LiteFold/PDB huggingface dataset:
PDB entry 8yv7: X-ray structure of Thialysine N-epsilon-acetyltransferase from Caenorhabditis elegans
Classification: TRANSFERASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.38 Å
Deposited: 2024-03-28
Authors: Wang, N., Ma, X.
PDB entry 8yv8: Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-28
Authors: Kikuchi, A., Shikimachi, R., Nishiyama, A., Funabiki, H., Arita, K.
PDB entry 8yv9: Crystal structure of Caenorhabditis elegans HIM-8 ZF1-2-CTD domain in complex with Chromosome X pairing center
Classification: DNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2024-03-28
Authors: Li, F.D., Li, M.L.
PDB entry 8yva: Crystal structure of Caenorhabditis elegans ZIM-2 ZF1-2-CTD domain in complex with Chromosome V pairing center
Classification: DNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-28
Authors: Li, F.D., Li, M.L.
PDB entry 8yvb: Crystal structure of Caenorhabditis elegans ZIM-1 ZF1-2-CTD domain in complex with Chromosome II/III pairing center
Classification: DNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-28
Authors: Li, F.D., Li, M.L.
PDB entry 8yvc: Cryo-EM structure of carboxysomal midi-shell:icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 19)
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-03-28
Authors: Wang, P., Li, J.X., Li, T.P., Li, K., Ng, P.C., Wang, S.M., Chriscoli, V., Basle, A., Marles-Wright, J., Zhang, Y.Z., Liu, L.N.
PDB entry 8yvd: Cryo-EM structure of carboxysomal midi-shell: icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 16)
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-03-28
Authors: Wang, P., Li, J.X., Li, T.P., Li, K., Ng, P.C., Wang, S.M., Chriscoli, V., Basle, A., Marles-Wright, J., Zhang, Y.Z.
PDB entry 8yve: cryo-EM structure of carboxysomal midi-shell: icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 9)
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-03-28
Authors: Wang, P., Li, J.X., Li, T.P., Li, K., Ng, P.C., Wang, S.M., Chriscoli, V., Basle, A., Marles-Wright, J., Zhang, Y.Z., Liu, L.N.
PDB entry 8yvf: cryo-EM structure of carboxysomal midi-shell: assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T=9 Q=12)
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-03-28
Authors: Wang, P., Li, J.X., Li, T.P., Li, K., Ng, P.C., Wang, S.M., Chriscoli, V., Basle, A., Marles-Wright, J., Zhang, Y.Z., Liu, L.N.
PDB entry 8yvg: canine immunoproteasome 20S subunit in complex with compound 1
Classification: HYDROLASE
Source organism: Canis lupus familiaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2024-03-28
Authors: Kashima, A., Arai, Y.
PDB entry 8yvh: NADPH complex of Imine Reductase Mutant(M6) from Pochonia chlamydosporia 170
Classification: OXIDOREDUCTASE
Source organism: Pochonia chlamydosporia 170
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-28
Authors: Shi, M., zheng, G.W.
PDB entry 8yvi: Cryo-EM structure of carboxysomal midi-shell: icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 13)
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-03-28
Authors: Wang, P., Li, J.X., Li, T.P., Li, K., Ng, P.C., Wang, S.M., Chriscoli, V., Basle, A., Marles-Wright, J., Zhang, Y.Z., Liu, L.N.
PDB entry 8yvj: Crystal structure of the C. difficile toxin A CROPs domain fragment 2592-2710 bound to H5.2 nanobody
Classification: TOXIN/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Clostridioides difficile 342
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-03-28
Authors: Sluchanko, N.N., Varfolomeeva, L.A., Shcheblyakov, D.V., Belyi, Y.F., Logunov, D.Y., Gintsburg, A.L., Popov, V.O., Boyko, K.M.
PDB entry 8yvk: Neuraminidase of A/Red knot/Delaware Bay/310/2016 H10N4 in complex with CAV-F6 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/red knot/Delaware Bay/310/2016(H10N4))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-03-28
Authors: Wang, X., Ge, J., Li, X.
PDB entry 8yvl: Neuraminidase of A/California/04/2009 HIN1 in complex with CAV-F34 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/California/04/2009(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2024-03-28
Authors: Wang, X., Ge, J., Li, X.
PDB entry 8yvm: Neuraminidase of A/Switzerland/9715293/2013 H3N2 in complex with CAV-F34 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-03-28
Authors: Wang, X., Ge, J., Li, X.
PDB entry 8yvn: Neuraminidase of A/Switzerland/9715293/2013 H3N2 in complex with CAV-F6 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-03-28
Authors: Wang, X., Ge, J., Li, X.
