LiteFold/PDB huggingface dataset:
PDB entry 9e9d: Structure of full length AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 in complex with anti-miR 17 oligonucleotide RGLS4326
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-11-08
Authors: Yen, L.Y., Gangwar, S.P., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 9e9e: Structure of AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 (LBD-TMD) in complex with anti-miR 17 oligonucleotide RGLS4326
Classification: SIGNALING PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-11-08
Authors: Yen, L.Y., Gangwar, S.P., Yelshanskaya, M.V., Sobolevsky, A.I.
PDB entry 9e9f: Pseudomonas aeruginosa MexY
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2024-11-08
Authors: Gregor, W.D., Maharjan, R., Zhang, Z., Yu, E.W.
PDB entry 9e9g: Heligmosomoides polygyrus TGF-beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human TGF-beta Type II Receptor Extracellular Domain
Classification: IMMUNOSUPPRESSANT
Source organism: Heligmosomoides polygyrus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-11-08
Authors: White, S.E., Schwartze, T.A., Hinck, A.P.
PDB entry 9e9h: Crystal structure of human KRAS G12C covalently bound to DEL triazine compound 5
Classification: SIGNALING PROTEIN,ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-11-08
Authors: Mohr, C.
PDB entry 9e9i: Crystal Structure of human KRAS G12C covalently bound to nopinone-derived naphthol compound 21
Classification: SIGNALING PROTEIN,ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2024-11-08
Authors: Mohr, C.
PDB entry 9e9j: L-allo-threonine aldolase from Thermotoga maritima, N308E-Y87A-R122G-P121D Mutant
Classification: LYASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-11-08
Authors: Wang, S., Jeffrey, P.D., Sorigue, D., Hyster, T.K.
PDB entry 9e9l: Vanadate-bound Putative Ancestral Protein Tyrosine Phosphatase ShufPTP - Intermediate p-loop Conformation
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-11-08
Authors: Denson, J.M., Shen, R., Hengge, A.C., Johnson, S.J.
PDB entry 9e9m: Ligand Free Putative Ancestral Protein Tyrosine Phosphatase ShufPTP - C93-Cyclic Sulfenamide - Intermediate p-loop Conformation
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-11-08
Authors: Denson, J.M., Shen, R., Hengge, A.C., Johnson, S.J.
PDB entry 9e9n: Ligand Free Putative Ancestral Protein Tyrosine Phosphatase ShufPTP - Lowest p-loop Conformation
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-11-08
Authors: Denson, J.M., Shen, R., Hengge, A.C., Johnson, S.J.
PDB entry 9e9o: SARS-CoV-2 SL5 crystal structure Cesium derivative
Classification: RNA
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2024-11-08
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9e9q: SARS-CoV-2 SL5 crystal structure native
Classification: RNA
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.33 Å
Deposited: 2024-11-08
Authors: Jones, C.P., Ferre-D'Amare, A.R.
PDB entry 9e9r: The Structure of ApoB100 from Human Low-Density Lipoprotein
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2024-11-08
Authors: Berndsen, Z.T., Cassidy, C.K.
PDB entry 9e9s: Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-11-08
Authors: Davoudinasab, B., Cherezov, V., Han, G.W., KIm, D.
PDB entry 9e9u: Vanadate-bound Putative Ancestral Protein Tyrosine Phosphatase ShufPTP - Highest p-loop Conformation
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-11-08
Authors: Denson, J.M., Shen, R., Hengge, A.C., Johnson, S.J.
PDB entry 9e9v: Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Classification: VIRAL PROTEIN/RNA
Source organism: Escherichia coli BL21(DE3); Homo sapiens; Human immunodeficiency virus 1; Pan troglodytes
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-11-08
Authors: Matsuo, H., Skorupka, K.A.
PDB entry 9e9w: Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with S217622
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-11-08
Authors: Zhou, X.L., Zhang, J., Li, J.
PDB entry 9e9x: Cryo-EM structure of alpha-synuclein filaments derived from the temporal cortex of the case of atypical multiple system atrophy
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-09
Authors: Enomoto, M., Martinez-Valbuena, I., Forrest, S.L., Xu, X., Munhoz, R., Li, J., Rogaeva, E., Lang, A.E., Kovacs, G.G.
