LiteFold/PDB huggingface dataset:
PDB entry 7vjh: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (5 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vji: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (10 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vjj: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (30 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vjk: class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (100 us time-point)
Classification: FLAVOPROTEIN
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-09-28
Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.-C., Nango, E., Ngura Putu, E.P.G., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Hosokawa, Y., Saft, M., Emmerich, H.-J., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Royant, A., Gad, W., Pang, A.H., Chang, C.-W., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
PDB entry 7vjl: The crystal structure of FGFR4 kinase domain in complex with N-(5-cyano-4-((2-methoxyethyl)amino)pyridin-2-yl)-7-(2,2,2-trifluoroacetyl)-3,4-dihydro-1,8-naphthyridine-1(2H)-carboxamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.90017 Å
Deposited: 2021-09-28
Authors: Zhang, Z.M., Wang, Y.J.
PDB entry 7vjm: Aca1 in complex with 19bp palindromic DNA substrate
Classification: TRANSCRIPTION/DNA
Source organism: Pseudomonas phage JBD30; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-09-28
Authors: Liu, Y.H., Zhang, L.S., Wu, B.X., Huang, H.D.
PDB entry 7vjn: Crystal structure of anti-CRISPR-associated protein Aca1 in Pseudomonas phage JBD30
Classification: TRANSCRIPTION
Source organism: Pseudomonas phage JBD30
Experimental method: X-RAY DIFFRACTION
Resolution: 1.799 Å
Deposited: 2021-09-28
Authors: Liu, Y.H., Zhang, L.S., Wu, B.X., Huang, H.D.
PDB entry 7vjo: Pectobacterium phage ZF40 apo-Aca2
Classification: TRANSCRIPTION
Source organism: Pectobacterium phage ZF40
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2021-09-28
Authors: Liu, Y.H., Zhang, L.S., Wu, B.X., Huang, H.D.
PDB entry 7vjp: Selenomethionine-derived Pectobacterium phage ZF40 apo-Aca2
Classification: TRANSCRIPTION
Source organism: Pectobacterium phage ZF40
Experimental method: X-RAY DIFFRACTION
Resolution: 1.594 Å
Deposited: 2021-09-28
Authors: Liu, Y.H., Zhang, L.S., Wu, B.X., Huang, H.D.
PDB entry 7vjq: Pectobacterium phage ZF40 apo-aca2 complexed with 26bp DNA substrate
Classification: TRANSCRIPTION/DNA
Source organism: Pectobacterium phage ZF40; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2021-09-28
Authors: Liu, Y.H., Zhang, L.S., Wu, B.X., Huang, H.D.
PDB entry 7vjs: Human AlkB homolog ALKBH6 in complex with Tris and Ni
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.792 Å
Deposited: 2021-09-28
Authors: Ma, L., Chen, Z.
PDB entry 7vjt: Crystal Structure of Mtb Pks13-TE in complex with inhibitor coumestan derivative 8
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2021-09-28
Authors: Zhang, W., Wang, S.S., Yu, L.F.
PDB entry 7vju: Crystal Structure of terephthalate dioxygenase from Comamonas testosteroni KF1
Classification: OXIDOREDUCTASE
Source organism: Comamonas testosteroni (strain DSM 14576 / KF-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2021-09-28
Authors: Mahto, J.K., Kumar, P.
PDB entry 7vjv: Human AlkB homolog ALKBH6 in complex with alpha-katoglutarate and Mn
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-09-29
Authors: Ma, L., Chen, Z.
PDB entry 7vjw: Crystal Structure of SARS-CoV-2 Mpro at 2.20 A resolution-10
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Ayan, E.
PDB entry 7vjx: Crystal Structure of SARS-CoV-2 Mpro at 2.20 A resolution-12
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Usta, G.
PDB entry 7vjy: Crystal Structure of Sars-Cov-2 Mpro at 1.90 A resolution-1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Johnson, A.J.
PDB entry 7vjz: Crystal Structure of SARS-CoV-2 Mpro at 1.90 A resolution-7
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Tokay, N.
PDB entry 7vk0: Crystal Structure of SARS-CoV-2 Mpro at 2.10 A resolution-6
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Cakilkaya, B.
