LiteFold/PDB huggingface dataset:
PDB entry 5arg: SMYD2 in complex with SGC probe BAY-598
Classification: TRANSFERASE
Source organism: HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2015-09-24
Authors: Hillig, R.C., Badock, V., Barak, N., Stellfeld, T., Eggert, E., ter Laak, A., Weiske, J., Christ, C.D., Koehr, S., Stoeckigt, D., Mowat, J., Mueller, T., Fernandez-Montalvan, A.E., Hartung, I.V., Stresemann, C., Brumby, T., Weinmann, H.
PDB entry 5arh: Bovine mitochondrial ATP synthase state 2a
Classification: HYDROLASE
Source organism: BOS TAURUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.2 Å
Deposited: 2015-09-24
Authors: Zhou, A., Rohou, A., Schep, D.G., Bason, J.V., Montgomery, M.G., Walker, J.E., Grigorieff, N., Rubinstein, J.L.
PDB entry 5ari: Bovine mitochondrial ATP synthase state 2b
Classification: HYDROLASE
Source organism: BOS TAURUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.4 Å
Deposited: 2015-09-24
Authors: Zhou, A., Rohou, A., Schep, D.G., Bason, J.V., Montgomery, M.G., Walker, J.E., Grigorieff, N., Rubinstein, J.L.
PDB entry 5arj: crystal structure of porcine RNase 4 D80A mutant
Classification: HYDROLASE
Source organism: SUS SCROFA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-09-25
Authors: Liang, S., Acharya, K.R.
PDB entry 5ark: crystal structure of porcine RNase 4 in complex with dUMP
Classification: HYDROLASE
Source organism: SUS SCROFA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2015-09-25
Authors: Liang, S., Acharya, K.R.
PDB entry 5arl: crystal structure of porcine RNase 4 D80A mutant in complex with dCMP
Classification: HYDROLASE
Source organism: SUS SCROFA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2015-09-25
Authors: Liang, S., Acharya, K.R.
PDB entry 5arm: APO-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS
Classification: COPPER-BINDING PROTEIN
Source organism: METHYLOSINUS TRICHOSPORIUM
Experimental method: X-RAY DIFFRACTION
Resolution: 1.194 Å
Deposited: 2015-09-25
Authors: Vita, N., Landolfi, G., Basle, A., Platsaki, S., Waldron, K., Dennison, C.
PDB entry 5arn: Cu(I)-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS
Classification: COPPER-BINDING PROTEIN
Source organism: METHYLOSINUS TRICHOSPORIUM
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-09-25
Authors: Vita, N., Landolfi, G., Basle, A., Platsaki, S., Waldron, K., Dennison, C.
PDB entry 5at1: STRUCTURAL CONSEQUENCES OF EFFECTOR BINDING TO THE T STATE OF ASPARTATE CARBAMOYLTRANSFERASE. CRYSTAL STRUCTURES OF THE UNLIGATED AND ATP-, AND CTP-COMPLEXED ENZYMES AT 2.6-ANGSTROMS RESOLUTION
Classification: TRANSFERASE (CARBAMOYL-P,ASPARTATE)
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 1990-04-26
Authors: Stevens, R.C., Gouaux, J.E., Lipscomb, W.N.
PDB entry 5aui: Crystal structure of Ferredoxin from Thermosynechococcus elongatus
Classification: ELECTRON TRANSPORT
Source organism: Thermosynechococcus elongatus BP-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.499 Å
Deposited: 2015-04-21
Authors: Kurisu, G., Shinmura, K.
PDB entry 5auj: Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus furiosus DSM 3638
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-04-21
Authors: Watanabe, Y., Oyama, T.
PDB entry 5auk: Crystal structure of the Ga-substituted Ferredoxin
Classification: ELECTRON TRANSPORT
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2015-04-24
Authors: Kurisu, G., Muraki, N., Taya, M., Hase, T.
PDB entry 5aul: PI3K p85 C-terminal SH2 domain/CD28-derived peptide complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2015-04-28
Authors: Inaba, S., Numoto, N., Morii, H., Ikura, T., Oda, M., Ito, N.
