LiteFold/PDB huggingface dataset:
PDB entry 8k0u: Crystal structure of theophylline DNA aptamer bound to hypoxanthine
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-07-10
Authors: Huang, Y., Lin, X., Huang, L.
PDB entry 8k0v: Crystal structure of theophylline DNA aptamer bound to 3-methylxanthine
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2023-07-10
Authors: Huang, Y., Lin, X., Huang, L.
PDB entry 8k0w: Crystal structure of theophylline DNA aptamer bound to theophylline, soaked in Selenourea
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-07-10
Authors: Huang, Y., Lin, X., Huang, L.
PDB entry 8k0x: ABCG25 Wild Type purified with DDM in the ABA-bound state
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-10
Authors: Sun, L., Liu, X., Ying, W., Liao, L., Wei, H.
PDB entry 8k0y: Crystal structure of a medaka mascRNA U23G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2023-07-10
Authors: He, Y., Deng, J., Lin, X., Huang, L.
PDB entry 8k0z: ABCG25 Wild Type purified with DDM in the apo-state
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-07-10
Authors: Sun, L., Liu, X., Ying, W., Liao, L., Wei, H.
PDB entry 8k10: SID1 transmembrane family member 2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-10
Authors: Guo, H., Qi, C., Lu, Y., Yang, H., Zhu, Y., Sun, F., Ji, X.
PDB entry 8k11: SID1 transmembrane family member 2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-10
Authors: Guo, H., Qi, C., Lu, Y., Yang, H., Zhu, Y., Sun, F., Ji, X.
PDB entry 8k12: SID1 transmembrane family member 2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-10
Authors: Guo, H., Qi, C., Lu, Y., Yang, H., Zhu, Y., Sun, F., Ji, X.
PDB entry 8k13: SID1 transmembrane family member 1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-07-10
Authors: Guo, H., Qi, C., Lu, Y., Yang, H., Zhu, Y., Sun, F., Ji, X.
PDB entry 8k14: X-ray crystal structure of 18a in BRD4(1)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-07-10
Authors: Xu, H., Shen, H., Zhang, Y., Xu, Y., Li, R.
PDB entry 8k15: The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Classification: RNA
Source organism: Streptococcus azizii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2023-07-10
Authors: Zhu, H.Z., Liu, J.J.G.
PDB entry 8k16: KtrA bound with ATP and thallium
Classification: METAL TRANSPORT
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-07-10
Authors: Chiang, W.T., Chang, Y.K., Hu, N.J., Tsai, M.D.
PDB entry 8k17: Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, bound to collagen alpha-1(I) chain
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-07-10
Authors: Li, W., Peng, J., Yao, D., Rao, B., Xia, Y., Wang, Q., Li, S., Cao, M., Shen, Y., Ma, P., Liao, R., Qin, A., Zhao, J., Cao, Y.
PDB entry 8k18: Neutralization antibody ZCP4C9 bound with SARS-CoV-2 Omicron BA.5 RBD
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-07-10
Authors: Tang, B., Dang, S.
PDB entry 8k19: Neutralization antibody ZCP3B4 bound with SARS-CoV-2 Omicron BA.5 RBD
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-07-10
Authors: Tang, B., Dang, S.
PDB entry 8k1a: the wild-typed alpha-galactosidase 5
Classification: HYDROLASE
Source organism: Blautia pseudococcoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-07-10
Authors: Li, Y.W., Ru, Y.X.
PDB entry 8k1b: SID1 transmembrane family member 1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-07-10
Authors: Guo, H., Qi, C., Lu, Y., Yang, H., Zhu, Y., Sun, F., Ji, X.
PDB entry 8k1c: Structural insight into the role of acetyl-CoA acetyltransferase from Fusobacterium nucleatum
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Experimental method: X-RAY DIFFRACTION
Resolution: 1.894 Å
Deposited: 2023-07-10
Authors: He, S.R., Bai, X., Zhang, J., Zhao, Z.D.
PDB entry 8k1d: SID1 transmembrane family member 1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2023-07-10
Authors: Guo, H., Qi, C., Lu, Y., Yang, H., Zhu, Y., Sun, F., Ji, X.
PDB entry 8k1e: Crystal structure of a human menRNA
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-07-11
Authors: He, Y., Deng, J., Lin, X., Huang, L.
PDB entry 8k1f: Crystal Structure of TrmR from Fusobacterium nucleatum
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-07-10
Authors: He, S.R., Bai, X., Zhang, J., Zhao, Z.D.
