LiteFold/PDB huggingface dataset:
PDB entry 9ojm: Human mitochondrial 28S PIC with tRNA and mtIF2
Classification: RIBOSOME
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-05-08
Authors: Kober, D.L., Wang, J.
PDB entry 9ojn: Structure of Mycobacterium smegmatis EtfD
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-05-08
Authors: Courbon, G.M., Rubinstein, J.L.
PDB entry 9ojo: Crystal structure of TNF alpha in complex with compound 1
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.358 Å
Deposited: 2025-05-08
Authors: Judge, R.A., Bian, Z., Longenecker, K.L.
PDB entry 9ojp: Crystal structure of E. coli ApaH bound to Manganese ions
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-05-08
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ojq: Crystal structure of E. coli ApaH in complex with ADP, active state
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-05-08
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ojr: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 3
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-05-08
Authors: White, K.I., Brunger, A.T.
PDB entry 9ojs: Crystal structure of TNF alpha in complex with compound 4
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.849 Å
Deposited: 2025-05-08
Authors: Judge, R.A., Longenecker, K.L.
PDB entry 9ojt: Co-Structure of Main Protease of SARS-CoV-2 with Compound 10
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2025-05-08
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9oju: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 4
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-05-08
Authors: White, K.I., Brunger, A.T.
PDB entry 9ojv: Crystal structure of monoclonal J2 antibody bound to dsRNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-05-08
Authors: Bou-Nader, C., Zhang, J.
PDB entry 9ojw: Crystal structure of E. coli ApaH in complex with ADP, inactive state
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-05-08
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ojx: Crystal structure of E. coli ApaH in complex with GDP
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-05-08
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ojy: Crystal structure of TNF alpha in complex with compound 3.
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.158 Å
Deposited: 2025-05-08
Authors: Judge, R.A., Longenecker, K.L., Bian, Z.
PDB entry 9ojz: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 5
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2025-05-08
Authors: White, K.I., Brunger, A.T.
PDB entry 9ok1: Crystal structure of E. coli ApaH in complex with CDP
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-05-08
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ok2: Crystal structure of E. coli ApaH in complex with UDP
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-05-08
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ok3: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), 3:2:1 alphaSNAP-syntaxin-1a-SNAP-25 subcomplex local refinement, non-hydrolyzing, class 13
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2025-05-08
Authors: White, K.I., Brunger, A.T.
PDB entry 9ok4: GID4 in complex with CLEO4-88 and ACAA1
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-05-09
Authors: Chana, C.K., Sicheri, F.
PDB entry 9ok5: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 16
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-05-09
Authors: White, K.I., Brunger, A.T.
PDB entry 9ok6: Crystal structure of TNF alpha in complex with compound 19
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.776 Å
Deposited: 2025-05-09
Authors: Judge, R.A., Longenecker, K.L., Bian, Z.
PDB entry 9ok9: Crystal structure of an MKP5 allosteric loop mutant, P447V, in complex with an allosteric inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-05-09
Authors: Manjula, R., Bennett, A.M., Lolis, E.
PDB entry 9oka: Cardiac lambda-6 light chain amyloid AL-224L single protofilament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-05-09
Authors: Hicks, C.W., Gursky, O., Huda, N.
PDB entry 9okc: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 17
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2025-05-09
Authors: White, K.I., Brunger, A.T.
PDB entry 9okf: Cryo-EM structure of human SV2A in the apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-05-09
Authors: Pidathala, S., Dai, Y., Lee, C.H.
PDB entry 9okg: Cryo-EM structure of human SV2A in complex with levetiracetam
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-05-09
Authors: Pidathala, S., Dai, Y., Lee, C.H.
PDB entry 9okh: Cryo-EM structure of human SV2A in complex with UCBJ
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2025-05-09
Authors: Pidathala, S., Dai, Y., Lee, C.H.
PDB entry 9oki: Cryo-EM structure of human SV2A in complex with UCBJ and UCB1244283
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-05-09
Authors: Pidathala, S., Dai, Y., Lee, C.H.
