LiteFold/PDB huggingface dataset:
PDB entry 332d: CRYSTAL STRUCTURE OF R(GUGUGUA)D(C) WITH TANDEM G-U/U-G WOBBLE PAIRS WITH STRAND SLIPPAGE
Classification: DNA/RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 1997-05-14
Authors: Biswas, R., Sundaralingam, M.
PDB entry 333d: THE CRYSTAL STRUCTURE OF AN RNA OLIGOMER INCORPORATING TANDEM ADENOSINE-INOSINE MISMATCHES
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 1997-05-20
Authors: Carter, R.J., Baeyens, K.J., SantaLucia Jr., J., Turner, D.H., Holbrook, S.R.
PDB entry 334d: DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1997-05-22
Authors: Kopka, M.L., Goodsell, D.S., Dickerson, R.E.
PDB entry 335d: THE CRYSTAL STRUCTURE OF THE DNA DECAMER D(GGCAATTGCG) CONTAINS BOTH MAJOR AND MINOR GROOVE BINDING G.(G.C) TRIPLETS
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1997-06-05
Authors: Nunn, C.M., Neidle, S.
PDB entry 336d: INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 1997-06-24
Authors: Ohishi, H., Terasoma, N., Nakanishi, I., Van Der Marel, G., Van Boom, J.H., Rich, A., Wang, A.H.-J., Hakoshima, T., Tomita, K.-I.
PDB entry 337d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 1997-06-26
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 338d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 1997-06-26
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 339d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1997-06-26
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 340d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 1997-06-26
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 341d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 1997-06-26
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 342d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1997-06-26
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 343d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1997-06-26
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 344d: DETERMINATION BY MAD-DM OF THE STRUCTURE OF THE DNA DUPLEX D(ACGTACG(5-BRU))2 AT 1.46A AND 100K
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 1997-08-04
Authors: Todd, A.R., Adams, A., Powell, H.R., Cardin, C.J.
PDB entry 345d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 1997-08-15
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 346d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1997-08-26
Authors: Mooers, B.H.M., Eichman, B.F., Ho, P.S.
PDB entry 348d: X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: LOW SALT CONCENTRATION
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 1997-08-29
Authors: Luo, M., Finley, J.B.
PDB entry 349d: X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: HIGH SALT CONCENTRATION
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1997-08-29
Authors: Luo, M., Finley, J.B.
PDB entry 351c: STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 1981-07-20
Authors: Matsuura, Y., Takano, T., Dickerson, R.E.
PDB entry 351d: X-RAY CRYSTAL STRUCTURES OF THE HEXAMER DCACGCG: CRYSTALS GROWN IN THE PRESENCE OF RUTHENIUM (II) HEXAMMINE CHLORIDE
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 1997-08-30
Authors: Karthe, P., Gautham, N.
PDB entry 352d: THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 1997-09-04
Authors: Phillips, K., Dauter, Z., Murchie, A.I.H., Lilley, D.M.J., Luisi, B.
PDB entry 353d: CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1997-09-29
Authors: Betzel, C., Lorenz, S., Furste, J.P., Bald, R., Zhang, M., Schneider, T.R., Wilson, K.S., Erdmann, V.A.
PDB entry 354d: Structure of loop E FROM E. coli 5S RRNA
Classification: RNA
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 1997-10-01
Authors: Correll, C.C., Freeborn, B., Moore, P.B., Steitz, T.A.
PDB entry 355d: THE B-DNA DODECAMER AT HIGH RESOLUTION
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 1997-10-07
Authors: Hu, L.D., Shui, X., McFail-Isom, L., Williams, G.G.
PDB entry 357d: 3.5 A structure of fragment I from E. coli 5S RRNA
Classification: RNA
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 1997-10-09
Authors: Correll, C.C., Freeborn, B., Moore, P.B., Steitz, T.A.
PDB entry 358d: CRYSTAL STRUCTURE OF THE 2:1 NETROPSIN-DNA DECAMER D(CBRCCCCIIIII) COMPLEX WITH END-TO-END BINDING
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1997-10-20
Authors: Mitra, S.N., Chen, X., Sundaralingam, M.
PDB entry 359d: INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)
Classification: RIBOZYME
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 1997-10-27
Authors: Feig, A.L., Scott, W.G., Uhlenbeck, O.C.