PDB entry 9e9y: WEEV McMillan VLP in complex with VLDLR LA(1-2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2024-11-09
Authors: Raju, S., Diamond, M.S., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9e9z: SINV-WEEV Fleming in complex with VLDLR LA(1-2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2024-11-09
Authors: Raju, S., Diamond, M.S., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9ea0: Structure of the prefusion HKU5-19s Spike trimer (conformation 1)
Classification: VIRAL PROTEIN
Source organism: Pipistrellus bat coronavirus HKU5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2024-11-09
Authors: Park, Y.J., Gen, R., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9ea1: Crystal structure of PrnB in complex with 7-Cl-Trp and cyanide
Classification: OXIDOREDUCTASE
Source organism: Flavobacteriales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2024-11-09
Authors: Li, B., Wang, Y.
PDB entry 9ea2: T4 Bacteriophage Replicative Polymerase Captured in Polymerase Exchange State 2
Classification: replication/DNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-11-10
Authors: Li, H., Feng, X.
PDB entry 9ea3: T4 bacteriophage replicative holoenzyme containing triple mutations D75R, Q430E, and K432E in the exonuclease-deficient polymerase
Classification: Transferase/DNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2024-11-10
Authors: Li, H., Feng, X.
PDB entry 9ea4: Structure of Citrobacter BubCD
Classification: LIGASE
Source organism: Citrobacter sp. RHBSTW-00271
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-11-10
Authors: Ye, Q., Corbett, K.D.
PDB entry 9ea5: Structure of Citrobacter BubCD D104A mutant
Classification: LIGASE
Source organism: Citrobacter sp. RHBSTW-00271
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-11-10
Authors: Ye, Q., Corbett, K.D.
PDB entry 9ea6: T4 Bacteriophage Replicative Polymerase Captured in Polymerase Exchange State 3
Classification: Replication/DNA
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2024-11-10
Authors: Li, H., Feng, X.
PDB entry 9ea7: The Structure of ApoB100 from Human Low-Density Lipoprotein
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2024-11-10
Authors: Berndsen, Z.T., Cassidy, C.K.
PDB entry 9ea8: Citrobacter BubCD(D104A)-BubA(155-229) complex
Classification: LIGASE
Source organism: Citrobacter sp. RHBSTW-00271
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-11-10
Authors: Ye, Q., Corbett, K.D.
PDB entry 9ea9: Crystal structure of BoNT/A-NTNH-HA70 -VHH_F12-VHH_H7-Fab_NTNH complex
Classification: TOXIN/IMMUNE SYSTEM
Source organism: Clostridium botulinum; Mus sp.; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2024-11-10
Authors: Lam, K.H., Gao, L., Jin, R.
PDB entry 9eaa: Seneca valley virus Altered particle at acidic condition (A-particle[C])
Classification: VIRUS
Source organism: Seneca Valley virus USA/SSV-001
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-11-10
Authors: Kumaran, R., Bostina, M.
PDB entry 9eab: Seneca valley virus Altered particle at physiological condition (A-particle[P])
Classification: VIRUS
Source organism: Seneca Valley virus USA/SSV-001
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-11-10
Authors: Kumaran, R., Bostina, M.
PDB entry 9eac: Seneca valley virus Empty rotated particle at acidic condition (ER-particle[C])
Classification: VIRUS
Source organism: Seneca Valley virus USA/SSV-001
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.27 Å
Deposited: 2024-11-10
Authors: Kumaran, R., Bostina, M.
PDB entry 9ead: Seneca valley virus Empty rotated particle at physiological condition (ER-particle[P])
Classification: VIRUS
Source organism: Seneca Valley virus USA/SSV-001
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.41 Å
Deposited: 2024-11-10
Authors: Kumaran, R., Bostina, M.
PDB entry 9eae: Structure of Citrobacter BubCD(D104A)-BubB
Classification: LIGASE
Source organism: Citrobacter sp. RHBSTW-00271
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2024-11-10
Authors: Ye, Q., Corbett, K.D.
PDB entry 9eaf: Carboxyspermidine decarboxylase from Clostridium leptum
Classification: BIOSYNTHETIC PROTEIN
Source organism: [Clostridium] leptum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2024-11-10
Authors: Jones, S.J., Bell, D.J., McFarlane, J.S.
PDB entry 9eag: The Structure of ApoB100 from Human Low-Density Lipoprotein
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2024-11-11
Authors: Berndsen, Z.T., Cassidy, C.K.
PDB entry 9eah: Structure of nanobody AT209 in complex with the olmesartan-bound angiotensin II type I receptor (AT1R)
Classification: MEMBRANE PROTEIN
Source organism: Camelidae; Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-11
Authors: Skiba, M.A., Kruse, A.C.
PDB entry 9eai: Structure of nanobody AT206 in complex with the losartan-bound angiotensin II type I receptor (AT1R)
Classification: MEMBRANE PROTEIN
Source organism: Camelidae; Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-11
Authors: Skiba, M.A., Liu, J., Kruse, A.C.