PDB entry 9okj: Cryo-EM structure of human SV2A in complex with padsevonil
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-05-09
Authors: Pidathala, S., Dai, Y., Lee, C.H.
PDB entry 9oks: 16mer self-complementary duplex RNA with dA:U pair sequence 1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9okt: 16mer self-complementary duplex RNA with dA:U pair sequence 2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9oku: 16mer self-complementary duplex RNA with dA:s(2)U pair sequence 1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.479 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9okv: 16mer self-complementary duplex RNA with dA:s(2)U pair sequence 2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.233 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9okw: 16mer self-complementary duplex RNA with dG:C pair sequence 1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9okx: 16mer self-complementary duplex RNA with dG:C pair sequence 2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.375 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9oky: 16mer self-complementary duplex RNA with dG:s(2)C pair sequence 1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.478 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9okz: 16mer self-complementary duplex RNA with dG:s(2)C pair sequence 2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.919 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9ol0: 16mer self-complementary duplex RNA with dI:s(2)C pair sequence 1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9ol1: 16mer self-complementary duplex RNA with dI:s(2)C pair sequence 2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.243 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9ol2: RNA-imidazolium-bridged dinucleotide intermediate complex
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.528 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9ol3: DNA-imidazolium-bridged dinucleotide intermediate complex
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.557 Å
Deposited: 2025-05-11
Authors: Fang, Z., Szostak, J.W.
PDB entry 9ol4: Cryo-EM Structure of Ryanodine Receptor 1: Drug Bound Open Conformation
Classification: TRANSPORT PROTEIN/Isomerase
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-05-12
Authors: Molinarolo, S.M., Van Petegem, F.
PDB entry 9ol5: Rabbit Ryanodine Receptor 1: Atorvastatin Bound Closed Conformation
Classification: TRANSPORT PROTEIN/Isomerase
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2025-05-12
Authors: Molinarolo, S.M., Van Petegem, F.
PDB entry 9ol6: Rabbit Ryanodine Receptor 1: DMSO Control Closed Conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-05-12
Authors: Molinarolo, S.M., Van Petegem, F.
PDB entry 9ol7: Backbone-modified parallel beta hairpin (PBH): wild-type
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-05-12
Authors: Starnes, S.K., Horne, W.S., Del Valle, J.R.
PDB entry 9ol8: Backbone-modified parallel beta hairpin (PBH): N-alpha-amino Arginine at position 17
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-05-12
Authors: Starnes, S.K., Horne, W.S., Del Valle, J.R.
PDB entry 9ol9: Backbone-modified parallel beta hairpin (PBH): N-alpha-amino Phenylalanine at position 4
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-05-12
Authors: Starnes, S.K., Horne, W.S., Del Valle, J.R.
PDB entry 9ola: Backbone-modified parallel beta hairpin (PBH): N-alpha-amino Tyrosine at position 15
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-05-12
Authors: Starnes, S.K., Horne, W.S., Del Valle, J.R.
PDB entry 9olb: Identification of ligands for E3 ligases using fragment-based methods
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2025-05-12
Authors: Phan, J., Fesik, S.W.
PDB entry 9olc: Crystal structure of PPARg ligand-binding domain in complex with NCoR1 peptide and FTX-6746
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2025-05-12
Authors: Setser, J.W., DeLaBarre, B.
PDB entry 9old: Crystal structure of alpha-NPG-bound D59C MelBSt
Classification: MEMBRANE PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-05-12
Authors: Guan, L., Hariharan, P.
PDB entry 9ole: Crystal Structure of PI5P4KIIAlpha complex with 066ATZ
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.404 Å
Deposited: 2025-05-12
Authors: He, Z., Ha, Y.
