LiteFold/PDB huggingface dataset:
PDB entry 8qm8: Potential drug binding sites for translation initiation factor eIF4E
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.585 Å
Deposited: 2023-09-21
Authors: Cleasby, A.
PDB entry 8qm9: Potential drug binding sites for translation initiation factor eIF4E
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.973 Å
Deposited: 2023-09-21
Authors: Cleasby, A.
PDB entry 8qma: Structure of the plastid-encoded RNA polymerase complex (PEP) from Sinapis alba
Classification: TRANSCRIPTION
Source organism: Sinapis alba
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-21
Authors: do Prado, P.F.V., Ahrens, F.M., Pfannschmidt, T., Hillen, H.S.
PDB entry 8qmb: Nucleant-assisted 2.0 A resolution structure of the Streptococcus pneumoniae topoisomerase IV-V18mer DNA complex with the novel fluoroquinolone Delafloxacin
Classification: ISOMERASE
Source organism: Streptococcus pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-21
Authors: Najmudin, S., Pan, X.S., Wang, B., Chayen, N.E., Fisher, L.M., Sanderson, M.R.
PDB entry 8qmc: High resolution structure of the Streptococcus pneumoniae topoisomerase IV-complex with the V-site 18mer dsDNA and novel fluoroquinolone Delafloxacin
Classification: ISOMERASE
Source organism: Streptococcus pneumoniae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.402 Å
Deposited: 2023-09-21
Authors: Najmudin, S., Pan, X.S., Wang, B., Chayen, N.E., Fisher, L.M., Sanderson, M.R.
PDB entry 8qmd: Human NK cell receptor NKp80, extracellular domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-09-22
Authors: Blaha, J., Pazderova, K., Kalouskova, B., Wilmanns, M., Vanek, O.
PDB entry 8qme: Structural characterization of beta-xyloxidase XynB2 from Geobacillus stearothermophilus CECT43
Classification: HYDROLASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-09-22
Authors: Gavira, J.A., Martinez-Rodriguez, S.
PDB entry 8qmf: Transketolase from Vibrio vulnificus in complex with thiamin pyrophosphate
Classification: CYTOSOLIC PROTEIN
Source organism: Vibrio vulnificus YJ016
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-22
Authors: Ballut, L., Georges, R.N., Octobre, G., Charmantray, F., Doumeche, B.
PDB entry 8qmg: Tobacco lectin Nictaba in apo state including I and Eu SAD datasets.
Classification: SUGAR BINDING PROTEIN
Source organism: Nicotiana tabacum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-22
Authors: Bloch, Y., Savvides, S.N.
PDB entry 8qmh: Crystal structure of RNA G2C4 repeats in complex with small synthetic molecule ANP77
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-09-22
Authors: Kiliszek, A., Ryczek, M., Blaszczyk, L.
PDB entry 8qmi: Crystal structure of RNA G2C4 repeats - native model
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-22
Authors: Blaszczyk, L., Kiliszek, A.
PDB entry 8qmj: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124 soaked with hexa-mannuronic acid
Classification: LYASE
Source organism: Paradendryphiella salina
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2023-09-22
Authors: Wilkens, C.
PDB entry 8qmk: Enzymatically-produced complex-B bound TmHydE structure
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-09-22
Authors: Omeiri, J., Martin, L., Usclat, A., Cherrier, M.V., Nicolet, Y.
PDB entry 8qml: (2R,4R)-MeTDA bound HydE structure (control experiment)
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-22
Authors: Omeiri, J., Martin, L., Usclat, A., Cherrier, M.V., Nicolet, Y.
PDB entry 8qmm: M291I variant of the [FeFe]-hydrogenase maturase HydE from Thermotoga maritima
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-09-23
Authors: Omeiri, J., Martin, L., Usclat, A., Cherrier, M.V., Nicolet, Y.
PDB entry 8qmn: [FeFe]-hydrogenase maturase HydE from T. maritima - dialysis experiment - empty structure
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-09-23
Authors: Omeiri, J., Martin, L., Usclat, A., Cherrier, M.V., Nicolet, Y.
PDB entry 8qmo: Cryo-EM structure of the benzo[a]pyrene-bound Hsp90-XAP2-AHR complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-09-24
Authors: Kwong, H.S., Grandvuillemin, L., Sirounian, S., Ancelin, A., Lai-Kee-Him, J., Carivenc, C., Lancey, C., Ragan, T.J., Hesketh, E.L., Bourguet, W., Gruszczyk, J.