PDB entry 8yvo: Crystal structure of the C. difficile toxin A CROPs domain fragment 2639-2707 bound to C4.2 nanobody
Classification: TOXIN/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-28
Authors: Sluchanko, N.N., Varfolomeeva, L.A., Shcheblyakov, D.V., Belyi, Y.F., Logunov, D.Y., Gintsburg, A.L., Popov, V.O., Boyko, K.M.
PDB entry 8yvp: canine immunoproteasome 20S subunit in complex with compound 1
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-03-29
Authors: Kashima, A., Arai, Y.
PDB entry 8yvr: Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with 1-deoxynojirimycin
Classification: HYDROLASE
Source organism: Flavobacterium johnsoniae UW101
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-29
Authors: Nakamura, S., Miyazaki, T.
PDB entry 8yvs: Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with castanospermine
Classification: HYDROLASE
Source organism: Flavobacterium johnsoniae UW101
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-03-29
Authors: Nakamura, S., Miyazaki, T.
PDB entry 8yvu: structure of Ige receptor
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-03-29
Authors: Chen, M.Y., Su, Q., Shi, Y.G.
PDB entry 8yvv: The Crystal Structure of BTK from Biortus
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-03-29
Authors: Wang, F., Cheng, W., Yuan, Z., Lin, D., Pan, W.
PDB entry 8yvw: Crystal structure of D12N mutant of L-azetidine-2-carboxylate hydrolase
Classification: HYDROLASE
Source organism: Pseudomonas sp. A2C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2024-03-29
Authors: Toyoda, M., Mizutani, K., Mikami, B., Wackett, L.P., Esaki, N., Kurihara, T.
PDB entry 8yvy: Semliki Forest virus virion
Classification: VIRAL PROTEIN
Source organism: Semliki Forest virus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-03-29
Authors: Zheng, T., Wang, J., Yang, D.
PDB entry 8yvz: Semliki Forest virus viron
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Semliki Forest virus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-03-29
Authors: Wang, J., Zheng, T., Yang, D.
PDB entry 8yw0: Semliki Forest virus viron
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Semliki Forest virus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-03-29
Authors: Wang, J., Zheng, T., Yang, D.
PDB entry 8yw1: Semliki Forest virus viron in complex with VLDLR
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Semliki Forest virus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2024-03-29
Authors: Wang, J., Zheng, T., Yang, D.
PDB entry 8yw2: Semliki Forest virus viron in complex with VLDLR
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Semliki Forest virus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-03-29
Authors: Wang, J., Zheng, T., Yang, D.
PDB entry 8yw3: Cryo-EM structure of the retatrutide-bound human GLP-1R-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-03-29
Authors: Li, W.Z., Zhou, Q.T., Cong, Z.T., Yuan, Q.N., Li, W.X., Zhao, F.H., Xu, H.E., Zhao, L.H., Yang, D.H., Wang, M.W.
PDB entry 8yw4: Cryo-EM structure of the retatrutide-bound human GIPR-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-03-29
Authors: Li, W.Z., Zhou, Q.T., Cong, Z.T., Yuan, Q.N., Li, W.X., Zhao, F.H., Xu, H.E., Zhao, L.H., Yang, D.H., Wang, M.W.
PDB entry 8yw5: Cryo-EM structure of the retatrutide-bound human GCGR-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-03-29
Authors: Li, W.Z., Zhou, Q.T., Cong, Z.T., Yuan, Q.N., Li, W.X., Zhao, F.H., Xu, H.E., Zhao, L.H., Yang, D.H., Wang, M.W.
PDB entry 8yw6: Cryo-EM structure of apo human mitochondrial pyruvate carrier in the IMS-open conformation at pH 8.0
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-03-29
Authors: Shi, J.H., Liang, J.M., Ma, D.
PDB entry 8yw7: Structure of CylI in complex with resorcinol product
Classification: TRANSFERASE
Source organism: Cylindrospermum licheniforme UTEX B 2014
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-30
Authors: Wang, H.Q., Xiang, Z.
PDB entry 8yw8: Cryo-EM structure of human mitochondrial pyruvate carrier in complex with the inhibitor UK5099
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli BL21(DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-03-30
Authors: Shi, J.H., Liang, J.M., Ma, D.
PDB entry 8yw9: Cryo-EM structure of human mitochondrial pyruvate carrier in the matrix-facing conformation at pH 6.8
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli BL21(DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-03-30
Authors: Shi, J.H., Liang, J.M., Ma, D.
PDB entry 8ywa: The structure of IgE receptor binding to IgE
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-03-30
Authors: Chen, M.Y., Su, Q., Shi, Y.G.
PDB entry 8ywb: a protein with a ligand
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2024-03-30
Authors: Zhang, H., Li, X.
