LiteFold/PDB huggingface dataset:
PDB entry 3ahn: PZ PEPTIDASE A with Inhibitor 1
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Geobacillus sp. MO-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-04-25
Authors: Nakano, H.
PDB entry 3aho: PZ PEPTIDASE A with inhibitor 2
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Geobacillus sp. MO-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2010-04-25
Authors: Nakano, H.
PDB entry 3ahp: Crystal structure of stable protein, CutA1, from a psychrotrophic bacterium Shewanella sp. SIB1
Classification: ELECTRON TRANSPORT
Source organism: Shewanella
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2010-04-26
Authors: Tanaka, S., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3ahq: hyperactive human Ero1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2010-04-26
Authors: Inaba, K., Sitia, R., Suzuki, M.
PDB entry 3ahr: Inactive human Ero1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2010-04-26
Authors: Inaba, K., Sitia, R., Suzuki, M.
PDB entry 3ahs: Crystal Structure of Ustilago sphaerogena Ribonuclease U2B
Classification: HYDROLASE
Source organism: Ustilago sphaerogena
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2010-04-29
Authors: Noguchi, S.
PDB entry 3aht: Crystal structure of rice BGlu1 E176Q mutant in complex with laminaribiose
Classification: HYDROLASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-04-29
Authors: Chuenchor, W., Pengthaisong, S., Robinson, R.C., Yuvaniyama, J., Svasti, J., Ketudat Cairns, J.R.
PDB entry 3ahu: Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
Classification: TRANSLATION/RNA
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-04-29
Authors: Baba, S., Someya, T., Kumasaka, T., Kawai, G., Nakamura, K.
PDB entry 3ahv: Semi-active E176Q mutant of rice bglu1 covalent complex with 2-deoxy-2-fluoroglucoside
Classification: HYDROLASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2010-04-30
Authors: Chuenchor, W., Pengthaisong, S., Robinson, R.C., Yuvaniyama, J., Svasti, J., Ketudat Cairns, J.R.
PDB entry 3ahw: Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 2'-monophosphate
Classification: HYDROLASE
Source organism: Ustilago sphaerogena
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2010-05-04
Authors: Noguchi, S.
PDB entry 3ahx: Crystal structure of beta-glucosidase A from bacterium Clostridium cellulovorans
Classification: HYDROLASE
Source organism: Clostridium cellulovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-05-06
Authors: Jeng, W.-Y., Liu, C.-I., Wang, A.H.-J.
PDB entry 3ahy: Crystal structure of beta-glucosidase 2 from fungus Trichoderma reesei in complex with Tris
Classification: HYDROLASE
Source organism: Trichoderma reesei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2010-05-06
Authors: Jeng, W.-Y., Liu, C.-I., Wang, A.H.-J.
PDB entry 3ahz: Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with Tris
Classification: HYDROLASE
Source organism: Neotermes koshunensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2010-05-06
Authors: Jeng, W.-Y., Liu, C.-I., Wang, A.H.-J.
PDB entry 3ai0: Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with para-nitrophenyl-beta-D-glucopyranoside
Classification: HYDROLASE
Source organism: Neotermes koshunensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2010-05-06
Authors: Jeng, W.-Y., Liu, C.-I., Wang, A.H.-J.
PDB entry 3ai1: The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose reveals the structure bases of its catalytic mechanism and high substrate selectivity
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter frateurii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2010-05-06
Authors: Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
PDB entry 3ai2: The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter frateurii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-05-07
Authors: Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
PDB entry 3ai3: The crystal structure of L-Sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter frateurii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-05-07
Authors: Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
PDB entry 3ai4: Crystal structure of yeast enhanced green fluorescent protein - mouse polymerase iota ubiquitin binding motif fusion protein
Classification: Fluorescent Protein, replication
Source organism: Aequorea victoria; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-05-10
Authors: Suzuki, N., Wakatsuki, S., Kawasaki, M.
PDB entry 3ai5: Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion protein
Classification: Fluorescent Protein, transcription
Source organism: Aequorea victoria; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2010-05-10
Authors: Suzuki, N., Wakatsuki, S., Kawasaki, M.
PDB entry 3ai6: Triple-helical structure of (D-Pro-D-Pro-Gly)9 at 1.1 A resolution
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2010-05-10
Authors: Okuyama, K., Miyama, K., Kawaguchi, T., Nishino, N.
PDB entry 3ai7: Crystal Structure of Bifidobacterium Longum Phosphoketolase
Classification: LYASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-05-10
Authors: Takahashi, K., Tagami, U., Shimba, N., Kashiwagi, T., Ishikawa, K., Suzuki, E.
PDB entry 3ai8: Cathepsin B in complex with the nitroxoline
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2010-05-11
Authors: Renko, M., Mirkovic, B., Gobec, S., Kos, J., Turk, D.