PDB entry 35c8: CATALYTIC ANTIBODY 5C8, FAB-INHIBITOR COMPLEX
Classification: CATALYTIC ANTIBODY
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1998-03-18
Authors: Gruber, K., Wilson, I.A.
PDB entry 360d: STRUCTURE OF 2,5-BIS{[4-(N-ETHYLAMIDINO)PHENYL]}FURAN COMPLEXED TO 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'. A MINOR GROOVE DRUG COMPLEX, SHOWING PATTERNS OF GROOVE HYDRATION
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 1997-10-29
Authors: Guerri, A., Simpson, I.J., Neidle, S.
PDB entry 361d: CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1997-11-10
Authors: Perbandt, M., Nolte, A., Lorenz, S., Erdmann, V.A., Betzel, C.
PDB entry 362d: THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 1997-08-20
Authors: Harper, N.A., Brannigan, J.A., Buck, M., Lewis, R.J., Moore, M.H., Schneider, B.
PDB entry 363d: High-resolution crystal structure of a fully modified N3'-> P5' phosphoramidate DNA dodecamer duplex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1997-11-26
Authors: Tereshko, V., Gryaznov, S., Egli, M.
PDB entry 364d: 3.0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA
Classification: RNA
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1997-12-08
Authors: Correll, C.C., Freeborn, B., Moore, P.B., Steitz, T.A.
PDB entry 365d: STRUCTURAL BASIS FOR G C RECOGNITION IN THE DNA MINOR GROOVE
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1997-12-17
Authors: Kielkopf, C.L., Baird, E.E., Dervan, P.B., Rees, D.C.
PDB entry 366d: 1.3 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/6-BROMO-9-AMINO-DACA COMPLEX
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 1997-12-19
Authors: Todd, A.K., Adams, A., Thorpe, J.H., Denny, W.A., Cardin, C.J.
PDB entry 367d: 1.2 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/5-BROMO-9-AMINO-DACA COMPLEX
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 1997-12-19
Authors: Todd, A.K., Adams, A., Thorpe, J.H., Denny, W.A., Cardin, C.J.
PDB entry 368d: STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 1997-12-19
Authors: Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L., Malinina, L.
PDB entry 369d: STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1997-12-19
Authors: Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L.
PDB entry 370d: STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 1997-12-19
Authors: Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L.
PDB entry 371d: STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1997-12-19
Authors: Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L.
PDB entry 372d: STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 1997-12-19
Authors: Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L.
PDB entry 375d: A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1998-01-14
Authors: Chen, X., Rao, S.T., Sekar, K., Sundaralingam, M.
PDB entry 376d: A ZIPPER-LIKE DNA DUPLEX D(GCGAAAGCT)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1998-01-22
Authors: Cruse, W.B.T., Shepard, W., Prange, T., delalFortelle, E., Fourme, R.
PDB entry 377d: 5'-R(*CP*GP*UP*AP*CP*DG)-3'
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 1998-01-26
Authors: Biswas, R., Mitra, S.N., Sundaralingam, M.
PDB entry 378d: STRUCTURE OF THE SIDE-BY-SIDE BINDING OF DISTAMYCIN TO DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1998-01-28
Authors: Mitra, S.N., Wahl, M.C., Sundaralingam, M.
PDB entry 379d: THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE
Classification: RIBOZYME
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 1998-02-05
Authors: Murray, J.B., Terwey, D.P., Maloney, L., Karpeisky, A., Usman, N., Beigelman, L., Scott, W.G.
PDB entry 380d: BINDING OF THE MODIFIED DAUNORUBICIN WP401 ADJACENT TO A T-G BASE PAIR INDUCES THE REVERSE WATSON-CRICK CONFORMATION: CRYSTAL STRUCTURES OF THE WP401-TGGCCG AND WP401-CGG[BR5C]CG COMPLEXES
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1998-02-18
Authors: Dutta, R., Gao, Y.-G., Priebe, W., Wang, A.H.-J.
PDB entry 381d: BINDING OF THE MODIFIED DAUNORUBICIN WP401 ADJACENT TO A T-G BASE PAIR INDUCES THE REVERSE WATSON-CRICK CONFORMATION: CRYSTAL STRUCTURES OF THE WP401-TGGCCG AND WP401-CGG[BR5C]CG COMPLEXES
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 1998-02-18
Authors: Dutta, R., Gao, Y.-G., Priebe, W., Wang, A.H.-J.