PDB entry 8ywd: Crystal structure of trehalose synthase mutant N253C from Deinococcus radiodurans
Classification: ISOMERASE
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-03-30
Authors: Ye, L.C., Chen, S.C.
PDB entry 8ywe: Local refinement of SARS-CoV-2 Omicron BA.2.86 S complexed with Abs G7-Fc
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2024-03-31
Authors: Ma, Y., Liu, Q., Rehati, P., Zhang, Z.
PDB entry 8ywf: Cryo-EM structure of GLP1 complex bound with Retatrutide
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-03-31
Authors: Zhao, L., Xu, H.E., Yuan, Q.
PDB entry 8ywg: The structure of ASFV DNA polymerase in apo state
Classification: VIRAL PROTEIN
Source organism: African swine fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-03-31
Authors: Kuai, L., Sun, J.Q., Peng, Q., Shi, Y.
PDB entry 8ywh: Cryo-EM structure of small and dead form SaCas9-RNA-DNA ternary complex (sdCas9)
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-03-31
Authors: Kang, E.S., Kim, N.H., Thach, T.T., Hyun, J., Kim, Y.H.
PDB entry 8ywi: The structure of ASFV DNA polymerase in replicating state
Classification: VIRAL PROTEIN/DNA
Source organism: African swine fever virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-31
Authors: Kuai, L., Sun, J.Q., Peng, Q., Shi, Y.
PDB entry 8ywm: The structure of ASFV DNA polymerase in editing state
Classification: VIRAL PROTEIN/DNA
Source organism: African swine fever virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-31
Authors: Kuai, L., Sun, J.Q., Peng, Q., Shi, Y.
PDB entry 8ywo: Crystal structure of L-azetidine-2-carboxylate hydrolase soaked in (S)-azetidine-2-carboxylic acid
Classification: HYDROLASE
Source organism: Pseudomonas sp. A2C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2024-03-31
Authors: Toyoda, M., Mizutani, K., Mikami, B., Wackett, L.P., Esaki, N., Kurihara, T.
PDB entry 8ywp: Crystal structure of the Fab fragment of anti-IL-6 antibody I9H
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-03-31
Authors: Yudenko, A., Bukhdruker, S., Eliseev, I., Rodin, S., Burtseva, A., Petrov, A., Zlobina, O., Ischenko, A., Borshchevskiy, V.
PDB entry 8ywq: Crystal structure of the Fab fragment of the anti-IL-6 antibody I9H in complex with a domain-swapped IL-6 dimer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2024-03-31
Authors: Bukhdruker, S., Yudenko, A., Marin, E., Remeeva, A., Rodin, S., Burtseva, A., Petrov, A., Ischenko, A., Borshchevskiy, V.
PDB entry 8ywr: Crystal structure of the Fab fragment of the anti-IL-6 antibody 68F2 in complex with a domain-swapped IL-6 dimer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2024-03-31
Authors: Bukhdruker, S., Yudenko, A., Borshchevskiy, V.
PDB entry 8ywt: The isolated Vo domain of V/A-ATPase from Thermus thermophilus.
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-04-01
Authors: Kishikawa, J., Nishida, Y., Nakano, A., Yokoyama, K.
PDB entry 8ywu: Human PPAR alpha ligand binding domain in complex with a 1H-pyrazolo[3,4-b]pyridine-derived compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-04-01
Authors: Tachibana, K., Morie, T., Fukuda, S., Yuzuriha, T., Ishimoto, K., Nunomura, K., Lin, B., Miyachi, H., Oki, H., Kawahara, K., Meguro, K., Nakagawa, S., Tsujikawa, K., Akai, S., Doi, T., Yoshida, T.
PDB entry 8ywv: Human PPAR alpha ligand binding domain in complex with a 1H-pyrazolo[3,4-b]pyridine-derived compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-04-01
Authors: Tachibana, K., Morie, T., Fukuda, S., Yuzuriha, T., Ishimoto, K., Nunomura, K., Lin, B., Miyachi, H., Oki, H., Kawahara, K., Meguro, K., Nakagawa, S., Tsujikawa, K., Akai, S., Doi, T., Yoshida, T.
PDB entry 8yww: The structure of HKU1-B S protein with bsAb1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-04-01
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8ywx: the complex structure of the H4B6 Fab with the RBD of Omicron BA.5 S protein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-01
Authors: Xia, L.Y., Zhang, Y.Y., Zhou, Q.
PDB entry 8ywy: Crystal structure of SARS-Cov-2 main protease E166N mutant in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-01
Authors: Zhou, X.L., Wang, W.W., Zhang, J., Li, J.
PDB entry 8ywz: Crystal structure of SARS-Cov-2 main protease H163A mutant in complex with Bofutrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-04-01
Authors: Zou, X.F., Wang, W.W., Zhang, J., Li, J.
