LiteFold/PDB huggingface dataset:
PDB entry 4yau: Reduced CYPOR mutant - G141del/E142N
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-02-17
Authors: Xia, C., Kim, J.J.P.
PDB entry 4yav: Crystal structure of LigG in complex with B-glutathionyl-acetoveratrone (GS-AV) from Sphingobium sp. strain SYK-6
Classification: TRANSFERASE
Source organism: Sphingobium sp. SYK-6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.401 Å
Deposited: 2015-02-17
Authors: Pereira, J.H., McAndrew, R.P., Heins, R.A., Sale, K.L., Simmons, B.A., Adams, P.D.
PDB entry 4yaw: Reduced CYPOR mutant - G141del
Classification: OXIDOREDUCTASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-02-17
Authors: Xia, C., Kim, J.J.P.
PDB entry 4yax: Crystal structure of TRIM24 PHD-bromodomain complexed with N-[6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl]benzenesulfonamide (5g)
Classification: TRANSCRIPTION/TRANSCRIPTION INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-02-18
Authors: Poncet-Montange, G., Palmer, W., Jones, P.
PDB entry 4yay: XFEL structure of human Angiotensin Receptor
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-02-18
Authors: Zhang, H., Unal, H., Gati, C., Han, G.W., Zatsepin, N.A., James, D., Wang, D., Nelson, G., Weierstall, U., Messerschmidt, M., Williams, G.J., Boutet, S., Yefanov, O.M., White, T.A., Liu, W., Ishchenko, A., Tirupula, K.C., Desnoyer, R., Sawaya, M.C., Xu, Q., Coe, J., Cornrad, C.E., Fromme, P., Stevens, R.C., Katritch, V., Karnik, S.S., Cherezov, V., GPCR Network (GPCR)
PDB entry 4yaz: 3',3'-cGAMP riboswitch bound with 3',3'-cGAMP
Classification: RNA
Source organism: Geobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-02-18
Authors: Ren, A.M., Patel, D.J., Rajashankar, R.K.
PDB entry 4yb0: 3',3'-cGAMP riboswitch bound with c-di-GMP
Classification: RNA
Source organism: Geobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 2.121 Å
Deposited: 2015-02-18
Authors: Ren, A.M., Patel, D.J., Rajashankar, R.K.
PDB entry 4yb1: 20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP
Classification: RNA/RNA BINDING PROTEIN
Source organism: Homo sapiens; Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.081 Å
Deposited: 2015-02-18
Authors: Ren, A.M., Patel, D.J., Rajashankar, R.K.
PDB entry 4yb4: Crystal structure of homoisocitrate dehydrogenase from Thermus thermophilus in complex with homoisocitrate, magnesium ion (II) and NADH
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus HB27
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-02-18
Authors: Takahashi, K., Tomita, T., Kuzuyama, T., Nishiyama, M.
PDB entry 4yb5: Adenosine triphosphate phosphoribosyltransferase from Campylobacter jejuni in complex with the allosteric inhibitor histidine
Classification: TRANSFERASE
Source organism: Campylobacter jejuni (strain RM1221)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2015-02-18
Authors: Mittelstaedt, G., Moggre, G.-J., Parker, E.J.
PDB entry 4yb6: Adenosine triphosphate phosphoribosyltransferase from Campylobacter jejuni in complex with the inhibitors AMP and histidine
Classification: TRANSFERASE
Source organism: Campylobacter jejuni (strain RM1221)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2015-02-18
Authors: Mittelstaedt, G., Moggre, G.-J., Parker, E.J.
PDB entry 4yb7: Adenosine triphosphate phosphoribosyltransferase from Campylobacter jejuni in complex with ATP
Classification: TRANSFERASE
Source organism: Campylobacter jejuni (strain RM1221)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-02-18
Authors: Mittelstaedt, G., Moggre, G.-J., Parker, E.J.
PDB entry 4yb8: Ca. Korarchaeum cryptofilum dinucleotide forming Acetyl-coenzyme A synthetase 1 in complex with phosphate and ADP
Classification: LIGASE
Source organism: Korarchaeum cryptofilum (strain OPF8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-02-18
Authors: Weisse, R.H.-J., Scheidig, A.J.
PDB entry 4yb9: Crystal structure of the Bovine Fructose transporter GLUT5 in an open inward-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-02-18
Authors: Verdon, G., Kang, H.J., Iwata, S., Drew, D.
PDB entry 4yba: The structure of the C.Kpn2I controller protein
Classification: GENE REGULATION
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-02-18
Authors: Shevtsov, M.B., Martin, R.N., Swiderska, A., McGeehan, G.E., Kneale, G.G.
PDB entry 4ybb: High-resolution structure of the Escherichia coli ribosome
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-02-18
Authors: Noeske, J., Wasserman, M.R., Terry, D.S., Altman, R.B., Blanchard, S.C., Cate, J.H.D.