PDB entry 7vk1: Crystal Structure of SARS-CoV-2 Mpro at 1.93 A resolution-5
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Ertem, B.
PDB entry 7vk2: Crystal Structure of SARS-CoV-2 Mpro at 2.0 A resolution -9
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Gul, M.
PDB entry 7vk3: Crystal Structure of SARS-CoV-2 Mpro at 2.10 A resolution-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Guven, O.
PDB entry 7vk4: Crystal Structure of SARS-CoV-2 Mpro at 2.10 A resolution-3
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Buyukdag, C.
PDB entry 7vk5: Crystal Structure of SARS-CoV-2 Mpro at 2.10 A resolution-8
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Gocenler, O.
PDB entry 7vk6: Crystal Structure of SARS-CoV-2 Mpro at 2.25 A resolution-13
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Yuksel, B.
PDB entry 7vk7: Crystal Structure of SARS-CoV-2 Mpro at 2.4 A resolution-11
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Dag, C.
PDB entry 7vk8: Crystal structure of SARS-CoV-2 Mpro at 2.4 A Resolution
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-09-29
Authors: DeMirci, H., Usta, G.
PDB entry 7vk9: Crystal structure of xCas9 P411T
Classification: RNA BINDING PROTEIN
Source organism: Streptococcus pyogenes serotype M1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-09-29
Authors: Bao, R., Liu, H.Y., Luo, Y.Z., Song, Y.J.
PDB entry 7vka: Crystal Structure of GH3.6 in complex with an inhibitor
Classification: LIGASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2021-09-29
Authors: Wang, N., Luo, M., Bao, H., Huang, H.
PDB entry 7vkb: Crystal structure of the a bacterial kinase complex
Classification: TOXIN/ANTITOXIN
Source organism: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2021-09-29
Authors: Zhen, X., Ouyang, S.Y.
PDB entry 7vkc: Crystal structure of a bacterial Ser/Thr kinase
Classification: TOXIN
Source organism: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2021-09-29
Authors: Zhen, X., Ouyang, S.Y.
PDB entry 7vkd: Reduced enzyme of FAD-dpendent Glucose Dehydrogenase at pH6.5
Classification: OXIDOREDUCTASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2021-09-29
Authors: Nakajima, Y., Nishiya, Y., Ito, K.
PDB entry 7vke: Crystal structure of human CD38 ECD in complex with UniDab(TM) F11A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-09-29
Authors: Schooten, W.V., Schellenberger, U., Ugamraj, H.S., Manicka, S., Bijpuria, S., Gondu, R.K.
PDB entry 7vkf: Reduced enzyme of FAD-dpendent Glucose Dehydrogenase complex with D-glucono-1,5-lactone at pH8.5
Classification: OXIDOREDUCTASE
Source organism: Aspergillus oryzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-09-29
Authors: Nakajima, Y., Nishiya, Y., Ito, K.
PDB entry 7vkg: Crystal structure of AF9 YEATS domain in complex with Compound 10
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-09-29
Authors: Liu, Y., Ruan, K.
PDB entry 7vkh: Crystal structure of AF9 YEATS domain in complex with hit 2
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-09-30
Authors: Liu, Y., Ruan, K.
PDB entry 7vki: ESRP1 qRRM2 in complex with 12mer-RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-09-30
Authors: Wu, B.X., Patel, D.J.
PDB entry 7vkj: Structure of ESRP1 qRRM3 domain
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-09-30
Authors: Wu, B.X., Patel, D.J.
PDB entry 7vkk: Crystal structure of D. melanogaster SAMTOR V66W/E67P mutant
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2021-09-30
Authors: Zhang, T., Ding, J.
PDB entry 7vkl: Crystal structure of MmIMP3-KH12 in complex with zipcode RNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-09-30
Authors: Li, X.J., Wu, B.X.
PDB entry 7vkm: Crystal structure of TrkA (G595R) kinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2021-09-30
Authors: Murray, B.W., Rogers, E., Zhai, D., Deng, W., Chen, X., Sprengeler, P.A., Zhang, X., Graber, A., Reich, S.H., Stopatschinskaja, S., Solomon, B., Besse, B., Drilon, A.
