LiteFold/PDB huggingface dataset:
PDB entry 7yod: Crystal structure of A68P single mutant of O-acetylserine sulfhydrylase from Haemophilus influenzae in complex with high-affinity inhibitory peptide from serine acetyltransferase of Salmonella typhimurium at 2.1 A
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Haemophilus influenzae Rd KW20; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.101 Å
Deposited: 2022-08-01
Authors: Kumar, N., Rahisuddin, R., Saini, N., Singh, A.K.
PDB entry 7yoe: Crystal Structure of A68P single mutant of O-acetyl-L-serine sulfhydrylase from Haemophilus influenzae at 1.88 A
Classification: TRANSFERASE
Source organism: Haemophilus influenzae Rd KW20
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-08-01
Authors: Kumar, N., Rahisuddin, R., Saini, N., Singh, A.K.
PDB entry 7yof: Crystal Structure of Triple mutant (D67E, A68P, I88L) of O-acetyl-L-serine sulfhydrylase from Haemophilus influenzae at 2.3 A
Classification: TRANSFERASE
Source organism: Haemophilus influenzae Rd KW20
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-01
Authors: Kumar, N., Rahisuddin, R., Saini, N., Singh, A.K.
PDB entry 7yog: Crystal Structure of I88L single mutant of O-acetyl-L-serine sulfhydrylase from Haemophilus influenzae at 2.3 A
Classification: TRANSFERASE
Source organism: Haemophilus influenzae Rd KW20
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-01
Authors: Kumar, N., Rahisuddin, R., Saini, N., Singh, A.K.
PDB entry 7yoh: Crystal structure of I88L single mutant of O-acetylserine sulfhydrylase from Haemophilus influenzae in complex with high-affinity inhibitory peptide from serine acetyltransferase of Haemophilus influenzae at 2.5 A
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Haemophilus influenzae Rd KW20; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-01
Authors: Kumar, N., Rahisuddin, R., Saini, N., Singh, A.K.
PDB entry 7yoi: Crystal structure of I88L single mutant of O-acetylserine sulfhydrylase from Haemophilus influenzae in complex with high-affinity inhibitory peptide from serine acetyltransferase of Salmonella typhimurium at 2.14 A
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Haemophilus influenzae Rd KW20; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2022-08-01
Authors: Kumar, N., Rahisuddin, R., Saini, N., Singh, A.K.
PDB entry 7yoj: Structure of CasPi with guide RNA and target DNA
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Armatimonadetes bacterium; Armatimonadota bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-08-01
Authors: Li, C.P., Wang, J., Liu, J.J.
PDB entry 7yok: Crystal Structure of Tetra mutant (D67E, A68P, L98I, A301S) tetra mutant of O-acetyl-L-serine sulfhydrylase from Haemophilus influenzae at 2.8 A
Classification: TRANSFERASE
Source organism: Haemophilus influenzae Rd KW20
Experimental method: X-RAY DIFFRACTION
Resolution: 2.799 Å
Deposited: 2022-08-01
Authors: Saini, N., Kumar, N., Rahisuddin, R., Singh, A.K.
PDB entry 7yol: Crystal structure of tetra mutant (D67E, A68P, L98I, A301S) of O-acetylserine sulfhydrylase from Haemophilus influenzae in complex with high-affinity inhibitory peptide of serine acetyltransferase from Haemophilus influenzae at 2.4 A
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Haemophilus influenzae Rd KW20; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-08-01
Authors: Saini, N., Kumar, N., Rahisuddin, R., Singh, A.K.
PDB entry 7yom: Crystal structure of tetra mutant (D67E,A68P,L98I,A301S) of O-acetylserine sulfhydrylase from Salmonella typhimurium in complex with high-affinity inhibitory peptide from serine acetyltransferase of Salmonella typhimurium at 2.8 A
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Haemophilus influenzae Rd KW20; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-08-01
Authors: Saini, N., Kumar, N., Rahisuddin, R., Singh, A.K.
PDB entry 7yon: Complex structure of Neuropeptide Y Y2 receptor in complex with PYY(3-36) and Gi
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-08-01
Authors: Kang, H., Park, C., Kim, J., Choi, H.-J.
PDB entry 7yoo: Complex structure of Neuropeptide Y Y2 receptor in complex with NPY and Gi
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2022-08-01
Authors: Kang, H., Park, C., Kim, J., Choi, H.-J.
PDB entry 7yop: Spiroplasma melliferum FtsZ bound to GMPPNP
Classification: CELL CYCLE
Source organism: Spiroplasma melliferum KC3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.20003 Å
Deposited: 2022-08-01
Authors: Chakraborty, J., Pananghat, G.
PDB entry 7yoq: Recj2 and CMP complex from Methanocaldococcus jannaschii
Classification: DNA BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.265 Å
Deposited: 2022-08-02
Authors: Wang, W.W., Liu, X.P.