PDB entry 4ybf: Aspartic Proteinase Sapp2 Secreted from Candida Parapsilosis at 1.25 A Resolution
Classification: HYDROLASE
Source organism: Candida parapsilosis (strain CDC 317 / ATCC MYA-4646)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2015-02-18
Authors: Dostal, J., Hruskova-Heidingsfeldova, O., Rezacova, P., Brynda, J., Mareckova, L., Pichova, I.
PDB entry 4ybg: Crystal structure of the MAEL domain of Drosophila melanogaster Maelstrom
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.602 Å
Deposited: 2015-02-18
Authors: Matsumoto, N., Ishitani, R., Nishimasu, H., Nureki, O.
PDB entry 4ybh: Crystal structure of the human RAGE ectodomain (VC1C2 fragment) in complex with human S100A6
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-02-18
Authors: Yatime, L., Andersen, G.R.
PDB entry 4ybi: Crystal structure of BACE with amino thiazine inhibitor LY2811376
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2015-02-18
Authors: Timm, D.E.
PDB entry 4ybj: Type II Dasatinib Analog Crystallized with c-Src Kinase
Classification: TRANSFERASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2015-02-18
Authors: Kwarcinski, F.E., Brandvold, K.B., Johnson, T.K., Phadke, S., Meagher, J.L., Seeliger, M.A., Stuckey, J.A., Soellner, M.B.
PDB entry 4ybk: C-Helix-Out Dasatinib Analog Crystallized with c-Src Kinase
Classification: TRANSFERASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-02-18
Authors: Kwarcinski, F.E., Brandvold, K.B., Johnson, T.K., Phadke, S., Meagher, J.L., Seeliger, M.A., Stuckey, J.A., Soellner, M.B.
PDB entry 4ybl: Crystal structure of the stabilized inner domain of clade A/E HIV-1 gp120 in complex with the ADCC mediating ANTI-HIV-1 antibody A32
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2015-02-18
Authors: Tolbert, W.D., Gohain, N., Pazgier, M.
PDB entry 4ybm: Crystal structure of TRIM24 PHD-bromodomain complexed with N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide (7b)
Classification: TRANSCRIPTION/TRANSCRIPTION INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2015-02-18
Authors: Poncet-Montange, G., Palmer, W., Jones, P.
PDB entry 4ybn: Structure of the FAD and Heme binding protein msmeg_4975 from Mycobacterium smegmatis
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-02-18
Authors: Ahmed, F.H., Carr, P.D., Jackson, C.J.
PDB entry 4ybo: Structure of Citrate Synthase from the Thermoacidophilic Euryarchaeon Thermolasma acidophilum
Classification: TRANSFERASE
Source organism: Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.179 Å
Deposited: 2015-02-19
Authors: Murphy, J.R., Donini, S., Kappock, T.J.
PDB entry 4ybp: Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal after 24 hour incubation at 1.83 angstrom resolution - thermodynamic product - 1st cycle
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.831 Å
Deposited: 2015-02-19
Authors: Nosrati, M., Geiger, J.H.
PDB entry 4ybq: Rat GLUT5 with Fv in the outward-open form
Classification: TRANSPORT PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.27 Å
Deposited: 2015-02-19
Authors: Nomura, N., Shimamura, T., Iwata, S.
PDB entry 4ybr: Structure of Mycobacterium tuberculosis NadD in complex with NADP, P21212
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2015-02-19
Authors: Korotkov, K.V.
PDB entry 4ybs: Crystal structure of TRIM24 PHD-bromodomain complexed with N-{1,3-dimethyl-6-[3-(2-methylpropoxy)phenoxy]-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-1,2-dimethyl-1H-imidazole-4-sulfonamide (7g)
Classification: TRANSCRIPTION/TRANSCRIPTION INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2015-02-19
Authors: Poncet-Montange, G., Palmer, W., Jones, P.
PDB entry 4ybt: Crystal structure of TRIM24 PHD-bromodomain complexed with N-{1,3-dimethyl-2-oxo-6-[3-(oxolan-3-ylmethoxy)phenoxy]-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-1-methyl-1H-imidazole-4-sulfonamide (7l)
Classification: TRANSCRIPTION/TRANSCRIPTION INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2015-02-19
Authors: Poncet-Montange, G., Palmer, W., Jones, P.
PDB entry 4ybu: Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding ProteinII in complex with Retinal after 24 h incubation and 1 hour UV irradiation at 1.92 angstrom - 1st cycle
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.924 Å
Deposited: 2015-02-19
Authors: Nosrati, M., Geiger, J.H.
PDB entry 4ybv: Crystal Structure of mutant of (Q32A) thioesterase enzyme SAV0944 from Staphylococcus aureus subsp. aureus Mu50
Classification: HYDROLASE
Source organism: Staphylococcus aureus (strain Mu50 / ATCC 700699)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-02-19
Authors: Khandokar, Y.B., Srivastava, P., Forwood, J.
PDB entry 4ybz: Ca. Korarchaeum cryptofilum dinucleotide forming Acetyl-coenzyme A synthetase 1 in complex with ADP and with phosphorylated phosphohistidine segment (site I orientation)
Classification: LIGASE
Source organism: Korarchaeum cryptofilum (strain OPF8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-02-19
Authors: Weisse, R.H.-J., Scheidig, A.J.
