LiteFold/PDB huggingface dataset:
PDB entry 7dbf: The structure of the Arabidopsis thaliana guanosine deaminase
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-10-20
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dbg: Yeast CRM1e (apo) in complex with Ran-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2020-10-20
Authors: Sun, Q., Lei, Y.
PDB entry 7dbh: The mouse nucleosome structure containing H3mm18
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-10-20
Authors: Hirai, S., Takizawa, Y., Kujirai, T., Kurumizaka, H.
PDB entry 7dbi: Crystal structure of the peroxisomal acyl-CoA hydrolase MpaH
Classification: HYDROLASE
Source organism: Penicillium brevicompactum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-10-20
Authors: Li, S.Y., You, C.
PDB entry 7dbj: Crystal structure of human LDHB in complex with NADH, oxamate, and AXKO-0046
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.551 Å
Deposited: 2020-10-20
Authors: Sogabe, S., Miwa, M.
PDB entry 7dbk: Crystal structure of human LDHB in complex with NADH
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.802 Å
Deposited: 2020-10-20
Authors: Sogabe, S., Miwa, M.
PDB entry 7dbl: Acyl-CoA hydrolase MpaH' mutant S139A in complex with MPA
Classification: HYDROLASE
Source organism: Penicillium brevicompactum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2020-10-20
Authors: Li, S.Y., You, C.
PDB entry 7dbm: HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/M184V:DNA:dGTP ternary complex
Classification: TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2020-10-21
Authors: Yasutake, Y., Hattori, S.I., Tamura, N., Maeda, K.
PDB entry 7dbn: HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/M184V/F160M:DNA:dCTP ternary complex
Classification: TRANSFERASE/DNA
Source organism: Human immunodeficiency virus 1; Human immunodeficiency virus type 1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2020-10-21
Authors: Yasutake, Y., Hattori, S.I., Tamura, N., Maeda, K.
PDB entry 7dbo: DPBB domain of VCP-like ATPase from Thermoplasma acidophilum
Classification: CHAPERONE
Source organism: Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-10-21
Authors: Yagi, S., Tagami, S.
PDB entry 7dbp: Linker histone defines structure and self-association behaviour of the 177 bp human chromosome
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2020-10-21
Authors: Wang, S., Vogirala, K.V., Soman, A., Liu, Z.B.
PDB entry 7dbs: Crystal Structure Of Biotin Protein Ligase From Leishmania Major in complex with Biotin
Classification: LIGASE
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2020-10-21
Authors: Rajak, M., Sundd, M.
PDB entry 7dbt: Crystal structure of catalytic domain of Anhydrobiosis-related Mn-dependent Peroxidase (AMNP) from Ramazzottius varieornatus (Mn2+-bound form)
Classification: OXIDOREDUCTASE
Source organism: Ramazzottius varieornatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-21
Authors: Yoshida, Y., Satoh, T., Ota, C., Tanaka, S., Horikawa, D.D., Tomita, M., Kato, K., Arakawa, K.
PDB entry 7dbu: Crystal structure of catalytic domain of Anhydrobiosis-related Mn-dependent Peroxidase (AMNP) from Ramazzottius varieornatus (Zn2+-bound form)
Classification: OXIDOREDUCTASE
Source organism: Ramazzottius varieornatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-21
Authors: Yoshida, Y., Satoh, T., Ota, C., Tanaka, S., Horikawa, D.D., Tomita, M., Kato, K., Arakawa, K.
PDB entry 7dbw: PnpA1, the oxygenase component of a two-component para-nitrophenol hydroxylase from Rhodococcus imtechensis RKJ300
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus imtechensis RKJ300 = JCM 13270
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-10-22
Authors: Guo, Y., Zheng, J.T., Zhou, N.Y.
PDB entry 7dc0: Crystal structure of glycan-free Pseudomonas taiwanensis lectin
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudomonas taiwanensis DSM 21245
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2020-10-23
Authors: Oda, K., Matoba, Y.
PDB entry 7dc1: Crystal structure of human copper homeostatic proteins atox1
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-10-23
Authors: Wei, W., Zhao, J., Wang, F.
PDB entry 7dc3: Crystal structure of the MyRF ICA domain
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-23
Authors: Shi, N., Wu, P., Zhen, X.K., Li, B.W.
PDB entry 7dc4: Crystal structure of glycan-bound Pseudomonas taiwanensis lectin
Classification: SUGAR BINDING PROTEIN
Source organism: Pseudomonas taiwanensis DSM 21245
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2020-10-23
Authors: Oda, K., Matoba, Y.
PDB entry 7dc5: Crystal structure of fungal antifreeze protein with intermediate activity
Classification: ANTIFREEZE PROTEIN
Source organism: Typhula ishikariensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2020-10-23
Authors: Khan, N.M.M.U., Arai, T., Tsuda, S., Kondo, H.
