LiteFold/PDB huggingface dataset:
PDB entry 5yj2: Crystal structure of Bacillus sp. TB-90 urate oxidase without dehydration
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. (strain TB-90)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2017-10-07
Authors: Hibi, T., Itoh, T., Nishiya, Y.
PDB entry 5yj3: Crystal structure of TZAP and telomeric DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.845 Å
Deposited: 2017-10-07
Authors: Li, F., Zhao, Y.
PDB entry 5yj4: structure for the protective mutant G127V of Human prion protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-10-07
Authors: Zheng, Z., Lin, D.
PDB entry 5yj5: structure for wildtype Human prion protein (M129)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-10-08
Authors: Zheng, Z., Lin, D.
PDB entry 5yj6: The exoglucanase CelS from Clostridium thermocellum
Classification: HYDROLASE
Source organism: Ruminiclostridium thermocellum DSM 1313
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2017-10-09
Authors: Liu, Y.J., Liu, S.Y., Dong, S., Li, R.M., Feng, Y.G., Cui, Q.
PDB entry 5yj7: Structural insight into the beta-GH1 glucosidase BGLN1 from oleaginous microalgae Nannochloropsis
Classification: HYDROLASE
Source organism: Nannochloris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2017-10-09
Authors: Dong, S., Liu, Y.J., Zhou, H.X., Xiao, Y., Xu, J., Cui, Q., Wang, X.Q., Feng, Y.G.
PDB entry 5yj8: Identification of a small molecule inhibitor for the Tudor domain of TDRD3
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.762 Å
Deposited: 2017-10-09
Authors: Liu, J., Ruan, K.
PDB entry 5yj9: Crystal structure of Tribolium castaneum PINK1 kinase domain in complex with AMP-PNP
Classification: TRANSFERASE
Source organism: Tribolium castaneum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2017-10-09
Authors: Okatsu, K., Sato, Y., Fukai, S.
PDB entry 5yja: Crystal structure of highly active BTUO mutant P287G without dehydration
Classification: OXIDOREDUCTASE
Source organism: Bacillus sp. (strain TB-90)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2017-10-09
Authors: Hibi, T., Itoh, T., Nishiya, Y.
PDB entry 5yjb: LSD1-CoREST in complex with 4-[5-(piperidin-4-ylmethoxy)-2-(p-tolyl)pyridin-3-yl]benzonitrile
Classification: OXIDOREDUCTASE/TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2017-10-10
Authors: Niwa, H., Sato, S., Hashimoto, T., Matsuno, K., Umehara, T.
PDB entry 5yjc: Structural insights into the CRISPR-Cas-associated ribonuclease activity of Staphylococcus epidermidis Csm6
Classification: HYDROLASE
Source organism: Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.007 Å
Deposited: 2017-10-10
Authors: Zhao, Y.Q., Gu, Y.J., Zhu, X.F., Cheng, W.
PDB entry 5yjd: Structural insights into the CRISPR-Cas-associated ribonuclease activity of Staphylococcus epidermidis Csm3
Classification: HYDROLASE
Source organism: Staphylococcus epidermidis RP62A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2017-10-10
Authors: Zhao, Y.Q., Gu, Y.J., Zhu, X.F., Cheng, W.
PDB entry 5yje: Crystal structure of HIRA(644-1017)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2017-10-10
Authors: Sato, Y., Senda, M., Senda, T.
PDB entry 5yjf: Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with small molecule analog of Nicotinamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2017-10-10
Authors: Swaminathan, S., Birudukota, S., Thakur, M.K., Parveen, R., Kandan, S., Hallur, M.S., Rajagopal, S., Ruf, S., Dhakshinamoorthy, S., Kannt, A., Gosu, R.
PDB entry 5yjg: Structural insights into periostin functions
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.399 Å
Deposited: 2017-10-10
Authors: Liu, H., Liu, J., Xu, F.
PDB entry 5yjh: Structural insights into periostin functions
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.957 Å
Deposited: 2017-10-10
Authors: Liu, H., Liu, J., Xu, F.
PDB entry 5yji: Co-crystal structure of Mouse Nicotinamide N-methyltransferase (NNMT) with small molecule analog of Nicotinamide
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2017-10-10
Authors: Birudukota, S., Swaminathan, S., Thakur, M.K., Parveen, R., Kandan, S., Hallur, M.S., Rajagopal, S., Ruf, S., Dhakshinamoorthy, S., Kannt, A., Gosu, R.