PDB entry 9eaj: Structure of nanobody AT206 in complex with the angiotensin II type I receptor (AT1R)
Classification: MEMBRANE PROTEIN
Source organism: Camelidae; Escherichia coli; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-11-11
Authors: Skiba, M.A., Kruse, A.C.
PDB entry 9eak: SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State I - pre-activation)
Classification: Hydrolase/DNA/RNA
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-11-11
Authors: Kiernan, K.A., Taylor, D.W.
PDB entry 9eal: SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State II - precleavage)
Classification: DNA BINDING PROTEIN
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-11-11
Authors: Kiernan, K.A., Taylor, D.W.
PDB entry 9eam: Coronin-7 CA bound to Arp2/3 complex
Classification: PROTEIN BINDING
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-11-11
Authors: Fregoso, F.E., Barrie, K.R., Dominguez, R.
PDB entry 9ean: Murine norovirus allosteric escape mutant D348E
Classification: VIRUS
Source organism: Murine norovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-11-11
Authors: Smith, T.J., Sherman, M.
PDB entry 9eao: Murine norovirus allosteric V339I escape mutant + calcium
Classification: VIRUS
Source organism: Murine norovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-11-11
Authors: Smith, T.J., Sherman, M.B.
PDB entry 9eap: MNV Allosteric escape mutant V339I + GCDCA
Classification: VIRUS
Source organism: Murine norovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-11-11
Authors: Smith, T.J., Sherman, M.
PDB entry 9eaq: Murine Norovirus MNV-1 with allosteric escape mutation V339I
Classification: VIRUS
Source organism: Murine norovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-11-11
Authors: Smith, T.J., Sherman, M.
PDB entry 9ear: CHD1-nucleosome complex (closed state)
Classification: TRANSLOCASE
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-11
Authors: James, A.M., Farnung, L.
PDB entry 9eat: High-Resolution Structure of Escherichia coli Carbonic Anhydrase 2 in Space Group P4(2)2(1)2
Classification: LYASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2024-11-11
Authors: Rankin, M.R., Smith, J.L.
PDB entry 9eau: RRV DKTA VLP in complex with VLDLR-LBD-Fc
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Ross river virus (STRAIN T48)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-11-11
Authors: Raju, S., Diamond, M.S., Fremont, D.H., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9eav: Structure of Citrobacter BubCD(D104A/Y370F)-BubB-BubA(155-229)
Classification: LIGASE
Source organism: Citrobacter sp. RHBSTW-00271
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-11-11
Authors: Ye, Q., Corbett, K.D.
PDB entry 9eaw: Escherichia coli Carbonic Anhydrase 2 in Space Group P2(1)2(1)2
Classification: LYASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2024-11-11
Authors: Rankin, M.R., Smith, J.L.
PDB entry 9eb2: Chicken YF1*7.1 molecule presenting an endogenous N-myristoylated amino acid
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-11-11
Authors: Khandokar, Y., Wang, C.J.H., Rossjohn, J., Le Nours, J.
PDB entry 9eb3: Chicken YF1.7*1 presenting N-myristoylated glycine
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-11-11
Authors: Khandokar, Y., Wang, C.J.H., Rossjohn, J., Le Nours, J.
PDB entry 9eb4: Chicken YF1.7*1 presenting N-palmitoylated glycine
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-11-11
Authors: Khandokar, Y., Wang, C.J., Rossjohn, J., Le Nours, J.
PDB entry 9eb5: Chicken YF1.7*1 presenting myristoylated peptide derived from tegument protein MDV023
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-11-11
Authors: Khandokar, Y., Wang, C.J.H., Rossjohn, J., Le Nours, J.
PDB entry 9eb6: Chicken YF1.7*1 presenting myristoylated peptide derived from tegument protein CIRC
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-11-11
Authors: Khandokar, Y., Wang, C.J.H., Rossjohn, J., Le Nours, J.
PDB entry 9eb7: Crystal Structure of Biotin Carboxylase from Ankistrodesmus
Classification: LIGASE
Source organism: Ankistrodesmus falcatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-11-12
Authors: Leonardo, D.A.C., Vargas, J.A.S., Mavila, A.M., Furtado, A.A., Pereira, H.M., Garratt, R.C., Castro, J.C.
PDB entry 9eb8: Crystal Structure of Biotin Carboxylase from Ankistrodesmus in Complex with ADP
Classification: LIGASE
Source organism: Ankistrodesmus falcatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-11-12
Authors: Leonardo, D.A.C., Vargas, J.A.S., Mavila, A.M., Furtado, A.A., Pereira, H.M., Garratt, R.C., Castro, J.C.