PDB entry 7dc6: Giant panda MHC class I complexes
Classification: IMMUNE SYSTEM
Source organism: Ailuropoda melanoleuca; Canine coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2020-10-23
Authors: Yuan, H., Xia, C.
PDB entry 7dc7: Crystal structure of D12 Fab-ATP complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2020-10-23
Authors: Kawauchi, H., Fukami, T.A., Tatsumi, K., Torizawa, T., Mimoto, F.
PDB entry 7dc8: Crystal structure of Switch Ab Fab and hIL6R in complex with ATP
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.757 Å
Deposited: 2020-10-23
Authors: Kadono, S., Fukami, T.A., Kawauchi, H., Torizawa, T., Mimoto, F.
PDB entry 7dc9: The structure of the Arabidopsis thaliana guanosine deaminase mutant E82Q complex with guanosine
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-10-23
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dca: The structure of the Arabidopsis thaliana guanosine deaminase bound by xanthosine
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-10-23
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dcb: The structure of the Arabidopsis thaliana guanosine deaminase complexed with inosine
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-23
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dcc: S-3C1-F3b structure, all the three RBDs are in the up conformation and each of them associates with a 3C1 Fab
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2020-10-24
Authors: Cong, Y., Liu, C.X.
PDB entry 7dcd: Nonstructural protein 7 and 8 complex of SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2020-10-24
Authors: Zhang, C.H., Li, L., Su, D.
PDB entry 7dce: Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-10-26
Authors: Sakuragi, T., Kanai, R., Tsutsumi, A., Narita, H., Onishi, E., Miyazaki, T., Baba, T., Nakagawa, A., Kikkawa, M., Toyoshima, C., Nagata, S.
PDB entry 7dcf: Crystal structure of EHMT2 SET domain in complex with compound 10
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-10-26
Authors: Suzuki, M., Katayama, K.
PDB entry 7dcg: Alpha-glucosidase from Weissella cibaria BBK-1 bound with maltotriose
Classification: HYDROLASE
Source organism: Weissella cibaria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2020-10-26
Authors: Krusong, K., Wangpaiboon, K., Kim, S., Mori, T., Hakoshima, T.
PDB entry 7dch: Alpha-glucosidase from Weissella cibaria BBK-1 bound with acarbose
Classification: HYDROLASE
Source organism: Weissella cibaria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.692 Å
Deposited: 2020-10-26
Authors: Krusong, K., Wangpaiboon, K., Kim, S., Mori, T., Hakoshima, T.
PDB entry 7dci: Crystal structure of HSF2 DNA-binding domain in complex with 2-site HSE DNA in the head-to-head orientation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-10-26
Authors: Wei, L., Wei, L.
PDB entry 7dcj: Crystal structure of HSF1 DNA-binding domain in complex with 2-site HSE DNA in the head-to-head orientation
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.004 Å
Deposited: 2020-10-26
Authors: Feng, N., Liu, W.
PDB entry 7dck: Crystal structure of phosphodiesterase tw9814
Classification: HYDROLASE
Source organism: Epsilonproteobacteria bacterium (ex Lamellibrachia satsuma)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2020-10-26
Authors: Heo, Y., Yun, J.H., Park, J.H., Park, S.B., Cha, S.S., Lee, W.
PDB entry 7dcl: Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96I/A38S AB5
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-10-26
Authors: Song, W.J., Yu, J.
PDB entry 7dcm: Crystal structure of CITX
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.495 Å
Deposited: 2020-10-26
Authors: Xu, H., Wang, B., Su, X.D.
PDB entry 7dcn: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.695 Å
Deposited: 2020-10-26
Authors: Xu, H., Wang, B., Su, X.D.
PDB entry 7dco: Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom
Classification: SPLICING
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2020-10-26
Authors: Bai, R., Wan, R., Yan, C., Qi, J., Zhang, P., Lei, J., Shi, Y.
PDB entry 7dcp: cryo-EM structure of the DEAH-box helicase Prp2 and coactivator Spp2
Classification: SPLICING
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2020-10-26
Authors: Bai, R., Wan, R., Yan, C., Jia, Q., Zhang, P., Lei, J., Shi, Y.
PDB entry 7dcq: cryo-EM structure of the DEAH-box helicase Prp2
Classification: SPLICING
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-10-26
Authors: Bai, R., Wan, R., Yan, C., Jia, Q., Zhang, P., Lei, J., Shi, Y.
PDB entry 7dcr: cryo-EM structure of the DEAH-box helicase Prp2 in complex with its coactivator Spp2
Classification: SPLICING
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2020-10-26
Authors: Bai, R., Wan, R., Yan, C., Jia, Q., Zhang, P., Lei, J., Shi, Y.
PDB entry 7dcs: Crystal structure of HSF1 DNA-binding domain in complex with 3-site HSE DNA (23 bp)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-27
Authors: Feng, N., Liu, W.