PDB entry 5aum: Crystal structure of a Fab fragment with the ligand peptide
Classification: IMMUNE SYSTEM/PEPTIDE
Source organism: Rattus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-04-30
Authors: Kitago, Y., Takagi, J.
PDB entry 5aun: Crystal structure of the HypAB-Ni complex
Classification: METAL BINDING PROTEIN/HYDROLASE
Source organism: Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2015-05-27
Authors: Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
PDB entry 5auo: Crystal structure of the HypAB-Ni complex (AMPPCP)
Classification: METAL BINDING PROTEIN/HYDROLASE
Source organism: Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-05-27
Authors: Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
PDB entry 5aup: Crystal structure of the HypAB complex
Classification: METAL BINDING PROTEIN/HYDROLASE
Source organism: Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.102 Å
Deposited: 2015-05-27
Authors: Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
PDB entry 5auq: Crystal structure of ATPase-type HypB in the nucleotide free state
Classification: HYDROLASE
Source organism: Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.525 Å
Deposited: 2015-05-27
Authors: Watanabe, S., Kawashima, T., Nishitani, Y., Miki, K.
PDB entry 5aur: Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at N-terminal region
Classification: ELECTRON TRANSPORT
Source organism: Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2015-06-08
Authors: Ren, C., Nagao, S., Yamanaka, M., Kamikubo, H., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.
PDB entry 5aus: Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region
Classification: ELECTRON TRANSPORT
Source organism: Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2015-06-08
Authors: Ren, C., Nagao, S., Yamanaka, M., Komori, H., Shomura, Y., Higuchi, Y., Hirota, S.
PDB entry 5aut: Crystal structure of DAPK1 in complex with ANS.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M., Kosaka, Y.
PDB entry 5auu: Crystal structure of DAPK1 in complex with luteolin.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5auv: Crystal structure of DAPK1 in complex with apigenin.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5auw: Crystal structure of DAPK1 in complex with quercetin.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5aux: Crystal structure of DAPK1 in complex with kaempferol.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5auy: Crystal structure of DAPK1 in complex with morin.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5auz: Crystal structure of DAPK1 in complex with genistein.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5av0: Crystal structure of DAPK1 in complex with 7,3',4'-trihydroxyisoflavone.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5av1: Crystal structure of DAPK1 in the presence of bromide ions.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5av2: Crystal structure of DAPK1-kaempferol complex in the presence of bromide ions.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.502 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5av3: Crystal structure of DAPK1-kaempferol complex in the presence of iodide ions.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5av4: Crystal structure of DAPK1-genistein complex in the presence of bromide ions.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-06-10
Authors: Yokoyama, T., Mizuguchi, M.
PDB entry 5av5: human nucleosome core particle
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-06-11
Authors: Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
PDB entry 5av6: human nucleosome core particle
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-06-12
Authors: Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
PDB entry 5av7: Crystal structure of Calsepa lectin in complex with bisected glycan
Classification: SUGAR BINDING PROTEIN
Source organism: Calystegia sepium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-06-12
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5av8: human nucleosome core particle
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-06-12
Authors: Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
PDB entry 5av9: human nucleosome core particle
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-06-12
Authors: Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
PDB entry 5ava: Crystal structure of PHA-E lectin in complex with bisected glycan
Classification: SUGAR BINDING PROTEIN
Source organism: Phaseolus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-06-12
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5avb: human nucleosome core particle
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-06-12
Authors: Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
PDB entry 5avc: human nucleosome core particle
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-06-12
Authors: Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
PDB entry 5avd: The 0.86 angstrom structure of elastase crystallized in high-strength agarose hydrogel
Classification: ISOMERASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 0.86 Å
Deposited: 2015-06-15
Authors: Sugiyama, S., Shimizu, N., Maruyama, M., Sazaki, G., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H.
PDB entry 5ave: The ligand binding domain of Mlp37 with serine
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-06-15
Authors: Takahashi, Y., Sumita, K., Uchida, Y., Nishiyama, S., Kawagishi, I., Imada, K.
PDB entry 5avf: The ligand binding domain of Mlp37 with taurine
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2015-06-15
Authors: Takahashi, Y., Sumita, K., Uchida, Y., Nishiyama, S., Kawagishi, I., Imada, K.
