LiteFold/PDB huggingface dataset:
PDB entry 8cvj: Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
Classification: RIBOSOME/RNA
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-05-18
Authors: Syroegin, E.A., Aleksandrova, E.V., Polikanov, Y.S.
PDB entry 8cvk: Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Classification: Ribosome/RNA
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-05-18
Authors: Syroegin, E.A., Aleksandrova, E.V., Polikanov, Y.S.
PDB entry 8cvl: Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Classification: Ribosome/RNA
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-05-18
Authors: Syroegin, E.A., Aleksandrova, E.V., Polikanov, Y.S.
PDB entry 8cvm: Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
Classification: ANTIBIOTIC
Source organism: Cutibacterium acnes; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2022-05-18
Authors: Lomakin, I.B., Devarkar, S.C., Bunick, C.G.
PDB entry 8cvn: Cryo-EM Structure of Human 15-PGDH in Complex with Small Molecule SW209415
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2022-05-18
Authors: Huang, W., Taylor, D.J.
PDB entry 8cvo: Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
Classification: ANTIBIOTIC
Source organism: Cutibacterium acnes
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-05-18
Authors: Lomakin, I.B., Devarkar, S.C., Bunick, C.G.
PDB entry 8cvp: Cereblon-DDB1 in the Apo form
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-05-18
Authors: Watson, E.R., Lander, G.C.
PDB entry 8cvq: Crystal structure of TDP1 complexed with compound XZ761
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-05-18
Authors: Lountos, G.T., Zhao, X.Z., Wang, W., Kiselev, E., Tropea, J.E., Needle, D., Pommier, Y., Burke, T.R.
PDB entry 8cvr: Human 20S proteasome with MG-132
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-05-18
Authors: Zhao, J.
PDB entry 8cvs: Human PA200-20S proteasome with MG-132
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-05-18
Authors: Zhao, J.
PDB entry 8cvt: Human 19S-20S proteasome, state SD2
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-05-18
Authors: Zhao, J.
PDB entry 8cvu: 20ns Temperature-Jump (Light) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cvv: 20ns Temperature-Jump (Dark1) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cvw: 20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cvx: Human glycogenin-1 and glycogen synthase-1 complex in the presence of glucose-6-phosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-05-18
Authors: Liu, Y., Fastman, N.M., Tzitzilonis, C.
PDB entry 8cvy: Human glycogenin-1 and glycogen synthase-1 complex in the apo mobile state
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-05-18
Authors: Liu, Y., Fastman, N.M., Tzitzilonis, C.
PDB entry 8cvz: Human glycogenin-1 and glycogen synthase-1 complex in the apo ordered state
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-05-18
Authors: Liu, Y., Fastman, N.M., Tzitzilonis, C.
PDB entry 8cw0: 20us Temperature-Jump (Light) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cw1: 20us Temperature-Jump (Dark1) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cw2: Crystal structure of TDP1 complexed with compound XZ760
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.811 Å
Deposited: 2022-05-18
Authors: Lountos, G.T., Zhao, X.Z., Wang, W., Kiselev, E., Tropea, J.E., Needle, D., Pommier, Y., Burke, T.R.
PDB entry 8cw3: 20us Temperature-Jump (Dark2) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cw4: CryoEM structure of the N-pilus from Escherichia coli
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-05-18
Authors: Bui, K.H., Black, C.S.
PDB entry 8cw5: 200us Temperature-Jump (Light) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cw6: 200us Temperature-Jump (Dark1) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cw7: 200us Temperature-Jump (Dark2) XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cw8: Laser Off Temperature-Jump XFEL structure of Lysozyme
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2022-05-18
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cw9: Prefusion-stabilized hMPV fusion protein bound to ADI-61026 and MPE8 Fabs
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2022-05-18
Authors: Hsieh, C.-L., McLellan, J.S.
PDB entry 8cwa: Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TC conformation, 53%)
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-05-18
Authors: Ramelot, T.A., Tejero, R., Montelione, G.T.
