LiteFold/PDB huggingface dataset:
PDB entry 8c4d: N-acetylmuramoyl-L-alanine amidase from Enterococcus faecium prophage genome
Classification: ANTIMICROBIAL PROTEIN
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-01-03
Authors: Papageorgiou, A.C., Premetis, G.E., Labrou, N.E.
PDB entry 8c4e: F-actin decorated by SipA426-685
Classification: CELL INVASION
Source organism: Gallus gallus; Salmonella
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-01-03
Authors: Yuan, B., Wald, J., Marlovits, T.C.
PDB entry 8c4f: Small molecule amidine soak in 14-3-3/ERa (AZ037)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-01-03
Authors: Visser, E.J., Sijbesma, E., Ottmann, C.
PDB entry 8c4g: Small molecule amidine soak in 14-3-3/ERa (AZ132)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-01-03
Authors: Visser, E.J., Sijbesma, E., Ottmann, C.
PDB entry 8c4h: CryoEM structure of the Hendra henipavirus nucleocapsid sauronoid assembly multimer
Classification: VIRAL PROTEIN
Source organism: Escherichia coli BL21(DE3); Hendra henipavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.485 Å
Deposited: 2023-01-04
Authors: Passchier, T.C., Maskell, D.P., Edwards, T.A., Barr, J.N.
PDB entry 8c4i: Ligand-free Crystal Structure of the decameric Sulfofructose Transaldolase BmSF-TAL
Classification: TRANSFERASE
Source organism: Bacillus aryabhattai
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-01-04
Authors: Snow, A.J.D., Sharma, M., Davies, G.J.
PDB entry 8c4j: CdaA-compound 4 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-01-04
Authors: Neumann, P., Ficner, R.
PDB entry 8c4l: Ferric-siderophore reduction in Shewanella biscestrii: Structural and functional characterization of SbiSIP reveals unforeseen specificity
Classification: METAL BINDING PROTEIN
Source organism: Shewanella bicestrii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-01-04
Authors: Trindade, I.B., Matias, P., Moe, E., Louro, R.O.
PDB entry 8c4m: CdaA-Adenosine complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-01-04
Authors: Neumann, P., Ficner, R.
PDB entry 8c4n: CdaA-AMP complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-01-04
Authors: Neumann, P., Ficner, R.
PDB entry 8c4o: CdaA-ATP complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-01-04
Authors: Neumann, P., Ficner, R.
PDB entry 8c4p: CdaA-compound 7 complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-01-04
Authors: Neumann, P., Ficner, R.
PDB entry 8c4q: CdaA-Apo
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-01-04
Authors: Neumann, P., Ficner, R.
PDB entry 8c4r: CdaA-adenine complex
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-01-04
Authors: Neumann, P., Ficner, R.
PDB entry 8c4s: Apo Hantaan virus polymerase core
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-01-04
Authors: Durieux trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8c4t: Hantaan virus polymerase bound to its 5' viral RNA
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-01-04
Authors: Durieux trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8c4u: Hantaan virus polymerase in replication pre-initiation state
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-01-04
Authors: Durieux trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8c4v: Hantaan virus polymerase in replication elongation state
Classification: VIRAL PROTEIN
Source organism: Hantaan virus 76-118; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-01-04
Authors: Durieux trouilleton, Q., Arragain, B., Malet, H.
PDB entry 8c4w: Crystal structure of rat autotaxin and compound MEY-002
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-01-05
Authors: Eymery, M.C., McCarthy, A.A.
PDB entry 8c4x: PAM Protease
Classification: HYDROLASE
Source organism: Actinomadura keratinilytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-01-05
Authors: Nomme, J., Gavalda, S., Cioci, G., Guicherd, M., Marty, A., Duquesne, S., Ben Khaled, M.
PDB entry 8c4y: SFX structure of FutA bound to Fe(III)
Classification: METAL BINDING PROTEIN
Source organism: Prochlorococcus marinus subsp. pastoris str. CCMP1986
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-05
Authors: Bolton, R., Tews, I.
PDB entry 8c4z: ProteinT protease, inactive mutant S224A
Classification: HYDROLASE
Source organism: Thermus sp. Rt41A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-01-05
Authors: Nomme, J., Gavalda, S., Cioci, G., Guicherd, M., Marty, A., Duquesne, S., Ben Khaled, M.
PDB entry 8c50: Pontibacter korlensis curli subunit CsgA
Classification: PROTEIN FIBRIL
Source organism: Pontibacter korlensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2023-01-05
Authors: Remaut, H., Sleutel, M., Pradhan, B.