PDB entry 5avg: The 0.95 angstrom structure of thaumatin crystallized in high-strength agarose hydrogel
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2015-06-16
Authors: Sugiyama, S., Shimizu, N., Maruyama, M., Sazaki, G., Hirose, M., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H.
PDB entry 5avh: The 0.90 angstrom structure (I222) of glucose isomerase crystallized in high-strength agarose hydrogel
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 2015-06-16
Authors: Sugiyama, S., Shimizu, N., Maruyama, N., Sazaki, G., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H.
PDB entry 5avi: Crystal structure of LXRalpha in complex with tert-butyl benzoate analog, compound 4
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-06-16
Authors: Matsui, Y., Hanzawa, H., Tamaki, K.
PDB entry 5avj: Crystal structure of proteinase K from Engyodontium album
Classification: HYDROLASE
Source organism: Engyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2015-06-17
Authors: Sugahara, M., Numata, K.
PDB entry 5avk: Crystal structure of proteinase K from Engyodontium album
Classification: HYDROLASE
Source organism: Engyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2015-06-17
Authors: Sugahara, M., Numata, K.
PDB entry 5avl: Crystal structure of LXRalpha in complex with tert-butyl benzoate analog, compound 32b
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-06-17
Authors: Matsui, Y., Hanzawa, H., Tamaki, K.
PDB entry 5avm: Crystal structures of 5-aminoimidazole ribonucleotide (AIR) synthetase, PurM, from Thermus thermophilus
Classification: LIGASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-06-23
Authors: Kanagawa, M., Baba, S., Watanabe, Y., Nakagawa, N., Ebihara, A., Sampei, G., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 5avn: The 1.03 angstrom structure (P212121) of glucose isomerase crystallized in high-strength agarose hydrogel
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2015-06-23
Authors: Sugiyama, S., Shimizu, N., Maruyama, N., Sazaki, G., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H.
PDB entry 5avo: Crystal structure of the reduced form of homoserine dehydrogenase from Sulfolobus tokodaii.
Classification: OXIDOREDUCTASE
Source organism: Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-06-25
Authors: Goto, M., Yoshimune, K., Kaneko, R.
PDB entry 5avp: Crystal structure of Geodermatophilus obscurus L-ribose isomerase
Classification: ISOMERASE
Source organism: Geodermatophilus obscurus DSM 43160
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-06-29
Authors: Terami, Y., Kamitori, S.
PDB entry 5avq: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 0.75 min.
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avr: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 1.5 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avs: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 3.5 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avt: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 5 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avu: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 7.0 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avv: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 8.5 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avw: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 16.5 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avx: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 20 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avy: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 20 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5avz: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 55 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw0: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 55 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw1: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 85 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw2: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 85 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw3: Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 100 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw4: Kinetics by X-ray crystallography: Rb+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 1.5 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw5: Kinetics by X-ray crystallography: Rb+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 2.2 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw6: Kinetics by X-ray crystallography: Rb+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 5.5 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw7: Kinetics by X-ray crystallography: Rb+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 11.3 min
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw8: Kinetics by X-ray crystallography: E2.MgF42-.2RB+ crystal
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5aw9: Kinetics by X-ray crystallography: native E2.MgF42-.2K+ crystal for Rb+ bound crystals
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-07-01
Authors: Ogawa, H., Cornelius, F., Hirata, A., Toyoshima, C.
PDB entry 5awa: Crystal structure of human TLR8 in complex with MB-568
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-07-03
Authors: Tanji, H., Ohto, U., Shimizu, T.
PDB entry 5awb: Crystal structure of human TLR8 in complex with N1-3-aminomethylbenzyl (meta-amine)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-07-03
Authors: Tanji, H., Ohto, U., Shimizu, T.
PDB entry 5awc: Crystal structure of human TLR8 in complex with MB-564
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-07-03
Authors: Tanji, H., Ohto, U., Shimizu, T.
PDB entry 5awd: Crystal structure of human TLR8 in complex with N1-4-aminomethylbenzyl (IMDQ)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-07-03
Authors: Tanji, H., Ohto, U., Shimizu, T.