PDB entry 382d: HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA.
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1998-03-02
Authors: Mayer-Jung, C., Moras, D., Timsit, Y.
PDB entry 383d: Hydration and recognition of methylated CPG steps in DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 1998-03-02
Authors: Mayer-Jung, C., Moras, D., Timsit, Y.
PDB entry 384d: HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 1998-03-02
Authors: Mayer-Jung, C., Moras, D., Timsit, Y.
PDB entry 385d: FORMATION OF A NEW COMPOUND IN THE CRYSTAL STRUCTURE OF CYANOMORPHOLINODOXORUBICIN COMPLEXED WITH D(CGATCG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 1998-03-05
Authors: Ettorre, A., Cirilli, M., Ughetto, G.
PDB entry 386d: THREE-DIMENSIONAL STRUCTURE AND REACTIVITY OF A PHOTOCHEMICAL CLEAVAGE AGENT BOUND TO DNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1998-03-11
Authors: Gasper, S.M., Armitage, B., Shui, X., Hu, G.G., Yu, C., Schuster, G., Williams, L.D.
PDB entry 387d: RNA Pseudoknot with 3D Domain Swapping
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 1998-04-14
Authors: Lietzke, S.E., Kundrot, C.E., Barnes, C.L.
PDB entry 388d: CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 1998-04-20
Authors: Berger, I., Tereshko, V., Ikeda, H., Marquez, V.E., Egli, M.
PDB entry 389d: CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 1998-04-20
Authors: Berger, I., Tereshko, V., Ikeda, H., Marquez, V.E., Egli, M.
PDB entry 390d: STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1998-04-20
Authors: Malinina, L., Tereshko, V., Ivanova, E., Subirana, J.A., Zarytova, V., Nekrasov, Y.
PDB entry 391d: STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 1998-04-20
Authors: Malinina, L., Tereshko, V., Ivanova, E., Subirana, J.A., Zarytova, V., Nekrasov, Y.
PDB entry 392d: STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1998-04-20
Authors: Malinina, L., Tereshko, V., Ivanova, E., Subirana, J.A., Zarytova, V., Nekrasov, Y.
PDB entry 393d: CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)
Classification: DNA/RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 1998-04-29
Authors: Ban, C., Sundaralingam, M., Ramakrishnan, B.
PDB entry 394d: CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1998-04-29
Authors: Ban, C., Sundaralingam, M.
PDB entry 395d: CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1998-04-29
Authors: Ban, C., Sundaralingam, M.
PDB entry 396d: CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1998-04-29
Authors: Ban, C., Sundaralingam, M.
PDB entry 397d: A 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS-ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION-DEPENDENT BULGE CONFORMATION
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 1998-04-30
Authors: Ippolito, J.A., Steitz, T.A.
PDB entry 398d: 3'-DNA-RNA-5' JUNCTION FORMED DURING INITIATION OF MINUS-STRAND SYNTHESIS OF HIV REPLICATION
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 1998-05-04
Authors: Mueller, U., Meier, G., Mochi-Onori, A., Cellai, L., Heumann, H.
PDB entry 399d: STRUCTURE OF D(CGCCCGCGGGCG)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1998-05-11
Authors: Malinina, L., Fernandez, L.G., Subirana, J.A.
PDB entry 3a01: Crystal structure of Aristaless and Clawless homeodomains bound to DNA
Classification: Gene Regulation/DNA
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-02-28
Authors: Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.
PDB entry 3a02: Crystal structure of Aristaless homeodomain
Classification: GENE REGULATION
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2009-02-28
Authors: Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.
PDB entry 3a03: Crystal structure of Hox11L1 homeodomain
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2009-02-28
Authors: Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.
PDB entry 3a04: Crystal structure of tryptophanyl-tRNA synthetase from hyperthermophilic archaeon, Aeropyrum pernix K1
Classification: LIGASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2009-03-02
Authors: Tsuchiya, W., Fujimoto, Z., Hasegawa, T.
PDB entry 3a05: Crystal structure of tryptophanyl-tRNA synthetase from hyperthermophilic archaeon, Aeropyrum pernix K1 complex with tryptophan
Classification: LIGASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-03-02
Authors: Tsuchiya, W., Fujimoto, Z., Hasegawa, T.