PDB entry 8c51: Trypanosoma brucei IMP dehydrogenase (cyto) crystallized in High Five cells revealing native ligands ATP, GDP and phosphate. Diffraction data collection at 100 K in cellulo
Classification: TRANSFERASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-01-06
Authors: Lahey-Rudolph, J.M., Schoenherr, R., Boger, J., Harms, M., Kaiser, J., Nachtschatt, S., Wobbe, M., Duden, R., Koenig, P., Bourenkov, G., Schneider, T., Redecke, L.
PDB entry 8c53: Trypanosoma brucei IMP dehydrogenase (ori) crystallized in High Five cells reveals native ligands ATP, GDP and phosphate. Diffraction data collection at 100 K in cellulo; CrystFEL processing
Classification: TRANSFERASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-01-06
Authors: Lahey-Rudolph, J.M., Schoenherr, R., Boger, J., Harms, M., Kaiser, J., Nachtschatt, S., Wobbe, M., Duden, R., Bourenkov, G., Schneider, T., Redecke, L.
PDB entry 8c54: Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Classification: OXIDOREDUCTASE
Source organism: Rhizobium leguminosarum bv. trifolii SRDI565
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2023-01-06
Authors: Sharma, M., Meek, R.W., Armstrong, Z., Blaza, J.N., Alhifthi, A., Li, J., Goddard-Borger, E.D., Williams, S.J., Davies, G.J.
PDB entry 8c56: CpG specific M.MpeI methyltransferase crystallized in the presence of 2'-deoxy-5-methylzebularine (5mZ) and 5-methylcytosine containing dsDNA
Classification: TRANSFERASE
Source organism: Malacoplasma penetrans HF-2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-01-06
Authors: Wojciechowski, M., Czapinska, H., Krwawicz, J., Rafalski, D., Bochtler, M.
PDB entry 8c57: CpG specific M.MpeI methyltransferase crystallized in the presence of 5,6-dihydro-5-azacytosine (converted to 5m-dhaC) and 5-methylcytosine containing dsDNA
Classification: TRANSFERASE
Source organism: Malacoplasma penetrans HF-2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-01-06
Authors: Wojciechowski, M., Czapinska, H., Krwawicz, J., Rafalski, D., Bochtler, M.
PDB entry 8c58: CpG specific M.MpeI methyltransferase crystallized in the presence of 5-hydroxycytosine and 5-methylcytosine containing dsDNA
Classification: TRANSFERASE
Source organism: Malacoplasma penetrans HF-2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-01-06
Authors: Wojciechowski, M., Czapinska, H., Krwawicz, J., Rafalski, D., Bochtler, M.
PDB entry 8c59: CpG specific M.MpeI methyltransferase crystallized in the presence of 5-bromocytosine (converted to 5mC) and 5-methylcytosine containing dsDNA
Classification: TRANSFERASE
Source organism: Malacoplasma penetrans HF-2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-01-06
Authors: Wojciechowski, M., Czapinska, H., Krwawicz, J., Rafalski, D., Bochtler, M.
PDB entry 8c5b: Crystal Structure of Penicillin-binding Protein 3 (PBP3) from Staphylococcus Epidermidis
Classification: PENICILLIN-BINDING PROTEIN
Source organism: Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-01-06
Authors: Schwinzer, M., Brognaro, H., Rohde, H., Betzel, C.
PDB entry 8c5c: microtubule decorated with tubulin oligomers in presence of APC C-terminal domain. (here only map corresponding to the 13-pf microtubule is represented)
Classification: CELL CYCLE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-01-06
Authors: Serre, L., Arnal, I.
PDB entry 8c5d: Glutathione transferase P1-1 from Mus musculus
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-01-06
Authors: Papageorgiou, A.C.
PDB entry 8c5e: E. coli NfsB-T41Q/N71S/F124T mutant bound to nicotinic acid
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-01-06
Authors: White, S.A., Hyde, E.I., Day, M.A.
PDB entry 8c5f: E. coli NfsB-T41Q/N71S/F124T mutant bound to acetate
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-07
Authors: White, S.A., Hyde, E.I., Day, M.A.
PDB entry 8c5g: Structure of human Neuropilin-1 b1b2 domains in complex with Chlorotoxin (Leiurus quinquestriatus)
Classification: TOXIN
Source organism: Homo sapiens; Leiurus quinquestriatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-01-09
Authors: Boros, E., Ecsedi, P., Szakacs, D., Nyitray, L.
PDB entry 8c5h: NbSyt1 anti-(rat Synaptotagmin-1) nanobody bound to target cytosolic domain of Synaptotagmin-1
Classification: METAL BINDING PROTEIN
Source organism: Rattus norvegicus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-01-09
Authors: Martinez-Carranza, M., Stenmark, P.
PDB entry 8c5i: Cyanide dihydratase from Bacillus pumilus C1 variant - Q86R,H305K,H308K,H323K
Classification: HYDROLASE
Source organism: Bacillus pumilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2023-01-09
Authors: Mulelu, A.E., Reitz, J., van Rooyen, J., Scheffer, M., Frangakis, A.S., Dlamini, L.S., Woodward, J.D., Benedik, M.J., Sewell, B.T.