PDB entry 9eb9: Human TRPML1 bound to Sybody94
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-11-12
Authors: Pumroy, R.P., Salphati, S.P., Moiseenkova-Bell, V.Y., Newstead, S.
PDB entry 9eba: Human TRPML1 bound to Sybody57
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-12
Authors: Pumroy, R.P., Christensen, C.R., Salphati, S.P., Moiseenkova-Bell, V.Y., Newstead, S.
PDB entry 9ebe: Solution structure of sigma-S-GVIIIA conotoxin extracted from Conus geographus
Classification: NEUROPEPTIDE
Source organism: Conus geographus
Experimental method: SOLUTION NMR
Deposited: 2024-11-12
Authors: Peck, Y., Daly, N.L.
PDB entry 9ebf: FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, borolane-based compound Q41 bound in crystal form 6
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-11-12
Authors: Fellner, M.
PDB entry 9ebg: Crystal structure of the hERalpha LBD complexed with androstenediol and SRC 2-2 peptide
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2024-11-12
Authors: Pederick, J.L., Bruning, J.B.
PDB entry 9ebh: Human adenosine A3 receptor Gi1 complex bound to adenosine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-11-12
Authors: Zhang, L., Mobbs, J.I., Glukhova, A., Thal, D.M.
PDB entry 9ebi: Human adenosine A3 receptor Gi complex (mini-Gsi chimera) bound to Piclidenoson (CF101, IB-MECA)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-11-12
Authors: Zhang, L., Mobbs, J.I., Glukhova, A., Thal, D.M.
PDB entry 9ebk: Piperazate synthase (PipS) in complex with haem
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces griseus subsp. griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08007 Å
Deposited: 2024-11-12
Authors: Higgins, M.A., Ryan, K.S.
PDB entry 9ebl: Crystal structure of the hERbeta LBD complexed with androstenediol and SRC 2-2 peptide (crystal form 1)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-11-12
Authors: Pederick, J.L., Bruning, J.B.
PDB entry 9ebm: Piperazate synthase (PipS) in complex with haem and N5-OH-L-ornithine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces griseus subsp. griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-11-12
Authors: Higgins, M.A., Ryan, K.S.
PDB entry 9ebn: Peptide 1 (GLP-1 (Aib16, ACPC18)) bound to GLP-1R/Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2024-11-12
Authors: Cary, B.P., Hager, M.V., Mariam, Z., Morris, R.K., Belousoff, M.J., Deganutti, G., Wootten, D., Sexton, P.M., Gellman, S.H.
PDB entry 9ebo: Peptide 2 (GLP-1 (ACPC18)) bound to GLP-1R/Gs complex (conformer 1)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-11-12
Authors: Cary, B.P., Hager, M.V., Mariam, Z., Morris, R.K., Belousoff, M.J., Deganutti, G., Wootten, D., Sexton, P.M., Gellman, S.H.
PDB entry 9ebp: Structure of the Bacillus subtilis yjdF riboswitch complexed with lumichrome in the presence of iridium hexammine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-11-12
Authors: Batey, R.T., Spradlin, S.F.
PDB entry 9ebq: Peptide 2 (GLP-1 (ACPC18)) bound to GLP-1R/Gs complex (conformer 2)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-11-12
Authors: Cary, B.P., Hager, M.V., Mariam, Z., Morris, R.K., Belousoff, M.J., Deganutti, G., Wootten, D., Sexton, P.M., Gellman, S.H.
PDB entry 9ebr: The structure of NiaR from Thermotoga maritima bound to nicotinic acid
Classification: DNA BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-11-13
Authors: Glasfeld, A., Cheng, D.W.C., Li, Y.
PDB entry 9ebs: Cryo-EM structure of USP1-UAF1-Ubiquitin in complex with TNG348
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-11-13
Authors: Whittington, D.A.
PDB entry 9ebt: CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Classification: SIGNALING PROTEIN
Source organism: Thermoanaerobaculum aquaticum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2024-11-13
Authors: Zhao, Y., Whyms, C.T., Li, H.
PDB entry 9ebu: Wild-type EsCas13d binary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: [Eubacterium] siraeum DSM 15702
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-11-13
Authors: Chou, C.W., Finkelstein, I.J.
PDB entry 9ebv: Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with lumichrome
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.519 Å
Deposited: 2024-11-13
Authors: Batey, R.T., Spradlin, S.F.
