LiteFold/PDB huggingface dataset:
PDB entry 2e3k: Crystal structure of the human Brd2 second bromodomain in complexed with the acetylated histone H4 peptide
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-11-27
Authors: Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e3l: Solution Structure of RSGI RUH-068, a GTF2I domain in human cDNA
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-11-27
Authors: Nezu, Y., Doi-Katayama, Y., Hirota, H., Kurosaki, C., Hayashi, F., Yoshida, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e3m: Crystal structure of CERT START domain
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-11-28
Authors: Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.
PDB entry 2e3n: Crystal structure of CERT START domain in complex with C6-ceramide (P212121)
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-11-28
Authors: Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.
PDB entry 2e3o: Crystal structure of CERT START domain in complex with C16-ceramide (P212121)
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2006-11-28
Authors: Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.
PDB entry 2e3p: Crystal structure of CERT START domain in complex with C16-cearmide (P1)
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-11-28
Authors: Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.
PDB entry 2e3q: Crystal structure of CERT START domain in complex with C18-ceramide (P212121)
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2006-11-28
Authors: Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.
PDB entry 2e3r: Crystal structure of CERT START domain in complex with C18-ceramide (P1)
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-11-28
Authors: Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.
PDB entry 2e3s: Crystal structure of CERT START domain co-crystallized with C24-ceramide (P21)
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2006-11-28
Authors: Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.
PDB entry 2e3t: Crystal structure of rat xanthine oxidoreductase mutant (W335A and F336L)
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2006-11-28
Authors: Asai, R., Nishino, T., Matsumura, T., Okamoto, K., Pai, E.F., Nishino, T.
PDB entry 2e3u: Crystal structure analysis of Dim2p from Pyrococcus horikoshii OT3
Classification: RNA BINDING PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-11-29
Authors: Tanokura, M., Jia, M.Z.
PDB entry 2e3v: Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2006-11-30
Authors: Nishino, A., Saijo, S., Kishishita, S., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e3w: X-ray structure of native RNase A
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2006-11-30
Authors: Boerema, D.J., Tereshko, V.A., Kent, S.B.H.
PDB entry 2e3x: Crystal structure of Russell's viper venom metalloproteinase
Classification: HYDROLASE, BLOOD CLOTTING, TOXIN
Source organism: Daboia russellii siamensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2006-11-30
Authors: Igarashi, T., Takeda, S.
PDB entry 2e3z: Crystal structure of intracellular family 1 beta-glucosidase BGL1A from the basidiomycete Phanerochaete chrysosporium in substrate-free form
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-12-01
Authors: Nijikken, Y., Tsukada, T., Igarashi, K., Samejima, M., Fushinobu, S.
PDB entry 2e40: Crystal structure of intracellular family 1 beta-glucosidase BGL1A from the basidiomycete Phanerochaete chrysosporium in complex with gluconolactone
Classification: HYDROLASE
Source organism: Phanerochaete chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-12-01
Authors: Nijikken, Y., Tsukada, T., Igarashi, K., Samejima, M., Fushinobu, S.
PDB entry 2e41: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with the Reaction Product Analog Biotinol-5'-AMP, Mutations R48A and K111A
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2006-12-01
Authors: Bagautdinov, B., Matsuura, Y., Bagautdinova, S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e42: Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-12-01
Authors: Tahirov, T.H., Inoue-Bungo, T., Sato, K., Shiina, M., Hamada, K., Ogata, K.
PDB entry 2e43: Crystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to A High Affinity DNA fragment
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-12-01
Authors: Tahirov, T.H., Inoue-Bungo, T., Sato, K., Shiina, M., Hamada, K., Ogata, K.
PDB entry 2e44: Solution structure of RNA binding domain in Insulin-like growth factor 2 mRNA binding protein 3
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-04
Authors: Furue, M., Tsuda, K., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e45: Solution structure of Fe65 WW domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-04
Authors: Kouno, T., Mizuguchi, M., Nozawa, Y., Sugaya, T., Kawano, K.
PDB entry 2e46: Crystal Structure Analysis of the clock protein EA4
Classification: METAL BINDING PROTEIN
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-12-05
Authors: Park, S.-Y., Hiraki, T.