PDB entry 8c5j: Spatial structure of Lch-alpha peptide from two-component lantibiotic system Lichenicidin VK21
Classification: ANTIBIOTIC
Source organism: Bacillus licheniformis
Experimental method: SOLUTION NMR
Deposited: 2023-01-09
Authors: Mineev, K.S., Paramonov, A.S., Arseniev, A.S., Ovchinnikova, T.V., Shenkarev, Z.O.
PDB entry 8c5k: HEX-1 (in cellulo, in situ) crystallized and diffracted in High Five cells. Growth and SX data collection at 296 K on CrystalDirect plates
Classification: STRUCTURAL PROTEIN
Source organism: Neurospora crassa OR74A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-01-09
Authors: Lahey-Rudolph, J.M., Schoenherr, R., Boger, J., Harms, M., Kaiser, J., Nachtschatt, S., Wobbe, M., Duden, R., Koenig, P., Bourenkov, G., Schneider, T., Redecke, L.
PDB entry 8c5l: NR2F6 ligand binding domain in complex with NSD1 peptide
Classification: TRANSCRIPTION
Source organism: Escherichia coli K-12; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-01-09
Authors: Oerlemans, G.J.M., van den Oetelaar, M.C.M., Brunsveld, L.
PDB entry 8c5m: SARS-CoV-2 nsp10-16 methyltransferase in complex with MTA
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-09
Authors: Kremling, V., Sprenger, J., Oberthuer, D., Falke, S.
PDB entry 8c5n: Sub-atomic resolution structure of the chitin-binding protein D (CbpD) from Pseudomonas aeruginosa
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 0.75 Å
Deposited: 2023-01-09
Authors: Cordara, G., Krengel, U., Golten, O., Vaaje-Kolstad, G., Vinther Soerensen, H.
PDB entry 8c5o: Crystal Structure of Penicillin-binding Protein 3 (PBP3) from Staphylococcus Epidermidis in complex with Vaborbactam
Classification: PENICILLIN-BINDING PROTEIN
Source organism: Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-01-10
Authors: Schwinzer, M., Brognaro, H., Rohde, H., Betzel, C.
PDB entry 8c5p: E. coli NfsB mutant N71S T41L with acetate
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-01-10
Authors: Day, M.A., White, S.A., Hyde, E.I.
PDB entry 8c5q: CK2 kinase bound to inhibitor AB668
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-01-10
Authors: Krimm, I., Guichou, J.F.
PDB entry 8c5r: Omicron B.1.1.529 2 RBD up conformation
Classification: VIRAL PROTEIN
Source organism: Alphacoronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-01-10
Authors: Raghavan, S.S.R., Walker, M.R., Salanti, A., Barfod, L.K., Wang, K.T.
PDB entry 8c5s: Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 7-mer RNA, pppGpGpUpApApApU (IC7)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-01-10
Authors: Goovaerts, Q., Shen, J., Patel, S.S., Das, K.
PDB entry 8c5u: Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG (IC8)
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-01-10
Authors: Goovaerts, Q., Shen, J., Patel, S.S., Das, K.
PDB entry 8c5v: Chemotaxis core signalling unit from E protein lysed E. coli cells
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2023-01-10
Authors: Cassidy, C.K., Qin, Z., Zhang, P.
PDB entry 8c5w: Crystal Structure of Penicillin-binding Protein 3 (PBP3) from Staphylococcus Epidermidis in complex with Cefotaxime
Classification: PENICILLIN-BINDING PROTEIN
Source organism: Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-01-10
Authors: Schwinzer, M., Brognaro, H., Rohde, H., Betzel, C.
PDB entry 8c5x: Double mutant A(L37)C/S(L99)C structure of Photosynthetic Reaction Center From Cereibacter sphaeroides strain RV
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides 2.4.1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-01-10
Authors: Gabdulkhakov, A., Selikhanov, G., Fufina, T., Vasilieva, L., Atamas, A., Uhimchuk, D.
PDB entry 8c5y: RPA tetrameric supercomplex from Pyrococcus abyssi
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-01-10
Authors: Madru, C., Martinez-Carranza, M., Legrand, P., Sauguet, L.
PDB entry 8c5z: RPA tetrameric supercomplex with AROD-OB-1
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus abyssi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-01-10
Authors: Madru, C., Martinez-Carranza, M., Legrand, P., Sauguet, L.
PDB entry 8c60: Cryo-EM structure of the human SIN3B full-length complex at 3.4 Angstrom resolution
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-10
Authors: Alfieri, C., Wan, S.M., Muhammad, R.