PDB entry 8qmp: Structure of the E2 Beryllium Fluoride Complex of the Autoinhibited Calcium ATPase ACA8
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-25
Authors: Thirup Larsen, S., Karlsen Dannersoe, J., Nissen, P.
PDB entry 8qmq: Succinic semialdehyde dehydrogenase from E. coli with bound NAD+
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-25
Authors: He, H., Zarzycki, J., Erb, T.J.
PDB entry 8qmr: Succinic semialdehyde dehydrogenase from E. coli with bound NAD+ and succinic semialdehyde
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-25
Authors: He, H., Zarzycki, J., Erb, T.J.
PDB entry 8qms: Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-25
Authors: He, H., Zarzycki, J., Erb, T.J.
PDB entry 8qmt: Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+, succinic semialdehyde
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-09-25
Authors: He, H., Zarzycki, J., Erb, T.J.
PDB entry 8qmu: The complex of Glycogen Phosphorylase with (-)-Epigallocatechin-3-gallate (EGCG).
Classification: TRANSFERASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-25
Authors: Alexopoulos, S., Papakostopoulou, S., Koulas, M.S., Leonidas, D.D., Skamnaki, V.
PDB entry 8qmv: L2 forming RubisCO derived from ancestral sequence reconstruction of the last common ancestor of Form I'' and Form I RubisCOs
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-09-25
Authors: Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.
PDB entry 8qmw: Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex with substitutions R269W, E271R, L273N
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-09-25
Authors: Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.
PDB entry 8qmx: OPR3 wildtype in complex with NADPH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-25
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qmy: Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase
Classification: FLAVOPROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-25
Authors: Boverio, A., Mattevi, A.
PDB entry 8qmz: Soluble epoxide hydrolase in complex with RK4
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-09-25
Authors: Kumar, A., Zhu, F., Ehrler, J.M.H., Li, F., Empel, C., Xu, Y., Atodiresei, I., Koenigs, R.M., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8qn0: Soluble epoxide hydrolase in complex with RK3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-09-25
Authors: Kumar, A., Zhu, F., Ehrler, J.M.H., Li, F., Empel, C., Xu, Y., Atodiresei, I., Koenigs, R.M., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)
PDB entry 8qn1: OPR3 variant - R283D
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-09-25
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qn2: Helical foldamers as selective G-quadruplex ligands
Classification: GENE REGULATION
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-09-25
Authors: Koenig, A., Thore, S., Gabelica, V.
PDB entry 8qn3: OPR3 wildtype in complex with NADH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-09-25
Authors: Bijelic, A., Macheroux, P., Keschbaumer, B.
PDB entry 8qn4: Structure of the BAM-EspP complex in an open EspP intermediate state
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-09-25
Authors: Xie, T., Pang, J., Shen, C., Chang, S., Tang, X., Zhang, X., Dong, H., Zhou, R.
PDB entry 8qn5: M. tuberculosis salicylate synthase MbtI in complex with methyl-AMT (new crystal form)
Classification: LYASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.544 Å
Deposited: 2023-09-25
Authors: Mori, M., Villa, S., Meneghetti, M., Bellinzoni, M.
PDB entry 8qn6: Amyloid-beta 40 type 2 filament from the leptomeninges of individual with Alzheimer's disease and cerebral amyloid angiopathy
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-09-25
Authors: Yang, Y., Murzin, A.S., Peak-Chew, S.Y., Franco, C., Newell, K.L., Ghetti, B., Goedert, M., Scheres, S.H.W.
PDB entry 8qn7: Amyloid-beta 40 type 1 filament from the leptomeninges of individual with Alzheimer's disease and cerebral amyloid angiopathy
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-09-25
Authors: Yang, Y., Murzin, A.S., Peak-Chew, S.Y., Franco, C., Newell, K.L., Ghetti, B., Goedert, M., Scheres, S.H.W.
PDB entry 8qn8: Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State II
Classification: TRANSCRIPTION
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-09-25
Authors: Koval, T., Krasny, L., Dohnalek, J., Kouba, T.
PDB entry 8qn9: OPR3 variant - R283E
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-09-26
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qna: OPR3 variant - R366A
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-09-26
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qnb: Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase: in complex with L-galactono-1,4-lactone
Classification: FLAVOPROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-09-26
Authors: Boverio, A., Mattevi, A.
PDB entry 8qnc: Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase: A113G variant
Classification: FLAVOPROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-09-26
Authors: Boverio, A., Mattevi, A.
PDB entry 8qnd: Crystal structure of the ribonucleoside hydrolase C from Lactobacillus reuteri
Classification: HYDROLASE
Source organism: Limosilactobacillus reuteri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-09-26
Authors: Matyuta, I.O., Minyaev, M.E., Shaposhnikov, L.A., Pometun, A.A., Tishkov, V.I., Popov, V.O., Boyko, K.M.
