LiteFold/PDB huggingface dataset:
PDB entry 7e6t: Structural insights into the activation of human calcium-sensing receptor
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-02-24
Authors: Geng, Y., Chen, X.C., Wang, L., Cui, Q.Q., Ding, Z.Y., Han, L., Kou, Y.J., Zhang, W.Q., Wang, H.N., Jia, X.M., Dai, M., Shi, Z.Z., Li, Y.Y., Li, X.Y.
PDB entry 7e6u: the complex of inactive CaSR and NB2D11
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia phage EcSzw-2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2021-02-24
Authors: Geng, Y., Chen, X.C., Wang, L., Cui, Q.Q., Ding, Z.Y., Han, L., Kou, Y.J., Zhang, W.Q., Wang, H.N., Jia, X.M., Dai, M., Shi, Z.Z., Li, Y.Y., Li, X.Y.
PDB entry 7e6v: The crystal structure of foot-and-mouth disease virus(FMDV) 2C protein 97-318aa
Classification: HYDROLASE
Source organism: Foot-and-mouth disease virus - type SAT 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.832 Å
Deposited: 2021-02-24
Authors: Zhang, C., Wojdyla, J.A., Qin, B., Wang, M., Gao, X., Cui, S.
PDB entry 7e6w: Crystal structure of Sesquisabinene B Synthase 1 mutant G418A and F419N
Classification: LYASE
Source organism: Santalum album
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-02-24
Authors: Singh, S., Thulasiram, H.V., Kulkarni, K.A.
PDB entry 7e6x: Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 4 ms structure
Classification: MEMBRANE PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-24
Authors: Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.
PDB entry 7e6y: Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure
Classification: MEMBRANE PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-24
Authors: Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.
PDB entry 7e6z: Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 50 microsecond structure
Classification: MEMBRANE PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-24
Authors: Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.
PDB entry 7e70: Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 250 microsecond structure
Classification: MEMBRANE PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-24
Authors: Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.
PDB entry 7e71: Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 ms structure
Classification: MEMBRANE PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-02-24
Authors: Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.
PDB entry 7e72: Crystal structure of Tie2-agonistic antibody in complex with human Tie2 Fn2-3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.094 Å
Deposited: 2021-02-25
Authors: Kim, H.M., Jo, G.H., Hong, H.J., Han, A.
PDB entry 7e73: Crystal structure of human ERK2 mutant (Y36H)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2021-02-25
Authors: Park, Y.S., Kim, M., Ryu, S.E.
PDB entry 7e74: Crystal structure of ENL YEATS domain T3 mutant in complex with histone H3 acetylation at K27
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-02-25
Authors: Li, Y., Li, H.
PDB entry 7e75: Crystal structure of human ERK2 mutant (G37C)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.481 Å
Deposited: 2021-02-25
Authors: Park, Y.S., Kim, M., Ryu, S.E.
PDB entry 7e76: The structure of chloroplastic TaPGI
Classification: ISOMERASE
Source organism: Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2021-02-25
Authors: Gao, F., Liu, C.M.
PDB entry 7e77: The structure of cytosolic TaPGI
Classification: ISOMERASE
Source organism: Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2021-02-25
Authors: Gao, F., Liu, C.M.
PDB entry 7e78: the structure of cytosolic TaPGI with substrate
Classification: ISOMERASE
Source organism: Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2021-02-25
Authors: Gao, F., Liu, C.M.
PDB entry 7e7a: Crystal structure of apo ENL YEATS domain T3 mutant
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2021-02-25
Authors: Li, Y., Li, H.
PDB entry 7e7b: Cryo-EM structure of the SARS-CoV-2 furin site mutant S-Trimer from a subunit vaccine candidate
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-02-25
Authors: Zheng, S., Ma, J.
PDB entry 7e7c: Crystal structure of ENL YEATS domain T1 mutant in complex with histone H3 acetylation at K27
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2021-02-25
Authors: Li, Y., Li, H.
PDB entry 7e7d: Cryo-EM structure of the SARS-CoV-2 wild-type S-Trimer from a subunit vaccine candidate
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-02-25
Authors: Zheng, S., Ma, J.
PDB entry 7e7e: The co-crystal structure of ACE2 with Fab
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2021-02-26
Authors: Xiao, J.Y., Zhang, Y.