PDB entry 8yx0: Crystal structure of Procambarus clarkii Arginine kinase
Classification: ALLERGEN
Source organism: Procambarus clarkii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.566 Å
Deposited: 2024-04-01
Authors: Yang, Y., Jin, T.C.
PDB entry 8yx1: CD40 in complex with Bleselumab Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-04-01
Authors: Caaveiro, J.M.M., Fernandez-Perez, J., Tsumoto, K.
PDB entry 8yx2: Crystal Structure of SARS CoV-2 Papain-like Protease PLpro-C111S in Complex with GZNL-P4
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-04-02
Authors: Lu, Y., Shang, J.
PDB entry 8yx3: Crystal Structure of SARS CoV-2 Papain-like Protease PLpro-C111S in Complex with GZNL-P28
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-02
Authors: Lu, Y., Shang, J.
PDB entry 8yx4: Crystal Structure of SARS CoV-2 Papain-like Protease PLpro-C111S in Complex with GZNL-P31
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-04-02
Authors: Lu, Y., Shang, J.
PDB entry 8yx5: Crystal Structure of SARS CoV-2 Papain-like Protease PLpro-C111S in Complex with GZNL-P35
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-04-02
Authors: Lu, Y., Shang, J.
PDB entry 8yx6: Structure of a Cys-loop Receptor in Zinc Binding State
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-04-02
Authors: Lu, X.H., Yang, X., Shen, Y.Q.
PDB entry 8yx7: Structure of a Cys-loop Receptor under Acidic Condition
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-04-02
Authors: Lu, X.H., Yang, X., Shen, Y.Q.
PDB entry 8yx8: Structure of a Cys-loop Receptor in Apo State
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-04-02
Authors: Lu, X.H., Yang, X., Shen, Y.Q.
PDB entry 8yx9: CD40 in complex with Dacetuzumab Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-04-02
Authors: Caaveiro, J.M.M., Fernandez-Perez, J., Tsumoto, K.
PDB entry 8yxa: Crystal structure of the HSA complex with cefazolin and myristate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-04-02
Authors: Kawai, A.
PDB entry 8yxb: Crystal structure of the HSA complex with ceftriaxone and myristate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-04-02
Authors: Kawai, A.
PDB entry 8yxi: Crystal structure of SFTSV Gn in complex with a neutralizing antibody 40C10
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Severe fever with thrombocytopenia syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-04-02
Authors: Yang, P., Guo, Y., Zhang, N.
PDB entry 8yxk: X-ray structure of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Classification: HYDROLASE
Source organism: Clostridioides difficile (strain 630)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-04-02
Authors: Kamitori, S., Tamai, E.
PDB entry 8yxl: Structure of C-terminal domain of L protein from Mumps virus
Classification: VIRAL PROTEIN
Source organism: Mumps orthorubulavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-04-02
Authors: Li, T.H., Shen, Q.T.
PDB entry 8yxm: Structure of N-terminal domain of L protein bound with Phosphoprotein from Mumps Virus
Classification: VIRAL PROTEIN
Source organism: Mumps orthorubulavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-04-02
Authors: Li, T.H., Shen, Q.T.
PDB entry 8yxn: X-ray structure of Clostridium perfringens autolysin catalytic domain in the P1 form
Classification: HYDROLASE
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-04-02
Authors: Kamitori, S., Tamai, E.
PDB entry 8yxo: Structure of Phosphoprotein tetramer from mumps virus
Classification: VIRAL PROTEIN
Source organism: Mumps orthorubulavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-04-02
Authors: Li, T.H., Shen, Q.T.
PDB entry 8yxp: Structure of mumps virus L protein (state2)
Classification: VIRAL PROTEIN
Source organism: Mumps orthorubulavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-04-02
Authors: Li, T.H., Shen, Q.T.
PDB entry 8yxq: NADPH and 1-benzyl-4-methylpiperidin-3-one complex structure of Imine Reductase wild type from Pochonia chlamydosporia 170
Classification: OXIDOREDUCTASE
Source organism: Pochonia chlamydosporia 170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2024-04-02
Authors: Shi, M., Zheng, G.
PDB entry 8yxr: Structure of Phosphoprotein Tetramer from mumps virus
Classification: VIRAL PROTEIN
Source organism: Mumps orthorubulavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2024-04-02
Authors: Li, T.H., Shen, Q.T.
PDB entry 8yxs: X-ray structure of non-heme iron dioxygenase from Aspergillus brunneoviolaceus
Classification: OXIDOREDUCTASE
Source organism: Aspergillus brunneoviolaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2024-04-02
Authors: Lv, X., Ma, X.
