LiteFold/PDB huggingface dataset:
PDB entry 5ydr: Structure of DNMT1 RFTS domain in complex with ubiquitin
Classification: PROTEIN BINDING/TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.003 Å
Deposited: 2017-09-14
Authors: Qian, C.
PDB entry 5ydt: Remodeled Utp30 in 90S pre-ribosome (Mtr4-depleted, Enp1-TAP)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2017-09-14
Authors: Ye, K., Zhu, X., Hu, J.
PDB entry 5ydu: Crystal structure of Utp30
Classification: RIBOSOMAL PROTEIN
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 2.646 Å
Deposited: 2017-09-14
Authors: Hu, J., Zhu, X., Ye, K.
PDB entry 5ydv: Regulatory domain of HypT from Salmonella typhimurium complexed with HOCl (HOCl-bound form)
Classification: DNA BINDING PROTEIN
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.752 Å
Deposited: 2017-09-14
Authors: Jo, I., Hong, S., Ahn, J., Ha, N.C.
PDB entry 5ydw: Full-length structure of HypT from Salmonella typhimuriuma (hypochlorite-specific LysR-type transcriptional regulator)
Classification: DNA BINDING PROTEIN
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2017-09-15
Authors: Jo, I., Hong, S., Ahn, J., Ha, N.C.
PDB entry 5ydx: NMR structure of YAP1-2 WW1 domain with LATS1 PPxY motif complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-09-15
Authors: Fan, J.S., Sivaraman, J.
PDB entry 5ydy: NMR structure of YAP1-2 WW2 domain with LATS1 PPxY motif complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-09-15
Authors: Fan, J.S., Sivaraman, J.
PDB entry 5ydz: structure of endo-lysosomal TRPML1 channel inserting into amphipol: state 1
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2017-09-15
Authors: Yang, M., Gao, N.
PDB entry 5ye1: structure of endo-lysosomal TRPML1 channel inserting into amphipol: state 2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2017-09-15
Authors: Yang, M., Gao, N.
PDB entry 5ye2: mammalian endo-lysosomal TRPML1 channel inserting into amphipol
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2017-09-15
Authors: Yang, M., Gao, N.
PDB entry 5ye3: Crystal structure of the complex of di-acetylated histone H4 and 2A7D9 Fab fragment
Classification: NUCLEAR PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-09-15
Authors: Matsuda, T., Ito, T., Wakamori, M., Umehara, T.
PDB entry 5ye4: Crystal structure of the complex of di-acetylated histone H4 and 1A9D7 Fab fragment
Classification: NUCLEAR PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.799 Å
Deposited: 2017-09-15
Authors: Matsuda, T., Ito, T., Wakamori, M., Umehara, T.
PDB entry 5ye5: structure of endo-lysosomal TRPML1 channel inserting into nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2017-09-15
Authors: Yang, M., Gao, N.
PDB entry 5ye7: The crystal structure of Lp-PLA2 in complex with a novel inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.312 Å
Deposited: 2017-09-15
Authors: Liu, Q.F., Xu, Y.C.
PDB entry 5ye8: The crystal structure of Lp-PLA2 in complex with a novel inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.851 Å
Deposited: 2017-09-15
Authors: Liu, Q.F., Xu, Y.C.
PDB entry 5ye9: The crystal structure of Lp-PLA2 in complex with a novel inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.876 Å
Deposited: 2017-09-15
Authors: Liu, Q.F., Xu, Y.C.
PDB entry 5yea: The crystal structure of Lp-PLA2 in complex with a novel inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.805 Å
Deposited: 2017-09-15
Authors: Liu, Q.F., Xu, Y.C.
PDB entry 5yec: Crystal structure of Atg7CTD-Atg8-MgATP complex in form II
Classification: PROTEIN TRANSPORT/METAL BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.147 Å
Deposited: 2017-09-16
Authors: Yamaguchi, M., Satoo, K., Noda, N.N.
PDB entry 5yed: Crystal structure of LokiProfilin1
Classification: STRUCTURAL PROTEIN
Source organism: Lokiarchaeum sp. GC14_75
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-09-16
Authors: Robinson, R.C., Akil, C.
PDB entry 5yee: Crystal structure of LokiProfilin1/Rabbit Actin Complex
Classification: STRUCTURAL PROTEIN
Source organism: Lokiarchaeum sp. GC14_75; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2017-09-16
Authors: Robinson, R.C., Akil, C.
PDB entry 5yef: Crystal structure of CTCF ZFs2-8-Hs5-1aE
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.807 Å
Deposited: 2017-09-17
Authors: Yin, M., Wang, J., Wang, M., Li, X., Wang, Y.