PDB entry 7e7f: Human CYP11B1 mutant in complex with metyrapone
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-02-26
Authors: Mukai, K., Sugimoto, H., Reiko, S., Matsuura, T., Hishiki, T., Kagawa, N.
PDB entry 7e7g: 2-aminoethylphosphonate:pyruvate aminotransferase (AEPT) native
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-02-26
Authors: Jia, H., Zhang, Q., Bartlam, M.
PDB entry 7e7h: Crystal Structure of a pseudooxynicotine amine oxidase Pnao from Pseudomonas putida S16
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-02-26
Authors: Tang, H.Z.
PDB entry 7e7i: Cryo-EM structure of human ABCA4 in the apo state
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-02-26
Authors: Xie, T., Zhang, Z.K., Gong, X.
PDB entry 7e7l: The crystal structure of arylacetate decarboxylase from Olsenella scatoligenes.
Classification: LYASE
Source organism: Olsenella scatoligenes
Experimental method: X-RAY DIFFRACTION
Resolution: 3.53 Å
Deposited: 2021-02-26
Authors: Lu, Q., Duan, Y., Zhang, Y., Yuchi, Z.
PDB entry 7e7m: Crystal Structure Analysis of the Streptococcus agalactiae Ribose Binding Protein RbsB
Classification: SUGAR BINDING PROTEIN
Source organism: Streptococcus agalactiae ZQ0910
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-02-26
Authors: Pan, L.X., Wang, B., Yang, L.Y., Yang, D.F.
PDB entry 7e7n: Crystal structure of RSL mutant-R17A/R108A/R199A in complex with R3F
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-02-26
Authors: Li, L., Chen, G.S.
PDB entry 7e7o: Cryo-EM structure of human ABCA4 in NRPE-bound state
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-02-26
Authors: Xie, T., Zhang, Z.K., Gong, X.
PDB entry 7e7q: Cryo-EM structure of human ABCA4 in ATP-bound state
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-02-26
Authors: Xie, T., Zhang, Z.K., Gong, X.
PDB entry 7e7r: Crystal structure of RSL mutant in complex with Ligand
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2021-02-27
Authors: Li, L., Chen, G.S.
PDB entry 7e7s: WT transporter state1
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-02-27
Authors: Zhang, Y., Watanabe, S., Tsutsumi, A., Inaba, K.
PDB entry 7e7t: Crystal structure of RSL mutant in complex with sugar Ligand
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2021-02-27
Authors: Li, L., Chen, G.S.
PDB entry 7e7u: Crystal structure of RSL mutant in complex with sugar Ligand
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-02-27
Authors: Li, L., Chen, G.S.
PDB entry 7e7v: Crystal structure of RSL mutant in complex with sugar Ligand
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2021-02-28
Authors: Li, L., Chen, G.S.
PDB entry 7e7w: Crystal structure of RSL mutant in complex with sugar Ligand
Classification: SUGAR BINDING PROTEIN
Source organism: Ralstonia solanacearum
Experimental method: X-RAY DIFFRACTION
Resolution: 4.1 Å
Deposited: 2021-02-28
Authors: Li, L., Chen, G.S.
PDB entry 7e7x: SARS-CoV-2 Spike Protein N terminal domain in Complex with N11 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2021-02-28
Authors: Zhang, Z., Shuo, D., Xiao, J.
PDB entry 7e7y: Crystal structure of the SARS-CoV-2 S RBD in complex with BD-623 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2021-02-28
Authors: Wei, Y., Xiao, J.
PDB entry 7e7z: CryoEM structure of the human Kv4.2-KChIP1 complex, transmembrane region
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-02-28
Authors: Kise, Y., Nureki, O.
PDB entry 7e80: Cryo-EM structure of the flagellar rod with hook and export apparatus from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2021-02-28
Authors: Tan, J.X., Chang, S.H., Wang, X.F., Xu, C.H., Zhou, Y., Zhang, X., Zhu, Y.Q.
PDB entry 7e81: Cryo-EM structure of the flagellar MS ring with FlgB-Dc loop and FliE-helix 1 from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2021-02-28
Authors: Tan, J.X., Chang, S.H., Wang, X.F., Xu, C.H., Zhou, Y., Zhang, X., Zhu, Y.Q.