PDB entry 8cwb: Laser Off Temperature-Jump XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2022-05-19
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cwc: 20ns Temperature-Jump (Light) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2022-05-19
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cwd: 20ns Temperature-Jump (Dark1) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2022-05-19
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cwe: 20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2022-05-19
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cwf: 200us Temperature-Jump (Light) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-05-19
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cwg: 200us Temperature-Jump (Dark1) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-05-19
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cwh: 200us Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Classification: HYDROLASE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-05-19
Authors: Wolff, A.M., Thompson, M.C., Fraser, J.S., Nango, E.
PDB entry 8cwi: Fab arm of antibody 10G4 bound to CoV-2 receptor binding domain (RBD)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.873 Å
Deposited: 2022-05-19
Authors: Langley, D.B., Christ, D.
PDB entry 8cwj: Fab arms of antibodies 4C12-B12 and CR3022 bound to pangolin receptor binding domain (pRBD)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Pangolin coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.449 Å
Deposited: 2022-05-19
Authors: Langley, D.B., Christ, D.
PDB entry 8cwk: Fab arm of antibodies 4G1-C2 and 10G4 bound to CoV-2 receptor binding domain (RBD)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.368 Å
Deposited: 2022-05-19
Authors: Langley, D.B., Christ, D.
PDB entry 8cwl: Cryo-EM structure of Human 15-PGDH in complex with small molecule SW222746
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-05-19
Authors: Huang, W., Taylor, D.J.
PDB entry 8cwm: Cryo-EM structure of the supercoiled S. islandicus REY15A archaeal flagellar filament
Classification: STRUCTURAL PROTEIN
Source organism: Sulfolobus islandicus REY15A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-05-19
Authors: Kreutzberger, M.A.B., Liu, J., Krupovic, M., Egelman, E.H.
PDB entry 8cwo: Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map
Classification: ANTIBIOTIC
Source organism: Cutibacterium acnes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-05-19
Authors: Lomakin, I.B., Devarkar, S.C., Bunick, C.G.
PDB entry 8cwp: X-ray crystal structure of NTHi Protein D bound to a putative glycerol moiety
Classification: HYDROLASE
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-05-19
Authors: Jones, S.P., Cook, K.H., Holmquist, M.L., Almekinder, L., DeLaney, A., Labbe, N., Perdue, J., Jackson, N., Charles, R., Pichichero, M., Kaur, R., Michel, L., Gleghorn, M.L.
PDB entry 8cwr: Complex structure of WhiB3 and the SigmaAr4-RNAP Beta flap tip chimera in space group R3
Classification: TRANSCRIPTION
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-05-19
Authors: Wan, T., Zhang, L.
PDB entry 8cws: Accurate computational design of genetically encoded 3D protein crystals
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 4.4 Å
Deposited: 2022-05-19
Authors: Bera, A.K., Li, Z., Baker, D.
PDB entry 8cwt: Complex structure of WhiB3 and the SigmaAr4-RNAP Beta flap tip chimera in space group P43212
Classification: TRANSCRIPTION
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-05-19
Authors: Wan, T., Zhang, L.
PDB entry 8cwu: Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with a cross-neutralizing nanobody 1-21
Classification: IMMUNE SYSTEM
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-05-19
Authors: Liu, H., Wilson, I.A.
PDB entry 8cwv: Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with a cross-neutralizing nanobody 2-31 and a human antibody CC12.1 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2022-05-19
Authors: Liu, H., Wilson, I.A.
PDB entry 8cww: Structure of S. cerevisiae Hop1 CBR bound to a nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2022-05-19
Authors: Gu, Y., Ur, S.N., Milano, C.R., Tromer, E.C., Vale-Silva, L.A., Hochwagen, A., Corbett, K.D.
PDB entry 8cwx: NMR structure of a Stapled Lanthipeptide Natural Product
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces morookaense
Experimental method: SOLUTION NMR
Deposited: 2022-05-19
Authors: Pei, Z., Zhu, L., Nair, S.K.
PDB entry 8cwy: Accurate computational design of genetically encoded 3D protein crystals
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2022-05-19
Authors: Li, Z., Borst, A.J., Baker, D.
PDB entry 8cwz: Accurate computational design of genetically encoded 3D protein crystals
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 5.53 Å
Deposited: 2022-05-19
Authors: Bera, A.K., Li, Z., Baker, D.
