LiteFold/PDB huggingface dataset:
PDB entry 2dou: probable N-succinyldiaminopimelate aminotransferase (TTHA0342) from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-05-03
Authors: Omi, R., Goto, M., Miyahara, I., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dp3: Crystal structure of a double mutant (C202A/A198V) of Triosephosphate isomerase from giardia lamblia
Classification: ISOMERASE
Source organism: Giardia intestinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-05-05
Authors: Diaz, A., Reyes-Vivas, H., Lopez-Velazquez, G.
PDB entry 2dp4: Crystal structure of the complex formed between proteinase K and a human lactoferrin fragment at 2.9 A resolution
Classification: HYDROLASE
Source organism: Engyodontium album; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-05-05
Authors: Singh, A.K., Singh, N., Sharma, S., Bhushan, A., Singh, T.P.
PDB entry 2dp5: Structure of streptococcus pyogenes bacteriophage-associated hyaluronate lyase Hylp2
Classification: LYASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2006-05-06
Authors: Mishra, P., Bhakuni, V., Prem Kumar, R., Singh, N., Sharma, S., Kaur, P., Singh, T.P.
PDB entry 2dp6: Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA
Classification: HYDROLASE/DNA
Source organism: Thermus thermophilus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-05-07
Authors: Kosaka, H., Nakagawa, N., Masui, R., Kuramitsu, S., Hoseki, J., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dp7: Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2006-05-08
Authors: Juan, E.C.M., Kondo, J., Kurihara, T., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 2dp8: Carbohydrate recognition by lactoferrin: Crystal structure of the complex of C-terminal lobe of bovine lactoferrin with trisaccharide at 2.5 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-05-08
Authors: Singh, N., Sharma, S., Singh, T.P.
PDB entry 2dp9: Crystal Structure of Conserved Hypothetical Protein TTHA0113 from Thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-05-08
Authors: Agari, Y., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dpb: Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-05-08
Authors: Juan, E.C.M., Kondo, J., Kurihara, T., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 2dpc: Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2006-05-08
Authors: Juan, E.C.M., Kondo, J., Kurihara, T., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 2dpd: Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site
Classification: DNA BINDING PROTEIN/DNA
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2006-05-09
Authors: Vivian, J.P., Wilce, J., Wilce, M.C.J.
PDB entry 2dpe: Crystal structure of a secretory 40KDA glycoprotein from sheep at 2.0A resolution
Classification: SIGNALING PROTEIN
Source organism: Ovis aries
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2006-05-11
Authors: Srivastava, D.B., Ethayathulla, A.S., Kumar, J., Singh, N., Sharma, S., Das, U., Srinivasan, A., Singh, T.P.
PDB entry 2dpf: Crystal Structure of curculin1 homodimer
Classification: PLANT PROTEIN
Source organism: Curculigo latifolia
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-05-11
Authors: Kurimoto, E., Suzuki, M., Amemiya, E., Yamaguchi, Y., Nirasawa, S., Shimba, N., Xu, N., Kashiwagi, T., Kawai, M., Suzuki, E., Kato, K.
PDB entry 2dpg: COMPLEX OF INACTIVE MUTANT (H240->N) OF GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC MESENTEROIDES WITH NADP+
Classification: OXIDOREDUCTASE
Source organism: Leuconostoc mesenteroides
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1998-04-17
Authors: Adams, M.J., Naylor, C.E., Paludin, S., Gover, S.
PDB entry 2dph: Crystal Structure of Formaldehyde dismutase
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2006-05-11
Authors: Hasegawa, T., Yamano, A., Yanase, H.
PDB entry 2dpi: Ternary complex of hPoli with DNA and dCTP
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-05-12
Authors: Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.
PDB entry 2dpj: structure of hPoli with DNA and dTTP
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-05-12
Authors: Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.
PDB entry 2dpk: The Crystal Structure of the Primary Ca2+ Sensor of the Na+/Ca2+ Exchanger
Classification: METAL TRANSPORT
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-05-12
Authors: Abramson, J., Sawaya, M.
