LiteFold/PDB huggingface dataset:
PDB entry 8i2f: Crystal structure of Bacillus subtilis LytE catalytic domain in complex with IseA
Classification: ANTIMICROBIAL PROTEIN/INHIBITOR
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-01-14
Authors: Tandukar, S., Kwon, E., Kim, D.Y.
PDB entry 8i2g: FSHR-Follicle stimulating hormone-compound 716340-Gs complex
Classification: HORMONE
Source organism: Cricetulus griseus; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-14
Authors: Duan, J., Xu, P., Yang, J., Ji, Y., Zhang, H., Mao, C., Luan, X., Jiang, Y., Zhang, Y., Zhang, S., Xu, H.E.
PDB entry 8i2h: Follicle stimulating hormone receptor
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2023-01-14
Authors: Duan, J., Xu, P., Yang, J., Ji, Y., Zhang, H., Mao, C., Luan, X., Jiang, Y., Zhang, Y., Zhang, S., Xu, H.E.
PDB entry 8i2j: E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface
Classification: LIGASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-01-14
Authors: Xiang, M., Zhou, H.
PDB entry 8i2k: Crystal structure of transcriptional regulator pvrA from Pseudomonas aeruginosa.
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.303 Å
Deposited: 2023-01-14
Authors: Pramanik, A., Datta, S.
PDB entry 8i2l: E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface
Classification: LIGASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-01-14
Authors: Xiang, M., Zhou, H.
PDB entry 8i2m: The crystal structure of homodimeric E. coli tryptophanyl-tRNA synthetase bound with niraparib at one of its two active sites
Classification: LIGASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-01-14
Authors: Xiang, M., Zhou, H.
PDB entry 8i2n: The RIPK1 kinase domain in complex with QY7-2B compound
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-01-14
Authors: Gong, X.Y., Li, Y., Meng, H.Y., Pan, L.F.
PDB entry 8i2p: Crystal structure of AtHPPD-Y19060 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.797 Å
Deposited: 2023-01-14
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8i2q: Beijerinckia indica beta-fructosyltransferase variant H395R/F473Y
Classification: TRANSFERASE
Source organism: Beijerinckia indica subsp. indica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-01-15
Authors: Tonozuka, T.
PDB entry 8i2r: Beijerinckia indica beta-fructosyltransferase variant H395R/F473Y in complex with fructose
Classification: TRANSFERASE
Source organism: Beijerinckia indica subsp. indica NBRC 3744
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-01-15
Authors: Tonozuka, T.
PDB entry 8i2s: Crystal structure of AtHPPD-Y18979 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.592 Å
Deposited: 2023-01-15
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8i2u: Crystal structure of AtHPPD-YH20282 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.989 Å
Deposited: 2023-01-15
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8i2z: Cryo-EM structure of the zeaxanthin-bound kin4B8
Classification: PROTON TRANSPORT
Source organism: uncultured Bdellovibrionales bacterium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-01-15
Authors: Murakoshi, S., Chazan, A., Shihoya, W., Beja, O., Nureki, O.
PDB entry 8i30: Crystal structure of the SARS-CoV-2 main protease in complex with 32j
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-16
Authors: Zeng, R., Huang, C., Xie, L.W., Wang, K., Liu, Y.Z., Yang, S.Y., Lei, J.
PDB entry 8i33: Coil 1a of lamin A (residue 25-65)
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-01-16
Authors: Jeong, S., Ha, N.C.
PDB entry 8i34: The crystal structure of EPD-BCP1 from a marine sponge
Classification: LIPID BINDING PROTEIN
Source organism: Haliclona sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-01-16
Authors: Shomura, Y., Kawasaki, S.
PDB entry 8i35: Acyl-ACP synthetase structure bound to oleic acid
Classification: CYTOSOLIC PROTEIN
Source organism: Vibrio harveyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-01-16
Authors: Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
PDB entry 8i36: Crystal structure of AtHPPD-Y18980 complex
Classification: OXIDOREDUCTASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.887 Å
Deposited: 2023-01-16
Authors: Dong, J., Lin, H.-Y., Yang, G.-F.