PDB entry 2e47: Crystal Structure Analysis of the clock protein EA4 (glycosylation form)
Classification: METAL BINDING PROTEIN
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2006-12-05
Authors: Park, S.-Y., Hiraki, T.
PDB entry 2e48: Crystal Structure of Human D-Amino Acid Oxidase: Substrate-Free Holoenzyme
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-12-05
Authors: Kawazoe, T., Tsuge, H., Imagawa, T., Fukui, K.
PDB entry 2e49: Crystal Structure of Human D-Amino Acid Oxidase in Complex with Imino-Serine
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-12-05
Authors: Kawazoe, T., Tsuge, H., Imagawa, T., Fukui, K.
PDB entry 2e4a: Crystal Structure of Human D-Amino Acid Oxidase in complex with o-aminobenzoate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-12-05
Authors: Kawazoe, T., Tsuge, H., Imagawa, T., Fukui, K.
PDB entry 2e4e: NMR structure of D4P/K7G mutant of GPM12
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2006-12-06
Authors: Terada, T., Satoh, D., Mikawa, T., Ito, Y., Shimizu, K.
PDB entry 2e4f: Crystal Structure of the Cytoplasmic Domain of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.302 Å
Deposited: 2006-12-06
Authors: Inanobe, A., Kurachi, Y.
PDB entry 2e4g: RebH with bound L-Trp
Classification: BIOSYNTHETIC PROTEIN, FLAVOPROTEIN
Source organism: Lechevalieria aerocolonigenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2006-12-07
Authors: Blasiak, L.C., Drennan, C.L.
PDB entry 2e4h: Solution structure of cytoskeletal protein in complex with tubulin tail
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-08
Authors: Mishima, M., Hakoshima, T.
PDB entry 2e4i: Human Telomeric DNA mixed-parallel/antiparallel quadruplex under Physiological Ionic Conditions Stabilized by Proper Incorporation of 8-Bromoguanosines
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2006-12-11
Authors: Matsugami, A., Xu, Y., Noguchi, Y., Sugiyama, H., Katahira, M.
PDB entry 2e4j: Solution Structure of mouse Lipocalin-type Prostaglandin D Synthase
Classification: ISOMERASE
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2006-12-11
Authors: Shimamoto, S., Ohkubo, T.
PDB entry 2e4l: Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1
Classification: HYDROLASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-13
Authors: Tadokoro, T., You, D.J., Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 2e4m: Crystal structure of hemagglutinin subcomponent complex (HA-33/HA-17) from Clostridium botulinum serotype D strain 4947
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2006-12-13
Authors: Hasegawa, K., Watanabe, T., Suzuki, T., Yamano, A., Niwa, K., Ohyama, T.
PDB entry 2e4n: Mutant V251M structure of PH0725 from Pyrococcus horikoshii OT3
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-12-13
Authors: Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e4o: X-ray Crystal Structure of Aristolochene Synthase from Aspergillus terreus and the Evolution of Templates for the Cyclization of Farnesyl Diphosphate
Classification: LYASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-12-15
Authors: Shishova, E.Y., Di Costanzo, L., Cane, D.E., Christianson, D.W.
PDB entry 2e4p: Crystal structure of BphA3 (oxidized form)
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-15
Authors: Senda, M., Kishigami, S., Kimura, S., Ishida, T., Fukuda, M., Senda, T.
PDB entry 2e4q: Crystal structure of BphA3 (reduced form)
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-12-15
Authors: Senda, M., Kishigami, S., Kimura, S., Ishida, T., Fukuda, M., Senda, T.
PDB entry 2e4r: Mutant I253M structure of PH0725 from Pyrococcus horikoshii OT3
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-12-15
Authors: Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e4t: Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Classification: HYDROLASE
Source organism: Clostridium thermocellum
Experimental method: X-RAY DIFFRACTION
Resolution: 0.96 Å
Deposited: 2006-12-16
Authors: Kitago, Y., Karita, S., Watanabe, N., Sakka, K., Tanaka, I.