PDB entry 5yjj: Crystal structure of PNPase from Staphylococcus epidermidis
Classification: CYTOSOLIC PROTEIN
Source organism: Staphylococcus epidermidis (strain ATCC 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-10-10
Authors: Raj, R., Gopal, B.
PDB entry 5yjk: Human kallikrein 7 in complex with 1,4-diazepane-7-one 1-acetamide derivative
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-10-11
Authors: Sugawara, H.
PDB entry 5yjl: Crystal structure of Arabidopsis glutamyl-tRNA reductase in complex with NADPH and GBP
Classification: PHOTOSYNTHESIS
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-10-11
Authors: Zhao, A., Han, F.
PDB entry 5yjm: Human chymase in complex with 7-oxo-3-(phenoxyimino)-1,4-diazepane derivative
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-10-11
Authors: Sugawara, H.
PDB entry 5yjo: Crystal structure of SmyD3 in complex with covalent inhibitor 4
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.135 Å
Deposited: 2017-10-11
Authors: Baburajendran, N., Anna E, J.
PDB entry 5yjp: Human chymase in complex with 3-(ethoxyimino)-7-oxo-1,4-diazepane derivative
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-10-11
Authors: Sugawara, H.
PDB entry 5yjs: Structure of vicilin from Capsicum annuum
Classification: PLANT PROTEIN
Source organism: Capsicum annuum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2017-10-11
Authors: Shikhi, M., Nair, D.T., Salunke, D.M.
PDB entry 5yjw: Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with the competitive inhibitor, stigmatellin.
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-10-11
Authors: Yamasita, T., Inaoka, D.K., Shiba, T., Oohashi, T., Iwata, S., Yagi, T., Kosaka, H., Harada, S., Kita, K., Hirano, K.
PDB entry 5yjx: Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with myxothiazol.
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2017-10-11
Authors: Yamasita, T., Inaoka, D.K., Shiba, T., Oohashi, T., Iwata, S., Yagi, T., Kosaka, H., Harada, S., Kita, K., Hirano, K.
PDB entry 5yjy: Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with AC0-12.
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2017-10-11
Authors: Yamasita, T., Inaoka, D.K., Shiba, T., Oohashi, T., Iwata, S., Yagi, T., Kosaka, H., Harada, S., Kita, K., Hirano, K.
PDB entry 5yjz: The native crystal structure of Rv3197 from Mycobacterium tuberculosis
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2017-10-11
Authors: Zhang, Q.Q., Rao, Z.H.
PDB entry 5yk0: The complex structure of Rv3197-ADP from Mycobacterium tuberculosis
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.102 Å
Deposited: 2017-10-11
Authors: Rao, Z.H., Zhang, Q.Q.
PDB entry 5yk1: The complex structure of Rv3197-AMPPNP from Mycobacterium tuberculosis
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.103 Å
Deposited: 2017-10-11
Authors: Rao, Z.H., Zhang, Q.Q.
PDB entry 5yk2: The complex structure of Rv3197-erythromycin from Mycobacterium tuberculosis
Classification: TRANSPORT PROTEIN
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.807 Å
Deposited: 2017-10-11
Authors: Rao, Z.H., Zhang, Q.Q.
PDB entry 5yk3: human Ragulator complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2017-10-12
Authors: Wu, G., Mu, Z.
PDB entry 5yk4: Mismatch Repair Protein
Classification: DNA BINDING PROTEIN
Source organism: Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2017-10-12
Authors: Nirwal, S., Nair, D.T.
PDB entry 5yk5: structure of the human Lamtor4-Lamtor5 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2017-10-12
Authors: Wu, G., Mu, Z.
PDB entry 5yk6: Crystal Structure of Mmm1
Classification: LIPID TRANSPORT
Source organism: Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2017-10-12
Authors: Jeong, H., Park, J., Lee, C.
PDB entry 5yk7: Crystal Structure of Mdm12-Mmm1 complex
Classification: LIPID TRANSPORT
Source organism: Saccharomyces cerevisiae; Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.799 Å
Deposited: 2017-10-12
Authors: Jeong, H., Park, J., Lee, C.
PDB entry 5yk9: Crystal structure of selenomethionine-labelled indole prenyltransferase AmbP1
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 3.001 Å
Deposited: 2017-10-12
Authors: Awakawa, T., Nakashima, Y., Liu, X., Abe, I.
PDB entry 5yka: Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with cobalt(II)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methylacidiphilum infernorum (isolate V4)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.448 Å
Deposited: 2017-10-12
Authors: Chung, H.S., Pemble, C.W., Joo, S.H., Raetz, C.R.
