LiteFold/PDB huggingface dataset:
PDB entry 7n9u: CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2021-06-18
Authors: Gerber, E.E., Digianantonio, K.M., Tripler, T.N., Smaga, S.S., Summers, B.J., Xiong, Y.
PDB entry 7n9v: CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2021-06-18
Authors: Tripler, T.N.
PDB entry 7n9w: CLC-ec1 pH 4.5 100mM Cl Twist1
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2021-06-18
Authors: Fortea, E., Boudker, O., Accardi, A.
PDB entry 7n9x: CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 3.511 Å
Deposited: 2021-06-18
Authors: Gerber, E.E., Digianantonio, K.M., Tripler, T.N., Smaga, S.S., Summers, B.J., Xiong, Y.
PDB entry 7n9y: Full-length TcdB and CSPG4 (401-560) complex
Classification: SIGNALING PROTEIN/Hydrolase
Source organism: Clostridioides difficile; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2021-06-18
Authors: Jiang, M., Zhang, J.
PDB entry 7n9z: E. coli cytochrome bo3 in MSP nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2021-06-19
Authors: Vallese, F., Clarke, O.B.
PDB entry 7na0: Structure of Geobacter sulfurreducens proline utilization A (PutA) variant A206W
Classification: OXIDOREDUCTASE
Source organism: Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-06-19
Authors: Tanner, J.J., Korasick, D.A.
PDB entry 7na1: HDM2 in complex with compound 2
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-06-19
Authors: Scapin, G.
PDB entry 7na2: HDM2 in complex with compound 56
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2021-06-19
Authors: Scapin, G.
PDB entry 7na3: HDM2 in complex with compound 62
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2021-06-19
Authors: Scapin, G.
PDB entry 7na4: HDM2 in complex with compound 63
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2021-06-19
Authors: Scapin, G.
PDB entry 7na5: Structure of the H2DB-TCR ternary complex with HSF2 melanoma neoantigen
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-06-19
Authors: Patskovsky, Y., Finnigan, J., Patskovska, L., Newman, J., Bhardwaj, N., Krogsgaard, M.
PDB entry 7na6: Cryo-EM structure of AAV True Type
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2021-06-19
Authors: Bennett, A.D., McKenna, R.
PDB entry 7na7: Structures of human ghrelin receptor-Gi complexes with ghrelin and a synthetic agonist
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-06-20
Authors: Liu, H., Sun, D., Sun, J., Zhang, C.
PDB entry 7na8: Structures of human ghrelin receptor-Gi complexes with ghrelin and a synthetic agonist
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-06-20
Authors: Liu, H., Sun, D., Sun, J., Zhang, C.
PDB entry 7na9: Crystal structure of BoNT/B-LC-JSG-C1
Classification: TOXIN
Source organism: Clostridium botulinum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2021-06-20
Authors: Lam, K., Jin, R.
PDB entry 7naa: Crystal structure of Mycobacterium tuberculosis H37Rv PknF kinase domain
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2021-06-21
Authors: Oliveira, A.A., Cabarca, S., dos Reis, C.V., Takarada, J.E., Counago, R.M., Balan, A., Structural Genomics Consortium (SGC)
PDB entry 7nab: Crystal structure of human neutralizing mAb CV3-25 binding to SARS-CoV-2 S MPER peptide 1140-1165
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-06-21
Authors: Chen, Y., Tolbert, W.D., Pazgier, M.
PDB entry 7nac: State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2021-06-21
Authors: Cruz, V.E., Sekulski, K., Peddada, N., Erzberger, J.P.
PDB entry 7nad: State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2021-06-21
Authors: Cruz, V.E., Sekulski, K., Peddada, N., Erzberger, J.P.
PDB entry 7nae: Crystal structure of Escherichia coli dihydrofolate reductase in complex with TRIMETHOPRIM
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2021-06-21
Authors: Estrada, A., Wright, D., Krucinska, J., Erlandsen, H.