PDB entry 7yor: Recj2 and dCMP complex from Methanocaldococcus jannaschii
Classification: DNA BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2022-08-02
Authors: Wang, W.W., Liu, X.P.
PDB entry 7yos: Recj2 and Mn complex from Methanocaldococcus jannaschii
Classification: DNA BINDING PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-08-02
Authors: Wang, W.W., Liu, X.P.
PDB entry 7yot: Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Classification: VIRUS
Source organism: Avian orthoavulavirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-08-02
Authors: Chen, Y., Jingyuan, C.
PDB entry 7you: Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Classification: VIRUS
Source organism: Avian orthoavulavirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2022-08-02
Authors: Chen, Y., Jingyuan, C., Xiaoying, F.
PDB entry 7yov: Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Classification: VIRUS
Source organism: Avian orthoavulavirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-08-02
Authors: Chen, Y., Jingyuan, C., Xiaoying, F.
PDB entry 7yow: Crystal structure of SARS-CoV-2 omicron variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-08-02
Authors: Yamamoto, A., Higashiura, A.
PDB entry 7yox: Cryo-EM structure of the N-terminal domain of hMCM8/9 and HROB
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2022-08-02
Authors: Zheng, J.F., Weng, Z.F., Liu, Y.F.
PDB entry 7yoy: Cryo-EM structure of EBV gHgL-gp42 in complex with mAbs 3E8 and 5E3 (localized refinement)
Classification: VIRAL PROTEIN
Source organism: Human gammaherpesvirus 4; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2022-08-02
Authors: Liu, L., Sun, H., Jiang, Y., Hong, J., Zheng, Q., Li, S., Chen, Y., Xia, N.
PDB entry 7yoz: Cryo-EM structure of human subnucleosome (intermediate form)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-08-02
Authors: Nozawa, K., Takizawa, Y., Kurumizaka, H.
PDB entry 7yp0: Crystal structure of CtGST
Classification: TRANSFERASE
Source organism: Colletotrichum tofieldiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-02
Authors: Yang, J., Fan, J.P., Lei, X.G.
PDB entry 7yp1: Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 10E4 (localized refinement)
Classification: VIRAL PROTEIN
Source organism: Human gammaherpesvirus 4; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2022-08-02
Authors: Liu, L., Sun, H., Jiang, Y., Hong, J., Zheng, Q., Li, S., Chen, Y., Xia, N.
PDB entry 7yp2: Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 6H2 (localized refinement)
Classification: VIRAL PROTEIN
Source organism: Human gammaherpesvirus 4; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-08-02
Authors: Liu, L., Sun, H., Jiang, Y., Hong, J., Zheng, Q., Li, S., Chen, Y., Xia, N.
PDB entry 7yp3: Crystal structure of elaiophylin glycosyltransferase in complex with elaiophylin
Classification: TRANSFERASE
Source organism: Streptomyces sp. SCSIO 01934
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-02
Authors: Xu, T., Liu, Q., Gan, Q., Liu, J.
PDB entry 7yp4: Crystal structure of elaiophylin glycosyltransferase in apo-form
Classification: TRANSFERASE
Source organism: Streptomyces sp. SCSIO 01934
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-08-02
Authors: Xu, T., Liu, Q., Gan, Q., Liu, J.
PDB entry 7yp5: Crystal structure of elaiophylin glycosyltransferase in complex with TDP
Classification: TRANSFERASE
Source organism: Streptomyces sp. SCSIO 01934
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2022-08-02
Authors: Xu, T., Liu, Q., Gan, Q., Liu, J.
PDB entry 7yp6: Crystal structure of elaiophylin glycosyltransferase in complex with UDP
Classification: TRANSFERASE
Source organism: Streptomyces sp. SCSIO 01934
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-08-02
Authors: Xu, T., Liu, Q., Gan, Q., Liu, J.
PDB entry 7yp7: apo-ADGRG2 coupled to Gs
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-08-02
Authors: Liu, Z.M., Bu, R.Q., Xue, C.Y., Guo, S.C., Yuan, D.P., Xiao, P., Sun, J.P.
PDB entry 7yp8: Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Leucyl-sulfamoyl 3-deazaadenosine
Classification: LIGASE
Source organism: Neisseria gonorrhoeae (strain NCCP11945)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-02
Authors: Pang, L., De Graef, S., Strelkov, S.V., Weeks, S.D.
PDB entry 7yp9: Cryo-EM structure of Escherichia coli paused complex of transcription termination (TTC-pause)
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2022-08-03
Authors: You, L.L., Zhang, Y.
PDB entry 7ypa: Cryo-EM structure of Escherichia coli hairpin-nucleation complex of transcription termination (TTC-hairpin)
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2022-08-03
Authors: You, L.L., Zhang, Y.