PDB entry 7vkn: Crystal structure of TrkA (G595R) kinase with repotrectinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-09-30
Authors: Murray, B.W., Rogers, E., Zhai, D., Deng, W., Chen, X., Sprengeler, P.A., Zhang, X., Graber, A., Reich, S.H., Stopatschinskaja, S., Solomon, B., Besse, B., Drilon, A.
PDB entry 7vko: Crystal structure of TrkA kinase with repotrectinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-09-30
Authors: Murray, B.W., Rogers, E., Zhai, D., Deng, W., Chen, X., Sprengeler, P.A., Zhang, X., Graber, A., Reich, S.H., Stopatschinskaja, S., Solomon, B., Besse, B., Drilon, A.
PDB entry 7vkp: Crystal structure of E.coli pseudouridine kinase PsuK
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli (strain B / BL21-DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-09-30
Authors: Li, K.J., Li, X.J., Wu, B.X.
PDB entry 7vkq: Crystal structure of D. melanogaster SAMTOR in the SAH bound form
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.094 Å
Deposited: 2021-09-30
Authors: Tang, X., Zhang, T., Ding, J.
PDB entry 7vkr: Crystal structure of D. melanogaster SAMTOR in complex with SAM
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-09-30
Authors: Tang, X., Zhang, T., Ding, J.
PDB entry 7vkt: cryo-EM structure of LTB4-bound BLT1 in complex with Gi protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-10-01
Authors: He, Y., Wang, N.
PDB entry 7vku: Cryo-EM structure of SAM-Tom40 intermediate complex
Classification: TRANSLOCASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-10-01
Authors: Takeda, H., Tsutsumi, A., Kikkawa, M., Endo, T.
PDB entry 7vkv: NMR structure of the zeta-subunit of the F1F0-ATPase from Sinorhizobium meliloti
Classification: PROTEIN BINDING
Source organism: Sinorhizobium meliloti 1021
Experimental method: SOLUTION NMR
Deposited: 2021-10-01
Authors: Yang, L.Y., Mendoza-Hoffmann, F., Buratto, D.
PDB entry 7vkw: The apo structure of beta-1,2-glucosyltransferase from Ignavibacterium album
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vkx: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with glucose
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vky: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with sophorose
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vkz: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with 1-Deoxynojirimycin
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl0: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with p-nitrophenyl-alpha-D-glucopyranoside
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl1: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with methyl alpha-D-glucoside
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl2: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with ethyl alpha-D-Glucoside
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl3: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with phenyl alpha-D-glucoside
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl4: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with methyl beta-D-glucoside
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl5: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with n-octyl-beta-D-glucoside
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl6: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with arbutin
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl7: The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with esculin
Classification: TRANSFERASE
Source organism: Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2021-10-01
Authors: Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.
PDB entry 7vl8: Cryo-EM structure of the Apo CCR1-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-10-02
Authors: Shao, Z., Shen, Q., Mao, C., Yao, B., Chen, L., Zhang, H., Shen, D., Zhang, C., Li, W., Du, X., Li, F., Ma, H., Chen, Z., Xu, H.E., Ying, S., Zhang, Y., Shen, H.
PDB entry 7vl9: Cryo-EM structure of the CCL15(26-92) bound CCR1-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-10-02
Authors: Shao, Z., Shen, Q., Mao, C., Yao, B., Chen, L., Zhang, H., Shen, D., Zhang, C., Li, W., Du, X., Li, F., Ma, H., Chen, Z., Xu, H.E., Ying, S., Zhang, Y., Shen, H.
PDB entry 7vla: Cryo-EM structure of the CCL15(27-92) bound CCR1-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-10-02
Authors: Shao, Z., Shen, Q., Mao, C., Yao, B., Chen, L., Zhang, H., Shen, D., Zhang, C., Li, W., Du, X., Li, F., Ma, H., Chen, Z., Xu, H.E., Ying, S., Zhang, Y., Shen, H.
PDB entry 7vlb: Crystal structure of UGT109A1 from Bacillus
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. spizizenii
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2021-10-02
Authors: Chen, L.Q., Zhang, Y.
PDB entry 7vlc: Oxy-deoxy intermediate of V2 hemoglobin at 78% oxygen saturation
Classification: OXYGEN TRANSPORT
Source organism: Lamellibrachia satsuma
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-10-02
Authors: Numoto, N., Onoda, S., Kawano, Y., Okumura, H., Baba, S., Fukumori, Y., Miki, K., Ito, N.