PDB entry 8yxt: Crystal structure of PtmB
Classification: OXIDOREDUCTASE
Source organism: Kitasatospora mediocidica KCTC 9733
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-02
Authors: Zhang, Z.Y., Qu, X.D., Duan, B.R., Wei, G.Z.
PDB entry 8yxu: Crystal structure of CsoS1A/B (modeled with CsoS1A)
Classification: STRUCTURAL PROTEIN
Source organism: Halothiobacillus neapolitanus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-04-03
Authors: Wang, P., Li, J.X., Li, T.P., Li, K., Ng, P.C., Wang, S.M., Chriscoli, V., Basle, A., Marles-Wright, J., Zhang, Y.Z., Liu, L.N.
PDB entry 8yxv: Toxin-antitoxin complex from Streptococcus pneumoniae
Classification: TOXIN
Source organism: Streptococcus pneumoniae TIGR4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2024-04-03
Authors: Kim, D.H., Lee, Y.C., Jin, C., Lee, B.J.
PDB entry 8yxw: TRIP4 ASCH domain in complex with a 12bp dsDNA (5'-TGAGGTACCTCC-3')
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-04-03
Authors: Ding, J., Yang, H., Hu, C.
PDB entry 8yxx: TRIP4 ASCH domain in complex with a 12bp dsDNA (5'-TGAGGTACCTCG-3')
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-04-03
Authors: Ding, J., Yang, H., Hu, C.
PDB entry 8yxy: NADPH and 1-benzyl-4-methylpiperidin-3-one complex structure of Imine Reductase Mutant(M6) from Pochonia chlamydosporia 170
Classification: OXIDOREDUCTASE
Source organism: Pochonia chlamydosporia 170
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2024-04-03
Authors: Shi, M., Zheng, G.
PDB entry 8yxz: Vo domain of V/A-ATPase from Thermus thermophilus state1
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-04-03
Authors: Kishikawa, J., Nishida, Y., Nakano, A., Yokoyama, K.
PDB entry 8yy0: Vo domain of V/A-ATPase from Thermus thermophilus state2
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-04-03
Authors: Kishikawa, J., Nishida, Y., Nakano, A., Yokoyama, K.
PDB entry 8yy1: Vo domain of V/A-ATPase from Thermus thermophilus state3
Classification: MOTOR PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-04-03
Authors: Nishida, Y., Kishikawa, J., Nakano, A., Yokoyama, K.
PDB entry 8yy2: Kinesin-14 in nucleotide-free state bound to 13 PF Microtubule
Classification: CELL CYCLE
Source organism: Drosophila melanogaster; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-04-03
Authors: Shibata, S., Imasaki, T., Shigematsu, H., Endow, S.A., Nitta, R.
PDB entry 8yy3: Kinesin-14 in nucleotide-free state bound to 14 PF Microtubule
Classification: CELL CYCLE
Source organism: Drosophila melanogaster; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-04-03
Authors: Shibata, S., Imasaki, T., Shigematsu, H., Endow, S.A., Nitta, R.
PDB entry 8yy4: Kinesin-14 with AlF3 bound to 13 PF Microtubule
Classification: CELL CYCLE
Source organism: Drosophila melanogaster; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2024-04-03
Authors: Shibata, S., Imasaki, T., Shigematsu, H., Hagio, H., Endow, S.A., Nitta, R.
PDB entry 8yy5: Kinesin-14 with AlF3 bound to 14 PF Microtubule
Classification: CELL CYCLE
Source organism: Drosophila melanogaster; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2024-04-03
Authors: Shibata, S., Imasaki, T., Shigematsu, H., Endow, S.A., Nitta, R.
PDB entry 8yy6: Structure of a murine monoclonal antibody Fab5 targeting Epstein-Barr virus gB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; human gammaherpesvirus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-03
Authors: Fang, X.Y., Sun, C., Zeng, M.S., Liu, Z.
PDB entry 8yy7: Crystal structure of PtmB in complex with cyclo-(L-Trp-L-Trp) and Hypoxanthine
Classification: OXIDOREDUCTASE
Source organism: Kitasatospora mediocidica KCTC 9733
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-04-03
Authors: Zhang, Z.Y., Qu, X.D., Duan, B.R., Wei, G.Z.
PDB entry 8yy8: Fzd7 -Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-04-03
Authors: Chen, B., Xu, L., Han, G.W., Xu, F.
PDB entry 8yy9: Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with magnesium-free solutions.
Classification: PHOTOSYNTHESIS
Source organism: Dinoroseobacter shibae DFL 12 = DSM 16493
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-04-03
Authors: Chen, J.H., Zheng, Q., Zhang, X.
PDB entry 8yya: Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2024-04-03
Authors: Rasheed, S., Arif, R.