PDB entry 8k1g: Crystal structure of ethylene glycol-bound glycerol dehydrogenase from Klebsiella pneumoniae
Classification: OXIDOREDUCTASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-07-10
Authors: Kang, W.
PDB entry 8k1h: Crystal structure of ethylene glycol-bound glycerol dehydrogenase from Klebsiella pneumoniae
Classification: OXIDOREDUCTASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-10
Authors: Kang, W.
PDB entry 8k1i: Crystal structure of arabinose dehydrogenase from Candida auris
Classification: OXIDOREDUCTASE
Source organism: [Candida] auris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-11
Authors: Zhang, J., Bai, X., He, S.R., Zhao, Z.D.
PDB entry 8k1j: Human TWIK-related acid-sensitive potassium channel TASK3 at pH 7.4,200 mM KCl
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-11
Authors: Chen, S., Lin, H.
PDB entry 8k1k: KtrA bound with ATP and sodium
Classification: METAL BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-07-11
Authors: Chiang, W.T., Chang, Y.K., Hu, N.J., Tsai, M.D.
PDB entry 8k1l: Cryo-EM structure of Na+,K+-ATPase alpha2 from Artemia salina in cation-free E2P form
Classification: TRANSPORT PROTEIN
Source organism: Artemia salina
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-07-11
Authors: Abe, K., Artigas, P.
PDB entry 8k1m: mycobacterial efflux pump, apo state
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-11
Authors: Wang, Y., Wu, F., Zhang, L., Rao, Z.
PDB entry 8k1n: mycobacterial efflux pump, substrate-bound state
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-11
Authors: Wang, Y., Wu, F., Zhang, L., Rao, Z.
PDB entry 8k1o: mycobacterial efflux pump, AMPPNP bound state
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-11
Authors: Wang, Y., Wu, F., Zhang, L., Rao, Z.
PDB entry 8k1p: mycobacterial efflux pump, ADP+vanadate bound state
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-11
Authors: Wang, Y., Wu, F., Zhang, L., Rao, Z.
PDB entry 8k1q: Human TWIK-related acid-sensitive potassium channel TASK3 at pH 6.0, 5 mM KCl and 135 mM NaCl
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-07-11
Authors: Chen, S., Lin, H.
PDB entry 8k1r: YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium pollutisoli; Spirochaeta thermophila DSM 6578
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-11
Authors: Ikei, M., Miyazaki, R., Monden, K., Naito, Y., Takeuchi, A., Takahashi, Y.S., Tanaka, Y., Ichikawa, M., Tsukazaki, T.
PDB entry 8k1s: Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-07-11
Authors: Chang, Y.K., Chiang, W.T., Hu, N.J., Tsai, M.D.
PDB entry 8k1t: Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of MgCl2
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2023-07-11
Authors: Chang, Y.K., Chiang, W.T., Hu, N.J., Tsai, M.D.
PDB entry 8k1u: Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2023-07-11
Authors: Chang, Y.K., Chiang, W.T., Hu, N.J., Tsai, M.D.
PDB entry 8k1v: Human TWIK-related acid-sensitive potassium channel TASK3 at pH 7.4, 5 mM KCl and 135 mM NaCl
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2023-07-11
Authors: Chen, S., Lin, H.
PDB entry 8k1w: Crystal structure of PLA2 from Saccharothrix espanaensis
Classification: HYDROLASE
Source organism: Saccharothrix espanaensis DSM 44229
Experimental method: X-RAY DIFFRACTION
Resolution: 1.30193 Å
Deposited: 2023-07-11
Authors: Zhang, Z.M., Wang, F.
PDB entry 8k1x: Biochemical and structural characterization of a multifunctional cytochrome P450 SpcN in staurosporine biosynthesis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sanyensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-07-11
Authors: Xiao, F., Dong, S., Feng, Y., Li, W.
PDB entry 8k1y: Crystal structure of human serum albumin and ruthenium Val complex adduct
Classification: STRUCTURAL GENOMICS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-07-11
Authors: Gong, W.J., Xie, L.L., Wang, W.M., Wang, H.F.
PDB entry 8k1z: Human TWIK-related acid-sensitive potassium channel TASK3 at pH 6.0, 200 mM KCl
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-07-11
Authors: Chen, S., Lin, H.