PDB entry 8cx0: Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM/RNA
Source organism: Homo sapiens; Human immunodeficiency virus 1; Spodoptera frugiperda
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-05-19
Authors: Li, Y., Langley, C., Azumaya, C.M., Echeverria, I., Chesarino, N.M., Emerman, M., Cheng, Y., Gross, J.D.
PDB entry 8cx1: Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM/RNA
Source organism: Homo sapiens; Human immunodeficiency virus 1; Spodoptera frugiperda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-05-19
Authors: Li, Y., Langley, C., Azumaya, C.M., Echeverria, I., Chesarino, N.M., Emerman, M., Cheng, Y., Gross, J.D.
PDB entry 8cx2: Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM/RNA
Source organism: Homo sapiens; Human immunodeficiency virus 1; Spodoptera frugiperda
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-05-19
Authors: Li, Y., Langley, C., Azumaya, C.M., Echeverria, I., Chesarino, N.M., Emerman, M., Cheng, Y., Gross, J.D.
PDB entry 8cx3: Crystal structure of full-length mesothelin
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.609 Å
Deposited: 2022-05-19
Authors: Zhan, J., Esser, L., Xia, D.
PDB entry 8cx4: TCR-antigen complex AS8.4-YEIH-HLA*B27
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-05-19
Authors: Yang, X., Jude, K.M., Garcia, K.C.
PDB entry 8cx5: Crystal Structure of small molecule alpha,beta-ketoamide 4 covalently bound to K-Ras(G12R)
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-05-19
Authors: Zhang, Z., Morstein, J., Ecker, A., Guiley, K.Z., Shokat, K.M.
PDB entry 8cx6: TPX2 Minimal Active Domain on Microtubules
Classification: CELL CYCLE
Source organism: Xenopus laevis
Experimental method: SOLID-STATE NMR
Deposited: 2022-05-19
Authors: Guo, C., Alfaro-Aco, R., Russell, R., Zhang, C., Petry, S., Polenova, T.
PDB entry 8cx8: Stx2A1-BTB13086
Classification: TOXIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.905 Å
Deposited: 2022-05-20
Authors: Rudolph, M.J., Li, X.P.
PDB entry 8cx9: Structure of the SARS-COV2 PLpro (C111S) in complex with a dimeric Ubv that inhibits activity by an unusual allosteric mechanism
Classification: VIRAL PROTEIN/SIGNALING PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-05-20
Authors: Singer, A.U., Slater, C.L., Patel, A., Russel, R., Mark, B.L., Sidhu, S.S.
PDB entry 8cxa: Crystal Structure of 3-oxoacyl-[acyl-carrier-protein] reductase from Mycobacterium smegmatis with bound NAD
Classification: OXIDOREDUCTASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-05-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8cxb: Human PA28-20S (PA28-4a3b)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-05-20
Authors: Zhao, J., Makhija, S., Huang, B., Cheng, Y.
PDB entry 8cxc: Novel Anti-Mesothelin Antibodies Enable Crystallography of the Intact Mesothelin Ectodo- main and Engineering of Potent, T cell-engaging Bispecific Therapeutics
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.31 Å
Deposited: 2022-05-20
Authors: Bandaranayake, A.D., Rupert, P.B., Lin, I., Pilat, K., Ruff, R.O., Friend, D.J., Chan, M.K., Clarke, M., Carter, J., Meshinchi, S., Mehlin, C., Olson, J.M., Strong, R.K., Correnti, C.E.
PDB entry 8cxd: Crystal Structure of EcDsbA in a complex with phenylmethanol
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-05-20
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8cxe: Crystal Structure of EcDsbA in a complex with 1H-imidazole
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-05-20
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8cxf: Crystal structure of an i-motif from the HRAS promoter region
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2022-05-20
Authors: Yatsunyk, L.A., Li, K.S.
PDB entry 8cxg: Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-05-21
Authors: Liu, W., Zhang, X.K., Gong, D.Y., Dai, X.H., Sharma, A., Zhang, T.H., Rey, F., Zhou, Z.H.
PDB entry 8cxh: Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-05-21
Authors: Liu, W., Zhang, X.K., Gong, D.Y., Dai, X.H., Sharma, A., Zhang, T.H., Rey, F., Zhou, Z.H.