PDB entry 3ai9: Crystal structure of DUF358 protein reveals a putative SPOUT-class rRNA methyltransferase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2010-05-11
Authors: Yuan, Y.A., Chen, H.Y.
PDB entry 3aia: Crystal structure of DUF358 reveals a putative SPOUT-class methltransferase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2010-05-11
Authors: Yuan, Y.A., Chen, H.Y.
PDB entry 3aib: Crystal Structure of Glucansucrase
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2010-05-12
Authors: Ito, K., Ito, S., Shimamura, T., Iwata, S.
PDB entry 3aic: Crystal Structure of Glucansucrase from Streptococcus mutans
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2010-05-12
Authors: Ito, K., Ito, S., Shimamura, T., Iwata, S.
PDB entry 3aid: A NEW CLASS OF HIV-1 PROTEASE INHIBITOR: THE CRYSTALLOGRAPHIC STRUCTURE, INHIBITION AND CHEMICAL SYNTHESIS OF AN AMINIMIDE PEPTIDE ISOSTERE
Classification: ASPARTYL PROTEASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1997-05-15
Authors: Rutenber, E.E., Stroud, R.M.
PDB entry 3aie: Crystal Structure of glucansucrase from Streptococcus mutans
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-05-12
Authors: Ito, K., Ito, S., Shimamura, T., Iwata, S.
PDB entry 3aig: ADAMALYSIN II WITH PEPTIDOMIMETIC INHIBITOR POL656
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Crotalus adamanteus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1997-10-12
Authors: Gomis-Rueth, F.X., Meyer, E.F., Kress, L.F., Politi, V.
PDB entry 3aih: Human OS-9 MRH domain complexed with alpha3,alpha6-Man5
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-05-14
Authors: Satoh, T., Chen, Y., Hu, D., Hanashima, S., Yamamoto, K., Yamaguchi, Y.
PDB entry 3aii: Archaeal non-discriminating glutamyl-tRNA synthetase from Methanothermobacter thermautotrophicus
Classification: LIGASE
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2010-05-14
Authors: Nureki, O., Ishitani, R.
PDB entry 3aik: Crystal structure of a HSL-like carboxylesterase from Sulfolobus tokodaii
Classification: HYDROLASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2010-05-16
Authors: Angkawidjaja, C., Kanaya, S.
PDB entry 3ail: Crystal structure of a HSL-like carboxylesterase from Sulfolobus tokodaii complexed with paraoxon
Classification: HYDROLASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2010-05-16
Authors: Angkawidjaja, C., Kanaya, S.
PDB entry 3aim: R267E mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii
Classification: HYDROLASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-05-16
Authors: Angkawidjaja, C., Kanaya, S.
PDB entry 3ain: R267G mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii
Classification: HYDROLASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2010-05-16
Authors: Angkawidjaja, C., Kanaya, S.
PDB entry 3aio: R267K mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii
Classification: HYDROLASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-05-16
Authors: Angkawidjaja, C., Kanaya, S.
PDB entry 3aiq: Crystal structure of beta-glucosidase in wheat complexed with an aglycone DIMBOA
Classification: HYDROLASE
Source organism: Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-05-18
Authors: Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
PDB entry 3air: Crystal structure of beta-glucosidase in wheat complexed with 2-deoxy-2-fluoroglucoside and dinitrophenol
Classification: HYDROLASE
Source organism: Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-05-18
Authors: Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
PDB entry 3ais: Crystal structure of a mutant beta-glucosidase in wheat complexed with DIMBOA-Glc
Classification: HYDROLASE
Source organism: Triticum aestivum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-05-18
Authors: Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
PDB entry 3ait: RESTRAINED ENERGY REFINEMENT WITH TWO DIFFERENT ALGORITHMS AND FORCE FIELDS OF THE STRUCTURE OF THE ALPHA-AMYLASE INHIBITOR TENDAMISTAT DETERMINED BY NMR IN SOLUTION
Classification: ALPHA-AMYLASE INHIBITOR
Source organism: Streptomyces tendae
Experimental method: SOLUTION NMR
Deposited: 1990-05-14
Authors: Billeter, M., Schaumann, T., Braun, W., Wuthrich, K.
PDB entry 3aiu: Crystal structure of beta-glucosidase in rye
Classification: HYDROLASE
Source organism: Secale cereale
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-05-18
Authors: Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
PDB entry 3aiv: Crystal structure of beta-glucosidase in rye complexed with an aglycone DIMBOA
Classification: HYDROLASE
Source organism: Secale cereale
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-05-18
Authors: Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
PDB entry 3aiw: Crystal structure of beta-glucosidase in rye complexed with 2-deoxy-2-fluoroglucoside and dinitrophenol
Classification: HYDROLASE
Source organism: Secale cereale
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-05-18
Authors: Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
PDB entry 3aix: Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (I222)
Classification: REPLICATION
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-05-18
Authors: Kawai, A., Higuchi, S., Miyamoto, S.