PDB entry 3a06: Crystal structure of DXR from Thermooga maritia, in complex with fosmidomycin and NADPH
Classification: OXIDOREDUCTASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-03-02
Authors: Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
PDB entry 3a07: Crystal Structure of Actinohivin; Potent anti-HIV Protein
Classification: ANTIVIRAL PROTEIN
Source organism: actinomycete
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2009-03-04
Authors: Tsunoda, M., Suzuki, K., Sagara, T., Takenaka, A.
PDB entry 3a08: Structure of (PPG)4-OOG-(PPG)4, monoclinic, twinned crystal
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2009-03-06
Authors: Okuyama, K., Morimoto, T., Wu, G., Noguchi, K., Mizuno, K., Bachinger, H.P.
PDB entry 3a09: Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with unsaturated trimannuronate
Classification: SUGAR BINDING PROTEIN
Source organism: Sphingomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-03-12
Authors: Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3a0a: Structure of (PPG)4-OPG-(PPG)4, monoclinic, twinned crystal
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2009-03-13
Authors: Okuyama, K., Morimoto, T., Hongo, C., Katagiri, A., Tanaka, Y., Nishino, N.
PDB entry 3a0b: Crystal structure of Br-substituted Photosystem II complex
Classification: ELECTRON TRANSPORT
Source organism: Thermosynechococcus vulcanus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2009-03-16
Authors: Kawakami, K., Umena, Y., Kamiya, N., Shen, J.-R.
PDB entry 3a0c: Crystal Structure of an anti-HIV mannose-binding lectin from Polygonatum cyrtonema Hua
Classification: SUGAR BINDING PROTEIN
Source organism: Polygonatum cyrtonema
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-03-16
Authors: Ding, J., Wang, D.C.
PDB entry 3a0d: Crystal Structure of Polygonatum cyrtonema lectin (PCL) complexed with monomannoside
Classification: SUGAR BINDING PROTEIN
Source organism: Polygonatum cyrtonema
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-03-16
Authors: Ding, J., Wang, D.C.
PDB entry 3a0e: Crystal Structure of Polygonatum cyrtonema lectin (PCL) complexed with dimannoside
Classification: SUGAR BINDING PROTEIN
Source organism: Polygonatum cyrtonema
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-03-16
Authors: Ding, J., Wang, D.C.
PDB entry 3a0f: The crystal structure of Geotrichum sp. M128 xyloglucanase
Classification: HYDROLASE
Source organism: Geotrichum sp. M128
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-03-16
Authors: Yaoi, K., Kondo, H., Hiyoshi, A., Noro, N., Sugimoto, H., Tsuda, S., Miyazaki, K.
PDB entry 3a0g: Crystal structure analysis of guinea pig oxyhemoglobin at 2.5 angstroms resolution
Classification: OXYGEN TRANSPORT
Source organism: Cavia porcellus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-03-17
Authors: Etti, S., Shanmugam, G., Karthe, P., Gunasekaran, K.
PDB entry 3a0h: Crystal structure of I-substituted Photosystem II complex
Classification: ELECTRON TRANSPORT
Source organism: Thermosynechococcus vulcanus
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2009-03-17
Authors: Kawakami, K., Umena, Y., Kamiya, N., Shen, J.-R.
PDB entry 3a0i: Human glucokinase in complex with a synthetic activator
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-03-19
Authors: Kamata, K., Mitsuya, M.
PDB entry 3a0j: Crystal structure of cold shock protein 1 from Thermus thermophilus HB8
Classification: TRANSCRIPTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2009-03-19
Authors: Miyazaki, T., Nakagawa, N., Kuramitsu, S., Masui, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3a0k: Crystal structure of an antiflamatory legume lectin from Cymbosema roseum seeds
Classification: SUGAR BINDING PROTEIN
Source organism: Cymbosema roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-03-20
Authors: Rocha, B.A.M., Delatorre, P., Marinho, E.S., Benevides, R.G., Moura, T.R., Souza, L.A.G., Nascimento, K.S., Sampaio, A.H., Cavada, B.S.
PDB entry 3a0m: Structure of (PPG)4-OVG-(PPG)4, monoclinic, twinned crystal
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2009-03-21
Authors: Okuyama, K., Morimoto, T., Mizuno, K., Bachinger, H.P.