PDB entry 5awe: Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-beta-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2015-07-03
Authors: Nakabayashi, M., Shibata, N., Kanagawa, M., Nakagawa, N., Kuramitsu, S., Higuchi, Y.
PDB entry 5awf: Crystal structure of SufB-SufC-SufD complex from Escherichia coli
Classification: TRANSPORT PROTEIN/PROTEIN BINDING
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.957 Å
Deposited: 2015-07-03
Authors: Hirabayashi, K., Wada, K.
PDB entry 5awg: Crystal structure of Hg-bound SufB-SufC-SufD complex from Escherichia coli
Classification: TRANSPORT PROTEIN/PROTEIN BINDING
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 4.278 Å
Deposited: 2015-07-03
Authors: Hirabayashi, K., Wada, K.
PDB entry 5awh: Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Rhodobacter sphaeroides; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-07-03
Authors: Miyoshi, T., Ito, K., Murakami, R., Uchiumi, T.
PDB entry 5awi: Domain-swapped cytochrome cb562 dimer
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-07-03
Authors: Miyamoto, T., Kuribayashi, M., Nagao, S., Shomura, Y., Higuchi, Y., Hirota, S.
PDB entry 5awj: Crystal structure of VDR-LBD/partial agonist complex: 22S-hexyl analogue
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-07-04
Authors: Anami, Y., Itoh, T., Inaba, Y., Nakabayashi, M., Ikura, T., Ito, N., Yamamoto, K.
PDB entry 5awk: Crystal structure of VDR-LBD/partial agonist complex: 22S-ethyl analogue
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2015-07-04
Authors: Anami, Y., Itoh, T., Yamamoto, K.
PDB entry 5awl: CRYSTAL STRUCTURE OF A MUTANT OF CHIGNOLIN, CLN025
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.11 Å
Deposited: 2015-07-05
Authors: Akiba, T., Ishimura, M., Odahara, T., Harata, K., Honda, S.
PDB entry 5awm: The Crystal Structure of JNK from Drosophila melanogaster Reveals an Evolutionarily Conserved Topology with that of Mammalian JNK Proteins.
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2015-07-06
Authors: Boonserm, P.
PDB entry 5awn: Crystal structure of Human anti-HIV-1 broadly neutralizing antibody 3BC176 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.887 Å
Deposited: 2015-07-06
Authors: Lee, J.H., Wilson, I.A., Ward, A.B.
PDB entry 5awo: Arthrobacter globiformis T6 isomalto-dextranse
Classification: HYDROLASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2015-07-08
Authors: Tonozuka, T.
PDB entry 5awp: Arthrobacter globiformis T6 isomalto-dextranase complexed with isomaltose
Classification: HYDROLASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-07-08
Authors: Tonozuka, T.
PDB entry 5awq: Arthrobacter globiformis T6 isomalto-dextranse complexed with panose
Classification: HYDROLASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2015-07-08
Authors: Tonozuka, T.
PDB entry 5awr: Crystal structure of the SGIP1 mu homology domain in the P4212 space group
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.502 Å
Deposited: 2015-07-08
Authors: Shimada, A., Yamaguchi, A., Kohda, D.
PDB entry 5aws: Crystal structure of the SGIP1 mu homology domain in the P1 space group
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2015-07-08
Authors: Shimada, A., Yamaguchi, A., Kohda, D.
PDB entry 5awt: Crystal structure of the SGIP1 mu homology domain in complex with an Eps15 fragment containing two DPF motifs (YDPFGGDPFKG)
Classification: ENDOCYTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.702 Å
Deposited: 2015-07-08
Authors: Shimada, A., Yamaguchi, A., Kohda, D.
PDB entry 5awu: Crystal structure of the SGIP1 mu homology domain in complex with an Eps15 fragment containing two DPF motifs (YDPFKGSDPFA)
Classification: ENDOCYTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-07-08
Authors: Shimada, A., Yamaguchi, A., Kohda, D.
PDB entry 5awv: Crystal structure of glycopeptide hexose oxidase DBV29 complexed with teicoplanin
Classification: OXIDOREDUCTASE/ANTIBIOTIC
Source organism: Nonomuraea sp. ATCC 39727; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2015-07-09
Authors: Liu, Y.C., Li, T.L.