PDB entry 8qne: OPR3 variant with redesigned loop 6 (9aa)
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-26
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qnf: Crystal structure of the Condensation domain TomBC from the Tomaymycin non-ribosomal peptide synthetase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces regensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-09-26
Authors: Karanth, M., Schmelz, S., Kirkpatrick, J., Krausze, J., Scrima, A., Carlomagno, T.
PDB entry 8qng: Crystal structure of the E3 ubiquitin ligase Cbl-b with an allosteric inhibitor (benzodiazepine HTS hit compound 1)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.197 Å
Deposited: 2023-09-26
Authors: Schimpl, M.
PDB entry 8qnh: Crystal structure of the E3 ubiquitin ligase Cbl-b with an allosteric inhibitor (WO2020264398 Ex23)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.001 Å
Deposited: 2023-09-26
Authors: Schimpl, M.
PDB entry 8qni: Crystal structure of the E3 ubiquitin ligase Cbl-b with an allosteric inhibitor (benzodiazepine compound 25)
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.483 Å
Deposited: 2023-09-26
Authors: Schimpl, M.
PDB entry 8qnj: Folded alpha helical de novo proteins from Apilactobacillus kunkeei
Classification: UNKNOWN FUNCTION
Source organism: Apilactobacillus kunkeei
Experimental method: SOLUTION NMR
Deposited: 2023-09-26
Authors: Celestine, C.
PDB entry 8qnk: OPR3 variant R283D in complex with NADPH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-09-27
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qnl: Structure of the toxin-antitoxin NatRT complex from Pseudomonas aeruginosa
Classification: TOXIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-09-27
Authors: Dias Teixeira, R., Hiller, S., Jenal, U.
PDB entry 8qnm: OPR3 with redesigned Loop 6 (9aa) in complex with NADPH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-09-27
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qnn: Crystal structure of a Class A beta-lactamase from Nocardia cyriacigeorgica
Classification: HYDROLASE
Source organism: Nocardia cyriacigeorgica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-09-27
Authors: Feuillard, J., Couston, J., Benito, Y., Hodille, E., Dumitrescu, O., Blaise, M.
PDB entry 8qno: Crystal structure of S-adenosyl-L-homocysteine hydrolase treated at 368 K from Pyrococcus furiosus in complex with inosine
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.033 Å
Deposited: 2023-09-27
Authors: Saleem-Batcha, R., Koeppl, L.H., Popadic, D., Andexer, J.N.
PDB entry 8qnp: OPR3 with redesigned loop 6 (9aa) in complex with NADH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-09-27
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qnq: Structure of the toxin-antitoxin NatRT complex from Pseudomonas aeruginosa. NatTE29D mutant
Classification: TOXIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.386 Å
Deposited: 2023-09-27
Authors: Dias Teixeira, R., Hiller, S., Jenal, U.
PDB entry 8qnr: Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase: G413N variant in complex with L-gulono-1,4-lactone
Classification: FLAVOPROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-09-27
Authors: Boverio, A., Mattevi, A.
PDB entry 8qns: Crystal structure of murine AIF bound to N-terminal domain of CHCHD4
Classification: PROTEIN BINDING
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.206 Å
Deposited: 2023-09-27
Authors: Fagnani, E., Milani, M.
PDB entry 8qnt: Folded alpha helical de novo proteins from Apilactobacillus kunkeei
Classification: UNKNOWN FUNCTION
Source organism: Apilactobacillus kunkeei
Experimental method: SOLUTION NMR
Deposited: 2023-09-27
Authors: Celestine, C.
PDB entry 8qnu: Metarhizium robertsii Woronin body major protein (HEX-1)
Classification: STRUCTURAL PROTEIN
Source organism: Metarhizium robertsii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-09-27
Authors: Boger, J., Redecke, L.
PDB entry 8qnv: Folded alpha helical de novo proteins from Apilactobacillus kunkeei
Classification: UNKNOWN FUNCTION
Source organism: Apilactobacillus kunkeei
Experimental method: SOLUTION NMR
Deposited: 2023-09-27
Authors: Celestine, C.
PDB entry 8qnw: OPR3 variant with redesigned loop 6 (8aa)
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-09-27
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qnx: OPR3 variant with redesigned loop 6 (8aa) in complex with NADH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-09-27
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qny: OPR3 variant with redesigned loop 6 (8aa) in complex with NADPH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-09-27
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qnz: OXA-48 with carbamylated Lys73 in complex with hydrolysed Imipenem and bromide ion competing for binding with Arg250 at neutral pH
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2023-09-27
Authors: Zhou, Q., He, Y., Jin, Y.