PDB entry 2dpl: Crystal Structure of the GMP synthase from Pyrococcus horikoshii OT3
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2006-05-12
Authors: Asada, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dpm: DPNM DNA ADENINE METHYLTRANSFERASE FROM STREPTOCCOCUS PNEUMONIAE COMPLEXED WITH S-ADENOSYLMETHIONINE
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1998-09-03
Authors: Tran, P.H., Korszun, Z.R., Cerritelli, S., Springhorn, S.S., Lacks, S.A.
PDB entry 2dpn: Crystal Structure of the glycerol kinase from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-05-12
Authors: Asada, Y., Sugahara, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dpp: Crystal structure of thermostable Bacillus sp. RAPc8 nitrile hydratase
Classification: LYASE
Source organism: Bacillus sp. RAPc8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2006-05-12
Authors: Tsekoa, T.L., Tastan-Bishop, A.O., Cameron, R.A., Sewell, B.T., Sayed, M.F., Cowan, D.A.
PDB entry 2dpq: The crystal structures of the calcium-bound con-G and con-T(K7gamma) dimeric peptides demonstrate a novel metal-dependent helix-forming motif
Classification: METAL BINDING PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2006-05-13
Authors: Cnudde, S.E., Prorok, M., Dai, Q., Castellino, F.J., Geiger, J.H.
PDB entry 2dpr: The crystal structures of the calcium-bound con-G and con-T(K7Glu) dimeric peptides demonstrate a novel metal-dependent helix-forming motif
Classification: METAL BINDING PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-05-13
Authors: Cnudde, S.E., Prorok, M., Dai, Q., Castellino, F.J., Geiger, J.H.
PDB entry 2dps: Structure of Leucyl/phenylalanyl-tRNA-protein transferase
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-05-14
Authors: Suto, K., Shimizu, Y., Tomita, K.
PDB entry 2dpt: Leucyl/phenylalanyl-tRNA-protein transferase complexed with puromycin
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2006-05-14
Authors: Suto, K., Shimizu, Y., Tomita, K.
PDB entry 2dpu: Crystal structure of the replication termination protein in complex with a pseudosymmetric 21mer B-site DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2006-05-15
Authors: Vivian, J.P., Wilce, J., Wilce, M.C.J.
PDB entry 2dpw: Hpothetical Transferase Structure from Thermus thermophilus
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-05-17
Authors: Rehse, P.H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dpx: Crystal Structure of human Rad GTPase
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-05-18
Authors: Yanuar, A., Sakurai, S., Kitano, K., Hakoshima, T.
PDB entry 2dpy: Crystal structure of the flagellar type III ATPase FliI
Classification: HYDROLASE
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2006-05-18
Authors: Imada, K., Namba, K., Minamino, T.
PDB entry 2dpz: Structure of the complex of phospholipase A2 with N-(4-hydroxyphenyl)- acetamide at 2.1 A resolution
Classification: HYDROLASE
Source organism: Daboia russellii pulchella
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-05-18
Authors: Singh, N., Sharma, S., Singh, T.P.
PDB entry 2dq0: Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with a seryl-adenylate analog
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-05-18
Authors: Itoh, Y., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dq3: Crystal structure of aq_298
Classification: LIGASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-05-18
Authors: Itoh, Y., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dq4: Crystal structure of threonine 3-dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-05-19
Authors: Omi, R., Yao, T., Goto, M., Miyahara, I., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dq5: solution structure of the Mid1 B Box2 Chc(D/C)C2H2 Zinc-Binding Domain: insights into an evolutionary conserved ring fold
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-05-20
Authors: Massiah, M.A., Matts, J.A.B., Short, K.M., Simmons, B.N., Singireddy, S., Zou, J., Cox, T.C.
PDB entry 2dq6: Crystal Structure of Aminopeptidase N from Escherichia coli
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-05-22
Authors: Nakajima, Y., Onohara, Y., Ito, K., Yoshimoto, T.
PDB entry 2dq7: Crystal Structure of Fyn kinase domain complexed with staurosporine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-05-23
Authors: Kinoshita, T., Tada, T.