PDB entry 7dct: Crystal structure of HSF1 DNA-binding domain in complex with 3-site HSE DNA (24 bp)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2020-10-27
Authors: Feng, N., Liu, W.
PDB entry 7dcu: Crystal structure of HSF2 DNA-binding domain in complex with 3-site HSE DNA (21 bp)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-10-27
Authors: Feng, N., Liu, W.
PDB entry 7dcv: Structure of the transmembrane domain of human PD-L1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-10-27
Authors: Maorong, W., Yunlei, C., Bo, O.Y.
PDB entry 7dcw: The structure of the Arabidopsis thaliana guanosine deaminase complexed with adenosine
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-27
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dcx: S-3C1-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 3C1 fab.
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2020-10-27
Authors: Cong, Y., Liu, C.X.
PDB entry 7dcy: Apo form of Mycoplasma genitalium RNase R
Classification: HYDROLASE
Source organism: Mycoplasma genitalium G37
Experimental method: X-RAY DIFFRACTION
Resolution: 1.972 Å
Deposited: 2020-10-27
Authors: Abula, A., Quan, X., Li, X., Yang, T., Li, T., Chen, Q., Ji, X.
PDB entry 7dcz: Crystal Structure of BACE1 in complex with N-{3-[(4S)-2-amino-4-methyl-4H-1,3-thiazin-4-yl]-4- fluorophenyl}-5-cyanopyridine-2-carboxamide
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-27
Authors: Koriyama, Y., Hori, A., Ito, H., Yonezawa, S., Baba, Y., Tanimoto, N., Ueno, T., Yamamoto, S., Yamamoto, T., Asada, N., Morimoto, K., Einaru, S., Sakai, K., Kanazu, T., Matsuda, A., Yamaguchi, Y., Oguma, T., Timmers, M., Tritsmans, L., Kusakabe, K.I., Kato, A., Sakaguchi, G.
PDB entry 7dd0: Crystal structure of the N-terminal domain of TagH from Bacillus subtilis
Classification: TRANSPROT PROTEIN, TRANSLOCASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-10-27
Authors: Ko, T.P., Yang, C.S., Wang, Y.C., Chen, Y.
PDB entry 7dd1: Crystal structure of SRPK1 in complex with a peptide inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-10-27
Authors: Li, Q.Y., Yung, K.W.Y., Ngo, J.C.K.
PDB entry 7dd2: S-3C1-F2 structure, two RBDs are up and one RBD is down, the two up RBD bind with a 3C1 fab.
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2020-10-27
Authors: Cong, Y., Liu, C.X.
PDB entry 7dd3: Cryo-EM structure of the pre-mRNA-loaded DEAH-box ATPase/helicase Prp2 in complex with Spp2
Classification: SPLICING
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-27
Authors: Bai, R., Wan, R., Yan, C., Qi, J., Zhang, P., Lei, J., Shi, Y.
PDB entry 7dd4: Solution structure of an RNA derived from the joint region of the TAR and PolyA stems of HIV-1 genomic RNA
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2020-10-27
Authors: Obayashi, C.M., Shinohara, Y., Masuda, T., Kawai, G.
PDB entry 7dd5: Structure of Calcium-Sensing Receptor in complex with NPS-2143
Classification: MEMBRANE PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-27
Authors: Wen, T.L., Yang, X., Shen, Y.Q.
PDB entry 7dd6: Structure of Ca2+/L-Trp-bonnd Calcium-Sensing Receptor in active state
Classification: MEMBRANE PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-27
Authors: Wen, T.L., Yang, X., Shen, Y.Q.
PDB entry 7dd7: Structure of Calcium-Sensing Receptor in complex with Evocalcet
Classification: MEMBRANE PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-27
Authors: Wen, T.L., Yang, X., Shen, Y.Q.
PDB entry 7dd8: S-3C1-F1 structure, one RBD is up and two RBDs are down, the up RBD binds with a 3C1 fab
Classification: VIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.5 Å
Deposited: 2020-10-28
Authors: Cong, Y., Liu, C.X.
PDB entry 7dd9: Cryo-EM structure of the Ams1 and Nbr1 complex
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12); Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2020-10-28
Authors: Zhang, J., Ye, K.
PDB entry 7dda: Envelope protein VP37 a crystal structure from White Spot Syndrome Virus
Classification: VIRAL PROTEIN
Source organism: White spot syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2020-10-28
Authors: Somsoros, W., Sangawa, T., Takebe, K., Attarataya, J., Suzuki, M., Khunrae, P.
PDB entry 7ddb: Crystal structure of fungal antifreeze protein with intermediate activity
Classification: ANTIFREEZE PROTEIN
Source organism: Typhula ishikariensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2020-10-28
Authors: Khan, N.M.M.U., Arai, T., Tsuda, S., Kondo, H.