PDB entry 8c61: Structure of USP54 in complex with Lys63-linked diUbiquitin-PA
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-01-11
Authors: Wendrich, K., Gersch, M.
PDB entry 8c62: Crystal structure of cisplatin/B-DNA adduct
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-01-11
Authors: Troisi, R., Tito, G., Ferraro, G., Sica, F., Merlino, A.
PDB entry 8c63: Crystal structure of arsenoplatin-1/B-DNA adduct obtained upon 4 h of soaking
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-01-11
Authors: Troisi, R., Tito, G., Ferraro, G., Sica, F., Merlino, A.
PDB entry 8c64: Crystal structure of arsenoplatin-1/B-DNA adduct obtained upon 48 h of soaking
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-01-11
Authors: Troisi, R., Tito, G., Ferraro, G., Sica, F., Merlino, A.
PDB entry 8c65: Crystal structure of cutinase AdCut from Acidovorax delafieldii (PBS depolymerase)
Classification: HYDROLASE
Source organism: Acidovorax delafieldii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.491 Å
Deposited: 2023-01-11
Authors: Zahn, M., Clark, M.
PDB entry 8c66: Structure of the Reconstructed Ancestor of Phenolic Acid Decarboxylase AncPAD55
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-11
Authors: Schruefer, A., Mokos, D., Gruber, K., Daniel, B.
PDB entry 8c67: Crystal structure of Ab25 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-01-11
Authors: Nyblom, M., Izadi, A., Tang, D., Bahnan, W., Happonen, L., Malmstroem, J., Shannon, O., Malmstroem, L., Nordenfelt, P.
PDB entry 8c68: CRYSTAL STRUCTURE OF ODORANT BINDING PROTEIN 4 FROM ANOPHELES GAMBIAE (AGAMOBP4) AT PH 4.6
Classification: TRANSPORT PROTEIN
Source organism: Anopheles gambiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-01-11
Authors: Tsitsanou, K.E., Drakou, C.E., Zographos, S.E.
PDB entry 8c69: Light SFX structure of D.m(6-4)photolyase at 100 microsecond time delay
Classification: FLAVOPROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-11
Authors: Cellini, A., Kumar, M., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carrillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Ozerovi, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.
PDB entry 8c6a: Light SFX structure of D.m(6-4)photolyase at 1ps time delay
Classification: FLAVOPROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-11
Authors: Cellini, A., Kumar, M., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carrillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Ozerovi, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.
PDB entry 8c6b: Light SFX structure of D.m(6-4)photolyase at 20ps time delay
Classification: FLAVOPROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-11
Authors: Cellini, A., Kumar, M., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carrillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Ozerovi, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.
PDB entry 8c6c: Light SFX structure of D.m(6-4)photolyase at 300ps time delay
Classification: FLAVOPROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-11
Authors: Cellini, A., Kumar, M., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carrillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Ozerovi, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.
PDB entry 8c6d: Production of antigenically stable enterovirus A71 virus-like particles in Pichia pastoris as a vaccine candidate.
Classification: VIRUS LIKE PARTICLE
Source organism: Enterovirus A71
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-01-11
Authors: Kingston, N.J., Snowden, J.S., Stonehouse, N.J., Rowlands, D.J., Hogle, J.M.
PDB entry 8c6e: CRYSTAL STRUCTURE OF ODORANT BINDING PROTEIN 4 FROM ANOPHELES GAMBIAE (AGAMOBP4) AT PH 8.5
Classification: TRANSPORT PROTEIN
Source organism: Anopheles gambiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-01-11
Authors: Tsitsanou, K.E., Drakou, C.E., Zographos, S.E.
PDB entry 8c6f: Light SFX structure of D.m(6-4)photolyase at 400fs time delay
Classification: FLAVOPROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-11
Authors: Cellini, A., Kumar, M., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carrillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Ozerovi, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.
PDB entry 8c6g: CRYSTAL STRUCTURE OF ODORANT BINDING PROTEIN 4 FROM ANOPHELES GAMBIAE (AGAMOBP4) AT PH 6.5
Classification: TRANSPORT PROTEIN
Source organism: Anopheles gambiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-01-11
Authors: Tsitsanou, K.E., Drakou, C.E., Zographos, S.E.
PDB entry 8c6h: Light SFX structure of D.m(6-4)photolyase at 2ps time delay
Classification: FLAVOPROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-11
Authors: Cellini, A., Kumar, M., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carrillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Ozerovi, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.
PDB entry 8c6i: TMEM2 ectodomain
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-01-11
Authors: Hohenester, E.
PDB entry 8c6j: Human spliceosomal PM5 C* complex
Classification: SPLICING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-12
Authors: Dybkov, O., Kastner, B., Luehrmann, R.