PDB entry 8yye: Crystal structure of lipase CTL (Caldibacillus Thermoamylovorans)
Classification: HYDROLASE
Source organism: Caldibacillus thermoamylovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-04-03
Authors: Pan, S.Y., Lan, D.M., Wang, Y.H.
PDB entry 8yyf: RNase J2 mutant H76A
Classification: RNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2024-04-03
Authors: Singh, A.K., Chinnasamy, K., Gopal, B.
PDB entry 8yyg: RNase J2 mutant H78A
Classification: RNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-04-03
Authors: Singh, A.K., Chinnasamy, K., Gopal, B.
PDB entry 8yyh: RNase J2 mutant H144A
Classification: RNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2024-04-03
Authors: Singh, A.K., Chinnasamy, K., Gopal, B.
PDB entry 8yyi: RNase J2 mutant E166A
Classification: RNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-04-03
Authors: Singh, A.K., Chinnasamy, K., Gopal, B.
PDB entry 8yyj: RNase J2 mutant H80A
Classification: RNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-04-03
Authors: Singh, A.K., Chinnasamy, K., Gopal, B.
PDB entry 8yyk: Structure of RNase J2 wild type at room temperature
Classification: RNA BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-04-03
Authors: Singh, A.K., Chinnasamy, K., Gopal, B.
PDB entry 8yyl: Cryo-EM structure of the complex IR with one insulin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2024-04-04
Authors: Xi, Z.
PDB entry 8yym: Cryo-EM structure of cylindrical fiber of MyD88 TIR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-04-04
Authors: Kasai, K., Imamura, K., Narita, A., Makino, F., Miyata, T., Kato, T., Namba, K., Onishi, H., Tochio, H.
PDB entry 8yyn: Crystal structure of TsaGH11 complexed with beta-D-xylopyranose (Data I)
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-04
Authors: Nam, K.H.
PDB entry 8yyo: Crystal structure of TsaGH11 complexed with beta-D-xylopyranose (Data II)
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-04-04
Authors: Nam, K.H.
PDB entry 8yyp: Crystal structure of PtmB in complex with cyclo-(L-Trp-L-Trp) and Adenine
Classification: OXIDOREDUCTASE
Source organism: Kitasatospora mediocidica KCTC 9733
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-04-04
Authors: Zhang, Z.Y., Qu, X.D., Duan, B.R., Wei, G.Z.
PDB entry 8yyq: Structure of the HitB F328L mutant
Classification: LIGASE
Source organism: Embleya scabrispora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-04-04
Authors: Wang, D., Miyanaga, A., Chisuga, T., Kudo, F., Eguchi, T.
PDB entry 8yyr: Structure of the HitB T293G mutant
Classification: LIGASE
Source organism: Embleya scabrispora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-04
Authors: Wang, D., Miyanaga, A., Chisuga, T., Kudo, F., Eguchi, T.
PDB entry 8yys: Cryo-EM structure of the complex IR with two insulin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2024-04-04
Authors: Xi, Z.
PDB entry 8yyt: Cryo-EM structure of the complex IR with four insulin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-04-04
Authors: Xi, Z.
PDB entry 8yyu: A tetrameric STAT1-DNA complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2024-04-04
Authors: Sugiyama, A., Minami, M., Sugita, Y., Ose, T.
PDB entry 8yyv: A dimeric STAT1-DNA complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-04-04
Authors: Sugiyama, A., Minami, M., Sugita, Y., Ose, T.
PDB entry 8yyw: Cryo-EM structure of OXGR1 bound to alpha-ketoglutarate and Gq proteins
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-04-04
Authors: Liu, A., Liu, Y.
PDB entry 8yyx: Cryo-EM structure of OXGR1 bound to leukotriene E4 and Gq proteins
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-04-04
Authors: Liu, A., Liu, Y.
PDB entry 8yyz: Crystal structure of Sonic hedgehog in complex with antibody 5E1 mutant H-R102A in the absence of metals
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-04-04
Authors: Caaveiro, J.M.M., Senoo, A., Kaneda, I., Tsumoto, K.
PDB entry 8yz2: Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with magnesium solutions
Classification: PHOTOSYNTHESIS
Source organism: Dinoroseobacter shibae DFL 12 = DSM 16493
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-04-05
Authors: Chen, J.H., Zheng, Q., Zhang, X.
PDB entry 8yz3: Crystal structure of Type Six Secretion System adaptor protein Tla3 from Pseudomonas aeruginosa.
Classification: UNKNOWN FUNCTION
Source organism: Pseudomonas aeruginosa UCBPP-PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-05
Authors: Chakraborty, B., Datta, S.
PDB entry 8yz5: SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2024-04-06
Authors: Chen, X., Wu, Y.-M.