PDB entry 5aww: Precise Resting State of Thermus thermophilus SecYEG
Classification: PROTEIN TRANSPORT/IMMUNE SYSTEM
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.724 Å
Deposited: 2015-07-10
Authors: Tanaka, Y., Sugano, Y., Takemoto, M., Kusakizako, T., Kumazaki, K., Ishitani, R., Nureki, O., Tsukazaki, T.
PDB entry 5awx: Crystal structure of Human PTPRZ D1 domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2015-07-10
Authors: Sugawara, H.
PDB entry 5awz: Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.57 angstrom
Classification: PROTON TRANSPORT
Source organism: Acetabularia acetabulum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2015-07-10
Authors: Furuse, M., Hosaka, T., Kimura-Someya, T., Yokoyama, S., Shirouzu, M.
PDB entry 5ax0: Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.52 angstrom
Classification: PROTON TRANSPORT
Source organism: Acetabularia acetabulum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.521 Å
Deposited: 2015-07-10
Authors: Furuse, M., Hosaka, T., Kimura-Someya, T., Yokoyama, S., Shirouzu, M.
PDB entry 5ax1: Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.80 angstrom
Classification: PROTON TRANSPORT
Source organism: Acetabularia acetabulum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.803 Å
Deposited: 2015-07-10
Authors: Furuse, M., Hosaka, T., Kimura-Someya, T., Yokoyama, S., Shirouzu, M.
PDB entry 5ax2: Crystal structure of S.cerevisiae Kti11p
Classification: METAL BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-07-13
Authors: Kumar, A., Nagarathinam, K., Tanabe, M., Balbach, J.
PDB entry 5ax3: Crystal structure of ERK2 complexed with allosteric and ATP-competitive inhibitors.
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.984 Å
Deposited: 2015-07-14
Authors: Kinoshita, T., Sugiyama, H., Mori, Y., Takahashi, N., Tomonaga, A.
PDB entry 5ax6: The crystal structure of CofB, the minor pilin subunit of CFA/III from human enterotoxigenic Escherichia coli.
Classification: CELL ADHESION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2015-07-16
Authors: Kawahara, K., Oki, K., Fukaksua, F., Maruno, T., Kobayashi, Y., Daisuke, M., Taniguchi, T., Honda, T., Iida, T., Nakamura, S., Ohkubo, T.
PDB entry 5ax7: yeast pyruvyltransferase Pvg1p
Classification: TRANSFERASE
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2015-07-16
Authors: Kanekiyo, M., Yoritsune, K., Yoshinaga, S., Higuchi, Y., Takegawa, K., Kakuta, Y.
PDB entry 5ax8: Recombinant expression, purification and preliminary crystallographic studies of the mature form of human mitochondrial aspartate aminotransferase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.989 Å
Deposited: 2015-07-20
Authors: Jiang, X., Wang, J., Chang, H., Zhou, Y.
PDB entry 5ax9: Crystal structure of the kinase domain of human TRAF2 and NCK-interacting protein kinase in complex with compund 9
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-07-21
Authors: Ohbayashi, N., Kukimoto-Niino, M., Yamada, T., Shirouzu, M.
PDB entry 5axa: Crystal structure of mouse SAHH complexed with adenosine
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2015-07-24
Authors: Kusakabe, Y., Ishihara, M., Tanaka, N.
PDB entry 5axb: Crystal structure of mouse SAHH complexed with noraristeromycin
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2015-07-24
Authors: Kusakabe, Y., Ishihara, M., Tanaka, N.
PDB entry 5axc: Crystal structure of mouse SAHH complexed with 3'-keto aristeromycin
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2015-07-24
Authors: Kusakabe, Y., Ishihara, M., Tanaka, N.
PDB entry 5axd: Crystal structure of mouse SAHH complexed with ribavirin
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-07-24
Authors: Kusakabe, Y., Ishihara, M., Tanaka, N.