PDB entry 7ypb: Cryo-EM structure of Escherichia coli release complex of transcription termination (TTC-release)
Classification: TRANSCRIPTION//DNA/RNA
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-08-03
Authors: You, L.L., Zhang, Y.
PDB entry 7ypc: Notothenia coriiceps TRAF4
Classification: IMMUNE SYSTEM
Source organism: Notothenia coriiceps
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2022-08-03
Authors: Park, H.H., Kim, C.M., Jang, H.S.
PDB entry 7ypd: Discovery and characterization of a new carbonyl reductase from Rhodotorula toluroides reducing fluoroketones, and X-ray analysis of the variant by rational engineering
Classification: OXIDOREDUCTASE
Source organism: Rhodotorula toruloides
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2022-08-03
Authors: Watanabe, Y., Asano, Y., Hibi, M.
PDB entry 7ype: Crystal structure of AsfvPCNA in space group of P63
Classification: DNA BINDING PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-08-03
Authors: Shao, Z.W., Gan, J.H.
PDB entry 7ypf: Crystal structure of AsfvPCNA in space group of P1
Classification: DNA BINDING PROTEIN
Source organism: African swine fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-03
Authors: Shao, Z.W., Gan, J.H.
PDB entry 7ypg: Cryo-EM structure of amyloid fibril formed by tau (297-391)
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-08-03
Authors: Zhang, S.Q., Li, X., Liu, C.
PDB entry 7yph: Open-spiral pentamer of the substrate-free Lon protease with a Y224S mutation
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2022-08-03
Authors: Li, S., Hsieh, K.Y., Kuo, C.I., Lee, S.H., Ho, M.R., Wang, C.H., Zhang, K., Chang, C.I.
PDB entry 7ypi: Spiral hexamer of the substrate-free Lon protease with a Y224S mutation
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-03
Authors: Li, S., Hsieh, K.Y., Kuo, C.I., Lee, S.H., Ho, M.R., Wang, C.H., Zhang, K., Chang, C.I.
PDB entry 7ypj: Spiral pentamer of the substrate-free Lon protease with a S678A mutation
Classification: HYDROLASE
Source organism: Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-03
Authors: Li, S., Hsieh, K.Y., Kuo, C.I., Lee, S.H., Ho, M.R., Wang, C.H., Zhang, K., Chang, C.I.
PDB entry 7ypk: Close-ring hexamer of the substrate-bound Lon protease with an S678A mutation
Classification: HYDROLASE
Source organism: Bos taurus; Meiothermus taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-03
Authors: Li, S., Hsieh, K.Y., Kuo, C.I., Lee, S.H., Ho, M.R., Wang, C.H., Zhang, K., Chang, C.I.
PDB entry 7ypl: Crystal structure of fibronectin type III domain variant, a VEGFR2-specific antagonist
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-08-03
Authors: Chang, Y.T., Chen, C.Y., Chuang, W.J.
PDB entry 7ypm: Crystal structure of transaminase CC1012 complexed with PLP and L-alanine
Classification: TRANSFERASE
Source organism: Caulobacter sp. D5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.984 Å
Deposited: 2022-08-03
Authors: Yang, L., Wang, H., Wei, D.
PDB entry 7ypn: Crystal structure of transaminase CC1012 mutant M9 complexed with PLP
Classification: TRANSFERASE
Source organism: Caulobacter sp. D5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.049 Å
Deposited: 2022-08-03
Authors: Yang, L., Wang, H., Wei, D.
PDB entry 7ypo: Cryo-EM structure of baculovirus LEF-3 in complex with ssDNA
Classification: DNA BINDING PROTEIN
Source organism: Helicoverpa armigera nucleopolyhedrovirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-04
Authors: Yin, J., Fu, Y., Rao, G., Li, Z., Cao, S.
PDB entry 7ypp: Structural basis of a superoxide dismutase from a tardigrade, Ramazzottius varieornatus strain YOKOZUNA-1.
Classification: OXIDOREDUCTASE
Source organism: Ramazzottius varieornatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-08-04
Authors: Sim, K.-S., Fukuda, Y., Inoue, T.
PDB entry 7ypq: Cryo-EM structure of one baculovirus LEF-3 molecule in complex with ssDNA
Classification: DNA BINDING PROTEIN
Source organism: Helicoverpa armigera nucleopolyhedrovirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-08-04
Authors: Fu, Y., Rao, G., Yin, J., Li, Z., Cao, S.
PDB entry 7ypr: Structural basis of a superoxide dismutase from a tardigrade, Ramazzottius varieornatus strain YOKOZUNA-1.
Classification: OXIDOREDUCTASE
Source organism: Ramazzottius varieornatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.101 Å
Deposited: 2022-08-04
Authors: Sim, K.-S., Fukuda, Y., Inoue, T.