PDB entry 8k20: Cryo-EM structure of KEOPS complex from Arabidopsis thaliana
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-07-11
Authors: Zheng, X.X., Zhu, L., Duan, L., Zhang, W.H.
PDB entry 8k21: Cas1-Cas2-dsDNA subregion in ICP1 Csy-DNA-Cas1-2/3 complex
Classification: ANTIBIOTIC/RNA BINDING PROTEIN/DNA
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k22: ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (half form)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k23: ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k24: ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form), C2 symmetry
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k25: Structure of Cas1-Cas2-dsDNA complex
Classification: ANTIBIOTIC
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k26: Structure of Cas1-Cas2 complex
Classification: ANTIBIOTIC
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k27: ICP1 Csy-dsDNA complex (partial duplex)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k28: ICP1 Csy-dsDNA complex (form 1)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k29: ICP1 Csy-dsDNA complex (form 2)
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Vibrio phage ICP1_2004_A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-07-12
Authors: Zhang, L.X., Feng, Y.
PDB entry 8k2a: Cryo-EM structure of the human 55S mitoribosome with Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-12
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8k2b: Cryo-EM structure of the human 39S mitoribosome with Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-12
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8k2c: Cryo-EM structure of the human 80S ribosome with Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-07-12
Authors: Li, X., Wang, M., Cheng, J.
PDB entry 8k2d: Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-12
Authors: Buschauer, R., Beckmann, R., Cheng, J.
PDB entry 8k2e: Crystal structure of YTHDC1 and Y3 complex
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-07-12
Authors: Zhang, H.L., Yang, S.Y.
PDB entry 8k2f: Crystal structure of Group 1 oligosaccharide-releasing beta-N-acetylgalactosaminidase NgaCa from Cohnella abietis, apo 1 form
Classification: HYDROLASE
Source organism: Cohnella abietis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2g: Crystal structure of Group 1 Oligosaccharide-releasing beta-N-acetylgalactosaminidase NgaCa from Cohnella abietis, apo 2 form
Classification: HYDROLASE
Source organism: Cohnella abietis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2h: Crystal structure of Group 2Oligosaccharide/Monosaccharide-releasing beta-N-acetylhexosaminidase NgaAt from Arabidopsis thaliana in complex with GalNAc-thiazoline
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2i: Crystal structure of Group 2 Oligosaccharide/Monosaccharide-releasing beta-N-acetylhexosaminidase NgaAt from Arabidopsis thaliana in complex with GlcNAc-thiazoline
Classification: HYDROLASE
Source organism: Arabidopsis thaliana x Arabidopsis lyrata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2j: Crystal structure of Group 3 Oligosaccharide/Monosaccharide-releasing beta-N-acetylgalactosaminidase NgaDssm, apo form
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2k: Crystal structure of Group 3 Oligosaccharide/Monosaccharide-releasing beta-N-acetylgalactosaminidase NgaDssm in complex with GalNAc-thiazoline
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2l: Crystal structure of Group 4 Monosaccharide-releasing beta-N-acetylgalactosaminidase NgaP2 from Paenibacillus sp. TS12, apo form
Classification: HYDROLASE
Source organism: Paenibacillus sp. TS12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2m: Crystal structure of Group 4 Monosaccharide-releasing beta-N-acetylgalactosaminidase NgaP2 from Paenibacillus sp. TS12 in complex with GalNAc-thiazoline
Classification: HYDROLASE
Source organism: Paenibacillus sp. TS12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2n: Crystal structure of Group 4 Monosaccharide-releasing beta-N-acetylgalactosaminidase NgaLy from Lacticaseibacillus yichunensis, apo form
Classification: HYDROLASE
Source organism: Lacticaseibacillus yichunensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-07-12
Authors: Sumida, T., Fushinobu, S.
PDB entry 8k2o: Crystal structure of Fhb7-M10
Classification: TRANSFERASE
Source organism: Thinopyrum elongatum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-07-13
Authors: Yang, J., Lei, X.G., Xiao, J.Y.
PDB entry 8k2p: Crystal structure of CtGST-F76A
Classification: TRANSFERASE
Source organism: Colletotrichum tofieldiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-13
Authors: Yang, J., Xiao, J.Y., Lei, X.G.
PDB entry 8k2r: The structure of HtpG M domain in complex with unstructured D131D binding site b
Classification: CHAPERONE
Source organism: Escherichia coli; Staphylococcus aureus
Experimental method: SOLUTION NMR
Deposited: 2023-07-13
Authors: Qu, X., Huang, C.