PDB entry 8i37: Helicobacter pylori G6PDH
Classification: ELECTRON TRANSPORT
Source organism: Helicobacter pylori SS1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-01-16
Authors: Zhou, N., Gao, L.Z.
PDB entry 8i38: Cryo-EM structure of abscisic acid transporter AtABCG25 in inward conformation
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-16
Authors: Huang, X., Zhang, X., Zhang, P.
PDB entry 8i39: Cryo-EM structure of abscisic acid transporter AtABCG25 with ABA
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-01-16
Authors: Huang, X., Zhang, X., Zhang, P.
PDB entry 8i3a: Cryo-EM structure of abscisic acid transporter AtABCG25 in outward conformation
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-01-16
Authors: Huang, X., Zhang, X., Zhang, P.
PDB entry 8i3b: Cryo-EM structure of abscisic acid transporter AtABCG25 in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-01-16
Authors: Huang, X., Zhang, X., Zhang, P.
PDB entry 8i3c: Cryo-EM structure of abscisic acid transporter AtABCG25 with CHS
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-01-16
Authors: Huang, X., Zhang, X., Zhang, P.
PDB entry 8i3d: Cryo-EM structure of abscisic acid transporter AtABCG25
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-01-17
Authors: Huang, X., Zhang, X., Zhang, P.
PDB entry 8i3e: Crystal structure of ELKS1 in complex with Piccolo
Classification: PROTEIN BINDING
Source organism: Mus musculus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-01-17
Authors: Cai, Q., Zhang, M.
PDB entry 8i3f: Crystal structure of Rco1-Eaf3 with peptide of histone H3 N-terminal
Classification: STRUCTURAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-01-17
Authors: Chen, Z., Xu, C.
PDB entry 8i3g: Crystal structure of Eaf3-Eaf7 complex
Classification: STRUCTURAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-01-17
Authors: Chen, Z., Xu, C.
PDB entry 8i3i: Acyl-ACP synthetase structure bound to AMP-PNP in the presence of MgCl2
Classification: CYTOSOLIC PROTEIN
Source organism: Vibrio harveyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-01-17
Authors: Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
PDB entry 8i3j: Crystal structure of human inner-arm dynein heavy chain d stalk and microtubule binding domain
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-01-17
Authors: Ko, S., Yu, J., Toda, A., Tanaka, H., Kurisu, G.
PDB entry 8i3n: crystal structure of yeast cytosine deaminase mutant yCD-RQ
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-01-17
Authors: Qin, M.M., Yao, L.S., Deng, H.Z.
PDB entry 8i3o: crystal structure of yeast cytosine deaminase mutant yCD-RQ-1/8SAH
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-17
Authors: Qin, M.M., Yao, L.S., Deng, H.Z.
PDB entry 8i3p: crystal structure of yeast cytosine deaminase mutant yCD-RQ-1/8SAH in complex with (R)-4-hydroxy-3,4-dihydropyrimidin-2(1H)-one
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-01-17
Authors: Qin, M.M., Deng, H.Z., Yao, L.S.
PDB entry 8i3q: Cryo-EM structure of Cas12g-sgRNA binary complex
Classification: RNA BINDING PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-01-17
Authors: Ouyang, S.Y., Liu, M.X., Li, Z.K.
PDB entry 8i3s: Local CryoEM structure of the SARS-CoV-2 S6P in complex with 7B3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-01-17
Authors: Li, Z., Yu, F., Cao, S., ZHao, H.
PDB entry 8i3u: Local CryoEM structure of the SARS-CoV-2 S6P in complex with 14B1 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-01-18
Authors: Li, Z., Yu, F., Cao, S.
PDB entry 8i3v: Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant escitalopram in an inward-open state at resolution of 2.85 angstrom.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-01-18
Authors: Tan, J., Xiao, Y., Kong, F., Lei, J., Yuan, Y., Yan, C.
PDB entry 8i3w: BANAL-20-236 Spike trimer
Classification: VIRAL PROTEIN
Source organism: unclassified Coronavirinae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-18
Authors: Wang, X., Xu, G.
PDB entry 8i3x: Rice APIP6-RING homodimer
Classification: TRANSFERASE
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-01-18
Authors: Zheng, Y., Zhang, X., Liu, Y., Liu, J., Wang, D.