PDB entry 3a0n: Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus
Classification: LYASE
Source organism: Chlorella virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2009-03-23
Authors: Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3a0o: Crystal structure of alginate lyase from Agrobacterium tumefaciens C58
Classification: LYASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2009-03-23
Authors: Ochiai, A., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
PDB entry 3a0r: Crystal structure of histidine kinase ThkA (TM1359) in complex with response regulator protein TrrA (TM1360)
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2009-03-24
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a0s: PAS domain of histidine kinase ThkA (TM1359)
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2009-03-24
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a0t: Catalytic domain of histidine kinase ThkA (TM1359) in complex with ADP and Mg ion (trigonal)
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2009-03-24
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a0u: Crystal structure of response regulator protein TrrA (TM1360) from Thermotoga maritima in complex with Mg(2+)-BeF (wild type)
Classification: SIGNALING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2009-03-24
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a0v: PAS domain of histidine kinase ThkA (TM1359) (SeMet, F486M/F489M)
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-03-24
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a0w: Catalytic domain of histidine kinase ThkA (TM1359) for MAD phasing (nucleotide free form 2, orthorombic)
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2009-03-24
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a0x: Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 1: ammomium phosphate, monoclinic)
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2009-03-25
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a0y: Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 3: 1,2-propanediol, orthorombic)
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2009-03-25
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a0z: Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 4: isopropanol, orthorombic)
Classification: TRANSFERASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-03-25
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a10: Crystal structure of response regulator protein TrrA (TM1360) from Thermotoga maritima in complex with Mg(2+)-BeF (SeMet, L89M)
Classification: SIGNALING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2009-03-25
Authors: Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
PDB entry 3a11: Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1
Classification: ISOMERASE
Source organism: Thermococcus kodakaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-03-25
Authors: Nakamura, A., Fujihashi, M., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
PDB entry 3a12: Crystal structure of Type III Rubisco complexed with 2-CABP
Classification: LYASE
Source organism: Pyrococcus kodakaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-03-25
Authors: Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
PDB entry 3a13: Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca
Classification: LYASE
Source organism: Pyrococcus kodakaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2009-03-25
Authors: Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
PDB entry 3a14: Crystal structure of DXR from Thermotoga maritima, in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-03-25
Authors: Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
PDB entry 3a15: Crystal Structure of Substrate-Free Form of Aldoxime Dehydratase (OxdRE)
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2009-03-26
Authors: Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
PDB entry 3a16: Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Propionaldoxime
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-03-26
Authors: Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
PDB entry 3a17: Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Butyraldoxime (Co-crystal)
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-03-26
Authors: Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
PDB entry 3a18: Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Butyraldoxime (soaked crystal)
Classification: LYASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-03-26
Authors: Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
PDB entry 3a19: Structure of (PPG)4-OOG-(PPG)4_H monoclinic, twinned crystal
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2009-03-28
Authors: Okuyama, K., Morimoto, T., Hyakutake, M., Wu, G., Mizuno, K., Bachinger, H.P.
PDB entry 3a1a: Crystal Structure of the DNMT3A ADD domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-03-28
Authors: Otani, J., Arita, K., Ariyoshi, M., Shirakawa, M.
PDB entry 3a1b: Crystal structure of the DNMT3A ADD domain in complex with histone H3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.292 Å
Deposited: 2009-03-28
Authors: Otani, J., Arita, K., Ariyoshi, M., Shirakawa, M.
PDB entry 3a1c: crystal structure of the P- and N-domains of CopA, a copper-transporting P-type ATPase, bound with AMPPCP-Mg
Classification: HYDROLASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-03-31
Authors: Tsuda, T., Toyoshima, C.
PDB entry 3a1d: Crystal structure of the P- and N-domains of CopA, a copper-transporting P-type ATPase, bound with ADP-Mg
Classification: HYDROLASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-03-31
Authors: Tsuda, T., Toyoshima, C.
PDB entry 3a1e: Crystal structure of the P- and N-domains of His462Gln mutant CopA, a copper-transporting P-type ATPase, bound with AMPPCP-Mg
Classification: HYDROLASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-03-31
Authors: Tsuda, T., Toyoshima, C.
PDB entry 3a1f: The crystal structure of NADPH binding domain of gp91(phox)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-04-01
Authors: Honbou, K.
PDB entry 3a1g: High-Resolution Crystal Structure of RNA polymerase PB1-PB2 subunits from Influenza A Virus
Classification: TRANSFERASE
Source organism: Influenza A virus (A/Puerto Rico/8/34(H1N1))
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-04-02
Authors: Sugiyama, K., Park, S.-Y., Obayashi, E.
