LiteFold/PDB huggingface dataset:
PDB entry 7f26: Crystal structure of lysozyme
Classification: PROTEIN BINDING
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-06-10
Authors: Liang, M.
PDB entry 7f27: Crystal structure of polyketide ketosynthase
Classification: LIGASE
Source organism: Acinetobacter baumannii (strain ACICU)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.806 Å
Deposited: 2021-06-10
Authors: Kim, Y., Lee, W.C.
PDB entry 7f28: Crystal structure of a bacterial ketosynthase
Classification: LIGASE
Source organism: Acinetobacter baumannii NCGM 237
Experimental method: X-RAY DIFFRACTION
Resolution: 1.877 Å
Deposited: 2021-06-10
Authors: Lee, W.C., Kim, Y.
PDB entry 7f29: Cryo-EM structure of the fibril formed by disaccharide-modified amyloid-beta(1-42)
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-06-10
Authors: Xia, W.C., Sun, Y.P., Liu, C.
PDB entry 7f2a: Crystal structure of Neisseria meningitidis EarP bound TDP
Classification: TRANSFERASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2021-06-10
Authors: Yoo, Y.
PDB entry 7f2b: Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal RNA binding domain at 2.0A resolution
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-06-10
Authors: Liu, C., Chen, Y.W.
PDB entry 7f2d: Arabidopsis thaliana protease-associated domain of vacuolar-sorting receptor 1 in complex with cruciferin 1 C-terminal pentapeptide RVAAA (pH9)
Classification: PROTEIN TRANSPORT
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2021-06-10
Authors: Lui, S.N., Wong, K.B.
PDB entry 7f2e: SARS-CoV-2 nucleocapsid protein C-terminal domain (dodecamer)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-06-10
Authors: Liu, C., Jiang, H.
PDB entry 7f2f: The complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae.
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-06-10
Authors: Gui, W.
PDB entry 7f2g: Crystal structure of the sensor domain of VbrK from Vibrio rotiferianus (crystal type 1)
Classification: SIGNALING PROTEIN
Source organism: Vibrio rotiferianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-06-11
Authors: Cho, S.Y., Yoon, S.I.
PDB entry 7f2h: Crystal structure of the sensor domain of VbrK from Vibrio rotiferianus (crystal type 2)
Classification: SIGNALING PROTEIN
Source organism: Vibrio rotiferianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-06-11
Authors: Cho, S.Y., Yoon, S.I.
PDB entry 7f2i: Arabidopsis thaliana protease-associated domain of vacuolar-sorting receptor 1 in complex with cruciferin 1 C-terminal pentapeptide RVAAA (pH6.5)
Classification: PROTEIN TRANSPORT
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-06-11
Authors: Lui, S.N., Wong, K.B.
PDB entry 7f2j: Crystal structure of AtFKBP53 FKBD in complex with rapamycin
Classification: ISOMERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-06-11
Authors: Singh, A.K., Saharan, K., Vasudevan, D.
PDB entry 7f2k: Crystal structure of PDE4D catalytic domain complexed with compound 17a
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.10002 Å
Deposited: 2021-06-11
Authors: Huang, Y.-Y., He, X., Luo, H.-B.
PDB entry 7f2l: Crystal structure of PDE4D catalytic domain complexed with compound 18a
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.10111 Å
Deposited: 2021-06-11
Authors: Huang, Y.-Y., He, X., Luo, H.-B.
PDB entry 7f2m: Crystal structure of PDE4D catalytic domain complexed with compound 18d
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.20004 Å
Deposited: 2021-06-11
Authors: Huang, Y.-Y., He, X., Luo, H.-B.
PDB entry 7f2n: Crystal structure of SSB from Klebsiella pneumonia.
Classification: DNA BINDING PROTEIN
Source organism: Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-06-11
Authors: Lin, E.S., Huang, Y.H., Huang, C.Y.
PDB entry 7f2o: Cryo-EM structure of the type 2 bradykinin receptor in complex with the bradykinin and an Gq protein
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-06-11
Authors: Yin, Y., Jiang, Y.
PDB entry 7f2p: The head structure of Helicobacter pylori bacteriophage KHP40
Classification: VIRUS
Source organism: Helicobacter phage KHP40
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-06-13
Authors: Kamiya, R., Uchiyama, J., Matsuzaki, S., Murata, K., Iwasaki, K., Miyazaki, N.
PDB entry 7f2r: Crystal structure of VinK-VinL covalent complex formed with a pantetheineamide cross-linking probe
Classification: TRANSFERASE
Source organism: Streptomyces halstedii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-06-14
Authors: Miyanaga, A., Ouchi, R., Kudo, F., Eguchi, T.