PDB entry 8i3y: Crystal structure of ASCT from Trypanosoma brucei in complex with Succinyl-CoA.
Classification: ELECTRON TRANSPORT
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-01-18
Authors: Mochizuki, K., Inaoka, D.K., Fukuda, K., Kurasawa, H., Iyoda, K., Nakai, U., Harada, S., Balogun, E.O., Mazet, M., Millerioux, Y., Bringaud, F., Boshart, M., Hirayama, K., Kita, K., Shiba, T.
PDB entry 8i3z: Crystal structure of NAD-II riboswitch (two strands) with NMN at 1.67 angstrom
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2023-01-18
Authors: Peng, X., Lilley, D.M.J., Huang, L.
PDB entry 8i40: Crystal structure of ASCT from Trypanosoma brucei in complex with CoA.
Classification: ELECTRON TRANSPORT
Source organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2023-01-18
Authors: Mochizuki, K., Inaoka, D.K., Fukuda, K., Kurasawa, H., Iyoda, K., Nakai, U., Harada, S., Balogun, E.O., Mazet, M., Millerioux, Y., Bringaud, F., Boshart, M., Hirayama, K., Kita, K., Shiba, T.
PDB entry 8i41: Cryo-EM structure of nanodisc (asolectin) reconstituted GLIC at pH 7.5
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2023-01-18
Authors: Bharambe, N., Li, Z., Basak, S.
PDB entry 8i42: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 7.5
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-01-18
Authors: Bharambe, N., Li, Z., Basak, S.
PDB entry 8i43: Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-01-18
Authors: Ichijo, R., Kamimura, T., Kawai, G.
PDB entry 8i44: Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-01-18
Authors: Ichijo, R., Kamimura, T., Kawai, G.
PDB entry 8i45: Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-01-18
Authors: Ichijo, R., Kamimura, T., Kawai, G.
PDB entry 8i46: Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2023-01-18
Authors: Ichijo, R., Kamimura, T., Kawai, G.
PDB entry 8i47: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 5.5
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-18
Authors: Bharambe, N., Li, Z., Basak, S.
PDB entry 8i48: Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in closed state
Classification: MEMBRANE PROTEIN
Source organism: Gloeobacter violaceus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2023-01-18
Authors: Bharambe, N., Li, Z., Basak, S.
PDB entry 8i49: Acyl-ACP synthetase structure bound to ATP
Classification: CYTOSOLIC PROTEIN
Source organism: Vibrio harveyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2023-01-18
Authors: Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
PDB entry 8i4a: Cryo-EM structure of dipyridamole-bound ABCC4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-01-19
Authors: Chen, Y., Wang, L., Hou, W.T., Zhou, C.Z., Chen, Y., Li, Q.
PDB entry 8i4b: Cryo-EM structure of apo-form ABCC4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2023-01-19
Authors: Chen, Y., Wang, L., Hou, W.T., Zhou, C.Z., Chen, Y., Li, Q.
PDB entry 8i4c: Cryo-EM structure of U46619-bound ABCC4
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-01-19
Authors: Chen, Y., Wang, L., Hou, W.T., Zhou, C.Z., Chen, Y., Li, Q.
PDB entry 8i4d: X-ray structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, L-Rha complex at 100K
Classification: LYASE
Source organism: Fusarium oxysporum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.06 Å
Deposited: 2023-01-19
Authors: Yano, N., Kondo, T., Kusaka, K., Yamada, T., Arakawa, T., Sakamoto, T., Fushinobu, S.
PDB entry 8i4e: Omicron spike variant XBB with Bn03
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2023-01-19
Authors: Hao, A.H., Zhang, X., Chen, Z.G., Sun, L.
PDB entry 8i4f: Omicron spike variant XBB with n3130v-Fc
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-01-19
Authors: Hao, A.H., Zhang, X., Chen, Z.G., Sun, L.
PDB entry 8i4g: Omicron spike variant BQ.1.1 with n3130v-Fc
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2023-01-19
Authors: Hao, A.H., Zhang, X., Chen, Z.G., Sun, L.
PDB entry 8i4h: Omicron spike variant BA.1 with Bn03
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2023-01-19
Authors: Hao, A.H., Zhang, X., Chen, Z.G., Sun, L.