PDB entry 7e82: Cryo-EM structure of the flagellar rod with partial hook from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-02-28
Authors: Tan, J.X., Chang, S.H., Wang, X.F., Xu, C.H., Zhou, Y., Zhang, X., Zhu, Y.Q.
PDB entry 7e83: CryoEM structure of the human Kv4.2-KChIP1 complex, intracellular region
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-02-28
Authors: Kise, Y., Nureki, O.
PDB entry 7e84: CryoEM structure of human Kv4.2-KChIP1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Octodon degus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-02-28
Authors: Kise, Y., Nureki, O.
PDB entry 7e85: SnoaL-like domain-containing protein
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.424 Å
Deposited: 2021-03-01
Authors: Zhuang, J.
PDB entry 7e86: Crystal structure of the SARS-CoV-2 S RBD in complex with BD-508 Fab
Classification: VIRAL PROTEIN,IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-03-01
Authors: Gao, C., Xiao, J.
PDB entry 7e87: CryoEM structure of the human Kv4.2-DPP6S complex, transmembrane and intracellular region
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-03-01
Authors: Kise, Y., Nureki, O.
PDB entry 7e88: Crystal structure of the SARS-CoV-2 S RBD in complex with BD-515 Fab
Classification: VIRAL PROTEIN,IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2021-03-01
Authors: Gao, C., Wei, Y., Xiao, J.
PDB entry 7e89: CryoEM structure of human Kv4.2-DPP6S complex, extracellular region
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-03-01
Authors: Kise, Y., Nureki, O.
PDB entry 7e8b: CryoEM structure of human Kv4.2-DPP6S complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-03-01
Authors: Kise, Y., Nureki, O.
PDB entry 7e8c: SARS-CoV-2 S-6P in complex with 9 Fabs
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2021-03-01
Authors: Du, S., Xiao, J., Zhang, Z.
PDB entry 7e8d: NSD2 E1099K mutant bound to nucleosome
Classification: GENE REGULATION
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-03-01
Authors: Sengoku, T., Sato, K., Nishizawa, T., Nureki, O., Ogata, K.
PDB entry 7e8e: CryoEM structure of human Kv4.2-DPP6S-KChIP1 complex, transmembrane and intracellular region
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-03-01
Authors: Kise, Y., Nureki, O.
PDB entry 7e8f: SARS-CoV-2 NTD in complex with N9 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2021-03-01
Authors: Du, S., Xiao, J., Zhang, Z.
PDB entry 7e8g: CryoEM structure of human Kv4.2-DPP6S-KChIP1 complex, extracellular region
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2021-03-01
Authors: Kise, Y., Nureki, O.
PDB entry 7e8h: CryoEM structure of human Kv4.2-DPP6S-KChIP1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2021-03-01
Authors: Kise, Y., Nureki, O.
PDB entry 7e8i: Structural insight into BRCA1-BARD1 complex recruitment to damaged chromatin
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-03-01
Authors: Dai, Y., Dai, L., Zhou, Z.
PDB entry 7e8j: Crystal structure of Proteinaceous RNase P (PRORP) from Thermococcus celer
Classification: HYDROLASE
Source organism: Thermococcus celer Vu 13 = JCM 8558
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-02
Authors: Li, Y.Y., Gan, J.H.
PDB entry 7e8k: Crystal structure of Proteinaceous RNase P (PRORP) from Planctomycetes bacterium GWF2_40_8
Classification: HYDROLASE
Source organism: Planctomycetes bacterium GWF2_40_8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-03-02
Authors: Li, Y.Y., Gan, J.H.
PDB entry 7e8l: The structure of Spodoptera litura chemosensory protein
Classification: STRUCTURAL PROTEIN
Source organism: Spodoptera litura
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-03-02
Authors: Xie, W., Jia, Q., Zeng, H., Xiao, N., Tang, J., Gao, S., Zhang, J.
PDB entry 7e8m: Crystal structure of SARS-CoV-2 antibody P2C-1F11 with mutated RBD
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-03-02
Authors: Wang, X.Q., Zhang, L.Q., Ge, J.W., Wang, R.K., Lan, J.