PDB entry 7ypu: OrfE-CoA-glycylthricin complex
Classification: TRANSFERASE
Source organism: Streptomyces lavendulae subsp. lavendulae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.357 Å
Deposited: 2022-08-04
Authors: Wang, Y.L., Li, T.L.
PDB entry 7ypv: Crystal structure of OrE-ST-F
Classification: TRANSFERASE
Source organism: Streptomyces lavendulae subsp. lavendulae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.415 Å
Deposited: 2022-08-04
Authors: Wang, Y.L., Li, T.L.
PDB entry 7ypw: Lloviu cuevavirus nucleoprotein-RNA complex
Classification: VIRAL PROTEIN
Source organism: Lloviu cuevavirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.0356 Å
Deposited: 2022-08-04
Authors: Hu, S.F., Fujita-Fujiharu, Y., Sugita, Y., Wendt, L., Muramoto, Y., Nakano, M., Hoenen, T., Noda, T.
PDB entry 7ypx: Cyanophage Pam3 fiber
Classification: VIRAL PROTEIN
Source organism: uncultured cyanophage
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2022-08-04
Authors: Wei, Z.L., Jiang, Y.L., Zhou, C.Z.
PDB entry 7ypy: Bovine heart cytochrome c oxidase in fully oxidized state at 1.5 angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-08-05
Authors: Shimada, A., Tsukihara, T.
PDB entry 7ypz: Zafirlukast in complex with CRM1-Ran-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-08-05
Authors: Sun, Q., Lei, Y.
PDB entry 7yq0: Crystal structure of adenosine 5'-phosphosulfate kinase from Archaeoglobus fulgidus in complex with ADP
Classification: TRANSFERASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-08-05
Authors: Kawakami, T., Teramoto, T., Kakuta, Y.
PDB entry 7yq1: Crystal structure of adenosine 5'-phosphosulfate kinase from Archaeoglobus fulgidus in complex with AMP-PNP and APS
Classification: TRANSFERASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-08-05
Authors: Kawakami, T., Teramoto, T., Kakuta, Y.
PDB entry 7yq2: Crystal structure of photosystem II expressing psbA2 gene only
Classification: PHOTOSYNTHESIS,ELECTRON TRANSPORT
Source organism: Thermosynechococcus vestitus BP-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-08-05
Authors: Nakajima, Y., Suga, M., Shen, J.R.
PDB entry 7yq3: human insulin receptor bound with A43 DNA aptamer and insulin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-05
Authors: Kim, J., Yunn, N., Ryu, S., Cho, Y.
PDB entry 7yq4: human insulin receptor bound with A62 DNA aptamer and insulin - locally refined
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2022-08-05
Authors: Kim, J., Yunn, N., Ryu, S., Cho, Y.
PDB entry 7yq5: human insulin receptor bound with A62 DNA aptamer and insulin
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.27 Å
Deposited: 2022-08-05
Authors: Kim, J., Yunn, N., Ryu, S., Cho, Y.
PDB entry 7yq6: human insulin receptor bound with A62 DNA aptamer
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Deposited: 2022-08-05
Authors: Kim, J., Yunn, N., Ryu, S., Cho, Y.
PDB entry 7yq7: Crystal structure of photosystem II expressing psbA3 gene only
Classification: PHOTOSYNTHESIS,ELECTRON TRANSPORT
Source organism: Thermosynechococcus vestitus BP-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-08-05
Authors: Nakajima, Y., Suga, M., Shen, J.R.
PDB entry 7yq8: Cryo-EM structure of human topoisomerase II beta in complex with DNA and etoposide
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-08-05
Authors: Naganuma, M., Ehara, H., Kim, D., Nakagawa, R., Cong, A., Bu, H., Jeong, J., Jang, J., Schellenberg, M.J., Bunch, H., Sekine, S.
PDB entry 7yq9: Crystal structure of BRD4 bromodomain 1 (BD1) in complex with N-[2-(1H-indol-3-yl)ethyl]-3-(trifluoromethyl)[1,2,4]triazolo[4,3-b]pyridazin-6-amine
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-08-05
Authors: Kim, J.H., Lee, B.I.
PDB entry 7yqa: Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii
Classification: LYASE
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-08-05
Authors: Hirato, Y., Goto, M., Mizobuchi, T., Muramatsu, H., Tanigawa, M., Nishimura, K.
PDB entry 7yqb: Functional and Structural Characterization of Norovirus GII.6 in Recognizing Histo-blood Group Antigens
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.704 Å
Deposited: 2022-08-05
Authors: Cong, X., Duan, Z.J.
PDB entry 7yqc: EM structure of human PA28gamma
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2022-08-06
Authors: Chen, D.-D., Hao, J., Shen, C.-H., Yun, C.-H.
PDB entry 7yqd: EM structure of human PA28gamma (wild-type)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-06
Authors: Chen, D.-D., Hao, J., Yun, C.-H.