PDB entry 8i4i: The asymmetric structure of homodimeric E. coli TrpRS bound with tryptophanyl adenylate and L-tryptophan
Classification: LIGASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-19
Authors: Xiang, M., Zhou, H.
PDB entry 8i4j: Structure of wild-type Azami Green from Galaxea fascicularis
Classification: FLUORESCENT PROTEIN
Source organism: Galaxea fascicularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-01-19
Authors: Otsubo, S., Takekawa, N., Imamura, H., Imada, K.
PDB entry 8i4k: Structure of Azami Red1.0, a red fluorescent protein engineered from Azami Green
Classification: FLUORESCENT PROTEIN
Source organism: Galaxea fascicularis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2023-01-19
Authors: Otsubo, S., Takekawa, N., Imamura, H., Imada, K.
PDB entry 8i4l: Capsid structure of the Cyanophage P-SCSP1u
Classification: VIRUS
Source organism: Prochlorococcus phage P-SCSP1u
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-01-19
Authors: Liu, H., Dang, S.
PDB entry 8i4m: Portal-tail complex structure of the Cyanophage P-SCSP1u
Classification: VIRUS
Source organism: Prochlorococcus phage P-SCSP1u
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2023-01-19
Authors: Liu, H., Dang, S.
PDB entry 8i4n: Crystal strcuture of 6-phosphogluconate dehydrogenase from Corynebacterium glutamicum
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2023-01-20
Authors: Yu, H., Kim, K.-J.
PDB entry 8i4o: Design of a split green fluorescent protein for sensing and tracking an beta-amyloid
Classification: STRUCTURAL PROTEIN
Source organism: Bacteria Latreille et al. 1825
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-01-20
Authors: Taegeun, Y., Jinsu, L., Jungmin, Y., Jungmin, C., Wondo, H., Song, J.J., Haksung, K.
PDB entry 8i4p: crystal structure of Acyl-CoA dehydrogenase from Thermobifida fusca
Classification: OXIDOREDUCTASE
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-20
Authors: Choi, M., Kim, K.-J.
PDB entry 8i4q: Crystal structure of 6-phosphogluconate dehydrogenase from Corynebacterium glutamicum
Classification: OXIDOREDUCTASE
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-20
Authors: Yu, H., Kim, K.-J.
PDB entry 8i4r: Crystal structure of Acyl-CoA dehydrogenase complexed with Acetyl-CoA from Thermobifida fusca
Classification: OXIDOREDUCTASE
Source organism: Thermobifida fusca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-01-20
Authors: Choi, M., Seok, J., Kim, K.-J.
PDB entry 8i4s: the complex structure of SARS-CoV-2 Mpro with D8
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-21
Authors: Lu, M.
PDB entry 8i4t: Structure of the asymmetric unit of SFTSV virion
Classification: VIRAL PROTEIN
Source organism: Severe fever with thrombocytopenia syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2023-01-21
Authors: Du, S., Peng, R., Qi, J., Li, C.
PDB entry 8i4u: Cryo-EM structure of 5-subunit Smc5/6 hinge region
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.73 Å
Deposited: 2023-01-21
Authors: Qian, L., Jun, Z., Xiang, Z., Wang, Z., Tong, C., Duo, J., Zhenguo, C., Wang, L.
PDB entry 8i4v: Cryo-EM structure of 5-subunit Smc5/6 arm region
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.97 Å
Deposited: 2023-01-21
Authors: Qian, L., Jun, Z., Xiang, Z., Cheng, T., Zhaoning, W., Zhenguo, C., Wang, L.
PDB entry 8i4w: Cryo-EM structure of 5-subunit Smc5/6 head region
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.01 Å
Deposited: 2023-01-21
Authors: Qian, L., Jun, Z., Xiang, Z., Zhaoning, W., Cheng, T., Duo, J., Zhenguo, C., Wang, L.
PDB entry 8i4x: Cryo-EM structure of 5-subunit Smc5/6
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.5 Å
Deposited: 2023-01-21
Authors: Qian, L., Jun, Z., Xiang, Z., Zhaoning, W., Tong, C., Duo, J., Zhenguo, C., Wang, L.
