LiteFold/PDB huggingface dataset:
PDB entry 8pyn: Human IGF1R with inhibitor 56
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-07-25
Authors: Dreyer, M.K., Wang, J., Elkins, J.M.
PDB entry 8pyr: Crystal structure of the dual T-loop phosphorylated Cdk7/CycH/Mat1 complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Lama glama
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-07-26
Authors: Anand, K., Duster, R., Geyer, M.
PDB entry 8pys: Cryo-EM structure of the DyP peroxidase-loaded encapsulin nanocompartment from Mycobacterium tuberculosis with icosahedral symmetry imposed.
Classification: VIRUS LIKE PARTICLE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-07-26
Authors: Willmore, R., Woodward, J.D.
PDB entry 8pyv: Structure of Human PS-1 GSH-analog complex, solved at wavelength 2.755 A
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-07-26
Authors: Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Wagner, A., Vogeley, L., Brown, D.G.
PDB entry 8pyw: Crystal structure of the human Nucleoside-diphosphate kinase B domain bound to compound diphosphate form of AT-9052-Sp.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.553 Å
Deposited: 2023-07-26
Authors: Feracci, M., Chazot, A.
PDB entry 8pyx: Amide bond synthetase from Streptomyces hindustanus K492H mutant in complex with Adenosine
Classification: LIGASE
Source organism: Streptoalloteichus hindustanus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-07-26
Authors: Tang, Q., Grogan, G.
PDB entry 8pyy: Amide bond synthetase from Streptomyces hindustanus in open conformation
Classification: LIGASE
Source organism: Streptoalloteichus hindustanus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-07-26
Authors: Tang, Q., Grogan, G.
PDB entry 8pyz: Structure of Ompk36GD from Klebsiella pneumonia, solved at wavelength 4.13 A
Classification: MEMBRANE PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-07-26
Authors: Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Kwong, H., Beis, K., Wagner, A.
PDB entry 8pz0: Intracellular leucine aminopeptidase of Pseudomonas aeruginosa PA14.
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-26
Authors: Simpson, M.C., Czekster, C.M., Harding, C.J.
PDB entry 8pz1: Wait Complex: Lateral open BAM bound Compact SurA
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-07-26
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8pz2: Wait Complex: Lateral open BAM bound Extended SurA
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-07-26
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8pz3: TssM - A USP-like DUB from B. pseudomallei (193-430)
Classification: HYDROLASE
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-07-26
Authors: Uthoff, M., Hermanns, T., Hofmann, K., Baumann, U.
PDB entry 8pz4: Structure of alginate transporter, AlgE, solved at wavelength 2.755 A
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-07-26
Authors: Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Wagner, A., Vogeley, L., Brown, D.G.
PDB entry 8pz5: Structure of ThcOx, solved at wavelength 3.099 A
Classification: OXIDOREDUCTASE
Source organism: Cyanothece sp. PCC 7425
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-07-27
Authors: Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Wagner, A.
PDB entry 8pz6: crystal structure of VDR in complex with D-Bishomo-1a,25-dihydroxyvitamin D3 analog 56
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-07-27
Authors: Rochel, N.
PDB entry 8pz7: crystal structure of VDR complex with D-Bishomo-1a,25-dihydroxyvitamin D3 Analog 57
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.93 Å
Deposited: 2023-07-27
Authors: Rochel, N.
PDB entry 8pz8: crystal structure of VDR in complex with D-Bishomo-1a,25-dihydroxyvitamin D3 Analog 54
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2023-07-27
Authors: Rochel, N.
PDB entry 8pz9: Crystal structure of VDR in complex with D-Bishomo-1a,25-dihydroxyvitamin D3 Analog 55
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-07-27
Authors: Rochel, N.
PDB entry 8pzb: crystal structure of VDR in complex with D-Bishomo-1a,25-dihydroxyvitamin D3 Analog 49
Classification: TRANSCRIPTION
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-07-27
Authors: Rochel, N.
PDB entry 8pzg: Metagenomic lipase ORF17
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-07-27
Authors: Rangel Pereira, M., Balan, A., Hyvonen, M.
PDB entry 8pzh: LpdD (H61A) mutant
Classification: FLAVOPROTEIN
Source organism: Lactiplantibacillus plantarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-07-27
Authors: Gahloth, D., Leys, D.
PDB entry 8pzk: Crystal structure of the Orange Carotenoid Protein 2 (OCP2) from Gloeocapsa sp. PCC 7428
Classification: PHOTOSYNTHESIS
Source organism: Gloeocapsa sp. PCC 7428
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-27
Authors: Boyko, K.M., Varfolomeeva, L.A., Slonimskiy, Y.B., Maksimov, E.G., Popov, V.O., Sluchanko, N.N.