PDB entry 7naf: State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2021-06-21
Authors: Cruz, V.E., Sekulski, K., Peddada, N., Erzberger, J.P.
PDB entry 7nag: Crystal structure of the TIR domain from human SARM1 in complex with 1AD
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2021-06-21
Authors: Shi, Y., Bosanac, T., Hughes, R.O., Ve, T.
PDB entry 7nah: Crystal structure of the TIR domain from human SARM1 in complex with 2AD
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2021-06-21
Authors: Shi, Y., Ve, T.
PDB entry 7nai: Crystal structure of the TIR domain from human SARM1 in complex with 3AD
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-06-21
Authors: Shi, Y., Ve, T.
PDB entry 7naj: Crystal structure of the TIR domain from human SARM1 in complex with ara-2'F-ADPR
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-06-21
Authors: Shi, Y., Ve, T.
PDB entry 7nak: Cryo-EM structure of activated human SARM1 in complex with NMN and 1AD (TIR:1AD)
Classification: HYDROLASE/Inhibitor
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-06-21
Authors: Kerry, P.S., Nanson, J.D., Adams, S., Cunnea, K., Bosanac, T., Kobe, B., Hughes, R.O., Ve, T.
PDB entry 7nal: Cryo-EM structure of activated human SARM1 in complex with NMN and 1AD (ARM and SAM domains)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-06-21
Authors: Kerry, P.S., Nanson, J.D., Adams, S., Cunnea, K., Bosanac, T., Kobe, B., Hughes, R.O., Ve, T.
PDB entry 7nam: LRP6_E1 in complex with Lr-EET-3.5
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-06-21
Authors: Hansen, S., Hannoush, R.N.
PDB entry 7nan: Human 20S proteasome core particle
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-06-22
Authors: Zhao, J., Makhija, S., Huang, B., Cheng, Y.
PDB entry 7nao: Human PA28-20S proteasome complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-06-22
Authors: Zhao, J., Makhija, S., Huang, B., Cheng, Y.
PDB entry 7nap: Human PA28-20S-PA28 proteasome complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-06-22
Authors: Zhao, J., Makhija, S., Huang, B., Cheng, Y.
PDB entry 7naq: Human PA200-20S proteasome complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-06-22
Authors: Zhao, J., Makhija, S., Huang, B., Cheng, Y.
PDB entry 7nar: Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7nas: Bacterial 30S ribosomal subunit assembly complex state A (multibody refinement for body domain of 30S ribosome)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7nat: Bacterial 30S ribosomal subunit assembly complex state A (Consensus refinement)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7nau: Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7nav: Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)
Classification: RIBOSOME
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7naw: Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7nax: Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2021-01-25
Authors: Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Lopez-Alonso, J., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.
PDB entry 7nay: Crystal structure of lactate dehydrogenase from Selenomonas ruminantium with NADH.
Classification: OXIDOREDUCTASE
Source organism: Selenomonas ruminantium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2021-01-25
Authors: Bertrand, Q., Robin, A., Girard, E., Madern, D.
PDB entry 7naz: TPR-rich domain of EccA3 from M. smegmatis
Classification: UNKNOWN FUNCTION
Source organism: Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-01-25
Authors: Crosskey, T.D., Wilmanns, M.
PDB entry 7nb0: Structure of the DNA-binding domain of SEPALLATA 3
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-01-25
Authors: Zubieta, C., Nanao, M.H.
PDB entry 7nb1: Crystal structure of human choline alpha in complex with an inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-01-25
Authors: Casale, E., Fasolini, M.
PDB entry 7nb2: Crystal structure of human choline alpha in complex with an inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-01-25
Authors: Casale, E., Fasolini, M.
PDB entry 7nb3: Crystal structure of human choline alpha in complex with an inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-01-25
Authors: Casale, E., Fasolini, M.