PDB entry 7f2s: Crystal structure of anti S-gatifloxacin antibody Fab fragment apo form
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2021-06-14
Authors: Wang, L.T., Jiao, W.Y., Shen, X., Lei, H.T.
PDB entry 7f2u: FmnB complexed with ADP
Classification: TRANSFERASE
Source organism: Listeria monocytogenes serotype 1/2a (strain 10403S)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.984 Å
Deposited: 2021-06-14
Authors: Cheng, W., Zheng, Y.H.
PDB entry 7f2v: Urate oxidase from Thermobispora bispora in apo form
Classification: OXIDOREDUCTASE
Source organism: Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-06-14
Authors: Chiu, Y.C., Hsu, T.S., Huang, C.Y., Hsu, C.H.
PDB entry 7f2w: TbUox in complex with uric acid
Classification: OXIDOREDUCTASE
Source organism: Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2021-06-14
Authors: Chiu, Y.C., Hsu, T.S., Huang, C.Y., Hsu, C.H.
PDB entry 7f2x: Crystal structure of MEK1 C121S mutant
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.007 Å
Deposited: 2021-06-15
Authors: Fujioka, Y., Noda, N.N.
PDB entry 7f2y: Crystal structure of OxdB E85A mutant (form I)
Classification: LYASE
Source organism: Bacillus sp. (strain OxB-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-06-15
Authors: Muraki, N., Matsui, D., Asano, Y., Aono, S.
PDB entry 7f2z: Crystal structure of OxdB E85A mutant (form II)
Classification: LYASE
Source organism: Bacillus sp. (strain OxB-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-06-15
Authors: Muraki, N., Matsui, D., Asano, Y., Aono, S.
PDB entry 7f30: Crystal structure of OxdB E85A in complex with Z-2- (3-bromophenyl) propanal oxime
Classification: LYASE
Source organism: Bacillus sp. (strain OxB-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-06-15
Authors: Muraki, N., Matsui, D., Asano, Y., Aono, S.
PDB entry 7f32: Ny-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases
Classification: METAL BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2021-06-15
Authors: Xia, Y., Liu, C.F.
PDB entry 7f35: Crystal structure of anti S-gatifloxacin antibody Fab fragment in complex with S-gatifloxacin
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-06-15
Authors: Wang, L.T., Jiao, W.Y., Shen, X., Lei, H.T.
PDB entry 7f36: TacT complexed with acetyl-glycyl-tRNAGly
Classification: TRANSFERASE
Source organism: Escherichia coli; Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.098 Å
Deposited: 2021-06-15
Authors: Yashiro, Y., Tomita, K.
PDB entry 7f37: Crystal structure of AtaT2-AtaR2 complex
Classification: TRANSFERASE
Source organism: Escherichia coli O157:H7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.896 Å
Deposited: 2021-06-15
Authors: Yashiro, Y., Tomita, K.
PDB entry 7f38: Cyanophage A-1(L) capsid asymmetric unit
Classification: VIRUS
Source organism: Nostoc phage A1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2021-06-15
Authors: Cui, N., Li, Q., Zhou, C.Z.
PDB entry 7f39: The structure of flavin transferase FmnB
Classification: TRANSFERASE
Source organism: Listeria monocytogenes serotype 1/2a (strain 10403S)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.888 Å
Deposited: 2021-06-15
Authors: Cheng, W., Zheng, Y.H.
PDB entry 7f3a: Arabidopsis thaliana GH1 beta-glucosidase AtBGlu42
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-06-16
Authors: Horikoshi, S., Saburi, W., Yu, J., Yao, M.
PDB entry 7f3b: cocrystallization of Escherichia coli dihydrofolate reductase (DHFR) and its pyrrolo[3,2-f]quinazoline inhibitor.
Classification: ANTIBIOTIC
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2021-06-16
Authors: Wang, H., You, X.F., Yang, X.Y., Li, Y., Hong, W.
PDB entry 7f3e: Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus
Classification: RNA BINDING PROTEIN
Source organism: Aquifex aeolicus (strain VF5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2021-06-16
Authors: Teramoto, T., Koyasu, T., Adachi, N., Kawasaki, M., Moriya, T., Numata, T., Senda, T., Kakuta, Y.
PDB entry 7f3f: CryoEM structure of human Kv4.2-KChIP1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-06-16
Authors: Kise, Y., Nureki, O.
PDB entry 7f3g: Crystal structure of DCLK1 kinase domain in complex with ruxolitinib
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-06-16
Authors: Lim, H.J., Jang, D.M., Kim, H.S.