PDB entry 5ykb: The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site conformation
Classification: ISOMERASE
Source organism: Deinococcus radiodurans str. R1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2017-10-13
Authors: Chow, S.Y., Hsieh, Y.C., Liaw, S.H.
PDB entry 5ykc: crystal structure of H5 hemagglutinin from A/chicken/Taiwan/0502/2012
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/chicken/Taiwan/0502/2012(H5N2))
Experimental method: X-RAY DIFFRACTION
Resolution: 2.823 Å
Deposited: 2017-10-13
Authors: Lin, T.H., Lee, M.S., Wu, W.G.
PDB entry 5ykd: Crystal structure of dihydropyrimidinase from Pseudomonas aeruginosa PAO1 at 2.17 angstrom resolution
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2017-10-14
Authors: Huang, Y.H., Huang, C.Y.
PDB entry 5yke: Structure of pancreatic ATP-sensitive potassium channel bound with glibenclamide and ATPgammaS (focused refinement on TM at 4.11A)
Classification: MEMBRANE PROTEIN
Source organism: Mesocricetus auratus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.11 Å
Deposited: 2017-10-14
Authors: Chen, L., Wu, J.X.
PDB entry 5ykf: Structure of pancreatic ATP-sensitive potassium channel bound with glibenclamide and ATPgammaS (3D class1 at 4.33A)
Classification: MEMBRANE PROTEIN
Source organism: Mesocricetus auratus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.33 Å
Deposited: 2017-10-14
Authors: Chen, L., Wu, J.X.
PDB entry 5ykg: Structure of pancreatic ATP-sensitive potassium channel bound with glibenclamide and ATPgammaS (Class2 at 4.57A)
Classification: MEMBRANE PROTEIN
Source organism: Mesocricetus auratus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.57 Å
Deposited: 2017-10-14
Authors: Chen, L., Wu, J.X.
PDB entry 5ykh: Crystal structure of the engineered nine-repeat PUF domain
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.457 Å
Deposited: 2017-10-14
Authors: Zhao, Y.Y., Wang, J., Li, H.T., Wang, Z.X., Wu, J.W.
PDB entry 5yki: Crystal structure of the engineered nine-repeat PUF domain in complex with cognate 9nt-RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2017-10-14
Authors: Zhao, Y.Y., Wang, J., Li, H.T., Wang, Z.X., Wu, J.W.
PDB entry 5ykj: Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2017-10-14
Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C., Bao, R.
PDB entry 5ykk: Antimicrobial peptide Andersonin-Y1 (AY1)
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2017-10-15
Authors: Pal, I., Atreya, H.S., Bhunia, A.
PDB entry 5ykl: Antimicrobial peptide AY1C designed from the skin secretion of Chinese Odorous frogs
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2017-10-15
Authors: Pal, I., Atreya, H.S., Bhunia, A.
PDB entry 5ykn: crystal structure of Arabidopsis thaliana JMJ14 catalytic domain
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-10-15
Authors: Yang, Z., Du, J.
PDB entry 5yko: Crystal structure of Arabidopsis thaliana JMJ14 catalytic domain in complex with NOG and H3K4me3 peptide
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-10-15
Authors: Yang, Z., Du, J.
PDB entry 5ykp: Human methionine aminopeptidase type 1b (F309M mutant) in complex with ovalicin
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2017-10-15
Authors: Arya, T., Pillalamarri, V., Addlagatta, A.
PDB entry 5ykq: Designed peptide CAY1 from Odorrana andersonii skin secretion
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2017-10-15
Authors: Pal, I., Atreya, H.S., Bhunia, A.
PDB entry 5ykr: Crystal structure of a glutamate-1-semialdehyde-aminomutase from Pseudomonas aeruginosa PAO1
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2017-10-16
Authors: Li, S., Zhang, Q., Bartlam, M.
PDB entry 5yks: Crystal structure of sucrose nonfermenting-related kinase (SNRK)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2017-10-16
Authors: Wang, Y.L., Wang, J., Wu, J.W.
PDB entry 5ykt: Crystal structure of a glutamate-1-semialdehyde-aminomutase (K286A) from Pseudomonas aeruginosa PAO1 in complex with PMP
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2017-10-16
Authors: Li, S., Zhang, Q., Bartlam, M.
PDB entry 5yku: The crystal structure of Macrobrachium rosenbergii nodavirus P-domain with Zn ions
Classification: VIRAL PROTEIN
Source organism: Macrobrachium rosenbergii nodavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2017-10-16
Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
PDB entry 5ykv: The crystal structure of Macrobrachium rosenbergii nodavirus P-domain
Classification: VIRAL PROTEIN
Source organism: Macrobrachium rosenbergii nodavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2017-10-16
Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
PDB entry 5ykw: Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae S288c
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2017-10-16
Authors: Li, C.C., Yang, J., Yang, M.J., Liu, L., Peng, C.T., Li, T., He, L.H., Song, Y.J., Zhu, Y.B., Zhao, N.L., Zhao, C., Bao, R.
