LiteFold/PDB huggingface dataset:
PDB entry 8a9e: Lysozyme, 9-11 fs FEL pulses as determined by XTCAV
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.665 Å
Deposited: 2022-06-28
Authors: Barends, T., Nass, K., Gorel, A., Schlichting, I.
PDB entry 8a9f: Thaumatin, 9-11 fs FEL pulses as determined by XTCAV
Classification: ANTIFUNGAL PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-06-28
Authors: Barends, T., Nass, K., Gorel, A., Schlichting, I.
PDB entry 8a9g: Binary complex of 14-3-3 zeta Glucocorticoid Receptor (GR) pT524 peptide stabilised by (R)-para chloropyrrolidone1
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.961 Å
Deposited: 2022-06-28
Authors: Munier, C.C., Edman, K., Perry, M.W.D., Ottmann, C.
PDB entry 8a9i: PI3KC2a core in complex with PITCOIN1
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2022-06-28
Authors: Lo, W.T., Roske, Y., Daumke, O., Haucke, V.
PDB entry 8a9j: Cryo-EM structure of USP1-UAF1 bound to FANCI and mono-ubiquitinated FANCD2 without ML323 (consensus reconstruction)
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-06-28
Authors: Rennie, M.L., Walden, H.
PDB entry 8a9k: Cryo-EM structure of USP1-UAF1 bound to FANCI and mono-ubiquitinated FANCD2 with ML323 (consensus reconstruction)
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2022-06-28
Authors: Rennie, M.L., Walden, H.
PDB entry 8a9l: Cryo-EM structure of alpha-synuclein filaments from Parkinson's disease and dementia with Lewy bodies
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2022-06-28
Authors: Yang, Y., Shi, Y., Schweighauser, M., Zhang, X.J., Kotecha, A., Murzin, A.G., Garringer, H.J., Cullinane, P., Saito, Y., Foroud, T., Warner, T.T., Hasegawa, K., Vidal, R., Murayama, S., Revesz, T., Ghetti, B., Hasegawa, M., Lashley, T., Scheres, H.W.S., Goedert, M.
PDB entry 8a9m: Hippeastrum hybrid agglutinin, HHA, complex with beta-mannose
Classification: SUGAR BINDING PROTEIN
Source organism: Hippeastrum hybrid cultivar
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-28
Authors: Rizkallah, P.J.
PDB entry 8a9n: Structure of DpA polyamine acetyltransferase in complex with 1,3-DAP
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.854 Å
Deposited: 2022-06-28
Authors: Garcia-Pino, A., Jurenas, D.
PDB entry 8a9o: Structure of the polyamine acetyltransferase DpA
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.587 Å
Deposited: 2022-06-28
Authors: Garcia-Pino, A., Jurenas, D.
PDB entry 8a9p: Crystal structure of CYP142 from Mycobacterium tuberculosis in complex with a fragment
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-06-29
Authors: Snee, M., Katariya, M., Levy, C., Leys, D.
PDB entry 8a9q: Computational design of stable mammalian serum albumins for bacterial expression
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-29
Authors: Khersonsky, O., Dym, O., Fleishman, J.S.
PDB entry 8a9r: Tetragonal Hen Egg-White (HEW) Lysozyme soaked in reduced resazurin in a glovebox and flash-cooled using a miniature-airlock
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-06-29
Authors: van der Linden, P., Engilberge, S., Atta, M., Carpentier, P.
PDB entry 8a9s: Crystal structure of Ca2+-discharged obelin in complex with coelenteramine-v
Classification: LUMINESCENT PROTEIN
Source organism: Obelia longissima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-06-29
Authors: Kovaleva, M.I., Natashin, P.V., Schevtsov, M.B., Eremeeva, E.V., Bukhdruker, S.S., Dmitrieva, D.A., Mishin, A.V., Vysotski, E.S., Borshchevskiy, V.I.
PDB entry 8a9t: Tubulin-[1,2]oxazoloisoindole-1 complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.304 Å
Deposited: 2022-06-29
Authors: Prota, A.E., Abel, A.-C., Steinmetz, M.O., Barraja, P., Montalbano, A., Spano, V.
PDB entry 8a9u: Full AAV3B-VP1KO virion
Classification: VIRUS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-29
Authors: Arriaga, I., Abrescia, N.G.A.
PDB entry 8a9v: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a linear di-adenosine derivative
Classification: TRANSFERASE
Source organism: Listeria monocytogenes EGD-e
Experimental method: X-RAY DIFFRACTION
Resolution: 1.984 Å
Deposited: 2022-06-29
Authors: Gelin, M., Labesse, G.