PDB entry 3aiy: R6 HUMAN INSULIN HEXAMER (SYMMETRIC), NMR, REFINED AVERAGE STRUCTURE
Classification: HORMONE/GROWTH FACTOR
Experimental method: SOLUTION NMR
Deposited: 1998-12-29
Authors: O'Donoghue, S.I., Chang, X., Abseher, R., Nilges, M., Led, J.J.
PDB entry 3aiz: Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (P21212)
Classification: REPLICATION
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-05-18
Authors: Kawai, A., Higuchi, S., Miyamoto, S.
PDB entry 3aj1: The structure of AxCeSD octamer (N-terminal HIS-tag) from Acetobacter xylinum
Classification: BIOSYNTHETIC PROTEIN
Source organism: ACETOBACTER XYLINUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-05-20
Authors: Hu, S.Q., Tajima, K., Zhou, Y., Tanaka, I., Yao, M.
PDB entry 3aj2: The structure of AxCeSD octamer (C-terminal HIS-tag) from Acetobacter xylinum
Classification: BIOSYNTHETIC PROTEIN
Source organism: Acetobacter xylinus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2010-05-20
Authors: Hu, S.Q., Tajima, K., Zhou, Y., Tanaka, I., Yao, M.
PDB entry 3aj3: Crystal structure of selenomethionine substituted 4-pyridoxolactonase from Mesorhizobium loti
Classification: HYDROLASE
Source organism: Mesorhizobium loti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.577 Å
Deposited: 2010-05-21
Authors: Kobayashi, J., Yoshikane, Y., Baba, S., Mikami, B., Yagi, T.
PDB entry 3aj4: Crystal structure of the PH domain of Evectin-2 from human complexed with O-phospho-L-serine
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2010-05-21
Authors: Okazaki, S., Kato, R., Wakatsuki, S.
PDB entry 3aj5: HA1 (HA33) subcomponent of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-05-24
Authors: Nakamura, T., Tonozuka, T., Sato, R., Oguma, K., Nishikawa, A.
PDB entry 3aj6: HA1 (HA33) mutant F179I of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II
Classification: TOXIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2010-05-24
Authors: Nakamura, T., Tonozuka, T., Sato, R., Oguma, K., Nishikawa, A.
PDB entry 3aj7: Crystal Structure of isomaltase from Saccharomyces cerevisiae
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2010-05-26
Authors: Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
PDB entry 3aj8: X-ray analysis of Crystal of Proteinase K Obtained from H2O Solution Using PEG 8000
Classification: HYDROLASE
Source organism: Tritirachium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2010-05-27
Authors: Chatake, T., Ishikawa, T., Morimoto, Y.
PDB entry 3aj9: X-ray analysis of Crystal of Proteinase K Obtained from D2O Solution Using PEG 8000
Classification: HYDROLASE
Source organism: Tritirachium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2010-05-27
Authors: Chatake, T., Ishikawa, T., Morimoto, Y.
PDB entry 3aja: Crystal Structure of MSMEG_6394
Classification: HYDROLASE
Source organism: Mycobacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-05-27
Authors: Vivian, J.P., Scoble, J., Beddoe, T., Rossjohn, J.
PDB entry 3ajb: Crystal Structure of human Pex3p in complex with N-terminal Pex19p peptide
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-05-27
Authors: Sato, Y., Shibata, H., Nakatsu, T., Kato, H.
PDB entry 3ajc: Structure of the MC domain of FliG (PEV), a CW-biased mutant
Classification: STRUCTURAL PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-05-27
Authors: Imada, K., Minamino, T., Kinoshita, M., Namba, K.
PDB entry 3ajd: Crystal structure of ATRM4
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2010-06-01
Authors: Hirano, M., Kuratani, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3aje: Crystal structure of S. tokodaii Sua5 complexed with L-threonine and AMPPNP
Classification: RNA BINDING PROTEIN
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-06-01
Authors: Kuratani, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3ajf: Structural insigths into dsRNA binding and RNA silencing suppression by NS3 protein of rice hoja blanca tenuivirus
Classification: VIRAL PROTEIN
Source organism: Rice hoja blanca virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-06-05
Authors: Yuan, Y.A.
PDB entry 3ajg: Crystal structure of PcyA V225D-biliverdin IX alpha complex
Classification: OXIDOREDUCTASE
Source organism: Synechocystis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-06-05
Authors: Wada, K., Hagiwara, Y., Fukuyama, K.
PDB entry 3ajh: Crystal structure of PcyA V225D-biliverdin XIII alpha complex
Classification: OXIDOREDUCTASE
Source organism: Synechocystis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2010-06-05
Authors: Wada, K., Hagiwara, Y., Fukuyama, K.