PDB entry 8cxi: Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-05-21
Authors: Liu, W., Zhang, X.K., Gong, D.Y., Dai, X.H., Sharma, A., Zhang, T.H., Rey, F., Zhou, Z.H.
PDB entry 8cxj: The IgI3 domain of R28 protein from S. pyogenes bound to CEACAM1
Classification: CELL ADHESION
Source organism: Homo sapiens; Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2022-05-21
Authors: Bonsor, D.A., McCarthy, A.J.
PDB entry 8cxk: Structure of the C. elegans HIM-3 R93Y mutant
Classification: PEPTIDE BINDING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-05-21
Authors: Ego, K.M., Russo, A., Giacopazzi, S., Deshong, A., Menon, M., Ortiz, V., Bhalla, N., Corbett, K.D.
PDB entry 8cxl: Structure of NapH3, a vanadium-dependent haloperoxidase homolog catalyzing the stereospecific alpha-hydroxyketone rearrangement reaction in napyradiomycin biosynthesis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sp. CNQ-525
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-05-21
Authors: Chen, P.Y.-T., Chekan, J.R., Moore, B.S.
PDB entry 8cxm: Cryo-EM structure of the supercoiled E. coli K12 flagellar filament core, Normal waveform
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2022-05-21
Authors: Sonani, R.R., Kreutzberger, M.A.B., Sebastian, A.L., Scharf, B., Egelman, E.H.
PDB entry 8cxn: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-57
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-05-22
Authors: Huang, W., Taylor, D.
PDB entry 8cxo: Cryo-EM structure of the unliganded mSMO-PGS2 in a lipidic environment
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Pyrococcus abyssi (strain GE5 / Orsay)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-05-22
Authors: Zhang, K., Wu, H., Hoppe, N., Manglik, A., Cheng, Y.
PDB entry 8cxp: Characterisation of a Seneca Valley Virus Thermostable Mutant
Classification: VIRUS
Source organism: Senecavirus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2022-05-22
Authors: Jayawardena, N., Bostina, M., Strauss, M.
PDB entry 8cxq: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 1-22
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2022-05-22
Authors: Huang, W., Taylor, D.
PDB entry 8cxr: Crystal structure of MraY bound to a sphaerimicin analogue
Classification: MEMBRANE PROTEIN/Transferase
Source organism: Aquifex aeolicus; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.65 Å
Deposited: 2022-05-22
Authors: Mashalidis, E.H., Lee, S.Y.
PDB entry 8cxs: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor MTA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2022-05-22
Authors: Horton, J.R., Zhou, J., Cheng, X.
PDB entry 8cxt: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor N6-benzyladenosine (Compound 1)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile 630; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2022-05-22
Authors: Horton, J.R., Zhou, J., Cheng, X.
PDB entry 8cxu: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Compound 2
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile 630; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2022-05-22
Authors: Horton, J.R., Zhou, J., Cheng, X.
PDB entry 8cxv: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Compound 3
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile 630; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2022-05-22
Authors: Horton, J.R., Zhou, J., Cheng, X.
PDB entry 8cxw: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor piclidenoson (Compound 4)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile 630; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2022-05-22
Authors: Horton, J.R., Zhou, J., Cheng, X.
PDB entry 8cxx: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Compound 6
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile 630; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2022-05-22
Authors: Horton, J.R., Zhou, J., Cheng, X.
PDB entry 8cxy: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor N6-(2-Phenethyl)adenosine (Compound 8)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2022-05-22
Authors: Horton, J.R., Zhou, J., Cheng, X.
PDB entry 8cxz: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor N6-(3-Phenylpropyl)adenosine (Compound 14)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-05-22
Authors: Zhou, J., Horton, J.R., Cheng, X.
PDB entry 8cy0: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor MC4756 (Compound 178)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-05-22
Authors: Zhou, J., Horton, J.R., Cheng, X.
PDB entry 8cy1: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Compound 19
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2022-05-22
Authors: Zhou, J., Horton, J.R., Cheng, X.
PDB entry 8cy2: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor APNEA (Compound 9)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-05-22
Authors: Horton, J.R., Zhou, J., Cheng, X.
PDB entry 8cy3: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Compound 15
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-05-22
Authors: Zhou, J., Horton, J.R., Cheng, X.
