LiteFold/PDB huggingface dataset:
PDB entry 5d4e: Crystal structure of Thermus thermophilus product complex for transcription initiation with 3'-dephosphate-CoA and CTP
Classification: transcription/dna
Source organism: Thermus thermophilus; Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039); Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2015-08-07
Authors: Zhang, Y., Ebright, R.H.
PDB entry 5d4f: Crystal structure of C-As lyase with Fe(III)
Classification: LYASE
Source organism: Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2015-08-07
Authors: Venkadesh, S., Yoshinaga, M., Sankaran, B., Kandavelu, P., Rosen, B.P.
PDB entry 5d4g: 2009 H1N1 PA endonuclease mutant F105S in complex with rUMP
Classification: HYDROLASE
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2015-08-07
Authors: Kumar, G., White, S.W.
PDB entry 5d4h: High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
Classification: OXIDOREDUCTASE
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2015-08-07
Authors: Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
PDB entry 5d4i: Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography
Classification: OXIDOREDUCTASE
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-07
Authors: Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
PDB entry 5d4j: Chloride-bound form of a copper nitrite reductase from Alcaligenes faecals
Classification: OXIDOREDUCTASE
Source organism: Alcaligenes faecalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-07
Authors: Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
PDB entry 5d4k: Crystal structure of the human polymeric Ig receptor (pIgR) ectodomain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.599 Å
Deposited: 2015-08-07
Authors: Stadtmueller, B.M., Bjorkman, P.J.
PDB entry 5d4l: Structure of the apo form of CPII from Thiomonas intermedia K12, a nitrogen regulatory PII-like protein
Classification: SIGNALING PROTEIN
Source organism: Thiomonas intermedia (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-08-08
Authors: Wheatley, N.M., Ngo, J., Cascio, D., Sawaya, M.R., Yeates, T.O.
PDB entry 5d4n: Structure of CPII bound to ADP, AMP and acetate, from Thiomonas intermedia K12
Classification: SIGNALING PROTEIN
Source organism: Thiomonas intermedia (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-08
Authors: Wheatley, N.M., Ngo, J., Cascio, D., Sawaya, M.R., Yeates, T.O.
PDB entry 5d4o: Structure of CPII, a nitrogen regulatory PII-like protein from Thiomonas intermedia K12, bound to ADP, AMP and bicarbonate.
Classification: SIGNALING PROTEIN
Source organism: Thiomonas intermedia (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-08
Authors: Wheatley, N.M., Ngo, J., Cascio, D., Sawaya, M.R., Yeates, T.O.
PDB entry 5d4p: Structure of CPII bound to ADP and bicarbonate, from Thiomonas intermedia K12
Classification: SIGNALING PROTEIN
Source organism: Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-08-08
Authors: Wheatley, N.M., Ngo, J., Cascio, D., Sawaya, M.R., Yeates, T.O.
PDB entry 5d4q: Crystal structure of GASDALIE IgG1 Fc
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2015-08-08
Authors: Ahmed, A.A., Bjorkman, P.J.
PDB entry 5d4r: Crystal Structure of AraR(DBD) in complex with operator ORE1
Classification: TRANSCRIPTION/DNA
Source organism: Bacillus subtilis (strain 168); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2015-08-08
Authors: Jain, D., Narayanan, N., Nair, D.T.
PDB entry 5d4s: Crystal Structure of AraR(DBD) in complex with operator ORX1
Classification: TRANSCRIPTION/DNA
Source organism: Bacillus subtilis (strain 168); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.972 Å
Deposited: 2015-08-08
Authors: Jain, D., Narayanan, N., Nair, D.T.
PDB entry 5d4t: SeMet-labelled HcgC from Methanocaldococcus jannaschii in space group P212121
Classification: UNKNOWN FUNCTION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-08-09
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 5d4u: SAM-bound HcgC from Methanocaldococcus jannaschii
Classification: UNKNOWN FUNCTION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-09
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 5d4v: HcgC with SAH and a guanylylpyridinol (GP) derivative
Classification: UNKNOWN FUNCTION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-09
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 5d4w: Crystal structure of Hsp104
Classification: CHAPERONE
Source organism: Chaetomium thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2015-08-09
Authors: Heuck, A., Schitter-Sollner, S., Clausen, T.
PDB entry 5d4y: A psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase
Classification: HYDROLASE
Source organism: environmental samples
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-08-10
Authors: Zheng, Y., Guo, R.T.