PDB entry 2e4u: Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with L-glutamate
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2006-12-17
Authors: Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
PDB entry 2e4v: Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with DCG-IV
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-12-17
Authors: Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
PDB entry 2e4w: Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with 1S,3S-ACPD
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-12-17
Authors: Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
PDB entry 2e4x: Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with 1S,3R-ACPD
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2006-12-17
Authors: Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
PDB entry 2e4y: Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with 2R,4R-APDC
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2006-12-17
Authors: Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
PDB entry 2e4z: Crystal structure of the ligand-binding region of the group III metabotropic glutamate receptor
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2006-12-17
Authors: Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
PDB entry 2e50: Crystal structure of SET/TAF-1beta/INHAT
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-12-18
Authors: Muto, S., Senda, M., Senda, T., Horikoshi, M.
PDB entry 2e51: Crystal structure of basic winged bean lectin in complex with A blood group disaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-12-18
Authors: Kulkarni, K.A., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2e52: Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolution
Classification: hydrolase/DNA
Source organism: Haemophilus influenzae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-18
Authors: Watanabe, N., Sato, C., Tanaka, I.
PDB entry 2e53: Crystal structure of basic winged bean lectin in complex with B blood group disaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-12-18
Authors: Kulkarni, K.A., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2e54: Crystal structure of acetylornithine aminotransferase from Thermotoga maritima
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-12-19
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e55: Structure of AQ2163 protein from Aquifex aeolicus
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2006-12-19
Authors: Lokanath, N.K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e56: Crystal structure of human MD-2
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-19
Authors: Ohto, U., Satow, Y.
PDB entry 2e59: Crystal structure of human MD-2 in complex with lipid IVa
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2006-12-19
Authors: Ohto, U., Satow, Y.
PDB entry 2e5a: Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-AMP
Classification: LIGASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-12-19
Authors: Fujiwara, K., Hosaka, H., Matsuda, M., Suzuki, M., Nakagawa, A.
PDB entry 2e5b: Crystal structure of Human NMPRTase as free-form
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-20
Authors: Takahashi, R., Nakamura, S., Kobayashi, Y., Ohkubo, T.
PDB entry 2e5c: Crystal structure of Human NMPRTase complexed with 5'-phosphoribosyl-1'-pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-12-20
Authors: Takahashi, R., Nakamura, S., Kobayashi, Y., Ohkubo, T.
PDB entry 2e5d: Crystal structure of Human NMPRTase complexed with nicotinamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-20
Authors: Takahashi, R., Nakamura, S., Kobayashi, Y., Ohkubo, T.
PDB entry 2e5e: Solution Structure of Variable-type Domain of Human Receptor for Advanced Glycation Endproducts
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-20
Authors: Matsumoto, S., Yoshida, T., Yasumatsu, I., Yamamoto, H., Kobayashi, Y., Ohkubo, T.
PDB entry 2e5f: Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with phosphate ion
Classification: Structural Genomics, Unknown Function
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2006-12-20
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5g: Solution structure of RNA binding domain in RNA binding motif protein 21
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-21
Authors: Tsuda, K., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5h: Solution structure of RNA binding domain in Zinc finger CCHC-type and RNA binding motif 1
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-21
Authors: Iibuchi, H., Tsuda, K., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5i: Solution structure of RNA binding domain 2 in Heterogeneous nuclear ribonucleoprotein L-like
Classification: GENE REGULATION
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2006-12-21
Authors: Tsuda, K., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5j: Solution structure of RNA binding domain in Methenyltetrahydrofolate synthetase domain containing
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-21
Authors: Tsuda, K., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5k: Solution structure of SH3 domain in Suppressor of T-cell receptor signaling 1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-21
Authors: Sukegawa, S., Tsuda, K., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5l: A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction
Classification: RIBOSOME
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2006-12-21
Authors: Kaminishi, T., Wilson, D.N., Takemoto, C., Harms, J.M., Kawazoe, M., Schluenzen, F., Hanawa-Suetsugu, K., Shirouzu, M., Fucini, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5m: Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain 7
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii str. 7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-12-22
Authors: Kouyama, T., Kondo, H.