PDB entry 9ebw: Chimeric fluorescence biosensor formed from a lactate-binding protein and GFP, bound to lactate
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria; Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2024-11-13
Authors: Horwitz, S.M., Ambarian, J.A., Jones, R., Waidmann, L., Davis, K.M.
PDB entry 9ebx: Chimeric fluorescence biosensor formed from a lactate-binding protein and GFP
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria; Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-11-13
Authors: Horwitz, S.M., Ambarian, J.A., Waidmann, L., Davis, K.M.
PDB entry 9eby: Crystal structure of RufO in complex with MRYLH
Classification: OXIDOREDUCTASE
Source organism: Streptomyces atratus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2024-11-13
Authors: Nolan, K., Wang, Y.
PDB entry 9ebz: Escherichia coli Carbonic Anhydrase 2 in Space Group C222(1)
Classification: LYASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2024-11-13
Authors: Rankin, M.R., Smith, J.L.
PDB entry 9ec0: Structure of the CARMIL dimer bound to Capping Protein
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-11-13
Authors: Barrie, K.R., Dominguez, R.
PDB entry 9ec1: The Structure of Human Dystrophin Spectrin Repeat 24
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2024-11-13
Authors: Streeter, O., Shi, K., Bui, H.N., Ervasti, J.M., Evans III, R.L., Muretta, J.M.
PDB entry 9ec2: Crystal structure of SAMHD1 dimer bound to an inhibitor obtained from high-throughput chemical tethering to the guanine antiviral acyclovir
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2024-11-13
Authors: Egleston, M., Dong, L., Howlader, A.H., Bhat, S., Orris, B., Lopez-Rovira, L.M., Bianchet, M.A., Greenberg, M.M., Stivers, J.T.
PDB entry 9ec4: Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with chelerythrine
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.853 Å
Deposited: 2024-11-13
Authors: Batey, R.T., Spradlin, S.F.
PDB entry 9ec5: Streptavidin-S112C-L124F bound to Cu(II)dpea cofactor, containing S-nitrosocysteine modification
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-11-13
Authors: Minnetian, N.M., Follmer, A.H., Borovik, A.S.
PDB entry 9ec7: Cryo-EM structure of avian tetrameric IgA-Fc/J chain
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2024-11-13
Authors: Schneider, R.M., Stadtmueller, B.M.
PDB entry 9ec8: Active state of wild-type EsCas13d ternary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: [Eubacterium] siraeum DSM 15702
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-11-13
Authors: Chou, C.W., Finkelstein, I.J.
PDB entry 9ec9: Intermediate state of wild-type EsCas13d ternary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: [Eubacterium] siraeum DSM 15702
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-11-13
Authors: Chou, C.W., Finkelstein, I.J.
PDB entry 9eca: Intermediate state of wild-type EsCas13d ternary complex with C4A mismatch
Classification: RNA BINDING PROTEIN/RNA
Source organism: [Eubacterium] siraeum DSM 15702
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-11-13
Authors: Chou, C.W., Finkelstein, I.J.
PDB entry 9ecb: Intermediate state of wild-type EsCas13d ternary complex with U10G mismatch
Classification: RNA BINDING PROTEIN/RNA
Source organism: [Eubacterium] siraeum DSM 15702
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-11-13
Authors: Chou, C.W., Finkelstein, I.J.
PDB entry 9ecc: Inactive state of wild-type EsCas13d ternary complex with U10G mismatch
Classification: RNA BINDING PROTEIN/RNA
Source organism: [Eubacterium] siraeum DSM 15702
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2024-11-13
Authors: Chou, C.W., Finkelstein, I.J.
PDB entry 9ecd: Active state of wild-type EsCas13d ternary complex with U10G mismatch
Classification: RNA BINDING PROTEIN/RNA
Source organism: [Eubacterium] siraeum DSM 15702
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-11-13
Authors: Chou, C.W., Finkelstein, I.J.
PDB entry 9ece: Inactive state of wild-type EsCas13d ternary complex with C4A mismatch
Classification: RNA BINDING PROTEIN/RNA
Source organism: [Eubacterium] siraeum DSM 15702
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-11-14
Authors: Chou, C.W., Finkelstein, I.J.
PDB entry 9ecf: Crystal structure of the hERbeta LBD complexed with androstenediol and SRC 2-2 peptide (crystal form 2)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-11-14
Authors: Pederick, J.L., Bruning, J.B.
PDB entry 9ecg: PANK3 complex structure with compound PZ-5588
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.092 Å
Deposited: 2024-11-14
Authors: Yun, M., Lee, R.E.
PDB entry 9ech: PANK3 complex structure with compound PZ-5578
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.043 Å
Deposited: 2024-11-14
Authors: Yun, M., Lee, R.E.