PDB entry 8qo0: Asymmetric structure of the Borrelia bacteriophage BB1 procapsid, 3D class 2
Classification: VIRAL PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.62 Å
Deposited: 2023-09-27
Authors: Rumnieks, J., Fuzik, T., Tars, K.
PDB entry 8qo1: Asymmetric structure of the Borrelia bacteriophage BB1 procapsid, 3D class 3
Classification: VIRAL PROTEIN
Source organism: Borreliella burgdorferi B31
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.76 Å
Deposited: 2023-10-11
Authors: Rumnieks, J., Fuzik, T., Tars, K.
PDB entry 8qo2: Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Classification: VIRUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2023-09-27
Authors: Moura, T.R., Purta, E., Bernat, A., Baulin, E., Mukherjee, S., Bujnicki, J.M.
PDB entry 8qo3: Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Classification: VIRUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2023-09-28
Authors: Moura, T.R., Purta, E., Bernat, A., Baulin, E., Mukherjee, S., Bujnicki, J.M.
PDB entry 8qo4: Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Classification: VIRUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2023-09-28
Authors: Moura, T.R., Purta, E., Bernat, A., Baulin, E., Mukherjee, S., Bujnicki, J.M.
PDB entry 8qo5: Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Classification: VIRUS
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2023-09-28
Authors: Moura, T.R., Purta, E., Bernat, A., Baulin, E., Mukherjee, S., Bujnicki, J.M.
PDB entry 8qo6: OPR3 variant R283D in complex with NADH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2023-09-28
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qo7: OPR3 variant R283E in complex with NADPH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-28
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qo8: OPR3 variant R283E in complex with NADH4
Classification: FLAVOPROTEIN
Source organism: Solanum lycopersicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-09-28
Authors: Bijelic, A., Macheroux, P., Kerschbaumer, B.
PDB entry 8qo9: Cryo-EM structure of a human spliceosomal B complex protomer
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.29 Å
Deposited: 2023-09-28
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Urlaub, H., Stark, H., Luehrmann, R.
PDB entry 8qoa: Structure of SecM-stalled Escherichia coli 70S ribosome
Classification: RIBOSOME
Source organism: Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2023-09-28
Authors: Gersteuer, F., Morici, M., Wilson, D.N.
PDB entry 8qob: Crystal structure of phosphoserine phosphatase (SerB) from Brucella melitensis in complex with AP3 and magnesium
Classification: HYDROLASE
Source organism: Brucella melitensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-09-28
Authors: Scaillet, T., Wouters, J.
PDB entry 8qoc: Crystal structure of Staphylococcus aureus PLP Synthase (Pdx1)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2023-09-28
Authors: Ullah, N., Wrenger, C., Betzel, C.
PDB entry 8qod: CRYSTAL STRUCTURE OF FVIIA IN COMPLEX WITH A BENZAMIDINE-BASED INHIBITOR
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.573 Å
Deposited: 2023-09-28
Authors: Schreuder, H.A., Liesum, A.
PDB entry 8qoe: Inward-facing conformation of the ABC transporter BmrA
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-09-28
Authors: Di Cesare, M., Kaplan, E., Valimehr, S., Hanssen, E., Orelle, C., Jault, J.M.
PDB entry 8qof: Cryo-EM structure of the yeast SPT-Orm2-Dimer complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-09-28
Authors: Schaefer, J., Koerner, C., Moeller, A., Froehlich, F.
PDB entry 8qog: Cryo-EM structure of the yeast SPT-Orm2-Monomer complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-28
Authors: Schaefer, J., Koerner, C., Moeller, A., Froehlich, F.
PDB entry 8qoh: Crystal structure of the kinetoplastid kinetochore protein KKT14 C-terminal domain from Apiculatamorpha spiralis
Classification: CELL CYCLE
Source organism: Apiculatamorpha spiralis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-09-28
Authors: Carter, W., Ballmer, D., Ishii, M., Ludzia, P., Akiyoshi, B.
PDB entry 8qoi: Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2023-09-29
Authors: Holvec, S., Barchet, C., Frechin, L., Hazemann, I., von Loeffelholz, O., Klaholz, B.P.
PDB entry 8qoj: human connexin-36 gap junction channel in complex with mefloquine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Deposited: 2023-09-29
Authors: Ding, X.Y., Blum, T.B., Korkhov, V.M.