PDB entry 8pzm: Intracellular leucine aminopeptidase of Pseudomonas aeruginosa PA14 bound to bestatin inhibitor and manganese
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-07-27
Authors: Simpson, M.C., Czekster, C.M., Harding, C.J.
PDB entry 8pzo: LpdD
Classification: FLAVOPROTEIN
Source organism: Lactobacillus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-27
Authors: Gahloth, D., Leys, D.
PDB entry 8pzp: Model for influenza A virus helical ribonucleoprotein-like structure
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/WSN/1933(H1N1)); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.7 Å
Deposited: 2023-07-27
Authors: Chenavier, F., Estrozi, L.F., Zarkadas, E., Ruigrok, R.W.H., Schoehn, G., Ballandras-Colas, A., Crepin, T.
PDB entry 8pzq: Model for focused reconstruction of influenza A RNP-like particle
Classification: VIRAL PROTEIN
Source organism: Influenza A virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å
Deposited: 2023-07-27
Authors: Chenavier, F., Estrozi, L.F., Zarkadas, E., Ruigrok, R.W.H., Schoehn, G., Ballandras-Colas, A., Crepin, T.
PDB entry 8pzu: Wait Complex: BAM bound Darobactin-B and Compact SurA
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Photorhabdus heterorhabditis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-27
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8pzv: Wait Complex: BAM bound Darobactin-B and Extended SurA
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Photorhabdus heterorhabditis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-07-27
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8pzy: Intracellular leucine aminopeptidase of Pseudomonas aeruginosa PA14 - hexameric assembly with manganese bound
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-07-27
Authors: Simpson, M.C., Czekster, C.M., Harding, C.J.
PDB entry 8q00: TssM-Ub-PA complex - A USP-like DUB from B. pseudomallei (193-430) reacted with Ub-PA
Classification: HYDROLASE
Source organism: Burkholderia pseudomallei; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-07-27
Authors: Uthoff, M., Hermanns, T., Hofmann, K., Baumann, U.
PDB entry 8q01: Neck of phage 812 after tail contraction (C6)
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-07-27
Authors: Cienikova, Z., Siborova, M., Fuzik, T., Plevka, P.
PDB entry 8q03: Metagenomic lipase ORF30
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-07-27
Authors: Rangel Pereira, M., Balan, A., Hyvonen, M.
PDB entry 8q04: Chlorella sorokiniana Rubisco: D4 symmetry imposed
Classification: PLANT PROTEIN
Source organism: Chlorella sorokiniana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2023-07-27
Authors: Barrett, J., Blaza, J.N., Mackinder, L.C.M.
PDB entry 8q05: Chlorella sorokiniana Rubisco with CsLinker (alpha3-alpha4) bound: D4 symmetry expanded
Classification: PLANT PROTEIN
Source organism: Chlorella sorokiniana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-07-27
Authors: Barrett, J., Blaza, J.N., Mackinder, L.C.M.
PDB entry 8q06: EF-hand of MINDY3 Deubiquitylase in Complex with UBL of RAD23A
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-07-27
Authors: Armstrong, L.A., Kulathu, Y.
PDB entry 8q0a: Inward-facing, closed proteoliposome complex I at 3.1 A. Initially purified in DDM.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-28
Authors: Grba, D.N., Hirst, J.
PDB entry 8q0c: Human carbonic anhydrase II containing 3-fluorotyrosine
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-07-28
Authors: Pham, L.B.T., Costantino, A., Barbieri, L., Calderone, V., Luchinat, E., Banci, L.
PDB entry 8q0e: Crystal Structure of the N-terminal Domain of Variant Surface Glycoprotein 545 (VSG545) of Trypanosome brucei brucei Lister 427
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2023-07-28
Authors: van Straaten, M., Stebbins, C.E.
PDB entry 8q0f: Inward-facing, open2 proteoliposome complex I at 3.1 A. Initially purified in DDM.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-28
Authors: Grba, D.N., Hirst, J.
PDB entry 8q0g: Release Complex: BAM bound EspP and Compact SurA
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-07-28
Authors: Fenn, K.L., Ranson, N.A.
PDB entry 8q0j: Inward-facing, slack proteoliposome complex I at 3.8 A. Initially purified in DDM.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-07-28
Authors: Grba, D.N., Hirst, J.