PDB entry 2dqa: Crystal Structure of Tapes japonica Lysozyme
Classification: HYDROLASE
Source organism: Tapes japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-05-24
Authors: Goto, T., Kakuta, Y., Abe, Y., Takeshita, K., Imoto, T., Ueda, T.
PDB entry 2dqb: Crystal structure of dNTP triphosphohydrolase from Thermus thermophilus HB8, which is homologous to dGTP triphosphohydrolase
Classification: HYDROLASE, DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-05-25
Authors: Kondo, N., Nakagawa, N., Ebihara, A., Chen, L., Liu, Z.-J., Wang, B.-C., Yokoyama, S., Kuramitsu, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dqc: Crystal structure of hyhel-10 FV mutant(Hy33f) complexed with hen egg lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-05-25
Authors: Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
PDB entry 2dqd: Crystal structure of hyhel-10 FV mutant (Hy50f) complexed with hen egg lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-05-25
Authors: Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
PDB entry 2dqe: Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-05-25
Authors: Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
PDB entry 2dqf: Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-05-25
Authors: Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
PDB entry 2dqg: Crystal structure of hyhel-10 FV mutant (Hy53f) complexed with hen egg lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-05-25
Authors: Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
PDB entry 2dqh: Crystal structure of hyhel-10 FV mutant (Hy58a) complexed with hen egg lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-05-26
Authors: Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
PDB entry 2dqi: Crystal structure of hyhel-10 FV mutant (Ly50a) complexed with hen egg lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-05-26
Authors: Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
PDB entry 2dqj: Crystal structure of hyhel-10 FV (wild-type) complexed with hen egg lysozyme at 1.8A resolution
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-05-26
Authors: Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
PDB entry 2dqk: Crystal structure of the complex of proteinase K with a specific lactoferrin peptide Val-Leu-Leu-His at 1.93 A resolution
Classification: HYDROLASE
Source organism: Engyodontium album; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2006-05-29
Authors: Singh, A.K., Singh, N., Sharma, S., Dey, S., Bhushan, A., Singh, T.P.
PDB entry 2dql: Crystal structure of the circadian clock associated protein Pex from anabaena
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Anabaena sp. PCC 7120
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-05-29
Authors: Kurosawa, S., Kouyama, T.
PDB entry 2dqm: Crystal Structure of Aminopeptidase N complexed with bestatin
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-05-29
Authors: Onohara, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
PDB entry 2dqn: Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Asn
Classification: LIGASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2006-05-29
Authors: Nakamura, A., Yao, M., Tanaka, I.
PDB entry 2dqo: Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2006-05-29
Authors: Juan, E.C.M., Kondo, J., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 2dqp: Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-05-29
Authors: Juan, E.C.M., Kondo, J., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 2dqq: Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-05-29
Authors: Juan, E.C.M., Kondo, J., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.
PDB entry 2dqr: Crystal structure of the replication terminator protein mutant RTP.E39K.R42Q
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2006-05-29
Authors: Vivian, J.P., Wilce, J.A., Wilce, M.C.J.
PDB entry 2dqs: Crystal structure of the calcium pump with amppcp in the absence of calcium
Classification: HYDROLASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-05-29
Authors: Toyoshima, C., Norimatsu, Y., Tsueda, J.
PDB entry 2dqt: High resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-05-30
Authors: Kristensen, O., Vassylyev, D.G., Tanaka, F., Ito, N., Morikawa, K., Fujii, I.
PDB entry 2dqu: Crystal form II: high resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-05-30
Authors: Kristensen, O., Vassylyev, D.G., Tanaka, F., Ito, N., Morikawa, K., Fujii, I.
PDB entry 2dqv: Structure of the C-terminal lobe of bovine lactoferrin in complex with galactose at 2.7 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2006-05-31
Authors: Mir, R., Singh, N., Sinha, M., Sharma, S., Bhushan, A., Singh, T.P.
PDB entry 2dqw: Crystal Structure of Dihydropteroate Synthase (FolP) from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-05-31
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dqx: mutant beta-amylase (W55R) from soy bean
Classification: HYDROLASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-06-01
Authors: Ishikawa, K.