PDB entry 9eci: Crystal structure of a humanized 5E5 antibody
Classification: IMMUNE SYSTEM
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-11-14
Authors: Li, W., Evans, S.V.
PDB entry 9ecj: Human P2RY8 bound to S-geranylgeranyl-L-glutathione in complex with miniG13
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-11-14
Authors: Billesboelle, C.B., Manglik, A.
PDB entry 9ecl: Structure of the human integrin beta2 transmembrane domain
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-11-14
Authors: Ulmer, T.S., Vu, H.N., Situ, A.J.
PDB entry 9ecm: Structure of the human integrin alphaX transmembrane domain
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-11-14
Authors: Ulmer, T.S., Vu, H.N., Situ, A.J.
PDB entry 9ecn: M. acetivorans MCR containing a 2-methylglutamine modification
Classification: TRANSFERASE
Source organism: Methanosarcina acetivorans C2A
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-11-14
Authors: Nair, S.K., Borkar, J.
PDB entry 9eco: E. coli DnaB bound to three DnaG C-terminal domains, ssDNA, ADP and AlF4
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-11-14
Authors: Oakley, A.J., Xu, Z.Q.
PDB entry 9ecp: Structure of the native human NCP purified from HEK293 cells
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.91 Å
Deposited: 2024-11-14
Authors: Reid, X.J., Sobti, M., Low, J.K.K., Stewart, A.G., Mackay, J.P.
PDB entry 9ecq: NMR solution structure of tRNA-Arg-UCU-4-1 anticodon stem loop with no chemical modifications
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-11-15
Authors: Berger, K.D., Puthenpeedikakkal, A.M.K., Matthews, D.H., Fu, D.
PDB entry 9ecr: NMR solution structure of tRNA-Arg-UCU-4-1 anticodon stem loop with m3C modification at position 32
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-11-15
Authors: Berger, K.D., Puthenpeedikakkal, A.M.K., Matthews, D.H., Fu, D.
PDB entry 9ecs: C1B DOMAIN OF PROTEIN KINASE C IN COMPLEX WITH BRYOSTATIN-1
Classification: LIPID BINDING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2024-11-15
Authors: Katti, S.S., Krieger, I.V., Sacchettini, J.C., Igumenova, T.
PDB entry 9ect: Crystal Structure of the Gemella haemolysans Immunoglobulin A1 Protease Trypsin-Like Domain
Classification: UNKNOWN FUNCTION
Source organism: Gemella haemolysans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-11-15
Authors: Tran, N., Holyoak, T.
PDB entry 9ecu: Crystal structure of the inactive BRAF/MEK1 complex bound to IK-595
Classification: ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2024-11-15
Authors: Yang, A.
PDB entry 9ecv: CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Classification: VIRAL PROTEIN,TRANSFERASE/INHIBITOR
Source organism: human respiratory syncytial virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2024-11-15
Authors: Yin, Y., Tran, M.T., Yu, X., Jonckers, T., Carney, C.
PDB entry 9ecx: Crystal structure of the SARS-CoV-2 NTD-targeted neutralizing antibody WRAIR-2008
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2024-11-15
Authors: Jensen, J.L., Joyce, M.G.
PDB entry 9ecy: Crystal structure of the SARS-CoV-2 NTD-targeted neutralizing antibody WRAIR-2039
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2024-11-15
Authors: Sankhala, R.S., Jensen, J.L., Joyce, M.G.
PDB entry 9ecz: Cryo-EM structure of SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 (focused refinement of NTD and WRAIR-2008)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2024-11-15
Authors: Jensen, J.L., Thomas, P.V., Joyce, M.G.
PDB entry 9ed0: Human LARP1 bound to the 40S small ribosomal subunit
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-11-15
Authors: Dong, W., Kaufhold, R., Brito Querido, J.
PDB entry 9ed1: Cryo-EM structure of the human KCa3.1/calmodulin channel in complex with Ca2+ and 1,4-dihydropyridine (DHP-103)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-11-15
Authors: Nam, Y.W., Zhang, M.
PDB entry 9ed2: CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: human respiratory syncytial virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2024-11-15
Authors: Yin, Y., Tran, M.T., Yu, X., Jonckers, T., Carney, S.
PDB entry 9ed3: Yeast Rad51 in complex with ssDNA and ADP-aluminium fluoride
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2024-11-15
Authors: Liu, J., Gore, S., Heyer, W.-D.
PDB entry 9ed4: A composite map of mTORC1-Rag-Ragultor-4EBP1 on membrane
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-11-15
Authors: Cui, Z., Hurley, J.