PDB entry 8i4y: CalA3 complex structure with amidation product
Classification: TRANSFERASE
Source organism: Streptomyces chartreusis NRRL 3882
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2023-01-21
Authors: Wang, J., Wang, Z.
PDB entry 8i4z: CalA3 with hydrolysis product
Classification: TRANSFERASE
Source organism: Streptomyces chartreusis NRRL 3882
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2023-01-21
Authors: Wang, J., Wang, Z.
PDB entry 8i50: Crystal structure of DNA octamer containing GuNA[Me,Me]
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 0.95 Å
Deposited: 2023-01-21
Authors: Aoyama, H., Obika, S., Yamaguchi, T.
PDB entry 8i51: Acyl-ACP synthetase structure bound to AMP-MC7
Classification: CYTOSOLIC PROTEIN
Source organism: Vibrio harveyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-01-21
Authors: Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
PDB entry 8i52: Crystal structure of VIM-2 metallo-beta-lactamase in complex with 10-HHIA
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-01-23
Authors: Wachino, J.
PDB entry 8i53: Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH
Classification: TRANSCRIPTION
Source organism: Schizosaccharomyces pombe
Experimental method: SOLUTION NMR
Deposited: 2023-01-23
Authors: Okuda, M., Nishimura, Y.
PDB entry 8i54: Lb2Cas12a RNA DNA complex
Classification: ANTIMICROBIAL PROTEIN
Source organism: Lachnospiraceae bacterium MA2020; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2023-01-24
Authors: Li, J., Sivaraman, J., Satoru, M.
PDB entry 8i55: Wild-type CfbA at 1.99 angstrom resolution
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-01-24
Authors: Ogawa, S., Fujishiro, T.
PDB entry 8i56: CfbA S11T variant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2023-01-24
Authors: Ogawa, S., Fujishiro, T.
PDB entry 8i57: Uroporphyrin III (UPIII)-bound CfbA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2023-01-24
Authors: Ogawa, S., Fujishiro, T.
PDB entry 8i58: Uroporphyrin I (UPI)-bound CfbA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2023-01-24
Authors: Ogawa, S., Fujishiro, T.
PDB entry 8i59: N-acetyl-(R)-beta-phenylalanine acylase, selenomethionyl derivative
Classification: HYDROLASE
Source organism: Burkholderia sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.21 Å
Deposited: 2023-01-24
Authors: Kato, Y., Natsume, R.
PDB entry 8i5a: N-acetyl-(R)-beta-phenylalanine acylase, 2.75 angstrom resolution
Classification: HYDROLASE
Source organism: Burkholderia sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-01-24
Authors: Kato, Y., Natsume, R.
PDB entry 8i5b: Structure of human Nav1.7 in complex with bupivacaine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-24
Authors: Wu, Q.R., Yan, N.
PDB entry 8i5c: Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.34 Å
Deposited: 2023-01-24
Authors: Lu, D., Chen, Y., Jiang, M., Tan, S.G., Chai, Y., Gao, G.F.
PDB entry 8i5d: Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-01-25
Authors: Lu, D., Chen, Y., Jiang, M., Tan, S.G., Chai, Y., Gao, G.F.
PDB entry 8i5e: Crystal structure of HLA-A*11:01 in complex with KRAS peptide (VVGAGGVGK)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-25
Authors: Lu, D., Chen, Y., Jiang, M., Tan, S.G., Chai, Y., Gao, G.F.
PDB entry 8i5f: Crystal structure of the DHR-2 domain of DOCK10 in complex with Cdc42 (T17N mutant)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-01-25
Authors: Kukimoto-Niino, M., Mishima-Tsumagari, C., Fukui, Y., Yokoyama, S., Shirouzu, M.
PDB entry 8i5g: Structure of human Nav1.7 in complex with PF-05089771
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-01-25
Authors: Wu, Q.R., Yan, N.
PDB entry 8i5h: Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2023-01-25
Authors: Yamamoto, A., Higashiura, A.
PDB entry 8i5i: Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2023-01-25
Authors: Yamamoto, A., Higashiura, A.
PDB entry 8i5j: Crystal structure of chitin oligosaccharide binding protein from Vibrio cholera.
Classification: SUGAR BINDING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.602 Å
Deposited: 2023-01-25
Authors: Ohnuma, T., Takeshita, D.