PDB entry 4yc0: Crystal structure of ADP-ribosyltransferase Vis in complex with M6 Inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Vibrio splendidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-02-19
Authors: Ravulapalli, R., Merrill, A.R.
PDB entry 4yc1: Structure of the human TSG101-UEV domain in the P321 space group
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-02-19
Authors: Camara-Artigas, A.
PDB entry 4yc2: Crystal structure of the stabilized inner domain of clade A/E HIV-1 gp120 from E. coli in complex with the antibody A32.
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2015-02-19
Authors: Tolbert, W.D., Gohain, N., Pazgier, M.
PDB entry 4yc3: CDK1/CyclinB1/CKS2 Apo
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-02-19
Authors: Brown, N.R., Korolchuk, S., Martin, M.P., Stanley, W., Moukhametzianov, R., Noble, M.E.M., Endicott, J.A.
PDB entry 4yc4: Crystal structure of phosphatidyl inositol 4-kinase II alpha in complex with nucleotide analog
Classification: TRANSFERASE
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2015-02-19
Authors: Klima, M., Boura, E.
PDB entry 4yc5: Beta1 synthetic solenoid protein
Classification: STRUCTURAL PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.755 Å
Deposited: 2015-02-19
Authors: Murray, J.W.
PDB entry 4yc6: CDK1/CKS1
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-02-19
Authors: Brown, N.R., Korolchuk, S., Martin, M.P., Stanley, W., Moukhametzianov, R., Noble, M.E.M., Endicott, J.A.
PDB entry 4yc7: Crystal structure of human FMNL2 GBD-FH3 Domains bound to Cdc42-GppNHp
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-02-19
Authors: Kuhn, S., Geyer, M.
PDB entry 4yc8: C-Helix-Out Binding of Dasatinib Analog to c-Abl Kinase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-02-19
Authors: Kwarcinski, F.E., Brandvold, K.B., Johnson, T.J., Phadke, S., Meagher, J.L., Seeliger, M.A., Stuckey, J.A., Soellner, M.B.
PDB entry 4yc9: Crystal structure of TRIM24 PHD-bromodomain complexed with N-(6-{3-[4-(dimethylamino)butoxy]-5-propoxyphenoxy}-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl)-3,4-dimethoxybenzene-1-sulfonamide (8i)
Classification: TRANSCRIPTION/TRANSCRIPTION INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2015-02-19
Authors: Poncet-Montange, G., Palmer, W., Jones, P.
PDB entry 4yca: Evidence of Kinetic Cooperativity in dimeric Ketopantoate Reductase from Staphylococcus aureus
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2015-02-19
Authors: Sanchez, J.E., Gross, P.G., Goetze, R., Walsh Jr., R.M., Peeples, W.B., Wood, Z.A.
PDB entry 4ycb: Structure of a single tryptophan mutant of Acetobacter aceti PurE
Classification: ISOMERASE
Source organism: Acetobacter aceti 1023
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2015-02-19
Authors: Kappock, T.J., Sullivan, K.L., Mullins, E.A.
PDB entry 4ycc: Structure of a single tryptophan mutant of Acetobacter aceti PurE with Y154L mutation
Classification: ISOMERASE
Source organism: Acetobacter aceti 1023
Experimental method: X-RAY DIFFRACTION
Resolution: 2.257 Å
Deposited: 2015-02-19
Authors: Kappock, T.J., Sullivan, K.L.
PDB entry 4ycd: Structure of a single tryptophan mutant of Acetobacter aceti PurE with Y154F
Classification: ISOMERASE
Source organism: Acetobacter aceti 1023
Experimental method: X-RAY DIFFRACTION
Resolution: 1.643 Å
Deposited: 2015-02-19
Authors: Kappock, T.J., Sullivan, K.L.
PDB entry 4yce: Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal at 1.95 angstrom- visible light irradiated crystal for 1 hour - 2nd cycle
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.953 Å
Deposited: 2015-02-19
Authors: Nosrati, M., Geiger, J.H.
PDB entry 4ycg: Pro-bone morphogenetic protein 9
Classification: CYTOKINE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2015-02-20
Authors: Mi, L.-Z., Brown, C.T., Gao, Y., Tian, Y., Le, V., Walz, T., Springer, T.A.
PDB entry 4ych: Crystal Structure of R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding ProteinII with Retinal at 1.96 Angstrom - UV irradiated Crystal for 1 hour - 2nd cycle
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2015-02-20
Authors: Nosrati, M., Geiger, J.H.
PDB entry 4yci: non-latent pro-bone morphogenetic protein 9
Classification: CYTOKINE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2015-02-20
Authors: Mi, L.Z., Brown, C.T., Gao, Y., Tian, Y., Le, V., Walz, T., Springer, T.A.
PDB entry 4ycj: Structure of Acetobacter aceti PurE Y154F
Classification: ISOMERASE
Source organism: Acetobacter aceti 1023
Experimental method: X-RAY DIFFRACTION
Resolution: 1.845 Å
Deposited: 2015-02-20
Authors: Kappock, T.J., Sullivan, K.L.