PDB entry 8c6k: Double mutant A(L53)C/I(L64)C structure of Photosynthetic Reaction Center From Cereibacter sphaeroides strain RV
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides 2.4.1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2023-01-12
Authors: Gabdulkhakov, A., Selikhanov, G., Fufina, T., Vasilieva, L., Atamas, A., Uhimchuk, D.
PDB entry 8c6l: Human protein kinase CK2 alpha in complex with CK2-TN01
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-12
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8c6m: Human protein kinase CK2 alpha in complex with CK2-TN02
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-12
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8c6n: Human protein kinase CK2 alpha in complex with CK2-TN03
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-01-12
Authors: Dalle Vedove, A., Cazzanelli, G., Lolli, G.
PDB entry 8c6o: Crystal Structure of H64F obelin mutant from Obelia longissima at 2.2 Angstrom resolution
Classification: LUMINESCENT PROTEIN
Source organism: Obelia longissima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-12
Authors: Natashin, P.V., Burakova, L.P., Kovaleva, M.I., Schevtsov, M.B., Dmitrieva, D.A., Eremeeva, E.V., Markova, S.V., Mishin, A.V., Borshchevskiy, V.I., Vysotski, E.S.
PDB entry 8c6p: Fragment screening hit I bound to endothiapepsin
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-01-12
Authors: Wiese, J.N., Buehrmann, M., Mueller, M.P., Rauh, D.
PDB entry 8c6q: Fragment screening hit II bound to endothiapepsin
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-01-12
Authors: Wiese, J.N., Buehrmann, M., Mueller, M.P., Rauh, D.
PDB entry 8c6r: PBP AccA from A. tumefaciens Bo542 in apoform 4
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.884 Å
Deposited: 2023-01-12
Authors: Morera, S., Vigouroux, A.
PDB entry 8c6s: Fragment screening hit III bound to endothiapepsin
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-01-12
Authors: Wiese, J.N., Buehrmann, M., Mueller, M.P., Rauh, D.
PDB entry 8c6t: Fragment screening hit IV bound to endothiapepsin
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-01-12
Authors: Wiese, J.N., Buehrmann, M., Mueller, M.P., Rauh, D.
PDB entry 8c6u: PBP AccA-G145YG440Q mutant from A. tumefaciens Bo542 in apoform 4
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.843 Å
Deposited: 2023-01-12
Authors: Morera, S., Vigouroux, A., Legrand, P.
PDB entry 8c6v: The RNA silencing suppressor P8 from High-Plains Wheat Mosaic Virus
Classification: VIRAL PROTEIN
Source organism: Emaravirus tritici
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-01-12
Authors: Hamo, S., Dessau, M.
PDB entry 8c6w: PBP AccA from A. tumefaciens Bo542 in apoform 1
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-01-12
Authors: Morera, S., Vigouroux, A., Legrand, P.
PDB entry 8c6y: PBP AccA from A. tumefaciens Bo542 in apoform 2
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2023-01-12
Authors: Morera, S., Vigouroux, A., legrand, P.
PDB entry 8c6z: necrotic enteritis associated Clostridium p. chitinase F8UNI4 in complex with inhibitor bisdionin C
Classification: HYDROLASE
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-01-12
Authors: Bloch, Y., Savvides, S.N.
PDB entry 8c70: Pyrrolidine fragment 1 bound to endothiapepsin
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-01-12
Authors: Wiese, J.N., Buehrmann, M., Mueller, M.P., Rauh, D.
PDB entry 8c71: Pyrrolidine fragment 5b bound to endothiapepsin
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-01-12
Authors: Wiese, J.N., Buehrmann, M., Mueller, M.P., Rauh, D.
PDB entry 8c72: Pyrrolidine fragment 10b bound to endothiapepsin
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-01-12
Authors: Wiese, J.N., Buehrmann, M., Mueller, M.P., Rauh, D.
PDB entry 8c73: Dark state 1.8 Angstrom crystal structure of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under aerobic condition form ll
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-01-12
Authors: Rios-Santacruz, R., Colletier, J.P., Schiro, G., Weik, M.
PDB entry 8c74: Pyrrolidine fragment 10d bound to endothiapepsin
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-01-12
Authors: Wiese, J.N., Buehrmann, M., Mueller, M.P., Rauh, D.
PDB entry 8c75: PBP AccA from A. tumefaciens Bo542 in apoform 3
Classification: TRANSPORT PROTEIN
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.673 Å
Deposited: 2023-01-12
Authors: Morera, S., Vigouroux, A., Legrand, P.
PDB entry 8c76: Light-state 2.5 Angstrom wild-type X-ray crystal structure of the cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under aerobic conditions from a form 2 crystal illuminated during 5 s
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-01-12
Authors: Rios-Santacruz, R., Colletier, J.P., Schiro, G., Weik, M.