PDB entry 8cy4: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Compound 16
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2022-05-22
Authors: Zhou, J., Horton, J.R., Cheng, X.
PDB entry 8cy5: CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Compound 39
Classification: DNA BINDING PROTEIN/DNA
Source organism: Clostridioides difficile; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-05-22
Authors: Zhou, J., Horton, J.R., Cheng, X.
PDB entry 8cy6: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-65
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-05-23
Authors: Huang, W., Taylor, D.
PDB entry 8cy7: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-34
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-05-23
Authors: Huang, W., Taylor, D.
PDB entry 8cy8: apo form Cryo-EM structure of Campylobacter jejune ketol-acid reductoisommerase crosslinked by Glutaraldehyde
Classification: ISOMERASE
Source organism: Campylobacter jejuni
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2022-05-23
Authors: Zheng, S., Guddat, L.W.
PDB entry 8cy9: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 1-23
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-05-23
Authors: Huang, W., Taylor, D.
PDB entry 8cya: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-67
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-05-23
Authors: Huang, W., Taylor, D.
PDB entry 8cyb: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 1-8
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-05-23
Authors: Huang, W., Taylor, D.
PDB entry 8cyc: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-34
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-05-23
Authors: Huang, W., Taylor, D.
PDB entry 8cyd: SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-45
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-05-23
Authors: Huang, W., Taylor, D.
PDB entry 8cye: Cryo-EM asymmetric reconstruction of the EPEC H6 bacterial flagellar filament Normal Waveform
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli O127:H6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-05-23
Authors: Kreutzberger, M.A.B., Chatterjee, S., Frankel, G., Egelman, E.H.
PDB entry 8cyf: WhiB3 bound to SigmaAr4-RNAP Beta flap tip chimera and DNA
Classification: TRANSCRIPTION/DNA/Transferase
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2022-05-23
Authors: Wan, T., Zhang, L.M.
PDB entry 8cyg: Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle
Classification: VIRUS LIKE PARTICLE
Source organism: Anelloviridae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2022-05-23
Authors: Liou, S.H., Delagrave, S., Swanson, K.
PDB entry 8cyh: Novel Anti-Mesothelin Antibodies Enable Crystallography of the Intact Mesothelin Ectodo- main and Engineering of Potent, T cell-engaging Bispecific Therapeutics
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.38 Å
Deposited: 2022-05-23
Authors: Bandaranayake, A.D., Rupert, P.B., Lin, I., Pilat, K., Ruff, R.O., Friend, D.J., Chan, M.K., Clarke, M., Carter, J., Meshinchi, S., Mehlin, C., Olson, J.M., Strong, R.K., Correnti, C.E.
PDB entry 8cyi: Cryo-EM structures and computational analysis for enhanced potency in MTA-synergic inhibition of human protein arginine methyltransferase 5
Classification: ONCOPROTEIN/Transferase
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-05-23
Authors: Yadav, G.P., Wei, Z., Xiaozhi, Y., Chenglong, L., Jiang, Q.
PDB entry 8cyj: RBD of SARS-CoV-2 Spike protein in complex with pan-sarbecovirus nanobodies 2-10, 2-67, 2-62 and 1-25
Classification: VIRAL PROTEIN
Source organism: Lama glama; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-05-23
Authors: Huang, W., Taylor, D.
PDB entry 8cyk: Crystal structure of hallucinated protein HALC1_878
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-05-23
Authors: Ragotte, R.J., Bera, A.K., Milles, L.F., Wicky, B.I.M., Baker, D.
PDB entry 8cyl: Ast89 P domain
Classification: VIRAL PROTEIN
Source organism: Lagovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.888 Å
Deposited: 2022-05-23
Authors: Leuthold, M., Kilic, T., Hansman, G.
PDB entry 8cym: [2T7+9bp Linker] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle with 9 bp Sticky-End Linker
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 7.76 Å
Deposited: 2022-05-24
Authors: Lu, B., Vecchioni, S., Ohayon, Y.P., Seeman, N.C., Mao, C., Sha, R.
PDB entry 8cyn: [2T7+20bp Linker] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle with 20 bp Sticky-End Linker
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 9.45 Å
Deposited: 2022-05-24
Authors: Lu, B., Vecchioni, S., Ohayon, Y.P., Seeman, N.C., Mao, C., Sha, R.