PDB entry 4yck: Endothiapepsin in complex with fragment 211
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.07 Å
Deposited: 2015-02-20
Authors: Stieler, M., Heine, A., Klebe, G.
PDB entry 4ycl: Crystal structure of the SR CA2+-ATPASE with bound CPA
Classification: HYDROLASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2015-02-20
Authors: Ogawa, H., Takahashi, M., Kondou, Y., Toyoshima, C.
PDB entry 4ycm: Crystal structure of the calcium pump with bound marine macrolide BLS
Classification: HYDROLASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-02-20
Authors: Morita, M., Ogawa, H., Ohno, O., Yamori, T., Suenaga, K., Toyoshima, C.
PDB entry 4ycn: Crystal structure of the calcium pump with bound marine macrolide BLLB
Classification: HYDROLASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2015-02-20
Authors: Morita, M., Ogawa, H., Ohno, O., Yamori, T., Suenaga, K., Toyoshima, C.
PDB entry 4yco: E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-02-20
Authors: Byrne, R.T., Jenkins, H.T., Peters, D.T., Whelan, F., Stowell, J., Aziz, N., Kasatsky, P., Rodnina, M.V., Koonin, E.V., Konevega, A.L., Antson, A.A.
PDB entry 4ycp: E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp
Classification: Oxidoreductase/RNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2015-02-20
Authors: Byrne, R.T., Jenkins, H.T., Peters, D.T., Whelan, F., Stowell, J., Aziz, N., Kasatsky, P., Rodnina, M.V., Koonin, E.V., Konevega, A.L., Antson, A.A.
PDB entry 4ycq: Beta1 synthetic solenoid protein
Classification: STRUCTURAL PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.405 Å
Deposited: 2015-02-20
Authors: Murray, J.W.
PDB entry 4ycr: Structure determination of an integral membrane protein at room temperature from crystals in situ
Classification: MEMBRANE PROTEIN
Source organism: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-02-20
Authors: Axford, D., Hu, N.J., Foadi, J., Choudhury, H.G., Iwata, S., Beis, K., Evans, G., Alguel, Y.
PDB entry 4ycs: Crystal structure of putative lipoprotein from Peptoclostridium difficile 630 (fragment)
Classification: HYDROLASE
Source organism: Peptoclostridium difficile 630
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2015-02-20
Authors: Michalska, K., Wu, R., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 4yct: Endothiapepsin in complex with fragment 216
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2015-02-20
Authors: Stieler, M., Heine, A., Klebe, G.
PDB entry 4ycu: Crystal structure of cladosporin in complex with human lysyl-tRNA synthetase
Classification: ligase/ ligase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-02-20
Authors: Fang, P., Wang, J., Guo, M.
PDB entry 4ycv: Crystal structure of cladosporin in complex with plasmodium lysyl-tRNA synthetase
Classification: ligase/ligase inhibitor
Source organism: Plasmodium falciparum (isolate NF54)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.406 Å
Deposited: 2015-02-20
Authors: Fang, P., Wang, J., Guo, M.
PDB entry 4ycw: Crystal structure of cladosporin in complex with plasmodium like human lysyl-tRNA synthetase mutant
Classification: ligase/ligase inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-02-20
Authors: Fang, P., Wang, J., Guo, M.
PDB entry 4ycx: Binary complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate
Classification: transferase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-02-20
Authors: Moon, A.F., Gosavi, R.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.
PDB entry 4ycy: Endothiapepsin in complex with fragment 218
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.699 Å
Deposited: 2015-02-20
Authors: Stieler, M., Heine, A., Klebe, G.
PDB entry 4ycz: Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA)
Classification: STRUCTURAL PROTEIN
Source organism: Thielavia heterothallica
Experimental method: X-RAY DIFFRACTION
Resolution: 4.1 Å
Deposited: 2015-02-20
Authors: Kelley, K., Knockenhauer, K.E., Schwartz, T.U.
PDB entry 4yd0: Influenza polymerase basic protein 2 (PB2) bound to an azaindole-tetrazole inhibitor
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2015-02-20
Authors: Jacobs, M.D.
PDB entry 4yd1: Ternary complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate and an incoming nonhydrolyzable dUMPNPP
Classification: transferase/dna
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2015-02-20
Authors: Moon, A.F., Gosavi, R.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.
PDB entry 4yd2: Nicked complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate
Classification: transferase/dna
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.471 Å
Deposited: 2015-02-20
Authors: Moon, A.F., Gosavi, R.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.
PDB entry 4yd3: Endothiapepsin in complex with fragment 224
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.248 Å
Deposited: 2015-02-20
Authors: Stieler, M., Heine, A., Klebe, G.
PDB entry 4yd4: Endothiapepsin in complex with fragment 227
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2015-02-20
Authors: Stieler, M., Heine, A., Klebe, G.
PDB entry 4yd5: Endothiapepsin in complex with fragment 236
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.209 Å
Deposited: 2015-02-20
Authors: Stieler, M., Heine, A., Klebe, G.