PDB entry 8q0m: Outward-facing, closed proteoliposome complex I at 3.1 A. Initially purified in DDM.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-28
Authors: Grba, D.N., Hirst, J.
PDB entry 8q0n: HACE1 in complex with RAC1 Q61L
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-07-28
Authors: Wolter, M., Duering, J., Dienemann, C., Lorenz, S.
PDB entry 8q0o: Outward-facing, open2 proteoliposome complex I at 3.1 A. Initially purified in DDM.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-28
Authors: Grba, D.N., Hirst, J.
PDB entry 8q0p: Crystal Structure of an N-terminal Domain of Variant Surface Glycoprotein 21 (VSG21) of Trypanosome brucei brucei Lister 427
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-07-28
Authors: Zeelen, J.P., Stebbins, C.E.
PDB entry 8q0q: Outward-facing, slack proteoliposome complex I at 3.6 A. Initially purified in DDM
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-28
Authors: Grba, D.N., Hirst, J.
PDB entry 8q0r: X-ray structure of MNEI mutant Mut9 (E23A, C41A, Y65R, S76Y)
Classification: PLANT PROTEIN
Source organism: Dioscoreophyllum cumminsii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-07-29
Authors: Ferraro, G., Merlino, A., Lucignano, R., Picone, D.
PDB entry 8q0s: X-ray structure of the single chain monellin derivative MNEI
Classification: PLANT PROTEIN
Source organism: Dioscoreophyllum cumminsii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2023-07-29
Authors: Ferraro, G., Merlino, A., Lucignano, R., Picone, D.
PDB entry 8q0t: Identification and optimisation of novel inhibitors of the Polyketide synthetase 13 thioesterase domain with antitubercular activity
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-29
Authors: Eadsforth, T.C., Punekar, A.S., Green, S.R., Baragana, B.
PDB entry 8q0u: Identification and optimisation of novel inhibitors of the Polyketide synthetase 13 thioesterase domain with antitubercular activity
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-29
Authors: Eadsforth, T.C., Punekar, A.S., Green, S.R., Baragana, B.
PDB entry 8q0v: Endothiapepsin in complex with ligand (3R,5R)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)-5-(3-(4-(trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrrolidin-3-ol (CBWS-SE-073)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q0w: Endothiapepsin in complex with ligand (3R,5R)-3-(2-((allyl(methyl)amino)methyl)thiazol-4-yl)-5-(3-(4-(trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrrolidin-3-ol (CBWS-SE-086)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q0x: Endothiapepsin in complex with ligand (3R,5R)-3-(2-((methyl(propyl)amino)methyl)thiazol-4-yl)-5-(3-(4-(trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrrolidin-3-ol (CBWS-SE-087)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q0y: Endothiapepsin in complex with ligand (3R,5R)-5-(3-(4-bromophenyl)-1,2,4-oxadiazol-5-yl)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)pyrrolidin-3-ol (CBWS-SE-085.1)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q0z: Endothiapepsin in complex with ligand (3R,5R)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)-5-(3-phenyl-1,2,4-oxadiazol-5-yl)pyrrolidin-3-ol (CBWS-SE-089)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q10: Endothiapepsin in complex with ligand (3R,5R)-3-(2-(hydroxymethyl)thiazol-4-yl)-5-(3-(4-(trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrrolidin-3-ol (CBWS-SE-125)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q11: Endothiapepsin in complex with ligand (3R,5R)-5-(3-(4-fluorophenyl)-1,2,4-oxadiazol-5-yl)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)pyrrolidin-3-ol (CBWS-SE-126)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q12: Endothiapepsin in complex with ligand (3R,5R)-5-(3-(2-aminophenyl)-1,2,4-oxadiazol-5-yl)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)pyrrolidin-3-ol (CBWS-SE-146.2)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q13: Endothiapepsin in complex with ligand (3R,5R)-5-(3-(2-amino-4-(trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)pyrrolidin-3-ol (CBWS-SE-168)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q14: Endothiapepsin in complex with ligand (3R,5R)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)-5-(3-(2-nitro-4-(trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrrolidin-3-ol (CBWS-SE-171)
Classification: HYDROLASE
Source organism: Cryphonectria parasitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.13 Å
Deposited: 2023-07-29
Authors: Mueller, J.M., Eckelt, S., Klebe, G., Glinca, S.
PDB entry 8q15: CryoEM structure of canonical rice nucleosome core particle
Classification: DNA BINDING PROTEIN
Source organism: Oryza; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-30
Authors: Sotelo-Parrilla, P., Hari Sundar G, V., Raju, S., Jha, S., Gireesh, A., Gut, F., Vinothkumar, K.R., Berger, F., Shivaprasad, P.V., Jeyaprakash, A.A.