PDB entry 7f3h: Crystal structure of cytochrome P450DA heme domain
Classification: OXIDOREDUCTASE
Source organism: Deinococcus aerius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-06-16
Authors: Wan, N.W.
PDB entry 7f3i: Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-06-16
Authors: Zhang, Y., Huang, Y.
PDB entry 7f3j: Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-06-16
Authors: Zhang, Y., Huang, Y.
PDB entry 7f3k: Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2021-06-16
Authors: Zhang, Y., Huang, Y.
PDB entry 7f3l: Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-06-16
Authors: Zhang, Y., Huang, Y.
PDB entry 7f3m: Crystal structure of FGFR4 kinase domain with PRN1371
Classification: TRANSFERASE-TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.289 Å
Deposited: 2021-06-16
Authors: Chen, X.J., Qu, L.Z., Dai, S.Y., Wei, H.D., Chen, Y.H.
PDB entry 7f3n: Structure of PopP2 in apo form
Classification: TRANSFERASE
Source organism: Ralstonia solanacearum (strain GMI1000)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35186 Å
Deposited: 2021-06-16
Authors: Xia, Y., Zhang, Z.M.
PDB entry 7f3o: Crystal structure of the GluA2o LBD in complex with glutamate and TAK-653
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2021-06-16
Authors: Sogabe, S., Igaki, S., Hirokawa, A., Zama, Y., Lane, W., Snell, G.
PDB entry 7f3p: Crystal structure of a nadp-dependent alcohol dehydrogenase mutant in apo form
Classification: OXIDOREDUCTASE
Source organism: Thermoanaerobacter brockii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-06-16
Authors: Han, X., Bi, Y., Wei, H.L., Gao, J., Li, Q., Qu, G., Sun, Z.T., Liu, W.D.
PDB entry 7f3q: SARS-CoV-2 RBD in complex with A5-10 Fab and A34-2 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-06-16
Authors: Dou, Y., Wang, X., Liu, P., Lu, B., Wang, K.
PDB entry 7f3s: Crystal structure of Sth1 Bromodomain in complex with H3K14bz peptide
Classification: NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-06-17
Authors: Wang, D., Yan, F., Chen, Y.
PDB entry 7f3t: Cryo-EM structure of human TMEM120A in the CoASH-bound state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2021-06-17
Authors: Song, D.F., Rong, Y., Liu, Z.F.
PDB entry 7f3u: Cryo-EM structure of human TMEM120A in the CoASH-free state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-06-17
Authors: Rong, Y., Gao, Y.W., Song, D.F., Zhao, Y., Liu, Z.F.
PDB entry 7f3v: Crystal structure of YfiH with C107A mutation in complex with endogenous UDP-MurNAc
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2021-06-17
Authors: Lee, M.S., Hsieh, K.Y., Chang, C.I.
PDB entry 7f3w: Crystal structure of cytochrome P450DA mutant (N190F/V356L/A486E) heme domain
Classification: OXIDOREDUCTASE
Source organism: Deinococcus apachensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2021-06-17
Authors: Wan, N.W.
PDB entry 7f3x: Lysophospholipid acyltransferase LPCAT3 in complex with lysophosphatidylcholine
Classification: TRANSFERASE
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2021-06-17
Authors: Zhang, Q., Yao, D., Rao, B., Li, S., Jian, L., Chen, Y., Hu, K., Xia, Y., Shen, Y., Cao, Y.
PDB entry 7f3y: Wild-type Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with methotrexate (MTX), NADPH and dUMP
Classification: STRUCTURAL PROTEIN
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.252 Å
Deposited: 2021-06-17
Authors: Vanichtanankul, J., Tanramluk, D., Yuvaniyama, J., Yuthavong, Y.
PDB entry 7f3z: Double mutant Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS-K1, C59R+S108N) complexed with Trimethoprim (TOP), NADPH and dUMP
Classification: STRUCTURAL PROTEIN
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-06-17
Authors: Vanichtanankul, J., Tanramluk, D., Chitnumsub, P., Yuvaniyama, J., Yuthavong, Y.
PDB entry 7f40: Lysophospholipid acyltransferase LPCAT3 in a complex with Arachidonoyl-CoA
Classification: TRANSFERASE
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2021-06-17
Authors: Zhang, Q., Yao, D., Rao, B., Li, S., Jian, L., Chen, Y., Hu, K., Xia, Y., Shen, Y., Cao, Y.
PDB entry 7f41: PARP15 catalytic domain in complex with 3-AMINOBENZAMIDE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39721 Å
Deposited: 2021-06-17
Authors: Zhou, X.L., Zhong, F.L., Li, J., Zhang, J.