PDB entry 3a1h: Crystal Structure Analysis of the Collagen-like Peptide, (PPG)4-OTG-(PPG)4
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2009-04-03
Authors: Okuyama, K., Miyama, K., Mizuno, K., Bachinger, H.P.
PDB entry 3a1i: Crystal structure of Rhodococcus sp. N-771 Amidase complexed with Benzamide
Classification: HYDROLASE
Source organism: Rhodococcus sp. N-771
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2009-04-03
Authors: Ohtaki, A., Noguchi, K., Sato, Y., Murata, K., Odaka, M., Yohda, M.
PDB entry 3a1j: Crystal structure of the human Rad9-Hus1-Rad1 complex
Classification: HYDROLASE/CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-04-08
Authors: Sohn, S.Y., Cho, Y.
PDB entry 3a1k: Crystal structure of Rhodococcus sp. N771 Amidase
Classification: HYDROLASE
Source organism: Rhodococcus sp. N-771
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2009-04-09
Authors: Ohtaki, A., Noguchi, K., Sato, Y., Murata, K., Odaka, M., Yohda, M.
PDB entry 3a1l: Crystal Structure of 11,11'-Dichlorochromopyrrolic Acid Bound Cytochrome P450 StaP (CYP245A1)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. TP-A0274
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-04-09
Authors: Makino, M., Sugimoto, H., Shiro, Y., Asamizu, S., Onaka, H., Nagano, S.
PDB entry 3a1m: A fusion protein of a beta helix region of gene product 5 and the foldon region of bacteriophage T4
Classification: STRUCTURAL PROTEIN
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-04-11
Authors: Yokoi, N., Suzuki, A., Hikage, T., Koshiyama, T., Terauchi, M., Yutani, K., Kanamaru, S., Arisaka, F., Yamane, T., Watanabe, Y., Ueno, T.
PDB entry 3a1n: Crystal structure of L-Threonine dehydrogenase from Hyperthermophilic Archaeon Thermoplasma volcanium
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2009-04-18
Authors: Yoneda, K., Sakuraba, H., Ohshima, T.
PDB entry 3a1p: Structure of Ribosome maturation protein RimM and Ribosomal protein S19
Classification: RIBOSOMAL PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-04-21
Authors: Kaminishi, T., Takemoto, C., Tatsuguchi, A., Kawazoe, M., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3a1q: Crystal structure of the mouse RAP80 UIMs in complex with Lys63-linked di-ubiquitin
Classification: GENE REGULATION/SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-04-21
Authors: Sato, Y., Yoshikawa, A., Mimura, H., Yamashita, M., Yamagata, A., Fukai, S.
PDB entry 3a1r: Neutron crystal structure analysis of bovine pancreatic ribonuclease A
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: NEUTRON DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-04-21
Authors: Yagi, D., Tanaka, I., Niimura, N.
PDB entry 3a1s: Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GDP form I
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-04-22
Authors: Hattori, M., Ishitani, R., Nureki, O.
PDB entry 3a1t: Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GDP form II
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-04-22
Authors: Hattori, M., Ishitani, R., Nureki, O.
PDB entry 3a1u: Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GMPPNP form
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-04-22
Authors: Hattori, M., Ishitani, R., Nureki, O.
PDB entry 3a1v: Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in apo form
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-04-22
Authors: Hattori, M., Ishitani, R., Nureki, O.
PDB entry 3a1w: Crystal structue of the G domain of T. maritima FeoB iron iransporter
Classification: TRANSPORT PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9001 Å
Deposited: 2009-04-22
Authors: Hattori, M., Ishitani, R., Nureki, O.
PDB entry 3a1y: The structure of archaeal ribosomal stalk P1/P0 complex
Classification: RIBOSOMAL PROTEIN
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2009-04-25
Authors: Naganuma, T., Yao, M., Nomura, N., Yu, J., Uchiumi, T., Tanaka, I.
PDB entry 3a1z: Crystal structure of juvenile hormone binding protein from silkworm
Classification: TRANSPORT PROTEIN
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2009-04-27
Authors: Suzuki, R., Fujimoto, Z., Shiotsuki, T., Momma, M., Tase, A., Yamazaki, T.
PDB entry 3a20: L122K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-04-27
Authors: Shibata, N., Higuchi, Y.