PDB entry 8q16: CryoEM structure of rice nucleosome containing a H4 variant chimera
Classification: DNA BINDING PROTEIN
Source organism: Oryza; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-30
Authors: Sotelo-Parrilla, P., Hari Sundar G, V., Raju, S., Jha, S., Gireesh, A., Gut, F., Vinothkumar, K.R., Berger, F., Shivaprasad, P.V., Jeyaprakash, A.A.
PDB entry 8q17: Identification and optimisation of novel inhibitors of the Polyketide synthetase 13 thioesterase domain with antitubercular activity
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-07-30
Authors: Eadsforth, T.C., Punekar, A.S., Green, S.R., Baragana, B.
PDB entry 8q18: The Crystal Structure of Human Carbonic Anhydrase IX in Complex with Sulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2023-07-31
Authors: Leitans, J., Tars, K.
PDB entry 8q19: The Crystal Structure of Human Carbonic Anhydrase IX in Complex with Sulfonamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2023-07-31
Authors: Leitans, J., Tars, K.
PDB entry 8q1a: The Crystal Structure of Human Carbonic Anhydrase IX in Complex with inhibitor
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-07-31
Authors: Leitans, J., Tars, K.
PDB entry 8q1b: III2-IV1 respiratory supercomplex from S. pombe
Classification: MEMBRANE PROTEIN
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-31
Authors: Moe, A., Brzezinski, P.
PDB entry 8q1c: Substrate-free D10N,P146A variant of beta-phosphoglucomutase from Lactococcus lactis
Classification: ISOMERASE
Source organism: Lactococcus lactis subsp. lactis Il1403
Experimental method: X-RAY DIFFRACTION
Resolution: 1.679 Å
Deposited: 2023-07-31
Authors: Cruz-Navarrete, F.A., Baxter, N.J., Flinders, A.J., Buzoianu, A., Cliff, M.J., Baker, P.J., Waltho, J.P.
PDB entry 8q1d: D10N variant of beta-phosphoglucomutase from Lactococcus lactis in complex with fructose 1,6-bisphosphate
Classification: ISOMERASE
Source organism: Lactococcus lactis subsp. lactis Il1403
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-07-31
Authors: Cruz-Navarrete, F.A., Baxter, N.J., Flinders, A.J., Buzoianu, A., Cliff, M.J., Baker, P.J., Waltho, J.P.
PDB entry 8q1e: D10N,P146A variant of beta-phosphoglucomutase from Lactococcus lactis in complex with fructose 1,6-bisphosphate
Classification: ISOMERASE
Source organism: Lactococcus lactis subsp. lactis Il1403
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-07-31
Authors: Cruz-Navarrete, F.A., Baxter, N.J., Flinders, A.J., Buzoianu, A., Cliff, M.J., Baker, P.J., Waltho, J.P.
PDB entry 8q1f: D10N,P146A variant of beta-phosphoglucomutase from Lactococcus lactis in complex with native beta-glucose 1,6-bisphosphate intermediate
Classification: ISOMERASE
Source organism: Lactococcus lactis subsp. lactis Il1403
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2023-07-31
Authors: Cruz-Navarrete, F.A., Baxter, N.J., Flinders, A.J., Buzoianu, A., Cliff, M.J., Baker, P.J., Waltho, J.P.
PDB entry 8q1g: LSD1-CoREST bound to Acetylated K14 of Histone H3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-31
Authors: Barone, M., Mattevi, A.
PDB entry 8q1h: LSD1 Y391K-CoREST bound to Histone H3 N-terminal tail
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-07-31
Authors: Barone, M., Mattevi, A.
PDB entry 8q1i: Neck-tail junction of phage 812 after tail contraction (C6)
Classification: VIRUS
Source organism: Staphylococcus phage 812
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2023-07-31
Authors: Cienikova, Z., Siborova, M., Fuzik, T., Plevka, P.
PDB entry 8q1j: LSD1 Y391K-CoREST bound to Acetylated K14 of Histone H3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2023-07-31
Authors: Barone, M., Mattevi, A.
PDB entry 8q1k: Structural analysis of PLD3 reveals insights into the mechanism of lysosomal 5' exonuclease-mediated nucleic acid degradation
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-07-31
Authors: Roske, Y., Daumke, O., Damme, M.