PDB entry 7f42: PARP15 catalytic domain in complex with Iniparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2021-06-17
Authors: Zhou, X.L., Zhou, H., Li, J., Zhang, J.
PDB entry 7f43: PARP15 catalytic domain in complex with Niraparib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2021-06-17
Authors: Zhou, X.L., Zhou, H., Li, J., Zhang, J.
PDB entry 7f44: Crystal structure of Moraxella catarrhalis enoyl-ACP-reductase (FabI) in complex with the cofactor NAD
Classification: OXIDOREDUCTASE
Source organism: Moraxella catarrhalis (strain BBH18)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2021-06-17
Authors: Katiki, M., Neetu, N., Pratap, S., Kumar, P.
PDB entry 7f45: Structure of an Anti-CRISPR protein
Classification: IMMUNE SYSTEM
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2021-06-17
Authors: Feng, Y.
PDB entry 7f46: Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab (state1, local refinement of the RBD, NTD and 35B5 Fab)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.79 Å
Deposited: 2021-06-17
Authors: Wang, X.F., Zhu, Y.Q.
PDB entry 7f47: Cryo-EM structure of Rhizobium etli MprF
Classification: MEMBRANE PROTEIN
Source organism: Rhizobium etli (strain CFN 42 / ATCC 51251)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2021-06-17
Authors: Nishimura, M., Hirano, H., Kobayashi, K., Gill, C.P., Phan, C.N.K., Kise, Y., Kusakizako, T., Yamashita, K., Ito, Y., Roy, H., Nishizawa, T., Nureki, O.
PDB entry 7f49: von Willebrand factor (VWF) A1 domain with BT-100 aptamer RNA
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-06-18
Authors: Zhu, S.
PDB entry 7f4a: Crystal structure of Taf14 YEATS domain in complex with H3K9bz peptide
Classification: NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-06-18
Authors: Wang, D., Yan, F., Yong, C.
PDB entry 7f4b: The crystal structure of the immature apo-enzyme of homoserine dehydrogenase from the hyperthermophilic archaeon Sulfurisphaera tokodaii.
Classification: OXIDOREDUCTASE
Source organism: Sulfurisphaera tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-06-18
Authors: Kurihara, E., Kubota, T., Watanabe, K., Ogata, K., Kaneko, R., Oshima, T., Yoshimune, K., Goto, M.
PDB entry 7f4c: The crystal structure of the immature holo-enzyme of homoserine dehydrogenase complexed with NADP and 1,4-butandiol from the hyperthermophilic archaeon Sulfurisphaera tokodaii.
Classification: OXIDOREDUCTASE
Source organism: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-06-18
Authors: Ogata, K., Kaneko, R., Kubota, T., Watanabe, K., Kurihara, E., Oshima, T., Yoshimune, K., Goto, M.
PDB entry 7f4d: Cryo-EM structure of alpha-MSH-bound melanocortin-1 receptor in complex with Gs protein and Nb35
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-06-18
Authors: Ma, S., Chen, Y., Dai, A., Yin, W., Guo, J., Yang, D., Zhou, F., Jiang, Y., Wang, M.-W., Xu, H.E.
PDB entry 7f4e: Crystal structure of Hst2 in complex with H3K9bz peptide
Classification: NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-06-18
Authors: Wang, D., Yan, F., Chen, Y.
PDB entry 7f4f: Cryo-EM structure of afamelanotide-bound melanocortin-1 receptor in complex with Gs protein and scFv16
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-06-18
Authors: Ma, S., Chen, Y., Dai, A., Yin, W., Guo, J., Yang, D., Zhou, F., Jiang, Y., Wang, M.-W., Xu, H.E.
PDB entry 7f4g: Structure of RPAP2-bound RNA polymerase II
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2021-06-18
Authors: Chen, X., Qi, Y., Wang, X., Li, J., Zhao, D., Xu, Y.
PDB entry 7f4h: Cryo-EM structure of afamelanotide-bound melanocortin-1 receptor in complex with Gs protein, Nb35 and scFv16
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-06-18
Authors: Ma, S., Chen, Y., Dai, A., Yin, W., Guo, J., Yang, D., Zhou, F., Jiang, Y., Wang, M.-W., Xu, H.E.
PDB entry 7f4i: Cryo-EM structure of SHU9119-bound melanocortin-1 receptor in complex with Gs protein and Nb35
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-06-18
Authors: Ma, S., Chen, Y., Dai, A., Yin, W., Guo, J., Yang, D., Zhou, F., Jiang, Y., Wang, M.-W., Xu, H.E.