PDB entry 8a9w: Crystal structure of PulL C-ter domain
Classification: STRUCTURAL PROTEIN
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.895 Å
Deposited: 2022-06-29
Authors: Dazzoni, R., Li, Y., Lopez-Castilla, A., Brier, S., Mechaly, A., Cordier, F., Haouz, A., Nilges, M., Francetic, O., Bardiaux, B., Izadi-Pruneyre, N.
PDB entry 8a9x: Crystal structure of PulM C-ter domain
Classification: STRUCTURAL PROTEIN
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.523 Å
Deposited: 2022-06-29
Authors: Dazzoni, R., Li, Y., Lopez-Castilla, A., Brier, S., Mechaly, A., Cordier, F., Haouz, A., Nilges, M., Francetic, O., Bardiaux, B., Izadi-Pruneyre, N.
PDB entry 8a9y: Substrate-free levan utilisation machinery (utilisome)
Classification: TRANSPORT PROTEIN
Source organism: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50); Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-06-29
Authors: White, J.B.R., Silale, A., Ranson, N.A., van den Berg, B.
PDB entry 8a9z: Tubulin-[1,2]oxazoloisoindole-2e complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.294 Å
Deposited: 2022-06-29
Authors: Prota, A.E., Abel, A.-C., Steinmetz, M.O., Barraja, P., Montalbano, A., Spano, V.
PDB entry 8aa0: Levan utilisation machinery (utilisome) with levan fructo-oligosaccharides DP 8-12
Classification: TRANSPORT PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-06-29
Authors: White, J.B.R., Silale, A., Ranson, N.A., van den Berg, B.
PDB entry 8aa1: Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-06-29
Authors: White, J.B.R., Silale, A., Ranson, N.A., van den Berg, B.
PDB entry 8aa2: Inactive levan utilisation machinery (utilisome) in the presence of levan fructo-oligosaccharides DP 15-25
Classification: TRANSPORT PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-29
Authors: White, J.B.R., Silale, A., Ranson, N.A., van den Berg, B.
PDB entry 8aa3: Core SusCD transporter units from the inactive levan utilisome in the presence of levan fructo-oligosaccharides DP 15-25
Classification: TRANSPORT PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-06-29
Authors: White, J.B.R., Silale, A., Ranson, N.A., van den Berg, B.
PDB entry 8aa4: SusC components of the dextran utilisation system (utilisome)
Classification: TRANSPORT PROTEIN
Source organism: Bacteroides thetaiotaomicron VPI-5482
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-29
Authors: White, J.B.R., Silale, A., Ranson, N.A., van den Berg, B.
PDB entry 8aa5: Cryo-EM structure of the strand transfer complex of the TnsB transposase (type V-K CRISPR-associated transposon)
Classification: DNA BINDING PROTEIN
Source organism: Scytonema hofmannii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2022-06-30
Authors: Tenjo-Castano, F., Sofos, N., Lopez-Mendez, B., Stutzke, L.S., Fuglsang, A., Stella, S., Montoya, G.
PDB entry 8aa6: CAII in complex with meta-carboran-propylsulfonamid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2022-06-30
Authors: Brynda, J., Rezacova, P., Kugler, M.
PDB entry 8aa7: Crystal structure of a staphylococcal orthologue of CYP134A1 (CYPX) in complex with a heme coordinated fragment
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-06-30
Authors: Snee, M., Katariya, M., Levy, C., Leys, D.
PDB entry 8aa8: 30S ribosomal protein S24e from Thermococcus barophilus
Classification: GENE REGULATION
Source organism: Thermococcus barophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-06-30
Authors: Calio, A., Hoh, F.
PDB entry 8aa9: Crystal structure of the Rpa1 AROD-OB-1 domains
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi GE5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-06-30
Authors: Madru, C., Legrand, P., Sauguet, L.
PDB entry 8aaa: Crystal structure of SARS-CoV-2 S RBD in complex with a stapled peptide
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-06-30
Authors: Brear, P., Chen, L., Gaynor, K., Harman, M., Dods, R., Hyvonen, M.
PDB entry 8aab: S148F mutant of blue-to-red fluorescent timer mRubyFT
Classification: FLUORESCENT PROTEIN
Source organism: Entacmaea quadricolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-06-30
Authors: Boyko, K.M., Nikolaeva, A.Y., Vlaskina, A.V., Dorovatovskii, P.V., Subach, O.M., Popov, V.O., Subach, F.V.
PDB entry 8aac: African cichlid nackednavirus capsid at pH 7.5
Classification: VIRAL PROTEIN
Source organism: African cichlid nackednavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-01
Authors: Pfister, S., Rabl, J., Boehringer, D., Meier, B.H.
PDB entry 8aad: Two carbons pendant pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-07-01
Authors: Ferraroni, M., Bazzicalupi, C., Gratteri, P., Papi, F.