PDB entry 3aji: Structure of Gankyrin-S6ATPase photo-cross-linked site-specifically, and incoporated by genetic code expansion
Classification: CHAPERONE/PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2010-06-07
Authors: Sato, S., Mimasu, S., Sato, A., Hino, N., Sakamoto, K., Umehara, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3ajj: Crystal Structure of d(CGCGGATf5UCGCG): 5-Formyluridine/Guanosine Base-pair in B-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2010-06-07
Authors: Tsunoda, M., Sakaue, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 3ajk: Crystal structure of d(CGCGGATf5UCGCG): 5-Formyluridine:Guanosine Base-pair in B-DNA with Hoechst33258
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2010-06-07
Authors: Tsunoda, M., Sakaue, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 3ajl: Crystal structure of d(CGCGGATf5UCGCG): 5-Formyluridine:guanosine Base-pair in B-DNA with DAPI
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2010-06-07
Authors: Tsunoda, M., Sakaue, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 3ajm: Crystal structure of programmed cell death 10 in complex with inositol 1,3,4,5-tetrakisphosphate
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-06-09
Authors: Ding, J., Wang, D.C.
PDB entry 3ajn: Structural basis of glycine amide on suppression of protein aggregation by high resolution X-ray analysis
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2010-06-09
Authors: Ito, L., Shiraki, K., Hasegawa, K., Kumasaka, T.
PDB entry 3ajo: Crystal structure of wild-type human ferritin H chain
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2010-06-11
Authors: Masuda, T., Mikami, B.
PDB entry 3ajp: Crystal structure of human H ferritin E140A mutant
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2010-06-11
Authors: Masuda, T., Mikami, B.
PDB entry 3ajq: Crystal structure of human H ferritin E140Q mutant
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2010-06-11
Authors: Masuda, T., Mikami, B.
PDB entry 3ajr: Crystal structure of L-3-Hydroxynorvaline bound L-Threonine dehydrogenase (Y137F) from Hyperthermophilic Archaeon Thermoplasma volcanium
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2010-06-14
Authors: Yoneda, K., Sakuraba, H., Ohshima, T.
PDB entry 3ajv: Splicing endonuclease from Aeropyrum pernix
Classification: HYDROLASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-06-19
Authors: Yoshinari, S., Watanabe, Y., Okuda, M., Shiba, T., Inaoka, K.D., Kurisu, G.
PDB entry 3ajw: Structure of FliJ, a soluble component of flagellar type III export apparatus
Classification: PROTEIN TRANSPORT
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-06-23
Authors: Imada, K., Ibuki, T., Minamino, T., Namba, K.
PDB entry 3ajx: Crystal Structure of 3-Hexulose-6-Phosphate Synthase
Classification: LYASE
Source organism: Mycobacterium gastri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-06-24
Authors: Kita, A., Orita, I., Yurimoto, H., Kato, N., Sakai, Y., Miki, K.
PDB entry 3ajy: Crystal Structure of Ancestral Congerin Con-anc
Classification: SUGAR BINDING PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2010-06-29
Authors: Konno, A., Kitagawa, A., Watanabe, M., Ogawa, T., Shirai, T.
PDB entry 3ajz: Crystal Structure of Ancestral Congerin Con-anc
Classification: SUGAR BINDING PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2010-06-29
Authors: Konno, A., Kitagawa, A., Watanabe, M., Ogawa, T., Shirai, T.
PDB entry 3ak0: Crystal Structure of Ancestral Congerin Con-anc'-N28K
Classification: SUGAR BINDING PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2010-06-29
Authors: Konno, A., Kitagawa, A., Watanabe, M., Ogawa, T., Shirai, T.
PDB entry 3ak1: Superoxide dismutase from Aeropyrum pernix K1, apo-form
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2010-06-30
Authors: Nakamura, T., Uegaki, K.
PDB entry 3ak2: Superoxide dismutase from Aeropyrum pernix K1, Mn-bound form
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2010-06-30
Authors: Nakamura, T., Uegaki, K.
PDB entry 3ak3: Superoxide dismutase from Aeropyrum pernix K1, Fe-bound form
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2010-06-30
Authors: Nakamura, T., Uegaki, K.
PDB entry 3ak4: Crystal structure of NADH-dependent quinuclidinone reductase from agrobacterium tumefaciens
Classification: OXIDOREDUCTASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-07-07
Authors: Miyakawa, T., Kataoka, M., Takeshita, D., Nomoto, F., Nagata, K., Shimizu, S., Tanokura, M.
PDB entry 3ak5: Hemoglobin protease (Hbp) passenger missing domain-2
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-07-07
Authors: Nishimura, K., Park, S.-Y., Tame, J.R.H.