PDB entry 5axe: Crystal Structure Analysis of DNA Duplexes containing sulfoamide-bridged nucleic acid (SuNA-NH)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2015-07-28
Authors: Mitsuoka, Y., Aoyama, H., Kugimiya, A., Fujimura, Y., Yamamoto, T., Waki, R., Wada, F., Tahara, S., Sawamura, M., Noda, M., Hari, Y., Obika, S.
PDB entry 5axf: Crystal Structure Analysis of DNA Duplexes containing sulfoamide-bridged nucleic acid (SuNA-NMe)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2015-07-28
Authors: Mitsuoka, Y., Aoyama, H., Kugimiya, A., Fujimura, Y., Yamamoto, T., Waki, R., Wada, F., Tahara, S., Sawamura, M., Noda, M., Hari, Y., Obika, S.
PDB entry 5axg: Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus
Classification: HYDROLASE
Source organism: Thermoanaerobacter pseudethanolicus ATCC 33223
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-07-29
Authors: Suzuki, N., Kishine, N., Fujimoto, Z., Sakurai, M., Momma, M., Ko, J.A., Nam, S.H., Kimura, A., Kim, Y.M.
PDB entry 5axh: Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus, D312G mutant in complex with isomaltohexaose
Classification: HYDROLASE
Source organism: Thermoanaerobacter pseudethanolicus ATCC 33223
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-07-29
Authors: Suzuki, N., Kishine, N., Fujimoto, Z., Sakurai, M., Momma, M., Ko, J.A., Nam, S.H., Kimura, A., Kim, Y.M.
PDB entry 5axi: Crystal structure of Cbl-b TKB domain in complex with Cblin
Classification: LIGASE/LIGASE inhibitor
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-07-29
Authors: Ohno, A., Maita, N., Ochi, A., Nakao, R., Nikawa, T.
PDB entry 5axk: Crystal structure of Thg1 like protein (TLP)
Classification: TRANSFERASE
Source organism: Methanosarcina acetivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2015-07-31
Authors: Kimura, S., Suzuki, T., Yu, J., Kato, K., Yao, M.
PDB entry 5axl: Crystal structure of Thg1 like protein (TLP) with GTP
Classification: TRANSFERASE
Source organism: Methanosarcina acetivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.998 Å
Deposited: 2015-07-31
Authors: Kimura, S., Suzuki, T., Yu, J., Kato, K., Yao, M.
PDB entry 5axm: Crystal structure of Thg1 like protein (TLP) with tRNA(Phe)
Classification: Transferase/RNA
Source organism: Methanosarcina acetivorans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2015-07-31
Authors: Kimura, S., Suzuki, T., Yu, J., Kato, K., Yao, M.
PDB entry 5axn: Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP
Classification: Transferase/RNA
Source organism: Methanosarcina acetivorans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.703 Å
Deposited: 2015-07-31
Authors: Kimura, S., Suzuki, T., Yu, J., Kato, K., Yao, M.
PDB entry 5axo: Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to Hydrolyzed Meropenem
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2015-07-31
Authors: Wachino, J., Arakawa, Y.
PDB entry 5axp: Crystal structure of the catalytic domain of PDE10A complexed with 1-(2-fluoro-4-(2-oxo-1,3-oxazolidin-3-yl)phenyl)-5-methoxy-3-(1-phenyl-1H-pyrazol-5-yl)pyridazin-4(1H)-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2015-07-31
Authors: Oki, H., Zama, Y.
PDB entry 5axq: Crystal structure of the catalytic domain of PDE10A complexed with highly potent and brain-penetrant PDE10A Inhibitor with 2-oxindole scaffold
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2015-07-31
Authors: Oki, H., Zama, Y.
PDB entry 5axr: Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to 2-mercaptoethanesulfonate
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-07-31
Authors: Wachino, J., Arakawa, Y.
PDB entry 5axs: Crystal structure of CdCat-Fn
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2015-08-01
Authors: Abe, S., Nakajima, H., Kondo, M., Nakane, T., Nakao, T., Ueno, T., Watanabe, Y.
PDB entry 5axu: Crystal Structure of Cypovirus Polyhedra R13A Mutant
Classification: STRUCTURAL PROTEIN
Source organism: Bombyx mori cypovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-08-01
Authors: Abe, S., Ijiri, H., Negishi, H., Yamanaka, H., Sasaki, K., Hirata, K., Mori, H., Ueno, T.