PDB entry 7yqe: Structure of human SRC regulatory domains in complex with the C-terminal PRRP motifs of GPR54.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-08-06
Authors: Song, G., Xu, S.
PDB entry 7yqf: Crystal structure of PDE4D complexed with glycyrrhisoflavone
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-08-06
Authors: Liu, J.Y., Li, M.J., Xu, Y.C.
PDB entry 7yqg: Functional and Structural Characterization of Norovirus GII.6 in Recognizing Histo-blood Group Antigens
Classification: VIRAL PROTEIN
Source organism: Norovirus GII
Experimental method: X-RAY DIFFRACTION
Resolution: 1.698 Å
Deposited: 2022-08-06
Authors: Duan, Z.J., Cong, X.
PDB entry 7yqh: Cryo-EM structure of 8-subunit Smc5/6
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2022-08-07
Authors: Qian, L., Jun, Z., Xiang, Z., Tong, C., Zhaoning, W., Duo, J., Zhenguo, C., Lanfeng, W.
PDB entry 7yqk: cryo-EM structure of gammaH2AXK15ub-H4K20me2 nucleosome bound to 53BP1
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2022-08-07
Authors: Ai, H.S., GuoChao, C., Qingyue, G., Ze-Bin, T., Zhiheng, D., Xin, L., Fan, Y., Ziyu, X., Jia-Bin, L., Changlin, T., Liu, L.
PDB entry 7yqm: 2.9-angstrom cryo-EM structure of Ecoli malate synthase G
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli DH5[alpha]
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2022-08-08
Authors: Wu, K.-P., Wu, Y.-M., Lu, Y.-C.
PDB entry 7yqn: Crystal structure of Ecoli malate synthase G
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli DH5[alpha]
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-08-08
Authors: Wu, K.-P., Lu, Y.-C., Ko, T.-P.
PDB entry 7yqo: Xcc Nicotinamide Phosphoribosyltransferase
Classification: TRANSFERASE
Source organism: Xanthomonas campestris pv. campestris str. 8004
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-08-08
Authors: Xu, G.L., Ming, Z.H.
PDB entry 7yqp: Xcc Nicotinamide Phosphoribosyltransferase
Classification: TRANSFERASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.088 Å
Deposited: 2022-08-08
Authors: Xu, G.L., Ming, Z.H.
PDB entry 7yqq: Crystal Structure of Xcc NAMPT and its complex with NMN
Classification: TRANSFERASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2022-08-08
Authors: Xu, G.L., Ming, Z.H.
PDB entry 7yqr: Crystal Structure of Xcc NAMPT and its complex with NAM
Classification: TRANSFERASE
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-08
Authors: Xu, G.L., Ming, Z.H.
PDB entry 7yqs: Neutron structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, L-Rha complex
Classification: LYASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2022-08-08
Authors: Yano, N., Kondo, T., Kusaka, K., Yamada, T., Arakawa, T., Sakamoto, T., Fushinobu, S.
PDB entry 7yqt: SARS-CoV-2 BA.2.75 S Trimer (1 RBD Up)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yqu: SARS-CoV-2 BA.2.75 S Trimer (3 RBD Down)
Classification: STRUCTURAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yqv: pH 5.5 SARS-CoV-2 BA.2.75 S Trimer (1 RBD Up)
Classification: STRUCTURAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yqw: SARS-CoV-2 BA.2.75 S Trimer (3 RBD Down)
Classification: STRUCTURAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yqx: SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state1)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yqy: SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state2)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yqz: SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yr0: SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (interface)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yr1: SARS-CoV-2 BA.2.75 S Trimer in complex with XG2v024
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yr2: SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state1)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yr3: SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yr4: SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(interface)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2022-08-08
Authors: Wang, L.
PDB entry 7yr5: Embigin facilitates monocarboxylate transporter 1 localization to plasma membrane and transition to a decoupling state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2022-08-08
Authors: Xu, B., Ye, S.
PDB entry 7yr6: Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with two RsmA protein dimers
Classification: RNA BINDING PROTEIN/RNA
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2022-08-09
Authors: Jia, X., Pan, Z., Yuan, Y., Luo, B., Luo, Y., Mukherjee, S., Jia, G., Ling, X., Yang, X., Wu, Y., Liu, T., Wei, X., Bujnick, J.M., Zhao, K., Su, Z.
PDB entry 7yr7: Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with three RsmA protein dimers
Classification: RNA BINDING PROTEIN/RNA
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-08-09
Authors: Jia, X., Pan, Z., Yuan, Y., Luo, B., Luo, Y., Mukherjee, S., Jia, G., Liu, L., Ling, X., Yang, X., Wu, Y., Liu, T., Miao, Z., Wei, X., Bujnicki, J.M., Zhao, K., Su, Z.