PDB entry 3ak8: Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
Classification: METAL BINDING PROTEIN, Oxidoreductase
Source organism: Salmonella enterica subsp. enterica serovar Kentucky
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2010-07-08
Authors: Miyamoto, T., Asahina, Y., Miyazaki, S., Shimizu, H., Ohto, U., Noguchi, S., Satow, Y.
PDB entry 3ak9: Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis, FE-soaked form
Classification: METAL BINDING PROTEIN, Oxidoreductase
Source organism: Salmonella enterica subsp. enterica serovar Kentucky
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2010-07-08
Authors: Miyamoto, T., Asahina, Y., Miyazaki, S., Shimizu, H., Ohto, U., Noguchi, S., Satow, Y.
PDB entry 3aka: Structural basis for prokaryotic calcium-mediated regulation by a Streptomyces coelicolor calcium-binding protein
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-07-09
Authors: Zhao, X., Pang, H., Wang, S., Zhou, W., Yang, K., Bartlam, M.
PDB entry 3akb: Structural basis for prokaryotic calcium-mediated regulation by a Streptomyces coelicolor calcium-binding protein
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2010-07-09
Authors: Zhao, X., Pang, H., Wang, S., Zhou, W., Yang, K., Bartlam, M.
PDB entry 3akc: Crystal structure of CMP kinase in complex with CDP and ADP from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2010-07-12
Authors: Mega, R., Nakagawa, N., Kuramitsu, S., Masui, R.
PDB entry 3akd: Crystal structure of CMP kinase in complex with CDP from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-07-12
Authors: Mega, R., Nakagawa, N., Kuramitsu, S., Masui, R.
PDB entry 3akf: Crystal structure of exo-1,5-alpha-L-arabinofuranosidase
Classification: HYDROLASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-07-14
Authors: Fujimoto, Z., Ichinose, H., Kaneko, S.
PDB entry 3akg: Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-1,5-L-arabinofuranobiose
Classification: HYDROLASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-07-14
Authors: Fujimoto, Z., Ichinose, H., Kaneko, S.
PDB entry 3akh: Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-1,5-L-arabinofuranotriose
Classification: HYDROLASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-07-14
Authors: Fujimoto, Z., Ichinose, H., Kaneko, S.
PDB entry 3aki: Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-L-arabinofuranosyl azido
Classification: HYDROLASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-07-14
Authors: Fujimoto, Z., Ichinose, H., Kaneko, S.
PDB entry 3akj: Crystal structure of A Helicobacter pylori proinflammatory kinase CtkA
Classification: TRANSFERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-07-14
Authors: Kim, D.J., Suh, S.W.
PDB entry 3akk: Crystal structure of A Helicobacter pylori proinflammatory kinase CtkA
Classification: TRANSFERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-07-14
Authors: Kim, D.J., Suh, S.W.
PDB entry 3akl: Crystal structure of A Helicobacter pylori proinflammatory kinase CtkA
Classification: TRANSFERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-07-14
Authors: Kim, D.J., Suh, S.W.
PDB entry 3akm: X-ray structure of iFABP from human and rat with bound fluorescent fatty acid analogue
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-07-14
Authors: Wielens, J., Laguerre, A.J.K., Parker, M.W., Scanlon, M.J.
PDB entry 3akn: X-ray structure of iFABP from human and rat with bound fluorescent fatty acid analogue
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-07-14
Authors: Wielens, J., Laguerre, A.J.K., Parker, M.W., Scanlon, M.J.
PDB entry 3ako: Crystal Structure of the Reassembled Venus
Classification: FLUORESCENT PROTEIN
Source organism: Plant transformation vector pSITEII-4C1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-07-15
Authors: Isogai, M., Tada, T.
PDB entry 3akp: Crystal structure of xylanase from Trichoderma longibrachiatum
Classification: HYDROLASE
Source organism: Trichoderma longibrachiatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2010-07-15
Authors: Sugahara, M., Kunishima, N.
PDB entry 3akq: Crystal structure of xylanase from Trichoderma longibrachiatum
Classification: HYDROLASE
Source organism: Trichoderma longibrachiatum
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2010-07-15
Authors: Sugahara, M., Kunishima, N.
PDB entry 3akr: Crystal structure of xylanase from Trichoderma longibrachiatum
Classification: HYDROLASE
Source organism: Trichoderma longibrachiatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2010-07-15
Authors: Sugahara, M., Kunishima, N.
PDB entry 3aks: Crystal structure of xylanase from Trichoderma longibrachiatum
Classification: HYDROLASE
Source organism: Trichoderma longibrachiatum
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2010-07-15
Authors: Sugahara, M., Kunishima, N.
PDB entry 3akt: Crystal structure of xylanase from Trichoderma longibrachiatum
Classification: HYDROLASE
Source organism: Trichoderma longibrachiatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2010-07-15
Authors: Sugahara, M., Kunishima, N.