PDB entry 7e8n: Crystal structure of Type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554
Classification: TRANSFERASE
Source organism: Hymenobacter sp. PAMC 26554
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-03-02
Authors: Park, S.-H., Lee, C.W., Bae, D.-W., Lee, J.H.
PDB entry 7e8o: Crystal structure of proteinaceous RNase P(PRORP) from Planctomycetes bacterium GWF2_40_8 complexed with Escherichia coli histidine pre-tRNA
Classification: HYDROLASE
Source organism: Planctomycetes bacterium GWF2_40_8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.804 Å
Deposited: 2021-03-02
Authors: Li, Y.Y., Gan, J.H.
PDB entry 7e8p: Crystal structure of a Flavin-dependent Monooxygenase HadA wild type complexed with reduced FAD and 4-nitrophenol
Classification: OXIDOREDUCTASE
Source organism: Ralstonia pickettii DTP0602
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-03-02
Authors: Pimviriyakul, P., Jaruwat, A., Chitnumsub, P., Chaiyen, P.
PDB entry 7e8q: Crystal structure of a Flavin-dependent Monooxygenase HadA F441V mutant complexed with reduced FAD and 4-nitrophenol
Classification: OXIDOREDUCTASE
Source organism: Ralstonia pickettii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-03-02
Authors: Pimviriyakul, P., Jaruwat, A., Chitnumsub, P., Chaiyen, P.
PDB entry 7e8r: EcoT38I restriction endonuclease
Classification: DNA BINDING PROTEIN
Source organism: Escherichia phage P2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-02
Authors: Kita, K., Mikami, B.
PDB entry 7e8s: Intact TRAPPII (state I).
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.36 Å
Deposited: 2021-03-02
Authors: Mi, C.C., Sui, S.F.
PDB entry 7e8t: Monomer of Ypt32-TRAPPII
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-03-02
Authors: Mi, C.C., Sui, S.F.
PDB entry 7e8z: Crystal structure of the human fat mass and obesity associated protein (FTO) in complex with SS81
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-03-03
Authors: Tam, N.Y., Ng, Y.M., Shishodia, S., McDonough, M.A., Schofield, C.J., Aik, W.S.
PDB entry 7e90: Crystal structure of the receiver domain (D51E) of the response regulator VbrR from Vibrio parahaemolyticus
Classification: TRANSCRIPTION
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-03-03
Authors: Cho, S.Y., Yoon, S.I.
PDB entry 7e92: Crystal structure of the DNA-binding domain of the response regulator VbrR from Vibrio parahaemolyticus
Classification: TRANSCRIPTION
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-03-03
Authors: Cho, S.Y., Yoon, S.I.
PDB entry 7e93: Intact TRAPPII (state III).
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.54 Å
Deposited: 2021-03-03
Authors: Mi, C.C., Sui, S.F.
PDB entry 7e94: Intact TRAPPII (State II)
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.67 Å
Deposited: 2021-03-03
Authors: Mi, C.C., Sui, S.F.
PDB entry 7e96: Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 69% oxygen saturation
Classification: OXYGEN TRANSPORT
Source organism: Oligobrachia mashikoi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-03-03
Authors: Numoto, N., Kawano, Y., Okumura, H., Baba, S., Fukumori, Y., Miki, K., Ito, N.
PDB entry 7e97: Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 58% oxygen saturation
Classification: OXYGEN TRANSPORT
Source organism: Oligobrachia mashikoi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-03
Authors: Numoto, N., Kawano, Y., Okumura, H., Baba, S., Fukumori, Y., Miki, K., Ito, N.
PDB entry 7e98: Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 21% oxygen saturation
Classification: OXYGEN TRANSPORT
Source organism: Oligobrachia mashikoi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-03-03
Authors: Numoto, N., Kawano, Y., Okumura, H., Baba, S., Fukumori, Y., Miki, K., Ito, N.
PDB entry 7e99: Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 13% oxygen saturation
Classification: OXYGEN TRANSPORT
Source organism: Oligobrachia mashikoi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-03
Authors: Numoto, N., Kawano, Y., Okumura, H., Baba, S., Fukumori, Y., Miki, K., Ito, N.
PDB entry 7e9a: Crystal structure of KPC-2 in complex with (S)-2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-3-yl)acrylic acid (4a-(S))
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-03-03
Authors: Li, G.-B., Yan, Y.-H.