PDB entry 2e5n: Solution structure of the ELL_N2 domain of target of RNA polymerase II elongation factor ELL2
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-22
Authors: Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5o: 'Solution structure of the TRIP_4C domain of target of activating signal cointegrator 1
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-22
Authors: Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5p: Solution structure of the TUDOR domain of PHD finger protein 1 (PHF1 protein)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-22
Authors: Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5q: Solution structure of the TUDOR domain of PHD finger protein 19, isoform b [Homo sapiens]
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-22
Authors: Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5r: Solution structure of the ZZ domain of Dystrobrevin alpha (Dystrobrevin-alpha)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-22
Authors: Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5s: Solution structure of the zf-CCCHx2 domain of muscleblind-like 2, isoform 1 [Homo sapiens]
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-22
Authors: Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5t: C-terminal domain of Epsilon subunit of F1F0-ATP synthase from the Thermophilic bacillus PS3 in the presence of ATP condition
Classification: HYDROLASE
Source organism: Bacillus sp. PS3
Experimental method: SOLUTION NMR
Deposited: 2006-12-22
Authors: Yagi, H., Akutsu, H.
PDB entry 2e5u: C-terminal domain of Epsilon subunit of F1F0-ATP synthase from the Thermophilic Bacillus PS3
Classification: HYDROLASE
Source organism: Bacillus sp. PS3
Experimental method: SOLUTION NMR
Deposited: 2006-12-25
Authors: Yagi, H., Akutsu, H.
PDB entry 2e5v: Crystal structure of L-Aspartate Oxidase from hyperthermophilic archaeon Sulfolobus tokodaii
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2006-12-25
Authors: Yoneda, K., Sakuraba, H., Asai, I., Tsuge, H., Katunuma, N., Ohshima, T.
PDB entry 2e5w: Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-25
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5x: Structure of nucleotide triphosphate pyrophosphatase from pyrococcus horikoshii OT3
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-25
Authors: Mizutani, H., Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e5y: Epsilon subunit and ATP complex of F1F0-ATP synthase from the Thermophilic Bacillus PS3
Classification: HYDROLASE
Source organism: Bacillus sp. PS3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2006-12-25
Authors: Yagi, H., Akutsu, H.
PDB entry 2e5z: Solution structure of the surp2 domain in splicing factor, arginine/serine-rich 8
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-25
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e60: Solution structure of the surp1 domain in splicing factor, arginine/serine-rich 8
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-25
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e61: Solution structure of the zf-CW domain in zinc finger CW-type PWWP domain protein 1
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-25
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e62: Solution structure of the cwf21 domain in protein AAK25922
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2006-12-25
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e63: Solution structure of the NEUZ domain in KIAA1787 protein
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-25
Authors: He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e64: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii, Mutations R48A and K111A
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-12-25
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e65: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3, Mutation D104A
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-12-25
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e66: Crystal Structure Of CutA1 From Pyrococcus Horikoshii OT3, Mutation D60A
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-25
Authors: Bagautdinov, B., Sawano, M., Bagautdinova, S., Yutani, K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e67: Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-12-26
Authors: Imagawa, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e68: Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with dihydroorotate
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2006-12-26
Authors: Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.
PDB entry 2e69: Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 in complex with sulfate
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-12-26
Authors: Iwasaki, W., Miki, K.
PDB entry 2e6a: Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with orotate
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2006-12-26
Authors: Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.
PDB entry 2e6b: Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 in complex with magnesium and tungstate
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-12-26
Authors: Iwasaki, W., Miki, K.
PDB entry 2e6c: Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 cocrystallized with manganese and AMP
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2006-12-26
Authors: Iwasaki, W., Miki, K.
PDB entry 2e6d: Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with fumarate
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2006-12-26
Authors: Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.
PDB entry 2e6e: Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-12-26
Authors: Iwasaki, W., Miki, K.
PDB entry 2e6f: Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with oxonate
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2006-12-26
Authors: Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.
PDB entry 2e6g: Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 in complex with phosphate
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-12-26
Authors: Iwasaki, W., Miki, K.
PDB entry 2e6h: Crystal structure of E37A mutant of the stationary phase survival protein SurE from Thermus thermophilus HB8 cocrystallized with manganese and AMP
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-12-26
Authors: Iwasaki, W., Miki, K.
PDB entry 2e6i: Solution structure of the BTK motif of tyrosine-protein kinase ITK from human
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-27
Authors: Li, H., Tochio, N., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6j: Solution structure of the C-terminal PapD-like domain from human HYDIN protein
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-27
Authors: Li, H., Sato, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6k: X-ray structure of Thermus thermopilus HB8 TT0505
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2006-12-27
Authors: Yoshida, H., Kamitori, S., Agari, Y., Iino, H., Kanagawa, M., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6l: structure of mouse WRN exonuclease domain
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-12-27
Authors: Cho, Y., Choi, J.M.