PDB entry 3aky: STABILITY, ACTIVITY AND STRUCTURE OF ADENYLATE KINASE MUTANTS
Classification: ADENYLATE KINASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 1995-07-28
Authors: Abele, U., Schulz, G.E.
PDB entry 3akz: Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with tRNAGln and a glutamyl-AMP analog
Classification: LIGASE/RNA
Source organism: Thermotoga maritima; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-07-19
Authors: Ito, T., Yokoyama, S.
PDB entry 3al0: Crystal structure of the glutamine transamidosome from Thermotoga maritima in the glutamylation state.
Classification: LIGASE/RNA
Source organism: synthetic construct; Thermotoga maritima; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.368 Å
Deposited: 2010-07-19
Authors: Ito, T., Yokoyama, S.
PDB entry 3al1: DESIGNED PEPTIDE ALPHA-1, RACEMIC P1BAR FORM
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.75 Å
Deposited: 1998-10-26
Authors: Patterson, W.R., Anderson, D.H., Degrado, W.F., Cascio, D., Eisenberg, D.
PDB entry 3al2: Crystal Structure of TopBP1 BRCT7/8
Classification: DNA BINDING PROTEIN, protein binding
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-07-22
Authors: Leung, C.C., Glover, J.N.
PDB entry 3al3: Crystal Structure of TopBP1 BRCT7/8-BACH1 peptide complex
Classification: DNA BINDING PROTEIN/PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2010-07-22
Authors: Leung, C.C., Glover, J.N.
PDB entry 3al4: Crystal structure of the swine-origin A (H1N1)-2009 influenza A virus hemagglutinin (HA) reveals similar antigenicity to that of the 1918 pandemic virus
Classification: VIRAL PROTEIN/VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.872 Å
Deposited: 2010-07-22
Authors: Zhang, W., Qi, J.X., Shi, Y., Li, Q., Yan, J.H., Gao, G.F.
PDB entry 3al5: Crystal structure of Human TYW5
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.503 Å
Deposited: 2010-07-26
Authors: Kato, M., Araiso, Y., Ishitani, R., Nureki, O.
PDB entry 3al6: Crystal structure of Human TYW5
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-07-26
Authors: Kato, M., Araiso, Y., Ishitani, R., Nureki, O.
PDB entry 3al7: Recombinant thaumatin I at 1.1 A
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2010-07-27
Authors: Masuda, T., Mikami, B., Kitabatake, N.
PDB entry 3al8: Plexin A2 / Semaphorin 6A complex
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2010-07-28
Authors: Nogi, T., Yasui, N., Mihara, E., Takagi, J.
PDB entry 3al9: Mouse Plexin A2 extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-07-28
Authors: Nogi, T., Yasui, N., Mihara, E., Takagi, J.
PDB entry 3ala: Crystal structure of vascular adhesion protein-1 in space group C2
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2010-07-29
Authors: Ernberg, K.E., McGrath, A.P., Guss, J.M.
PDB entry 3alb: Cyclic Lys48-linked tetraubiquitin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2010-07-29
Authors: Satoh, T., Sakata, E., Yamamoto, S., Yamaguchi, Y., Sumiyoshi, A., Wakatsuki, S., Kato, K.
PDB entry 3alc: ETHANOL REGULON TRANSCRIPTIONAL ACTIVATOR DNA-BINDING DOMAIN FROM ASPERGILLUS NIDULANS
Classification: DNA BINDING PROTEIN
Source organism: Emericella nidulans
Experimental method: SOLUTION NMR
Deposited: 1999-03-11
Authors: Cerdan, R., Cahuzac, B., Felenbok, B., Guittet, E.
PDB entry 3ald: Crystal structure of sweet-tasting protein Thaumatin I at 1.10 A
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2010-07-29
Authors: Masuda, T., Mikami, B., Kitabatake, N.
PDB entry 3ale: A type III polyketide synthase that produces diarylheptanoid
Classification: TRANSFERASE
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-08-03
Authors: Morita, H., Kato, R., Sugio, S., Abe, I.
PDB entry 3alf: Crystal Structure of Class V Chitinase from Nicotiana tobaccum
Classification: HYDROLASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2010-08-03
Authors: Numata, T., Osawa, T., Ohnuma, T., Fukamizo, T.
PDB entry 3alg: Crystal Structure of Class V Chitinase (E115Q mutant) from Nicotiana tobaccum in complex with NAG4
Classification: HYDROLASE
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2010-08-03
Authors: Numata, T., Osawa, T., Ohnuma, T., Fukamizo, T.
PDB entry 3alj: Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, reduced form
Classification: OXIDOREDUCTASE
Source organism: Mesorhizobium loti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2010-08-04
Authors: Kobayashi, J., Yoshida, H., Yoshikane, Y., Kamitori, S., Yagi, T.
PDB entry 3all: Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant Y270A
Classification: OXIDOREDUCTASE
Source organism: Mesorhizobium loti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2010-08-04
Authors: Kobayashi, J., Yoshida, H., Yoshikane, Y., Kamitori, S., Yagi, T.