PDB entry 7vld: Oxy-deoxy intermediate of V2 hemoglobin at 69% oxygen saturation
Classification: OXYGEN TRANSPORT
Source organism: Lamellibrachia satsuma
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-10-02
Authors: Numoto, N., Onoda, S., Kawano, Y., Okumura, H., Baba, S., Fukumori, Y., Miki, K., Ito, N.
PDB entry 7vle: Oxy-deoxy intermediate of V2 hemoglobin at 55% oxygen saturation
Classification: OXYGEN TRANSPORT
Source organism: Lamellibrachia satsuma
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-10-02
Authors: Numoto, N., Onoda, S., Kawano, Y., Okumura, H., Baba, S., Fukumori, Y., Miki, K., Ito, N.
PDB entry 7vlf: Oxy-deoxy intermediate of V2 hemoglobin at 26% oxygen saturation
Classification: OXYGEN TRANSPORT
Source organism: Lamellibrachia satsuma
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-10-02
Authors: Numoto, N., Onoda, S., Kawano, Y., Okumura, H., Baba, S., Fukumori, Y., Miki, K., Ito, N.
PDB entry 7vlg: Crystal structure of Zika NS2B-NS3 protease with compound MI2201
Classification: VIRAL PROTEIN
Source organism: Zika virus; Zika virus (strain Mr 766)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.771 Å
Deposited: 2021-10-02
Authors: Quek, J.P.
PDB entry 7vlh: Crystal structure of Zika NS2B-NS3 protease with compound MI2219
Classification: VIRAL PROTEIN
Source organism: Zika virus; Zika virus (strain Mr 766)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.621 Å
Deposited: 2021-10-02
Authors: Quek, J.P.
PDB entry 7vli: Crystal structure of Zika NS2B-NS3 protease with compound MI2220
Classification: VIRAL PROTEIN
Source organism: Zika virus; Zika virus (strain Mr 766)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.385 Å
Deposited: 2021-10-02
Authors: Quek, J.P.
PDB entry 7vlj: Crystal structure of Entamoeba histolytica serine protease inhibitor, Histopin, in the cleaved conformation
Classification: HYDROLASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-10-03
Authors: Ali, M.F., Devi, S., Gourinath, S.
PDB entry 7vlk: eIF2B-SFSV NSs C2-imposed
Classification: TRANSLATION
Source organism: Homo sapiens; Sandfly fever sicilian virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2021-10-04
Authors: Kashiwagi, K., Ito, T.
PDB entry 7vlm: crystal structure of anti-CRISPR protein AcrIIA18
Classification: RNA BINDING PROTEIN
Source organism: Streptococcus macedonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2021-10-04
Authors: Zhang, H., Wang, X.S., Li, X.Z.
PDB entry 7vln: NSD2-PWWP1 domain bound with an imidazol-5-yl benzonitrile compound
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2021-10-05
Authors: Cao, D.Y., Li, Y.L., Li, J., Xiong, B.
PDB entry 7vlo: Crystal structure of SARS coronavirus main protease in complex with PF07321332
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.0227 Å
Deposited: 2021-10-05
Authors: Lin, C., Zhong, F.L., Zhou, X.L., Li, J., Zhang, J.
PDB entry 7vlp: Crystal structure of SARS-Cov-2 main protease in complex with PF07321332 in spacegroup P1211
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.50252 Å
Deposited: 2021-10-05
Authors: Zhou, X.L., Zhong, F.L., Lin, C., Li, J., Zhang, J.
PDB entry 7vlq: Crystal structure of SARS-Cov-2 main protease in complex with PF07321332 in spacegroup P212121
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93911 Å
Deposited: 2021-10-05
Authors: Zhou, X.L., Zhong, F.L., Lin, C., Zhang, J., Li, J.
PDB entry 7vlr: Structure of SUR2B in complex with Mg-ATP/ADP
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-10-05
Authors: Chen, L., Ding, D.
PDB entry 7vls: Structure of SUR2B in complex with MgATP/ADP and P1075
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-10-05
Authors: Chen, L., Ding, D.