PDB entry 8q1l: NMR structure of arthrofactin A in micellar DPC solution
Classification: SURFACTANT PROTEIN
Source organism: Pseudomonas sp. MIS38
Experimental method: SOLUTION NMR
Deposited: 2023-07-31
Authors: Kovacs, B., Geudens, N., Martins, J.C.
PDB entry 8q1m: Aplysia californica acetylcholine-binding protein in complex with Spiroimine (+)-4 R
Classification: CHOLINE-BINDING PROTEIN
Source organism: Aplysia californica
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-31
Authors: Sulzenbacher, G., Bourne, Y., Marchot, P.
PDB entry 8q1n: Cyclic peptide binder of the WBM-site of WDR5
Classification: GENE REGULATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.843 Å
Deposited: 2023-08-01
Authors: Schmeing, S., Chang, J.Y., t Hart, P., Gasper, R.
PDB entry 8q1o: S-layer protein SlpA from Lactobacillus amylovorus, domain I (aa 32-209), important for Self-assembly
Classification: STRUCTURAL PROTEIN
Source organism: Lactobacillus amylovorus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.401 Å
Deposited: 2023-08-01
Authors: Sagmeister, T., Grininger, C., Eder, M., Pavkov-Keller, T.
PDB entry 8q1p: Inward-facing, open2 proteoliposome complex I at 2.9 A, after deactivation treatment. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-01
Authors: Grba, D.N., Hirst, J.
PDB entry 8q1q: mouse Keap1 in complex with stapled peptide
Classification: LIGASE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.378 Å
Deposited: 2023-08-01
Authors: Kack, H., Wissler, L.
PDB entry 8q1r: mouse Keap1 in complex with stapled peptide
Classification: LIGASE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2023-08-01
Authors: Kack, H., Wissler, L.
PDB entry 8q1s: Pathogenic mutations of human phosphorylation sites affect protein-protein interactions
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.23 Å
Deposited: 2023-08-01
Authors: Roske, Y., Daumke, O., Rrustemi, T., Selbach, M.
PDB entry 8q1u: Inward-facing, open1 proteoliposome complex I at 3.3 A, after deactivation treatment. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-01
Authors: Grba, D.N., Hirst, J.
PDB entry 8q1v: TtX183A - A c-type cytochrome domain from the Teredinibacter turnerae protein TERTU_2913
Classification: ELECTRON TRANSPORT
Source organism: Teredinibacter turnerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-08-01
Authors: Rajagopal, B.S., Hemsworth, G.R.
PDB entry 8q1w: TtX183B - A c-type cytochrome domain from the Teredinibacter turnerae protein TERTU_2913
Classification: ELECTRON TRANSPORT
Source organism: Teredinibacter turnerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-01
Authors: Rajagopal, B.S., Hemsworth, G.R.
PDB entry 8q1x: Structural analysis of PLD3 reveals insights into the mechanism of lysosomal 5' exonuclease-mediated nucleic acid degradation
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-01
Authors: Roske, Y., Daumke, O., Damme, M.
PDB entry 8q1y: Outward-facing, open2 proteoliposome complex I at 2.6 A, after deactivation treatment. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-08-01
Authors: Grba, D.N., Hirst, J.
PDB entry 8q1z: Crystal Structure of Human Vaccinia-related kinase 2 (VRK-2) bound to JA-296
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-01
Authors: Wang, G.Q., Amrhein, J.A., Knapp, S.
PDB entry 8q20: Crystal structure of Vanadium-dependent haloperoxidase R425D mutant (A. marina)
Classification: OXIDOREDUCTASE
Source organism: Acaryochloris marina
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-08-01
Authors: Zeides, P., Bellmannn-Sickert, K., Zhang, R., Seel, C.J., Most, V., Schroeder, C.T., Groll, M., Gulder, T.
PDB entry 8q21: Crystal structure of Vanadium-dependent haloperoxidase R425S mutant (A. marina)
Classification: OXIDOREDUCTASE
Source organism: Acaryochloris marina
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-08-01
Authors: Zeides, P., Bellmannn-Sickert, K., Zhang, R., Seel, C.J., Most, V., Schroeder, C.T., Groll, M., Gulder, T.
PDB entry 8q22: Crystal structure of Vanadium-dependent haloperoxidase R425S mutant in complex with 1,3,5-trimethoxybenzene (A. marina)
Classification: OXIDOREDUCTASE
Source organism: Acaryochloris marina
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-08-01
Authors: Zeides, P., Bellmannn-Sickert, K., Zhang, R., Seel, C.J., Most, V., Schroeder, C.T., Groll, M., Gulder, T.