PDB entry 7e9b: Structural basis of HLX10 PD-1 receptor recognition, a promising anti-PD-1 antibody clinical candidate for cancer immunotherapy
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-03-04
Authors: Fan, S.L., Jiang, W.D.
PDB entry 7e9c: Cryo-EM structure of the 1:1 Orc1 BAH domain in complex with nucleosome
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-03-04
Authors: Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.
PDB entry 7e9d: H102A mutant of IRG1 from bacillus
Classification: IMMUNE SYSTEM
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2021-03-04
Authors: Park, H.H., Park, H.H.
PDB entry 7e9e: Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2021-03-04
Authors: Numata, T., Schneekloth, J.S.
PDB entry 7e9f: Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-03-04
Authors: Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.
PDB entry 7e9g: Cryo-EM structure of Gi-bound metabotropic glutamate receptor mGlu2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-03-04
Authors: Lin, S., Han, S., Zhao, Q., Wu, B.
PDB entry 7e9h: Cryo-EM structure of Gi-bound metabotropic glutamate receptor mGlu4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-03-04
Authors: Lin, S., Han, S., Zhao, Q., Wu, B.
PDB entry 7e9i: Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probe
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-03-04
Authors: Numata, T., Schneekloth, J.S.
PDB entry 7e9j: Crystal Structure of POMGNT2 in complex with UDP
Classification: TRANSFERASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-03-04
Authors: Kuwabara, N.
PDB entry 7e9k: Crystal Structure of POMGNT2 in complex with UDP and mono-mannosyl peptide (379Man long peptide)
Classification: TRANSFERASE
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-03-04
Authors: Kuwabara, N.
PDB entry 7e9l: Crystal Structure of POMGNT2 in complex with UDP and mono-mannosyl peptide (379Man short peptide)
Classification: TRANSFERASE
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-04
Authors: Kuwabara, N.
PDB entry 7e9m: Crystal Structure of Spindlin1 bound to SPINDOC Docpep3
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-04
Authors: Zhao, F., Li, H.
PDB entry 7e9n: Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(1 down RBD, state1)
Classification: VIRAL PROTEIN,IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2021-03-04
Authors: Wang, X.F., Zhu, Y.Q.
PDB entry 7e9o: Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(3 up RBDs, state2)
Classification: VIRAL PROTEIN,IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2021-03-04
Authors: Wang, X.F., Zhu, Y.Q.
PDB entry 7e9p: Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(state2, local refinement of the RBD and 35B5 Fab)
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2021-03-04
Authors: Wang, X.F., Zhu, Y.Q.
PDB entry 7e9q: Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(1 out RBD, state3)
Classification: VIRAL PROTEIN,IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2021-03-04
Authors: Wang, X.F., Zhu, Y.Q.
PDB entry 7e9r: Crystal structure of Sesquisabinene B Synthase 1 mutant T313S
Classification: LYASE
Source organism: Santalum album
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2021-03-04
Authors: Singh, S., Thulasiram, H.V., Kulkarni, K.A.
PDB entry 7e9s: Archaeal oligosaccharyltransferase AglB from Archaeoglobus fulgidus in complex with an inhibitory peptide and a dolichol-phosphate
Classification: TRANSFERASE
Source organism: Archaeoglobus fulgidus DSM 4304; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-05
Authors: Taguchi, Y., Hirata, K., Kohda, D.
PDB entry 7e9t: Nanometer resolution in situ structure of SARS-CoV-2 post-fusion spike
Classification: VIRUS
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.9 Å
Deposited: 2021-03-05
Authors: Zhu, Y., Tai, L., Zhu, G., Yin, G., Sun, F.
PDB entry 7e9u: Trehalase of Arabidopsis thaliana
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-05
Authors: Taguchi, Y., Saburi, W., Yu, J., Imai, R., Yao, M., Mori, H.
PDB entry 7e9v: The Crystal Structure of human UMP-CMP kinase from Biortus.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-05
Authors: Wang, F., Lin, D., Wang, R., Wei, X., Shen, Z., Wang, M.
PDB entry 7e9w: The Crystal Structure of D-psicose-3-epimerase from Biortus.
Classification: ISOMERASE
Source organism: Ruminiclostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-05
Authors: Wang, F., Xu, C., Qi, J., Zhang, M., Tian, F., Wang, M.