PDB entry 7nb4: Structure of Mcl-1 complex with compound 1
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-01-25
Authors: Dokurno, P., Surgenor, A.E., Kotschy, A.
PDB entry 7nb5: Structure of EstD11 S144A in complex with naproxen p-nitrophenol ester
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2021-01-25
Authors: Miguel-Ruano, V., Rivera, I., Hermoso, J.A.
PDB entry 7nb6: Structure of the autoinducer-2 exporter TqsA from E. coli
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-01-25
Authors: Khera, R., Xie, H., Michel, H.
PDB entry 7nb7: Structure of Mcl-1 complex with compound 6b
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2021-01-25
Authors: Dokurno, P., Surgenor, A.E., Kotschy, A.
PDB entry 7nb8: Plasmodium falciparum kinesin-5 motor domain without nucleotide, complexed with 14 protofilament microtubule.
Classification: MOTOR PROTEIN
Source organism: Plasmodium falciparum (isolate 3D7); Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2021-01-25
Authors: Cook, A.D., Roberts, A., Atherton, J., Tewari, R., Topf, M., Moores, C.A.
PDB entry 7nb9: E. coli NfsA with nitrofurantoin
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.09 Å
Deposited: 2021-01-25
Authors: Day, M.D., Jarrom, D., Grainger, A.I., Parr, R.J., Hyde, E.I., White, S.A.
PDB entry 7nba: Plasmodium falciparum kinesin-5 motor domain bound to AMPPNP, complexed with 14 protofilament microtubule.
Classification: MOTOR PROTEIN
Source organism: Plasmodium falciparum (isolate NF54); Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-01-25
Authors: Cook, A.D., Roberts, A., Atherton, J., Tewari, R., Topf, M., Moores, C.A.
PDB entry 7nbb: Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2021-01-26
Authors: Lange, S.M., Kulathu, Y.
PDB entry 7nbc: Crystal structure of human serine racemase in complex with DSiP fragment Z2856434779, XChem fragment screen.
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2021-01-26
Authors: Koulouris, C.R., Roe, S.M.
PDB entry 7nbd: Crystal structure of human serine racemase in complex with DSiP fragment Z235449082, XChem fragment screen.
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.865 Å
Deposited: 2021-01-26
Authors: Koulouris, C.R., Roe, S.M.
PDB entry 7nbf: Crystal structure of human serine racemase in complex with DSiP fragment Z126932614, XChem fragment screen.
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-01-26
Authors: Koulouris, C.R., Roe, S.M.
PDB entry 7nbg: Crystal structure of human serine racemase in complex with DSiP fragment Z52314092, XChem fragment screen.
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2021-01-26
Authors: Koulouris, C.R., Roe, S.M.
PDB entry 7nbh: Crystal structure of human serine racemase in complex with DSiP fragment Z26781964, XChem fragment screen.
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2021-01-26
Authors: Koulouris, C.R., Roe, S.M.
PDB entry 7nbi: Crystal structure of a monomeric FLT3 Ligand variant
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-01-26
Authors: Pannecoucke, E., Raes, L., Savvides, S.N.
PDB entry 7nbj: Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with the bisubstrate-like inhibitor (1)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.275 Å
Deposited: 2021-01-27
Authors: Schreuder, H.A., Liesum, A.
PDB entry 7nbk: Solution structure of DNA duplex containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2021-01-27
Authors: Cabrero, C., Martin-Pintado, N., Mazzini, S., Gargallo, R., Eritja, R., Avino, A., Gonzalez, C.
PDB entry 7nbl: Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification
Classification: DNA-RNA HYBRID
Experimental method: SOLUTION NMR
Deposited: 2021-01-27
Authors: Cabrero, C., Martin-Pintado, N., Mazzini, S., Gargallo, R., Eritja, R., Avino, A., Gonzalez, C.
PDB entry 7nbm: Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with the bisubstrate-like inhibitor (33)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.691 Å
Deposited: 2021-01-27
Authors: Schreuder, H.A., Liesum, A.