PDB entry 8q23: HsNMT1 in complex with both MyrCoA and Ac-D-ORN-SFSKPR inhibitor peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-01
Authors: Dian, C., Giglione, C., Meinnel, T.
PDB entry 8q24: HsNMT1 in complex with both MyrCoA and (DAB)SFSKPR inhibitor peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-01
Authors: Dian, C., Giglione, C., Meinnel, T.
PDB entry 8q25: Outward-facing, open1 proteoliposome complex I at 2.8 A, after deactivation treatment. Initially purified in LMNG.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-01
Authors: Grba, D.N., Hirst, J.
PDB entry 8q26: HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-01
Authors: Dian, C., Giglione, C., Meinnel, T.
PDB entry 8q27: Tau: AD-MIA1
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.02 Å
Deposited: 2023-08-01
Authors: Lovestam, S., Scheres, S.H.W., Goedert, M., Li, D.
PDB entry 8q28: Se-Met labelled TtX122A - A domain of unknown function from the Teredinibacter turnerae protein TERTU_3803
Classification: UNKNOWN FUNCTION
Source organism: Teredinibacter turnerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-08-01
Authors: Rajagopal, B.S., Hemsworth, G.R.
PDB entry 8q29: TtX122A - A domain of unknown function from the Teredinibacter turnerae protein TERTU_3803
Classification: UNKNOWN FUNCTION
Source organism: Teredinibacter turnerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-08-01
Authors: Rajagopal, B.S., Hemsworth, G.R.
PDB entry 8q2a: TtX122B - A domain of unknown function from the Teredinibacter turnerae protein TERTU_2913
Classification: UNKNOWN FUNCTION
Source organism: Teredinibacter turnerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-01
Authors: Rajagopal, B.S., Hemsworth, G.R.
PDB entry 8q2b: E. coli Adenylate Kinase variant D158A (AK D158A) showing significant changes to the stacking of catalytic arginine side chains
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-08-01
Authors: Sauer, U.H., Wolf-Watz, M., Nam, K.
PDB entry 8q2c: Crystal structure of the E. coli PqiC Lipoprotein
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2023-08-02
Authors: Cooper, B.F., Ratkeviciute, G.R., Knowles, T.J.
PDB entry 8q2d: Crystal structure of the E. coli PqiC Lipoprotein residues 17-187
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-08-02
Authors: Cooper, B.F., Knowles, T.J.
PDB entry 8q2e: The 1.68-A X-ray crystal structure of Sporosarcina pasteurii urease inhibited by thiram and bound to dimethylditiocarbamate
Classification: HYDROLASE
Source organism: Sporosarcina pasteurii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-08-02
Authors: Mazzei, L., Cianci, M., Ciurli, S.
PDB entry 8q2f: Cytochrome P450 BM3 aMOx-A heme domain
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.43 Å
Deposited: 2023-08-02
Authors: Klaus, C., Kowal, J.L., Hammer, S.C., Niemann, H.H.
PDB entry 8q2g: X-ray structure of LysECD7 endolysin against Gram-negative bacteria
Classification: ANTIMICROBIAL PROTEIN
Source organism: Escherichia phage ECD7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-08-02
Authors: Prudnikova, T., Grinkevich, P., Vasina, D.V.
PDB entry 8q2h: beta-galactosidase from Bacillus circulans
Classification: HYDROLASE
Source organism: Niallia circulans subsp. circulans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-02
Authors: Kascakova, B., Hovorkova, M., Petraskova, L., Novacek, J., Pinkas, D., Gardian, Z., Kren, V., Bojarova, P., Kuta Smatanova, I.
PDB entry 8q2i: Crystal structure of Ser33 in complex 2HG (2-hydroxyglutarate) and Serine
Classification: CYTOSOLIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-08-02
Authors: Perrone, S., Cifuente, J.O., Marina, A., Mastrella, L., Trastoy, B., Linster, C.L., Guerin, M.E.
PDB entry 8q2j: Tau - AD-MIA2
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.23 Å
Deposited: 2023-08-02
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q2k: Tau - AD-MIA3
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-08-02
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q2l: Tau - AD-MIA4
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-08-02
Authors: Lovestam, S., Li, D., Scheres, S.H.W., Goedert, M.
PDB entry 8q2m: 18mer DNA mimic Foldamer with an Aliphatic linker in complex with Sac7d V26A/M29A protein
Classification: DNA BINDING PROTEIN
Source organism: Sulfolobus acidocaldarius; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2023-08-02
Authors: Deepak, D., Corvaglia, V., Wu, J., Huc, I.