PDB entry 5d4z: Crystal structure of Repressor from Salmonella-temperate phage
Classification: DNA BINDING PROTEIN
Source organism: Salmonella phage SPC32H
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2015-08-10
Authors: Kim, H.J., Yoon, H.J., Ryu, S., Lee, H.H.
PDB entry 5d50: Crystal structure of Rep-Ant complex from Salmonella-temperate phage
Classification: DNA BINDING PROTEIN
Source organism: Salmonella phage SPC32H
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2015-08-10
Authors: Son, S.H., Yoon, H.J., Ryu, S., Lee, H.H.
PDB entry 5d51: Krypton derivatization of an O2-tolerant membrane-bound [NiFe] hydrogenase reveals a hydrophobic gas tunnel network
Classification: OXIDOREDUCTASE
Source organism: Cupriavidus necator
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2015-08-10
Authors: Kalms, J., Schmidt, A., Frielingsdorf, S., van der Linden, P., von Stetten, D., Lenz, O., Carpentier, P., Scheerer, P.
PDB entry 5d52: In meso in situ serial X-ray crystallography structure of insulin at room temperature
Classification: HORMONE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Warshamanage, R., Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d53: In meso in situ serial X-ray crystallography structure of insulin at 100 K
Classification: HORMONE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d54: In meso X-ray crystallography structure of insulin at 100 K
Classification: HORMONE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Wang, M., Caffrey, M.
PDB entry 5d55: Crystal structure of the E. coli Hda pilus minor tip subunit, HdaB
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-10
Authors: Lee, W.-C., Garnett, J.A., Matthews, S.J.
PDB entry 5d56: In meso in situ serial X-ray crystallography structure of diacylglycerol kinase, DgkA, at 100 K
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Howe, N., Olieric, V., Warshamanage, R., Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d57: In meso X-ray crystallography structure of diacylglycerol kinase, DgkA, at 100 K
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Howe, N., Olieric, V., Wang, M., Caffrey, M.
PDB entry 5d58: In meso in situ serial X-ray crystallography structure of the PepTSt-Ala-Phe complex at 100 K
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d59: In meso X-ray crystallography structure of the PepTSt-Ala-Phe complex at 100 K
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Wang, M., Caffrey, M.
PDB entry 5d5a: In meso in situ serial X-ray crystallography structure of the Beta2-adrenergic receptor at 100 K
Classification: Membrane Protein/Hydrolase
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4826 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Warshamanage, R., Liu, X., Kobilka, B., Kay Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d5b: In meso X-ray crystallography structure of the Beta2-adrenergic receptor at 100 K
Classification: Membrane Protein/Hydrolase
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Liu, X., Kobilka, B., Wang, M., Caffrey, M.
PDB entry 5d5c: In meso in situ serial X-ray crystallography structure of lysozyme at 100 K
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d5d: In meso in situ serial X-ray crystallography structure of AlgE at 100 K
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-10
Authors: Ma, P., Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d5e: In meso in situ serial X-ray crystallography structure of insulin by sulfur-SAD at 100 K
Classification: HORMONE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.407 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Warshamanage, R., Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d5f: In meso in situ serial X-ray crystallography structure of lysozyme by bromine-SAD at 100 K
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-10
Authors: Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.
PDB entry 5d5g: Structure of colocasia esculenta agglutinin
Classification: SUGAR BINDING PROTEIN
Source organism: Colocasia esculenta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2015-08-10
Authors: Biswas, H., Chattopadhyaya, R.
PDB entry 5d5h: Crystal structure of Mycobacterium tuberculosis Topoisomerase I
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2015-08-10
Authors: Tan, K., Cheng, B., Tse-Dinh, Y.C.
PDB entry 5d5k: Crystal Structure NLS from human PARP-2 complexed with Importin alpha delta IBB
Classification: PROTON TRANSPORT
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-10
Authors: Riccio, A.A., Cingolani, G., Pascal, J.M.
PDB entry 5d5l: PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-08-10
Authors: Wedekind, J.E., Liberman, J.A., Salim, M.
PDB entry 5d5m: Structure of human MR1-5-OP-RU in complex with human MAIT M33.64 TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-08-11
Authors: Keller, A.N., Birkinshaw, R.W., Rossjohn, J.
PDB entry 5d5n: Crystal Structure of the Human Cytomegalovirus pUL50-pUL53 Complex
Classification: VIRAL PROTEIN
Source organism: Human cytomegalovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2015-08-11
Authors: Walzer, S.A., Egerer-Sieber, C., Hohl, K., Sevvana, M., Muller, Y.A.