PDB entry 7nbn: Allostery through DNA drives phenotype switching
Classification: DNA BINDING PROTEIN
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2021-01-27
Authors: Rosenblum, G., Elad, N., Rozenberg, H., Wiggers, F., Jungwirth, J., Hofmann, H.
PDB entry 7nbp: Solution structure of DNA duplex containing a 7,8-dihydro-8-oxo-1,N6-ethenoadenine base modification that induces exclusively A->T transversions in Escherichia coli
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2021-01-27
Authors: Aralov, A.V., Gubina, N., Cabrero, C., Tsvetkov, V.B., Turaev, A.V., Fedeles, B.I., Croy, R.G., Isaakova, E.A., Melnik, D., Dukova, S., Khrulev, A.A., Varizhuk, A.M., Gonzalez, C., Zatsepin, T.S., Essigmann, J.M.
PDB entry 7nbq: Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with the tricyclic inhibitor (4)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.479 Å
Deposited: 2021-01-27
Authors: Schreuder, H.A., Liesum, A.
PDB entry 7nbr: Crystal structure of SARS-CoV-2 main protease (Mpro) in complex with the HCV NS3/4A inhibitor boceprevir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-01-27
Authors: Zhang, L., Hilgenfeld, R.
PDB entry 7nbs: Crystal structure of SARS-CoV-2 main protease (Mpro) in complex with the HCV NS3/4A inhibitor telaprevir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-01-27
Authors: Zhang, L., Hilgenfeld, R.
PDB entry 7nbt: Crystal Structure of SARS-CoV-2 main protease (Nsp5) in complex with compound 21
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2021-01-27
Authors: Talibov, V.O.
PDB entry 7nbu: Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.
Classification: TOXIN
Source organism: Escherichia coli; Escherichia coli K-12; Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2021-01-27
Authors: Giudice, E., Mansour, M., Chat, S., D'Urso, G., Gillet, R., Genevaux, P.
PDB entry 7nbv: Structure of 2A protein from Theilers murine encephalomyelitis virus (TMEV)
Classification: VIRAL PROTEIN
Source organism: Theiler's murine encephalomyeltits virus GDVII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2021-01-28
Authors: Hill, C.H., Cook, G.M., Napthine, S., Kibe, A., Brown, K., Caliskan, N., Firth, A.E., Graham, S.C., Brierley, I.
PDB entry 7nbw: Crystal structure of PqsR (MvfR) ligand-binding domain in complex with a pyridin agonist
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2021-01-28
Authors: Schmelz, S., Blankenfeldt, W.
PDB entry 7nbx: Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2021-01-28
Authors: Haysom, S.F.
PDB entry 7nby: Crystal structure of SU3327 (halicin) covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-01-28
Authors: Costanzi, E., Demitri, N., Giabbai, B., Storici, P.
PDB entry 7nbz: Crystal structure of ligand free open conformation of sulfoquinovosyl binding protein (SQBP) from Agrobacterium tumefaciens
Classification: SUGAR BINDING PROTEIN
Source organism: Rhizobium radiobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2021-01-28
Authors: Snow, A., Sharma, M., Davies, G.J.
PDB entry 7nc0: The structure of the humanised A33 Fab C226S variant, an immunotherapy candidate for colorectal cancer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-01-28
Authors: Tang, J., Zhang, C., Dalby, P., Kozielski, F.
PDB entry 7nc1: Glutathione-S-transferase GliG with partially disordered active site
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7nc2: Glutathione-S-transferase GliG (space group P3221)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7nc3: Glutathione-S-transferase GliG (space group P212121)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7nc4: Crystal structure of human carbonic anhydrase VII (hCA VII) in complex with a 4-(4-aroylpiperazine-1-carbonyl)benzenesulfonamide derivative.
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-01-28
Authors: Di Fiore, A., De Simone, G.