PDB entry 7e9x: Trehalase of Arabidopsis thaliana acid mutant -D380A
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-03-05
Authors: Taguchi, Y., Saburi, W., Yu, J., Imai, R., Yao, M., Mori, H.
PDB entry 7e9y: Crystal structure of eLACCO1
Classification: FLUORESCENT PROTEIN
Source organism: Thermus thermophilus; Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-03-05
Authors: Wen, Y., Campbell, R.E., Lemieux, M.J., Nasu, Y.
PDB entry 7ea0: Crystal structure of human pyruvate dehydrogenase kinase 2 in complex with compound 1
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2021-03-05
Authors: Orita, T., Doi, S., Iwanaga, T., Adachi, T.
PDB entry 7ea1: Crystal Structure of Spindlin1 bound to SPINDOC Docpep2
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-05
Authors: Zhao, F., Li, H.
PDB entry 7ea2: crystal structure of NAP1 FIR in complex with RB1CC1 Claw domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2021-03-06
Authors: Fu, T., Pan, L.
PDB entry 7ea3: Intact Ypt32-TRAPPII (dimer).
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.31 Å
Deposited: 2021-03-06
Authors: Mi, C.C., Sui, S.F.
PDB entry 7ea4: Crystal Structure of L182E D-Succinylase (DSA) from Cupriavidus sp. P4-10-C
Classification: HYDROLASE
Source organism: Cupriavidus sp. P4-10-C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-03-06
Authors: Yamasaki, M., Sumida, Y.
PDB entry 7ea5: Yeast Set2 bound to a nucleosome containing oncohistone mutations
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-03-06
Authors: Jing, H., Liu, Y.
PDB entry 7ea6: Crystal structure of TCR-017 ectodomain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2021-03-06
Authors: Nagae, M., Yamasaki, S.
PDB entry 7ea7: crystal structure of NAP1 LIR in complex with GABARAP
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2021-03-06
Authors: Fu, T., Pan, L.
PDB entry 7ea8: Human SETD2 bound to a nucleosome containing oncohistone mutations
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-03-06
Authors: Jing, H., Liu, Y.
PDB entry 7ea9: Crystal Structure of human lysyl-tRNA synthetase Y145H mutant
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-06
Authors: Wu, S., Hei, Z., Zheng, L., Zhou, J., Liu, Z., Wang, J., Fang, P.
PDB entry 7eaa: crystal structure of NDP52 SKICH domain in complex with RB1CC1 coiled-coil domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-06
Authors: Fu, T., Pan, L.
PDB entry 7ead: Crystal structure of beta-sheet cytochrome c prime from Thermus thermophilus.
Classification: ELECTRON TRANSPORT
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-03-07
Authors: Yoshimi, T., Fujii, S., Oki, H., Igawa, T., Adams, R.H., Ueda, K., Kawahara, K., Ohkubo, T., Hough, A.M., Sambongi, Y.
PDB entry 7eaf: Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-03-07
Authors: Huang, L., Lilley, D.M.J.
PDB entry 7eag: Crystal structure of the RAGATH-18 k-turn
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-07
Authors: Huang, L., Lilley, D.M.J.
PDB entry 7eah: Echovirus3 empty expanded particle
Classification: VIRUS
Source organism: Echovirus E3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-03-07
Authors: Feng, R.
PDB entry 7eai: Echovirus3 empty compacted particle
Classification: VIRUS
Source organism: Echovirus E3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-03-07
Authors: Feng, R.
PDB entry 7eaj: Echovirus3 empty expanded particle in complex with 5G3 fab
Classification: VIRUS
Source organism: Echovirus E3; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-03-07
Authors: Feng, R.
PDB entry 7eak: Echovirus3 full particle in complex with 5G3 fab
Classification: VIRUS
Source organism: Echovirus E3; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-03-07
Authors: Feng, R.
PDB entry 7eal: The structure of the A20-Binding Inhibitor of NF-kB 1 in complex with di-ubiquitin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-07
Authors: Lo, Y.C., Lin, S.C.
PDB entry 7eam: immune complex of SARS-CoV-2 RBD and cross-neutralizing antibody 7D6
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-03-07
Authors: Li, T.T., Gu, Y., Li, S.W.