PDB entry 8k2s: The structure of HtpG M domain in complex with unstructured D131D binding site a
Classification: CHAPERONE
Source organism: Escherichia coli; Staphylococcus aureus
Experimental method: SOLUTION NMR
Deposited: 2023-07-13
Authors: Qu, X., Huang, C.
PDB entry 8k2t: Solution structure of full-length HtpG in complex with D131D
Classification: CHAPERONE
Source organism: Escherichia coli; Staphylococcus aureus
Experimental method: SOLUTION NMR
Deposited: 2023-07-13
Authors: Qu, X., Huang, C.
PDB entry 8k2v: 3-Methylcrotonyl-CoA Carboxylase in MCCD state with Acetyl CoA
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-07-13
Authors: Liu, D.S., Su, J.Y., Tian, X.Y.
PDB entry 8k2w: Structure of CXCR3 complexed with antagonist AMG487
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-14
Authors: Jiao, H.Z., Hu, H.L.
PDB entry 8k2x: CXCR3-DNGi complex activated by CXCL10
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Oplophorus gracilirostris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-14
Authors: Jiao, H.Z., Hu, H.L.
PDB entry 8k2y: Crystal structure of MucD
Classification: HYDROLASE
Source organism: Pseudomonas syringae pv. syringae FF5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-07-14
Authors: Kim, J.H., Park, H.H.
PDB entry 8k2z: Crystal structure of a human mascRNA A2G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-07-14
Authors: He, Y., Deng, J., Lin, X., Huang, L.
PDB entry 8k30: Crystal structure of a medaka mascRNA U23G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-07-14
Authors: He, Y., Deng, J., Lin, X., Huang, L.
PDB entry 8k31: The complex of WRKY33 C terminal DBD and SIB1
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana
Experimental method: SOLUTION NMR
Deposited: 2023-07-14
Authors: Dong, X., Gong, Z., Hu, Y.F.
PDB entry 8k32: The complex structure of SLKARI with NADH at 2.12-angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-07-14
Authors: Chen, C.Y., Huang, C.H.
PDB entry 8k33: SOD1 and Nanobody1 complex
Classification: OXIDOREDUCTASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2023-07-14
Authors: Cheng, S.
PDB entry 8k34: Cryo-EM structure of SPARTA gRNA binary complex
Classification: STRUCTURAL PROTEIN/RNA
Source organism: Thermoflavifilum thermophilum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-07-14
Authors: Zhang, J.T., Jia, N.
PDB entry 8k35: Structure of the bacteriophage lambda tail tip complex
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-07-14
Authors: Xiao, H., Tan, L., Cheng, L.P., Liu, H.R.
PDB entry 8k36: Structure of the bacteriophage lambda tail tube
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2023-07-14
Authors: Xiao, H., Tan, L., Cheng, L.P., Liu, H.R.
PDB entry 8k37: Structure of the bacteriophage lambda neck
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-14
Authors: Xiao, H., Tan, L., Cheng, L.P., Liu, H.R.
PDB entry 8k38: The structure of bacteriophage lambda portal-adaptor
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-14
Authors: Xiao, H., Tan, L., Cheng, L.P., Liu, H.R.
PDB entry 8k39: Structure of the bacteriophage lambda portal vertex
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Lambda
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-07-14
Authors: Xiao, H., Tan, L., Cheng, L.P., Liu, H.R.
PDB entry 8k3a: SOD1 and Nanobody2 complex
Classification: OXIDOREDUCTASE/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-07-14
Authors: Cheng, S.
PDB entry 8k3b: The Pseudomonas aeruginosa RccR protein complexed with KDPG
Classification: GENE REGULATION
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-14
Authors: Wang, Y.J., Wu, Z.W., Ji, Q.J.
PDB entry 8k3c: Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Henipavirus nipahense; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-07-15
Authors: Sun, M.M.
PDB entry 8k3d: Crystal structure of NRF1 DBD bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-15
Authors: Li, W.F., Liu, K., Min, J.R.
PDB entry 8k3f: Crystal structure of the recombination mediator protein RecR from Campylobacter jejuni
Classification: RECOMBINATION
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.603 Å
Deposited: 2023-07-15
Authors: Lee, S.J., Yoon, S.I.
PDB entry 8k3g: Crystal structure of non-specific phospholipase C RePLC (Rasamsonia emersonii)
Classification: HYDROLASE
Source organism: Rasamsonia emersonii CBS 393.64
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-07-15
Authors: Feng, C.H., Wang, Y.H.