PDB entry 2dqy: Crystal structure of human carboxylesterase in complex with cholate and palmitate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-06-02
Authors: Bencharit, S., Edwards, C.C., Morton, C.L., Howard-Williams, E.L., Potter, P.M., Redinbo, M.R.
PDB entry 2dqz: Crystal structure of human carboxylesterase in complex with homatropine, coenzyme A, and palmitate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-06-02
Authors: Bencharit, S., Redinbo, M.R.
PDB entry 2dr0: Crystal structure of human carboxylesterase in complex with taurocholate
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2006-06-02
Authors: Bencharit, S., Redinbo, M.R.
PDB entry 2dr1: Crystal structure of the PH1308 protein from Pyrococcus horikoshii OT3
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-06-05
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dr2: Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp)
Classification: LIGASE/RNA
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2006-06-05
Authors: Shen, N., Guo, L., Yang, B., Jin, Y., Ding, J.
PDB entry 2dr3: Crystal Structure of RecA superfamily ATPase PH0284 from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-06-06
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dr5: Complex structure of CCA adding enzyme with mini-helix lacking CCA
Classification: TRANSFERASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-06-08
Authors: Tomita, K., Ishitani, R., Fukai, S., Nureki, O.
PDB entry 2dr6: Crystal structure of a multidrug transporter reveal a functionally rotating mechanism
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2006-06-08
Authors: Murakami, S., Nakashima, R., Yamashita, E., Matsumoto, T.
PDB entry 2dr7: Complex structure of CCA-adding enzyme with tRNAminiDC
Classification: TRANSFERASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-06-08
Authors: Tomita, K., Ishitani, R., Fukai, S., Nureki, O.
PDB entry 2dr8: Complex structure of CCA-adding enzyme with tRNAminiDC and CTP
Classification: TRANSFERASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-06-08
Authors: Tomita, K., Ishitani, R., Fukai, S., Nureki, O.
PDB entry 2dr9: Complex structure of CCA-adding enzyme with tRNAminiDCC
Classification: TRANSFERASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-06-08
Authors: Tomita, K., Ishitani, R., Fukai, S., Nureki, O.
PDB entry 2dra: Complex structure of CCA-adding enzyme with tRNAminiDCC and ATP
Classification: TRANSFERASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-06-08
Authors: Tomita, K., Ishitani, R., Fukai, S., Nureki, O.
PDB entry 2drb: Complex structure of CCA-adding enzyme with tRNAminiCCA
Classification: TRANSFERASE/RNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-06-08
Authors: Tomita, K., Ishitani, R., Fukai, S., Nureki, O.
PDB entry 2drc: INVESTIGATION OF THE FUNCTIONAL ROLE OF TRYPTOPHAN-22 IN ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE BY SITE-DIRECTED MUTAGENESIS
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1992-06-10
Authors: Brown, K.A., Kraut, J.
PDB entry 2drd: Crystal structure of a multidrug transporter reveal a functionally rotating mechanism
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2006-06-08
Authors: Murakami, S., Nakashima, R., Yamashita, E., Matsumoto, T.
PDB entry 2dre: Crystal structure of Water-soluble chlorophyll protein from lepidium virginicum at 2.00 angstrom resolution
Classification: PLANT PROTEIN
Source organism: Lepidium virginicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-06-08
Authors: Horigome, D., Satoh, H., Itoh, N., Mitsunaga, K., Oonishi, I., Nakagawa, A., Uchida, A.
PDB entry 2drh: Crystal structure of the PH0078 protein from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-06-09
Authors: Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dri: PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS
Classification: SUGAR TRANSPORT
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 1994-09-23
Authors: Mowbray, S.L., Cole, L.B.
PDB entry 2drj: Xray structure of alpha-2,3/8-sialyltransferase CstII F91Y mutant
Classification: TRANSFERASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-06-09
Authors: Chiu, C.P.C., Strynadka, N.C.J.
PDB entry 2drk: Acanthamoeba myosin I SH3 domain bound to Acan125
Classification: CONTRACTILE PROTEIN
Source organism: Acanthamoeba castellanii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2006-06-09
Authors: Houdusse, A., Bahloul, A., Ostap, E.M.