PDB entry 7ddc: Crystal structure of SARS-CoV-2 main protease in complex with Tafenoquine
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.175 Å
Deposited: 2020-10-28
Authors: Chen, Y., Wang, Y.C., Yang, C.S., Hung, M.C.
PDB entry 7ddd: SARS-Cov2 S protein at close state
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-10-28
Authors: Cong, Y., Liu, C.X.
PDB entry 7dde: Cryo-EM structure of the Ape4 and Nbr1 complex
Classification: HYDROLASE
Source organism: Escherichia coli (strain K12); Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2020-10-28
Authors: Zhang, J., Ye, K.
PDB entry 7ddf: Crystal structures of Na+,K+-ATPase in complex with beryllium fluoride
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 4.62 Å
Deposited: 2020-10-29
Authors: Ogawa, H., Cornelius, F., Kanai, R., Motoyama, K., Vilsen, B., Toyoshima, C.
PDB entry 7ddh: Crystal structures of Na+,K+-ATPase in complex with digoxin
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2020-10-29
Authors: Ogawa, H., Cornelius, F., Kanai, R., Motoyama, K., Vilsen, B., Toyoshima, C.
PDB entry 7ddi: Crystal structures of Na+,K+-ATPase in complex with digitoxin
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.72 Å
Deposited: 2020-10-29
Authors: Ogawa, H., Cornelius, F., Kanai, R., Motoyama, K., Vilsen, B., Toyoshima, C.
PDB entry 7ddk: Crystal structures of Na+,K+-ATPase in complex with rostafuroxin
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2020-10-29
Authors: Ogawa, H., Cornelius, F., Kanai, R., Motoyama, K., Vilsen, B., Toyoshima, C.
PDB entry 7ddl: Crystal structures of Na+,K+-ATPase in complex with bufalin
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2020-10-29
Authors: Ogawa, H., Cornelius, F., Kanai, R., Motoyama, K., Vilsen, B., Toyoshima, C.
PDB entry 7ddm: Crystal Structure of PenA39 beta-Lactamase
Classification: HYDROLASE
Source organism: Burkholderia multivorans CGD2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2020-10-29
Authors: Nukaga, M., Hoshino, T., Papp-Wallace, K.M.
PDB entry 7ddn: SARS-Cov2 S protein at open state
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2020-10-29
Authors: Cong, Y., Liu, C.X.
PDB entry 7ddo: Cryo-EM structure of human ACE2 and GD/1/2019 RBD
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Pangolin coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-10-29
Authors: Niu, S., Wang, J., Wang, H.W., Qi, J.X., Wang, Q.H., Gao, G.F.
PDB entry 7ddp: Cryo-EM structure of human ACE2 and GX/P2V/2017 RBD
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Pangolin coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-10-29
Authors: Niu, S., Wang, J., Wang, H.W., Qi, J.X., Wang, Q.H., Gao, G.F.
PDB entry 7ddq: Structure of RC-LH1-PufX from Rhodobacter veldkampii
Classification: PHOTOSYNTHESIS
Source organism: Rhodobacter veldkampii DSM 11550
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2020-10-29
Authors: Bracun, L., Yamagata, A., Shirouzu, M., Liu, L.N.
PDB entry 7ddr: Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)
Classification: OXYGEN STORAGE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-10-29
Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T.
PDB entry 7dds: Ancestral myoglobin aMbSp of Puijila Darwini relative
Classification: OXYGEN STORAGE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-29
Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T.
PDB entry 7ddt: Ancestral myoglobin aMbSe of Enaliarctos relative (imidazol ligand)
Classification: OXYGEN STORAGE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-10-29
Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T.
PDB entry 7ddu: Elephant seal myoglobin esMb
Classification: OXYGEN STORAGE
Source organism: Mirounga angustirostris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-10-29
Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T.
PDB entry 7ddv: Crystal structure of M.tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
Classification: LYASE/LYASE INHIBITOR
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-29
Authors: Tiwari, S., Pal, R.K., Biswal, B.K.
PDB entry 7ddw: Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase S126C
Classification: OXIDOREDUCTASE
Source organism: Staphylococcus equorum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2020-10-30
Authors: Retnoningrum, D.S., Yoshida, H., Razani, M.D., Meidianto, V.F., Hartanto, A., Artarini, A., Ismaya, W.T.
PDB entry 7ddx: Crystal structure of KANK1 S1179F mutant in complex wtih eIF4A1
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-10-30
Authors: Pan, W., Xu, Y., Wei, Z.
PDB entry 7ddy: Crystal structure of an acetyl xylan esterase AlAXEase
Classification: HYDROLASE
Source organism: Arcticibacterium luteifluviistationis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.505 Å
Deposited: 2020-10-30
Authors: Zhang, Y., Li, P.Y., Zhang, Y.Z.