PDB entry 8qok: Capra hircus reactive intermediate deaminase A mutant - E124A
Classification: UNKNOWN FUNCTION
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-09-29
Authors: Rizzi, G., Visentin, C., Ricagno, S.
PDB entry 8qom: Capra hircus reactive intermediate deaminase A mutant - R107W
Classification: UNKNOWN FUNCTION
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.654 Å
Deposited: 2023-09-29
Authors: Rizzi, G., Visentin, C., Di Pisa, F., Ricagno, S.
PDB entry 8qoo: Crystal structure of human Sirt2 in complex with the peptide-based pseudo-inhibitor TNFn-4.1
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-09-29
Authors: Friedrich, F., Kalbas, D., Meleshin, M., Einsle, O., Schutkowski, M., Jung, M.
PDB entry 8qop: Capra hircus reactive intermediate deaminase A - K78A
Classification: UNKNOWN FUNCTION
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-29
Authors: Rizzi, G., Visentin, C., Ricagno, S.
PDB entry 8qoq: Capra hircus reactive intermediate deaminase A mutant - R107A
Classification: UNKNOWN FUNCTION
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.214 Å
Deposited: 2023-09-29
Authors: Rizzi, G., Visentin, C., Ricagno, S.
PDB entry 8qor: Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2023-09-29
Authors: El-Khoury, R., Cabrero, C., Movilla, S., Friedland, D., Thorpe, J.D., Roman, M., Orozco, M., Gonzalez, C., Damha, M.
PDB entry 8qos: Capra hircus reactive intermediate deaminase A - V25W
Classification: UNKNOWN FUNCTION
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-09-29
Authors: Rizzi, G., Visentin, C., Di Pisa, F., Ricagno, S.
PDB entry 8qot: Structure of the mu opioid receptor bound to the antagonist nanobody NbE
Classification: MEMBRANE PROTEIN
Source organism: Lama glama; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-09-29
Authors: Yu, J., Kumar, A., Zhang, X., Martin, C., Raia, P., Manglik, A., Ballet, S., Boland, A., Stoeber, M.
PDB entry 8qou: Reactive intermediate deaminase A mutant - R107K
Classification: UNKNOWN FUNCTION
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-09-29
Authors: Rizzi, G., Visentin, C., Di Pisa, F., Ricagno, S.
PDB entry 8qov: Capra hircus reactive intermediate deaminase A mutant - I126Y
Classification: UNKNOWN FUNCTION
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-09-29
Authors: Rizzi, G., Visentin, C., Di Pisa, F., Ricagno, S.
PDB entry 8qow: LTA4 hydrolase in complex with compound 2(S)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-09-29
Authors: Srinivas, H.
PDB entry 8qox: Two-component assembly of SlaA and SlaB S-layer proteins of Sulfolobus acidocaldarius
Classification: STRUCTURAL PROTEIN
Source organism: Sulfolobus acidocaldarius DSM 639
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.2 Å
Deposited: 2023-09-29
Authors: Gambelli, L., McLaren, M., Isupov, M., Conners, R., Daum, B.
PDB entry 8qoy: Capsular polysaccharide synthesis multienzyme of Actinobacillus Pleuropneumoniae serotype 3
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinobacillus pleuropneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-09-29
Authors: Di Domenico, V., Litschko, C., Schulze, J., Bethe, A., Cifuente, J.O., Marina, A., Budde, I., Mast, T.A., Sulewska, M., Berger, M., Buettner, F., Gerardy-Schahn, R., Fiebig, T., Guerin, M.E.
PDB entry 8qoz: Cryo-EM Structure of Pre-B+5'ss+ATPgammaS Complex (core part)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-09-29
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qp0: A hexamer pore in the S-layer of Sulfolobus acidocaldarius formed by SlaA protein
Classification: STRUCTURAL PROTEIN
Source organism: Sulfolobus acidocaldarius DSM 639
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.2 Å
Deposited: 2023-09-29
Authors: Gambelli, L., McLaren, M., Isupov, M., Conners, R., Daum, B.
PDB entry 8qp5: Release Complex: BAM bound EspP (SurA released)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-09-29
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8qp6: Crystal structure of Hepatitis C Virus E1 glycoprotein epitope 314-324 scaffold design 1W4K_08 in complex with neutralizing antibody F(ab) fragment IGH526
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Pyrobaculum aerophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-09-30
Authors: Nagarathinam, K., Krey, T.
PDB entry 8qp7: Crystal structure of Hepatitis C Virus E2 glycoprotein epitopeI 411-424 scaffold design 4CIL_04
Classification: STRUCTURAL PROTEIN
Source organism: Yersinia enterocolitica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-09-30
Authors: Nagarathinam, K., Cramer, J.T., Krey, T.