PDB entry 7nc5: Glutathione-S-transferase GliG in complex with reduced glutathione
Classification: BIOSYNTHETIC PROTEIN
Source organism: Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7nc6: Glutathione-S-transferase GliG in complex with cyclo[L-Phe-L-Ser]-bis-glutathione-adduct
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7nc7: Crystal structure of fructose-bisphosphate aldolases FBAC from Bacillus methanolicus
Classification: LYASE
Source organism: Bacillus methanolicus (strain MGA3 / ATCC 53907)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-01-28
Authors: Einsle, O., Zhang, L., Guetle, D., Jacquot, J.P.
PDB entry 7nc8: Glutathione-S-transferase GliG mutant S24A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7nc9: Glutathione-S-transferase GliG mutant H26N
Classification: BIOSYNTHETIC PROTEIN
Source organism: Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7nca: Type 1A alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2021-01-28
Authors: Lovestam, S.K.A., Schweighauser, M., Scheres, S.H.W.
PDB entry 7ncb: Glutathione-S-transferase GliG mutant H26A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7ncc: Crystal structure of fructose-bisphosphate aldolase FBAP from Bacillus methanolicus
Classification: LYASE
Source organism: Bacillus methanolicus (strain MGA3 / ATCC 53907)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-01-28
Authors: Einsle, O., Zhang, L., Guetle, D., Jacquot, J.P.
PDB entry 7ncd: Glutathione-S-transferase GliG mutant N27D
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7nce: Glutathione-S-transferase GliG mutant N27A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-01-28
Authors: Groll, M., Huber, E.M.
PDB entry 7ncf: Crystal structure of HIPK2 in complex with MU135 (compound 21e)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2021-01-28
Authors: Chaikuad, A., Paruch, K., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 7ncg: Type 2A alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2021-01-28
Authors: Lovestam, S.K.A., Schweighauser, M., Scheres, S.H.W.
PDB entry 7nch: Type 1B alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2021-01-28
Authors: Lovestam, S.K.A., Schweighauser, M., Scheres, S.H.W.
PDB entry 7nci: Type 2B alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2021-01-28
Authors: Lovestam, S.K.A., Schweighauser, M., Scheres, S.H.W.
PDB entry 7ncj: Type 2AB alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å
Deposited: 2021-01-28
Authors: Lovestam, S.K.A., Schweighauser, M., Scheres, S.H.W.
PDB entry 7nck: Type 3 alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 5
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2021-01-28
Authors: Lovestam, S.K.A., Schweighauser, M., Scheres, S.H.W.
PDB entry 7ncl: Glutathione-S-transferase GliG mutant E82Q
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-01-29
Authors: Groll, M., Huber, E.M.
PDB entry 7ncm: Glutathione-S-transferase GliG mutant E82A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-01-29
Authors: Groll, M., Huber, E.M.
PDB entry 7ncn: Glutathione-S-transferase GliG mutant S83A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-01-29
Authors: Groll, M., Huber, E.M.
PDB entry 7nco: Glutathione-S-transferase GliG mutant K127R
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-01-29
Authors: Groll, M., Huber, E.M.
PDB entry 7ncp: Glutathione-S-transferase GliG mutant K127A
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2021-01-29
Authors: Groll, M., Huber, E.M.
PDB entry 7ncr: Cryo-EM structure of Pepper cryptic virus 1 VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Pepper cryptic virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-01-29
Authors: Byrne, M.J., Sainsbury, F., Ranson, N.A.
PDB entry 7ncs: Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) bound by a bactericidal Fab fragment
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12 ; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2021-01-29
Authors: Haysom, S.F., Machin, J.M.
PDB entry 7nct: Glutathione-S-transferase GliG mutant K127G
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2021-01-29
Authors: Groll, M., Huber, E.M.
PDB entry 7ncu: Glutathione-S-transferase GliG mutant K127G in complex with oxidized glutathione
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus A1163
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-01-29
Authors: Groll, M., Huber, E.M.