PDB entry 8k3h: Cryo-EM structure of PseP with NAD at 2.86 angstrom resolution
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-07-15
Authors: Mori, T., Awakawa, T., Adachi, N., Abe, I.
PDB entry 8k3i: Cryo-EM structure of PseP apo
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-07-15
Authors: Mori, T., Awakawa, T., Adachi, N., Abe, I.
PDB entry 8k3j: Structure of human CNTN2 immunoglobulin domains 1-6 homo-dimer
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-16
Authors: Zhang, Z.Z.
PDB entry 8k3k: The crystal structure of nanobody Nb4 in complex with receptor binding domain (RBD) of BA.1 Spike protein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-07-16
Authors: Wang, H.Y., Xu, W.Q.
PDB entry 8k3l: SOD1 and Nanobody3 complex
Classification: OXIDOREDUCTASE/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-16
Authors: Cheng, S., Liu, R., Ding, Y.
PDB entry 8k3m: Solution NMR structure of trans X-Pro peptide bond conformer of a single disulfide conopeptide Mo1853
Classification: TOXIN
Source organism: Conus monile
Experimental method: SOLUTION NMR
Deposited: 2023-07-16
Authors: Kancherla, A.K., Sarma, S.P.
PDB entry 8k3n: Solution NMR structure of cis X-Pro peptide bond conformer of a single disulfide conopeptide Mo1853
Classification: TOXIN
Source organism: Conus monile
Experimental method: SOLUTION NMR
Deposited: 2023-07-16
Authors: Kancherla, A.K., Sarma, S.P.
PDB entry 8k3o: Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-07-16
Authors: Afsar, M., Shukla, A., Ramachandran, R.
PDB entry 8k3p: S. cerevisiae Chs1 in complex with polyoxin B
Classification: ANTIFUNGAL PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2023-07-16
Authors: Bai, L., Chen, D.D.
PDB entry 8k3q: S. cerevisiae Chs1 in apo state
Classification: ANTIFUNGAL PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-07-16
Authors: Bai, L., Chen, D.
PDB entry 8k3r: S. cerevisiae Chs1 in apo state incubated with GlcNAc
Classification: ANTIFUNGAL PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2023-07-16
Authors: Bai, L., Chen, D.
PDB entry 8k3s: Structure of PKD2-F604P complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-16
Authors: Chen, M.Y., Su, Q., Wang, Z.F., Yu, Y.
PDB entry 8k3t: S. cerevisiae Chs1 in complex with UDP
Classification: ANTIFUNGAL PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2023-07-17
Authors: Bai, L., Chen, D.
PDB entry 8k3u: S. cerevisiae Chs1 in complex with UDP and GlcNAc
Classification: ANTIFUNGAL PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-07-17
Authors: Bai, L., Chen, D.
PDB entry 8k3v: S. cerevisiae Chs1 in complex with UDP-GlcNAc
Classification: ANTIFUNGAL PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-17
Authors: Bai, L., Chen, D.
PDB entry 8k3w: S. cerevisiae Chs1 in complex with UDP-GlcNAc and GlcNAc
Classification: ANTIFUNGAL PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-07-17
Authors: Bai, L., Chen, D.
PDB entry 8k3x: S. cerevisiae Chs1 in complex with Nikkomycin Z
Classification: ANTIFUNGAL PROTEIN/INHIBITOR
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-07-17
Authors: Bai, L., Chen, D.
PDB entry 8k3y: The ""5+1"" heteromeric structure of Lon protease consisting of a spiral pentamer with Y224S mutation and an N-terminal-truncated monomeric E613K mutant
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.42 Å
Deposited: 2023-07-17
Authors: Li, S., Hsieh, K.Y., Kuo, C.I., Zhang, K., Chang, C.I.
PDB entry 8k3z: Cryo-EM structure of CXCR4 in complex with CXCL12
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-07-17
Authors: Liu, Y.Z., Liu, A.J., Liao, Q.W., Ye, R.D.
PDB entry 8k40: mercuric reductase,GbsMerA, - FAD bound
Classification: TRANSFERASE
Source organism: Gelidibacter salicanalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-17
Authors: Do, H.
PDB entry 8k41: mercuric reductase,GbsMerA, - FAD bound
Classification: TRANSFERASE
Source organism: Gelidibacter salicanalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-07-17
Authors: Do, H.