PDB entry 8qp8: Cryo-EM Structure of Pre-B Complex (core part)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-09-30
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qp9: Cryo-EM Structure of Pre-B+AMPPNP Complex (core part)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-09-30
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qpa: Cryo-EM Structure of Pre-B+5'ssLNG Complex (core part)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-01
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qpb: Cryo-EM Structure of Pre-B+ATP Complex (core part)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-10-01
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qpc: 18mer DNA mimic Foldamer with an Aromatic linker in complex with Sac7d V26A/M29A protein
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus acidocaldarius; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2023-10-01
Authors: Deepak, D., Corvaglia, V., Wu, J., Huc, I.
PDB entry 8qpd: Structure of thioredoxin m from pea
Classification: PLANT PROTEIN
Source organism: Pisum sativum
Experimental method: SOLUTION NMR
Deposited: 2023-10-01
Authors: Neira, J.L., Camara Artigas, A.
PDB entry 8qpe: Cryo-EM Structure of Pre-B-like Complex (core part)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-10-01
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qpf: Ammonium Transporter Amt1 from Shewanella denitrificans
Classification: TRANSPORT PROTEIN
Source organism: Shewanella denitrificans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-10-01
Authors: Gschell, M., Zhang, L., Einsle, O., Andrade, S.
PDB entry 8qpg: Turret of Haloferax tailed virus 1
Classification: VIRUS
Source organism: Haloferax tailed virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2023-10-02
Authors: Zhang, D., Daum, B., Isupov, M.N., McLaren, M.
PDB entry 8qph: Crystal structure of Lymantria dispar CPV14 polyhedra 14 crystals
Classification: VIRAL PROTEIN
Source organism: Lymantria dispar
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2023-10-02
Authors: Trincao, J., Warren, A., Crawshaw, A., Sutton, G., Stuart, D., Evans, G.
PDB entry 8qpj: FAD-independent Methylene-Tetrahydrofolate Reductase Mutant E9Q from Mycobacterium hassiacum
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium hassiacum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-10-02
Authors: Gehl, M., Demmer, U., Ermler, U., Shima, S.
PDB entry 8qpk: Cryo-EM Structure of Pre-B+5'ss Complex (core part)
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-10-02
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8qpl: F420-Dependent Methylene-Tetrahydromethanopterin Reductase with F420 from Methanocaldococcus jannaschii
Classification: OXIDOREDUCTASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-10-02
Authors: Gehl, M., Demmer, U., Ermler, U., Shima, S.
PDB entry 8qpm: Structure of methylene-tetrahydromethanopterin reductase from Methanocaldococcus jannaschii
Classification: OXIDOREDUCTASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-10-02
Authors: Gehl, M., Demmer, U., Ermler, U., Shima, S.
PDB entry 8qpn: LTA4 hydrolase in complex with compound 6(S)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-02
Authors: Srinivas, H.
PDB entry 8qpo: E. coli NfsB with the unnatural amino acid p-nitrophenylalanine at position 124.
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli DH5[alpha]
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-10-02
Authors: Day, M.A., White, S.A., Hyde, E.I.
PDB entry 8qpp: Bacillus subtilis MutS2-collided disome complex (stalled 70S)
Classification: RIBOSOME
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-10-02
Authors: Park, E., Mackens-Kiani, T., Berhane, R., Esser, H., Erdenebat, C., Burroughs, A.M., Berninghausen, O., Aravind, L., Beckmann, R., Green, R., Buskirk, A.R.
PDB entry 8qpq: C1 turret to capsid interface of full Haloferax tailed virus 1 adjacent to the portal-capsid interface.
Classification: VIRUS
Source organism: Haloferax tailed virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-10-02
Authors: Zhang, D., Daum, B., Isupov, M.N., McLaren, M.
PDB entry 8qpr: SARS-CoV-2 S protein bound to human neutralising antibody UZGENT_G5
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; Tequatrovirus T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-10-03
Authors: Remaut, H., Reiter, D., Vandenkerckhove, L., Acar, D.D., Witkowski, W., Gerlo, S.
PDB entry 8qps: Deoxyribose-5-phosphate aldolase (DERA) from Geobacillus sp.
Classification: LYASE
Source organism: Geobacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-10-03
Authors: Paakkonen, J., Hakulinen, N., Rouvinen, J.