PDB entry 5yeg: Crystal structure of CTCF ZFs4-8-Hs5-1a complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-09-17
Authors: Yin, M., Wang, J., Wang, M., Li, X.
PDB entry 5yeh: Crystal structure of CTCF ZFs4-8-eCBS
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.328 Å
Deposited: 2017-09-17
Authors: Yin, M., Wang, J., Wang, M., Li, X., Wang, Y.
PDB entry 5yei: Mechanistic insight into the regulation of Pseudomonas aeruginosa aspartate kinase
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2017-09-17
Authors: Li, C., Yang, M., Liu, L., Peng, C., Li, T., He, L., Song, Y., Zhu, Y., Bao, R.
PDB entry 5yej: Crystal structure of BioQ with its naturel double-stranded DNA operator
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mycobacterium smegmatis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.698 Å
Deposited: 2017-09-17
Authors: Yan, L., Guan, Z.Y., Zou, T.T.
PDB entry 5yek: Crystal structure of BioQ
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.191 Å
Deposited: 2017-09-17
Authors: Yan, L., Guan, Z.Y., Zou, T.T.
PDB entry 5yel: Crystal structure of CTCF ZFs6-11-gb7CSE
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2017-09-18
Authors: Yin, M., Wang, J., Wang, M., Li, X., Wang, Y.
PDB entry 5yem: CATPO mutant - T188F
Classification: OXIDOREDUCTASE
Source organism: Mycothermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2017-09-18
Authors: Yuzugullu Karakus, Y., Balci, S., Goc, G., Pearson, A.R., Yorke, B.
PDB entry 5yep: Crystal structure of SO_3166-SO_3165 from Shewanella oneidensis
Classification: ANTITOXIN/TOXIN
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-09-19
Authors: Jia, X., Gao, Z.Q., Zhang, H., Dong, Y.H.
PDB entry 5yeq: The structure of Sac-KARI protein
Classification: ISOMERASE
Source organism: Sulfolobus acidocaldarius
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2017-09-19
Authors: Ko, T.P., Chen, C.Y., Lin, K.F., Lin, B.L., Huang, C.H., Chiang, C.H., Horng, J.C., Tsai, M.D.
PDB entry 5yer: Regulatory domain of HypT from Salmonella typhimurium (Bromide ion-bound)
Classification: DNA BINDING PROTEIN
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2017-09-19
Authors: Jo, I., Hong, S., Ahn, J., Ha, N.C.
PDB entry 5yet: Structure of R354_WT
Classification: NUCLEAR PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.806 Å
Deposited: 2017-09-19
Authors: Dou, C., Yu, M.J., Gu, Y.J., Cheng, W.
PDB entry 5yeu: Structural and mechanistic analyses reveal a unique Cas4-like protein in the mimivirus virophage resistance element system
Classification: NUCLEAR PROTEIN
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.001 Å
Deposited: 2017-09-19
Authors: Dou, C., Yu, M.J., Gu, Y.J., Cheng, W.
PDB entry 5yev: Murine DR3 death domain
Classification: APOPTOSIS
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-09-19
Authors: Yin, X., Jin, T.
PDB entry 5yew: Structural basis for GTP hydrolysis and conformational change of mitofusin 1 in mediating mitochondrial fusion
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2017-09-20
Authors: Yan, L., Qi, Y., Huang, X., Yu, C.
PDB entry 5yey: The structure of a chair-type G-quadruplex of the human telomeric variant in K+ solution
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2017-09-20
Authors: Liu, C., Zhou, B., Kuryavyi, V.V., Zhu, G.
PDB entry 5yez: Regulatory domain of HypT M206Q mutant from Salmonella typhimurium
Classification: DNA BINDING PROTEIN
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-09-20
Authors: Jo, I., Hong, S., Ahn, J., Ha, N.C.
PDB entry 5yf0: Crystal structure of CARNMT1 bound to SAM
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2017-09-20
Authors: Cao, R., Zhang, X., Li, H.
PDB entry 5yf1: Crystal structure of CARNMT1 bound to carnosine and SFG
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.399 Å
Deposited: 2017-09-20
Authors: Cao, R., Li, H.
PDB entry 5yf2: Crystal structure of CARNMT1 bound to anserine and SAH
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.802 Å
Deposited: 2017-09-20
Authors: Cao, R., Li, H.
PDB entry 5yf4: A kinase complex MST4-MOB4
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.897 Å
Deposited: 2017-09-20
Authors: Chen, M., Zhou, Z.C.