PDB entry 8aae: CAII in complex with para-carboran-propylsulfonamid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2022-07-01
Authors: Brynda, J., Rezacova, P.
PDB entry 8aaf: Yeast RQC complex in state G
Classification: TRANSLATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-07-01
Authors: Tesina, P., Buschauer, R., Beckmann, R.
PDB entry 8aag: H1-bound palindromic nucleosome, state 1
Classification: GENE REGULATION
Source organism: Homo sapiens; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2022-07-01
Authors: Alegrio Louro, J., Beinsteiner, B., Cheng, T.C., Patel, A.K.M., Boopathi, R., Angelov, D., Hamiche, A., Bednar, J., Kale, S., Dimitrov, S., Klaholz, B.
PDB entry 8aai: Crystal structure of the PDZ tandem of syntenin in complex with fragment E5
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2022-07-01
Authors: Feracci, M., Barral, K.
PDB entry 8aaj: Crystal structure of the Pyrococcus abyssi RPA (apo form)
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi GE5
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2022-07-01
Authors: Legrand, P., Madru, C., Sauguet, L.
PDB entry 8aak: Crystal structure of the PDZ tandem of syntenin in complex with compound 29
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.554 Å
Deposited: 2022-07-01
Authors: Feracci, M., Barral, K.
PDB entry 8aam: Crystal structure of MreB from Geobacillus stearothermophilus ATCC7953
Classification: STRUCTURAL PROTEIN
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-07-01
Authors: Li de la Sierra-Gallay, I.
PDB entry 8aan: The nucleoprotein complex of Rep protein with iteron containing dsDNA and DUE ssDNA.
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-07-01
Authors: Nowacka, M., Wegrzyn, K.
PDB entry 8aao: Crystal structure of the PDZ tandem of syntenin in complex with compound 95
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.469 Å
Deposited: 2022-07-01
Authors: Feracci, M., Barral, K.
PDB entry 8aap: Crystal structure of the PDZ tandem of syntenin in complex with compound SYNTi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.174 Å
Deposited: 2022-07-01
Authors: Feracci, M., Barral, K.
PDB entry 8aaq: Crystal structure of the carotenoid-binding protein domain from silkworm Bombyx mori (BmCBP), CRT-416 form
Classification: TRANSPORT PROTEIN
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-01
Authors: Varfolomeeva, L.A., Slonimskiy, Y.B., Egorkin, N.A., Minyaev, M.E., Faletrov, Y.V., Boyko, K.M., Sluchanko, N.N.
PDB entry 8aas: Crystal structure of the Pyrococcus abyssi RPA trimerization core bound to poly-dT20 ssDNA
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi GE5; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-07-01
Authors: Madru, C., Legrand, P., Sauguet, L.
PDB entry 8aat: X-RAY STRUCTURE REFINEMENT AND COMPARISON OF THREE FORMS OF MITOCHONDRIAL ASPARTATE AMINOTRANSFERASE
Classification: TRANSFERASE(AMINOTRANSFERASE)
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1991-12-02
Authors: Mcphalen, C.A., Vincent, M.G., Jansonius, J.N.
PDB entry 8aau: LIM Domain Kinase 1 (LIMK1) bound to LIMKi3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2022-07-03
Authors: Mathea, S., Salah, E., Hanke, T., Knapp, S.
PDB entry 8aav: Human heavy chain ferritin with introduced Cys residues modified with C10 ligand
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-03
Authors: Boehler, H., Beck, T.
PDB entry 8aay: Nudaurelia capensis omega virus maturation intermediate captured at pH5.6 (insect cell expressed VLPs): small class from symmetry expansion
Classification: VIRUS LIKE PARTICLE
Source organism: Nudaurelia capensis omega virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2022-07-04
Authors: Castells-Graells, R., Hesketh, E.L., Johnson, J.E., Ranson, N.A., Lawson, D.M., Lomonossoff, G.P.
PDB entry 8aaz: High resolution X-ray analysis of ATP lysozyme complex in the presence of 80 mM ATP
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2022-07-04
Authors: Zalar, M., Curtis, R.
PDB entry 8ab0: Complex of RecO-RecR-DNA from Thermus thermophilus.
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.09 Å
Deposited: 2022-07-04
Authors: Nirwal, S., Czarnocki-Cieciura, M., Chaudhary, A., Zajko, W., Skowronek, K., Chamera, S., Figiel, M., Nowotny, M.
PDB entry 8ab1: Crystal structure of the PulL-PulM C-terminal domain heterocomplex
Classification: STRUCTURAL PROTEIN
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2022-07-04
Authors: Dazzoni, R., Li, Y., Lopez-Castilla, A., Brier, S., Mechaly, A., Cordier, F., Haouz, A., Nilges, M., Francetic, O., Bardiaux, B., Izadi-Pruneyre, N.