PDB entry 5ykx: The crystal structure of Macrobrachium rosenbergii nodavirus P-domain with Cd ion
Classification: VIRAL PROTEIN
Source organism: Macrobrachium rosenbergii nodavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-10-16
Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
PDB entry 5yky: Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked with 10 mM Rose Bengal and 10mM H2PtCl6
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2017-10-16
Authors: Tabe, H., Takahashi, H., Shimoi, T., Abe, S., Ueno, T., Yamada, Y.
PDB entry 5ykz: The crystal structure of Penaeus vannamei nodavirus P-domain (P21)
Classification: VIRAL PROTEIN
Source organism: Penaeus vannamei nodavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2017-10-16
Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
PDB entry 5yl0: The crystal structure of Penaeus vannamei nodavirus P-domain (P212121)
Classification: VIRAL PROTEIN
Source organism: Penaeus vannamei nodavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2017-10-16
Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
PDB entry 5yl1: T=1 subviral particle of Penaeus vannamei nodavirus capsid protein deletion mutant (delta 1-37 & 251-368)
Classification: VIRAL PROTEIN
Source organism: Penaeus vannamei nodavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2017-10-16
Authors: Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
PDB entry 5yl2: Crystal structure of T2R-TTL-Y28 complex
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2017-10-16
Authors: Yang, J.H., Yang, T., Wen, J.L., Chen, L.J.
PDB entry 5yl3: Crystal structure of horse heart myoglobin reconstituted with manganese porphycene in resting state at pH 8.5
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-10-17
Authors: Oohora, K., Meichin, H., Kihira, Y., Sugimoto, H., Shiro, Y., Hayashi, T.
PDB entry 5yl4: CRYSTAL STRUCTURE OF T2R-TTL-8WR COMPLEX
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus barbatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2017-10-17
Authors: Fu, Z.Y., Li, W.B., Chu, Y.Y., Hou, Y.W., Ji, C.P.
PDB entry 5yl5: Crystal structure of dodecameric Dehydroquinate dehydratase from Acinetobacter baumannii at 1.9A resolution
Classification: LYASE
Source organism: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-10-17
Authors: Iqbal, N., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5yl6: Crystal structure of Ofd2 in complex with 2OG from Schizosaccharomyces pombe
Classification: OXIDOREDUCTASE
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2017-10-17
Authors: Wang, J., Gao, Y.X., Guo, G.R., Zhu, Z.L., Teng, M.K., Niu, L.W.
PDB entry 5yl7: Proteases from Pseudoalteromonas arctica PAMC 21717 (Pro21717)
Classification: HYDROLASE
Source organism: Pseudoalteromonas arctica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2017-10-17
Authors: Lee, J.H., Lee, C.W.
PDB entry 5yl8: The crystal structure of inactive dimeric peptidyl-tRNA hydrolase from Acinetobacter baumannii at 1.79 A resolution
Classification: HYDROLASE
Source organism: Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2017-10-17
Authors: Bairagya, H.R., Sharma, P., Iqbal, N., Singh, P.K., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5yl9: 1.86 Angstrom crystal structure of human Coronavirus 229E fusion core
Classification: VIRAL PROTEIN
Source organism: Human coronavirus 229E
Experimental method: X-RAY DIFFRACTION
Resolution: 1.861 Å
Deposited: 2017-10-17
Authors: Yang, B., Yan, L., Meng, B., WIlson, I.A.
PDB entry 5yla: Crystal structure of a dimeric peptidyl-tRNA hydrolase from Acinetobacter baumannii at 1.67 A resolution
Classification: HYDROLASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2017-10-17
Authors: Singh, P.K., Sharma, P., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5ylb: Crystal structure of Ofd2 from Schizosaccharomyces pombe at 1.80 A
Classification: OXIDOREDUCTASE
Source organism: Schizosaccharomyces pombe  (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2017-10-17
Authors: Wang, J., Gao, Y.X., Guo, G.R., Zhu, Z.L., Teng, M.K., Niu, L.W.
PDB entry 5ylc: Crystal Structure of MCR-1 Catalytic Domain
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-10-17
Authors: Wei, P.C., Song, G.J., Shi, M.Y., Zhou, Y.F., Liu, Y., Lei, J., Chen, P., Yin, L.