PDB entry 4yd6: Endothiapepsin in complex with fragment 240
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.298 Å
Deposited: 2015-02-21
Authors: Stieler, M., Heine, A., Klebe, G.
PDB entry 4yd7: Endothiapepsin in complex with fragment 255
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.419 Å
Deposited: 2015-02-21
Authors: Stieler, M., Heine, A., Klebe, G.
PDB entry 4yd8: Bardet-Biedl Syndrome 9 Protein (aa1-407), Homo sapiens
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-02-21
Authors: Knockenhauer, K.E., Schwartz, T.U.
PDB entry 4yd9: Crystal structure of squid hemocyanin
Classification: OXYGEN TRANSPORT
Source organism: Todarodes pacificus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-02-21
Authors: Matsuno, A., Gai, Z., Kato, K., Tanaka, Y., Yao, M.
PDB entry 4yda: Crystal structure of R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal at 1.95 angstrom - after 1hour visible light irradiation - 3rd cycle
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.951 Å
Deposited: 2015-02-21
Authors: Nosrati, M., Geiger, J.H.
PDB entry 4ydb: Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding Protein II in complex with Retinal at 2.03 angstrom -UV irradiated crystal- 3rd cycle
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2015-02-21
Authors: Nosrati, M., Geiger, J.H.
PDB entry 4ydd: Crystal structure of the perchlorate reductase PcrAB from Azospira suillum PS
Classification: OXIDOREDUCTASE
Source organism: Dechlorosoma suillum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2015-02-21
Authors: Tsai, C.-L., Youngblut, M.D., Tainer, J.A.
PDB entry 4yde: CRYSTAL STRUCTURE OF CANDIDA ALBICANS PROTEIN FARNESYLTRANSFERASE BINARY COMPLEX WITH THE ISOPRENOID FARNESYLDIPHOSPHATE
Classification: TRANSFERASE
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.701 Å
Deposited: 2015-02-22
Authors: Kumar, S., Mabanglo, M.F., Hast, M.A., Shi, Y., Beese, L.S.
PDB entry 4ydf: Crystal structure of compound 9 in complex with HTLV-1 Protease
Classification: HYDROLASE
Source organism: Human T-lymphotropic virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.804 Å
Deposited: 2015-02-22
Authors: Kuhnert, M., Blum, A., Steuber, H., Diederich, W.E.
PDB entry 4ydg: Crystal structure of compound 10 in complex with HTLV-1 Protease
Classification: HYDROLASE
Source organism: Human T-cell leukemia virus 1 (strain Japan ATK-1 subtype A)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2015-02-22
Authors: Kuhnert, M., Blum, A., Steuber, H., Diederich, W.E.
PDB entry 4ydh: The structure of human FMNL1 N-terminal domains bound to Cdc42
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2015-02-22
Authors: Kuhn, S., Anand, K., Geyer, M.
PDB entry 4ydi: Crystal structure of broad and potently neutralizing VRC01-class antibody Z258-VRC27.01, isolated from human donor Z258, in complex with HIV-1 gp120 from clade A strain Q23.17
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.452 Å
Deposited: 2015-02-22
Authors: Zhou, T., Srivatsan, S., Kwong, P.D.
PDB entry 4ydj: Crystal structure of broadly and potently neutralizing antibody 44-VRC13.01 in complex with HIV-1 clade AE strain 93TH057 gp120
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.308 Å
Deposited: 2015-02-22
Authors: Zhou, T., Moquin, S., Kwong, P.D.
PDB entry 4ydk: Crystal structure of broadly and potently neutralizing antibody C38-VRC16.01 in complex with HIV-1 clade AE strain 93TH057 gp120
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.051 Å
Deposited: 2015-02-22
Authors: Zhou, T., Moquin, S., Zheng, A., Kwong, P.D.
PDB entry 4ydl: Crystal structure of broadly and potently neutralizing antibody C38-VRC18.02 in complex with HIV-1 clade AE strain 93TH057gp120
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-02-22
Authors: Zhou, T., Srivatsan, S., Kwong, P.D.
PDB entry 4ydm: High resolution crystal structure of human transthyretin bound to ligand and conjugates of 3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl)phenyl fluorosulfate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2015-02-22
Authors: Connelly, S., Bradbury, N.C.
PDB entry 4ydn: High resolution crystal structure of human transthyretin bound to ligand and conjugates of 4-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl)phenyl fluorosulfate
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2015-02-22
Authors: Connelly, S., Bradbury, N.C.
PDB entry 4ydo: CRYSTAL STRUCTURE OF CANDIDA ALBICANS PROTEIN FARNESYLTRANSFERASE IN APO FORM
Classification: TRANSFERASE
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-02-22
Authors: Kumar, S., Mabanglo, M.F., Hast, M.A., Shi, Y., Beese, L.S.
PDB entry 4ydp: Crystal structure of N-terminal PDZ domain of ZASP in complex with myotilin C-terminal peptide.
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-02-22
Authors: Grishkovskaya, I., Onipe, A., Kontaxis, G., Djinovic-Carugo, K.