PDB entry 7vlt: Structure of SUR2B in complex with Mg-ATP/ADP and levcromakalim
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-10-05
Authors: Chen, L., Ding, D.
PDB entry 7vlu: Structure of SUR2A in complex with Mg-ATP/ADP and P1075
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-10-05
Authors: Chen, L., Ding, D.
PDB entry 7vlx: Cryo-EM structures of Listeria monocytogenes man-PTS
Classification: MEMBRANE PROTEIN
Source organism: Listeria monocytogenes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2021-10-05
Authors: Wang, J.W.
PDB entry 7vly: Cryo-EM structure of Listeria monocytogenes man-PTS complexed with pediocin PA-1
Classification: MEMBRANE PROTEIN
Source organism: Listeria monocytogenes; Pediococcus acidilactici
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2021-10-05
Authors: Wang, J.W.
PDB entry 7vlz: Crystal structure of the collagenase unit of a Vibrio collagenase from Vibrio harveyi VHJR7
Classification: HYDROLASE
Source organism: Vibrio harveyi VHJR7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-10-05
Authors: Cao, H.Y., Wang, Y., Peng, M., Zhang, Y.Z.
PDB entry 7vm0: Crystal structure of YojK from B.subtilis in complex with UDP
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-10-06
Authors: Hou, X.D., Guo, B.D., Rao, Y.J.
PDB entry 7vm1: Crystal Structure of HasAp Capturing Iron Tetra(4-pyridyl)porphyrin
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa str. PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-10-06
Authors: Shisaka, Y., Ueda, G., Sakakibara, E., Sugimoto, H., Shoji, O.
PDB entry 7vm2: GluK3 D759G mutant receptor complex with UBP310 and spermine
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2021-10-06
Authors: Assaiya, A., Kumar, J.
PDB entry 7vm4: Crystal structure of uPA in complex with nafamostat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2021-10-07
Authors: Jiang, L.G., Huang, M.D.
PDB entry 7vm5: Crystal structure of uPA in complex with 4-guanidinobenzoic acid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-10-07
Authors: Jiang, L.G., Huang, M.D.
PDB entry 7vm6: Crystal structure of uPA in complex with 6-amidino-2-naphthol
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2021-10-07
Authors: Jiang, L.G., Huang, M.D.
PDB entry 7vm7: Crystal structure of inactive uPA in complex with nafamostat
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2021-10-07
Authors: Jiang, L.G., Huang, M.D.
PDB entry 7vm8: Crystal structure of the MtDMI1 gating ring
Classification: PLANT PROTEIN
Source organism: Medicago truncatula
Experimental method: X-RAY DIFFRACTION
Resolution: 3.034 Å
Deposited: 2021-10-08
Authors: Huang, X., Zhang, P.
PDB entry 7vm9: Solution NMR structures of DNA minidumbbell formed with two regular CTTTG pentaloops
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2021-10-08
Authors: Ngai, C.K., Guo, P.
PDB entry 7vma: The X-ray crystallographic structure of amylo-alpha-1,6-glucosidase from Thermococcus gammatolerans STB12
Classification: HYDROLASE
Source organism: Thermococcus gammatolerans EJ3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.804 Å
Deposited: 2021-10-08
Authors: Li, Z.F., Ban, X.F., Wang, Y.M., Li, C.M., Gu, Z.B.
PDB entry 7vmb: Crystal structure of IQSEC1-IQ motif, Sec7PH tandem in complex with calmodulin
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99777 Å
Deposited: 2021-10-08
Authors: Yang, W., Zhang, M.
PDB entry 7vmc: Crystal structure of EF-Tu/CdiA/CdiI
Classification: TOXIN
Source organism: Escherichia coli; Escherichia coli O157:H7 (strain EC869)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.413 Å
Deposited: 2021-10-08
Authors: Wang, J., Yashiro, Y., Tomita, K.
PDB entry 7vmd: Crystal structure of a hydrolases Ple628 from marine microbial consortium
Classification: HYDROLASE
Source organism: unclassified Marinobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2021-10-08
Authors: Wu, P., Zhao, Y.P., Li, Z.S., Ingrid, M.C., Lara, P., Gao, J., Han, X., Li, Q., Basak, O., Liu, W.D., Wei, R.