PDB entry 7ncv: Crystal structure of reduced glutaredoxin 2 from Chlamydomonas reinhardtii
Classification: OXIDOREDUCTASE
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-01-29
Authors: Roret, T., Didierjean, C.
PDB entry 7ncw: Crystal structure of oxidized glutaredoxin 2 from Chlamydomonas reinhardtii
Classification: OXIDOREDUCTASE
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-01-29
Authors: Roret, T., Didierjean, C.
PDB entry 7ncx: Crystal structure of GH30 (double mutant EE) from Thermothelomyces thermophila.
Classification: HYDROLASE
Source organism: Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2021-01-29
Authors: Dimarogona, M., Nikolaivits, E., Topakas, E., Weiss, M., Feiler, C.G.
PDB entry 7ncy: Dual specificity phosphatase from Sulfolobales Beppu filamentous virus 3
Classification: VIRAL PROTEIN
Source organism: Sulfolobales Beppu filamentous virus 3
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-01-29
Authors: Welin, M., Akutsu, M., Hakansson, M., Al-Karadaghi, S., Jasilionis, A., Nordberg Karlsson, E.
PDB entry 7ncz: Crystal structure of Paradendryphiella salina PL7A alginate lyase mutant Y223F in complex with hexa-mannuronic acid
Classification: LYASE
Source organism: Paradendryphiella salina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2021-01-29
Authors: Fredslund, F., Welner, D.H., Wilkens, C.
PDB entry 7nd0: lateral-open conformation of the wild-type BAM complex (BamABCDE) bound to a bactericidal Fab fragment
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2021-01-29
Authors: Iadanza, M.G., Haysom, S.H.
PDB entry 7nd1: First-in-class small molecule inhibitors of Polycomb Repressive Complex 1 (PRC1) RING domain
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2021-01-29
Authors: Cierpicki, T., Lund, G., Jaremko, L.
PDB entry 7nd2: Cryo-EM structure of the human FERRY complex
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-01-29
Authors: Quentin, D., Klink, B.U., Raunser, S.
PDB entry 7nd3: EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7nd4: EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-88 Fab
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7nd5: EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-150 Fab
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7nd6: EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.3 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7nd7: EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-316 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7nd8: EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-384 Fab
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7nd9: EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-253H55L Fab
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7nda: EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-253H55L Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7ndb: EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-253H165L Fab
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7ndc: EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-159
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7ndd: EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-159
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2021-01-30
Authors: Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D.
PDB entry 7nde: Trichoderma parareesei PL7A beta-glucuronan lyase
Classification: LYASE
Source organism: Trichoderma parareesei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-02-01
Authors: Fredslund, F., Welner, D.H., Wilkens, C.
PDB entry 7ndf: Crystal structure of nanobody Nb_MsbA#1 in complex with the nucleotide binding domain of MsbA
Classification: PROTEIN BINDING
Source organism: Escherichia coli; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-02-01
Authors: Meier, G., Seeger, M.
PDB entry 7ndg: Cryo-EM structure of the ternary complex between Netrin-1, Neogenin and Repulsive Guidance Molecule B
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.98 Å
Deposited: 2021-02-01
Authors: Robinson, R.A., Griffiths, S.C., van de Haar, L.L., Malinauskas, T., van Battum, E.Y., Zelina, P., Schwab, R.A., Karia, D., Malinauskaite, L., Brignani, S., van den Munkhof, M., Dudukcu, O., De Ruiter, A.A., Van den Heuvel, D.M.A., Bishop, B., Elegheert, J., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.
PDB entry 7ndh: Crystal structure of ZC3H12C PIN domain
Classification: RNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2021-02-01
Authors: Garg, A., Heinemann, U.
PDB entry 7ndi: Crystal structure of ZC3H12C PIN domain with Mg2+ Ion
Classification: RNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.875 Å
Deposited: 2021-02-01
Authors: Garg, A., Heinemann, U.