PDB entry 3alm: Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant C294A
Classification: OXIDOREDUCTASE
Source organism: Mesorhizobium loti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2010-08-04
Authors: Kobayashi, J., Yoshida, H., Yoshikane, Y., Kamitori, S., Yagi, T.
PDB entry 3aln: Crystal Structure of human non-phosphorylated MKK4 kinase domain complexed with AMP-PNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-08-04
Authors: Matsumoto, T., Kinoshita, T., Kirii, Y., Yokota, K., Hamada, K., Tada, T.
PDB entry 3alo: Crystal structure of human non-phosphorylated MKK4 kinase domain ternary complex with AMP-PNP and p38 peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2010-08-04
Authors: Matsumoto, T., Kinoshita, T., Kirii, Y., Yokota, K., Hamada, K., Tada, T.
PDB entry 3alp: Cell adhesion protein
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.804 Å
Deposited: 2010-08-05
Authors: Narita, H., Nakagawa, A., Suzuki, M.
PDB entry 3alq: Crystal structure of TNF-TNFR2 complex
Classification: CYTOKINE/CYTOKINE RECEPTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-08-06
Authors: Mukai, Y., Nakamura, T., Yamagata, Y., Tsutsumi, Y.
PDB entry 3alr: Crystal structure of Nanos
Classification: METAL BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2010-08-06
Authors: Hashimoto, H., Hara, K., Hishiki, A., Kawaguchi, S., Shichijo, N., Nakamura, K., Unzai, S., Tamaru, Y., Shimizu, T., Sato, M.
PDB entry 3als: Crystal structure of CEL-IV
Classification: SUGAR BINDING PROTEIN
Source organism: Cucumaria echinata
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-08-07
Authors: Hatakeyama, T., Hozawa, T., Ishii, K., Kamiya, T., Goda, S., Kusunoki, M., Unno, H.
PDB entry 3alt: Crystal structure of CEL-IV complexed with Melibiose
Classification: SUGAR BINDING PROTEIN
Source organism: Cucumaria echinata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-08-07
Authors: Hatakeyama, T., Hozawa, T., Ishii, K., Kamiya, T., Goda, S., Kusunoki, M., Unno, H.
PDB entry 3alu: Crystal structure of CEL-IV complexed with Raffinose
Classification: SUGAR BINDING PROTEIN
Source organism: Cucumaria echinata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2010-08-07
Authors: Hatakeyama, T., Hozawa, T., Ishii, K., Kamiya, T., Goda, S., Kusunoki, M., Unno, H.
PDB entry 3alw: Crystal structure of the measles virus hemagglutinin bound to its cellular receptor SLAM (Form I, MV-H-SLAM(N102H/R108Y) fusion)
Classification: viral protein/membrane protein
Source organism: Measles virus; Saguinus oedipus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2010-08-09
Authors: Hashiguchi, T., Ose, T., Kubota, M., Maita, N., Kamishikiryo, J., Maenaka, K., Yanagi, Y.
PDB entry 3alx: Crystal structure of the measles virus hemagglutinin bound to its cellular receptor SLAM (MV-H(L482R)-SLAM(N102H/R108Y) fusion)
Classification: Viral Protein/membrane protein
Source organism: Measles morbillivirus; Saguinus oedipus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2010-08-09
Authors: Hashiguchi, T., Ose, T., Kubota, M., Maita, N., Kamishikiryo, J., Maenaka, K., Yanagi, Y.
PDB entry 3aly: Crystal Structure of RNase HI from Sulfolobus tokodaii with C-terminal deletion
Classification: HYDROLASE
Source organism: Sulfolobus tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2010-08-10
Authors: Angkawidjaja, C., Takano, K., Kanaya, S.
PDB entry 3alz: Crystal structure of the measles virus hemagglutinin bound to its cellular receptor SLAM (Form I)
Classification: viral protein/membrane protein
Source organism: Measles virus; Saguinus oedipus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.515 Å
Deposited: 2010-08-11
Authors: Hashiguchi, T., Ose, T., Kubota, M., Maita, N., Kamishikiryo, J., Maenaka, K., Yanagi, Y.
PDB entry 3am1: Crystal structure of O-Phosphoseryl-tRNA kinase complexed with anticodon-stem/loop truncated tRNA(Sec)
Classification: TRANSFERASE/RNA
Source organism: Methanocaldococcus jannaschii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-08-11
Authors: Araiso, Y., Ishitani, R., Nureki, O.
PDB entry 3am2: Clostridium perfringens enterotoxin
Classification: TOXIN
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2010-08-12
Authors: Kitadokoro, K., Nishimura, K., Kamitani, S., Kimura, J., Fukui, A., Abe, H., Horiguchi, Y.