PDB entry 7f4l: Crystal structure of MTA1-p1-p2 complex
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4m: Crystal structure of SAM-bound MTA1-p1-p2 complex
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 3.58 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4n: Crystal structure of SAH-bound MTA1-p1-p2 complex
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4o: Crystal structure of MTA1-p2 complex
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4p: Crystal structure of SAM-bound MTA1-p2 complex
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4q: Crystal structure of SAH-bound MTA1-p2 complex
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 3.42 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4r: Crystal structure of MTA1
Classification: DNA BINDING PROTEIN
Source organism: Tetrahymena thermophila (strain SB210)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4s: Crystal structure of TthMTA1-PteMTA9 complex
Classification: DNA BINDING PROTEIN
Source organism: Paramecium tetraurelia strain d4-2; Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4t: Crystal structure of SAM-bound TthMTA1-Ptep2 complex
Classification: DNA BINDING PROTEIN
Source organism: Paramecium tetraurelia strain d4-2; Tetrahymena thermophila SB210
Experimental method: X-RAY DIFFRACTION
Resolution: 3.68 Å
Deposited: 2021-06-21
Authors: Chen, J., Liu, L.
PDB entry 7f4u: Cryo-EM structure of TELO2-TTI1-TTI2 complex
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-06-21
Authors: Cho, Y., Kim, Y.
PDB entry 7f4v: Cryo-EM structure of a primordial cyanobacterial photosystem I
Classification: PHOTOSYNTHESIS
Source organism: Gloeobacter violaceus (strain ATCC 29082 / PCC 7421)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2021-06-21
Authors: Kato, K., Hamaguchi, T., Nagao, R., Kawakami, K., Yonekura, K., Shen, J.R.
PDB entry 7f4w: Complex structure of HLA2402 with recognizing SARS-CoV-2 epitope pep4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-06-21
Authors: Deng, S., Jin, T.
PDB entry 7f4x: Joint neutron and X-ray crystal structure of the nucleotide-binding domain of Hsp72 in complex with ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2021-06-21
Authors: Yokoyama, T., Ostermann, A., Schrader, T.E.
PDB entry 7f4y: Crystal structure of replisomal dimer of DNA polymerase from bacteriophage RB69 with DNA duplexes
Classification: TRANSFERASE/DNA
Source organism: Enterobacteria phage RB69; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-06-21
Authors: Youn, H.-S., Park, J., An, J.Y., Lee, Y., Eom, S.H., Wang, J.
PDB entry 7f4z: X-ray crystal structure of Y149A mutated Hsp72-NBD in complex with ADP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-06-21
Authors: Yokoyama, T., Fujii, S., Nabeshima, Y., Mizuguchi, M.
PDB entry 7f50: X-ray crystal structure of Y149A mutated Hsp72-NBD in complex with AMPPnP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.703 Å
Deposited: 2021-06-21
Authors: Yokoyama, T., Fujii, S., Nabeshima, Y., Mizuguchi, M.
PDB entry 7f51: Crystal structure of Hst2 in complex with 2'-O-Benzoyl ADP Ribose
Classification: NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2021-06-21
Authors: Wang, D., Yan, F., Chen, Y.
PDB entry 7f52: Crystal Structure of IBV Nsp2
Classification: VIRAL PROTEIN
Source organism: Infectious bronchitis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.559 Å
Deposited: 2021-06-21
Authors: Ming, Z., Li, Y., Yan, L., Lou, Z., Rao, Z.
PDB entry 7f53: Cryo-EM structure of a-MSH-MC4R-Gs_Nb35 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-06-21
Authors: Zhang, H., Chen, L., Mao, C., Shen, Q., Yang, D., Shen, D., Qin, J.
PDB entry 7f54: Cryo-EM structure of afamelanotide-MC4R-Gs_Nb35 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-06-21
Authors: Zhang, H., Chen, L., Mao, C., Shen, Q., Yang, D., Shen, D., Qin, J.
PDB entry 7f55: Cryo-EM structure of bremelanotide-MC4R-Gs_Nb35 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-06-21
Authors: Zhang, H., Chen, L., Mao, C., Shen, Q., Yang, D., Shen, D., Qin, J.
PDB entry 7f56: DNQX-bound GluK2-1xNeto2 complex, with asymmetric LBD
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-06-21
Authors: He, L.L., Gao, Y.W., Li, B., Zhao, Y.
PDB entry 7f57: Kainate-bound GluK2-1xNeto2 complex, at the desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-06-21
Authors: He, L.L., Gao, Y.W., Li, B., Zhao, Y.