PDB entry 4ydq: Crystal Structure of Prolyl-tRNA Synthetase (PRS) from Plasmodium falciparum in complex with Halofuginone and AMPPNP
Classification: LIGASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-02-23
Authors: Jain, V., Yogavel, M., Sharma, A.
PDB entry 4ydr: Crystal structure of oxidized homoserine dehydrogenase of Sulfolobus tokodaii
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-02-23
Authors: Goto, M., Yoshimune, K., Kaneko, R.
PDB entry 4yds: FlaH from Sulfolobus acidocaldarius with ATP and Mg-Ion
Classification: HYDROLASE
Source organism: Sulfolobus acidocaldarius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-02-23
Authors: Reindl, S., Arvai, A.S., Tainer, J.A.
PDB entry 4ydt: Beta1 synthetic solenoid protein
Classification: STRUCTURAL PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2015-02-23
Authors: Murray, J.W.
PDB entry 4ydu: Crystal structure of E. coli YgjD-YeaZ heterodimer in complex with ADP
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2015-02-23
Authors: Zhang, W., Collinet, B., Perrochia, L., Durand, D., Van Tilbeurgh, H.
PDB entry 4ydv: STRUCTURE OF THE ANTIBODY 7B2 THAT CAPTURES HIV-1 VIRIONS
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-02-23
Authors: Nicely, N.I., Pemble IV, C.W.
PDB entry 4ydw: CRYSTAL STRUCTURE OF ANTI-IL4 DARPIN 44C12V5
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-02-23
Authors: Teplyakov, A., Obmolova, G., Gilliland, G.
PDB entry 4ydx: Crystal structure of cisplatin bound to a human copper chaperone (monomer) - new refinement
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.602 Å
Deposited: 2015-02-23
Authors: Shabalin, I.G., Boal, A.K., Dauter, Z., Jaskolski, M., Minor, W., Rosenzweig, A.C., Wlodawer, A.
PDB entry 4ydy: CRYSTAL STRUCTURE OF DARPIN 44C12V5 IN COMPLEX WITH HUMAN IL-4
Classification: CYTOKINE/DE NOVO PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-02-23
Authors: Teplyakov, A., Obmolova, G., Gilliland, G.
PDB entry 4ydz: Stress-induced protein 1 from Caenorhabditis elegans
Classification: CHAPERONE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2015-02-23
Authors: Fleckenstein, T., Kastenmueller, A., Stein, M.L., Peters, C., Daake, M., Krause, M., Weinfurtner, D., Haslbeck, M., Weinkauf, S., Groll, M., Buchner, J.
PDB entry 4ye0: Stress-induced protein 1 truncation mutant (43 - 140) from Caenorhabditis elegans
Classification: CHAPERONE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-02-23
Authors: Fleckenstein, T., Kastenmueller, A., Stein, M.L., Peters, C., Daake, M., Krause, M., Weinfurtner, D., Haslbeck, M., Weinkauf, S., Groll, M., Buchner, J.
PDB entry 4ye1: A cytochrome c plus calixarene structure - alternative ligand binding mode
Classification: ELECTRON TRANSPORT
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2015-02-23
Authors: Mallon, M.M., McGovern, R.E., McCarty, A.A., Crowley, P.B.
PDB entry 4ye2: The 1.35 structure of a viral RNase L antagonist reveals basis for the 2'-5'-oligoadenylate binding and enzyme activity.
Classification: VIRAL PROTEIN
Source organism: Rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 3.098 Å
Deposited: 2015-02-23
Authors: Hu, L., Sankaran, B., Prasad, B.V.V.
PDB entry 4ye3: Crystal Structure of Multidrug Resistant HIV-1 Protease Clinical Isolate PR20 with Inhibitor GRL-4410A
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus type 1 group M subtype B
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2015-02-23
Authors: Agniswamy, J., Weber, I.T.
PDB entry 4ye4: Crystal Structure of Neutralizing Antibody HJ16 in Complex with HIV-1 gp120
Classification: Viral protein/Immune system
Source organism: Homo sapiens; Human immunodeficiency virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2015-02-23
Authors: Kwong, P.D., Chen, L., Zhou, T.
PDB entry 4ye5: The crystal structure of a peptidoglycan synthetase from Bifidobacterium adolescentis ATCC 15703
Classification: penicillin binding protein
Source organism: Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.052 Å
Deposited: 2015-02-23
Authors: Cuff, M., Tan, K., Joachimiak, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
PDB entry 4ye6: The crystal structure of the intact human GlnRS
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-02-23
Authors: Ognjenovic, J., Wu, J., Ling, J., Simonovic, M.
PDB entry 4ye7: N-terminal domain of Orf22, a Cydia pomonella granulovirus envelope protein
Classification: VIRAL PROTEIN
Source organism: Cydia pomonella granulosis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-02-23
Authors: Busby, J.N., Metcalf, P.
PDB entry 4ye8: The crystal structure of the Y57H mutant of human GlnRS
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2015-02-23
Authors: Ognjenovic, J., Wu, J., Ling, J., Simonovic, M.
PDB entry 4ye9: The crystal structure of the G45V mutant of human GlnRS
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-02-23
Authors: Ognjenovic, J., Wu, J., Ling, J., Simonovic, M.