PDB entry 3am3: A372M mutant of Enoyl-ACP Reductase from Plasmodium falciparum (PfENR) in complex with triclosan
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2010-08-14
Authors: Maity, K., Banerjee, T., Narayanappa, P., Surolia, N., Surolia, A., Suguna, K.
PDB entry 3am4: A372M mutant of Enoyl-ACP Reductase from Plasmodium falciparum (PfENR) in complex with triclosan variant T1
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2010-08-14
Authors: Maity, K., Banerjee, T., Narayanappa, P., Surolia, N., Surolia, A., Suguna, K.
PDB entry 3am5: K316A mutant of Enoyl-ACP Reductase from Plasmodium falciparum (PfENR) in complex with triclosan
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2010-08-14
Authors: Maity, K., Banerjee, T., Narayanappa, P., Surolia, N., Surolia, A., Suguna, K.
PDB entry 3am6: Crystal structure of the proton pumping rhodopsin AR2 from marine alga Acetabularia acetabulum
Classification: TRANSPORT PROTEIN
Source organism: Acetabularia acetabulum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2010-08-16
Authors: Wada, T., Yokoyama, S.
PDB entry 3am7: Crystal structure of the ternary complex of eIF4E-M7GTP-4EBP2 peptide
Classification: TRANSLATION/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2010-08-17
Authors: Tomoo, K., Fukuyo, A., In, Y., Ishida, T.
PDB entry 3am8: Crystal Structure of a Human Major Histocompatibilty complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2010-08-18
Authors: Chacko, J., Clements, C., Rossjohn, J.
PDB entry 3am9: Complex of bovine xanthine dehydrogenase and trihydroxy FYX-051
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2010-08-18
Authors: Matsumoto, K., Okamoto, K., Ashizawa, N., Matsumura, T., Kusano, T., Nishino, T.
PDB entry 3ama: Protein kinase A sixfold mutant model of Aurora B with inhibitor JNJ-7706621
Classification: TRANSFERASE/TRANSFERASE inhibitor
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2010-08-18
Authors: Pflug, A., de Oliveira, T.M., Bossemeyer, D., Engh, R.A.
PDB entry 3amb: Protein kinase A sixfold mutant model of Aurora B with inhibitor VX-680
Classification: TRANSFERASE/TRANSFERASE inhibitor
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2010-08-18
Authors: Pflug, A., de Oliveira, T.M., Bossemeyer, D., Engh, R.A.
PDB entry 3amc: Crystal structures of Thermotoga maritima Cel5A, apo form and dimer/au
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2010-08-19
Authors: Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Cheng, Y.S., Liu, J.R., Guo, R.T.
PDB entry 3amd: Crystal structures of Thermotoga maritima Cel5A, apo form and tetramer/au
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2010-08-19
Authors: Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Cheng, Y.S., Liu, J.R., Guo, R.T.
PDB entry 3ame: TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 Q9TQ44T
Classification: ANTIFREEZE PROTEIN
Source organism: Macrozoarces americanus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 1999-01-24
Authors: Graether, S.P., Deluca, C.I., Baardsnes, J., Hill, G.A., Davies, P.L., Jia, Z.
PDB entry 3amf: E13R mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2010-08-19
Authors: Sato, S., Nakanishi, T., Inoue, H., Kitamura, M.
PDB entry 3amg: Crystal structures of Thermotoga maritima Cel5A in complex with Cellobiose substrate, mutant form
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-08-20
Authors: Wu, T.H., Huang, C.H., Ko, T.P., Lai, H.L., Ma, Y., Cheng, Y.S., Liu, J.R., Guo, R.T.
PDB entry 3amh: crystal structure of cellulase 12A from Thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2010-08-20
Authors: Cheng, Y.-S., Ko, T.-P., Liu, J.-R., Guo, R.-T.
PDB entry 3ami: The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1
Classification: HYDROLASE
Source organism: Sphingomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2010-08-20
Authors: Maruyama, Y., Chuma, A., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3amj: The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1
Classification: HYDROLASE
Source organism: Sphingomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2010-08-20
Authors: Maruyama, Y., Chuma, A., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3amk: Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2010-08-20
Authors: Kakuta, Y., Chaen, K., Noguchi, J., Vu, N., Kimura, M.
PDB entry 3aml: Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2010-08-20
Authors: Kakuta, Y., Chaen, K., Noguchi, J., Vu, N., Kimura, M.
PDB entry 3amm: Cellotetraose complex of cellulase 12A from thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2010-08-20
Authors: Cheng, Y.-S., Ko, T.-P., Liu, J.-R., Guo, R.-T.
PDB entry 3amn: E134C-Cellobiose complex of cellulase 12A from thermotoga maritima
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2010-08-20
Authors: Cheng, Y.-S., Ko, T.-P., Liu, J.-R., Guo, R.-T.