PDB entry 5axv: Crystal Structure of Cypovirus Polyhedra R13K Mutant
Classification: STRUCTURAL PROTEIN
Source organism: Bombyx mori cypovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2015-08-01
Authors: Abe, S., Ijiri, H., Negishi, H., Yamanaka, H., Sasaki, K., Hirata, K., Mori, H., Ueno, T.
PDB entry 5axw: Crystal structure of Staphylococcus aureus Cas9 in complex with sgRNA and target DNA (TTGGGT PAM)
Classification: HYDROLASE/RNA/DNA
Source organism: Staphylococcus aureus subsp. aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-08-01
Authors: Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 5ay2: Crystal structure of RNA duplex containing C-Ag(I)-C base pairs
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2015-08-06
Authors: Kondo, J., Tada, Y., Dairaku, T., Saneyoshi, H., Okamoto, I., Tanaka, Y., Ono, A.
PDB entry 5ay3: Crystal structure of RNA duplex containing C-C base pairs
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2015-08-06
Authors: Kondo, J., Tada, Y., Dairaku, T., Saneyoshi, H., Okamoto, I., Tanaka, Y., Ono, A.
PDB entry 5ay4: Crystal structure of RNA duplex containing C-C base pairs obtained in the presence of Hg(II)
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-08-06
Authors: Kondo, J., Tada, Y., Dairaku, T., Saneyoshi, H., Okamoto, I., Tanaka, Y., Ono, A.
PDB entry 5ay6: 32 kDa Fragment of the Flagellar hook protein FlgE from Caulobacter crescentus
Classification: MOTOR PROTEIN
Source organism: Caulobacter crescentus CB15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.839 Å
Deposited: 2015-08-10
Authors: Yoon, Y.-H., Matsunami, H., Samatey, F.A.
PDB entry 5ay7: A psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase
Classification: HYDROLASE
Source organism: Aegilops speltoides subsp. speltoides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2015-08-10
Authors: Zheng, Y., Li, Y., Liu, W., Guo, R.T.
PDB entry 5ay8: Crystal structure of human nucleosome containing H3.Y
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-08-10
Authors: Kujirai, T., Horikoshi, N., Sato, K., Maehara, K., Machida, S., Osakabe, A., Kimura, H., Ohkawa, Y., Kurumizaka, H.
PDB entry 5ay9: Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1)
Classification: TRANSFERASE
Source organism: Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-08-11
Authors: Ye, Y., Saburi, W., Kato, K., Yao, M.
PDB entry 5aya: Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to L-captopril
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2015-08-12
Authors: Wachino, J., Arakawa, Y.
PDB entry 5ayb: Crystal structure of GH1 Beta-Glucosidase TD2F2 N223G mutant
Classification: HYDROLASE
Source organism: metagenomes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-08-12
Authors: Jo, T., Manninen, J.A., Matsuzawa, T., Uchiyama, T., Yaoi, K., Arakawa, T., Fushinobu, S.
PDB entry 5ayc: Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) in complexes with sulfate and 4-O-beta-D-mannosyl-D-glucose
Classification: TRANSFERASE
Source organism: Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-08-13
Authors: Ye, Y., Saburi, W., Kato, K., Yao, M.
PDB entry 5ayd: Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate
Classification: TRANSFERASE
Source organism: Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-08-13
Authors: Ye, Y., Saburi, W., Kato, K., Yao, M.
PDB entry 5aye: Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate and beta-(1,4)-mannobiose
Classification: TRANSFERASE
Source organism: Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-08-13
Authors: Ye, Y., Saburi, W., Kato, K., Yao, M.
PDB entry 5ayf: Crystal structure of SET7/9 in complex with cyproheptadine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.005 Å
Deposited: 2015-08-20
Authors: Niwa, H., Handa, N., Takemoto, Y., Ito, A., Tomabechi, Y., Umehara, T., Shirouzu, M., Yoshida, M., Yokoyama, S.
PDB entry 5ayg: Crystal Structure of the Human ROR gamma Ligand Binding Domain With 3g
Classification: DNA BINDING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-08-20
Authors: Noguchi, M., Doi, S., Nomura, A., Kikuwaka, M., Murase, K., Hirata, K., Kamada, M., Adachi, T.