PDB entry 8cyo: Nurr1 Covalently Bound to a Synthetic Ligand, 10.25, via a Disulfide Bond
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2022-05-24
Authors: Bruning, J.M., Liu, J., England, P.M.
PDB entry 8cyr: Alpha-synuclein fibril from spontaneous control
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cys: CryoEM structures of amplified alpha-synuclein fibril class B type II with extended core from DLB case I
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cyt: CryoEM structures of amplified alpha-synuclein fibril class A type I with extended core from DLB case I
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cyu: Crystal structure of SARS-CoV-2 Mpro with compound C5
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-05-24
Authors: Worrall, L.J., Lee, J., Strynadka, N.C.J.
PDB entry 8cyv: CryoEM structures of amplified alpha-synuclein fibril class B mixed type I/II with extended core from DLB case II
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cyw: CryoEM structures of amplified alpha-synuclein fibril class B type I with compact core from DLB case III
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cyx: CryoEM structure of amplified alpha-synuclein fibril class A type I with compact core from DLB case III
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cyy: CryoEM structure of amplified alpha-synuclein fibril class B mixed type I/II with extended core from DLB case V
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cyz: Crystal structure of SARS-CoV-2 Mpro with compound C4
Classification: VIRAL PROTEIN, Hydrolase
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-05-24
Authors: Worrall, L.J., Lee, J., Strynadka, N.C.J.
PDB entry 8cz0: CryoEM structure of amplified alpha-synuclein fibril class B type I with extended core from DLB case VII
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cz1: CryoEM structure of amplified alpha-synuclein fibril class B type II with extended core from DLB case VII
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cz2: CryoEM structure of amplified alpha-synuclein fibril class A type I with extended core from DLB case VII
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cz3: CryoEM structure of amplified alpha-synuclein fibril class B type I with extended core from DLB case X
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cz4: Crystal structure of SARS-CoV-2 Mpro with compound C3
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-05-24
Authors: Worrall, L.J., Lee, J., Strynadka, N.C.J.
PDB entry 8cz5: N11 P domain 2D9 Fab P complex
Classification: VIRAL PROTEIN/Immune System
Source organism: Lagovirus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.645 Å
Deposited: 2022-05-24
Authors: Leuthold, M., Kilic, T., Hansman, G.
PDB entry 8cz6: CryoEM structure of amplified alpha-synuclein fibril class A type I with extended core from DLB case X
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-05-24
Authors: Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
PDB entry 8cz7: Crystal structure of SARS-CoV-2 Mpro with compound C2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-05-24
Authors: Worrall, L.J., Lee, J., Strynadka, N.C.J.
PDB entry 8cz8: Novel Anti-Mesothelin Antibodies Enable Crystallography of the Intact Mesothelin Ectodo- main and Engineering of Potent, T cell-engaging Bispecific Therapeutics
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-05-24
Authors: Bandaranayake, A.D., Rupert, P.B., Lin, I., Pilat, K., Ruff, R.O., Friend, D.J., Chan, M.K., Clarke, M., Carter, J., Meshinchi, S., Mehlin, C., Olson, J.M., Strong, R.K., Correnti, C.E.
PDB entry 8cz9: Crystal Structure of the E372K LNK SH2 Domain mutant in Complex with a JAK2 pY813 Phosphopeptide
Classification: SIGNALING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-05-24
Authors: Morris, R., Kershaw, N.J., Babon, J.J.
PDB entry 8cza: Crystal structure of the first bromodomain (BD1) of human BRDT bound to GXH-IV-075
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2022-05-24
Authors: Chan, A., Schonbrunn, E.
PDB entry 8czc: AT from first module of the pikromycin synthase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces venezuelae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2022-05-24
Authors: Keatinge-Clay, A.T., Dickinson, M.S., Miyazawa, T., McCool, R.S.
PDB entry 8czd: Cryo-EM structure of BCL10 R58Q filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2022-05-24
Authors: David, L., Wu, H.
PDB entry 8cze: Structure of a Xenopus Nucleosome with Widom 601 DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2022-05-24
Authors: Gu, Y., Ur, S.N., Milano, C.R., Tromer, E.C., Vale-Silva, L.A., Hochwagen, A., Corbett, K.D.