PDB entry 8c77: Human cathepsin L after reaction with the thiocarbazate inhibitor CID 16725315
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-01-12
Authors: Falke, S., Lieske, J., Guenther, S., Reinke, P.Y.A., Ewert, W., Loboda, J., Karnicar, K., Usenik, A., Lindic, N., Sekirnik, A., Chapman, H.N., Hinrichs, W., Turk, D., Meents, A.
PDB entry 8c78: Crystal structure of human BCL6 BTB domain in complex with compound CCT374705
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-13
Authors: Le Bihan, Y.-V., van Montfort, R.L.M.
PDB entry 8c79: Crystal structure of Leishmania donovani 6-Phosphogluconate Dehydrogenase complexed with NADPH
Classification: OXIDOREDUCTASE
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-01-13
Authors: Fritz-Wolf, K., Berneburg, I., Rahlfs, S., Becker, K.
PDB entry 8c7a: Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-01-14
Authors: Wang, B., Zalar, M., Plavec, J., Sket, P.
PDB entry 8c7b: Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-01-14
Authors: Wang, B., Zalar, M., Plavec, J., Sket, P.
PDB entry 8c7c: Double mutant V(M84)C/A(L278)C structure of Photosynthetic Reaction Center From Cereibacter sphaeroides strain RV
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides 2.4.1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-01-14
Authors: Gabdulkhakov, A., Selikhanov, G., Fufina, T., Vasilieva, L., Atamas, A., Uhimchuk, D.
PDB entry 8c7d: Structure of the GEF Kalirin DH2 Domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-01-14
Authors: Callens, M.C., Thompson, A.P., Gray, J.L., Bountra, C., von Delft, F., Brennan, P.E.
PDB entry 8c7e: Serendipitous cyanase structure from Serratia-like contamination
Classification: LYASE
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-01-14
Authors: Bloch, Y., Skladanowska, K., Savvides, S.N.
PDB entry 8c7f: Crystal structure of beta-xylosidase mutant (D281N, E517Q) from Thermotoga maritima in complex with xylopentaose
Classification: HYDROLASE
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-01-15
Authors: Gloster, T.M., Foltanyi, F.
PDB entry 8c7g: Drosophila melanogaster Rab7 GEF complex Mon1-Ccz1-Bulli
Classification: ENDOCYTOSIS
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-01-15
Authors: Schaefer, J., Herrmann, E., Kuemmel, D., Moeller, A.
PDB entry 8c7h: Cryo-EM Map of the latTGF-beta LHG-10 Fab complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-16
Authors: Ebenhoch, R., Nar, H.
PDB entry 8c7i: Crystal structure of the PS2 assembly factor Psb32 from the cyanobactium Thermosyncechococcus vestitus (formerly elongatus)
Classification: STRUCTURAL PROTEIN
Source organism: Aequorea victoria; Thermosynechococcus vestitus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2023-01-16
Authors: Liauw, P., Gasper, R., Nowaczyk, M.M., Hofmann, E.
PDB entry 8c7j: Phage display derived serum albumin binding knob domain engineered within a novel VH framework 3 bispecific antibody format
Classification: IMMUNE SYSTEM
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-16
Authors: Adams, R., Macpherson, A.
PDB entry 8c7k: YdaS from E. coli O157:H7 cryptic prophage CP-933P
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O157:H7
Experimental method: SOLUTION NMR
Deposited: 2023-01-16
Authors: Prolic-Kalinsek, M., Volkov, A.N., Loris, R.
PDB entry 8c7l: Serendipitous structure of OmpF contaminant in space group P21.
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2023-01-16
Authors: Bloch, Y., Theunissen, S., Savvides, S.N.
PDB entry 8c7m: Interleukin 12 receptor subunit beta-1 Fn domains in complex with antagonistic FAb fragment.
Classification: CYTOKINE
Source organism: Homo sapiens; Homo sapiens x Mus musculus hybrid cell line
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2023-01-16
Authors: Bloch, Y., Savvides, S.N.
PDB entry 8c7o: Unliganded transcriptional pleiotropic repressor CodY from Staphylococcus aureus
Classification: TRANSCRIPTION
Source organism: Staphylococcus aureus (strain USA300)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-01-16
Authors: Hainzl, T., Sauer-Eriksson, A.E.
PDB entry 8c7p: Tagless BtuM in complex with cyanocobalamin
Classification: TRANSPORT PROTEIN
Source organism: Thiobacillus denitrificans ATCC 25259
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-01-16
Authors: Martinez-Felices, J.M., Slotboom, D.J.
PDB entry 8c7r: Crystal structure of rat autotaxin and compound MEY-003
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2023-01-17
Authors: Eymery, M.C., McCarthy, A.A.