PDB entry 7ean: immune complex of SARS-CoV-2 RBD and cross-neutralizing antibody 6D6
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2021-03-07
Authors: Li, T.T., Gu, Y., Li, S.W.
PDB entry 7eao: The structure of the A20-binding inhibitor of NF-kB 1 in complex with tri-ubiquitin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-03-07
Authors: Lo, Y.C., Lin, S.C.
PDB entry 7eap: Crystal structure of IpeA-XXXG complex
Classification: HYDROLASE
Source organism: Aspergillus oryzae (strain ATCC 42149 / RIB 40)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2021-03-08
Authors: Matsuzawa, T., Watanabe, M., Nakamichi, Y., Akita, H., Yaoi, K.
PDB entry 7eaq: DNA quadruplex composed of i-motif and Z-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2021-03-08
Authors: Kondo, J., Igarashi, Y.
PDB entry 7ear: A positively charged mutant Cry3Aa endotoxin
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-03-08
Authors: Yang, Z., Lee, M.M., Chan, M.K.
PDB entry 7eas: Crystal structure of human pyruvate dehydrogenase kinase 2 in complex with compound 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-03-08
Authors: Orita, T., Doi, S., Iwanaga, T., Adachi, T.
PDB entry 7eat: Crystal structure of human pyruvate dehydrogenase kinase 4 in complex with compound 1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-08
Authors: Orita, T., Doi, S., Iwanaga, T., Adachi, T.
PDB entry 7eau: SIB1, an effector of Colletotrichum orbiculare
Classification: TOXIN
Source organism: Colletotrichum orbiculare (strain 104-T / ATCC 96160 / CBS 514.97 / LARS 414 / MAFF 240422)
Experimental method: SOLUTION NMR
Deposited: 2021-03-08
Authors: Mori, M., Ohki, S., Kurita, J.
PDB entry 7eav: The X-ray crystallographic structure of glycogen debranching enzyme from Sulfolobus solfataricus STB09
Classification: HYDROLASE
Source organism: Saccharolobus solfataricus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.803 Å
Deposited: 2021-03-08
Authors: Li, Z.F., Ban, X.F., Tian, Y.X., Li, C.M., Cheng, L., Hong, Y., Gu, Z.B.
PDB entry 7eaw: Trehalase of Arabidopsis thaliana acid mutant -D380A trehalose complex
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-03-08
Authors: Taguchi, Y., Saburi, W., Yu, J., Imai, R., Yao, M., Mori, H.
PDB entry 7eax: Crystal complex of p53-V272M and antimony ion
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-03-08
Authors: Lu, M., Tang, Y.
PDB entry 7eay: DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-08
Authors: Kondo, J., Terashima, A., Yoshimura, A., Tada, Y., Ono, A.
PDB entry 7eaz: Cryo-EM structure of SARS-CoV-2 Spike D614G variant, one RBD-up conformation 1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-03-08
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.
PDB entry 7eb0: Cryo-EM structure of SARS-CoV-2 Spike D614G variant, one RBD-up conformation 2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-03-08
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.
PDB entry 7eb1: Solution NMR structure of the RRM domain of RNA binding protein RBM3 from homo sapiens
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2021-03-08
Authors: Boral, S., Roy, S., Basak, A.J., Maiti, S., Lee, W., De, S.
PDB entry 7eb2: Cryo-EM structure of human GABA(B) receptor-Gi protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-03-08
Authors: Shen, C., Mao, C., Xu, C., Jin, N., Zhang, H., Shen, D., Shen, Q., Wang, X., Hou, T., Rondard, P., Chen, Z., Pin, J., Zhang, Y., Liu, J.
PDB entry 7eb3: Cryo-EM structure of SARS-CoV-2 Spike D614G variant, one RBD-up conformation 3
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-03-08
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.
PDB entry 7eb4: Cryo-EM structure of SARS-CoV-2 Spike D614G variant, two RBD-up conformation 1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-03-08
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.
PDB entry 7eb5: Cryo-EM structure of SARS-CoV-2 Spike D614G variant, two RBD-up conformation 2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-03-08
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.
PDB entry 7eb6: Crystal structure of GTP-binding protein-like domain of AGAP1
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.014 Å
Deposited: 2021-03-09
Authors: Cheng, N., Zhang, H., Zhang, S., Ma, X., Meng, G.