PDB entry 7yr8: Lloviu cuevavirus nucleoprotein(1-450 residues)-RNA complex
Classification: VIRAL PROTEIN
Source organism: Lloviu cuevavirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-09
Authors: Hu, S.F., Fujita-Fujiharu, Y., Sugita, Y., Wendt, L., Muramoto, Y., Nakano, M., Hoenen, T., Noda, T.
PDB entry 7yr9: Crystal structure of the immature form of TtPetA
Classification: ELECTRON TRANSPORT
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-08-09
Authors: Tsutsumi, E., Niwa, S., Takeda, K.
PDB entry 7yra: Crystal structure of [2Fe-2S]-TtPetA
Classification: ELECTRON TRANSPORT
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-08-09
Authors: Tsutsumi, E., Niwa, S., Takeda, K.
PDB entry 7yrb: UBR box of human UBR6
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2022-08-09
Authors: Kim, B., Song, H.K.
PDB entry 7yrd: histone methyltransferase
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-09
Authors: Li, H., Wang, W.Y.
PDB entry 7yre: Crystal structure of a bright green fluorescent protein (StayGold) with triple mutations (N137A, Q140S, Y187F) in jellyfish Cytaeis uchidae from Biortus
Classification: FLUORESCENT PROTEIN
Source organism: Cytaeis uchidae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-09
Authors: Wu, J., Wang, F., Gui, W., Cheng, W., Yang, Y.
PDB entry 7yrf: Cryo-EM structure of compact CA16 empty particle in complex with a neutralizing antibody 8C4
Classification: STRUCTURAL PROTEIN
Source organism: Coxsackievirus A16
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2022-08-09
Authors: Cong, Y., Liu, C.X.
PDB entry 7yrg: histone methyltransferase
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2022-08-09
Authors: Li, H., Wang, W.Y.
PDB entry 7yrh: Cryo-EM structure of compact coxsackievirus A16 empty particle in complex with a neutralizing antibody 9B5
Classification: STRUCTURAL PROTEIN
Source organism: Coxsackievirus A16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2022-08-10
Authors: Cong, Y., Liu, C.X.
PDB entry 7yri: S-adenosylmethionine sensor upstream of mTORC1
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2022-08-10
Authors: Zhang, H., Li, X.Z., Wen, Y.N.
PDB entry 7yrj: S-adenosylmethionine sensor upstream of mTORC1
Classification: TRANSFERASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-08-10
Authors: Zhang, H., Li, X.Z., Wen, Y.N.
PDB entry 7yrk: Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.92 Å
Deposited: 2022-08-10
Authors: Unno, M., Furuya, T., Kitanishi, K., Akitsu, T.
PDB entry 7yrn: Cyro-EM structure of HCMV glycoprotein B in complex with 1B03 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2022-08-10
Authors: Wang, H., Zhu, S., Liao, H.
PDB entry 7yro: Crystal structure of mango fucosyltransferase 13
Classification: TRANSFERASE
Source organism: Mangifera indica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-08-10
Authors: Okada, T., Teramoto, T., Ihara, H., Ikeda, Y., Kakuta, Y.
PDB entry 7yrp: Crystal structure of VIM-28 metallo-beta-lactamase
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-10
Authors: Shimizu-Ibuka, A., Sato, H.
PDB entry 7yrq: Cryo-EM structure of human Peroxisomal ABC Transporter ABCD1
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2022-08-10
Authors: Chao, X., Li-Na, J., Lin, T.
PDB entry 7yrr: Cryo-EM structure of IGF1R with two IGF1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-08-10
Authors: Xi, Z., Cang, W.
PDB entry 7yrs: Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with MOPS
Classification: ISOMERASE
Source organism: Lacticaseibacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.802 Å
Deposited: 2022-08-10
Authors: Yamamoto, Y., Oiki, S., Takase, R., Mikami, B., Hashimoto, W.
PDB entry 7yrt: Crystal structure of PAS like domain of FlrB, the histidine kinase involved in flagellar synthesis of Vibrio cholerae
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae O395
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2022-08-10
Authors: Dasgupta, J., Mukherjee, P.
PDB entry 7yru: ALK2 antibody complex
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-08-10
Authors: Kawaguchi, Y., Nakamura, K., Suzuki, M., Tsuji, S., Katagiri, T.
PDB entry 7yrv: Solution structures of a disulfide-directed multicyclic peptide with affinity for FGFR1
Classification: PEPTIDE BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-08-10
Authors: Fan, S.H., Wu, C.L.
PDB entry 7yrw: Solution structures of a disulfide-directed multicyclic peptide with affinity for HER2
Classification: PEPTIDE BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-08-10
Authors: Fan, S.H., Wu, C.L.
PDB entry 7yrx: Solution structures of a disulfide-directed multicyclic peptide with affinity for HER3
Classification: PEPTIDE BINDING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-08-11
Authors: Fan, S.H., Wu, C.L.