PDB entry 5yle: MCR-1 complex with ethanolamine (ETA)
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2017-10-17
Authors: Wei, P.C., Song, G.J., Shi, M.Y., Zhou, Y.F., Liu, Y., Lei, J., Chen, P., Yin, L.
PDB entry 5ylf: MCR-1 complex with D-glucose
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-10-17
Authors: Wei, P.C., Song, G.J., Shi, M.Y., Zhou, Y.F., Liu, Y., Lei, J., Chen, P., Yin, L.
PDB entry 5ylg: Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
Classification: SUGAR BINDING PROTEIN
Source organism: Pteris ryukyuensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2017-10-17
Authors: Ohnuma, T., Kitaoku, Y., Umemoto, N., Numata, T., Fukamizo, T.
PDB entry 5ylh: Structure of GH113 beta-1,4-mannanase
Classification: HYDROLASE
Source organism: Amphibacillus xylanus NBRC 15112
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2017-10-17
Authors: Jiang, Z.Q., You, X., Yang, S.Q., Huang, P., Ma, J.W.
PDB entry 5yli: Complex structure of GH113 beta-1,4-mannanase
Classification: HYDROLASE
Source organism: Amphibacillus xylanus NBRC 15112
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2017-10-17
Authors: Jiang, Z.Q., You, X., Yang, S.Q., Huang, P., Ma, J.W.
PDB entry 5ylj: Crystal structure of T2R-TTL-Millepachine complex
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-10-17
Authors: Yang, J.H., Chen, L.J.
PDB entry 5ylk: Complex structure of GH 113 family beta-1,4-mannanase with mannobiose
Classification: HYDROLASE
Source organism: Amphibacillus xylanus NBRC 15112
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2017-10-17
Authors: Jiang, Z.Q., You, X., Yang, S.Q., Huang, P., Ma, J.W.
PDB entry 5yll: Structure of GH113 beta-1,4-mannanase complex with M6.
Classification: HYDROLASE
Source organism: Amphibacillus xylanus NBRC 15112
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2017-10-17
Authors: Jiang, Z.Q., You, X., Yang, S.Q., Huang, P., Ma, J.W.
PDB entry 5yln: Zinc dependent alcohol dehydrogenase 2 from Streptococcus pneumonia - apo form
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.189 Å
Deposited: 2017-10-18
Authors: Donghyuk, S., Seungsu, H., Sangho, L.
PDB entry 5ylo: Structural of Pseudomonas aeruginosa PA4980
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2017-10-18
Authors: Liu, L., Li, T., Peng, C.T., Li, C.C., Xiao, Q.J., He, L.H., Wang, N.Y., Bao, R.
PDB entry 5yls: Crystal structure of T2R-TTL-Y50 complex
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2017-10-18
Authors: Yang, J.H., Chen, L.J.
PDB entry 5ylt: Crystal structure of SET7/9 in complex with a cyproheptadine derivative
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2017-10-19
Authors: Hirano, T., Fujiwara, T., Niwa, H., Hirano, M., Ohira, K., Okazaki, Y., Sato, S., Umehara, T., Maemoto, Y., Ito, A., Yoshida, M., Kagechika, H.
PDB entry 5ylu: Crystal structure of the gastric proton pump complexed with vonoprazan
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79989 Å
Deposited: 2017-10-19
Authors: Abe, K., Irie, K., Nakanishi, H., Fujiyoshi, Y.
PDB entry 5ylv: Crystal structure of the gastric proton pump complexed with SCH28080
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79978 Å
Deposited: 2017-10-19
Authors: Abe, K., Irie, K., Nakanishi, H., Fujiyoshi, Y.
PDB entry 5ylw: CYP76AH1 from Salvia miltiorrhiza
Classification: OXIDOREDUCTASE
Source organism: Salvia miltiorrhiza
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-10-20
Authors: Chang, Z.
PDB entry 5ylx: Integrated illustration of a valid epitope based on the SLA class I structure and tetramer technique could carry forward the development of molecular vaccine in swine species
Classification: IMMUNE SYSTEM
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-10-20
Authors: Pan, X.C., Wei, X.H., Zhang, N., Xia, C.
PDB entry 5yly: Crystal structure of the cytochrome b5 reductase domain of Ulva prolifera nitrate reductase
Classification: FLAVOPROTEIN
Source organism: Ulva prolifera
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2017-10-20
Authors: Ma, Q., You, C.
PDB entry 5ylz: Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom
Classification: SPLICING
Source organism: Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2017-10-20
Authors: Wan, R., Yan, C., Bai, R., Lei, J., Shi, Y.