PDB entry 2drm: Acanthamoeba myosin I SH3 domain bound to Acan125
Classification: CONTRACTILE PROTEIN
Source organism: Acanthamoeba; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2006-06-09
Authors: Houdusse, A., Bahloul, A., Ostap, E.M.
PDB entry 2drn: Docking and dimerization domain (D/D) of the Type II-alpha regulatory subunity of protein kinase A (PKA) in complex with a peptide from an A-kinase anchoring protein
Classification: TRANSFERASE
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2006-06-11
Authors: Newlon, M.G., Roy, M., Morikis, D., Hausken, Z.E., Coghlan, V., Scott, J.D., Jennings, P.A.
PDB entry 2dro: Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263C mutant
Classification: HYDROLASE
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-06-12
Authors: Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
PDB entry 2drp: THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION
Classification: TRANSCRIPTION/DNA
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1994-06-06
Authors: Fairall, L., Schwabe, J.W.R., Chapman, L., Finch, J.T., Rhodes, D.
PDB entry 2drq: Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263G mutant
Classification: HYDROLASE
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-06-12
Authors: Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
PDB entry 2drr: Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263N mutant
Classification: HYDROLASE
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-06-12
Authors: Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
PDB entry 2drs: Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263S mutant
Classification: HYDROLASE
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-06-12
Authors: Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
PDB entry 2drt: Structure Analysis of (POG)4-LOG-(POG)5
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-06-14
Authors: Okuyama, K.
PDB entry 2dru: Crystal structure and binding properties of the CD2 and CD244 (2B4) binding protein, CD48
Classification: IMMUNE SYSTEM
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-06-15
Authors: Evans, E.J., Ikemizu, S., Davis, S.J.
PDB entry 2drv: Structure of PH1069 protein from Pyrococcus horikoshii OT3
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-06-15
Authors: Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2drw: The crystal structutre of D-amino acid amidase from Ochrobactrum anthropi SV3
Classification: HYDROLASE
Source organism: Ochrobactrum anthropi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-06-15
Authors: Okazaki, S., Suzuki, A., Komeda, H., Asano, Y., Yamane, T.
PDB entry 2drx: Structure Analysis of (POG)4-(LOG)2-(POG)4
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2006-06-16
Authors: Okuyama, K.
PDB entry 2dry: Crystal structure of the earthworm lectin C-terminal domain mutant
Classification: SUGAR BINDING PROTEIN
Source organism: Lumbricus terrestris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-06-16
Authors: Suzuki, R., Fujimoto, Z.
PDB entry 2drz: Crystal structure of the earthworm lectin C-terminal domain mutant in complex with lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Lumbricus terrestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2006-06-16
Authors: Suzuki, R., Fujimoto, Z.
PDB entry 2ds0: Crystal structure of the earthworm lectin C-terminal domain mutant in complex with 6'-sialyllactose
Classification: SUGAR BINDING PROTEIN
Source organism: Lumbricus terrestris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-06-16
Authors: Suzuki, R., Fujimoto, Z.
PDB entry 2ds1: Human cyclin dependent kinase 2 complexed with the CDK4 inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-06-17
Authors: Ikuta, M.
PDB entry 2ds2: Crystal structure of mabinlin II
Classification: PLANT PROTEIN
Source organism: Capparis masaikai
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-06-19
Authors: Li, D.F., Zhu, D.Y., Wang, D.C.
PDB entry 2ds4: Solution structure of the filamin domain from human tripartite motif protein 45
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-06-21
Authors: Tomizawa, T., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2ds5: Structure of the ZBD in the orthorhomibic crystal from
Classification: METAL BINDING PROTEIN, PROTEIN BINDING
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-06-22
Authors: Song, H.K., Park, E.Y., Lee, B.G., Hong, S.B.
PDB entry 2ds6: Structure of the ZBD in the tetragonal crystal form
Classification: METAL BINDING PROTEIN, PROTEIN BINDING
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-06-22
Authors: Park, E.Y., Lee, B.G., Hong, S.B., Song, H.K.