PDB entry 7yry: F1-ATPase of Acinetobacter baumannii
Classification: HYDROLASE
Source organism: Acinetobacter baumannii AB5075
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-08-11
Authors: Saw, W.-G., Grueber, G.
PDB entry 7yrz: Crystal structure of HCoV 229E main protease in complex with PF07321332
Classification: VIRAL PROTEIN
Source organism: Human coronavirus 229E
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-08-11
Authors: Zhou, Y.R., Zeng, P., Zhou, X.L., Lin, C., Zhang, J., Yin, X.S., Li, J.
PDB entry 7ys5: RET G-quadruplex in 10mM Na+
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-08-11
Authors: Yin, S., Cao, C.
PDB entry 7ys6: Cryo-EM structure of the Serotonin 6 (5-HT6) receptor-DNGs-scFv16 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-08-11
Authors: Zhao, Q.Y., Wang, Y.F., He, L., Wang, S., Cong, Y.
PDB entry 7ys7: RET oncogene primer G4-DNA in 100mMNa+
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-08-11
Authors: Yin, S., Cao, C.
PDB entry 7ys8: Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) from Mycobacterium tuberculosis
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-08-11
Authors: Yadav, S., Bhatia, I., Biswal, B.K.
PDB entry 7ys9: Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) in complex with both UDP-Glucose and UDP-Galactose in chainA from Mycobacterium tuberculosis
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-08-11
Authors: Yadav, S., Bhatia, I., Biswal, B.K.
PDB entry 7ysa: Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) in complex with UDP-glucose in chain A and UDP-galactose in chain B from Mycobacterium tuberculosis
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-08-11
Authors: Yadav, S., Bhatia, I., Biswal, B.K.
PDB entry 7yse: Crystal structure of E. coli heterotetrameric GlyRS in complex with tRNA
Classification: TRANSFERASE/RNA
Source organism: Escherichia coli; Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.907 Å
Deposited: 2022-08-12
Authors: Han, L., Ju, Y., Zhou, H.
PDB entry 7ysf: Crystal structure of ZNF524 ZF1-4 in complex with telomeric DNA
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-08-12
Authors: Li, F.D., Xu, Z.Y.
PDB entry 7ysg: Cryo-EM structure of human FcmR bound to sIgM
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-08-12
Authors: Li, Y., Shen, H., Xiao, J.
PDB entry 7ysh: Cryo-EM Structure of FGF23-FGFR1c-aKlotho-HS Quaternary Complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2022-08-12
Authors: Mohammadi, M., Chen, L.
PDB entry 7ysi: Crystal structure of thioredoxin 2
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.202 Å
Deposited: 2022-08-12
Authors: Chang, Y.J., Park, H.H.
PDB entry 7ysj: GluK1-1a in nanodisc captured in SYM2081 bound desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2022-08-12
Authors: Dhingra, S., Kumar, J.
PDB entry 7ysk: Crystal structure of D-Cysteine desulfhydrase from Pectobacterium atrosepticum
Classification: LYASE
Source organism: Pectobacterium atrosepticum SCRI1043
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-12
Authors: Zhang, X., Wang, L., Xu, X., Xing, X., Zhou, J.
PDB entry 7ysl: Crystal structure of D-Cysteine desulfhydrase with a trapped PLP-pyruvate geminal diamine
Classification: LYASE
Source organism: Pectobacterium atrosepticum SCRI1043
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-08-12
Authors: Zhang, X., Wang, L., Xu, X., Xing, X., Zhou, J.
PDB entry 7ysm: Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) co-crystallized with UDP-N-acetylglucosamine from Mycobacterium tuberculosis
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2022-08-12
Authors: Yadav, S., Bhatia, I., Biswal, B.K.
PDB entry 7ysn: Tubulin heterodimer structure of GMPCPP state in solution
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-12
Authors: Zhou, J., Wang, H.-W.
PDB entry 7yso: Tubulin heterodimer structure of GDP-1 state in solution
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-08-12
Authors: Zhou, J., Wang, H.-W.
PDB entry 7ysp: Tubulin heterodimer structure of GDP-2 state in solution
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-08-12
Authors: Zhou, J., Wang, H.-W.
PDB entry 7ysq: GTPgammaS Tube decorated with kinesin
Classification: PROTEIN FIBRIL
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2022-08-12
Authors: Zhou, J., Wang, H.-W.
PDB entry 7ysr: GTPgammaS MT decorated with kinesin
Classification: PROTEIN FIBRIL
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-08-12
Authors: Zhou, J., Wang, H.-W.
PDB entry 7yss: Novel salt-resistant antimicrobial peptide, RR14
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-08-13
Authors: Lin, T.L., Tseng, T.S., Fan, P.J.