PDB entry 8ab2: Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in its apo form.
Classification: OXIDOREDUCTASE
Source organism: Cyanobacterium aponinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-04
Authors: Robin, A.Y., Girard, E., Madern, D.
PDB entry 8ab3: Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in complex with oxamate, NADH and FBP.
Classification: OXIDOREDUCTASE
Source organism: Cyanobacterium aponinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.616 Å
Deposited: 2022-07-04
Authors: Robin, A.Y., Girard, E., Madern, D.
PDB entry 8ab4: Crystal structure of MreB from Geobacillus stearothermophilus ATCC7953 in complex with GTP
Classification: STRUCTURAL PROTEIN
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2022-07-04
Authors: Li de la Sierra-Gallay, I.
PDB entry 8ab5: Structure of E. coli GlpG in complex with peptide derived inhibitor Ac-VRHA-conh-[4-(4-butyl)-phenoxy-1-phenyl-2-butyl]
Classification: HYDROLASE
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-07-04
Authors: Skerlova, J., Polovinkin, V., Bach, K., Borshchevskiy, V., Strisovsky, K.
PDB entry 8ab6: Complex III2 from Yarrowia lipolytica, combined datasets, consensus refinement
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8ab7: Complex III2 from Yarrowia lipolytica, atovaquone and antimycin A bound
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8ab8: Complex III2, b-position, with decylubiquinone and ascorbate-reduced
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8ab9: Complex III2 from Yarrowia lipolytica, ascorbate-reduced, b-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8aba: Complex III2 from Yarrowia lipolytica, ascorbate-reduced, int-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abb: Complex III2 from Yarrowia lipolytica, ascorbate-reduced, c-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abd: Solution structure of Phen-DC3 intercalating into a quadruplex-duplex hybrid
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-07-04
Authors: Vianney, Y.M., Weisz, K.
PDB entry 8abe: Complex III2 from Yarrowia lipolytica, oxidised with ferricyanide, b-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abf: Complex III2 from Yarrowia lipolytica, oxidised with ferricyanide, int-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abg: Complex III2 from Yarrowia lipolytica, oxidised with ferricyanide, c-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abh: Complex III2 from Yarrowia lipolytica, antimycin A bound, b-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abi: Complex III2 from Yarrowia lipolytica,antimycin A bound, int-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abj: Complex III2 from Yarrowia lipolytica, antimycin A bound, c-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abk: Complex III2 from Yarrowia lipolytica, decylubiquinol bound, b-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abl: Complex III2 from Yarrowia lipolytica, with decylubiquinol and antimycin A, consensus refinement
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abm: Complex III2 from Yarrowia lipolytica, apo, b-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-04
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8abn: Solution structure of a phenyl-indoloquinoline intercalating into a quadruplex-duplex hybrid
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-07-04
Authors: Vianney, Y.M., Weisz, K.
PDB entry 8abo: Crystal structure of a staphylococcal orthologue of CYP134A1 (CYPX) in complex with a fragment
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-07-04
Authors: Snee, M., Katariya, M., Levy, C.
PDB entry 8abp: SUGAR-BINDING AND CRYSTALLOGRAPHIC STUDIES OF AN ARABINOSE-BINDING PROTEIN MUTANT (MET108LEU) WHICH EXHIBITS ENHANCED AFFINITY AND ALTERED SPECIFICITY
Classification: BINDING PROTEINS
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 1991-04-25
Authors: Vermersch, P.S., Tesmer, J.J.G., Quiocho, F.A.
PDB entry 8abq: Structure of the SNX1-SNX5 complex, Pt derivative
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-07-04
Authors: Lopez-Robles, C., Scaramuzza, S., Astorga-Simon, E.N., Banos-Mateos, S., Vidaurrazaga, A., Rojas, A.L., Castano, D., Hierro, A.
PDB entry 8abr: Crystal structure of CYP109A2 from Bacillus megaterium bound with putative ligands hexanoic acid and octanoic acid
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium DSM 319
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-04
Authors: Jozwik, I.K., Rozeboom, H.J., Thunnissen, A.-M.W.H.
PDB entry 8abs: Crystal structure of CYP109A2 from Bacillus megaterium bound with testosterone and putative ligand 4,6-dimethyloctanoic acid
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium DSM 319
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-07-04
Authors: Jozwik, I.K., Rozeboom, H.J., Thunnissen, A.-M.W.H.
PDB entry 8abt: Crystal structure of NaLdpA in complex with the product analog Resveratrol
Classification: LYASE
Source organism: Novosphingobium aromaticivorans DSM 12444
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-07-04
Authors: Zahn, M., Kuatsjah, E., Beckham, G.T., McGeehan, J.E.