PDB entry 5d5o: HcgC from Methanocaldococcus jannaschii
Classification: UNKNOWN FUNCTION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-08-11
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 5d5p: HcgB from Methanococcus maripaludis
Classification: TRANSFERASE
Source organism: Methanococcus maripaludis (strain S2 / LL)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-11
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 5d5q: HcgB from Methanocaldococcus jannaschii with the pyridinol derived from FeGP cofactor of [Fe]-hydrogenase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-08-11
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 5d5r: Horse-heart myoglobin - deoxy state
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-11
Authors: Barends, T., Schlichting, I.
PDB entry 5d5s: Crystal structure of methionine gamma-lyase from Citrobacter freundii, S339A mutant
Classification: LYASE
Source organism: Citrobacter freundii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-11
Authors: Revtovich, S.V., Nikulin, A.D., Anufrieva, N.V., Morozova, E.A., Demidkina, T.V.
PDB entry 5d5t: SeMet-labelled HcgC from Methanocaldococcus jannaschii in P1 space group
Classification: UNKNOWN FUNCTION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-11
Authors: Fujishiro, T., Ermler, U., Shima, S.
PDB entry 5d5u: Crystal structure of human Hsf1 with HSE DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2015-08-11
Authors: Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.
PDB entry 5d5v: Crystal structure of human Hsf1 with Satellite III repeat DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2015-08-11
Authors: Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.
PDB entry 5d5w: Crystal structure of Chaetomium thermophilum Skn7 with HSE DNA
Classification: TRANSCRIPTION
Source organism: Chaetomium thermophilum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2015-08-11
Authors: Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.
PDB entry 5d5x: Crystal structure of Chaetomium thermophilum Skn7 with SSRE DNA
Classification: TRANSCRIPTION
Source organism: Chaetomium thermophilum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-11
Authors: Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.
PDB entry 5d5y: Structure of Chaetomium thermophilum Skn7 coiled-coil domain, crystal form I
Classification: TRANSCRIPTION
Source organism: Chaetomium thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2015-08-11
Authors: Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.
PDB entry 5d5z: Structure of Chaetomium thermophilum Skn7 coiled-coil domain, crystal form II
Classification: TRANSCRIPTION
Source organism: Chaetomium thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-11
Authors: Neudegger, T., Verghese, J., Hayer-Hartl, M., Bracher, A., Hartl, F.U.
PDB entry 5d60: Structure of Chaetomium thermophilum Skn7 coiled-coil domain, crystal form III
Classification: TRANSCRIPTION
Source organism: Chaetomium thermophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-11
Authors: Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.
PDB entry 5d61: MOA-Z-VAD-fmk complex, direct orientation
Classification: HYDROLASE
Source organism: Marasmius oreades; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-11
Authors: Cordara, G., van Eerde, A., Grahn, E.M., Goldstein, I.J., Krengel, U.
PDB entry 5d62: MOA-Z-VAD-fmk complex, inverted orientation
Classification: HYDROLASE
Source organism: Marasmius oreades; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-11
Authors: Cordara, G., Krengel, U.
PDB entry 5d63: MOA-Z-VAD-fmk inhibitor complex, direct/inverted dual orientation
Classification: HYDROLASE
Source organism: Marasmius oreades; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2015-08-11
Authors: Cordara, G., Krengel, U.
PDB entry 5d65: X-RAY STRUCTURE OF MACROPHAGE INFLAMMATORY PROTEIN-1 ALPHA (CCL3) WITH HEPARIN COMPLEX
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2015-08-11
Authors: Liang, W.G., Hwang, D.Y., Zulueta, M.M., Hung, S.C., Tang, W.
PDB entry 5d66: Crystal structure of an ankyrin repeat domain (ABAYE2397) from Acinetobacter baumannii AYE at 1.00 A resolution
Classification: Structural Genomics, Unknown Function
Source organism: Acinetobacter baumannii (strain AYE)
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2015-08-11
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 5d67: Crystal structure of an EF-Hand calcium binding domain of CAP-Binding Protein Complex-Interacting Protein 1 (EFCAB6) from Homo sapiens at 2.00 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-11
Authors: Joint Center for Structural Genomics (JCSG), Partnership for Nuclear Receptor Signaling Code Biology, Partnership for Nuclear Receptor Signaling Code Biology (NHRS)
PDB entry 5d68: Crystal structure of KRIT1 ARD-FERM
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.908 Å
Deposited: 2015-08-11
Authors: Zhang, R., Li, X., Boggon, T.J.