PDB entry 8qpt: Crystal structure of pyrophosphatase from Ogataea parapolymorpha
Classification: HYDROLASE
Source organism: Ogataea parapolymorpha
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-10-03
Authors: Matyuta, I.O., Rodina, E.V., Vorobyeva, N.N., Kurilova, S.A., Bezpalaya, E.Y., Boyko, K.M.
PDB entry 8qpu: Release Complex: BAM bound EspP and Extended SurA
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2023-10-03
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8qpv: Handover Complex: BAM bound OmpX and extended SurA
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-10-03
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8qpw: Arrival Complex: Lateral open BAM bound extended SurA plus OmpX
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-10-03
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8qpx: Crystal structure of Geodia cydonium Immunoglobulin-like domain of Receptor Tyrosine Kinase
Classification: IMMUNE SYSTEM
Source organism: Geodia cydonium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-10-03
Authors: Lopez-Sagaseta, J., Urdiciain, A.
PDB entry 8qpy: Solution NMR structure of the peptidyl carrier domain TomAPCP from the Tomaymycin non-ribosomal peptide synthetase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces regensis
Experimental method: SOLUTION NMR
Deposited: 2023-10-03
Authors: Karanth, M.N., Kirkpatrick, J.P., Carlomagno, T.
PDB entry 8qpz: CryoEM structure of recombinant DeltaN7 alpha-synuclein in PBS
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-10-03
Authors: Thacker, D., Wilkinson, M., Dewison, K.M., Ranson, N.A., Brockwell, D.J., Radford, S.E.
PDB entry 8qq0: SARS-CoV-2 S protein bound to neutralising antibody UZGENT_A3
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-10-03
Authors: Remaut, H., Reiter, D., Vandenkerckhove, L., Acar, D.D., Witkowski, W., Gerlo, S.
PDB entry 8qq1: SpNOX dehydrogenase domain, mutant F397W in complex with Flavin adenine dinucleotide (FAD)
Classification: MEMBRANE PROTEIN
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.941 Å
Deposited: 2023-10-03
Authors: Humm, A.S., Dupeux, F., Vermot, A., Petit-Harleim, I., Fieschi, F., Marquez, J.A.
PDB entry 8qq2: RNAPII elongation complex bound to RECQ5
Classification: TRANSCRIPTION
Source organism: Bos taurus; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-10-03
Authors: Skubnik, K., Sebesta, M., Stefl, R.
PDB entry 8qq3: Streptavidin with a Ni-cofactor
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-03
Authors: Zhang, K., Jakob, R.P., Ward, T.R.
PDB entry 8qq4: LTA4 hydrolase in complex with compound 6(R)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-10-03
Authors: Srinivas, H.
PDB entry 8qq5: Structure of WT SpNox DH domain: a bacterial NADPH oxidase.
Classification: ELECTRON TRANSPORT
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-10-03
Authors: Thepaut, M., Petit-Hartlein, I., Vermot, A., Humm, A.S., Dupeux, F., Marquez, J.A., Smith, S., Fieschi, F.
PDB entry 8qq6: CRYSTAL STRUCTURE OF FVIIA IN COMPLEX WITH A BENZAMIDINE-BASED INHIBITOR
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2023-10-03
Authors: Schreuder, H.A., Liesum, A.
PDB entry 8qq7: Structure of SpNOX: a Bacterial NADPH oxidase
Classification: ELECTRON TRANSPORT
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2023-10-04
Authors: Thepaut, M., Petit-Hartlein, I., Vermot, A., Chaptal, V., Humm, A.S., Dupeux, F., Marquez, J.A., Smith, S., Fieschi, F.
PDB entry 8qq8: Crystal Structure of F420-dependent Methylene-Tetrahydromethanopterin Reductase Mutant E6Q from Methanocaldococcus Jannaschii
Classification: OXIDOREDUCTASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-04
Authors: Gehl, M., Demmer, U., Ermler, U., Shima, S.
PDB entry 8qq9: human carbonic anhydrase I in complex with 1-benzyl-3-(1-hydroxy-3,4-dihydro-1H-benzo[c][1,2]oxaborinin-7-yl)thiourea
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-10-04
Authors: Angeli, A., Ferraroni, M.
PDB entry 8qqa: human carbonic anhydrase II in complex with Bithionol
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.346 Å
Deposited: 2023-10-04
Authors: Angeli, A., Ferraroni, M.
PDB entry 8qqb: Crystal structure of protein kinase CK2 catalytic subunit in complex with a Dibromo Dihydro Dibenzofuranone derivative
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2023-10-04
Authors: Werner, C., Niefind, K., Jose, J.