PDB entry 7vme: Crystal structure of a hydrolase in apo form 2
Classification: HYDROLASE
Source organism: unclassified Marinobacter
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2021-10-08
Authors: Wu, P., Zhao, Y.P., Li, Z.S., Ingrid, M.C., Lara, P., Gao, J., Han, X., Li, Q., Basak, O., Liu, W.D., Wei, R.
PDB entry 7vmf: Crystal structure of Arabidopsis thaliana HDT2
Classification: CHAPERONE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2021-10-08
Authors: Kumar, A., Bobde, R.C., Vasudevan, D.
PDB entry 7vmg: Crystal structure of tubulin with 17j
Classification: STRUCTURAL PROTEIN/INHIBITOR
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2021-10-08
Authors: Jifa, Z., Lun, T.
PDB entry 7vmh: Crystal structure of Arabidopsis thaliana HDT4
Classification: CHAPERONE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-10-08
Authors: Bobde, R.C., Kumar, A., Vasudevan, D.
PDB entry 7vmi: Crystal structure of Arabidopsis thaliana HDT3
Classification: CHAPERONE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-10-08
Authors: Bobde, R.C., Kumar, A., Vasudevan, D.
PDB entry 7vmj: Crystal structure of tubulin with 17a
Classification: STRUCTURAL PROTEIN/INHIBITOR
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-10-08
Authors: Jifa, Z., Lun, T.
PDB entry 7vmk: Crystal structure of tubulin with 3
Classification: STRUCTURAL PROTEIN/INHIBITOR
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-10-08
Authors: Jifa, Z., Lun, T.
PDB entry 7vml: Structure of recombinant RyR2 (EGTA dataset, class 1&2, closed state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-10-09
Authors: Kobayashi, T., Tsutsumi, A., Kurebayashi, N., Kodama, M., Kikkawa, M., Murayama, T., Ogawa, H.
PDB entry 7vmm: Structure of recombinant RyR2 (EGTA dataset, class 1, closed state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-10-09
Authors: Kobayashi, T., Tsutsumi, A., Kurebayashi, N., Kodama, M., Kikkawa, M., Murayama, T., Ogawa, H.
PDB entry 7vmn: Structure of recombinant RyR2 (EGTA dataset, class 2, closed state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-10-09
Authors: Kobayashi, T., Tsutsumi, A., Kurebayashi, N., Kodama, M., Kikkawa, M., Murayama, T., Ogawa, H.
PDB entry 7vmo: Structure of recombinant RyR2 (Ca2+ dataset, class 1, open state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-10-09
Authors: Kobayashi, T., Tsutsumi, A., Kurebayashi, N., Kodama, M., Kikkawa, M., Murayama, T., Ogawa, H.
PDB entry 7vmp: Structure of recombinant RyR2 (Ca2+ dataset, class 2, open state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-10-09
Authors: Kobayashi, T., Tsutsumi, A., Kurebayashi, N., Kodama, M., Kikkawa, M., Murayama, T., Ogawa, H.
PDB entry 7vmq: Structure of recombinant RyR2 (Ca2+ dataset, class 3, open state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-10-09
Authors: Kobayashi, T., Tsutsumi, A., Kurebayashi, N., Kodama, M., Kikkawa, M., Murayama, T., Ogawa, H.
PDB entry 7vmr: Structure of recombinant RyR2 mutant K4593A (EGTA dataset)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-10-09
Authors: Kobayashi, T., Tsutsumi, A., Kurebayashi, N., Kodama, M., Kikkawa, M., Murayama, T., Ogawa, H.
PDB entry 7vms: Structure of recombinant RyR2 mutant K4593A (Ca2+ dataset)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-10-09
Authors: Kobayashi, T., Tsutsumi, A., Kurebayashi, N., Kodama, M., Kikkawa, M., Murayama, T., Ogawa, H.
PDB entry 7vmt: Crystal structure of murine N-acetylglucosaminyl transferase IVa (GnT-IVa) lectin domain in unliganded form
Classification: SUGAR BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95001 Å
Deposited: 2021-10-09
Authors: Nagae, M.