PDB entry 9ed6: CryoEM map of the mLST8-Rag-Ragultor subcomplex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2024-11-15
Authors: Cui, Z., Hurley, J.
PDB entry 9ed7: Active state of mTOR on membrane
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-11-16
Authors: Cui, Z., Hurley, J.
PDB entry 9ed8: Intermediate state of mTOR on membrane
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2024-11-16
Authors: Cui, Z., Hurley, J.
PDB entry 9ed9: SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State III - checkpoint)
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-11-16
Authors: Kiernan, K.A., Taylor, D.W.
PDB entry 9eda: SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State IV - product)
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2024-11-16
Authors: Kiernan, K.A., Taylor, D.W.
PDB entry 9edb: SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State V - dissociated)
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-11-16
Authors: Kiernan, K.A., Taylor, D.W.
PDB entry 9edc: Reset Type-I Protein Kinase A Holoenzyme
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2024-11-16
Authors: Venkatakrishnan, V., Buckley, T., Laremore, T.N., Armache, J.P., Anand, G.S.
PDB entry 9edd: Reset Type-I Protein Kinase A Holoenzyme
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2024-11-16
Authors: Venkatakrishnan, V., Buckley, T., Laremore, T.N., Armache, J.P., Anand, G.S.
PDB entry 9ede: Reset Type-I Protein Kinase A Holoenzyme
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2024-11-16
Authors: Venkatakrishnan, V., Buckley, T., Laremore, T.N., Armache, J.P., Anand, G.S.
PDB entry 9edg: Streptavidin-WT bound to Cu(II)dpea cofactor
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-11-17
Authors: Minnetian, N.M., Borovik, A.S., Follmer, A.H.
PDB entry 9edh: Streptavidin-S112C-T114F bound to Cu(II)dpea cofactor
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-11-17
Authors: Minnetian, N.M., Borovik, A.S., Follmer, A.H.
PDB entry 9edi: Streptavidin-S112C-L124A bound to Cu(II)dpea cofactor
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-11-17
Authors: Minnetian, N.M., Borovik, A.S., Follmer, A.H.
PDB entry 9edj: FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, unbound dimer crystal form 9
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-11-17
Authors: Fellner, M.
PDB entry 9edk: Streptavidin-S112C-T114V bound to Cu(II)dpea cofactor
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-11-17
Authors: Minnetian, N.M., Borovik, A.S., Follmer, A.H.
PDB entry 9edl: Crystal structure of Francisella tularensis DsbA1
Classification: OXIDOREDUCTASE
Source organism: Francisella tularensis subsp. tularensis SCHU S4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-11-17
Authors: Penning, S., Heras, B., Paxman, J.J.
PDB entry 9edm: GII.9-VA97207 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Human calicivirus NLV/VA97207/1997
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-11-17
Authors: Holroyd, D.L., Kumar, A., Bruning, J.B., Hansman, G.S.
PDB entry 9edn: GII.23: Loreto1847 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2024-11-17
Authors: Holroyd, D.L., Kumar, A., Bruning, J.B., Hansman, G.S.
PDB entry 9edo: GII.27: Loreto0959 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-11-17
Authors: Holroyd, D.L., Kumar, A., Bruning, J.B., Hansman, G.S.
PDB entry 9edp: GVIII-Chiba040502 norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Chiba-040502 virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-11-17
Authors: Holroyd, D.L., Kumar, A., Bruning, J.B., Hansman, G.S.
PDB entry 9edq: GX/NPIH26 bat norovirus protruding domain
Classification: VIRAL PROTEIN
Source organism: Bat norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2024-11-17
Authors: Holroyd, D.L., Kumar, A., Bruning, J.B., Hansman, G.S.
PDB entry 9edr: Tubulin Cofactors D,E,G,C and Tubulin complex -- TBCC N Terminus Bound to Tubulin
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-11-17
Authors: Taheri, A., Al-bassam, J.
PDB entry 9eds: Tubulin cofactors D,E,G,C bound to tubulin dimer -- TBCC N terminus unbound
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-11-18
Authors: Taheri, A., Al-bassam, J.
PDB entry 9edt: Tubulin cofactors D,E,G bound to tubulin dimer
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-11-18
Authors: Taheri, A., Al-bassam, J.
PDB entry 9edu: Streptavidin-S112C bound to Cu(II)dpea cofactor
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-11-18
Authors: Minnetian, N.M., Borovik, A.S., Follmer, A.H.