PDB entry 8yz6: SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.55 Å
Deposited: 2024-04-06
Authors: Chen, X., Wu, Y.-M.
PDB entry 8yz7: Crystal structure of DdrI, a CRP family protein from Deinococcus radiodurans
Classification: TRANSCRIPTION
Source organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-06
Authors: Zhao, Y., Wang, Y.
PDB entry 8yz8: Crystal structure of PtmB in complex with Adenine
Classification: OXIDOREDUCTASE
Source organism: Kitasatospora mediocidica KCTC 9733
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2024-04-06
Authors: Zhang, Z.Y., Qu, X.D., Duan, B.R., Wei, G.Z.
PDB entry 8yza: Crystal structure of PtmB in complex with cyclo-(L-Trp-L-Trp) and Guanine
Classification: OXIDOREDUCTASE
Source organism: Kitasatospora mediocidica KCTC 9733
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-04-06
Authors: Zhang, Z.Y., Qu, X.D., Duan, B.R., Wei, G.Z.
PDB entry 8yzb: BA.2.86 RBD protein in complex with ACE2.
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-04-06
Authors: Wang, Y.J., Zhang, X., Sun, L.
PDB entry 8yzc: Structure of BA.2.86 spike protein in complex with ACE2.
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-04-06
Authors: Wang, Y.J., Zang, X., Sun, L.
PDB entry 8yzd: Structure of JN.1 RBD protein in complex with ACE2.
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-04-06
Authors: Wang, Y.J., Zhang, X., Sun, L.
PDB entry 8yze: The JN.1 spike protein (S) in complex with ACE2.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; synthetic construct; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-04-06
Authors: Wang, Y.J., Zhang, X., Sun, L.
PDB entry 8yzg: Antitoxin protein from S. pneumoniae
Classification: ANTITOXIN
Source organism: Streptococcus pneumoniae TIGR4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-04-06
Authors: Kim, D.H., Kang, S.M., Lee, B.J.
PDB entry 8yzi: The structure of PDCoV RBD and dog APN complex
Classification: ISOMERASE
Source organism: Canis lupus familiaris; Porcine deltacoronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-04-07
Authors: Sun, J.Q., Niu, S.
PDB entry 8yzj: The structure of Banal-52 RBD and hACE2 complex
Classification: ISOMERASE
Source organism: Coronavirinae; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-04-07
Authors: Sun, J.Q., Xu, Z.P.
PDB entry 8yzk: Orphan receptor GPRC5D in complex with scFv150-18
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-04-07
Authors: Yan, P., Lin, X., Xu, F.
PDB entry 8yzl: Solution NMR structure of a RNA duplex formed by C9orf72 GGGGCC repeats
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-04-07
Authors: Yang, Y., Zhang, Y., Guo, P., Han, D.
PDB entry 8yzn: Crystal structural analysis of PaL
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas alcaligenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.799 Å
Deposited: 2024-04-07
Authors: Xu, G., Wu, J.
PDB entry 8yzo: Crystal structural analysis of PaL mutant L297M
Classification: BIOSYNTHETIC PROTEIN
Source organism: Pseudomonas alcaligenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.769 Å
Deposited: 2024-04-07
Authors: Xu, G., Wu, J.
PDB entry 8yzp: Tribolium castaneum ABCH-9C in complex with ceramide(d36:1)
Classification: TRANSPORT PROTEIN
Source organism: Tribolium castaneum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-04-08
Authors: Yang, Q., Chen, J., Zhou, Y.
PDB entry 8yzq: Toxascaris leonina galectin (Tl-gal) W77F/W212F oligomer
Classification: STRUCTURAL PROTEIN
Source organism: Toxascaris leonina
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-04-08
Authors: Ha, M.S., Jang, S.B., Jeong, M.S.
PDB entry 8yzr: The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYNYLYRLL(EG.5.1)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-04-08
Authors: Min, L., Liu, J.
PDB entry 8yzs: Structure of the NACC1 BEN domain in complex with its target DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-04-08
Authors: Ren, J., Wang, Z.
PDB entry 8yzt: Crystal structure of the BANP BEN domain in complex with its target DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-04-08
Authors: Ren, J., Wang, Z.
PDB entry 8yzu: STC truncated SydA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus versicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-04-08
Authors: Fan, A., Fan, S., Wu, M.
PDB entry 8yzw: The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYDYWYRLF(BA.2.86)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-04-08
Authors: Liu, J., Tian, J.M., Shang, B.L.
PDB entry 8yzx: Sesquiterpene synthase SydA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus versicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2024-04-08
Authors: Fan, A., Fan, S., Wu, M.
PDB entry 8yzy: STC SydA mutant - W297Y
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus versicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-04-08
Authors: Fan, A., Fan, S., Wu, M.