PDB entry 7yst: Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) in complex with both UDP-glucose and UDP-galactose in chain B from Mycobacterium tuberculosis
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2022-08-13
Authors: Yadav, S., Bhatia, I., Biswal, B.K.
PDB entry 7ysu: Cryo-EM Structure of FGF23-FGFR3c-aKlotho-HS Quaternary Complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-13
Authors: Mohammadi, M., Chen, L.
PDB entry 7ysv: GluK1-1a extracellular domain captured in SYM2081 bound desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.01 Å
Deposited: 2022-08-13
Authors: Dhingra, S., Kumar, J.
PDB entry 7ysw: Cryo-EM Structure of FGF23-FGFR4-aKlotho-HS Quaternary Complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2022-08-13
Authors: Mohammadi, M., Chen, L.
PDB entry 7ysx: Crystal structure of PDE4D complexed with licoisoflavone A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-08-13
Authors: Liu, J.Y., Li, M.J., Xu, Y.C.
PDB entry 7ysy: Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) co-crystallized with UDP-N-acetylgalactosamine from Mycobacterium tuberculosis
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2022-08-13
Authors: Yadav, S., Bhatia, I., Biswal, B.K.
PDB entry 7ysz: Spiroplasma melliferum FtsZ bound to GDP
Classification: CELL CYCLE
Source organism: Spiroplasma melliferum KC3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.30004 Å
Deposited: 2022-08-13
Authors: Chakraborty, J., Pananghat, G.
PDB entry 7yt0: Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) in complex with UDP-galactose from Mycobacterium tuberculosis
Classification: ISOMERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2022-08-13
Authors: Yadav, S., Bhatia, I., Biswal, B.K.
PDB entry 7yt9: crystal structure of AGD1-4 of Arabidopsis AGDP3
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-08-13
Authors: Zhou, X., Du, J.
PDB entry 7yta: crystal structure of NtAGDP3 AGD1-2 in complex with an H3K9me2 peptide
Classification: GENE REGULATION
Source organism: Nicotiana tabacum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2022-08-13
Authors: Zhou, X., Du, J.
PDB entry 7ytb: Crystal structure of Kin4B8
Classification: MEMBRANE PROTEIN
Source organism: Bdellovibrio
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-08-14
Authors: Murakoshi, S., Chazan, A., Shihoya, W., Beja, O., Nureki, O.
PDB entry 7ytc: Cryo-EM structure of human FcmR bound to IgM-Fc/J
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2022-08-14
Authors: Li, Y., Shen, H., Xiao, J.
PDB entry 7ytd: Cryo-EM structure of four human FcmR bound to IgM-Fc/J
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2022-08-14
Authors: Li, Y., Shen, H., Xiao, J.
PDB entry 7yte: crystal structure of human FcmR-D1 bound to IgM C4-domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-08-14
Authors: Li, Y., Shen, H., Xiao, J.
PDB entry 7ytf: Structure of OCPx2 from Nostoc flagelliforme CCNUN1
Classification: PHOTOSYNTHESIS
Source organism: Nostoc flagelliforme CCNUN1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-08-14
Authors: Yang, Y.W., Chen, S.Z., Liu, K., Chen, M., Qiu, B.S.
PDB entry 7yth: Structure of OCPx1 from Nostoc flagelliforme CCNUN1
Classification: PHOTOSYNTHESIS
Source organism: Nostoc flagelliforme CCNUN1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2022-08-14
Authors: Yang, Y.W., Liu, K., Chen, S.Z., Chen, M., Qiu, B.S.
PDB entry 7ytj: Cryo-EM structure of VTC complex
Classification: TRANSPORT PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-08-15
Authors: Guan, Z.Y., Chen, J., Liu, R.W., Chen, Y.K., Xing, Q., Du, Z.M., Liu, Z.
PDB entry 7ytl: Structure of a oxidoreductase in complex with quinone
Classification: OXIDOREDUCTASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2022-08-15
Authors: Lv, Y., Sun, Q., Wang, Q., Zhu, D.
PDB entry 7ytn: Crystal structure of SARS-CoV-2 Alpha RBD in complex with the D27LEY neutralizing antibody Fab fragment
Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2022-08-15
Authors: Jeong, B.S., Jeon, J.Y., Oh, B.H.
PDB entry 7yto: The Crystal Structure Analysis of Creatine Amidinohydrolase from Alcaligenes sp. KS-85
Classification: HYDROLASE
Source organism: Alcaligenes sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2022-08-15
Authors: Chen, R.S.
PDB entry 7ytp: TLR7 in complex with an inhibitor
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-08-15
Authors: Zhang, Z., Ohto, U., Shimizu, T.
PDB entry 7ytq: Human langerin carbohydrate recognition domain in complex with an alpha-mannoside ligand
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens; unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-08-16
Authors: Wangkanont, K.