PDB entry 2ds7: Structure of the ZBD in the hexagonal crystal form
Classification: METAL BINDING PROTEIN, PROTEIN BINDING
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-06-22
Authors: Park, E.Y., Lee, B.G., Hong, S.B., Song, H.K.
PDB entry 2ds8: Structure of the ZBD-XB complex
Classification: METAL BINDING PROTEIN, PROTEIN BINDING
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-06-22
Authors: Park, E.Y., Lee, B.G., Hong, S.B., Kim, H.W., Song, H.K.
PDB entry 2ds9: Structure of the complex of C-terminal lobe of bovine lactoferrin with mannose at 2.8 A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-06-22
Authors: Mir, R., Singh, N., Sinha, M., Sharma, S., Bhushan, A., Singh, T.P.
PDB entry 2dsa: Ternary complex of BphK, a bacterial GST
Classification: TRANSFERASE
Source organism: Burkholderia xenovorans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-06-24
Authors: Tocheva, E.I., Murphy, M.E.P.
PDB entry 2dsb: Crystal structure of human ADP-ribose pyrophosphatase NUDT5
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-06-28
Authors: Zha, M., Zhong, C., Ding, J.
PDB entry 2dsc: Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and ADP-ribose
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-06-28
Authors: Zha, M., Zhong, C., Ding, J.
PDB entry 2dsd: Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and AMP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2006-06-28
Authors: Zha, M., Zhong, C., Ding, J.
PDB entry 2dsf: Structure of the complex of C-terminal lobe of bovine lactoferrin with xylose at 2.8A resolution
Classification: METAL BINDING PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-06-29
Authors: Mir, R., Singh, N., Sinha, M., Sharma, S., Bhushan, A., Singh, T.P.
PDB entry 2dsg: Crystal structure of Lys26 to Arg mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-06-30
Authors: Mizutani, H., Matsuura, Y., Saraboji, K., Malathy Sony, S.M., Ponnuswamy, M.N., Kumarevel, T.S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dsh: Crystal structure of Lys26 to Tyr mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-06-30
Authors: Mizutani, H., Matsuura, Y., Saraboji, K., Malathy Sony, S.M., Ponnuswamy, M.N., Kumarevel, T.S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dsi: Crystal structure of Glu171 to Arg mutant of Diphthine synthase
Classification: TRANSFERASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-06-30
Authors: Mizutani, H., Matsuura, Y., Saraboji, K., Malathy Sony, S.M., Ponnuswamy, M.N., Kumarevel, T.S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dsj: Crystal structure of project ID TT0128 from Thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2006-06-30
Authors: Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dsk: Crystal structure of catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-06-30
Authors: Nakamura, T., Mine, S., Hagihara, Y., Ishikawa, K., Uegaki, K.
PDB entry 2dsl: Mutant N33D structure of phenylacetic acid degradation protein PaaI from Thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-06-30
Authors: Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dsm: NMR Structure of Bacillus Subtilis Protein YqaI, Northeast Structural Genomics Target SR450
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Bacillus subtilis
Experimental method: SOLUTION NMR
Deposited: 2006-07-01
Authors: Ramelot, T.A., Cort, J.R., Wang, D., Janua, H., Cunningham, K., Ma, L.C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)
PDB entry 2dsn: Crystal structure of T1 lipase
Classification: HYDROLASE
Source organism: Geobacillus zalihae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-07-03
Authors: Matsumura, H., Kai, Y.
PDB entry 2dso: Crystal structure of D138N mutant of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-07-04
Authors: Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
PDB entry 2dsp: Structural Basis for the Inhibition of Insulin-like Growth Factors by IGF Binding Proteins
Classification: PROTEIN BINDING/HORMONE/GROWTH FACTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-07-05
Authors: Sitar, T., Popowicz, G.M., Siwanowicz, I., Huber, R., Holak, T.A.
PDB entry 2dsq: Structural Basis for the Inhibition of Insulin-like Growth Factors by IGF Binding Proteins
Classification: PROTEIN BINDING/HORMONE/GROWTH FACTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-07-05
Authors: Sitar, T., Popowicz, G.M., Siwanowicz, I., Huber, R., Holak, T.A.