PDB entry 8k42: Structure of full Banna virus
Classification: VIRUS
Source organism: Banna virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-07-17
Authors: Li, Z., Cao, S.
PDB entry 8k43: In situ structure of RNA-dependent RNA polymerase in full BAV particles
Classification: VIRUS
Source organism: Banna virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-07-17
Authors: Li, Z., Cao, S.
PDB entry 8k44: Structure of VP9 in Banna virus
Classification: VIRAL PROTEIN
Source organism: Banna virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-17
Authors: Li, Z., Cao, S.
PDB entry 8k45: A potent and broad-spectrum neutralizing nanobody for SARS-CoV-2 viruses including all major Omicron strains
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2023-07-17
Authors: Lu, Y., Gao, Y., Yao, H., Xu, W., Yang, H.
PDB entry 8k46: A potent and broad-spectrum neutralizing nanobody for SARS-CoV-2 viruses including all major Omicron strains
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-07-17
Authors: Lu, Y., Gao, Y., Yao, H., Xu, W., Yang, H.
PDB entry 8k47: A potent and broad-spectrum neutralizing nanobody for SARS-CoV-2 viruses including all major Omicron strains
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2023-07-17
Authors: Lu, Y., Gao, Y., Yao, H., Xu, W., Yang, H.
PDB entry 8k48: LTD of arabidopsis thaliana
Classification: PHOTOSYNTHESIS
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-17
Authors: Wang, C., Xu, X.M.
PDB entry 8k49: Structure of partial Banna virus
Classification: VIRUS
Source organism: Banna virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-17
Authors: Li, Z., Cao, S.
PDB entry 8k4a: Structure of Banna virus core
Classification: VIRUS
Source organism: Banna virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-07-17
Authors: Li, Z., Cao, S.
PDB entry 8k4b: Cryo-EM structure of nucleotide-bound ComA with ZinC ion
Classification: MEMBRANE PROTEIN
Source organism: Streptococcus pneumoniae D39
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-07-17
Authors: Yu, L., Xin, X., Min, L., Feng, H.
PDB entry 8k4c: Crystal structure of PDE4D complexed with ethaverine hydrochloride
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-17
Authors: Liu, J.Y., Li, M.J., Xu, Y.C.
PDB entry 8k4d: Structure of the SA2/Scc1/CENP_U complex
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2023-07-18
Authors: Liu, M.J., He, X.J.
PDB entry 8k4e: Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-18
Authors: Ramachandran, R., Afsar, M., Shukla, A.
PDB entry 8k4f: DHODH in complex with compound A0
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-07-18
Authors: Jian, L., Sun, Q.
PDB entry 8k4h: Crystal structure of PDE4D complexed with benzbromarone
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-18
Authors: Liu, J.Y., Li, M.J., Xu, Y.C.
PDB entry 8k4i: Crystal structure of YajQ STM0435
Classification: STRUCTURAL GENOMICS
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-07-19
Authors: Dai, Y., Zhang, M., Wang, W., Li, B.
PDB entry 8k4k: Crystal structure of human Biliverdin IX-beta reductase B with Olsalazine carbon derivative
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-19
Authors: Ha, J.H., Jung, H.M., dela Cerna, M.V.C., Burlison, J.A., Lee, D., Ryu, K.S.
PDB entry 8k4l: Crystal structure of NRF1 homodimer in complex with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-19
Authors: Liu, K., Li, W.F., Min, J.R.
PDB entry 8k4m: Anti CRISPR protein, AcrIIA13b
Classification: IMMUNE SYSTEM
Source organism: Staphylococcus haemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-07-19
Authors: Lee, S.Y., Park, H.H.
PDB entry 8k4n: Structure of GPR34-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-07-20
Authors: Wong, T.S., Zeng, Z.C., Xiong, T.T., Gan, S.Y., He, G.D., Du, Y.
PDB entry 8k4o: Cryo-EM structure of Kaposi's Sarcoma-Associated Herpesvirus-G Protein-Coupled Receptor (KSHV-GPCR)in complex with CXC chemokine CXCL1
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human gammaherpesvirus 8
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-07-20
Authors: Liu, Y.Z., Liu, A.J.
PDB entry 8k4p: Cryo-EM structure of an active Kaposi's Sarcoma-Associated Herpesvirus-G Protein-Coupled Receptor (KSHV-GPCR) in complex with Gi protein
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human gammaherpesvirus 8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-07-20
Authors: Liu, Y.Z., Liu, A.J.