PDB entry 8q2n: Cas1-Cas2 CRISPR integrase bound to prespacer and target DNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system
Classification: DNA BINDING PROTEIN
Source organism: Streptococcus thermophilus DGCC 7710; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-08-02
Authors: Sasnauskas, G., Gaizauskaite, U., Tamulaitiene, G.
PDB entry 8q2o: Structure of alginate transporter AlgE from P. aeruginosa PAO1 by using Se-MAG for the the lipid cubic phase crystallization
Classification: TRANSPORT PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-03
Authors: Huang, C.-Y., Boland, C., Kaki, S.S., Wang, M., Olieric, V., Caffrey, M.
PDB entry 8q2p: Structure of the membrane integral lipoprotein N-acyltransferase Lnt from E. coli by using Se-MAG for the the lipid cubic phase crystallization
Classification: TRANSFERASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-03
Authors: Huang, C.-Y., Boland, C., Kaki, S.S., Wang, M., Olieric, V., Caffrey, M.
PDB entry 8q2q: Crystal structure of YTHDC1 in complex with Compound 2b (YL_32)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Li, Y., Caflisch, A.
PDB entry 8q2r: Crystal structure of YTHDC1 in complex with Compound 3 (ZA_431)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Li, Y., Caflisch, A.
PDB entry 8q2s: Crystal structure of YTHDC1 in complex with Compound 4 (ZA_232)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q2t: Crystal structure of YTHDC1 in complex with Compound 5 (ZA_236)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q2u: Crystal structure of YTHDC1 in complex with Compound 6 (ZA_308)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q2v: Crystal structure of YTHDC1 in complex with Compound 7 (ZA_560)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q2w: Crystal structure of YTHDC1 in complex with Compound 8 (CS_01)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q2x: Crystal structure of YTHDC1 in complex with Compound 10 (ZA_294)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q2y: Crystal structure of YTHDC1 in complex with Compound 11 (ZA_572)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q2z: HsNMT1 in complex with both MyrCoA and GNLLSKFR peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-08-03
Authors: Dian, C., Giglione, C., Meinnel, T.
PDB entry 8q30: Sulfolobus acidocaldarius AAP filament.
Classification: PROTEIN FIBRIL
Source organism: Sulfolobus acidocaldarius
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-08-03
Authors: Isupov, M.N., Gaines, M., Daum, B., McLaren, M.
PDB entry 8q31: Crystal structure of YTHDC1 in complex with Compound 12 (ZA_341)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q32: Crystal structure of YTHDC1 in complex with Compound 13 (ZA_364)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q33: Crystal structure of YTHDC1 in complex with Compound 15 (ZA_343)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q34: Crystal structure of the first bromodomain of human BRD4 in complex with the ligand ZZ001229a
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2023-08-03
Authors: MacLean, E.M., Gao, Q., Williams, E., Balcomb, B.H., von Delft, F., Bajusz, D., Keeley, A., Abranyi-Balogh, P., Koekemoer, L., Keseru, G.M.
PDB entry 8q35: Crystal structure of YTHDC1 in complex with Compound 16 (ZA_354)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q36: Structure of Nucleosome Core with a Bound Metallopeptide Conjugate (Foamy Virus GAG Peptide-Au[I] Compound)
Classification: DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.604 Å
Deposited: 2023-08-03
Authors: De Falco, L., Batchelor, L.K., Dyson, P.J., Davey, C.A.
PDB entry 8q37: Crystal structure of YTHDC1 in complex with Compound 18 (ZA_312)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q38: Crystal structure of YTHDC1 in complex with Compound 19 (ZA_347)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q39: Crystal structure of YTHDC1 in complex with Compound 21 (ZA_515)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q3a: Crystal structure of YTHDC1 in complex with Compound 22 (ZA_393)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2023-08-03
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q3b: The closed state of the ASFV apo-RNA polymerase
Classification: TRANSCRIPTION
Source organism: African swine fever virus BA71V
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2023-08-03
Authors: Pilotto, S., Sykora, M., Cackett, G., Werner, F.
PDB entry 8q3c: Structure of Selenomonas ruminantium lactate dehydrogenase I85R mutant
Classification: OXIDOREDUCTASE
Source organism: Selenomonas ruminantium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-08-03
Authors: Bertrand, Q., Coquille, S., Iorio, A., Sterpone, F., Madern, D.
PDB entry 8q3d: HsNMT1 in complex with both MyrCoA and GNCFSKPR(NH2) inhibitor peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-08-04
Authors: Dian, C., Giglione, C., Meinnel, T.