PDB entry 3a21: Crystal Structure of Streptomyces avermitilis beta-L-Arabinopyranosidase
Classification: HYDROLASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2009-04-27
Authors: Fujimoto, Z., Ichinose, H., Kaneko, S.
PDB entry 3a22: Crystal Structure of beta-L-Arabinopyranosidase complexed with L-arabinose
Classification: HYDROLASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-04-27
Authors: Fujimoto, Z., Ichinose, H., Kaneko, S.
PDB entry 3a23: Crystal Structure of beta-L-Arabinopyranosidase complexed with D-galactose
Classification: HYDROLASE
Source organism: Streptomyces avermitilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-04-27
Authors: Fujimoto, Z., Ichinose, H., Kaneko, S.
PDB entry 3a24: Crystal structure of BT1871 retaining glycosidase
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-04-28
Authors: Okuyama, M., Kitamura, M., Hondoh, H., Tanaka, I., Yao, M.
PDB entry 3a25: Crystal structure of P. horikoshii TYW2 in complex with AdoMet
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-04-28
Authors: Umitsu, M., Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 3a26: Crystal structure of P. horikoshii TYW2 in complex with MeSAdo
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-04-28
Authors: Umitsu, M., Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 3a27: Crystal structure of M. jannaschii TYW2 in complex with AdoMet
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.005 Å
Deposited: 2009-04-28
Authors: Umitsu, M., Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 3a28: Crystal structure of L-2,3-butanediol dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Brevibacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-05-02
Authors: Otagiri, M., Kurisu, G., Ui, S., Kusunoki, M.
PDB entry 3a29: Crystal structure of human liver FBPase in complex with tricyclic inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-05-08
Authors: Takahashi, M., Sone, J., Hanzawa, H.
PDB entry 3a2a: The structure of the carboxyl-terminal domain of the human voltage-gated proton channel Hv1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-05-08
Authors: Li, S.J., Unno, H., Zhou, Q., Zhao, Q., Zhai, Y., Sun, F.
PDB entry 3a2b: Crystal Structure of Serine Palmitoyltransferase from Sphingobacterium multivorum with substrate L-serine
Classification: TRANSFERASE
Source organism: Sphingobacterium multivorum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-05-09
Authors: Okamoto, A., Hoseki, J.
PDB entry 3a2c: Crystal structure of a pyrazolopyrimidine inhibitor complex bound to MAPKAP Kinase-2 (MK2)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-05-12
Authors: Fujino, A., Takimoto-Kamimura, M.
PDB entry 3a2e: Crystal structure of ginkbilobin-2, the novel antifungal protein from Ginkgo biloba seeds
Classification: PLANT PROTEIN
Source organism: Ginkgo biloba
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2009-05-13
Authors: Miyakawa, T., Miyazono, K., Sawano, Y., Hatano, K., Tanokura, M.
PDB entry 3a2f: Crystal Structure of Pyrococcus furiosus DNA polymerase/PCNA monomer mutant complex
Classification: TRANSFERASE/REPLICATION
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2009-05-15
Authors: Nishida, H., Ishino, Y., Morikawa, K.
PDB entry 3a2g: Crystal Structure of K102C-Myoglobin conjugated with Fluorescein
Classification: OXYGEN TRANSPORT
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-05-20
Authors: Koshiyama, T., Hikage, T., Ueno, T.
PDB entry 3a2h: Crystal structure of the rat vitamin D receptor ligand binding domain complexed with TEI-9647 and a synthetic peptide containing the NR2 box of DRIP 205
Classification: HORMONE RECEPTOR, TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-05-20
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3a2i: Crystal structure of the human vitamin D receptor (H305F) ligand binding domain complexed with TEI-9647
Classification: HORMONE RECEPTOR, TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.27 Å
Deposited: 2009-05-20
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3a2j: Crystal structure of the human vitamin D receptor (H305F/H397F) ligand binding domain complexed with TEI-9647
Classification: HORMONE RECEPTOR, TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-05-20
Authors: Kakuda, S., Takimoto-Kamimura, M.
PDB entry 3a2k: Crystal structure of TilS complexed with tRNA
Classification: LIGASE/RNA
Source organism: Geobacillus kaustophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.65 Å
Deposited: 2009-05-23
Authors: Nakanishi, K., Bonnefond, L., Ishitani, R., Nureki, O.