PDB entry 5d69: Human calpain PEF(S) with (2Z,2Z')-2,2'-disulfanediylbis(3-(6-iodoindol-3-yl)acrylic acid) bound
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2015-08-11
Authors: Adams, S.E., Robinson, E.J., Rizkallah, P.J., Miller, D.J., Hallett, M.B., Allemann, R.K.
PDB entry 5d6a: 2.7 Angstrom Crystal Structure of ABC transporter ATPase from Vibrio vulnificus in Complex with Adenylyl-imidodiphosphate (AMP-PNP)
Classification: HYDROLASE
Source organism: Vibrio vulnificus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-08-11
Authors: Minasov, G., Wawrzak, Z., Shuvalova, L., Dubrovska, I., Flores, K., Grimshaw, S., Kwon, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 5d6b: Human fumarase (wild type)
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-08-11
Authors: Pereira de Padua, R.A., Nonato, M.C.
PDB entry 5d6c: Structure of 4497 Fab bound to synthetic wall teichoic acid fragment
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2015-08-12
Authors: Lupardus, P.J., Fong, R.
PDB entry 5d6d: Crystal structure of GASDALIE IgG1 Fc in complex with FcgRIIIa
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2015-08-12
Authors: Ahmed, A.A., Bjorkman, P.J.
PDB entry 5d6e: Structure of human methionine aminopeptidase 2 with covalent spiroepoxytriazole inhibitor (-)-31b
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2015-08-12
Authors: Janowski, R., Miller, A.K., Niessing, D.
PDB entry 5d6f: Structure of human methionine aminopeptidase-2 complexed with spiroepoxytriazole inhibitor (+)-31b
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2015-08-12
Authors: Janowski, R., Miller, A.K., Niessing, D.
PDB entry 5d6g: CRYSTAL STRUCTURE OF FRAGMENT OF RIBOSOMAL PROTEIN P0 IN COMPLEX WITH 74NT 23S RNA FROM METHANOCOCCUS JANNASCHII
Classification: TRANSLATION
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2015-08-12
Authors: Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.
PDB entry 5d6h: Crystal structure of CsuC-CsuA/B chaperone-major subunit pre-assembly complex from Csu biofilm-mediating pili of Acinetobacter baumannii
Classification: CHAPERONE/PROTEIN TRANSPORT
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-12
Authors: Pakharukova, N.A., Tuitilla, M., Paavilainen, S., Zavialov, A.
PDB entry 5d6i: DgkA - CIM
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.091 Å
Deposited: 2015-08-12
Authors: Ma, P., Caffrey, M.
PDB entry 5d6j: Crystal structure of a mycobacterial protein
Classification: LIGASE/PROTEIN BINDING
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155); Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-08-12
Authors: Li, W.J., Bi, L.J.
PDB entry 5d6k: PepT - CIM
Classification: TRANSPORT PROTEIN
Source organism: Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-12
Authors: Ma, P., Caffrey, M.
PDB entry 5d6l: beta2AR-T4L - CIM
Classification: MEMBRANE PROTEIN/HYDROLASE
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-08-12
Authors: Ma, P., Caffrey, M.
PDB entry 5d6m: Mn(II)-loaded MnCcP.1
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.653 Å
Deposited: 2015-08-12
Authors: Robinson, H., Gao, Y.-G., Hosseinzadeh, P., Lu, Y.
PDB entry 5d6n: Crystal structure of a mycobacterial protein
Classification: LIGASE
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2015-08-12
Authors: Li, W.J., Bi, L.J.
PDB entry 5d6o: Orthorhombic Crystal Structure of an acetylester hydrolase from Corynebacterium glutamicum
Classification: TRANSFERASE
Source organism: Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-12
Authors: Niefind, K., Toelzer, C., Altenbuchner, J., Watzlawick, H.
PDB entry 5d6p: Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-08-12
Authors: Zhang, J., Yang, Q., Cross, J.B., Romero, J.A.C., Ryan, M.D., Lippa, B., Dolle, R.E., Andersen, O.A., Barker, J., Cheng, R.K., Kahmann, J., Felicetti, B., Wood, M., Scheich, C.
PDB entry 5d6q: Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-12
Authors: Zhang, J., Yang, Q., Cross, J.B., Romero, J.A.C., Ryan, M.D., Lippa, B., Dolle, R.E., Andersen, O.A., Barker, J., Cheng, R.K., Kahmann, J., Felicetti, B., Wood, M., Scheich, C.