PDB entry 8q3e: High Resolution Structure of Nucleosome Core with Bound Foamy Virus GAG Peptide
Classification: DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.174 Å
Deposited: 2023-08-04
Authors: De Falco, L., Batchelor, L.K., Dyson, P.J., Davey, C.A.
PDB entry 8q3f: Structural studies of human serum albumin using cryo-EM up to 0.38 nm resolution
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2023-08-04
Authors: Slawek, J., Taube, M., Rawski, M., Wojciechowska, D., Kozak, M.
PDB entry 8q3g: Crystal structure of YTHDC1 in complex with Compound 23 (ZA_385)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-08-04
Authors: Bedi, R.K., Zalesak, F., Caflisch, A.
PDB entry 8q3h: Capra hircus reactive intermediate deaminase A mutant - A108D
Classification: UNKNOWN FUNCTION
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-08-04
Authors: Rizzi, G., Visentin, C., Di Pisa, F., Ricagno, S.
PDB entry 8q3i: Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State I
Classification: TRANSCRIPTION
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-08-04
Authors: Koval, T., Krasny, L., Dohnalek, J., Kouba, T.
PDB entry 8q3j: Crystal structure of mIL-38 in complex with a neutralizing Fab e04 fragment
Classification: CYTOKINE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-04
Authors: Garcia-Pardo, J., Da Silva, P., Mora, J., Wiechmann, S., Putyrski, M., You, X., Kannt, A., Ernst, A., Brune, B., Weigert, A.
PDB entry 8q3k: The open state of the ASFV apo-RNA polymerase
Classification: TRANSCRIPTION
Source organism: African swine fever virus BA71V
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-08-04
Authors: Pilotto, S., Sykora, M., Cackett, G., Werner, F.
PDB entry 8q3l: Human Gamma-D Crystallin R36S fresh serial crystallographic structure
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-04
Authors: Yorke, B.A., Hill, J.A.
PDB entry 8q3m: Structure of Nucleosome Core with a Bound Kaposi Sarcoma Associated Herpesvirus LANA Peptide Having a Methionine to Ornithine Substitution
Classification: DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.503 Å
Deposited: 2023-08-04
Authors: De Falco, L., Batchelor, L.K., Dyson, P.J., Davey, C.A.
PDB entry 8q3n: Bacterial transcription termination factor Rho + ADP
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-08-04
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8q3o: Bacterial transcription termination factor Rho + pppGpp
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-08-04
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8q3p: Bacterial transcription termination factor Rho G150D mutant bound to ADP; C-terminal 8xHis-tag
Classification: TRANSCRIPTION
Source organism: Escherichia
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-08-04
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8q3q: Bacterial transcription termination factor Rho G152D mutant bound to ADP; C-terminal 8xHis-tag
Classification: TRANSCRIPTION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-04
Authors: Said, N., Hilal, T., Wahl, M.C.
PDB entry 8q3r: Cryo-EM structure of the DNA polymerase holoenzyme E9-A20-D4 of vaccinia virus
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus Copenhagen
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-08-04
Authors: Burmeister, W.P., Ballandras-Colas, A., Boettcher, B., Grimm, C.
PDB entry 8q3s: HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-08-04
Authors: Dian, C., Giglione, C., Meinnel, T.
PDB entry 8q3t: HsNMT1 in complex with both MyrCoA and GNCFSKPRVPTK inhibitor peptide
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-08-04
Authors: Dian, C., Giglione, C., Meinnel, T.
PDB entry 8q3u: Crystal structure of a fentanyl derivative in complex with human CA VII
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-08-04
Authors: Alterio, V., Di Fiore, A., De Simone, G.
PDB entry 8q3v: Cryo-EM structure of the methanogenic Na+ translocating N5-methyl-H4MPT:CoM methyltransferase complex
Classification: TRANSFERASE
Source organism: Methanothermobacter marburgensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2023-08-04
Authors: Aziz, I., Vonck, J., Ermler, U.
PDB entry 8q3w: ATP-bound IstB in complex to duplex DNA
Classification: DNA BINDING PROTEIN
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-08-04
Authors: de la Gandara, A., Spinola-Amilibia, M., Araujo-Bazan, L., Nunez-Ramirez, R., Berger, J.M., Arias-Palomo, E.
PDB entry 8q3x: Structure of Nucleosome Core with a Bound Metallopeptide Conjugate (Kaposi Sarcoma Associated Herpesvirus LANA Peptide-Au[I] Compound)
Classification: DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2023-08-04
Authors: De Falco, L., Batchelor, L.K., Dyson, P.J., Davey, C.A.