PDB entry 7f58: Cryo-EM structure of THIQ-MC4R-Gs_Nb35 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-06-21
Authors: Zhang, H., Chen, L., Mao, C., Shen, Q., Yang, D., Shen, D., Qin, J.
PDB entry 7f59: DNQX-bound GluK2-1xNeto2 complex
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-06-21
Authors: He, L.L., Gao, Y.W., Li, B., Zhao, Y.
PDB entry 7f5a: DNQX-bound GluK2-2xNeto2 complex
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2021-06-21
Authors: He, L.L., Gao, Y.W., Li, B., Zhao, Y.
PDB entry 7f5b: LBD-TMD focused reconstruction of DNQX-bound GluK2-1xNeto2 complex
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-06-21
Authors: He, L.L., Gao, Y.W., Li, B., Zhao, Y.
PDB entry 7f5c: Crystal structure of BPTF-BRD with ligand DC-BPi-07 bound
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65004 Å
Deposited: 2021-06-21
Authors: Lu, T., Lu, H.B., Wang, J., Lin, H., Lu, W., Luo, C.
PDB entry 7f5d: Crystal structure of BPTF-BRD with ligand DC-BPi-03 bound
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57151 Å
Deposited: 2021-06-21
Authors: Lu, T., Lu, H.B., Wang, J., Lin, H., Lu, W., Luo, C.
PDB entry 7f5e: Crystal structure of BPTF-BRD with ligand DC-BPi-11 bound
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.20017 Å
Deposited: 2021-06-21
Authors: Lu, T., Lu, H.B., Wang, J., Lin, H., Lu, W., Luo, C.
PDB entry 7f5f: SARS-CoV-2 ORF8 S84
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2021-06-22
Authors: Chen, S., Zhou, Z., Chen, X.
PDB entry 7f5g: The crystal structure of RBD-Nanobody complex, DL4 (SA4)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-06-22
Authors: Li, T., Lai, Y., Zhou, Y., Tan, J., Li, D.
PDB entry 7f5h: The crystal structure of RBD-Nanobody complex, DL28 (SC4)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-06-22
Authors: Luo, Z.P., Li, T., Lai, Y., Zhou, Y., Tan, J., Li, D.
PDB entry 7f5i: X-ray structure of Clostridium perfringens-specific amidase endolysin
Classification: HYDROLASE
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-06-22
Authors: Kamitori, S., Tamai, E.
PDB entry 7f5j: The crystal structure of VyPAL2-I244V, a more efficient mutant of VyPAL2 peptide asparaginyl ligase in its active enzyme form
Classification: PLANT PROTEIN
Source organism: Viola philippica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.593 Å
Deposited: 2021-06-22
Authors: Hu, S., Sahili, A., Lescar, J.
PDB entry 7f5k: Crystal structure of TCR4-1 ectodomain
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.00003 Å
Deposited: 2021-06-22
Authors: Nagae, M., Yamasaki, S.
PDB entry 7f5m: Crystal structure of Sas5 YEATS domain in complex with H3K27bz peptide
Classification: NUCLEAR PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-06-22
Authors: Wang, D., Yan, F., Chen, Y.
PDB entry 7f5n: Crystal structure of TCPTP catalytic domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-06-22
Authors: Singh, J.P., Lin, M.-J., Hsu, S.-F., Lee, C.-C., Meng, T.-C.
PDB entry 7f5o: Crystal structure of PTPN2 catalytic domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-06-22
Authors: Singh, J.P., Lin, M.-J., Hsu, S.-F., Lee, C.-C., Meng, T.-C.
PDB entry 7f5p: The crystal structure of VyPAL2-C214A, a dead mutant of VyPAL2 peptide asparaginyl ligase in form I
Classification: PLANT PROTEIN
Source organism: Viola philippica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-06-22
Authors: Hu, S., Sahili, A., Lescar, J.
PDB entry 7f5q: The crystal structure of VyPAL2 peptide asparaginyl ligase in its active enzyme form
Classification: PLANT PROTEIN
Source organism: Viola philippica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-06-22
Authors: Hu, S., Sahili, A., Lescar, J.
PDB entry 7f5r: Crystal structure of SARS-CoV-2 Y453F-RBD bound to mink ACE2
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Neovison vison; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2021-06-22
Authors: Wang, X.Q., Ding, Q., Lan, J., Ren, W.L.
PDB entry 7f5s: human delta-METTL18 60S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2021-06-22
Authors: Takahashi, M., Kashiwagi, K., Ito, T.
PDB entry 7f5t: Drosophila P5CS filament with glutamate
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-06-22
Authors: Liu, J.L., Zhong, J., Guo, C.J., Zhou, X.