PDB entry 5ym0: The crystal structure of DHAD
Classification: LYASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.842 Å
Deposited: 2017-10-20
Authors: Zang, X., Huang, W.X., Cheng, R., Wu, L., Zhou, J.H., Tang, Y., Yan, Y.
PDB entry 5ym3: CYP76AH1-4pi from salvia miltiorrhiza
Classification: OXIDOREDUCTASE
Source organism: Salvia miltiorrhiza
Experimental method: X-RAY DIFFRACTION
Resolution: 2.601 Å
Deposited: 2017-10-20
Authors: Chang, Z.
PDB entry 5ym6: Crystal Structure of porcine delta coronavirus nsp9
Classification: RNA BINDING PROTEIN
Source organism: Porcine coronavirus HKU15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.803 Å
Deposited: 2017-10-21
Authors: Zeng, Z., Peng, G.Q.
PDB entry 5ym7: Crystal Structure of B562RIL without disulfide bond
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56225 Å
Deposited: 2017-10-21
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5ym8: Crystal Structure of porcine delta coronavirus nsp9-N7
Classification: RNA BINDING PROTEIN
Source organism: Porcine coronavirus HKU15
Experimental method: X-RAY DIFFRACTION
Resolution: 1.992 Å
Deposited: 2017-10-21
Authors: Zeng, Z., Peng, G.Q.
PDB entry 5ym9: Crystal Structure of the Deamidase from Legionella pneumophila
Classification: UNKNOWN FUNCTION
Source organism: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-10-21
Authors: Zhu, Z.L., Zhu, M.
PDB entry 5yma: Crystal structure of ribosome assembly factor Efg1
Classification: RIBOSOMAL PROTEIN
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.295 Å
Deposited: 2017-10-21
Authors: Shu, S., Ye, K.
PDB entry 5ymr: The Crystal Structure of IseG
Classification: LYASE
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2017-10-22
Authors: Lin, L., Zhang, J., Xing, M., Hua, G., Guo, C., Hu, Y., Wei, Y., Ang, E., Zhao, H., Zhang, Y., Yuchi, Z.
PDB entry 5yms: Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19] rotavirus
Classification: VIRAL PROTEIN
Source organism: Human rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2017-10-22
Authors: Sun, X., Dandi, L., Duan, Z.
PDB entry 5ymt: Functional and structural characterization of P[19] rotavirus VP8* interaction with histo-blood group antigens
Classification: VIRAL PROTEIN
Source organism: Human rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.199 Å
Deposited: 2017-10-22
Authors: Sun, X., Duan, Z.
PDB entry 5ymu: Functional and structural characterization of P[19] rotavirus VP8* interaction with histo-blood group antigens
Classification: VIRAL PROTEIN
Source organism: Porcine rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2017-10-22
Authors: Sun, X., Duan, Z.
PDB entry 5ymv: Crystal structure of 9-mer peptide from influenza virus in complex with BF2*1201
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.197 Å
Deposited: 2017-10-22
Authors: Xiao, J., Xiang, W., Qi, J., Chai, Y., Liu, W.J., Gao, G.F.
PDB entry 5ymw: Crystal structure of 8-mer peptide from Rous sarcoma virus in complex with BF2*1201
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2017-10-22
Authors: Xiao, J., Xiang, W., Qi, J., Chai, Y., Liu, W.J., Gao, G.F.
PDB entry 5ymx: Myxococcus xanthus MglA in GDP bound conformation
Classification: SIGNALING PROTEIN, HYDROLASE
Source organism: Myxococcus xanthus (strain DK 1622)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2017-10-22
Authors: Baranwal, J., Gayathri, P.
PDB entry 5ymy: The structure of the complex between Rpn13 and K48-diUb
Classification: PROTEIN BINDING/SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2017-10-22
Authors: Liu, Z., Dong, X., Gong, Z., Yi, H.W., Liu, K., Yang, J., Zhang, W.P., Tang, C.
PDB entry 5yn2: Crystal structure of apo Pullulanase from Klebsiella pneumoniae in space group P43212
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2017-10-24
Authors: Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
PDB entry 5yn3: Crystal structure of xylose isomerase from Piromyces sp. E2
Classification: ISOMERASE
Source organism: Piromyces sp. (strain E2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2017-10-24
Authors: Son, H.-F., Kim, K.-J.