PDB entry 5d6r: Acetolactate Synthase from Klebsiella pneumoniae in Complex with Mechanism-Based Inhibitor
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.276 Å
Deposited: 2015-08-12
Authors: Latta, A.J., Andrews, F.H., McLeish, M.J.
PDB entry 5d6s: Structure of epoxyqueuosine reductase from Streptococcus thermophilus.
Classification: OXIDOREDUCTASE
Source organism: Streptococcus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2015-08-12
Authors: Payne, K.A.P., Fisher, K., Dunstan, M.S., Sjuts, H., Leys, D.
PDB entry 5d6t: Crystal Structure of Aspergillus clavatus Sph3 in complex with GalNAc
Classification: HYDROLASE
Source organism: Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2015-08-12
Authors: Bamford, N.C., Little, D.J., Howell, P.L.
PDB entry 5d6u: X-ray crystal structure of ribonuclease A determined for the real space D/H contrast method
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2015-08-13
Authors: Chatake, T., Fujiwara, S.
PDB entry 5d6v: PduJ K25A mutant, from Salmonella enterica serovar Typhimurium LT2, PduJ mutant
Classification: STRUCTURAL PROTEIN
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-13
Authors: Chun, S., Sawaya, M.R., Yeates, T.O.
PDB entry 5d6w: Crystal structure of double tudor domain of human lysine demethylase KDM4A
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.992 Å
Deposited: 2015-08-13
Authors: Wang, F., Su, Z., Denu, J.M., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)
PDB entry 5d6x: Crystal structure of double tudor domain of human lysine demethylase KDM4A
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.153 Å
Deposited: 2015-08-13
Authors: Wang, F., Su, Z., Denu, J.M., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)
PDB entry 5d6y: Crystal structure of double tudor domain of human lysine demethylase KDM4A complexed with histone H3K23me3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.287 Å
Deposited: 2015-08-13
Authors: Wang, F., Su, Z., Miller, M.D., Denu, J.M., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)
PDB entry 5d70: Crystal structure of MOR03929, a neutralizing anti-human GM-CSF antibody Fab fragment in complex with human GM-CSF
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2015-08-13
Authors: Eylenstein, R., Weinfurtner, D., Steidl, S., Boettcher, J., Augustin, M.
PDB entry 5d71: Crystal structure of MOR04302, a neutralizing anti-human GM-CSF antibody Fab fragment in complex with human GM-CSF
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-08-13
Authors: Eylenstein, R., Weinfurtner, D., Steidl, S., Boettcher, J., Augustin, M.
PDB entry 5d72: Crystal structure of MOR04252, a neutralizing anti-human GM-CSF antibody Fab fragment in complex with human GM-CSF
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-08-13
Authors: Eylenstein, R., Weinfurtner, D., Steidl, S., Boettcher, J., Augustin, M.
PDB entry 5d73: Structure of Wuchereria bancrofti pi-class glutathione S-transferase
Classification: TRANSFERASE
Source organism: Wuchereria bancrofti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2015-08-13
Authors: Prince, P.R., Sakthidevi, M., Madhumathi, J., Perbandt, M., Betzel, C., Kaliraj, P.
PDB entry 5d74: The crystal structure of Ly7917
Classification: HYDROLASE
Source organism: Streptococcus phage phi7917
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-13
Authors: Wu, L., Ji, W.H., Sun, J.H., Zhou, J.H.
PDB entry 5d75: Crystal structure of Human FKBD25 in complex with FK506
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2015-08-13
Authors: Rajan, S., Prakash, A., Yoon, H.S.
PDB entry 5d76: The crystal structure of Ly7917 with the hydrolyzing product of MDP
Classification: HYDROLASE
Source organism: Streptococcus phage phi7917
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2015-08-13
Authors: Wu, L., Ji, W.H., Sun, J.H., Zhou, J.H.
PDB entry 5d77: Structure of Mip6 RRM3 Domain
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2015-08-13
Authors: Mohamad, N., Bravo, J.
PDB entry 5d78: Structure of RRM3 Domain of Mip6 at 1.25 A Resolution
Classification: RNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.251 Å
Deposited: 2015-08-13
Authors: Mohamad, N., Bravo, J.
PDB entry 5d79: Structure of BBE-like #28 from Arabidopsis thaliana
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.849 Å
Deposited: 2015-08-13
Authors: Daniel, B., Kumar, P., Gruber, K.