PDB entry 7vmu: Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2021-10-09
Authors: Guo, Y., Wang, W., Jiao, P., Yang, H., Rao, Z., Cheng, G.
PDB entry 7vmv: Crystal structure of Dengue NS2B-NS3 Protease after secondary cleavage
Classification: VIRAL PROTEIN
Source organism: Dengue virus 4
Experimental method: X-RAY DIFFRACTION
Resolution: 3.351 Å
Deposited: 2021-10-09
Authors: Quek, J.P.
PDB entry 7vmw: Crystal structure of LimF prenyltransferase bound with a peptide substrate and GSPP
Classification: TRANSFERASE
Source organism: Limnothrix sp. CACIAM 69d; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-10-09
Authors: Hamada, K., Kobayashi, S., Okada, C., Zhang, Y., Inoue, S., Goto, Y., Suga, H., Ogata, K., Sengoku, T.
PDB entry 7vmx: The Crystal Structure of EF-Tu and EF-Ts complex from Mycobacterium tuberculosis
Classification: Elongation Factor
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-10-09
Authors: Zhan, B.W., Li, J.X.
PDB entry 7vmy: Crystal structure of LimF prenyltransferase bound with GSPP
Classification: TRANSFERASE
Source organism: Limnothrix sp. CACIAM 69d
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2021-10-09
Authors: Hamada, K., Kobayashi, S., Okada, C., Zhang, Y., Inoue, S., Goto, Y., Suga, H., Ogata, K., Sengoku, T.
PDB entry 7vmz: Crystal structure of a human Coronavirus 229E antibody C04 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2021-10-10
Authors: Xiang, J.C., Yang, B.
PDB entry 7vn0: CATPO mutant - T188A
Classification: OXIDOREDUCTASE
Source organism: Mycothermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-10-10
Authors: Yuzugullu Karakus, Y., Balci Unver, S., Zengin Karatas, M., Goc, G., Pearson, A.R., Yorke, B.
PDB entry 7vn2: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning ATCACGTGAT
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; Serratia sp. (strain FS14); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2021-10-10
Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
PDB entry 7vn3: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning CACACGTGTG
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; Serratia sp. (strain FS14); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2021-10-10
Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
PDB entry 7vn4: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TCCACGTGGA
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; Serratia sp. (strain FS14); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-10-10
Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
PDB entry 7vn5: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TTCACGTGAA
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; Serratia sp. (strain FS14); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-10-10
Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
PDB entry 7vn6: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning CGCACGTGCG
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; Serratia sp. (strain FS14); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2021-10-10
Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
PDB entry 7vn7: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning GACACGTGTC
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; Serratia sp. (strain FS14); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2021-10-10
Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
PDB entry 7vn8: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning GTCACGTGAC
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; Serratia sp. (strain FS14); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2021-10-10
Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
PDB entry 7vn9: Crystal structure of human coronavirus 229E spike protein receptor-binding domain in complex with C04 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human coronavirus 229E
Experimental method: X-RAY DIFFRACTION
Resolution: 4.49 Å
Deposited: 2021-10-10
Authors: Xiang, J.C., Yang, B.
PDB entry 7vna: drosophlia AHR PAS-B domain
Classification: TRANSCRIPTION
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.597 Å
Deposited: 2021-10-10
Authors: Dai, S.Y.
PDB entry 7vnb: Crystal structure of the SARS-CoV-2 RBD in complex with a human single domain antibody n3113
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2021-10-10
Authors: Yang, Z., Wang, Y., Kong, Y., Jin, Y., Wu, Y., Ying, T.
PDB entry 7vnc: Structure of the SARS-CoV-2 spike glycoprotein in complex with a human single domain antibody n3113 (UDD-state, state 1)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-10-10
Authors: Yang, Z., Wang, Y., Kong, Y., Jin, Y., Wu, Y., Ying, T.
PDB entry 7vnd: Structure of the SARS-CoV-2 spike glycoprotein in complex with a human single domain antibody n3113 (UUD-state, state 2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-10-10
Authors: Yang, Z., Wang, Y., Kong, Y., Jin, Y., Wu, Y., Ying, T.
PDB entry 7vne: Structure of the SARS-CoV-2 spike glycoprotein in complex with a human single domain antibody n3113.1 (UUU-state)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-10-10
Authors: Yang, Z., Wang, Y., Kong, Y., Jin, Y., Wu, Y., Ying, T.
