparinus SMUG2
Classification: LYASE
Source organism: Pedobacter heparinus DSM 2366
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2016-10-04
Authors: Xie, W., Cao, W., Pang, P.
PDB entry 5h0m: Crystal structure of deep-sea thermophilic bacteriophage GVE2 HNH endonuclease with zinc ion
Classification: HYDROLASE
Source organism: Geobacillus virus E2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2016-10-05
Authors: Zhang, L.K., Xu, D.D., Huang, Y.C., Gong, Y.
PDB entry 5h0n: Crystal structure of HIV-1 fusion inhibitor MT-WQ-IDL bound to gp41 NHR
Classification: VIRAL PROTEIN/VIRAL PROTEIN INHIBITOR
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2016-10-06
Authors: Zhu, Y., Ye, S., Zhang, R.
PDB entry 5h0o: Crystal structure of deep-sea thermophilic bacteriophage GVE2 HNH endonuclease with manganese ion
Classification: HYDROLASE
Source organism: Geobacillus virus E2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2016-10-06
Authors: Zhang, L.K., Xu, D.D., Huang, Y.C., Gong, Y.
PDB entry 5h0p: Crystal structure of EF-hand protein mutant
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.862 Å
Deposited: 2016-10-06
Authors: Park, K.R., An, J.Y., Kang, J.Y., Lee, J.G., Youn, H.S., Lee, Y., Mun, S.A., Jun, C.D., Song, W.K., Eom, S.H.
PDB entry 5h0q: Crystal structure of lipid binding protein Nakanori at 1.5A
Classification: LIPID BINDING PROTEIN
Source organism: Grifola frondosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.501 Å
Deposited: 2016-10-06
Authors: Makino, A., Abe, M., Ishitsuka, R., Murate, M., Kishimoto, T., Sakai, S., Hullin-Matsuda, F., Shimada, Y., Inaba, T., Miyatake, H., Tanaka, H., Kurahashi, A., Pack, C.G., Kasai, R.S., Kubo, S., Schieber, N.L., Dohmae, N., Tochio, N., Hagiwara, K., Sasaki, Y., Aida, Y., Fujimori, F., Kigawa, T., Nishikori, K., Parton, R.G., Kusumi, A., Sako, Y., Anderluh, G., Yamashita, M., Kobayashi, T., Greimel, P., Kobayashi, T.
PDB entry 5h0r: RNA dependent RNA polymerase ,vp4,dsRNA
Classification: TRANSFERASE/RNA
Source organism: Bombyx mori cytoplasmic polyhedrosis virus; Dendrolimus punctatus cypovirus 1; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2016-10-06
Authors: Li, X., Zhou, N., Chen, W., Zhu, B., Wang, X., Xu, B., Wang, J., Liu, H., Cheng, L.
PDB entry 5h0s: EM Structure of VP1A and VP1B
Classification: TRANSFERASE
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2016-10-06
Authors: Li, X., Zhou, N., Xu, B., Chen, W., Zhu, B., Wang, X., Wang, J., Liu, H., Cheng, L.
PDB entry 5h0t: Crystal structure of proliferating cell nuclear antigen from Leishmania donovani at 2.73 Angstrom resolution
Classification: DNA BINDING PROTEIN
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2016-10-06
Authors: Singh, P.K., Yadav, S.P., Sharma, P.S., Kaur, P., Sharma, S., Singh, T.P.