PDB entry 9olf: Membrane-associated human mitoribosome in complex with TACO1
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2025-05-12
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9olh: Symmetry-expanded reconstruction of augmin T-II bonsai on the GTPgammaS microtubule
Classification: CELL CYCLE
Source organism: Bos taurus; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-05-12
Authors: Travis, S.M., Zhang, R.
PDB entry 9oli: Crystal structure of the melibiose-bound melibiose transporter
Classification: MEMBRANE PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2025-05-12
Authors: Guan, L., Hariharan, P.
PDB entry 9olj: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 18
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2025-05-12
Authors: White, K.I., Brunger, A.T.
PDB entry 9olk: Structure of wild-type human TRPC3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-05-12
Authors: Bell, B., Baker, M.L., Cordero-Morales, J.F.
PDB entry 9oll: Structure of human TRPC3 T573A mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-05-12
Authors: Bell, B., Baker, M.L., Cordero-Morales, J.F.
PDB entry 9olm: Structure of human TRPC3 cerebellar splice variant (isoform c)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-05-12
Authors: Bell, B., Baker, M.L., Cordero-Morales, J.F.
PDB entry 9oln: Crystal structure of E. coli ApaH in complex with NAD+
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-05-12
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9olo: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 19
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2025-05-12
Authors: White, K.I., Brunger, A.T.
PDB entry 9olp: Crystal structure of a raffinose-bound D59C MelB
Classification: MEMBRANE PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. 101966
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2025-05-12
Authors: Guan, L., Hariharan, P.
PDB entry 9olq: Designed allosteric facilitated dissociation switch AS1_K46L_E50W_K172W_E173Y in complex state THE
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.48 Å
Deposited: 2025-05-12
Authors: Bera, A.K., Broerman, A., Baker, D.
PDB entry 9olr: Crystal structure of D59C MelB st bound with alpha-methyl galactoside (aMG)
Classification: MEMBRANE PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.68 Å
Deposited: 2025-05-12
Authors: Guan, L., Hariharan, P.
PDB entry 9olt: GII.27: Loreto0959 norovirus protruding domain complexed with A-trisaccharide
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2025-05-13
Authors: Holroyd, D.L., Bruning, J.B., Hansman, G.S.
PDB entry 9olu: GX/NPIH26 bat norovirus protruding domain in complex with L-fucose
Classification: VIRAL PROTEIN
Source organism: Bat norovirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-05-13
Authors: Holroyd, D.L., Bruning, J.B., Hansman, G.S.
PDB entry 9olx: Structure of a constitutively open human TRPC3 mutant in the inhibited state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-13
Authors: Bell, B., Baker, M.L., Cordero-Morales, J.F.
PDB entry 9oly: Crystal structure of E. coli ApaH D37A mutant, apo form
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2025-05-13
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9olz: Crystal structure of E. coli ApaH in complex with Ap4A
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2025-05-13
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9om0: The pre-desensitized state structure of human P2X2 receptor channel in lipid nanodiscs with free ATP and sodium
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-05-13
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9om4: Cryo-EM structure of filament form Acidithiobacillus caldus (Aca) short prokaryotic argonautes, HNH-associated (SPARHA) with gRNA and tDNA
Classification: IMMUNE SYSTEM/DNA/RNA
Source organism: Acidithiobacillus caldus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-05-13
Authors: Murakami, K.S., Narwal, M.
PDB entry 9om6: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), 4:2:2 alphaSNAP-syntaxin-1a-SNAP-25 subcomplex local refinement, hydrolyzing, class 23
Classification: HYDROLASE
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2025-05-13
Authors: White, K.I., Brunger, A.T.
PDB entry 9om7: BtCap14 SAVED domain + 2',3'-cGAMP
Classification: ANTIVIRAL PROTEIN
Source organism: Bacillus thuringiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-13
Authors: Tak, U., Hartwick, E.W., Whiteley, A.T.
PDB entry 9om8: Crystal structure of PprA S-F filament from Deinococcus radiodurans
Classification: DNA BINDING PROTEIN
Source organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2025-05-13
Authors: Szabla, R., Junop, M.S., Wood, K.