PDB entry 4yea: Crystal structure of cisplatin bound to a human copper chaperone (dimer) - new refinement
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2015-02-23
Authors: Shabalin, I.G., Dauter, Z., Jaskolski, M., Minor, W., Wlodawer, A.
PDB entry 4yeb: Structural characterization of a synaptic adhesion complex
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2015-02-23
Authors: Ranaivoson, F.M., Liu, Q., Martini, F., Bergami, F., von Daake, S., Li, S., Lee, D., Demeler, B., Hendrickson, W.A., Comoletti, D.
PDB entry 4yec: Crystal structure of a clostripain (PARMER_00083) from Parabacteroides merdae ATCC 43184 in complex with peptide inhibitor Ac-VLTK-AOMK
Classification: Unknown Function/Inhibitor
Source organism: Parabacteroides merdae ATCC 43184; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2015-02-24
Authors: Wolan, D.W., Gonzalez-Paez, G.E., Chatterjee, S.
PDB entry 4yed: TcdA (CsdL)
Classification: LIGASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-02-24
Authors: Kim, S., Park, S.Y.
PDB entry 4yee: beta2 carbohydrate binding module (CBM) of AMP-activated protein kinase (AMPK) in complex with glucosyl-beta-cyclodextrin
Classification: SUGAR BINDING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-02-24
Authors: Mobbs, J., Gorman, M.A., Parker, M.W., Gooley, P.R., Griffin, M.
PDB entry 4yef: beta1 carbohydrate binding module (CBM) of AMP-activated protein kinase (AMPK) in complex with glucosyl-beta-cyclododextrin
Classification: SUGAR BINDING PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2015-02-24
Authors: Mobbs, J., Gorman, M.A., Parker, M.W., Gooley, P.R., Griffin, M.
PDB entry 4yeg: Characterisation of Polyphosphate Kinase 2 from the Intracellular Pathogen Francisella tularensis
Classification: TRANSFERASE
Source organism: Francisella tularensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2015-02-24
Authors: Parnell, A.E., Roach, P.L.
PDB entry 4yeh: Crystal structure of Mg2+ ion containing hemopexin fold from Kabuli chana (chickpea white) at 2.45A resolution reveals a structural basis of metal ion transport
Classification: PLANT PROTEIN
Source organism: Cicer arietinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2015-02-24
Authors: Kumar, S., Singh, A., Yamini, S., Bhushan, A., Dey, S., Sharma, S., Singh, T.P.
PDB entry 4yei: Beta1mut synthetic solenoid protein
Classification: STRUCTURAL PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2015-02-24
Authors: Murray, J.W., Kraatz, S.
PDB entry 4yej: Tailspike protein double mutant D339A/E372Q of E. coli bacteriophage HK620 in complex with pentasaccharide
Classification: METAL BINDING PROTEIN
Source organism: Enterobacteria phage HK620
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-02-24
Authors: Gohlke, U., Broeker, N.K., Heinemann, U., Seckler, R., Barbirz, S.
PDB entry 4yek: X-ray structure of the thymidine phosphorylase from Salmonella typhimurium in complex with thymidine
Classification: TRANSFERASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2015-02-24
Authors: Balaev, V.V., Lashkov, A.A., Gabdulkhakov, A.G., Betzel, C., Mikhailov, A.M.
PDB entry 4yel: Tailspike protein double mutant D339A/E372A of E. coli bacteriophage HK620 in complex with hexasaccharide
Classification: METAL BINDING PROTEIN
Source organism: Enterobacteria phage HK620
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2015-02-24
Authors: Gohlke, U., Broeker, N.K., Heinemann, U., Seckler, R., Barbirz, S.
PDB entry 4yem: Carboplatin binding to HEWL in NaBr crystallisation conditions studied at an X-ray wavelength of 0.9163A - new refinement
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2015-02-24
Authors: Shabalin, I.G., Dauter, Z., Jaskolski, M., Minor, W., Wlodawer, A.
PDB entry 4yen: Room temperature X-ray diffraction studies of cisplatin binding to HEWL in DMSO media after 14 months of crystal storage - new refinement
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-02-24
Authors: Shabalin, I.G., Dauter, Z., Jaskolski, M., Minor, W., Wlodawer, A.
PDB entry 4yeo: Triclinic HEWL co-crystallised with cisplatin, studied at a data collection temperature of 150K - new refinement
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2015-02-24
Authors: Shabalin, I.G., Dauter, Z., Jaskolski, M., Minor, W., Wlodawer, A.
PDB entry 4yep: L4b Domain of Human Laminin alpha-2
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2015-02-24
Authors: Toot, M., Gat, Y., Fass, D.
PDB entry 4yeq: L4b Domain of Human Laminin alpha-2
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-02-24
Authors: Toot, M., Gat, Y., Fass, D.