PDB entry 8abu: Crystal structure of NaLdpA mutant H97Q in complex with erythro-DGPD
Classification: LYASE
Source organism: Novosphingobium aromaticivorans DSM 12444
Experimental method: X-RAY DIFFRACTION
Resolution: 1.661 Å
Deposited: 2022-07-04
Authors: Zahn, M., Kuatsjah, E., Beckham, G.T., McGeehan, J.E.
PDB entry 8abv: Crystal structure of SpLdpA in complex with erythro-DGPD
Classification: LYASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.683 Å
Deposited: 2022-07-04
Authors: Zahn, M., Kuatsjah, E., Beckham, G.T., McGeehan, J.E.
PDB entry 8abw: Crystal structure of SpLdpA in complex with threo-DGPD
Classification: LYASE
Source organism: Sphingobium sp. SYK-6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2022-07-04
Authors: Zahn, M., Kuatsjah, E., Beckham, G.T., McGeehan, J.E.
PDB entry 8abx: Crystal structure of IDO1 in complex with Apoxidole-1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-07-05
Authors: Dotsch, L., Ziegler, S., Waldmann, H., Gasper, R.
PDB entry 8aby: RNA polymerase bound to purified in vitro transcribed regulatory RNA putL - pause prone, closed clamp state
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-05
Authors: Dey, S., Weixlbaumer, A.
PDB entry 8abz: RNA polymerase at U-rich pause bound to non-regulatory RNA - pause prone, closed clamp state
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-05
Authors: Dey, S., Weixlbaumer, A.
PDB entry 8ac0: RNA polymerase at U-rich pause bound to regulatory RNA putL - active, closed clamp state
Classification: TRANSCRIPTION
Source organism: Escherichia coli BL21; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-07-05
Authors: Weixlbaumer, A., Dey, S.
PDB entry 8ac1: RNA polymerase at U-rich pause bound to non-regulatory RNA - inactive, open clamp state
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.06 Å
Deposited: 2022-07-05
Authors: Dey, S., Weixlbaumer, A.
PDB entry 8ac2: RNA polymerase- post-terminated, open clamp state
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-07-05
Authors: Dey, S., Weixlbaumer, A.
PDB entry 8ac3: Complex III2 from Yarrowia lipolytica, apo, int-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-07-05
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8ac4: Complex III2 from Yarrowia lipolytica, apo, c-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-07-05
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8ac5: Complex III2 from Yarrowia lipolytica, with decylubiquinol, oxidised, b-position
Classification: MEMBRANE PROTEIN
Source organism: Yarrowia lipolytica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-07-05
Authors: Wieferig, J.P., Kuhlbrandt, W.
PDB entry 8ac6: Nudaurelia capensis omega virus maturation intermediate captured at pH5.6 (insect cell expressed VLPs): medium class from symmetry expansion
Classification: VIRUS LIKE PARTICLE
Source organism: Nudaurelia capensis omega virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2022-07-05
Authors: Castells-Graells, R., Hesketh, E.L., Johnson, J.E., Ranson, N.A., Lawson, D.M., Lomonossoff, G.P.
PDB entry 8ac7: Structure of Pseudomonas aeruginosa aminopeptidase, PaAP
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-07-05
Authors: Harding, C.J., Czekster, C.M.
PDB entry 8ac8: The nucleoprotein complex of Rep protein with DUE ssDNA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-07-05
Authors: Nowacka, M., Wegrzyn, K., Oliwa, M., Konieczny, I.
PDB entry 8ac9: Structure of Pseudomonas aeruginosa aminopeptidase, PaAP_T
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.351 Å
Deposited: 2022-07-05
Authors: Harding, C.J., Czekster, C.M.
PDB entry 8aca: SDBC DR_0644 subunit, only-Cu Superoxide Dismutase
Classification: METAL BINDING PROTEIN
Source organism: Deinococcus radiodurans R1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2022-07-05
Authors: Farci, D., Piano, D.
PDB entry 8acb: CryoEM structure of sweet potato feathery mottle virus VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Ipomoea batatas; Sweet potato feathery mottle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-07-05
Authors: Javed, A., Byrne, J.M., Ranson, N., Lomonosoff, G.
PDB entry 8acc: CryoEM structure of sweet potato mild mottle virus VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Nicotiana tabacum; Sweet potato mild mottle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-07-05
Authors: Javed, A., Byrne, B.M., Ranson, N., Lomonosoff, G.