PDB entry 2e6m: structure of mouse werner exonuclease domain
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-12-27
Authors: Cho, Y., Choi, J.M.
PDB entry 2e6n: Solution structure of the TUDOR domain of Staphylococcal nuclease domain-containing protein 1
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-27
Authors: Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6o: Solution structure of the HMG box domain from human HMG-box transcription factor 1
Classification: TRANSCRIPTION, CELL CYCLE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-28
Authors: Qin, X.R., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6p: Solution structure of the Ig-like domain (714-804) from human Obscurin-like protein 1
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-28
Authors: Qin, X.R., Suetake, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6q: Solution structure of the Ig-like domain (615-713) from human Obscurin-like protein 1
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-28
Authors: Qin, X.R., Suetake, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6r: Solution structure of the PHD domain in SmcY protein
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-28
Authors: Kadirvel, S., He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6s: Solution structure of the PHD domain in RING finger protein 107
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-12-28
Authors: Kadirvel, S., He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6u: Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-01-03
Authors: Kitago, Y., Min, Y., Watanabe, N., Tanaka, I.
PDB entry 2e6v: Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man3GlcNAc-bound form
Classification: PROTEIN TRANSPORT
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-01-04
Authors: Satoh, T., Kato, R., Wakatsuki, S.
PDB entry 2e6w: Solution structure and calcium binding properties of EF-hands 3 and 4 of calsenilin
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-05
Authors: Yu, L., Sun, C., Mendoza, R., Hebert, E., Pereda-Lopez, A., Hajduk, P.J., Olejniczak, E.T.
PDB entry 2e6x: X-ray structure of TT1592 from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2007-01-05
Authors: Yamada, M., Nakagawa, N., Kanagawa, M., Kuramitsu, S., Kamitori, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e6y: Covalent complex of orotidine 5'-monophosphate decarboxylase (ODCase) with 6-Iodo-UMP
Classification: LYASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2007-01-05
Authors: Fujihashi, M., Bello, A.M., Kotra, L.P., Pai, E.F.
PDB entry 2e6z: Solution structure of the second KOW motif of human transcription elongation factor SPT5
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-05
Authors: Tanabe, W., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e70: Solution structure of the fifth KOW motif of human transcription elongation factor SPT5
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-05
Authors: Tanabe, W., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e71: Solution structure of the second FF domain of human transcription factor CA150
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-05
Authors: Tanabe, W., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e72: Solution structure of the zinc finger domain of human KIAA0461
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-05
Authors: Tanabe, W., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e73: Solution structure of the phorbol esters/diacylglycerol binding domain of protein kinase C gamma
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-05
Authors: Tanabe, W., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e74: Crystal Structure of the Cytochrome b6f Complex from M.laminosus
Classification: PHOTOSYNTHESIS
Source organism: Mastigocladus laminosus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2007-01-05
Authors: Cramer, W.A., Yamashita, E., Zhang, H.
PDB entry 2e75: Crystal Structure of the Cytochrome b6f Complex with 2-nonyl-4-hydroxyquinoline N-oxide (NQNO) from M.laminosus
Classification: PHOTOSYNTHESIS
Source organism: Mastigocladus laminosus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2007-01-05
Authors: Cramer, W.A., Yamashita, E., Zhang, H.
PDB entry 2e76: Crystal Structure of the Cytochrome b6f Complex with tridecyl-stigmatellin (TDS) from M.laminosus
Classification: PHOTOSYNTHESIS
Source organism: Mastigocladus laminosus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2007-01-05
Authors: Cramer, W.A., Yamashita, E., Zhang, H.
PDB entry 2e77: Crystal structure of L-lactate oxidase with pyruvate complex
Classification: OXIDOREDUCTASE
Source organism: Aerococcus viridans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-01-06
Authors: Morimoto, Y.
PDB entry 2e7a: TNF Receptor Subtype One-selective TNF Mutant with Antagonistic Activity
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-01-09
Authors: Mukai, Y., Yamagata, Y., Tsutsumi, Y.