PDB entry 8c7s: Transcriptional pleiotropic repressor CodY from Staphylococcus aureus in complex with Ile, GTP, and a 30-bp DNA fragment encompassing two overlapping binding sites
Classification: TRANSCRIPTION
Source organism: Staphylococcus aureus (strain USA300); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-01-17
Authors: Hainzl, T., Sauer-Eriksson, A.E.
PDB entry 8c7t: Unliganded transcriptional pleiotropic repressor CodY from Enterococcus faecalis
Classification: TRANSCRIPTION
Source organism: Enterococcus faecalis (strain ATCC 700802 / V583)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-01-17
Authors: Hainzl, T., Sauer-Eriksson, A.E.
PDB entry 8c7u: Transcriptional pleiotropic repressor CodY from Enterococcus faecalis in complex with Leu and a 30-bp DNA fragment encompassing two overlapping binding sites
Classification: TRANSCRIPTION
Source organism: Enterococcus faecalis (strain ATCC 700802 / V583); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-01-17
Authors: Hainzl, T., Sauer-Eriksson, A.E.
PDB entry 8c7v: Phage display derived serum albumin binding knob domain engineered within a novel VH framework 3 bispecific antibody format
Classification: IMMUNE SYSTEM
Source organism: Cricetulus griseus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-01-17
Authors: Adams, R., Macpherson, A.
PDB entry 8c7w: Crystal structure of the ACVR1 (ALK2) kinase in complex with the compound M4K2304
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2023-01-17
Authors: Cros, J., Williams, E.P., Sweeney, M.N., Smil, D., Gonzalez-Alvarez, H., Al-awar, R., Bullock, A.N.
PDB entry 8c7x: Crystal structure of BRAF in complex with a hybrid compound 6
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-01-17
Authors: Chaikuad, A., Bonnet, P., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8c7y: Crystal structure of BRAF V600E in complex with a hybrid compound 6
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-01-17
Authors: Chaikuad, A., Bonnet, P., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8c7z: Crystal structure of the ACVR1 (ALK2) kinase in complex with the compound M4K2308
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-01-18
Authors: Cros, J., Williams, E.P., Sweeney, M.N., Smil, D., Gonzalez-Alvarez, H., Al-awar, R., Bullock, A.N.
PDB entry 8c80: Cryo-EM structure of the yeast SPT-Orm1-Monomer complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-18
Authors: Schaefer, J., Koerner, C., Parey, K., Januliene, D., Moeller, A., Froehlich, F.
PDB entry 8c81: Cryo-EM structure of the yeast SPT-Orm1-Sac1 complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-01-18
Authors: Schaefer, J., Koerner, C., Parey, K., Januliene, D., Moeller, A., Froehlich, F.
PDB entry 8c82: Cryo-EM structure of the yeast SPT-Orm1-Dimer complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-18
Authors: Schaefer, J., Koerner, C., Parey, K., Januliene, D., Moeller, A., Froehlich, F.
PDB entry 8c83: Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-01-18
Authors: Ikeuchi, K., Buschauer, R., Cheng, J., Berninghausen, O., Becker, T., Beckmann, R.
PDB entry 8c84: Crystal structure of MADS-box/MEF2D N-terminal domain complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-18
Authors: Chinellato, M., Carli, A., Perin, S., Mazzoccato, Y., Di Giorgio, E., Brancolini, C., Angelini, A., Cendron, L.
PDB entry 8c85: Crystal structure of human transthyretin in complex with 3-O-methyltolcapone analogue 1
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2023-01-18
Authors: Poonsiri, T., Benini, S., Loconte, V., Cianci, M.
PDB entry 8c86: Crystal structure of human transthyretin in complex with 3-O-methyltolcapone analogue 2
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-01-18
Authors: Poonsiri, T., Benini, S., Loconte, V., Cianci, M.
PDB entry 8c87: Double mutant A(L172)C/L(L246)C structure of Photosynthetic Reaction Center From Cereibacter sphaeroides strain RV
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides 2.4.1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-01-19
Authors: Gabdulkhakov, A., Selikhanov, G., Fufina, T., Vasilieva, L., Atamas, A., Yukhimchuk, D.
PDB entry 8c88: Double mutant G(M19)C/T(L214)C structure of Photosynthetic Reaction Center From Cereibacter sphaeroides strain RV
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides 2.4.1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-01-19
Authors: Gabdulkhakov, A., Selikhanov, G., Fufina, T., Vasilieva, L., Atamas, A., Yukhimchuk, D.
PDB entry 8c89: SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.41 Å
Deposited: 2023-01-19
Authors: Modrego, A., Carlero, D., Bueno-Carrasco, M.T., Santiago, C., Carolis, C., Arranz, R., Blanco, J., Magri, G.