PDB entry 7ddz: The Crystal Structure of Human Neuropeptide Y Y2 Receptor with JNJ-31020028
Classification: MEMBRANE PROTEIN
Source organism: Desulfovibrio vulgaris str. Hildenborough; Enterobacteria phage RB59; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-30
Authors: Tang, T., Han, S., Zhao, Q., Wu, B.
PDB entry 7de0: Crystal structure of FtmOx1 Y224F mutation
Classification: ALLERGEN
Source organism: Aspergillus fumigatus AF210
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-31
Authors: Wang, F., Gao, Y.Q., Gan, J.H., Cao, C.Y.
PDB entry 7de1: Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal RNA binding domain
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-01
Authors: Chen, S., Kang, S.
PDB entry 7de2: iron and alpha-ketoglutarate-dependent endoperoxidase NvfI
Classification: OXIDOREDUCTASE
Source organism: Aspergillus novofumigatus IBT 16806
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-11-01
Authors: Zhai, R., Mori, T., Abe, I.
PDB entry 7de3: Human adenylate kinase 1 (hAK1) mutant-R128W
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.197 Å
Deposited: 2020-11-01
Authors: Lin, W.
PDB entry 7de4: Hybrid cluster protein (HCP) from Escherichia coli
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.61 Å
Deposited: 2020-11-02
Authors: Fujishiro, T., Ooi, M., Takaoka, K., Takahashi, Y.
PDB entry 7de5: Crystal structure of yak lactoperoxidase at 1.55 A resolution.
Classification: OXIDOREDUCTASE
Source organism: Bos mutus grunniens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-11-02
Authors: Singh, P.K., Viswanathan, V., Sharma, P., Rani, C., Ahmad, N., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 7de7: Crystal structure of PDZD7 HHD domain
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2020-11-02
Authors: Wang, H., Lin, L., Lu, Q.
PDB entry 7de8: Crystal Structure of outer membrane protein PorB with G103K mutations from Neisseria meningitidis W135
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2020-11-02
Authors: Tanabe, M., Kattner, C.
PDB entry 7de9: crystal structure of Arabidopsis RDM15 tudor domain in complex with an H3K4me1 peptide
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.711 Å
Deposited: 2020-11-03
Authors: Song, Z., Du, J.
PDB entry 7dea: Structure of an avian influenza H5 hemagglutinin from the influenza virus A/duck Northern China/22/2017 (H5N6)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2020-11-03
Authors: Sun, H., Sun, H., Song, J., Zhang, W., Wei, X., Qi, J., Gao, G.F., Liu, J.
PDB entry 7deb: Structure of an avian influenza H5 hemagglutinin from the influenza virus A/duck/Eastern China/L0230/2010 (H5N2)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/duck/Eastern China/L0321/2010(H5N2))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-11-03
Authors: Sun, H., Sun, H., Song, J., Zhang, W., Qi, J., Gao, G.F., Liu, J.
PDB entry 7ded: Mevo lectin complex with mannoheptose (Man7)
Classification: SUGAR BINDING PROTEIN
Source organism: Methanococcus voltae (strain ATCC BAA-1334 / A3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.228 Å
Deposited: 2020-11-03
Authors: Sivaji, N., Surolia, A., Vijayan, M.
PDB entry 7dee: Structural Basis of the regulation of DISC Assembly by the interaction of c-FLIPs with Procaspase-8
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2020-11-03
Authors: Bai, Z.Q., Hu, K.F.
PDB entry 7deg: Cryo-EM structure of a heme-copper terminal oxidase dimer provides insights into its catalytic mechanism
Classification: OXIDOREDUCTASE
Source organism: Aquifex aeolicus; Aquifex aeolicus (strain VF5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-11-04
Authors: Fei, S., Hartmut, M., Yun, Z., Guoliang, Z., Shuangbo, Z.
PDB entry 7deh: Solution structure of cecropin P1 in dodecylphosphocholine micelles
Classification: ANTIMICROBIAL PROTEIN
Source organism: Ascaris suum
Experimental method: SOLUTION NMR
Deposited: 2020-11-04
Authors: Gu, H., Kumeta, H., Aizawa, T.
PDB entry 7dei: Structure of human ORP3 ORD domain in complex with PI(4)P
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-11-04
Authors: Tong, J., Tan, L., Im, Y.J.
PDB entry 7dej: Structure of human ORP3 ORD in apo-form
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-11-04
Authors: Tong, J., Tan, L., Im, Y.J.
PDB entry 7dek: Pseudomonas aeruginosa FK506-binding protein PaFkbA
Classification: ISOMERASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-11-04
Authors: Ynag, J., Huang, Q., Bao, R.
PDB entry 7del: Crystal structure of P.aeruginosa LpxC in complex with inhibitor
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-11-04
Authors: Mima, M., Ushiyama, F., Tanaka-Yamamoto, N.