PDB entry 8qqc: Crystal structure of Lymantria dispar CPV14 polyhedra single crystal
Classification: VIRAL PROTEIN
Source organism: Lymantria dispar
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-10-04
Authors: Trincao, J., Warren, A., Crawshaw, A., Sutton, G., Stuart, D., Evans, G.
PDB entry 8qqd: CryoEM structure of the type IV pilin PilA4 from Thermus thermophilus
Classification: PROTEIN FIBRIL
Source organism: Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-10-04
Authors: Gold, V.A.M., Neuhaus, A., Gaines, M., Isupov, M., McLaren, M.
PDB entry 8qqe: Crystal structure of the complex between DMC1 and the PhePP domain of BRCA2
Classification: RECOMBINATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.461 Å
Deposited: 2023-10-04
Authors: Miron, S., Legrand, P., Zinn-Justin, S.
PDB entry 8qqf: TBC1D23 PH domain complexed with STX16 TLY motif
Classification: ENDOCYTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2023-10-04
Authors: Kaufman, J.G., Owen, D.J.
PDB entry 8qqg: Structure of BRAF in Complex With Exarafenib (KIN-2787).
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.979 Å
Deposited: 2023-10-04
Authors: Schmitt, A., Costanzi, E., Kania, R., Chen, Y.K.
PDB entry 8qqh: Structure of beta-galactosidase from Desulfurococcus amyloliticus
Classification: HYDROLASE
Source organism: Desulfurococcus amylolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-10-04
Authors: Samygina, V.R., Kil, Y., Sergeev, R.S., Rychkov, G.N.
PDB entry 8qqi: E.coli DNA gyrase in complex with 217 bp substrate DNA and LEI-800
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; Escherichia phage Mu
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-10-04
Authors: Ghilarov, D., Martin, N.I., van der Stelt, M.
PDB entry 8qqj: CryoEM structure of the type IV pilin PilA5 from Thermus thermophilus
Classification: PROTEIN FIBRIL
Source organism: Thermus thermophilus HB27
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-10-04
Authors: Gold, V.A.M., Neuhaus, A., Gaines, M., Isupov, M., McLaren, M.
PDB entry 8qqk: Cryo-EM structure of E. coli cytochrome bo3 quinol oxidase assembled in peptidiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-10-05
Authors: Gao, Y., Zhang, Y., Hakke, S., Peters, P.J., Ravelli, R.B.G.
PDB entry 8qql: Cryo-EM structure of the human inward-rectifier potassium 2.1 channel (Kir2.1) - R312H mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2023-10-05
Authors: Fernandes, C.A.H., Zuniga, D., Venien-Bryan, C.
PDB entry 8qqm: nicotinic acetylcholine receptor in intact synaptic membrane
Classification: MEMBRANE PROTEIN
Source organism: Tetronarce californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2023-10-05
Authors: Unwin, N.
PDB entry 8qqn: Portal protein of full Haloferax tailed virus 1.
Classification: VIRUS
Source organism: Haloferax tailed virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.342 Å
Deposited: 2023-10-05
Authors: Zhang, D., Daum, B., Isupov, M.N., McLaren, M.
PDB entry 8qqp: Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+GTP-bound form, super-compressed
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2023-10-06
Authors: Bulvas, O., Kouba, T., Pichova, I.
PDB entry 8qqq: Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+GTP-bound form, compressed
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2023-10-06
Authors: Bulvas, O., Kouba, T., Pichova, I.
PDB entry 8qqr: Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+ppGpp-bound form, super-compressed
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-10-06
Authors: Bulvas, O., Kouba, T., Pichova, I.
PDB entry 8qqs: E. coli DNA gyrase bound to a linear part of a DNA minicircle
Classification: ISOMERASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-10-06
Authors: Vayssieres, M., Lamour, V.
PDB entry 8qqt: Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+ppGpp-bound form, compressed
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-10-06
Authors: Bulvas, O., Kouba, T., Pichova, I.
PDB entry 8qqu: Asymetric subunit of E. coli DNA gyrase bound to a linear part of a DNA minicircle
Classification: ISOMERASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-10-06
Authors: Vayssieres, M., Lamour, V.
PDB entry 8qqv: Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+IMP-bound form, extended
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-10-06
Authors: Bulvas, O., Kouba, T., Pichova, I.
PDB entry 8qqw: Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP-bound form, compressed
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-10-06
Authors: Bulvas, O., Kouba, T., Pichova, I.
PDB entry 8qqx: Mycobacterium smegmatis inosine monophosphate dehydrogenase (IMPDH) ATP+IMP-bound form, half-extended
Classification: OXIDOREDUCTASE
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-10-06
Authors: Bulvas, O., Kouba, T., Pichova, I.