PDB entry 9om9: Crystal structure of E. coli ApaH in complex with AppCH2ppA
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-05-13
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9oma: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2025-05-13
Authors: Pang, E.Z., Zhao, B., Flowers, C., Oroudjeva, E., Winters, J.B., Pandey, V., Sawaya, M.R., Wohlschlegel, W., Loo, J.A., Rodriguez, J.A., Clarke, S.G.
PDB entry 9omc: Crystal structure of E. coli ApaH in complex with Gp4G
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-05-13
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9omd: Crystal structure of Protease IV in complex with its propeptide
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2025-05-13
Authors: Neupane, T., Daboor, S., Cheng, Z., Langelaan, D.N.
PDB entry 9ome: CryoEM structure of FPM13
Classification: METAL BINDING PROTEIN
Source organism: Francisella
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-05-13
Authors: Liu, X., Zhou, Z.H., Clemens, D.L., Lee, B.Y., Horwitz, M.A.
PDB entry 9omf: Cryo-EM structure of neddylated PCMTD1-ELOBC-CUL5-RBX2 (N8-CRL5-PCMTD1)
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.72 Å
Deposited: 2025-05-13
Authors: Pang, E.Z., Zhao, B., Flowers, C., Oroudjeva, E., Winters, J.B., Pandey, V., Sawaya, M.R., Wohlschlegel, W., Loo, J.A., Rodriguez, J.A., Clarke, S.G.
PDB entry 9omg: Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-05-13
Authors: Roark, R.S., Shapiro, L., Kwong, P.D.
PDB entry 9omh: WrtF fucosyltransferase - Apo
Classification: TRANSFERASE
Source organism: Rhizobium tropici CIAT 899
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-05-14
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9omi: WrtF fucosyltransferase - GDP
Classification: TRANSFERASE
Source organism: Rhizobium tropici CIAT 899
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-05-14
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9omj: WrtF fucosyltransferase - GDP-beta-L-fucose
Classification: TRANSFERASE
Source organism: Rhizobium tropici CIAT 899
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-05-14
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9omk: WrtF fucosyltransferase - trisaccharide acceptor
Classification: TRANSFERASE
Source organism: Rhizobium tropici CIAT 899
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-05-14
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9oml: WrtF fucosyltransferase - acetylated trisaccharide acceptor
Classification: TRANSFERASE
Source organism: Rhizobium tropici CIAT 899
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-05-14
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9omm: WrtF fucosyltransferase - tetrasaccharide product
Classification: TRANSFERASE
Source organism: Rhizobium tropici CIAT 899
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-05-14
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9omn: WrtF fucosyltransferase - GDP-2-deoxy-2-fluoro-beta-L-fucose
Classification: TRANSFERASE
Source organism: Rhizobium tropici CIAT 899
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-05-14
Authors: Forrester, T.J.B., Kimber, M.S.
PDB entry 9omo: mGluR7 in native membrane vesicles
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-05-14
Authors: Mandala, V., Fu, Z., MacKinnon, R.
PDB entry 9omp: mGluR7 in native membrane vesicles
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-05-14
Authors: Mandala, V., Fu, Z., MacKinnon, R.
PDB entry 9omq: NSF, substrate free, hydrolyzing, class 24
Classification: HYDROLASE
Source organism: Cricetulus griseus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2025-05-14
Authors: White, K.I., Brunger, A.T.
PDB entry 9omr: The desensitized state structure of human P2X2 receptor channel in lipid nanodiscs with free ATP and sodium
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-05-14
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9oms: X-ray structure of human acetylcholinesterase (hAChE) in complex with bis-oxime reactivator LG-1922
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-05-14
Authors: Kovalevsky, A., Radic, Z., Gerlits, O.
PDB entry 9omt: X-ray structure of paraoxon (POX)-inhibited human acetylcholinesterase (hAChE) in complex with bis-oxime reactivator LG-1922
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.704 Å
Deposited: 2025-05-14
Authors: Kovalevsky, A., Radic, Z., Gerlits, O.