PDB entry 4yer: Crystal structure of an ABC transporter ATP-binding protein (TM_1403) from Thermotoga maritima MSB8 at 2.35 A resolution
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2015-02-24
Authors: Joint Center for Structural Genomics (JCSG)
PDB entry 4yes: Thrombin in complex with (S)-(4-chloro-2-((1-(5-methyl-1H-pyrrole-2-carbonyl)pyrrolidine-2-carboxamido)methyl)phenyl)methanaminium
Classification: Hydrolase/Hydrolase Inhibitor
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-02-24
Authors: Orth, P.
PDB entry 4yet: X-ray crystal structure of superoxide dismutase from Babesia bovis solved by Sulfur SAD
Classification: OXIDOREDUCTASE
Source organism: Babesia bovis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2015-02-24
Authors: Fairman, J.W., Clifton, M.C., Abendroth, J., Edwards, T.E., Lorimer, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 4yeu: ELIC-GLIC chimera in the resting conformation
Classification: MEMBRANE PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 4.6 Å
Deposited: 2015-02-24
Authors: Schmandt, N., Vivien, Y., Lodowski, D., Chakrapani, S.
PDB entry 4yew: HUab-19bp
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.683 Å
Deposited: 2015-02-24
Authors: Hammel, M., Reyes, F.E., Parpana, R., Tainer, J.A., Adhya, S., Amlanjyoti, D.
PDB entry 4yex: HUaa-19bp
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-02-24
Authors: Hammel, M., Reyes, F.E., Parpana, R., Tainer, J.A., Adhya, S., Amlanjyoti, D.
PDB entry 4yey: HUaa-20bp
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.354 Å
Deposited: 2015-02-24
Authors: Hammel, M., Reyes, F.E., Parpana, R., Tainer, J.A., Adhya, S., Amlanjyoti, D.
PDB entry 4yf0: HU38-19bp
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2015-02-24
Authors: Hammel, M., Reyes, F.E., Parpana, R., Tainer, J.A., Adhya, S., Amlanjyoti, D.
PDB entry 4yf1: 1.85 angstrom crystal structure of lmo0812 from Listeria monocytogenes EGD-e
Classification: HYDROLASE
Source organism: Listeria monocytogenes serovar 1/2a
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-02-24
Authors: Krishna, S.N., Light, S.H., Filippova, E.V., Minasov, G., Kiryukhina, O., Jedrzejczak, R., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)
PDB entry 4yf2: Crystal structure of mouse sperm C-type lysozyme-like protein 1
Classification: CELL ADHESION, SUGAR BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2015-02-24
Authors: Zheng, H., Mandal, A., Shumilin, I.A., Shabalin, I.G., Herr, J.C., Minor, W.
PDB entry 4yf4: Crystal structure of Rv1284 in the presence of polycarpine at mildly acidic pH
Classification: LYASE
Source organism: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-02-25
Authors: Hofmann, A.
PDB entry 4yf5: Crystal structure of Rv1284 in the presence of polycarpine at acidic pH
Classification: LYASE
Source organism: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-02-25
Authors: Hofmann, A.
PDB entry 4yf6: Crystal structure of oxidised Rv1284
Classification: LYASE
Source organism: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.002 Å
Deposited: 2015-02-25
Authors: Hofmann, A.
PDB entry 4yf9: Structure of N-acylhomoserine lactone acylase MacQ
Classification: HYDROLASE
Source organism: Acidovorax sp. MR-S7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-02-25
Authors: Yasutake, Y., Kusada, H., Kimura, N.
PDB entry 4yfa: Structure of N-acylhomoserine lactone acylase MacQ in complex with decanoic acid
Classification: HYDROLASE
Source organism: Acidovorax sp. MR-S7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-02-25
Authors: Yasutake, Y., Kusada, H., Kimura, N.
PDB entry 4yfb: Structure of N-acylhomoserine lactone acylase MacQ in complex with phenylacetic acid
Classification: HYDROLASE
Source organism: Acidovorax sp. MR-S7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2015-02-25
Authors: Yasutake, Y., Kusada, H., Kimura, N.
PDB entry 4yfd: Crystal structure PTP delta Ig1-Fn2 in complex with IL-1RAcP
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.253 Å
Deposited: 2015-02-25
Authors: Yamagata, A., Fukai, S.
PDB entry 4yfe: Crystal structure of PTP delta Fn1-Fn2
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.972 Å
Deposited: 2015-02-25
Authors: Yamagata, A., Fukai, S.
PDB entry 4yff: TNNI3K complexed with inhibitor 2
Classification: Transferase/Transferase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2015-02-25
Authors: Shewchuk, L.M., Wang, L., Lawhorn, B.G.
PDB entry 4yfg: Crystal structure of PTP delta meA3/meB minus variant Ig1-Fn1
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.491 Å
Deposited: 2015-02-25
Authors: Yamagata, A., Fukai, S.
PDB entry 4yfh: HU38-20bp
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2015-02-25
Authors: Hammel, M., Reyes, F.E., Parpana, R., Tainer, J.A., Adhya, S., Amlanjyoti, D.
PDB entry 4yfi: TNNI3K complexed with inhibitor 1
Classification: Transferase/Transferase Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-02-25
Authors: Shewchuk, L.M., Wang, L., Lawhorn, B.G.