PDB entry 5yf5: Crystals structure of Classical swine fever virus NS5B (residues 1-694)
Classification: TRANSFERASE
Source organism: Classical swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2017-09-20
Authors: Liu, W., Gong, P.
PDB entry 5yf6: Crystals structure of Classical swine fever virus NS5B (residues 1-682)
Classification: TRANSFERASE
Source organism: Classical swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-09-20
Authors: Liu, W., Gong, P.
PDB entry 5yf7: Crystals structure of Classical swine fever virus NS5B (residues 1-672)
Classification: TRANSFERASE
Source organism: Classical swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2017-09-20
Authors: Liu, W., Gong, P.
PDB entry 5yf8: Crystals structure of Classical swine fever virus NS5B (residues 1-672, Y471A-E472A mutant)
Classification: TRANSFERASE
Source organism: Classical swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.396 Å
Deposited: 2017-09-20
Authors: Liu, W., Gong, P.
PDB entry 5yf9: Crystal structure of CK2a2 form-2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2017-09-20
Authors: Tsuyuguchi, M., Kinoshita, T.
PDB entry 5yfb: Crystal structure of a new DPP III family member
Classification: HYDROLASE
Source organism: Armillaria tabescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-09-20
Authors: Xu, T., Sun, Z., Liu, J.
PDB entry 5yfc: Crystal structure of a new DPP III family member
Classification: HYDROLASE
Source organism: Armillaria tabescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2017-09-20
Authors: Xu, T., Liu, J.
PDB entry 5yfd: Crystal structure of a new DPP III family member
Classification: HYDROLASE
Source organism: Armillaria tabescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2017-09-20
Authors: Xu, T., Liu, J.
PDB entry 5yfe: Enzymatic and structural characterization of the poly (ethylene terephthalate) hydrolase PETase from I. sakaiensis
Classification: HYDROLASE
Source organism: Ideonella sakaiensis (strain 201-F6)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2017-09-21
Authors: Bao, R., He, L.H., Liu, B.
PDB entry 5yfg: SOLUTION STRUCTURE OF HUMAN MOG1
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-09-21
Authors: Hu, Q., Liu, Y., Bao, X., Liu, H.
PDB entry 5yfi: Crystal structure of the anti-human prostaglandin E receptor EP4 antibody Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.848 Å
Deposited: 2017-09-21
Authors: Toyoda, Y., Morimoto, K., Suno, R., Horita, S., Iwata, S., Kobayashi, T.
PDB entry 5yfj: Crystal structure of ribose-1,5-bisphosphate isomerase from Pyrococcus horikoshii OT3 in complex with ribulose-1,5-bisphosphate
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-09-21
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yfk: X-ray structure of a mutant form C232S of Clostridium perfringens sortase B
Classification: TRANSFERASE
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-09-21
Authors: Kamitori, S., Tamai, E.
PDB entry 5yfm: Human isocitrate dehydrogenase 1 bound with NADP
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-09-21
Authors: Nordlund, P., Chen, D., Jansson, A., Larsson, A.
PDB entry 5yfn: Human isocitrate dehydrogenase 1 bound with isocitrate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-09-21
Authors: Nordlund, P., Chen, D., Jansson, A., Larsson, A.
PDB entry 5yfp: Cryo-EM Structure of the Exocyst Complex
Classification: EXOCYTOSIS
Source organism: Saccharomyces cerevisia S288c; Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2017-09-21
Authors: Mei, K., Li, Y., Wang, S., Shao, G., Wang, J., Ding, Y., Luo, G., Yue, P., Liu, J.J., Wang, X., Dong, M.Q., Guo, W., Wang, H.W.
PDB entry 5yfs: Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yft: Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yfu: Crystal structure of ribose-1,5-bisphosphate isomerase from Pyrococcus horikoshii OT3 in complex with ribulose-1,5-bisphosphate and AMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yfv: Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate and AMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yfw: Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate and AMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yfx: Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate and AMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yfy: Plasmodium vivax SHMT bound with PLP-glycine and GS625
Classification: TRANSFERASE/INHIBITOR
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-09-22
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.
PDB entry 5yfz: Plasmodium vivax SHMT bound with PLP-glycine and S-GS626
Classification: TRANSFERASE/INHIBITOR
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2017-09-22
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.
PDB entry 5yg0: Plasmodium vivax SHMT bound with PLP-glycine and GS657
Classification: TRANSFERASE/INHIBITOR
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2017-09-22
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.
PDB entry 5yg1: Plasmodium vivax SHMT bound with PLP-glycine and GS704
Classification: TRANSFERASE/INHIBITOR
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2017-09-22
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.