PDB entry 9omu: Crystal structure of E. coli ApaH in complex with Ap4G
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-05-14
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9omv: Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state
Classification: TRANSLOCASE/INHIBITOR
Source organism: Cryptococcus neoformans var. grubii H99
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-05-14
Authors: Duan, H.D., Li, H.
PDB entry 9omw: Crystal structure of E. coli ApaH in complex with Ap4U
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-05-14
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9omx: Crystal structure of E. coli ApaH in complex with Up4U
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-05-14
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9omy: Cryo-EM structure of an octameric RAD51-XRCC3-RAD51C (RAD51-X3C) complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-05-14
Authors: Jia, L., Ruben, E.A., Olsen, S.K., Wasmuth, E.V., Rawal, Y., Kwon, Y., Sung, P.
PDB entry 9omz: Cryo-EM structure of a pentameric RAD51-XRCC3-RAD51C-RAD51D-XRCC2 (51-X3CDX2) complex.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-05-14
Authors: Ruben, E.A., Jia, L., Olsen, S.K., Wasmuth, E.V., Rawal, Y., Kwon, Y., Sung, P.
PDB entry 9on0: Crystal structure of E. coli ApaH D37A mutant in complex with Ap4U
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-05-14
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9on2: Cryo-EM structure of a tetrameric XRCC3-RAD51C-RAD51D-XRCC2 complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-05-14
Authors: Ruben, E.A., Jia, L., Olsen, S.K., Wasmuth, E.V., Rawal, Y., Kwon, Y., Sung, P.
PDB entry 9on4: Crystal structure of Zn2+ bound Calprotectin variant I73K
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-05-14
Authors: Garcia, V., Chazin, W.C.
PDB entry 9on5: The pre-open state 1 structure of human P2X2 receptor channel in lipid nanodiscs with free ATP and sodium
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-05-14
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9on6: The pre-open state 2 structure of human P2X2 receptor channel in lipid nanodiscs with free ATP and sodium
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-05-14
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9on7: Crystal structure of E. coli ApaH in complex with ppAG
Classification: HYDROLASE
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-05-14
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9on8: Immature HIV-1 CACTD-SP1 lattice with Maturation inhibitor PF-46396 (R) and Inositol hexakisphosphate (IP6)
Classification: PROTEIN BINDING
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: SOLID-STATE NMR
Deposited: 2025-05-14
Authors: Zadorozhnyi, R., Quinn, C.M., Zadrozny, K.K., Ablan, S.D., Kennedy, B.J., Yap, G.P.A., Sanner, D., Kraml, C., Freed, E.O., Ganser-Pornillos, B.K., Pornillos, O., Gronenborn, A.M., Polenova, T.
PDB entry 9on9: Immature HIV-1 CACTD-SP1 lattice with Maturation inhibitor PF-46396 (R) and Inositol hexakisphosphate (IP6)
Classification: PROTEIN BINDING
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: SOLID-STATE NMR
Deposited: 2025-05-14
Authors: Zadorozhnyi, R., Quinn, C.M., Zadrozny, K.K., Ablan, S.D., Kennedy, B.J., Yap, G.P.A., Sanner, D., Kraml, C., Freed, E.O., Ganser-Pornillos, B.K., Pornillos, O., Gronenborn, A.M., Polenova, T.
PDB entry 9ona: Immature HIV-1 CACTD-SP1 lattice with Maturation inhibitor PF-46396 (S) and Inositol hexakisphosphate (IP6)
Classification: PROTEIN BINDING
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: SOLID-STATE NMR
Deposited: 2025-05-14
Authors: Zadorozhnyi, R., Quinn, C.M., Zadrozny, K.K., Ablan, S.D., Kennedy, B.J., Yap, G.P.A., Sanner, D., Kraml, C., Freed, E.O., Ganser-Pornillos, B.K., Pornillos, O., Gronenborn, A.M., Polenova, T.