PDB entry 7eb9: The structure of the A20-binding inhibitor of NF-kB 1 in complex with tetra-ubiquitin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-03-09
Authors: Lo, Y.C., Lin, S.C.
PDB entry 7eba: Co-crystal of kurarinone with sEH
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-03-09
Authors: Sun, C.P., Ma, X.C.
PDB entry 7ebb: Crystal structure of human pyruvate dehydrogenase kinase 4 in complex with compound 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-09
Authors: Orita, T., Doi, S., Iwanaga, T., Adachi, T.
PDB entry 7ebc: Crystal structure of Isocitrate lyase-1 from Saccaromyces cervisiae
Classification: LYASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-03-09
Authors: Hiragi, K., Nishio, K., Moriyama, S., Hamaguchi, T., Mizoguchi, A., Yonekura, K., Tani, K., Mizushima, T.
PDB entry 7ebd: Bacterial STING in complex with c-di-GMP
Classification: SIGNALING PROTEIN
Source organism: Prevotella corporis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-03-09
Authors: Ko, T.-P., Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 7ebe: Crystal structure of Isocitrate lyase-1 from Candida albicans
Classification: LYASE
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2021-03-09
Authors: Hiragi, K., Nishio, K., Moriyama, S., Hamaguchi, T., Mizoguchi, A., Yonekura, K., Tani, K., Mizushima, T.
PDB entry 7ebf: Cryo-EM structure of Isocitrate lyase-1 from Candida albicans
Classification: LYASE
Source organism: Candida albicans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2021-03-09
Authors: Hiragi, K., Nishio, K., Moriyama, S., Hamaguchi, T., Mizoguchi, A., Yonekura, K., Tani, K., Mizushima, T.
PDB entry 7ebg: Crystal structure of human pyruvate dehydrogenase kinase 4 in complex with compound 7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-03-09
Authors: Orita, T., Doi, S., Iwanaga, T., Adachi, T.
PDB entry 7ebh: Crystal structure of human pyruvate dehydrogenase kinase 2 in complex with compound 13
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2021-03-09
Authors: Orita, T., Doi, S., Iwanaga, T., Adachi, T.
PDB entry 7ebi: Chitin-specific solute binding protein from Vibrio harveyi co-crystalized with chitotetraose.
Classification: SUGAR BINDING PROTEIN
Source organism: Vibrio harveyi (strain 1DA3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-03-09
Authors: Kitaoku, Y., Ubonbal, P., Tran, L.T., Robinson, R.C., Suginta, W.
PDB entry 7ebj: Apo structure of the mouse Trim66 PHD-Bromo dual domain
Classification: GENE REGULATION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-03-09
Authors: Wang, Z., Jiang, J.
PDB entry 7ebk: Mouse Trim66 PHD-Bromo dual domain complexed with the H3(1-24)K9me3K18ac peptide
Classification: GENE REGULATION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-03-09
Authors: Wang, Z., Jiang, J.
PDB entry 7ebl: Bacterial STING in complex with c-di-GMP
Classification: SIGNALING PROTEIN
Source organism: Myroides sp. ZB35
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2021-03-10
Authors: Ko, T.-P., Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 7ebm: W363A mutant of Chitin-specific solute binding protein from Vibrio harveyi in complex with chitobiose.
Classification: SUGAR BINDING PROTEIN
Source organism: Vibrio harveyi (strain 1DA3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-10
Authors: Kitaoku, Y., Ubonbal, P., Tran, L.T., Robinson, R.C., Suginta, W.
PDB entry 7ebo: Crystal structure of a feruloyl esterase LP_0796 from Lactobacillus plantarum
Classification: HYDROLASE
Source organism: Lactiplantibacillus plantarum WCFS1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-10
Authors: Zhang, H.W., Wang, Y.L., Xin, F.J.
PDB entry 7ebp: The structural analysis of A.Muciniphila sulfatase
Classification: HYDROLASE
Source organism: Akkermansia muciniphila ATCC BAA-835
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-03-10
Authors: Bao, R., Li, C.C., Tang, X.Y., Zhu, Y.B., Song, Y.J., Zhao, N.L., Huang, Q., Mou, X.Y., Luo, G.H., Liu, T.G.