PDB entry 5yg2: Plasmodium vivax SHMT bound with PLP-glycine and GS705
Classification: TRANSFERASE/INHIBITOR
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-09-22
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.
PDB entry 5yg3: Plasmodium vivax SHMT bound with PLP-glycine and S-GS834
Classification: TRANSFERASE/INHIBITOR
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-09-22
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.
PDB entry 5yg4: Plasmodium vivax SHMT bound with PLP-glycine and S-GS849
Classification: TRANSFERASE/INHIBITOR
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-09-22
Authors: Chitnumsub, P., Jaruwat, A., Leartsakulpanich, U., Schwertz, G., Diederich, F.
PDB entry 5yg5: Crystal structure of ribose-1,5-bisphosphate isomerase from Pyrococcus horikoshii OT3 in complex with ribulose-1,5-bisphosphate and GMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yg6: Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate and GMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yg7: Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate and GMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yg8: Crystal structure of ribose-1,5-bisphosphate isomerase from Pyrococcus horikoshii OT3 in complex with ribulose-1,5-bisphosphate, AMP and GMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yg9: Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate, AMP and GMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5yga: Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate, AMP and GMP
Classification: ISOMERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2017-09-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5ygb: Crystal structure of drosophila melanogaster Papi extended Tudor domain mutant - D287A
Classification: PROTEIN BINDING
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2017-09-22
Authors: Zhang, Y.H., Huang, Y.
PDB entry 5ygc: Crystal structure of Drosophila melanogaster Papi extended Tudor domain
Classification: PROTEIN BINDING
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-09-22
Authors: Zhang, Y.H., Huang, Y.
PDB entry 5ygd: Crystal structure of Drosophila melanogaster Papi extended Tudor domain (D287A) in complex with Piwi N-terminal R10me2s peptide
Classification: PROTEIN BINDING
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.551 Å
Deposited: 2017-09-22
Authors: Zhang, Y.H., Huang, Y.
PDB entry 5yge: ArgA complexed with AceCoA and glutamate
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.039 Å
Deposited: 2017-09-22
Authors: Yang, X., Wu, L., Ran, Y., Xu, A., Zhang, B., Yang, X., Zhang, R., Rao, Z., Li, J.
PDB entry 5ygf: Crystal structure of Drosophila melanogaster Papi extended Tudor domain (D287A) in complex with Piwi N-terminal R10-unme peptide
Classification: PROTEIN BINDING
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.698 Å
Deposited: 2017-09-22
Authors: Zhang, Y.H., Huang, Y.
PDB entry 5ygg: Crystal structure of Fructokinase Double-Mutant (T261C-H108C) from Vibrio cholerae O395 in fructose, ADP and potassium ion bound form
Classification: TRANSFERASE
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.671 Å
Deposited: 2017-09-22
Authors: Chatterjee, S., Paul, R., Nath, S., Sen, U.
PDB entry 5ygh: Crystal Structure of the Capsid Protein from Zika Virus
Classification: VIRAL PROTEIN
Source organism: Zika virus (strain Mr 766)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.884 Å
Deposited: 2017-09-23
Authors: Shang, Z., Song, H., Shi, Y., Qi, J., Gao, G.F.
PDB entry 5ygi: Crystal structure of human FPPS in complex with an inhibitor THZ93
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.177 Å
Deposited: 2017-09-23
Authors: Li, X.
PDB entry 5ygj: Crystal structure of a synthase from Streptomyces sp. CL190
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. (strain CL190)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.648 Å
Deposited: 2017-09-23
Authors: Gao, J., Liu, W.D., Chen, C.C., Guo, R.T.
PDB entry 5ygk: Crystal structure of a synthase from Streptomyces sp. CL190 with dmaspp
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. (strain CL190)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.047 Å
Deposited: 2017-09-23
Authors: Gao, J., Liu, W.D., Chen, C.C., Guo, R.T.
PDB entry 5ygm: Monomeric structure of concanavalin A at pH 7.5 from Carnivalia ensiformis
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2017-09-24
Authors: Park, J.H., Park, Y.R., Lee, S.J.
PDB entry 5ygp: Human TNFRSF25 death domain mutant-D412E
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2017-09-25
Authors: Yin, X., Jin, T.C.
PDB entry 5ygq: Crystal Structure of Ferredoxin NADP+ Oxidoreductase from Rhodopseudomonas palustris
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-09-25
Authors: Muraki, N., Seo, D., Kurisu, G.