PDB entry 5d7a: Crystal structure of the kinase domain of TRAF2 and NCK-interacting protein kinase with NCB-0846
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-08-13
Authors: Ohbayashi, N., Kukimoto-Niino, M., Yamada, T., Shirouzu, M.
PDB entry 5d7b: Trigonal Crystal Structure of an acetylester hydrolase from Corynebacterium glutamicum
Classification: HYDROLASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-08-13
Authors: Niefind, K., Toelzer, C., Pal, S., Altenbuchner, J., Watzlawick, H.
PDB entry 5d7c: Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2015-08-13
Authors: Zhang, J., Yang, Q., Cross, J.B., Romero, J.A.C., Ryan, M.D., Lippa, B., Dolle, R.E., Andersen, O.A., Barker, J., Cheng, R.K., Kahmann, J., Felicetti, B., Wood, M., Scheich, C.
PDB entry 5d7d: Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-13
Authors: Zhang, J., Yang, Q., Cross, J.B., Romero, J.A.C., Ryan, M.D., Lippa, B., Dolle, R.E., Andersen, O.A., Barker, J., Cheng, R.K., Kahmann, J., Felicetti, B., Wood, M., Scheich, C.
PDB entry 5d7e: Crystal structure of Taf14 YEATS domain in complex with H3K9ac
Classification: NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-13
Authors: Andrews, F.H., Shanle, E.K., Strahl, B.D., Kutateladze, T.G.
PDB entry 5d7f: X-ray structure of Ca(2+)-S100B with human RAGE-derived W72 peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2015-08-13
Authors: Jensen, J.L., Colbert, C.L.
PDB entry 5d7g: Structure of human ATG5 E122D-ATG16L1 complex at 3.0 Angstroms
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-08-13
Authors: Qiu, Y., Schulman, B.A.
PDB entry 5d7h: X-RAY CRYSTAL STRUCTURE OF L,D TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2015-08-13
Authors: Saavedra, H., Basta, L.A., Lamichhane, G., Bianchet, M.A.
PDB entry 5d7i: Structure of human MR1-Ac-6-FP in complex with human MAIT M33.64 TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-08-14
Authors: Keller, A.N., Woolley, R.E., Rossjohn, J.
PDB entry 5d7j: Structure of human MR1-5-OP-RU in complex with human MAIT M33.64(Y95alphaF) TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2015-08-14
Authors: Keller, A.N., Woolley, R.E., Rossjohn, J.
PDB entry 5d7k: Structure of MR1-reactive MAV36 TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-14
Authors: Keller, A.N., Rossjohn, J.
PDB entry 5d7l: Structure of human MR1-5-OP-RU in complex with human MAV36 TCR
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2015-08-14
Authors: Keller, A.N., Rossjohn, J.
PDB entry 5d7n: Crystal structure of human Sirt3 at an improved resolution
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2015-08-14
Authors: Rumpf, T., Gerhardt, S., Einsle, O., Jung, M.
PDB entry 5d7o: Crystal structure of Sirt2-ADPR at an improved resolution
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2015-08-14
Authors: Rumpf, T., Gerhardt, S., Einsle, O., Jung, M.
PDB entry 5d7p: Crystal structure of human Sirt2 in complex with ADPR and EX-243
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2015-08-14
Authors: Rumpf, T., Gerhardt, S., Einsle, O., Jung, M.
PDB entry 5d7q: Crystal structure of human Sirt2 in complex with ADPR and CHIC35
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2015-08-14
Authors: Rumpf, T., Gerhardt, S., Einsle, O., Jung, M.
PDB entry 5d7r: Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Classification: ISOMERASE/ISOMERASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2015-08-14
Authors: Zhang, J., Yang, Q., Cross, J.B., Romero, J.A.C., Ryan, M.D., Lippa, B., Dolle, R.E., Andersen, O.A., Barker, J., Cheng, R.K., Kahmann, J., Felicetti, B., Wood, M., Scheich, C.
PDB entry 5d7s: Crystal structure of MOR04357, a neutralizing anti-human GM-CSF antibody Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2015-08-14
Authors: Eylenstein, R., Weinfurtner, D., Steidl, S., Boettcher, J., Augustin, M.
PDB entry 5d7u: Crystal structure of the C-terminal domain of MMTV integrase
Classification: HYDROLASE
Source organism: Mouse mammary tumor virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-14
Authors: Cook, N.J., Pye, V.E., Ballandras-Colas, A., Engelman, A., Cherepanov, P.