PDB entry 7ndj: Crystal structure of ZC3H12C PIN-CCCH Zn Finger domain with RNA heptamer
Classification: RNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.649 Å
Deposited: 2021-02-01
Authors: Garg, A., Heinemann, U.
PDB entry 7ndk: Crystal structure of ZC3H12C PIN catalytic mutant
Classification: RNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2021-02-01
Authors: Garg, A., Heinemann, U.
PDB entry 7ndl: Crystal structure of human GFAT-1 S205D
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.223 Å
Deposited: 2021-02-02
Authors: Ruegenberg, S., Baumann, U., Denzel, M.S.
PDB entry 7ndm: Crystal structure of the heterocyclic toxin methyltransferase from Mycobacterium tuberculosis with bound substrate 4-hydroxyisoquinolin-1(2H)-one
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2021-02-02
Authors: Denkhaus, L., Sartor, P., Einsle, O., Gerhardt, S., Fetzner, S.
PDB entry 7ndo: ER-PRS*(-) (L536S, L372R) in complex with raloxifene
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-02-02
Authors: Kriegel, M., Muller, Y.A.
PDB entry 7ndp: X-ray structure of acetylcholine-binding protein (AChBP) in complex with FL001856.
Classification: CHOLINE-BINDING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-02-02
Authors: Cederfelt, D., Boronat, P., Dobritzsch, D., Hennig, S., Fitzgerald, E.A., de Esch, I.J.P., Danielson, U.H.
PDB entry 7ndq: Gag:02 TCR in complex with HLA-E.
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.551 Å
Deposited: 2021-02-02
Authors: Pengelly, R.J., Robinson, R.A.
PDB entry 7ndr: Crystal structure of TphC in an open conformation
Classification: TRANSPORT PROTEIN
Source organism: Comamonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-02-02
Authors: Levy, C.
PDB entry 7nds: Crystal structure of TphC in a closed conformation
Classification: TRANSPORT PROTEIN
Source organism: Comamonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-02-02
Authors: Levy, C.
PDB entry 7ndt: UL40:01 TCR in complex with HLA-E with a non-natural amino acid
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.999 Å
Deposited: 2021-02-02
Authors: Pengelly, R.J., Robinson, R.A.
PDB entry 7ndu: Gag:02 TCR in complex with HLA-E featuring a non-natural amino acid
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-02-02
Authors: Pengelly, R.J., Robinson, R.A.
PDB entry 7ndv: X-ray structure of acetylcholine-binding protein (AChBP) in complex with FL001888.
Classification: CHOLINE-BINDING PROTEIN
Source organism: Lymnaea stagnalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-02-02
Authors: Cederfelt, D., Boronat, P., Dobritzsch, D., Hennig, S., Fitzgerald, E.A., de Esch, I.J.P., Danielson, U.H.
PDB entry 7ndw: ThyX-FADH2 soaked with 20 mM Formaldehyde
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-02-02
Authors: Bou-Nader, C., Pecqueur, L., Hamdane, D.
PDB entry 7ndx: Crystal structure of the human HSP40 DNAJB1-CTDs in complex with a peptide of NudC
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.541 Å
Deposited: 2021-02-02
Authors: Delhommel, F., Zak, K.M., Popowicz, G.M., Sattler, M.
PDB entry 7ndy: Di-phosphorylated Barrier-to-Autointegration Factor (BAF) in complex with LEM domain of Emerin
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2021-02-02
Authors: Marcelot, A., Le Du, M.H., Hoffmann, G., Zinn-Justin, S.
PDB entry 7ndz: ThyX reconstituted with N5-carbinolamine flavin
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-02-02
Authors: Bou-Nader, C., Pecqueur, L., Hamdane, D.