PDB entry 8czf: Human BAK in complex with the dF2 peptide
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-05-24
Authors: Aguilar, F., Keating, A.E.
PDB entry 8czg: Human BAK in complex with the dF3 peptide
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-05-24
Authors: Aguilar, F., Keating, A.E.
PDB entry 8czh: Human BAK in complex with the dM2 peptide
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-05-24
Authors: Aguilar, F., Keating, A.E.
PDB entry 8czi: Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2
Classification: VIRAL PROTEIN
Source organism: Nostoc punctiforme (strain ATCC 29133 / PCC 73102); Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.22 Å
Deposited: 2022-05-24
Authors: Yang, K., Brunger, A.T.
PDB entry 8czj: A bacteria Zrt/Irt-like protein in the apo state
Classification: TRANSPORT PROTEIN
Source organism: Bordetella bronchiseptica RB50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.751 Å
Deposited: 2022-05-24
Authors: Zhang, Y., Hu, J.
PDB entry 8czk: Human LanCL1 bound to GSH and Dhb-Erk peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-05-24
Authors: Ongpipattanakul, C., Nair, S.K.
PDB entry 8czl: Human LanCL1 bound to methyl glutathione (MeGSH)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-05-24
Authors: Ongpipattanakul, C., Nair, S.K.
PDB entry 8czm: Crystal Structure of EcDsbA in a complex with 4-bromo-1H-pyrazole
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-05-25
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8czn: Crystal Structure of EcDsbA in a complex with 1H-pyrrole-3-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-05-25
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8czo: Cryo-EM structure of BCL10 CARD - MALT1 DD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-05-25
Authors: David, L., Wu, H.
PDB entry 8czp: 2.25 angstrom resolution crystal structure of as-isolated KatG from Mycobacterium tuberculosis with an MYW cofactor
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-05-25
Authors: Li, J., Liu, A.
PDB entry 8czq: The crystal structure of MtbTOP1 in complex with both G- and T-segments
Classification: ISOMERASE/DNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2022-05-25
Authors: Tan, K., Tse-Dinh, Y.-C.
PDB entry 8czt: Structure of MERS 3CL protease in complex with the cyclopropane based inhibitor 15d
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-05-25
Authors: Liu, L., Lovell, S., Battaile, K.P., Nguyen, H.N., Chamandi, S.D., Picard, H.R., Madden, T.K., Thruman, H.A., Kim, Y., Groutas, W.C., Chang, K.O.
PDB entry 8czu: Structure of MERS 3CL protease in complex with the cyclopropane based inhibitor 16d
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-05-25
Authors: Liu, L., Lovell, S., Battaile, K.P., Nguyen, H.N., Chamandi, S.D., Picard, H.R., Madden, T.K., Thruman, H.A., Kim, Y., Groutas, W.C., Chang, K.O.
PDB entry 8czv: Structure of MERS 3CL protease in complex with the cyclopropane based inhibitor 17d
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-05-25
Authors: Liu, L., Lovell, S., Battaile, K.P., Nguyen, H.N., Chamandi, S.D., Picard, H.R., Madden, T.K., Thruman, H.A., Kim, Y., Groutas, W.C., Chang, K.O.
PDB entry 8czw: Structure of SARS-CoV-2 3CL protease in complex with the cyclopropane based inhibitor 15d
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-05-25
Authors: Machen, A.J., Lovell, S., Battaile, K.P., Nguyen, H.N., Chamandi, S.D., Picard, H.R., Madden, T.K., Thruman, H.A., Kim, Y., Groutas, W.C., Chang, K.O.
PDB entry 8czx: Structure of SARS-CoV-2 3CL protease in complex with the cyclopropane based inhibitor 17d
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-05-25
Authors: Machen, A.J., Lovell, S., Battaile, K.P., Nguyen, H.N., Chamandi, S.D., Picard, H.R., Madden, T.K., Thruman, H.A., Kim, Y., Groutas, W.C., Chang, K.O.
PDB entry 8czz: Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer with LMHS mutations in complex with Temsavir, 8ANC195, and 10-1074
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2022-05-25
Authors: Chen, Y., Pozharski, E., Tolbert, W., Pazgier, M.