PDB entry 9onb: Immature HIV-1 CACTD-SP1 lattice with Maturation inhibitor PF-46396 (S) and Inositol hexakisphosphate (IP6)
Classification: PROTEIN BINDING
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: SOLID-STATE NMR
Deposited: 2025-05-14
Authors: Zadorozhnyi, R., Quinn, C.M., Zadrozny, K.K., Ablan, S.D., Kennedy, B.J., Yap, G.P.A., Sanner, D., Kraml, C., Freed, E.O., Ganser-Pornillos, B.K., Pornillos, O., Gronenborn, A.M., Polenova, T.
PDB entry 9ond: Crystal structure of E. coli ApaH in complex with ppAGG
Classification: HYDROLASE
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-05-15
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ong: Crystal structure of E. coli ApaH in complex with Ap4AG
Classification: HYDROLASE
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-05-15
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9onh: Structure of ancestral-reconstructed cytochrome P450 11A1 (CYP11A1) in complex with desmosterol
Classification: OXIDOREDUCTASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-05-15
Authors: Alves Chagas, B.C., Brixius-Anderko, S.
PDB entry 9oni: Crystal structure of dihydrofolate reductase (DHFR) from the filarial nematode W. bancrofti in complex with NADPH and methotrexate (MTX)
Classification: OXIDOREDUCTASE
Source organism: Wuchereria bancrofti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2025-05-15
Authors: Frey, K.M., Kwarteng, S., Goodey, N.M.
PDB entry 9onj: L-cluster free apo-NifEN expressed in E. coli
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2025-05-15
Authors: Neumann, B., Brandon, K., Suder, D.S., Hu, Y., Ribbe, M.W., Gonen, S.
PDB entry 9onk: L-cluster inward bound holo-NifEN expressed in E. coli
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2025-05-15
Authors: Neumann, B., Brandon, K., Suder, D.S., Hu, Y., Ribbe, M.W., Gonen, S.
PDB entry 9onm: near-apo rubrerythrin
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-05-15
Authors: Budziszewski, G.R., Snell, M.E., Monteiro, D.C.F., Lynch, M.L., Bowman, S.E.J.
PDB entry 9onn: Co-bound B. pseudomallei Rubrerythrin
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2025-05-15
Authors: Budziszewski, G.R., Snell, M.E., Monteiro, D.C.F., Lynch, M.L., Bowman, S.E.J.
PDB entry 9ono: Fe-bound B. pseudomallei rubrerythrin
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-05-15
Authors: Budziszewski, G.R., Snell, M.E., Monteiro, D.C.F., Lynch, M.L., Bowman, S.E.J.
PDB entry 9onq: Mn-bound B. pseudomallei rubrerythrin
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2025-05-15
Authors: Budziszewski, G.R., Snell, M.E., Monteiro, D.C.F., Lynch, M.L., Bowman, S.E.J.
PDB entry 9onr: rubrerythrin- E53A E124A
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2025-05-15
Authors: Budziszewski, G.R., Snell, M.E., Monteiro, D.C.F., Lynch, M.L., Bowman, S.E.J.
PDB entry 9onz: Influenza A Virus Group 2 Hemagglutinin (H7, Strain SH13) in Complex with the Potent Small-Molecule Entry Inhibitor SA-67
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-05-15
Authors: Xu, Y., Xu, K.
PDB entry 9oo0: Mycobacterium tuberculosis PurB
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-05-15
Authors: Jaganathan, D., Chen, K., Li, Z., Li, H.
PDB entry 9oo1: Influenza A Virus Group 2 Hemagglutinin (H7, Strain SH13) in Complex with a Potent Small-Molecule Entry Inhibitor ING-16-36
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-05-15
Authors: Xu, Y., Xu, K.
PDB entry 9oo6: Human PORCN bound to inhibitor C59
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2025-05-15
Authors: Black, K.A., Venugopal, H., Glukhova, A.