PDB entry 5yn4: Crystal structure of dimeric peptidyl tRNA hydrolase from Acinetobacter baumannii with occluded substrate binding site at 1.47 A resolution
Classification: HYDROLASE
Source organism: Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2017-10-24
Authors: Singh, P.K., Sharma, P., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 5yn5: Crystal structure of MERS-CoV nsp10/nsp16 complex
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Guo, D.Y., Fan, C.P.
PDB entry 5yn6: Crystal structure of MERS-CoV nsp10/nsp16 complex bound to SAM
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.947 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Guo, D.Y., Fan, C.P.
PDB entry 5yn7: Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 0.1 mM beta-cyclodextrin
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.586 Å
Deposited: 2017-10-24
Authors: Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
PDB entry 5yn8: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAH
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Chen, Y., Guo, D.Y., Fan, C.P.
PDB entry 5yna: Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM alpha-cyclodextrin
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2017-10-24
Authors: Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
PDB entry 5ynb: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to Sinefungin
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Chen, Y., Guo, D.Y., Fan, C.P.
PDB entry 5ync: Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM beta-cyclodextrin
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2017-10-24
Authors: Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
PDB entry 5ynd: Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM gamma-cyclodextrin
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.227 Å
Deposited: 2017-10-24
Authors: Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
PDB entry 5yne: Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM alpha-cyclodextrin
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.199 Å
Deposited: 2017-10-24
Authors: Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
PDB entry 5ynf: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to m7GpppA
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.791 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Chen, Y., Guo, D.Y.
PDB entry 5yng: Crystal structure of SZ348 in complex with cyclopentene oxide
Classification: HYDROLASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.497 Å
Deposited: 2017-10-24
Authors: Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.
PDB entry 5ynh: Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM gamma-cyclodextrin
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2017-10-24
Authors: Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.
PDB entry 5yni: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAM and m7GpppG
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Chen, Y., Guo, D.Y., Fan, C.P.
PDB entry 5ynj: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to m7GpppG
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 2.043 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Chen, Y., Guo, D.Y., Fan, C.P.
PDB entry 5ynl: Structure of Glaciozyma antarctica Arginase Reveals Cold-active Adaptation via Increased Flexible Access to the Active Site
Classification: HYDROLASE
Source organism: Glaciozyma antarctica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2017-10-24
Authors: Quay, D.H.X., Yusof, N.Y., Illias, R.M., Firdaus-Raih, M., Abu-Bakar, F.D., Mahadi, N.M., Murad, A.M.A.
PDB entry 5ynm: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAM and m7GpppA
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Guo, D.Y., Fan, C.P.
PDB entry 5ynn: Crystal structure of MERS-CoV nsp16/nsp10complex bound to sinefungin and m7GpppG
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Guo, D.Y., Fan, C.P.
PDB entry 5yno: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAH and m7GpppA
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2017-10-24
Authors: Wei, S.M., Yang, L., Ke, Z.H., Guo, D.Y., Fan, C.P.
PDB entry 5ynp: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to sinefungin and m7GpppA
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2017-10-25
Authors: Wei, S.M., Yang, L., Ke, Z.H., Guo, D.Y., Fan, C.P.
PDB entry 5ynq: Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAH and m7GpppG
Classification: TRANSFERASE
Source organism: Human betacoronavirus 2c EMC/2012
Experimental method: X-RAY DIFFRACTION
Resolution: 1.958 Å
Deposited: 2017-10-25
Authors: Wei, S.M., Yang, L., Ke, Z.H., Guo, D.Y., Fan, C.P.
PDB entry 5ynr: Solution Structure of glia maturation factor from Caenorhabditis elegans
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: SOLUTION NMR
Deposited: 2017-10-25
Authors: Maheshwari, D., Shukla, V.K., Kumar, D., Arora, A.
PDB entry 5yns: Crystal structure of PETase R280A mutant from Ideonella sakaiensis
Classification: HYDROLASE
Source organism: Ideonella sakaiensis (strain 201-F6)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2017-10-25
Authors: Joo, S., Kim, K.-J.
PDB entry 5ynt: Crystal structure of an aromatic prenyltransferase FAMD1 from Fischerella ambigua UTEX 1903
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2017-10-25
Authors: Wang, J., Liu, W.D., Chen, C.C., Guo, R.T.
PDB entry 5ynu: Crystal structure of an aromatic prenyltransferase FAMD1 from Fischerella ambigua UTEX 1903 in complex with INN
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-10-25
Authors: Wang, J., Liu, W.D., Chen, C.C., Guo, R.T.
PDB entry 5ynv: Crystal structure of an aromatic prenyltransferase FAMD1 from Fischerella ambigua UTEX 1903 in complex with DMASPP
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-10-25
Authors: Wang, J., Liu, W.D., Chen, C.C., Guo, R.T.