PDB entry 2dsr: Structural Basis for the Inhibition of Insulin-like Growth Factors by IGF Binding Proteins
Classification: PROTEIN BINDING/HORMONE/GROWTH FACTOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-07-05
Authors: Sitar, T., Popowicz, G.M., Siwanowicz, I., Huber, R., Holak, T.A.
PDB entry 2dst: Crystal Structure Analysis of TT1977
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2006-07-06
Authors: Xie, Y., Kishishita, S., Murayama, K., Shirouzu, M., Chen, L., Liu, Z.J., Wang, B.C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dsu: Binding of chitin-like polysaccharide to protective signalling factor: Crystal structure of the complex formed between signalling protein from sheep (SPS-40) with a tetrasaccharide at 2.2 A resolution
Classification: SIGNALING PROTEIN
Source organism: Ovis aries
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-07
Authors: Srivastava, D.B., Ethayathulla, A.S., Kumar, J., Singh, N., Sharma, S., Kaur, P., Bhushan, A., Singh, T.P.
PDB entry 2dsv: Interactions of protective signalling factor with chitin-like polysaccharide: Crystal structure of the complex between signalling protein from sheep (SPS-40) and a hexasaccharide at 2.5A resolution
Classification: SIGNALING PROTEIN
Source organism: Ovis aries
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2006-07-07
Authors: Srivastava, D.B., Ethayathulla, A.S., Kumar, J., Singh, N., Sharma, S., Bhushan, A., Srinivasan, A., Singh, T.P.
PDB entry 2dsw: Binding of chitin-like polysaccharides to protective signalling factor: crystal structure of the complex of signalling protein from sheep (SPS-40) with a pentasaccharide at 2.8 A resolution
Classification: SIGNALING PROTEIN
Source organism: Ovis aries
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2006-07-07
Authors: Srivastava, D.B., Ethayathulla, A.S., Kumar, J., Singh, N., Sharma, S., Kaur, P., Bhushan, A., Singh, T.P.
PDB entry 2dsx: Crystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68 A resolution
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio gigas
Experimental method: X-RAY DIFFRACTION
Resolution: 0.68 Å
Deposited: 2006-07-07
Authors: Chen, C.-J., Lin, Y.-H., Huang, Y.-C., Liu, M.-Y.
PDB entry 2dsy: Crystal structure of TTHA0281 from thermus thermophilus HB8
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2006-07-07
Authors: Okazaki, N., Kumei, M., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dsz: Three dimensional structure of a goat signalling protein secreted during involution
Classification: SIGNALING PROTEIN
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2006-07-09
Authors: Kumar, J., Ethayathulla, A.S., Singh, N., Ujwal, R., Srivastava, D.B., Sharma, S., Singh, T.P.
PDB entry 2dt0: Crystal structure of the complex of goat signalling protein with the trimer of N-acetylglucosamine at 2.45A resolution
Classification: SIGNALING PROTEIN
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2006-07-09
Authors: Kumar, J., Ethayathulla, A.S., Srivastava, D.B., Singh, N., Sharma, S., Bhushan, A., Srinivasan, A., Singh, T.P.
PDB entry 2dt1: Crystal Structure Of The Complex Of Goat Signalling Protein With Tetrasaccharide At 2.09 A Resolution
Classification: SIGNALING PROTEIN
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2006-07-09
Authors: Kumar, J., Ethayathulla, A.S., Srivastava, D.B., Singh, N., Sharma, S., Bhushan, A., Kaur, P., Singh, T.P.
PDB entry 2dt2: Crystal structure of the complex formed between goat signalling protein with pentasaccharide at 2.9A resolution
Classification: SIGNALING PROTEIN
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2006-07-09
Authors: Ethayathulla, A.S., Kumar, J., Srivastava, D.B., Singh, N., Sharma, S., Bhushan, A., Singh, T.P.