PDB entry 5ygr: Crystal structure of PLP bound Diaminopropionate ammonia lyase from Salmonella typhimurium
Classification: LYASE
Source organism: Salmonella enterica subsp. enterica serovar Typhi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-09-25
Authors: Geeta, D., Shveta, B., Shavithri, H.S., Murthy, M.R.N.
PDB entry 5ygs: Human TNFRSF25 death domain
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.691 Å
Deposited: 2017-09-26
Authors: Yin, X., Jin, T.
PDB entry 5ygu: Crystal structure of Escherichia coli (strain K12) mRNA Decapping Complex RppH-DapF
Classification: ISOMERASE/HYDROLASE
Source organism: Escherichia coli; Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.298 Å
Deposited: 2017-09-27
Authors: Wang, Q., Guan, Z.Y., Zhang, D.L., Zou, T.T., Yin, P.
PDB entry 5ygv: Crystal structure of the abscisic acid receptor PYR1 in complex with an antagonist
Classification: HORMONE RECEPTOR
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-09-27
Authors: Akiyama, T., Sue, M., Takeuchi, J., Mimura, N., Okamoto, M., Monda, K., Iba, K., Ohnishi, T., Todoroki, Y., Yajima, S.
PDB entry 5ygx: Structure of BACE1 in complex with N-(3-((4R,5R,6S)-2-amino-6-(1,1-difluoroethyl)-5-fluoro-4-methyl-5,6-dihydro-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-09-27
Authors: Nakahara, K., Fuchino, K., Komano, K., Asada, N., Tadano, G., Hasegawa, T., Yamamoto, T., Sako, Y., Ogawa, M., Unemura, C., Hosono, M., Sakaguchi, G., Ando, S., Ohnishi, S., Kido, Y., Fukushima, T., Dhuyvetter, D., Borghys, H., Gijsen, H., Yamano, Y., Iso, Y., Kusakabe, K.
PDB entry 5ygy: Crystal Structure of BACE1 in complex with (S)-N-(3-(2-amino-6-(fluoromethyl)-4 -methyl-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-cyanopicolinamide
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-09-27
Authors: Fuchino, K., Mitsuoka, Y., Masui, M., Kurose, N., Yoshida, S., Komano, K., Yamamoto, T., Ogawa, M., Unemura, C., Hosono, M., Ito, H., Sakaguchi, G., Ando, S., Ohnishi, S., Kido, Y., Fukushima, T., Miyajima, H., Hiroyama, S., Koyabu, K., Dhuyvetter, D., Borghys, H., Gijsen, H., Yamano, Y., Iso, Y., Kusakabe, K.
PDB entry 5yh0: The structure of DrFam20C1
Classification: TRANSFERASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2017-09-27
Authors: Zhang, H., Xiao, J.
PDB entry 5yh1: Member of s1p family of ribosomal proteins PF0399 DHH domain
Classification: RIBOSOMAL PROTEIN
Source organism: Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2017-09-27
Authors: Song, Y., Liu, X.P.
PDB entry 5yh2: The structure of DrFam20C1 and hFam20A complex
Classification: TRANSFERASE
Source organism: Danio rerio; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2017-09-27
Authors: Zhang, H., Xiao, J.
PDB entry 5yh3: The structure of hFam20C and hFam20A complex
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2017-09-27
Authors: Zhu, Q., Xiao, J.
PDB entry 5yh4: Miraculin-like protein from Vitis vinifera
Classification: HYDROLASE INHIBITOR
Source organism: Vitis vinifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2017-09-27
Authors: Shimizu-Ibuka, A., Furukawa, N.
PDB entry 5yh5: The crystal structure of Staphylococcus aureus CntA in apo form
Classification: METAL BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-09-27
Authors: Song, L., Ji, Q.
PDB entry 5yh7: Crystal structure of the complex of Phosphopantetheine adenylyltransferase from Acinetobacter baumannii with Coenzyme A at 2.0 A resolution
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii (strain ACICU)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2017-09-27
Authors: Singh, P.K., Gupta, A., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5yh8: The crystal structure of Staphylococcus aureus CntA in complex with staphylopine and nickel
Classification: METAL BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2017-09-27
Authors: Ji, Q., Song, L.
PDB entry 5yha: Crystal structure of Pd(allyl)/Wild Type Polyhedra
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2017-09-27
Authors: Abe, S., Atsumi, K., Yamashita, K., Hirata, K., Mori, H., Ueno, T.
PDB entry 5yhb: Crystal structure of Pd(allyl)/polyhedra mutant with deletion of Gly192-Ala194
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cytoplasmic polyhedrosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2017-09-27
Authors: Abe, S., Atsumi, K., Yamashita, K., Hirata, K., Mori, H., Ueno, T.