PDB entry 5ynw: Crystal structure of an aromatic prenyltransferase FAMD1 from Fischerella ambigua UTEX 1903 in complex with DMASPP and INN
Classification: TRANSFERASE
Source organism: Fischerella ambigua UTEX 1903
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2017-10-25
Authors: Wang, J., Liu, W.D., Chen, C.C., Guo, R.T.
PDB entry 5ynx: Structure of house dust mite allergen Der f 21 in PEG400
Classification: ALLERGEN
Source organism: Dermatophagoides farinae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2017-10-25
Authors: Ng, C.L., Chew, F.T., Pang, S.L., Ho, K.L., Teh, A.H., Waterman, J., Rambo, R., Mathavan, I., Beis, K., Say, Y.H.
PDB entry 5yny: Structure of house dust mite allergen Der F 21 in PEG2KMME
Classification: ALLERGEN
Source organism: Dermatophagoides farinae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2017-10-25
Authors: Ng, C.L., Chew, F.T., Pang, S.L., Ho, K.L., Teh, A.H., Waterman, J., Rambo, R., Mathavan, I.
PDB entry 5ynz: Crystal structure of the dihydroorotase domain (K1556A) of human CAD
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.774 Å
Deposited: 2017-10-26
Authors: Huang, Y.H., Chen, K.L., Cheng, J.H., Huang, C.Y.
PDB entry 5yo1: Structure of ePepN E298A mutant in complex with Puromycin
Classification: HYDROLASE
Source organism: Escherichia coli K12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2017-10-26
Authors: Ganji, R.J., Reddi, R., Marapaka, A.K., Addlagatta, A.
PDB entry 5yo2: The crystal structure of Rv2747 from Mycobacterium tuberculosis in complex with Acetyl CoA and L-Arginine
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.997 Å
Deposited: 2017-10-26
Authors: Singh, E., Tiruttani Subhramanyam, U.K., Pal, R.K., Srinivasan, A., Gourinath, S., Das, U.
PDB entry 5yo3: Crystal Structure of B562RIL with engineered disulfide bond V16C-A29C
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2017-10-26
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5yo4: Crystal Structure of B562RIL with engineered disulfide bond K27C-A79C
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2017-10-26
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5yo5: Crystal Structure of B562RIL with engineered disulfide bond A20C-Q25C
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2017-10-26
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5yo6: Crystal Structure of B562RIL with engineered disulfide bond T9C-A36C
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.204 Å
Deposited: 2017-10-26
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5yo8: Crystal structure of beta-C25/C30/C35-prene synthase
Classification: LYASE
Source organism: Bacillus alcalophilus ATCC 27647 = CGMCC 1.3604
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2017-10-27
Authors: Fujihashi, M., Miki, K.
PDB entry 5yo9: Crystal structure of KAS III from Acinetobacter baumannii
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2017-10-27
Authors: Lee, W.C., Jung, M., Lee, J., Kim, Y.
PDB entry 5yoa: Crystal structure of KAS III from Acinetobacter baumannii
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2017-10-27
Authors: Lee, W.C., Jung, M., Lee, J., Kim, Y.
PDB entry 5yob: Crystal Structure of flavodoxin without engineered disulfide bond
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.142 Å
Deposited: 2017-10-27
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5yoc: Crystal Structure of flavodoxin with engineered disulfide bond C102-R125C
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2017-10-27
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5yod: Crystal structure of zika virus NS3 protease in complex with a small molecule inhibitor
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2017-10-27
Authors: Phoo, W.W., Zhang, Z.Z.
PDB entry 5yoe: Crystal Structure of flavodoxin with engineered disulfide bond A43C-L74C
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2017-10-27
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5yof: Crystal structure of zika virus NS3 protease in complex with a dipeptide inhibitor
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2017-10-27
Authors: Phoo, W.W., Zhang, Z.Z.
PDB entry 5yog: Crystal Structure of flavodoxin with engineered disulfide bond N14C-C93
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2017-10-27
Authors: Pu, M., Xu, Z., Song, G., Liu, Z.J.
PDB entry 5yoh: Mycobacterium Tuberculosis Methionine aminopeptidase type 1c (C105M mutant) in complex with Methionine
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Ra
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2017-10-27
Authors: Sandeep, C.B., Addlagatta, A.
PDB entry 5yoi: Mycobacterium Tuberculosis Methionine aminopeptidase type 1c (C105T mutant) in complex with Methionine
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2017-10-27
Authors: Sandeep, C.B., Addlagatta, A.