PDB entry 8c8a: The NMR structure of the MAX28 effector from Magnaporthe oryzae
Classification: UNKNOWN FUNCTION
Source organism: Pyricularia oryzae 70-15
Experimental method: SOLUTION NMR
Deposited: 2023-01-19
Authors: Lahfa, M., Padilla, A., de Guillen, K., Kroj, T., Roumestand, C., Barthe, P.
PDB entry 8c8b: Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 48).
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-01-19
Authors: Yosaatmadja, Y., Newman, J.A., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.
PDB entry 8c8c: Crystal Structure of Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha (PI5P4Ka) bound to an inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.096 Å
Deposited: 2023-01-19
Authors: Harborne, S.P.D., Howard, T.D., Ogg, D.T.
PDB entry 8c8d: Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 44).
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-01-19
Authors: Yosaatmadja, Y., Newman, J.A., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.
PDB entry 8c8e: Crystal structure of phi3T_93 L23D mutant
Classification: VIRAL PROTEIN
Source organism: Bacillus phage phi3T
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-19
Authors: Zamora-Caballero, S., Marina, A.
PDB entry 8c8f: Crystal structure of the E. coli maltodextrin-binding protein
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli BL21
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-01-19
Authors: Marquez Espinoza, A., Rodrigues, M.J., Olieric, V., Freisinger, E.
PDB entry 8c8g: Cryo-EM structure of BoNT/Wo-NTNH complex
Classification: TOXIN
Source organism: Weissella oryzae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-01-20
Authors: Kosenina, S., Skerlova, J., Stenmark, P.
PDB entry 8c8h: Cryo EM structure of the vaccinia complete RNA polymerase complex lacking the capping enzyme
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus GLV-1h68
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2023-01-20
Authors: Grimm, G., Bartuli, J., Fischer, U.
PDB entry 8c8i: Human dUTPase in complex with a potent proteinaceous inhibitor (Stl)
Classification: HYDROLASE
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-01-20
Authors: Kohegyi, B.K., Nyiri, K., Vertessy, B.G.
PDB entry 8c8j: Long Interspersed Nuclear Element 1 (LINE-1) reverse transcriptase ternary complex with hybrid duplex and dTTP
Classification: REPLICATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-01-20
Authors: Nichols, C.E., Walpole, T.B., Baldwin, E.
PDB entry 8c8k: In vitro structure of the Nitrosopumilus maritimus S-layer - Six-fold symmetry (C6)
Classification: STRUCTURAL PROTEIN
Source organism: Nitrosopumilus maritimus SCM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-01-20
Authors: von Kuegelgen, A., Bharat, T.
PDB entry 8c8l: In vitro structure of the Nitrosopumilus maritimus S-layer - Two-fold symmetry (C2)
Classification: STRUCTURAL PROTEIN
Source organism: Nitrosopumilus maritimus SCM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2023-01-20
Authors: von Kuegelgen, A., Bharat, T.
PDB entry 8c8m: In vitro structure of the Nitrosopumilus maritimus S-layer - Composite map between two and six-fold symmetrised
Classification: STRUCTURAL PROTEIN
Source organism: Nitrosopumilus maritimus SCM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-01-20
Authors: von Kuegelgen, A., Bharat, T.
PDB entry 8c8n: In situ structure of the Nitrosopumilus maritimus S-layer - Two-fold symmetry (C2)
Classification: STRUCTURAL PROTEIN
Source organism: Nitrosopumilus maritimus SCM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-20
Authors: von Kuegelgen, A., Bharat, T.
PDB entry 8c8o: In situ structure of the Nitrosopumilus maritimus S-layer - Six-fold symmetry (C6)
Classification: STRUCTURAL PROTEIN
Source organism: Nitrosopumilus maritimus SCM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-20
Authors: von Kuegelgen, A., Bharat, T.
PDB entry 8c8p: Structure of the SARS-CoV-2 spike glycoprotein in complex with the 10D12 heavy-chain-only antibody (local refinement)
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-01-20
Authors: Serna Martin, I., Hurdiss, D.L.
PDB entry 8c8q: Cytochrome c oxidase from Schizosaccharomyces pombe
Classification: MEMBRANE PROTEIN
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-01-20
Authors: Moe, A., Adelroth, P., Brzezinski, P., Nasvik Ojemyr, L.
PDB entry 8c8r: In situ structure of the Nitrosopumilus maritimus S-layer - Composite map between C2 and C6
Classification: STRUCTURAL PROTEIN
Source organism: Nitrosopumilus maritimus SCM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-01-20
Authors: von Kuegelgen, A., Bharat, T.
PDB entry 8c8s: Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 21).
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-01-20
Authors: Yosaatmadja, Y., Newman, J.A., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.
PDB entry 8c8t: cryo-EM structure of BG505 SOSIP.664 HIV-1 Env trimer in complex with bNAbs EPTC112 and 3BNC117
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-01-21
Authors: Baquero, E., Molinos-Albert, L., Mouquet, H.