PDB entry 9oo7: Human PORCN bound to inhibitor ETC159
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-05-15
Authors: Black, K.A., Venugopal, H., Glukhova, A.
PDB entry 9oo8: Apo Human PORCN
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-05-15
Authors: Black, K.A., Venugopal, H., Glukhova, A.
PDB entry 9oo9: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 6
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9ooa: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 7
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.389 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9oob: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 8
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9ooc: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 10a
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9ood: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 10c
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9ooe: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 10d
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9oof: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 10e
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.681 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9oog: Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-05-15
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9ooh: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 10b
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9ooi: Crystal structure of dihydrofolate reductase (DHFR) from the filarial nematode W. bancrofti in complex with NADPH and antifolate 2-({4-[(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)benzoic acid (OG7 or TSD001)
Classification: OXIDOREDUCTASE
Source organism: Wuchereria bancrofti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2025-05-15
Authors: Frey, K.M., Goodey, N.M., Kwarteng, S.
PDB entry 9ooj: Crystal structure of MYST acetyltransferase domain in complex with inhibitor 18c
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-05-15
Authors: Hermans, S.J., Suwandi, A., Parker, M.W., Baell, J.B.
PDB entry 9ook: Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-05-15
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9oom: Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus type 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-05-16
Authors: Roark, R.S., Shapiro, L.S., Kwong, P.D.
PDB entry 9oon: Crystal structure of E. coli ApaH in complex with Ap4GU
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-05-16
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ooo: Human delta 2 receptor with R710W Cerebellar Ataxia mutation in the apo closed state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2025-05-16
Authors: Wang, H., Ahmed, F., Khau, J., Mondal, A.K., Twomey, E.C.
PDB entry 9oop: Human delta 2 receptor with R710W Cerebellar Ataxia mutation in the apo leak state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2025-05-16
Authors: Wang, H., Ahmed, F., Khau, J., Mondal, A.K., Twomey, E.C.
PDB entry 9ooq: Closed state of Gly/Glu/24S-HC bound hGluN1a-2B NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-05-16
Authors: Hyunook, K., Hiro, F.
PDB entry 9oor: Open state Gly/Glu/24S-HC bound hGluN1a-2B NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-05-16
Authors: Hyunook, K., Hiro, F.
PDB entry 9oos: Non-active state of Gly/Glu/Pregnenolone Sulfate bound hGluN1a-2B NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-05-16
Authors: Hyunook, K., Hiro, F.
PDB entry 9oot: Pre-active state of Gly/Glu/Pregnenolone Sulfate bound hGluN1a-2B NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-05-16
Authors: Hyunook, K., Hiro, F.
PDB entry 9oou: Glycine/Glutamate/EU 1622-240 rGluN1a-2B NMDAR
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-05-16
Authors: Steigerwald, R., Furukawa, H.
PDB entry 9oox: Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T6; Escherichia phage HK446
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-16
Authors: Patel, P.H., Maxwell, K.L., Norris, M.J.
PDB entry 9ooy: Crystal structure of E. coli ApaH in complex with Gp4AU
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-05-16
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ooz: Crystal structure of PqqT Y161W Variant with PQQ bound
Classification: TRANSPORT PROTEIN
Source organism: Methylorubrum extorquens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-05-16
Authors: Bruchs, A.T., Thompson, P.J., Nava-Matadamas, C., Mohd, T., Olshansky, L., Bridwell-Rabb, J.
PDB entry 9op0: Mycobacterium tuberculosis adenylosuccinate lyase
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2025-05-16
Authors: Chen, K., Singh, V., Li, Z., Li, H.
PDB entry 9op1: Cryo-EM structure of Candida albicans fluoride channel FEX in complex with Fab fragment
Classification: MEMBRANE PROTEIN
Source organism: Candida albicans SC5314; HIV-1 M:B_MN; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2025-05-16
Authors: Kang, C.-Y., An, M.J., Ohi, M.D., Stockbridge, R.B.