PDB entry 7dem: Crystal structure of P.aeruginosa LpxC in complex with inhibitor
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-11-04
Authors: Mima, M., Ushiyama, F., Matsuda, Y.
PDB entry 7den: Crystal structure of P.aeruginosa LpxC in complex with inhibitor
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2020-11-04
Authors: Mima, M., Ushiyama, F., Takashima, H.
PDB entry 7deo: Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-11-04
Authors: Fu, D., Zhang, G., Li, X., Rao, Z., Guo, Y.
PDB entry 7dep: S. aureus SsbB with 5-FU
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus (strain ED98)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.094 Å
Deposited: 2020-11-04
Authors: Lin, E.S., Huang, Y.H., Huang, C.Y.
PDB entry 7deq: Lysozyme-sugar complex in D2O
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2020-11-04
Authors: Tanaka, I., Chatake, T.
PDB entry 7der: Lysozyme alone in H2O
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.03 Å
Deposited: 2020-11-04
Authors: Tanaka, I., Chatake, T.
PDB entry 7des: Acyl-Coenzyme A Binding Protein 103 (LMJF_17_0620) of Leishmania Major
Classification: LIPID BINDING PROTEIN
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-11-04
Authors: Verma, S., Sundd, M., Makde, R.D.
PDB entry 7det: Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-11-05
Authors: Wang, Y., Zhang, G., Li, X., Rao, Z., Guo, Y.
PDB entry 7deu: Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-11-05
Authors: Zhang, Z., Zhang, G., Li, X., Rao, Z., Guo, Y.
PDB entry 7dev: Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora
Classification: TRANSFERASE
Source organism: Gentiana triflora
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-11-05
Authors: Murayama, K., Kato-Murayama, M., Shirouzu, M.
PDB entry 7dex: Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase H174A mutant with caffeoyl-CoA
Classification: TRANSFERASE
Source organism: Gentiana triflora
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-11-05
Authors: Murayama, K., Kato-Murayama, M., Shirouzu, M.
PDB entry 7dey: Structure of Dicer from Pichia stipitis
Classification: SPLICING
Source organism: Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.897 Å
Deposited: 2020-11-05
Authors: Jobichen, C., Jingru, C.
PDB entry 7df1: Crystal structure of human CD98 heavy chain extracellular domain in complex with S1-F4 scFv
Classification: ANTITUMOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.806 Å
Deposited: 2020-11-06
Authors: Liu, X., Ding, J., Sui, J., Tian, X.
PDB entry 7df2: Crystal structure of a C2 domain protein from Ramazzottius varieornatus
Classification: METAL BINDING PROTEIN
Source organism: Ramazzottius varieornatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-11-06
Authors: Fukuda, Y., Inoue, T.
PDB entry 7df3: SARS-CoV-2 S trimer, S-closed
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2020-11-06
Authors: Cong, X., Yao, C.
PDB entry 7df4: SARS-CoV-2 S-ACE2 complex
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-11-06
Authors: Cong, X., Yao, C.
PDB entry 7df5: Human Galectin-3 CRD in complex with novel tetrahydropyran-based thiodisaccharide mimic inhibitor
Classification: CARBOHYDRATE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2020-11-06
Authors: Ghosh, K., Kumar, A.
PDB entry 7df6: Mouse Galectin-3 CRD in complex with novel tetrahydropyran-based thiodisaccharide mimic inhibitor
Classification: CARBOHYDRATE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-06
Authors: Ghosh, K., Kumar, A.
PDB entry 7df7: Crystal structure of human V-1 in the apo form
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-11-06
Authors: Takeda, S., Nagae, T.
PDB entry 7df8: full length hNPC1L1-Apo
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2020-11-06
Authors: Hu, M., Sun, S., Sui, S.
PDB entry 7df9: Crystal of Arrestin2-V2Rpp-1-Fab30 complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2020-11-06
Authors: Sun, J.P., Yu, X., Xiao, P., He, Q.T., Lin, J.Y., Zhu, Z.L.
PDB entry 7dfa: Crystal of Arrestin2-V2Rpp-4-Fab30 complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2020-11-06
Authors: Sun, J.P., Yu, X., Xiao, P., He, Q.T., Lin, J.Y., Zhu, Z.L.
PDB entry 7dfb: Crystal of Arrestin2-V2Rpp-6-7-Fab30 complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.28 Å
Deposited: 2020-11-06
Authors: Sun, J.P., Yu, X., Xiao, P., He, Q.T., Lin, J.Y., Zhu, Z.L.
PDB entry 7dfc: Crystal of Arrestin2-V2Rpp-3-Fab30 complex
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2020-11-06
Authors: Sun, J.P., Yu, X., Xiao, P., He, Q.T., Lin, J.Y., Zhu, Z.L.