PDB entry 8acd: Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the non-covalent inhibitor GA-17S
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-07-05
Authors: Strater, N., Muller, C.E., Sylvester, K., Claff, T., Weisse, R.H., Gao, S., Tollefson, A.E., Liu, X., Zhan, P.
PDB entry 8acf: Structure of the argX-117 in complex with a complement C2 fragment at low pH
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-07-05
Authors: Olesen, H.G., Andersen, G.R.
PDB entry 8acg: Structure of Pseudomonas aeruginosa aminopeptidase, PaAP_T E340A mutant
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2022-07-05
Authors: Harding, C.J., Czekster, C.M.
PDB entry 8ach: Nudaurelia capensis omega virus maturation intermediate captured at pH5.6 (insect cell expressed VLPs): large class from symmetry expansion
Classification: VIRUS LIKE PARTICLE
Source organism: Nudaurelia capensis omega virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2022-07-05
Authors: Castells-Graells, R., Hesketh, E.L., Johnson, J.E., Ranson, N.A., Lawson, D.M., Lomonossoff, G.P.
PDB entry 8aci: Structure of ARG-117 Fab in complex with a fragment of complement C2, neutral pH
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-07-05
Authors: Olesen, H.G., Andersen, G.R.
PDB entry 8ack: Structure of Pseudomonas aeruginosa aminopeptidase, PaAP
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.784 Å
Deposited: 2022-07-05
Authors: Harding, C.J., Czekster, C.M.
PDB entry 8acl: Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the non-covalent inhibitor GC-14
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-07-05
Authors: Strater, N., Muller, C., Sylvester, K., Claff, T., Weisse, R.H., Gao, S., Tollefson, A.E., Liu, X., Zhan, P.
PDB entry 8acm: Crystal structure of WT p38alpha
Classification: ONCOPROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2022-07-05
Authors: Pous, J., Baginski, B., Gonzalez, L., Macias, M.J., Nebreda, A.R.
PDB entry 8acn: CRYSTAL STRUCTURES OF ACONITASE WITH ISOCITRATE AND NITROISOCITRATE BOUND
Classification: LYASE(CARBON-OXYGEN)
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1991-05-15
Authors: Lauble, H., Kennedy, M.C., Beinert, H., Stout, C.D.
PDB entry 8aco: Crystal structure of WT p38alpha
Classification: ONCOPROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-07-05
Authors: Pous, J., Baginski, B., Gonzalez, L., Macias, M.J., Nebreda, A.R.
PDB entry 8acp: RNA polymerase at U-rich pause bound to regulatory RNA putL - inactive, open clamp state
Classification: TRANSCRIPTION
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-07-06
Authors: Dey, S., Weixlbaumer, A.
PDB entry 8acq: S-layer Deinoxanthin-Binding Complex (SDBC), subunit DR_2577 assembled with its SOD DR_0644
Classification: STRUCTURAL PROTEIN
Source organism: Deinococcus radiodurans R1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2022-07-06
Authors: Farci, D., Piano, D.
PDB entry 8acr: Structure of Pseudomonas aeruginosa aminopeptidase, PaAP
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-07-06
Authors: Harding, C.J., Czekster, C.M.
PDB entry 8acs: Crystal structure of FMO from Janthinobacterium svalbardensis
Classification: FLAVOPROTEIN
Source organism: Janthinobacterium svalbardensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-07-06
Authors: Polidori, N., Galuska, P., Gruber, K.
PDB entry 8act: structure of the human beta-cardiac myosin folded-back off state
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-07-06
Authors: Grinzato, A., Kandiah, E., Robert-Paganin, J., Auguin, D., Kikuti, C., Nandwani, N., Moussaoui, D., Pathak, D., Ruppel, K.M., Spudich, J.A., Houdusse, A.
PDB entry 8acu: Structure of Bacillus subtilis Rel in complex with DarB
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2022-07-06
Authors: Garcia-Pino, A.
PDB entry 8acv: WelO5* bound to Zn(II), Cl, and 2-oxoglutarate
Classification: OXIDOREDUCTASE
Source organism: Hapalosiphon welwitschii UH IC-52-3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-07-07
Authors: Buller, R., Hueppi, S., Voss, M., Hayashi, T.
PDB entry 8acw: X-ray structure of Na+-NQR from Vibrio cholerae at 3.4 A resolution
Classification: MEMBRANE PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-07-07
Authors: Fritz, G.
PDB entry 8acx: Pathogen effector of Zymoseptoria tritici: Zt-KP4
Classification: UNKNOWN FUNCTION
Source organism: Zymoseptoria tritici
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-07
Authors: Hoh, F., Padilla, A., De Guillen, K.
PDB entry 8acy: X-ray structure of Na+-NQR from Vibrio cholerae at 3.5 A resolution
Classification: MEMBRANE PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-07-07
Authors: Fritz, G.