PDB entry 5d7v: Crystal structure of PTK6 kinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2015-08-14
Authors: Thakur, M.K., Birudukota, S., Swaminathan, S., Tyagi, R., Gosu, R.
PDB entry 5d7w: Crystal structure of serralysin
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2015-08-14
Authors: Wu, D., Ran, T., Xu, D.Q., Wang, W.
PDB entry 5d7x: Crystal structure of the human BRPF1 bromodomain in complex with XZ08
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2015-08-14
Authors: Zhu, J., Caflisch, A.
PDB entry 5d7y: Crystal structure of Hepatitis B virus T=4 capsid in complex with the allosteric modulator HAP18
Classification: VIRUS/INHIBITOR
Source organism: Hepatitis B virus genotype D subtype adw (isolate United Kingdom/adyw/1979)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.894 Å
Deposited: 2015-08-14
Authors: Venkatakrishnan, B., Katen, S.P., Zlotnick, A.
PDB entry 5d7z: Crystal structure of glyoxalase I from Zea mays
Classification: LYASE
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2015-08-14
Authors: Gonzalez, J.M.
PDB entry 5d80: Crystal Structure of Yeast V1-ATPase in the Autoinhibited Form
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 6.202 Å
Deposited: 2015-08-14
Authors: Oot, R.A., Kane, P.M., Berry, E.A., Wilkens, S.
PDB entry 5d81: Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y57(Cl-Y)
Classification: ISOMERASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2015-08-15
Authors: Wu, Y., Fried, S.D., Boxer, S.G.
PDB entry 5d82: Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y16(Cl-Y)
Classification: ISOMERASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2015-08-15
Authors: Wu, Y., Fried, S.D., Boxer, S.G.
PDB entry 5d83: Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y32(Cl-Y)
Classification: ISOMERASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-15
Authors: Wu, Y., Fried, S.D., Boxer, S.G.
PDB entry 5d84: Staphyloferrin B precursor biosynthetic enzyme SbnA bound to PLP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2015-08-15
Authors: Grigg, J.C., Kobylarz, M.J., Liu, Y., Lee, M.S.F., Heinrichs, D.E., Murphy, M.E.P.
PDB entry 5d85: Staphyloferrin B precursor biosynthetic enzyme SbnA bound to aminoacrylate intermediate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2015-08-15
Authors: Kobylarz, M.J., Grigg, J.C., Liu, Y., Lee, M.S.F., Heinrichs, D.E., Murphy, M.E.P.
PDB entry 5d86: Staphyloferrin B precursor biosynthetic enzyme SbnA Y152F variant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-15
Authors: Kobylarz, M.J., Grigg, J.C., Liu, Y., Lee, M.S.F., Heinrichs, D.E., Murphy, M.E.P.
PDB entry 5d87: Staphyloferrin B precursor biosynthetic enzyme SbnA Y152F/S185G variant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-08-15
Authors: Kobylarz, M.J., Grigg, J.C., Liu, Y., Lee, M.S.F., Heinrichs, D.E., Murphy, M.E.P.
PDB entry 5d88: The Structure of the U32 Peptidase Mk0906
Classification: HYDROLASE
Source organism: Methanopyrus kandleri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2015-08-15
Authors: Baumann, U., Schacherl, M., Monatda, A.A.M.
PDB entry 5d8a: Crystal structure of recombinant foot-and-mouth-disease virus A22-H2093F empty capsid
Classification: VIRUS
Source organism: Foot-and-mouth disease virus - type A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-16
Authors: Kotecha, A., Seago, J., Scott, K., Burman, A., Loureiro, S., Ren, J., Porta, C., Ginn, H.M., Jackson, T., Perez-Martin, E., Siebert, C.A., Paul, G., Huiskonen, J.T., Jones, I.M., Esnouf, R.M., Fry, E.E., Maree, F.F., Charleston, B., Stuart, D.I.
PDB entry 5d8b: Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
Classification: TRANSLATION
Source organism: Escherichia coli; Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039); Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); Thermus thermophilus HB27; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.63 Å
Deposited: 2015-08-17
Authors: Svidritskiy, E., Korostelev, A.A.
PDB entry 5d8c: Crystal structure of HiNmlR, a MerR family regulator lacking the sensor domain, bound to promoter DNA
Classification: transcription/dna
Source organism: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-08-17
Authors: Counago, R.M., Chang, C.W., Chen, N.H., Djoko, K.Y., McEwan, A.G., Kobe, B.