PDB entry 2e7b: Solution structure of the 6th Ig-like domain from human KIAA1556
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-09
Authors: Qin, X.R., Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7c: Solution structure of the 6th Ig-like domain from human Myosin-binding protein C, fast-type
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-09
Authors: Qin, X.R., Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7d: Crystal structure of a NEAT domain from Staphylococcus aureus
Classification: METAL BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-01-09
Authors: Suenaga, A., Tanaka, Y., Yao, M., Kumagai, I., Tanaka, I., Tsumoto, K.
PDB entry 2e7e: Bent-binding of cyanide to the heme iron in rat heme oxygenase-1
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2007-01-09
Authors: Sugishima, M., Fukuyama, K.
PDB entry 2e7f: 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.2 Angsrom resolution
Classification: TRANSFERASE
Source organism: Moorella thermoacetica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2007-01-09
Authors: Doukov, T.I., Drennan, C.L., Hemmi, H., Ragsdale, S.W.
PDB entry 2e7g: Solution structure of putative ribosome-binding factor A (RbfA) from human mutochondrial precursor
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-09
Authors: Furue, M., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7h: Solution structure of the second fn3 domain from human Ephrin type-B receptor 4
Classification: TRANSFERASE, SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-10
Authors: Qin, X.R., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7i: Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
Classification: LYASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2007-01-10
Authors: Fukunaga, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7j: Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
Classification: LYASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2007-01-10
Authors: Fukunaga, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7k: Solution structure of the PDZ domain from Human MAGUK p55 subfamily member 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-10
Authors: Qin, X.R., Kurosaki, C., Yoshida, M., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7l: Structure of a high-affinity mutant of the 2C TCR in complex with Ld/QL9
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2007-01-11
Authors: Garcia, K.C., Colf, L.A.
PDB entry 2e7m: Solution structure of the PKD domain (329-428) from human KIAA0319
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-11
Authors: Qin, X.R., Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7n: Solution structure of the second Bromodomain from human Bromodomain-containing protein 3
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-11
Authors: Qin, X.R., Kurosaki, C., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7o: Solution structure of the Bromodomain from human Bromodomain adjacent to zinc finger domain 2B
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2007-01-11
Authors: Qin, X.R., Kurosaki, C., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7p: Crystal structure of the holo form of glutaredoxin C1 from populus tremula x tremuloides
Classification: ELECTRON TRANSPORT
Source organism: Populus tremula x Populus tremuloides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2007-01-12
Authors: Unno, H., Takahashi, T., Kawakami, T., Aimoto, S., Hase, T., Kusunoki, M., Rouhier, N., Jacquot, J.P.
PDB entry 2e7q: Crystal structure of basic winged bean lectin in complex with b blood group trisaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2007-01-12
Authors: Kulkarni, K.A., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2e7r: Crystal structure of Glu54 to Arg mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-01-12
Authors: Mizutani, H., Matsuura, Y., Krishna Swamy, B.S., Simanshu, D.K., Murthy, M.R.N., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7s: Crystal structure of the yeast Sec2p GEF domain
Classification: ENDOCYTOSIS/EXOCYTOSIS
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2007-01-12
Authors: Fukai, S., Sato, Y., Nureki, O.
PDB entry 2e7t: Crystal structure of basic winged bean lectin in complex with a blood group trisaccharide
Classification: SUGAR BINDING PROTEIN
Source organism: Psophocarpus tetragonolobus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2007-01-13
Authors: Kulkarni, K.A., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.
PDB entry 2e7u: Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Thermus thermophilus HB8
Classification: ISOMERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2007-01-14
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7v: Crystal structure of SEA domain of transmembrane protease from Mus musculus
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2007-01-15
Authors: Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Shirozu, M., Yokoyama, S., Chen, L., Liu, Z.J., Wang, B.C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7w: Crystal structure of the Lrp/AsnC like transcriptional regulators from Sulfolobus tokodaii 7
Classification: TRANSCRIPTION REGULATOR
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2007-01-15
Authors: Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7x: Structure of the Lrp/AsnC like transcriptional regulator from Sulfolobus tokodaii 7 complexed with its cognate ligand
Classification: TRANSCRIPTION REGULATOR
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2007-01-15
Authors: Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2e7y: High resolution structure of T. maritima tRNase Z
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2007-01-15
Authors: Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)