PDB entry 7ne0: Structure of the ternary complex between Netrin-1, Repulsive-Guidance Molecule-B (RGMB) and Neogenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2021-02-02
Authors: Robinson, R.A., Griffiths, S.C., van de Haar, L.L., Malinauskas, T., van Battum, E.Y., Zelina, P., Schwab, R.A., Karia, D., Malinauskaite, L., Brignani, S., van den Munkhof, M., Dudukcu, O., De Ruiter, A.A., Van den Heuvel, D.M.A., Bishop, B., Elegheert, J., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.
PDB entry 7ne1: Structure of the complex between Netrin-1 and its receptor Neogenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2021-02-02
Authors: Robinson, R.A., Griffiths, S.C., van de Haar, L.L., Malinauskas, T., van Battum, E.Y., Zelina, P., Schwab, R.A., Karia, D., Malinauskaite, L., Brignani, S., van den Munkhof, M., Dudukcu, O., De Ruiter, A.A., Van den Heuvel, D.M.A., Bishop, B., Elegheert, J., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.
PDB entry 7ne2: Crystal structure of class I SFP aldolase YihT from Salmonella enterica with SFP/ DHAP (Schiff base complex with active site Lys193)
Classification: LYASE
Source organism: Salmonella enterica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-02-03
Authors: Sharma, M., Davies, G.J.
PDB entry 7ne3: Human TET2 in complex with favourable DNA substrate.
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2021-02-03
Authors: Rafalski, D., Bochtler, M.
PDB entry 7ne4: E125A mutant of oligopeptidase B from S. proteomaculans with modified hinge region
Classification: HYDROLASE
Source organism: Serratia proteamaculans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.717 Å
Deposited: 2021-02-03
Authors: Petrenko, D.E., Nikolaeva, A.Y., Lazarenko, V.A., Dorovatovskiy, P.V., Vlaskina, A.V., Mikhailova, A.G., Rakitina, T.V., Timofeev, V.I.
PDB entry 7ne5: catalytically non active S532A mutant of oligopeptidase B from S. proteomaculans with modified hinge region
Classification: HYDROLASE
Source organism: Serratia proteamaculans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2021-02-03
Authors: Petrenko, D.E., Nikolaeva, A.Y., Lazarenko, V.A., Dorovatovskiy, P.V., Vlaskina, A.V., Mikhailova, A.G., Rakitina, T.V., Timofeev, V.I.
PDB entry 7ne6: Human TET2 in complex with unfavourable DNA substrate.
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-02-03
Authors: Rafalski, D., Bochtler, M.
PDB entry 7ne7: oligopeptidase B from S. proteomaculans with modified hinge region in complex with N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide
Classification: HYDROLASE
Source organism: Serratia proteamaculans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-02-03
Authors: Petrenko, D.E., Nikolaeva, A.Y., Lazarenko, V.A., Dorovatovskiy, P.V., Vlaskina, A.V., Mikhailova, A.G., Rakitina, T.V., Timofeev, V.I.
PDB entry 7ne8: Tick salivary protein BSAP1
Classification: IMMUNOSUPPRESSANT
Source organism: Ornithodoros savignyi
Experimental method: SOLUTION NMR
Deposited: 2021-02-03
Authors: Denisov, S.S., Ippel, J.H., Castoldi, E., Hackeng, T.M., Dijkgraaf, I.
PDB entry 7ne9: A single sensor controls large variations in zinc quotas in a marine cyanobacterium
Classification: METAL BINDING PROTEIN
Source organism: Synechococcus sp. (strain WH8102)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-02-03
Authors: Fulop, V.
PDB entry 7nea: Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum (M3 mutant).
Classification: TRANSFERASE
Source organism: Thermobaculum terrenum (strain ATCC BAA-798 / YNP1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-02-03
Authors: Boyko, K.M., Petrova, T., Nikolaeva, A.Y., Zeifman, Y.S., Rakitina, T.V., Suplatov, D.A., Popov, V.O., Bezsudnova, E.Y.