PDB entry 9op2: Crystal structure of E. coli ApaH in complex with Ap4GUAA
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-05-16
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9op3: Structure of Human ADAR2-R2D complexed with dsRNA containing 8-azaN and 2'-Deoxy-2'-fluorouridine
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-05-16
Authors: Campbell, K.B., Ouye, R.B., Wong, B.L., Jiang, A., Okada, K., McKenney, R.J., Fisher, A.J., Beal, P.A.
PDB entry 9op4: Herpes simplex virus type 1 (HSV-1) A-capsid pUL6 portal protein, dodecameric complex
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain KOS
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-05-16
Authors: Crofut, E.H., Kashyap, S., Stevens, A., Jih, J., Liu, Y.-T., Zhou, Z.H.
PDB entry 9op5: Herpes simplex virus type 1 (HSV-1) B-capsid pUL6 portal protein, dodecameric complex
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain KOS
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-05-16
Authors: Crofut, E.H., Kashyap, S., Stevens, A., Jih, J., Liu, Y.-T., Zhou, Z.H.
PDB entry 9op8: Herpes simplex virus type 1 (HSV-1) D-capsid pUL6 portal protein, dodecameric complex
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain KOS
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-05-17
Authors: Crofut, E.H., Kashyap, S., Stevens, A., Jih, J., Liu, Y.-T., Zhou, Z.H.
PDB entry 9opb: Herpes simplex virus type 1 (HSV-1) D-capsid pUL6 portal protein turrets, decamer
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain KOS
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-05-17
Authors: Crofut, E.H., Kashyap, S., Stevens, A., Jih, J., Liu, Y.-T., Zhou, Z.H.
PDB entry 9opc: Herpes simplex virus type 1 (HSV-1) C-capsid pUL6 portal protein, dodecameric complex
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain KOS
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-05-18
Authors: Crofut, E.H., Kashyap, S., Stevens, A., Jih, J., Liu, Y.-T., Zhou, Z.H.
PDB entry 9opg: Crystal structure of E. coli ApaH in complex with Ap4UG
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-05-19
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9oph: Crystal structure of E. coli ApaH in complex with Up4AG
Classification: HYDROLASE
Source organism: Escherichia coli K-12; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-05-19
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9opm: Crystal Structure of SARS-CoV-2 Mpro S147A in complex with Pfizer Intravenous Inhibitor PF-00835231
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-05-19
Authors: Zvornicanin, S.N., Shaqra, A.M., Schiffer, C.A.
PDB entry 9opn: Crystal Structure of SARS-CoV-2 Mpro S147N in complex with Pfizer Intravenous Inhibitor PF-00835231
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-05-19
Authors: Zvornicanin, S.N., Shaqra, A.M., Schiffer, C.A.
PDB entry 9ops: Structural Insights into Monoterpene Cyclisation of Limonene Synthase from Cannabis sativa
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-05-20
Authors: Wiles, D., Roest, J., Vivian, J.P., Beddoe, T.
PDB entry 9opu: Structure of a constitutively open human TRPC3 mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-05-20
Authors: Bell, B., Baker, M.L., Cordero-Morales, J.F.
PDB entry 9opv: Herpes simplex virus type 1 (HSV-1) C-Capsid portal turrets
Classification: VIRAL PROTEIN
Source organism: Human alphaherpesvirus 1 strain KOS
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-05-20
Authors: Crofut, E.H., Kashyap, S., Stevens, A., Jih, J., Liu, Y.-T., Zhou, Z.H.
PDB entry 9opw: Structure of the sweet receptor in the apo state, extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9opx: Structure of the sweet receptor in the apo state, transmembrane domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9opy: Structure of the sweet receptor in the apo state
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.
PDB entry 9opz: Structure of the sweet receptor bound to sucralose in the compact state, extracellular domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-05-20
Authors: Wang, H., Chen, X., Dai, Y., Lee, C.H.