PDB entry 7vng: Crystal structure of human coronavirus 229E spike protein receptor-binding domain in complex with S11 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human coronavirus 229E
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2021-10-11
Authors: Xiang, J.C., Zhao, W.W., Yang, B.
PDB entry 7vnh: drosophlia AHR PAS-B domain bound by the antagonist alpha-naphthoflavone
Classification: TRANSCRIPTION
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.402 Å
Deposited: 2021-10-11
Authors: Dai, S.Y.
PDB entry 7vni: AHR-ARNT PAS-B heterodimer
Classification: TRANSCRIPTION
Source organism: Drosophila melanogaster; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2021-10-11
Authors: Dai, S.Y.
PDB entry 7vnj: Complex structure of Clostridioides difficile enzymatic component (CDTa) and binding component (CDTb) pore with short stem
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2021-10-11
Authors: Yamada, T., Kawamoto, A., Yoshida, T., Sato, Y., Kato, T., Tsuge, H.
PDB entry 7vnl: Sandercyanin mutant-F55A-Biliverdin complex
Classification: FLUORESCENT PROTEIN
Source organism: Sander vitreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2021-10-11
Authors: Yadav, K., Ghosh, S., Subramanian, R.
PDB entry 7vnm: Rba sphaeroides PufY-KO RC-LH1 monomer
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides 2.4.1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2021-10-11
Authors: Bracun, L., Yamagata, A., Liu, L.N., Shirouzu, M.
PDB entry 7vnn: Complex structure of Clostridioides difficile enzymatic component (CDTa) and binding component (CDTb) pore with long stem
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2021-10-11
Authors: Yamada, T., Kawamoto, A., Yoshida, T., Sato, Y., Kato, T., Tsuge, H.
PDB entry 7vno: Structure of aminotransferase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-10-11
Authors: Sakuraba, H., Ohshida, T., Ohshima, T.
PDB entry 7vnp: Structure of human KCNQ4-ML213 complex with PIP2
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain B / BL21-DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2021-10-11
Authors: Xu, F., Zheng, Y.
PDB entry 7vnq: Structure of human KCNQ4-ML213 complex in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain B / BL21-DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2021-10-11
Authors: Xu, F., Zheng, Y.
PDB entry 7vnr: Structure of human KCNQ4-ML213 complex in digitonin
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain B / BL21-DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2021-10-11
Authors: Xu, F., Zheng, Y.
PDB entry 7vns: Sandercyanin mutant E79A-Biliverdin complex
Classification: FLUORESCENT PROTEIN
Source organism: Sander vitreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-10-12
Authors: Yadav, K., Ghosh, S., Subramanian, R.
PDB entry 7vnt: Structure of aminotransferase-substrate complex
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2021-10-12
Authors: Sakuraba, H., Ohshida, T., Ohshima, T.
PDB entry 7vnu: Crystal structure of the N-terminal domain of SARS-CoV-2 nucleocapsid protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-10-12
Authors: Zhou, R.J., Ni, X.C., Lei, J.
PDB entry 7vnv: Crystal Structure of tRNAVal from Sulfolobus Tokodaii
Classification: RNA
Source organism: Sulfurisphaera tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-10-12
Authors: Yamashita, S., Ohira, T., Suzuki, T., Tomtia, K.
PDB entry 7vnw: Crystal Structure of tRNAVal from Sulfolobus Tokodaii(Dephosphorylated)
Classification: RNA
Source organism: Sulfurisphaera tokodaii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2021-10-12
Authors: Yamashita, S., Ohira, T., Suzuki, T., Tomtia, K.
PDB entry 7vnx: Crystal structure of TkArkI
Classification: RNA BINDING PROTEIN
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2021-10-12
Authors: Yamashita, S., Minowa, K., Ohira, T., Suzuki, T., Tomita, K.
PDB entry 7vny: Rba sphaeroides WT RC-LH1 monomer
Classification: PHOTOSYNTHESIS
Source organism: Cereibacter sphaeroides 2.4.1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2021-10-12
Authors: Bracun, L., Yamagata, A., Liu, L.N., Shirouzu, M.