PDB entry 5yhe: The crystal structure of Staphylococcus aureus CntA in complex with staphylopine and cobalt
Classification: METAL BINDING PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.465 Å
Deposited: 2017-09-28
Authors: Song, L., Ji, Q.
PDB entry 5yhf: Crystal structure of SecDF in Super-membrane-facing form
Classification: MEMBRANE PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-09-28
Authors: Tanaka, Y., Tsukazaki, T., Yoshikaie, K., Furukawa, A.
PDB entry 5yhg: The crystal structure of Staphylococcus aureus CntA in complex with staphylopine and zinc
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2017-09-28
Authors: Ji, Q., Song, L.
PDB entry 5yhh: Crystal structure of YiiM from Geobacillus stearothermophilus
Classification: OXIDOREDUCTASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-09-28
Authors: Namgung, B., Kim, J.H., Song, W.S., Yoon, S.I.
PDB entry 5yhi: Crystal structure of YiiM from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2017-09-28
Authors: Namgung, B., Kim, J.H., Song, W.S., Yoon, S.I.
PDB entry 5yhj: Cytochrome P450EX alpha (CYP152N1) wild-type with myristic acid
Classification: OXIDOREDUCTASE
Source organism: Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-09-28
Authors: Onoda, H., Shoji, O., Suzuki, K., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 5yhl: Crystal structure of the human prostaglandin E receptor EP4 in complex with Fab and an antagonist Br-derivative
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.2 Å
Deposited: 2017-09-28
Authors: Toyoda, Y., Morimoto, K., Suno, R., Horita, S., Iwata, S., Kobayashi, T.
PDB entry 5yhm: Crystal structure of dehydroquinate dehydratase with tris induced oligomerisation at 1.907 Angstrom resolution
Classification: LYASE
Source organism: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2017-09-28
Authors: Iqbal, N., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5yhn: Solution structure of the LEKTI Domain 4
Classification: HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-09-29
Authors: Mok, Y.K., Ramesh, K.
PDB entry 5yho: Crystal structure of acetolactate decarboxylase from Enterobacter cloacae
Classification: METAL BINDING PROTEIN
Source organism: Klebsiella aerogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2017-09-29
Authors: Ji, F.L., Li, M.Y., Feng, Y.B.
PDB entry 5yhp: Proline iminopeptidase from Psychrophilic yeast glaciozyma antarctica
Classification: HYDROLASE
Source organism: Glaciozyma antarctica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.393 Å
Deposited: 2017-09-29
Authors: Rodzli, N.A., Kamaruddin, S., Jonet, A., Seman, W.M.K.W., Tab, M.M., Minor, N., Jaafar, N.R., Mahadi, N.M., Murad, A.M.A., Bakar, F.D.A., Illias, R.M.D.
PDB entry 5yhq: Cryo-EM Structure of CVA6 VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Coxsackievirus A6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2017-09-29
Authors: Chen, J., Zhang, C., Huang, Z., Cong, Y.
PDB entry 5yhr: Crystal structure of the anti-CRISPR protein, AcrF2
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage D3112
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2017-09-29
Authors: Hong, S., Ka, D., Bae, E.
PDB entry 5yhs: Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, apo form
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-09-29
Authors: Tanuma, M., Yamada, C., Arakawa, T., Higuchi, Y., Takegawa, K., Fushinobu, S.
PDB entry 5yht: Crystal structure of a phosphatase from Mycobacterium tuberculosis in complex with its substrate
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2017-09-29
Authors: Biswal, B.K., Jha, B.
PDB entry 5yhu: Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-09-30
Authors: Chen, B., Zhu, Y., Ye, S., Zhang, R.
PDB entry 5yhv: Crystal structure of an aminotransferase from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-09-30
Authors: Saroj, D.C., Biswal, B.K.
PDB entry 5yhw: Crystal structure of Pig SAMHD1
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-09-30
Authors: Qin, X.H., Kong, J.
PDB entry 5yhx: Structure of Lactococcus lactis ZitR, wild type
Classification: METAL BINDING PROTEIN
Source organism: Lactococcus lactis subsp. lactis (strain IL1403)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-10-01
Authors: Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.
PDB entry 5yhy: Structure of Lactococcus lactis ZitR, C30S mutant
Classification: METAL BINDING PROTEIN
Source organism: Lactococcus lactis subsp. lactis (strain IL1403)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2017-10-01
Authors: Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.
PDB entry 5yhz: Structure of Lactococcus lactis ZitR, E41A mutant
Classification: METAL BINDING PROTEIN
Source organism: Lactococcus lactis subsp. lactis (strain IL1403)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-10-01
Authors: Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.