PDB entry 5d8d: Crystal structure of D-alanine-D-alanine ligase from Acinetobacter baumannii
Classification: LIGASE
Source organism: Acinetobacter baumannii ACICU
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2015-08-17
Authors: Huynh, K.H., Hong, M.K., Kang, L.W.
PDB entry 5d8e: crystal structure of SSB from homo sapiens
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-08-17
Authors: Li, Y.H., Gao, Z.Q., Dong, Y.H.
PDB entry 5d8f: crystal structure of SSB and ssDNA complex from homo sapiens
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2015-08-17
Authors: Li, Y.H., Gao, Z.Q., Dong, Y.H.
PDB entry 5d8g: A structural view on the dissociation of E. coli Tryptophanase
Classification: LYASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2015-08-17
Authors: Almog, O.
PDB entry 5d8h: CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON
Classification: RIBOSOMAL PROTEIN
Source organism: Methanocaldococcus jannaschii; Streptomyces azureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-08-17
Authors: Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.
PDB entry 5d8i: Engineering the Species-Specificity of an Inhibitory Antibody Targeting a Modulator of Tumor Stroma
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-08-17
Authors: Grossman, I., Fass, D.
PDB entry 5d8j: Development of a therapeutic monoclonal antibody targeting secreted aP2 to treat type 2 diabetes.
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-08-17
Authors: Doyle, C., Birrane, G.
PDB entry 5d8k: Human HSF2 DNA-Binding Domain bound to 2-site HSE DNA at 1.73 Angstroms Resolution
Classification: transcription/dna
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.728 Å
Deposited: 2015-08-17
Authors: Jaeger, A.M., Pemble, C.W., Thiele, D.J.
PDB entry 5d8l: Human HSF2 DNA Binding Domain in complex with 3-site HSE DNA at 2.1 Angstroms Resolution
Classification: transcription/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.069 Å
Deposited: 2015-08-17
Authors: Jaeger, A.M., Pemble, C.W., Thiele, D.J.
PDB entry 5d8m: Crystal structure of the metagenomic carboxyl esterase MGS0156
Classification: HYDROLASE
Source organism: uncultured organism
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2015-08-17
Authors: Cui, H., Nocek, B., Tchigvintsev, A., Popovic, A., Savchenko, A., Joachimiak, A., Yakunin, A.
PDB entry 5d8n: Tomato leucine aminopeptidase mutant - K354E
Classification: HYDROLASE
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2015-08-17
Authors: DuPrez, K.T., Scranton, M.A., Walling, L.L., Fan, L.
PDB entry 5d8o: 1.90A resolution structure of BfrB (wild-type, C2221 form) from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-17
Authors: Lovell, S., Battaile, K.P., Wang, Y., Yao, H., Rivera, M.
PDB entry 5d8p: 2.35A resolution structure of iron bound BfrB (wild-type, C2221 form) from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2015-08-17
Authors: Lovell, S., Battaile, K.P., Wang, Y., Yao, H., Rivera, M.
PDB entry 5d8q: 2.20A resolution structure of BfrB (L68A) from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-08-17
Authors: Lovell, S., Battaile, K.P., Wang, Y., Yao, H., Rivera, M.
PDB entry 5d8r: 2.50A resolution structure of BfrB (E81A) from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-08-17
Authors: Lovell, S., Battaile, K.P., Wang, Y., Yao, H., Rivera, M.
PDB entry 5d8s: 2.55A resolution structure of BfrB (E85A) from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2015-08-17
Authors: Lovell, S., Battaile, K.P., Wang, Y., Yao, H., Rivera, M.
PDB entry 5d8t: RNA octamer containing (S)-5' methyl, 2'-F U.
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2015-08-17
Authors: Harp, J.M., Egli, M.
PDB entry 5d8u: 2009 H1N1 PA endonuclease mutant E119D in complex with L-742,001
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2015-08-18
Authors: Kumar, G., White, S.W.
PDB entry 5d8v: Ultra-high resolution structure of high-potential iron-sulfur protein
Classification: METAL BINDING PROTEIN
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 0.48 Å
Deposited: 2015-08-18
Authors: Hirano, Y., Takeda, K., Miki, K.
PDB entry 5d8w: Structrue of a lucidum protein
Classification: HYDROLASE
Source organism: Ganoderma lucidum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2015-08-18
Authors: Guo, R., Li, Q., Shang, N., Liu, G., Ko, T.P., Chen, C.C., Liu, W.