PDB entry 8k4q: Crystal structure of nanobody HuNb103 bound to human interleukin-4 receptor subunit alpha
Classification: CYTOKINE
Source organism: Camelus dromedarius; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-07-20
Authors: Ding, Y., Zhong, P.Y.
PDB entry 8k4r: Structure of VinM-VinL complex
Classification: LIGASE
Source organism: Streptomyces halstedii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-20
Authors: Miyanaga, A., Nagata, K., Nakajima, J., Chisuga, T., Kudo, F., Eguchi, T.
PDB entry 8k4s: CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-20
Authors: Yang, J., Fan, J.P., Lei, X.G.
PDB entry 8k4t: Crystal structure of HLA-A*11:01 in complex with KRAS G12C peptide (VVVGACGVGK)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-20
Authors: Xu, Y.
PDB entry 8k4u: Structure of BtKY72 spike receptor-binding domain (RBD) complexed with bat ACE2
Classification: VIRAL PROTEIN
Source organism: Rhinolophus landeri; Severe acute respiratory syndrome-related coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-07-20
Authors: Su, C., Qi, J.X., Gao, G.F.
PDB entry 8k4v: Crystal structure of HLA-A*11:01 in complex with KRAS G12R peptide (VVVGARGVGK)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.095 Å
Deposited: 2023-07-20
Authors: Xu, Y.
PDB entry 8k4w: Structure of a triple-helix region of human collagen type I from Trautec
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-20
Authors: Chu, Y., Zhai, Y., Fan, X., Li, J., Wang, L., Fu, S., Feng, P., Qian, S.
PDB entry 8k4x: Structure of a triple-helix region of human Collagen type XVII from Trautec
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-07-20
Authors: Chu, Y., Zhai, Y., Fan, X., Li, J., Wang, L., Fu, S., Feng, P., Qian, S.
PDB entry 8k4y: Structure of a triple-helix region of human ReCol 3 from Trautec
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-20
Authors: Chu, Y., Zhai, Y., Fan, X., Li, J., Wang, L., Fu, S., Feng, P., Qian, S.
PDB entry 8k4z: Crystal structure of human MMP-7 in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-20
Authors: Kamitani, M., Mima, M., Oka, Y.
PDB entry 8k50: Crystal structure of HLA-A*11:01 in complex with KRAS G12V peptide (VVVGARGVGK)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-07-20
Authors: Xu, K.
PDB entry 8k51: Crystal structure of arylamine N-acyltransferase from Streptomyces aureus
Classification: TRANSFERASE
Source organism: Streptomyces aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-07-20
Authors: Ma, B.D., Yan, X., Qu, X., Kong, X.D.
PDB entry 8k52: Cryo-EM structure of chitin synthase
Classification: TRANSFERASE
Source organism: Phytophthora sojae strain P6497
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-07-20
Authors: Zhang, X., Niu, S., Li, P., Bi, Y.
PDB entry 8k53: Structure of the Dimeric Human CNTN2 Ig 1-6-FNIII 1-2 Domain in an Asymmetric State
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-21
Authors: Zhang, Z.Z.
PDB entry 8k55: Crystal structure of sulfur transferase from Frondihabitans sp. PAMC28461 crystallized in the P1 space group
Classification: TRANSFERASE
Source organism: Frondihabitans sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-21
Authors: Nguyen, D.L., Do, H.
PDB entry 8k56: Crystal structure of arylamine N-acyltransferase from Streptomyces aureus complexed with acyl-SNAC
Classification: TRANSFERASE
Source organism: Streptomyces aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2023-07-21
Authors: Ma, B.D., Yan, X., Qu, X., Kong, X.D.
PDB entry 8k57: Crystal structure of sulfur transferase from Frondihabitans sp. PAMC28461 crystallized in the I21 space group
Classification: TRANSFERASE
Source organism: Frondihabitans sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-07-21
Authors: Nguyen, D.L., Do, H.
PDB entry 8k58: The cryo-EM map of close TIEA-TEC complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli (strain K12); Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-07-21
Authors: Zhang, K.N., Liu, Y., Chen, M., Wang, Y., Lin, W., Li, M., Zhang, X., Gao, Y., Gong, Q., Chen, H., Steve, M., Li, S., Zhang, K., Liu, B.