PDB entry 8acz: Solid-State NMR Atomic-Resolution Structure of the Protein Encoded by Gene V of fd Bacteriophage in Complex with Viral ssDNA
Classification: DNA BINDING PROTEIN
Source organism: Inoviridae
Experimental method: SOLID-STATE NMR
Deposited: 2022-07-07
Authors: Shamir, Y., Goldbourt, A.
PDB entry 8ad0: X-ray structure of Na+-NQR from Vibrio cholerae in different conformation at 3.1 A
Classification: MEMBRANE PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2022-07-07
Authors: Fritz, G.
PDB entry 8ad1: RNA polymerase at U-rich pause bound to RNA putL triple mutant - pause prone, closed clamp state
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-07-07
Authors: Dey, S., Weixlbaumer, A.
PDB entry 8ad2: Tobacco lectin Nictaba in complex with triacetylchitotriose
Classification: SUGAR BINDING PROTEIN
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-07-07
Authors: Bloch, Y., Savvides, S.N.
PDB entry 8ad3: X-ray structure of NqrF(129-408)of Vibrio cholerae variant F406A
Classification: FLAVOPROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-07-07
Authors: Fritz, G.
PDB entry 8ad4: X-ray structure of NqrF(129-408)of Vibrio cholerae in complex with NADH
Classification: FLAVOPROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-07-07
Authors: Fritz, G.
PDB entry 8ad5: X-ray structure of NqrF(129-408)of Vibrio cholerae variant F406A
Classification: FLAVOPROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-07-07
Authors: Fritz, G.
PDB entry 8ad6: Structure of DarB bound to c-di-AMP
Classification: SIGNALING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-07-07
Authors: Garcia-Pino, A., Talavera, A.
PDB entry 8ad7: Flavin-dependent tryptophan 6-halogenase Thal in complex with D-Trp
Classification: FLAVOPROTEIN
Source organism: Streptomyces albogriseolus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2022-07-08
Authors: Moritzer, A.C., Niemann, H.H.
PDB entry 8ad8: Flavin-dependent tryptophan 6-halogenase Thal in complex with a D-Trp-Ser dipeptide
Classification: FLAVOPROTEIN
Source organism: Streptomyces albogriseolus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2022-07-08
Authors: Gafe, S., Moritzer, A.C., Montua, N., Sewald, N., Niemann, H.H.
PDB entry 8ad9: Crystal structure of ClpC2 C-terminal domain
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2022-07-08
Authors: Taylor, G., Cui, H.J., Leodolter, J., Giese, C., Weber-Ban, E.
PDB entry 8ada: Crystal structure of ClpC2 N-terminal domain
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.996 Å
Deposited: 2022-07-08
Authors: Taylor, G., Cui, H.J., Leodolter, J., Giese, C., Weber-Ban, E.
PDB entry 8adb: Viral tegument-like DUBs
Classification: HYDROLASE
Source organism: Homo sapiens; Waddlia chondrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2022-07-08
Authors: Erven, I., Abraham, E.T., Hermanns, T., Baumann, U., Hofmann, K.
PDB entry 8adc: Viral tegument-like DUBs
Classification: HYDROLASE
Source organism: Waddlia chondrophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-08
Authors: Erven, I., Abraham, E.T., Hermanns, T., Baumann, U., Hofmann, K.
PDB entry 8add: Viral tegument-like DUBs
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-07-08
Authors: Erven, I., Abraham, E.T., Hermanns, T., Hofmann, K., Baumann, U.
PDB entry 8ade: Wild type ATTR amyloid fibril from senile systemic amyloidosis
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2022-07-08
Authors: Schmidt, M., Steinebrei, M.
PDB entry 8adf: X-ray crystal structure of PPAR gamma ligand binding domain in complex with CZ39
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2022-07-08
Authors: Capelli, D., Montanari, R., Pochetti, G., Meneghetti, F., Villa, S.
PDB entry 8adg: Cryo-EM structure of Darobactin 22 bound BAM complex
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-07-08
Authors: Yuan, B., Marlovits, T.C.
PDB entry 8adh: INTERDOMAIN MOTION IN LIVER ALCOHOL DEHYDROGENASE. STRUCTURAL AND ENERGETIC ANALYSIS OF THE HINGE BENDING MODE
Classification: OXIDOREDUCTASE(NAD(A)-CHOH(D))
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1989-04-20
Authors: Jones, T.A., Eklund, H.
PDB entry 8adi: Cryo-EM structure of Darobactin 9 bound BAM complex
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli; Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-07-08
Authors: Yuan, B., Marlovits, T.C.
PDB entry 8adj: Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster in complex with PARG inhibitor PDD00017272
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.508 Å
Deposited: 2022-07-08
Authors: Ariza, A., Fontana, P.