PDB entry 7f5u: Drosophila P5CS filament with glutamate and ATPgammaS
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-06-22
Authors: Liu, J.L., Zhong, J., Guo, C.J., Zhou, X.
PDB entry 7f5v: Drosophila P5CS filament with glutamate, ATP, and NADPH
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-06-22
Authors: Liu, J.L., Zhong, J., Guo, C.J., Zhou, X.
PDB entry 7f5w: Conserved and divergent strigolactone signaling in Saccharum spontaneum
Classification: PLANT PROTEIN
Source organism: Saccharum hybrid cultivar ROC22
Experimental method: X-RAY DIFFRACTION
Resolution: 1.654 Å
Deposited: 2021-06-23
Authors: Zhao, Q.Q., Ming, Z.H.
PDB entry 7f5x: GK domain of Drosophila P5CS filament with glutamate
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-06-23
Authors: Liu, J.L., Zhong, J., Guo, C.J., Zhou, X.
PDB entry 7f5y: Crystal structure of the single-stranded dna-binding protein from Mycobacterium tuberculosis- Form III
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2021-06-23
Authors: Srikalaivani, R., Paul, A., Sriram, R., Narayanan, S., Gopal, B., Vijayan, M.
PDB entry 7f5z: Crystal structure of the single-stranded dna-binding protein from Mycobacterium tuberculosis- Form III
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-06-23
Authors: Srikalaivani, R., Paul, A., Sriram, R., Narayanan, S., Gopal, B., Vijayan, M.
PDB entry 7f60: Crystal structure of auxiliary protein in complex with human nuclear protein
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-06-23
Authors: Gao, X., Cui, S.
PDB entry 7f61: Crystal structure of human histamine receptor H3R in complex with antagonist PF03654746
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-06-23
Authors: Peng, X., Zhang, H.
PDB entry 7f62: Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody chAb-25 (Focused refinement of S-RBD and chAb-25 region)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-06-24
Authors: Yang, T.J., Yu, P.Y., Wu, H.C., Hsu, S.T.D.
PDB entry 7f63: Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody chAb-45 (Focused refinement of S-RBD and chAb-45 region)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-06-24
Authors: Yang, T.J., Yu, P.Y., Wu, H.C., Hsu, S.T.D.
PDB entry 7f64: eIF2B-SFSV NSs
Classification: TRANSLATION
Source organism: Homo sapiens; Sandfly fever sicilian virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2021-06-24
Authors: Kashiwagi, K., Ito, T.
PDB entry 7f65: Bacetrial Cocaine Esterase with mutations T172R/G173Q/V116K/S117A/A51L, bound to benzoic acid
Classification: HYDROLASE
Source organism: Rhodococcus sp. MB1 'Bresler 1999'
Experimental method: X-RAY DIFFRACTION
Resolution: 2.202 Å
Deposited: 2021-06-24
Authors: Ouyang, P.F., Zhang, Y., Tong, J.
PDB entry 7f66: eIF2B-SFSV NSs-1-eIF2
Classification: TRANSLATION
Source organism: Homo sapiens; Sandfly fever sicilian virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2021-06-24
Authors: Kashiwagi, K., Ito, T.
PDB entry 7f67: eIF2B-SFSV NSs-2-eIF2
Classification: TRANSLATION
Source organism: Homo sapiens; Sandfly fever sicilian virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2021-06-24
Authors: Kashiwagi, K., Ito, T.
PDB entry 7f68: Crystal structure of N-ras S89D
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2021-06-24
Authors: Li, Y., Sun, Q.
PDB entry 7f69: Crystal structure of WIPI2b in complex with ATG16L1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-06-24
Authors: Gong, X.Y., Pan, L.F.
PDB entry 7f6d: Reconstruction of the HerA-NurA complex from Deinococcus radiodurans
Classification: HYDROLASE
Source organism: Deinococcus radiodurans R1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2021-06-25
Authors: Xu, Y., Xu, L., Guo, J., Hua, Y., Zhao, Y.
PDB entry 7f6e: Crystal structure of metal-citrate-binding protein (MctA) of ABC transporter endogenously bound to Mg2+-citrate complex (Form I)
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K., Gogoi, P.
PDB entry 7f6f: Crystal structure of metal-citrate-binding protein (MctA) of ABC transporter endogenously bound to Mg2+-citrate complex (Form II)
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K., Gogoi, P.
PDB entry 7f6g: Cryo-EM structure of human angiotensin receptor AT1R in complex Gq proteins and Sar1-AngII
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-06-25
Authors: Zhang, D., Xu, L., Zhan, Y., Guo, J., Zhang, H.