PDB entry 2dt3: Crystal structure of the complex formed between goat signalling protein and the hexasaccharide at 2.28 A resolution
Classification: SIGNALING PROTEIN
Source organism: Capra hircus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2006-07-09
Authors: Kumar, J., Ethayathulla, A.S., Srivastava, D.B., Singh, N., Sharma, S., Singh, T.P.
PDB entry 2dt4: Crystal structure of Pyrococcus horikoshii a plant- and prokaryote-conserved (PPC) protein at 1.60 resolution
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2006-07-10
Authors: Lin, L., Nakano, H., Uchiyama, S., Fujimoto, S., Matsunaga, S., Nakamura, S.
PDB entry 2dt5: Crystal Structure of TTHA1657 (AT-rich DNA-binding protein) from Thermus thermophilus HB8
Classification: DNA BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2006-07-11
Authors: Nakamura, A., Sosa, A., Komori, H., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dt6: Solution structure of the first SURP domain of human splicing factor SF3a120
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-07-11
Authors: Kuwasako, K., He, F., Inoue, M., Tanaka, A., Sugano, S., Guentert, P., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dt7: Solution structure of the second SURP domain of human splicing factor SF3a120 in complex with a fragment of human splicing factor SF3a60
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2006-07-11
Authors: He, F., Kuwasako, K., Inoue, M., Guntert, P., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dt8: Fatty Acid Binding of a DegV family Protein from Thermus thermophilus
Classification: LIPID BINDING PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2006-07-11
Authors: Rehse, P.H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dt9: Crystal structure of the regulatory subunit of aspartate kinase from Thermus flavus
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2006-07-11
Authors: Yoshida, A., Tomita, T., Fushinobu, S., Kuzuyama, T., Nishiyama, M.
PDB entry 2dtb: DELTA-TOXIN AND ANALOGUES AS PEPTIDE MODELS FOR PROTEIN ION CHANNELS
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: SOLUTION NMR
Deposited: 1992-09-09
Authors: Bladon, C.M., Bladon, P., Parkinson, J.A.
PDB entry 2dtc: Crystal structure of MS0666
Classification: PROTEIN BINDING
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2006-07-12
Authors: Wang, H., Kishishita, S., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dtd: Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in ligand-free form
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma acidophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2006-07-12
Authors: Yasutake, Y., Nishiya, Y., Tamura, N., Tamura, T.
PDB entry 2dte: Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with NADH
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma acidophilum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2006-07-12
Authors: Yasutake, Y., Nishiya, Y., Tamura, N., Tamura, T.
PDB entry 2dth: The Crystal Structure of the Orthorhombic Form of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotin and ADP
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2006-07-12
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dti: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Pyrophosphate and Mn(2+)
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-12
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dtj: Crystal structure of regulatory subunit of aspartate kinase from Corynebacterium glutamicum
Classification: TRANSFERASE
Source organism: Corynebacterium glutamicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2006-07-12
Authors: Yoshida, A., Tomita, T., Fushinobu, S., Kuzuyama, T., Nishiyama, M.
PDB entry 2dtm: Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2006-07-13
Authors: Oda, M., Ito, N., Tsumuraya, T., Suzuki, K., Fujii, I.
PDB entry 2dtn: Crystal structure of Helicobacter pylori undecaprenyl pyrophosphate synthase complexed with pyrophosphate
Classification: TRANSFERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2006-07-13
Authors: Guo, R.T., Kuo, C.J., Chen, C.L., Ko, T.P., Liang, P.H., Wang, A.H.-J.
PDB entry 2dto: Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 Complexed with ATP and Biotin
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2006-07-13
Authors: Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 2dtr: STRUCTURE OF DIPHTHERIA TOXIN REPRESSOR
Classification: REPRESSOR
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1996-07-26
Authors: Qiu, X., Pohl, E., Hol, W.G.
PDB entry 2dts: Crystal Structure of the Defucosylated Fc Fragment from Human Immunoglobulin G1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2006-07-14
Authors: Matsumiya, S., Yamaguchi, Y., Saito, J., Nagano, M., Sasakawa, H., Otaki, S., Satoh, M., Shitara, K., Kato, K.