PDB entry 7dfe: NMR structure of TuSp2-RP
Classification: PROTEIN FIBRIL
Source organism: Nephila antipodiana
Experimental method: SOLUTION NMR
Deposited: 2020-11-07
Authors: Lin, Z., Fan, T., Fan, J.
PDB entry 7dfg: Structure of COVID-19 RNA-dependent RNA polymerase bound to favipiravir
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2020-11-08
Authors: Li, Z., Zhou, Z., Yu, X.
PDB entry 7dfh: Structure of COVID-19 RNA-dependent RNA polymerase bound to ribavirin
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2020-11-08
Authors: Li, Z., Zhou, Z., Yu, X.
PDB entry 7dfj: Crystal structure of glucose isomerase by serial millisecond crystallography
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-11-08
Authors: Nam, K.H.
PDB entry 7dfk: Crystal structure of xylitol-bound glucose isomerase by serial millisecond crystallography
Classification: ISOMERASE
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-11-08
Authors: Nam, K.H.
PDB entry 7dfl: Cryo-EM structure of histamine H1 receptor Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-11-09
Authors: He, Y., Xia, R., Wang, N., Xu, Z.
PDB entry 7dfm: Crystal structure of glycoside hydrolase family 11 beta-xylanase from Streptomyces olivaceoviridis E-86
Classification: HYDROLASE
Source organism: Streptomyces olivaceoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-11-09
Authors: Fujimoto, Z., Kishine, N., Kaneko, S.
PDB entry 7dfn: Crystal structure of glycoside hydrolase family 11 beta-xylanase from Streptomyces olivaceoviridis E-86 in complex with alpha-L-arabinofuranosyl xylotetraose
Classification: HYDROLASE
Source organism: Streptomyces olivaceoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-09
Authors: Fujimoto, Z., Kishine, N., Kaneko, S.
PDB entry 7dfo: Crystal structure of glycoside hydrolase family 11 beta-xylanase from Streptomyces olivaceoviridis E-86 in complex with 4-O-methyl-alpha-D-glucuronopyranosyl xylotetraose
Classification: HYDROLASE
Source organism: Streptomyces olivaceoviridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-09
Authors: Fujimoto, Z., Kishine, N., Kaneko, S.
PDB entry 7dfp: Human dopamine D2 receptor in complex with spiperone
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-11-09
Authors: Im, D., Shimamura, T., Iwata, S.
PDB entry 7dfq: Crystal Structure of a novel 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase from Fusarium oxysporum 12S, ligand-free form
Classification: HYDROLASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2020-11-09
Authors: Kondo, T., Arakawa, T., Fushinobu, S., Sakamoto, T.
PDB entry 7dfr: CRYSTAL STRUCTURES OF ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE. THE NADP+ HOLOENZYME AND THE FOLATE(DOT)NADP+ TERNARY COMPLEX. SUBSTRATE BINDING AND A MODEL FOR THE TRANSITION STATE
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1988-10-21
Authors: Bystroff, C., Oatley, S.J., Kraut, J.
PDB entry 7dfs: Crystal structure of a novel 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase from Fusarium oxysporum 12S - Rha-GlcA complex
Classification: HYDROLASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2020-11-09
Authors: Kondo, T., Arakawa, T., Fushinobu, S., Sakamoto, T.
PDB entry 7dft: Crystal structure of Xanthomonas oryzae ClpP
Classification: HYDROLASE
Source organism: Xanthomonas oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-11-09
Authors: Yang, C.-G., Yang, T.
PDB entry 7dfu: Crystal structure of Xanthomonas oryzae ClpP S68Y in complex with ADEP4.
Classification: HYDROLASE
Source organism: Xanthomonas oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.901 Å
Deposited: 2020-11-09
Authors: Yang, C.-G., Yang, T.
PDB entry 7dfv: Cryo-EM structure of plant NLR RPP1 tetramer core part
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2020-11-10
Authors: Ma, S.C., Lapin, D., Liu, L., Sun, Y., Song, W., Zhang, X.X., Logemann, E., Yu, D.L., Wang, J., Jirschitzka, J., Han, Z.F., SchulzeLefert, P., Parker, J.E., Chai, J.J.
PDB entry 7dfw: Cryo_EM structure of delta N-NPC1L1-CLR
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2020-11-10
Authors: Hu, M., Sun, S.
PDB entry 7dfx: Structure and function of Diadenylate cyclase DacM in Mycoplasma ovipneumoniae
Classification: IMMUNE SYSTEM
Source organism: Mycoplasma ovipneumoniae 14811
Experimental method: X-RAY DIFFRACTION
Resolution: 2.996 Å
Deposited: 2020-11-10
Authors: Fan, S., Li, M.
PDB entry 7dfy: Novel motif for left-handed G-quadruplex formation
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2020-11-10
Authors: Das, P., Winnerdy, F.R., Maity, A., Mechulam, Y., Phan, A.T.