PDB entry 5yi0: Structure of Lactococcus lactis ZitR, C30AH42A mutant
Classification: METAL BINDING PROTEIN
Source organism: Lactococcus lactis subsp. lactis (strain IL1403)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-10-01
Authors: Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.
PDB entry 5yi1: Structure of Lactococcus lactis ZitR, C30AH42A mutant in apo form
Classification: METAL BINDING PROTEIN
Source organism: Lactococcus lactis subsp. lactis (strain IL1403)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-10-01
Authors: Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.
PDB entry 5yi2: Structure of Lactococcus lactis ZitR, wild type in complex with DNA
Classification: METAL BINDING PROTEIN
Source organism: Lactococcus lactis subsp. lactis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-10-01
Authors: Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.
PDB entry 5yi3: Structure of Lactococcus lactis ZitR, C30S mutant in complex with DNA
Classification: METAL BINDING PROTEIN/DNA
Source organism: Lactococcus lactis subsp. lactis (strain IL1403); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-10-01
Authors: Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.
PDB entry 5yi4: Solution Structure of the DISC1/Ndel1 complex
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2017-10-02
Authors: Ye, F., Yu, C., Yu, C., Zhang, M.
PDB entry 5yi5: human ferritin mutant - E-helix deletion
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2017-10-02
Authors: Lee, S.G., Yoon, H.R., Ahn, B.J., Jeong, H., Hyun, J., Jung, Y., Kim, H.
PDB entry 5yi6: CRISPR associated protein Cas6
Classification: HYDROLASE
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 1.852 Å
Deposited: 2017-10-03
Authors: Ko, T.P., Hsieh, T.J., Chen, Y.
PDB entry 5yi7: Crystal structure of drosophila Numb PTB domain and Pon peptide complex
Classification: CELL CYCLE
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-10-03
Authors: Shan, Z., Wen, W.
PDB entry 5yi8: Crystal structure of drosophila Numb PTB domain and Pon peptide complex
Classification: CELL CYCLE
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2017-10-03
Authors: Shan, Z., Wen, W.
PDB entry 5yi9: Solution structure of the LEDGF/p75 IBD - JPO2 (aa 56-91) complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-10-03
Authors: Veverka, V.
PDB entry 5yia: Crystal Structure of KNI-10343 bound Plasmepsin II (PMII) from Plasmodium falciparum
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-10-03
Authors: Rathore, I., Mishra, V., Bhaumik, P.
PDB entry 5yib: Crystal Structure of KNI-10743 bound Plasmepsin II (PMII) from Plasmodium falciparum
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2017-10-03
Authors: Rathore, I., Mishra, V., Bhaumik, P.
PDB entry 5yic: Crystal Structure of KNI-10333 bound Plasmepsin II (PMII) from Plasmodium falciparum
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-10-03
Authors: Mishra, V., Rathore, I., Bhaumik, P.
PDB entry 5yid: Crystal Structure of KNI-10395 bound Plasmepsin II (PMII) from Plasmodium falciparum
Classification: HYDROLASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-10-04
Authors: Mishra, V., Rathore, I., Bhaumik, P.
PDB entry 5yie: Crystal Structure of KNI-10742 bound Plasmepsin II (PMII) from Plasmodium falciparum
Classification: HYDROLASE
Source organism: Plasmodium falciparum (isolate 3D7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-10-04
Authors: Mishra, V., Rathore, I., Bhaumik, P.
PDB entry 5yif: Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, E163A mutant pyruvylated beta-D-galactose complex
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2017-10-04
Authors: Tanuma, M., Yamada, C., Arakawa, T., Higuchi, Y., Takegawa, K., Fushinobu, S.
PDB entry 5yig: Crystal structure of Streptococcus pneumonia ParE with inhibitor
Classification: ANTIMICROBIAL PROTEIN
Source organism: Streptococcus pneumoniae GA47502
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-10-04
Authors: Cherian, J., Tan, Y., Hill, J.
PDB entry 5yih: Crystal structure of tetrameric Nucleoside diphosphate kinase at 1.98 A resolution from Acinetobacter baumannii
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2017-10-04
Authors: Bairagya, H.R., Sikarwar, J., Iqbal, N., Singh, P.K., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5yii: Crystal Structure of 45 amino acid deleted from N-terminal of Phosphoserine Aminotransferase (PSAT) of Entamoeba histolytica
Classification: TRANSFERASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-10-04
Authors: Singh, R.K., Gourinath, S.