PDB entry 9edv: Crystal structure of Yck2 from Candida albicans in complex with inhibitor 1e: 2-(4-fluorophenyl)-3-(pyridin-4-yl)imidazo[1,2-a]pyridine-7-carbonitrile
Classification: TRANSFERASE/INHIBITOR
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-11-18
Authors: Stogios, P.J., Whitesell, L., Cowen, L.E., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9edw: Crystal structure of Yck2 from Candida albicans in complex with inhibitor 1f: 7-fluoro-2-(4-fluorophenyl)-3-(pyridin-4-yl)imidazo[1,2-a]pyridine
Classification: TRANSFERASE/INHIBITOR
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-11-18
Authors: Stogios, P.J., Whitesell, L., Cowen, L.E., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9edx: Crystal structure of Yck2 from Candida albicans in complex with inhibitor 2a: 2-(4-fluorophenyl)-3-(pyridin-4-yl)pyrazolo[1,5-a]pyridine-6-carbonitrile
Classification: TRANSFERASE/INHIBITOR
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2024-11-18
Authors: Stogios, P.J., Whitesell, L., Cowen, L.E., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9edy: Crystal structure of Yck2 from Candida albicans in complex with inhibitor 2b: 6-fluoro-2-(4-fluorophenyl)-3-(pyridin-4-yl)pyrazolo[1,5-a]pyridine
Classification: TRANSFERASE/INHIBITOR
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-11-18
Authors: Stogios, P.J., Whitesell, L., Cowen, L.E., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9edz: HIV CA - GLFG peptide (4 mM)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-11-18
Authors: Melcak, I., Sarafianos, S.G.
PDB entry 9ee0: HIV CA - GLFG peptide (9 mM)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-11-18
Authors: Melcak, I., Sarafianos, S.G.
PDB entry 9ee1: HIV CA - GLFG peptide (43 mM)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-11-18
Authors: Melcak, I., Sarafianos, S.G.
PDB entry 9ee2: HIV CA - FSFG peptide (14 mM)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2024-11-18
Authors: Melcak, I., Sarafianos, S.G.
PDB entry 9ee3: HIV CA - FG peptide (14 mM)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-11-18
Authors: Melcak, I., Sarafianos, S.G.
PDB entry 9ee4: HIV CA - FG peptide (34 mM)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-11-18
Authors: Melcak, I., Sarafianos, S.G.
PDB entry 9ee5: Cryo-EM structure of the ONO2550289-bound prostaglandin D2 receptor (DP1)-bRIL-Fab complex
Classification: MEMBRANE PROTEIN/Immune System
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-11-18
Authors: Davoudinasab, B., Cherezov, V., Han, G.W.
PDB entry 9ee7: Folded domains of Xrs2 from S.cerevisiae
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2024-11-18
Authors: Vigneswaran, A., Shi, K., Evans, R., Aihara, H., Latham, M.P.
PDB entry 9ee8: Cryo-EM structure of the adenosine A2A receptor intermediate bound to a miniGs heterotrimer
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2024-11-18
Authors: Bi, M., Wang, X., Ye, L., Cheng, Y.
PDB entry 9ee9: Cryo-EM structure of the adenosine A2A receptor intermediate bound to a miniGs heterotrimer
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-11-18
Authors: Bi, M., Wang, X., Ye, L., Cheng, Y.
PDB entry 9eea: Cryo-EM structure of the adenosine A2A receptor intermediate bound to a miniGs heterotrimer
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2024-11-18
Authors: Bi, M., Wang, X., Ye, L., Cheng, Y.
PDB entry 9eeb: Tubulin cofactors D,E,G bound to tubulin dimer
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-11-18
Authors: Taheri, A., Al-bassam, J.
PDB entry 9eec: X-ray crystallographic structure of a beta-hairpin peptide mimic derived from Abeta 16-36 ORN-LYS-LEU-VAL-H7V-PHE-ALA-GLU-ORN-ALA-ILE-ILE-GLY-LEU-MET-VAL
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2024-11-18
Authors: Kreutzer, A.G., Zhu, J., Nowick, J.S.
PDB entry 9eed: The Hanks-type kinase PknS from Xanthomonas citri bound to CHIR-124
Classification: TRANSFERASE
Source organism: Xanthomonas citri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-11-19
Authors: Lima, L.P., Alvarez-Martinez, C.E., Massirer, K.B., Counago, R.M.
PDB entry 9eee: Room-temperature X-ray structure of HIV-1 protease in complex with GRL-10624A inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-11-19
Authors: Kovalevsky, A., Gerlits, O., Ghosh, A.
PDB entry 9eef: Human Kv1.3 mutant - G427H
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2024-11-19
Authors: Selvakumar, P., Swartz, K.J.