PDB entry 7dfz: Cryo_EM structure of delta N-NPC1L1-EZE
Classification: STRUCTURAL PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2020-11-10
Authors: Hu, M., Sun, S.
PDB entry 7dg0: Structure and function of Diadenylate cyclase DacM in Mycoplasma ovipneumoniae
Classification: IMMUNE SYSTEM
Source organism: Mycoplasma ovipneumoniae 14811
Experimental method: X-RAY DIFFRACTION
Resolution: 1.895 Å
Deposited: 2020-11-10
Authors: Fan, S.L.
PDB entry 7dg2: Nse1-Nse3-Nse4 complex
Classification: DNA BINDING PROTEIN
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-11-10
Authors: Cho, Y., Jo, A.
PDB entry 7dg4: The co-crystal structure of DYRK2 with a small molecule inhibitor 6
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2020-11-10
Authors: Wei, T., Xiao, J.
PDB entry 7dg5: Crystal structure of mouse Smc1-Smc3 hinge domain containing a D574Y mutation
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-11-11
Authors: Seo, H., Noh, H., Oh, B.-H.
PDB entry 7dg6: Structure of SARS-Cov2-Mpro-1-302
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-11-11
Authors: Fu, Z., Liu, M., Huang, H.
PDB entry 7dg7: DPBB domain of VCP-like ATPase from Methanopyrus kandleri
Classification: CHAPERONE
Source organism: Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.604 Å
Deposited: 2020-11-11
Authors: Yagi, S., Tagami, S.
PDB entry 7dg9: DPBB domain of VCP-like ATPase from Aeropyrum pernix
Classification: CHAPERONE
Source organism: Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.602 Å
Deposited: 2020-11-11
Authors: Yagi, S., Tagami, S.
PDB entry 7dgb: The co-crystal structure of SARS-CoV-2 main protease with (S)-2-cinnamamido-4-methyl-N-((S)-1-oxo-3-((S)-2-oxopyrrolidin-3-yl)propan-2-yl)pentanamide
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.678 Å
Deposited: 2020-11-11
Authors: Shang, L.Q., Wang, H.
PDB entry 7dgc: The structure of the Arabidopsis thaliana guanosine deaminase in reaction with 2'-O-Methylguanosine
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-11-11
Authors: Xie, W., Jia, Q., Zeng, H.
PDB entry 7dgd: apo state of class C GPCR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2020-11-11
Authors: Zhang, J.Y., Wu, L.J., Luo, F., Hua, T., Liu, Z.J.
PDB entry 7dge: intermediate state of class C GPCR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2020-11-11
Authors: Zhang, J.Y., Wu, L.J., Luo, F., Hua, T., Liu, Z.J.
PDB entry 7dgf: The co-crystal structure of SARS-CoV-2 main protease with peptidomimetic inhibitor (S)-2-cinnamamido-N-((S)-1-oxo-3-((S)-2-oxopiperidin-3-yl)propan-2-yl)hexanamide
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.639 Å
Deposited: 2020-11-11
Authors: Shang, L.Q., Wang, H.
PDB entry 7dgg: The co-crystal structure of SARS-CoV-2 main protease with (S)-2-cinnamamido-N-((S)-1-oxo-3-((S)-2-oxopyrrolidin-3-yl)propan-2-yl)hexanamide
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.004 Å
Deposited: 2020-11-11
Authors: Shang, L.Q., Wang, H.
PDB entry 7dgh: The co-crystal structure of SARS-CoV-2 main protease with peptidomimetic inhibitor N-((S)-3-methyl-1-(((S)-4-methyl-1-oxo-1-(((S)-1-oxo-3-((S)-2-oxopiperidin-3-yl)propan-2-yl)amino)pentan-2-yl)amino)-1-oxobutan-2-yl)-2-naphthamide
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.968 Å
Deposited: 2020-11-11
Authors: Shang, L.Q., Wang, H.
PDB entry 7dgi: The co-crystal structure of SARS-CoV-2 main protease with peptidomimetic inhibitor N-((S)-3-methyl-1-(((S)-4-methyl-1-oxo-1-(((S)-1-oxo-3-((S)-2-oxopiperidin-3-yl)propan-2-yl)amino)pentan-2-yl)amino)-1-oxobutan-2-yl)-4-nitrobenzamide
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.898 Å
Deposited: 2020-11-11
Authors: Shang, L.Q., Wang, H.
PDB entry 7dgj: The dimeric structure of K78H/G80A/H82A myoglobin
Classification: OXYGEN BINDING
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-11-12
Authors: Nagao, S., Idomoto, A., Shibata, N., Higuchi, Y., Hirota, S.
PDB entry 7dgk: The Co-bound dimeric structure of K78H/G80A/H82A myoglobin
Classification: OXYGEN BINDING
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-11-12
Authors: Nagao, S., Idomoto, A., Shibata, N., Higuchi, Y., Hirota, S.