PDB entry 5yij: Structure of a Legionella effector with substrates
Classification: TRANSFERASE/PROTEIN BINDING
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2017-10-05
Authors: Feng, Y., Mu, Y., Wang, H.
PDB entry 5yik: Structure of a Legionella effector with its substrate
Classification: TRANSFERASE/PROTEIN BINDING
Source organism: Homo sapiens; Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 3.102 Å
Deposited: 2017-10-05
Authors: Feng, Y., Dong, Y., Liu, Z.
PDB entry 5yil: Hoisting-loop in bacterial multidrug exporter AcrB is a highly flexible hinge that enables the large motion of the subdomains
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-10-05
Authors: Zwama, M., Sakurai, K., Hayashi, K., Nakashima, R., Kitagawa, K., Nishino, K., Yamaguchi, A.
PDB entry 5yim: Structure of a Legionella effector
Classification: TRANSFERASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 3.394 Å
Deposited: 2017-10-05
Authors: Feng, Y., Dong, Y., Wang, W.
PDB entry 5yin: Hen egg-white lysozyme precipitant-free orthorhombic form
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2017-10-06
Authors: Suzuki, Y., Tsuge, H., Uehara, Y.
PDB entry 5yio: NMR solution structure of subunit epsilon of the Mycobacterium tuberculosis F-ATP synthase
Classification: PROTON TRANSPORT
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: SOLUTION NMR
Deposited: 2017-10-06
Authors: Shin, J., Ragunathan, P., Sundararaman, L., Nartey, W., Manimekalai, M.S.S., Bogdanovic, N., Gruber, G.
PDB entry 5yip: Crystal Structure of AnkG LIR/GABARAPL1 complex
Classification: SIGNALING PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-10-06
Authors: Li, J., Zhu, R., Chen, K., Zheng, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.
PDB entry 5yiq: Crystal structure of AnkG LIR/LC3B complex
Classification: PROTEIN BINDING
Source organism: Mus musculus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2017-10-06
Authors: Li, J., Zhu, R., Chen, K., Zheng, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.
PDB entry 5yir: Crystal Structure of AnkB LIR/GABARAP complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2017-10-06
Authors: Li, J., Zhu, R., Chen, K., Zheng, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.
PDB entry 5yis: Crystal Structure of AnkB LIR/LC3B complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2017-10-06
Authors: Li, J., Zhu, R., Chen, K., Zheng, H., Yuan, C., Zhang, H., Wang, C., Zhang, M.
PDB entry 5yit: Crystal Structure of Hypothetical protein (Rv3272) from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2017-10-06
Authors: Karade, S.S., Pratap, J.V.
PDB entry 5yiu: Caulobacter crescentus GcrA DNA-binding domain (DBD)
Classification: DNA BINDING PROTEIN
Source organism: Caulobacter crescentus (strain NA1000 / CB15N)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2017-10-06
Authors: Wu, X., Zhang, Y.
PDB entry 5yiv: Caulobacter crescentus GcrA DNA-binding domain(DBD) in complex with methylated dsDNA(crystal form 1)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Caulobacter crescentus (strain NA1000 / CB15N); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.914 Å
Deposited: 2017-10-06
Authors: Wu, X., Zhang, Y.
PDB entry 5yiw: Caulobacter crescentus GcrA DNA-binding domain (DBD) in complex with methylated dsDNA (crystal form 2)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Caulobacter crescentus (strain NA1000 / CB15N); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.551 Å
Deposited: 2017-10-06
Authors: Wu, X., Zhang, Y.
PDB entry 5yix: Caulobacter crescentus GcrA sigma-interacting domain (SID) in complex with domain 2 of sigma 70
Classification: DNA BINDING PROTEIN
Source organism: Caulobacter crescentus; Caulobacter crescentus (strain NA1000 / CB15N)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.302 Å
Deposited: 2017-10-06
Authors: Wu, X., Zhang, Y.
PDB entry 5yiy: Crystal structure of D175A mutant of Rv3272 from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.504 Å
Deposited: 2017-10-06
Authors: Karade, S.S., Pratap, J.V.
PDB entry 5yiz: Mouse Cereblon thalidomide binding domain complexed with racemic thalidomide
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-10-06
Authors: Mori, T., Hakoshima, T.
PDB entry 5yj0: Mouse Cereblon thalidomide binding domain complexed with S-form thalidomide
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-10-06
Authors: Mori, T., Hakoshima, T.
PDB entry 5yj1: Mouse Cereblon thalidomide binding domain complexed with R-form thalidomide
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-10-06
Authors: Mori, T., Hakoshima, T.