PDB entry 5ayh: Structure of the entire dynein stalk region
Classification: MOTOR PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.011 Å
Deposited: 2015-08-21
Authors: Kurisu, G., Nishikawa, Y., Inatomi, M.
PDB entry 5ayi: Crystal structure of GH1 Beta-glucosidase TD2F2 N223Q mutant
Classification: HYDROLASE
Source organism: metagenomes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-08-21
Authors: Jo, T., Manninen, J.A., Matsuzawa, T., Uchiyama, T., Yaoi, K., Arakawa, T., Fushinobu, S.
PDB entry 5ayj: Hyperthermostable mutant of Bacillus sp. TB-90 Urate Oxidase - R298C
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. TB-90
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2015-08-21
Authors: Hibi, T., Kume, A., Kawamura, A., Itoh, T., Nishiya, Y.
PDB entry 5ayk: Crystal structure of ERdj5 form I
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2015-08-22
Authors: Watanabe, S., Maegawa, K., Inaba, K.
PDB entry 5ayl: Crystal structure of ERdj5 form II
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-08-22
Authors: Watanabe, S., Maegawa, K., Inaba, K.
PDB entry 5aym: Crystal structure of a bacterial homologue of iron transporter ferroportin in outward-facing state with soaked iron
Classification: TRANSPORT PROTEIN
Source organism: Bdellovibrio bacteriovorus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-08-25
Authors: Taniguchi, R., Kato, H.E., Font, J., Deshpande, C.N., Ishitani, R., Jormakka, M., Nureki, O.
PDB entry 5ayn: Crystal structure of a bacterial homologue of iron transporter ferroportin in outward-facing state
Classification: TRANSPORT PROTEIN
Source organism: Bdellovibrio bacteriovorus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.202 Å
Deposited: 2015-08-25
Authors: Taniguchi, R., Kato, H.E., Font, J., Deshpande, C.N., Ishitani, R., Jormakka, M., Nureki, O.
PDB entry 5ayo: Crystal structure of a bacterial homologue of iron transporter ferroportin in inward-facing state
Classification: TRANSPORT PROTEIN
Source organism: Bdellovibrio bacteriovorus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2015-08-25
Authors: Taniguchi, R., Kato, H.E., Font, J., Deshpande, C.N., Ishitani, R., Jormakka, M., Nureki, O.
PDB entry 5ayp: Crystal structure of Bacillus stearothermophilus Farnesyl pyrophosphate synthase
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2015-08-26
Authors: Makabe, K., Kijima, T.
PDB entry 5ayq: Structure-based site-directed photo-crosslinking analyses of multimeric cell-adhesive interactions of VGSC beta subunits
Classification: METAL TRANSPORT
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-09-01
Authors: Shimizu, H.
PDB entry 5ayr: The crystal structure of SAUGI/human UDG complex
Classification: HYDROLASE INHIBITOR
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-09-02
Authors: Wang, H.C., Ko, T.P., Huang, M.F., Wang, A.H.J.
PDB entry 5ays: Crystal structure of SAUGI/HSV UDG complex
Classification: HYDROLASE INHIBITOR
Source organism: Human herpesvirus 1 (strain 17); Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2015-09-02
Authors: Wang, H.C., Ko, T.P., Huang, M.F., Wang, A.H.J.
PDB entry 5ayt: Crystal structure of transthyretin in complex with L6
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-09-03
Authors: Yokoyama, T., Mizuguchi, M., Kai, H.
PDB entry 5ayu: Crystal structure of HyHEL-10 Fv
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-09-04
Authors: Nakanishi, T., Tsumoto, K., Yokota, A., Kondo, H., Kumagai, I.
PDB entry 5ayv: Crystal structure of archaeal ketopantoate reductase complexed with coenzyme A and 2-oxopantoate
Classification: OXIDOREDUCTASE
Source organism: Thermococcus kodakarensis KOD1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.647 Å
Deposited: 2015-09-08
Authors: Aikawa, Y., Nishitani, Y., Miki, K.