PDB entry 3a2l: Crystal structure of DBJA (mutant dbja delta)
Classification: HYDROLASE
Source organism: Bradyrhizobium japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2009-05-23
Authors: Sato, Y., Senda, T.
PDB entry 3a2m: CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)
Classification: HYDROLASE
Source organism: Bradyrhizobium japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2009-05-23
Authors: Sato, Y., Senda, T.
PDB entry 3a2n: Crystal structure of DBJA (Wild Type Type II P21)
Classification: HYDROLASE
Source organism: Bradyrhizobium japonicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2009-05-23
Authors: Sato, Y., Senda, T.
PDB entry 3a2o: Crystal Structure of HIV-1 Protease Complexed with KNI-1689
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 0.88 Å
Deposited: 2009-05-26
Authors: Adachi, M., Tamada, T., Hidaka, K., Kimura, T., Kiso, Y., Kuroki, R.
PDB entry 3a2p: Structure of 6-aminohexanoate cyclic dimer hydrolase
Classification: HYDROLASE
Source organism: Arthrobacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-05-26
Authors: Shibata, N.
PDB entry 3a2q: Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate
Classification: HYDROLASE
Source organism: Arthrobacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-05-26
Authors: Shibata, N.
PDB entry 3a2s: Crystal Structure of outer membrane protein PorB from Neisseria meningitidis in complex with sucrose
Classification: MEMBRANE PROTEIN
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-06-04
Authors: Tanabe, M., Iverson, T.M.
PDB entry 3a2v: Peroxiredoxin (C207S) from Aeropyrum pernix K1 complexed with hydrogen peroxide
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2009-06-04
Authors: Nakamura, T., Kado, Y., Yamaguchi, F., Ishikawa, K., Matsumura, H., Inoue, T.
PDB entry 3a2w: Peroxiredoxin (C50S) from Aeropytum pernix K1 (peroxide-bound form)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-06-04
Authors: Nakamura, T., Kado, Y., Yamaguchi, F., Matsumura, H., Ishikawa, K., Inoue, T.
PDB entry 3a2x: Peroxiredoxin (C50S) from Aeropyrum pernix K1 (acetate-bound form)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-06-04
Authors: Nakamura, T., Kado, Y., Yamaguchi, F., Matsumura, H., Ishikawa, K., Inoue, T.
PDB entry 3a2y: E. coli Gsp amidase C59A complexed with Gsp
Classification: Hydrolase, Ligase
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-06-04
Authors: Pai, C.-H., Ko, T.-P., Chiang, B.-Y., Lin, C.-H., Wang, A.H.-J.
PDB entry 3a2z: E. coli Gsp amidase Cys59 sulfenic acid
Classification: Hydrolase, Ligase
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-06-05
Authors: Pai, C.-H., Ko, T.-P., Chiang, B.-Y., Lin, C.-H., Wang, A.H.-J.
PDB entry 3a30: E. coli Gsp amidase C59 acetate modification
Classification: Hydrolase, Ligase
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-06-05
Authors: Pai, C.-H., Ko, T.-P., Chiang, B.-Y., Lin, C.-H., Wang, A.H.-J.
PDB entry 3a31: Crystal structure of putative threonyl-tRNA synthetase ThrRS-1 from Aeropyrum pernix (selenomethionine derivative)
Classification: LIGASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-06-07
Authors: Shimizu, S., Juan, E.C.M., Miyashita, Y., Sato, Y., Hoque, M.M., Suzuki, K., Yogiashi, M., Tsunoda, M., Dock-Bregeon, A.-C., Moras, D., Sekiguchi, T., Takenaka, A.
PDB entry 3a32: Crystal structure of putative threonyl-tRNA synthetase ThrRS-1 from Aeropyrum pernix
Classification: LIGASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-06-07
Authors: Shimizu, S., Juan, E.C.M., Miyashita, Y., Sato, Y., Hoque, M.M., Suzuki, K., Yogiashi, M., Tsunoda, M., Dock-Bregeon, A.-C., Moras, D., Sekiguchi, T., Takenaka, A.
PDB entry 3a33: UbcH5b~Ubiquitin Conjugate
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-06-08
Authors: Sakata, E., Satoh, T., Yamamoto, S., Yamaguchi, Y., Yagi-Utsumi, M., Kurimoto, E., Wakatsuki, S., Kato, K.