PDB entry 8k59: The cryo-EM map of TIC-TIEA complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli K-12; Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-21
Authors: Zhang, K.N., Liu, Y., Chen, M., Wang, Y., Lin, W., Li, M., Zhang, X., Gao, Y., Gong, Q., Chen, H., Steve, M., Li, S., Zhang, K., Liu, B.
PDB entry 8k5a: The cryo-EM map of open TIEA-TEC complex
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli K-12; Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-07-21
Authors: Zhang, K.N., Liu, Y., Chen, M., Wang, Y., Lin, W., Li, M., Zhang, X., Gao, Y., Gong, Q., Chen, H., Steve, M., Li, S., Zhang, K., Liu, B.
PDB entry 8k5b: Cryo-EM structure of niacin bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-07-21
Authors: Park, J.H., Ishimoto, N., Park, S.Y.
PDB entry 8k5c: Cryo-EM structure of Acipimox bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-07-21
Authors: Park, J.H., Ishimoto, N., Park, S.Y.
PDB entry 8k5d: Cryo-EM structure of GSK256073 bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2023-07-21
Authors: Park, J.H., Ishimoto, N., Park, S.Y.
PDB entry 8k5g: Structure of the SARS-CoV-2 BA.1 RBD with UT28-RD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-07-21
Authors: Chen, L., Kita, S., Anraku, Y., Maenaka, K.
PDB entry 8k5h: Structure of the SARS-CoV-2 BA.1 spike with UT28-RD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-07-21
Authors: Chen, L., Kita, S., Anraku, Y., Maenaka, K.
PDB entry 8k5i: The structure of SenA in complex with N,N,N-trimethyl-histidine and thioglucose
Classification: METAL BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-07-21
Authors: Liu, M., Yang, Y., Huang, J.-W., Chen, C.-C., Guo, R.-T.
PDB entry 8k5j: The structure of SenA in complex with N,N,N-trimethyl-histidine
Classification: METAL BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-07-21
Authors: Liu, M., Yang, Y., Huang, J.-W., Chen, C.-C., Guo, R.-T.
PDB entry 8k5k: The structure of SenA
Classification: METAL BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-07-21
Authors: Liu, M., Yang, Y., Huang, J.-W., Chen, C.-C., Guo, R.-T.
PDB entry 8k5l: Structure of tRNA (cmo5U34)-methyltransferase from Fusobacterium nucleatum
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2023-07-22
Authors: He, S.R., Bai, X.
PDB entry 8k5n: Discovery of Novel PD-L1 Inhibitors That Induce Dimerization and Degradation of PD-L1 Based on Fragment Coupling Strategy
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-22
Authors: Cheng, Y., Xiao, Y.B.
PDB entry 8k5o: Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris
Classification: PHOTOSYNTHESIS
Source organism: Halorhodospira halochloris
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2023-07-22
Authors: Wang, G.-L., Qi, C.-H., Yu, L.-J.
PDB entry 8k5p: Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 2 (Pol II Rat1-PTTC2)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-07-23
Authors: Zeng, Y., Zhang, Y.
PDB entry 8k5q: Crystal structure of YajQ STM0435 with c-di-GMP
Classification: STRUCTURAL GENOMICS
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2023-07-23
Authors: Dai, Y., Zhang, M., Wang, W., Li, B.
PDB entry 8k5r: CDK9/cyclin T1 in complex with KB-0742
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.751 Å
Deposited: 2023-07-24
Authors: Zhou, M., Li, H., Gao, H., Trotter, B.W., Freeman, D.
PDB entry 8k5s: The structure of EntE with 3-(prop-2-yn-1-yloxy)benzoic acid sulfamoyl adenosine
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-07-24
Authors: Miyanaga, A., Ishikawa, F.
PDB entry 8k5t: The structure of EntE with2-methyl-3-chloro-benzoic acid sulfamoyl adenosine
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-07-24
Authors: Miyanaga, A., Ishikawa, F.
PDB entry 8k5u: Se-glycosyltransferase RsSenB
Classification: TRANSFERASE
Source organism: Ramlibacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-07-24
Authors: Huang, W., Long, F.
PDB entry 8k5v: Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-24
Authors: Kamitani, M., Mima, M., Nishikawa-Shimono, R.
PDB entry 8k5w: Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-24
Authors: Kamitani, M., Mima, M., Nishikawa-Shimono, R.
PDB entry 8k5x: Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-24
Authors: Kamitani, M., Mima, M., Nishikawa-Shimono, R.