PDB entry 7f6h: Cryo-EM structure of human bradykinin receptor BK2R in complex Gq proteins and bradykinin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-06-25
Authors: Shen, J., Zhang, D., Fu, Y., Chen, A., Zhang, H.
PDB entry 7f6i: Cryo-EM structure of human bradykinin receptor BK2R in complex Gq proteins and kallidin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-06-25
Authors: Shen, J., Zhang, D., Fu, Y., Chen, A., Zhang, H.
PDB entry 7f6j: Crystal structure of the PDZD8 coiled-coil domain - Rab7 complex
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-06-25
Authors: Khan, H., Chen, L., Tan, L., Im, Y.J.
PDB entry 7f6k: Crystal structure of metal-citrate-binding protein (MctA) of ABC transporter endogenously bound to citrate
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K., Gogoi, P.
PDB entry 7f6l: Crystal structure of human MUS81-EME2 complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-06-25
Authors: Hua, Z.K., Zhang, D.P., Yuan, C., Lin, Z.H.
PDB entry 7f6m: Crystal structure of APC complexed with a peptide inhibitor MAI-516
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-06-25
Authors: Song, K., Zhang, J.
PDB entry 7f6n: Crystal structure of metal-citrate-binding mutant (S26A) protein (MctA) of ABC transporter endogenously bound to Mg2+-citrate complex
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K.
PDB entry 7f6o: Crystal structure of metal-citrate-binding mutant (S26A) protein (MctA) of ABC transporter endogenously bound to Mn2+-citrate complex
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K.
PDB entry 7f6p: Crystal structure of metal-citrate-binding mutant (D28A) protein (MctA) of ABC transporter endogenously bound to citrate
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K.
PDB entry 7f6q: Crystal structure of metal-citrate-binding mutant (S79A) protein (MctA) of ABC transporter in apo state
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K.
PDB entry 7f6r: Crystal structure of metal-citrate-binding mutant (S164A) protein (MctA) of ABC transporter in apo state
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K.
PDB entry 7f6s: Crystal structure of metal-citrate-binding mutant (T199A) protein (MctA) of ABC transporter in apo state
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K.
PDB entry 7f6t: Crystal structure of metal-citrate-binding mutant (Y221F) protein (MctA) of ABC transporter in apo state
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K.
PDB entry 7f6u: Crystal structure of metal-citrate-binding mutant (Y221A) protein (MctA) of ABC transporter in apo state
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-06-25
Authors: Kanaujia, S.P., Mandal, S.K.
PDB entry 7f6v: Cryo-EM structure of the human TACAN channel in a closed state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2021-06-25
Authors: Chen, X.Z., Wang, Y.J., Li, Y., Yang, X., Shen, Y.Q.
PDB entry 7f6w: Crystal structure of Saccharomyces cerevisiae lysyl-tRNA Synthetase
Classification: LIGASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.607 Å
Deposited: 2021-06-26
Authors: Wu, S., Li, P., Hei, Z., Zheng, L., Wang, J., Fang, P.
PDB entry 7f6x: Structural and mechanistic studies of a novel non-heme iron epimerase/lyase and its utilization in chemoselective synthesis.
Classification: ISOMERASE
Source organism: Streptomyces albus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2021-06-26
Authors: Li, T.L., Li, Y.S., Chen, M.H.
PDB entry 7f6y: Complex Structure of antibody BD-503 and RBD-E484K of COVID-19
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-06-26
Authors: Xu, H., Wang, B., Zhao, T.N., Su, X.D.
PDB entry 7f6z: Complex Structure of antibody BD-503 and RBD-501Y.V2 of COVID-19
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-06-26
Authors: Xu, H., Wang, B., Zhao, T.N., Su, X.D.
PDB entry 7f70: Crystal structure of Rv3094c
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2021-06-26
Authors: Wang, Z.X., Ouyang, S.Y., Zhang, H.T.
PDB entry 7f71: Crystal structure of the Mycobacterium tuberculosis L,D-transpeptidase-2 (LdtMt2) with peptidoglycan sugar moiety and glutamate
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2021-06-26
Authors: Kumar, P., Lamichhane, G.
PDB entry 7f72: Rv3094c in complex with FAD and ETH.
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2021-06-27
Authors: Wang, Z.X., Ouyang, S.Y.
PDB entry 7f73: Cryo-EM structure of human TMEM120B
Classification: MEMBRANE PROTEIN
Source organism: Anaplasma marginale; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-06-27
Authors: Ke, M., Wu, J., Yan, Z.
PDB entry 7f74: Rv3094c in complex with FMN.
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-06-27
Authors: Wang, Z.X., Ouyang, S.Y.