PDB entry 8yzz: The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYNYLYRLF(Prototype)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-04-08
Authors: Shang, B.L., Zhang, J.N., Tian, J.M., Liu, J.
PDB entry 8z00: Tribolium castaneum ABCH-9C in complex with LMNG and ceramide(d36:1)
Classification: TRANSPORT PROTEIN
Source organism: Tribolium castaneum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-04-08
Authors: Yang, Q., Chen, J., Zhou, Y.
PDB entry 8z01: Tribolium castaneum ABCH-9C(E224Q) mutant in complex with LMNG and ceramide(d36:1)
Classification: TRANSPORT PROTEIN
Source organism: Tribolium castaneum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-04-08
Authors: Yang, Q., Chen, J., Zhou, Y.
PDB entry 8z02: CoA bound to human GTP-specific succinyl-CoA synthetase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2024-04-08
Authors: Liu, R.L., Ren, X.L., Li, L.T., Zhang, Y., Huang, H., Zhao, Y.M.
PDB entry 8z03: Lactate bound to human GTP-specific succinyl-CoA synthetase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-04-08
Authors: Liu, R.L., Ren, X.L., Li, L.T., Zhang, Y., Huang, H., Zhao, Y.M.
PDB entry 8z05: The structure of HLA-A*0201 complex with peptide from SARS-CoV-2 N222-230 LLLDRLNKL(BA.2.86/JN.1)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-04-09
Authors: Zhang, J.N., Tian, J.M., Liu, J.
PDB entry 8z06: The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYDYWYRSF(JN.1)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2024-04-09
Authors: Tian, J.M., Liu, J.
PDB entry 8z07: The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYNYRYRLF(Delta/BA.5.2)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-04-09
Authors: Yuechao, H., Liu, J.
PDB entry 8z08: The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYNYQYRLF(BA.2.12.1)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-04-09
Authors: Zhang, J.N., Liu, J.
PDB entry 8z0a: Human GYS1-GYG2 complex (apo)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-04-09
Authors: Chen, P.P., Hsia, K.C.
PDB entry 8z0b: Tribolium castaneum ABCH-9C in complex with fenoxycarb
Classification: TRANSPORT PROTEIN
Source organism: Tribolium castaneum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2024-04-09
Authors: Yang, Q., Chen, J., Zhou, Y.
PDB entry 8z0c: Crystal structure of a TetR family regulator AmvR from Acinetobacter Baumannii with spermidine bound
Classification: TRANSCRIPTION
Source organism: Methylococcaceae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2024-04-09
Authors: Yang, B.B., Wang, N.
PDB entry 8z0e: Structure of human Glutamate oxaloacetate transaminase 1 (GOT1) mutant - P15R
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-04-09
Authors: Yang, X.W., Cao, Z., Zang, L., Wang, N.
PDB entry 8z0f: Cryo-EM structure of ATP-bound human very long-chain fatty acid ABC transporter ABCD3
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-04-09
Authors: Li, Y., Chen, Y.X., Zhou, C.Z., Hou, W.T.
PDB entry 8z0g: Crystal structure of NeIle complexed with isoleucine
Classification: FLUORESCENT PROTEIN
Source organism: Branchiostoma lanceolatum; Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-04-09
Authors: Samygina, V.R., Subach, O.M., Vlaskina, A.V., Gabdukhakov, A., Subach, F.V.
PDB entry 8z0h: Crystal structure of 9-mer peptide from ALV-J in complex with BF2*0201
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-04-09
Authors: Jia, Y.S., Ma, M.L., Li, Y.L., Liao, M., Dai, M.M.
PDB entry 8z0i: Tribolium castaneum ABCH-9C(E224Q) mutant in complex with ATP
Classification: TRANSPORT PROTEIN
Source organism: Tribolium castaneum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-04-09
Authors: Yang, Q., Chen, J., Zhou, Y.
PDB entry 8z0j: Tribolium castaneum ABCH-9C(E224Q) mutant complexed with ATP in the presence of fenoxycarb
Classification: TRANSPORT PROTEIN
Source organism: Tribolium castaneum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2024-04-09
Authors: Yang, Q., Chen, J., Zhou, Y.
PDB entry 8z0k: Cryo-EM structure of Cas8-HNH system at full R-loop state
Classification: ANTIVIRAL PROTEIN/DNA/RNA
Source organism: Selenomonas sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2024-04-09
Authors: Zhang, H., Zhu, H., Li, X., Liu, Y.
PDB entry 8z0l: Cryo-EM structure of Cas8-HNH system at partial R-loop state
Classification: ANTIVIRAL PROTEIN/DNA/RNA
Source organism: Selenomonas sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-04-09
Authors: Zhang, H., Zhu, H., Li, X., Liu, Y.