PDB entry 8adk: Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.474 Å
Deposited: 2022-07-08
Authors: Ariza, A., Fontana, P.
PDB entry 8adl: Cryo-EM structure of the SEA complex
Classification: SIGNALING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-07-08
Authors: Tafur, L., Loewith, R.
PDB entry 8adm: Ternary complex of 14-3-3 sigma, Usp8pS718 phosphopeptide and small molecule stabilizer
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-07-08
Authors: Centorrino, F., Ottmann, C.
PDB entry 8adn: Vairimorpha necatrix 20S proteasome from spores
Classification: HYDROLASE
Source organism: Vairimorpha necatrix
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-07-08
Authors: Jespersen, N., Ehrenbolger, K., Winiger, R., Svedberg, D., Vossbrinck, C.R., Barandun, J.
PDB entry 8adq: Crystal structure of holo-SwHPA-Mg (hydroxy ketone aldolase) from Sphingomonas wittichii RW1 in complex with hydroxypyruvate and D-Glyceraldehyde
Classification: LYASE
Source organism: Rhizorhabdus wittichii RW1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-07-11
Authors: Justo, I., Marsden, S.R., Hanefeld, U., Bento, I.
PDB entry 8adr: Crystal structure of a staphylococcal orthologue of CYP134A1 (CYPX) in complex with a fragment
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-07-11
Authors: Snee, M., Katariya, M., Levy, C.
PDB entry 8ads: Lipidic alpha-synuclein fibril - polymorph L2B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2022-07-11
Authors: Frieg, B., Antonschmidt, L., Dienemann, C., Geraets, J.A., Najbauer, E.E., Matthes, D., de Groot, B.L., Andreas, L.B., Becker, S., Griesinger, C., Schroeder, G.F.
PDB entry 8adt: Rational design of a calcium-independent trypsin variant
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-07-11
Authors: Simon, A.H., Liebscher, S., Kattner, A., Kattner, C., Bordusa, F.
PDB entry 8adu: Lipidic alpha-synuclein fibril - polymorph L1A
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2022-07-11
Authors: Frieg, B., Antonschmidt, L., Dienemann, C., Geraets, J.A., Najbauer, E.E., Matthes, D., de Groot, B.L., Andreas, L.B., Becker, S., Griesinger, C., Schroeder, G.F.
PDB entry 8adv: Lipidic alpha-synuclein fibril - polymorph L1B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2022-07-11
Authors: Frieg, B., Antonschmidt, L., Dienemann, C., Geraets, J.A., Najbauer, E.E., Matthes, D., de Groot, B.L., Andreas, L.B., Becker, S., Griesinger, C., Schroeder, G.F.
PDB entry 8adw: Lipidic alpha-synuclein fibril - polymorph L1C
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-07-11
Authors: Frieg, B., Antonschmidt, L., Dienemann, C., Geraets, J.A., Najbauer, E.E., Matthes, D., de Groot, B.L., Andreas, L.B., Becker, S., Griesinger, C., Schroeder, G.F.
PDB entry 8adx: Structure of the Reconstructed Ancestor of Phenolic Acid Decarboxylase AncPAD55
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-07-12
Authors: Schruefer, A., Mokos, D., Gruber, K., Daniel, B.
PDB entry 8ady: Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2022-07-12
Authors: Chen, Q., Rosenthal, P., Tolar, P.
PDB entry 8adz: Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.7 Å
Deposited: 2022-07-12
Authors: Chen, Q., Rosenthal, P., Tolar, P.
PDB entry 8ae0: Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2022-07-12
Authors: Chen, Q., Rosenthal, P., Tolar, P.
PDB entry 8ae1: Structure of trimeric SlpA outer membrane protein
Classification: STRUCTURAL PROTEIN
Source organism: Deinococcus radiodurans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-07-12
Authors: von Kuegelgen, A., Bharat, T.A.M.
PDB entry 8ae2: Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 5
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.5 Å
Deposited: 2022-07-12
Authors: Chen, Q., Rosenthal, P., Tolar, P.
PDB entry 8ae3: Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2022-07-12
Authors: Chen, Q., Rosenthal, P., Tolar, P.
PDB entry 8ae4: Crystal structure of human legumain in complex with Clitocypin 2
Classification: HYDROLASE
Source organism: Clitocybe nebularis; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-07-12
Authors: Elamin, T., Brandstetter, H., Dall, E.
PDB entry 8ae5: Crystal structure of human legumain in complex with macrocypin 1a
Classification: HYDROLASE
Source organism: Homo sapiens; Macrolepiota procera
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-07-12
Authors: Elamin, T., Brandstetter, H., Dall, E.