PDB entry 8i5k: Crystal structure of chitin oligosaccharide binding protein from Vibrio cholera in complex with chitotriose.
Classification: SUGAR BINDING PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.219 Å
Deposited: 2023-01-25
Authors: Ohnuma, T., Takeshita, D.
PDB entry 8i5l: Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5.
Classification: VIRAL PROTEIN
Source organism: Chiba virus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-01-26
Authors: Kato-Murayama, M., Murayama, K., Shirouzu, M.
PDB entry 8i5m: Rat Kir4.1 in complex with PIP2
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-01-26
Authors: Zhao, C., Guo, J.
PDB entry 8i5n: Rat Kir4.1 in complex with PIP2 and Lys05
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-01-26
Authors: Zhao, C., Guo, J.
PDB entry 8i5o: Crystal structure of TxGH116 D593A acid/base mutant from Thermoanaerobacterium xylanolyticum
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-01-26
Authors: Pengthaisong, S., Ketudat Cairns, J.R.
PDB entry 8i5p: Crystal structure of TxGH116 D593A acid/base mutant from Thermoanaerobacterium xylanolyticum with cellobiose
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-01-26
Authors: Pengthaisong, S., Ketudat Cairns, J.R.
PDB entry 8i5q: Crystal structure of TxGH116 D593A acid/base mutant from Thermoanaerobacterium xylanolyticum with laminaribiose
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-26
Authors: Pengthaisong, S., Ketudat Cairns, J.R.
PDB entry 8i5r: Crystal structure of TxGH116 D593N acid/base mutant from Thermoanaerobacterium xylanolyticum
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-01-26
Authors: Pengthaisong, S., Ketudat Cairns, J.R.
PDB entry 8i5s: Crystal structure of TxGH116 D593N acid/base mutant from Thermoanaerobacterium xylanolyticum with 2-deoxy-2-fluoroglucoside
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-01-26
Authors: Pengthaisong, S., Ketudat Cairns, J.R.
PDB entry 8i5t: Crystal structure of TxGH116 D593N acid/base mutant from Thermoanaerobacterium xylanolyticum with cellobiose
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-01-26
Authors: Pengthaisong, S., Ketudat Cairns, J.R.
PDB entry 8i5u: Crystal structure of TxGH116 D593N acid/base mutant from Thermoanaerobacterium xylanolyticum with laminaribiose
Classification: HYDROLASE
Source organism: Thermoanaerobacterium xylanolyticum LX-11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-01-26
Authors: Pengthaisong, S., Ketudat Cairns, J.R.
PDB entry 8i5v: DOCK10 mutant L1903Y complexed with Rac1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.726 Å
Deposited: 2023-01-26
Authors: Kukimoto-Niino, M., Mishima-Tsumagari, C., Ihara, K., Fukui, Y., Yokoyama, S., Shirouzu, M.
PDB entry 8i5w: Crystal structure of the DHR-2 domain of DOCK10 in complex with Rac1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.432 Å
Deposited: 2023-01-26
Authors: Kukimoto-Niino, M., Mishima-Tsumagari, C., Ihara, K., Fukui, Y., Yokoyama, S., Shirouzu, M.
PDB entry 8i5x: Structure of human Nav1.7 in complex with Vinpocetine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-01-26
Authors: Wu, Q.R., Yan, N.
PDB entry 8i5y: Structure of human Nav1.7 in complex with vixotrigine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-01-26
Authors: Wu, Q.R., Yan, N.
PDB entry 8i5z: LDH Mutant P101Q-(An unexpected single-point mutation triggers the unleashing of catalytic potential of a NADH-dependent dehydrogenase)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermodesulfatator indicus DSM 15286
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-01-26
Authors: Liu, J.Q.
PDB entry 8i60: Crystal structure of GAS41 YEATS domain in complex with histone H3K27cr
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-01-26
Authors: Konuma, T., Zhou, M.-M.
PDB entry 8i61: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with Barbituric acid and Citric acid, Form I
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i62: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with Barbituric acid, Form I
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i63: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with Barbituric acid, Form III
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i64: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with Barbituric acid, Form II
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i65: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with isoorotic acid (2,4-Dihydroxypyrimidine-5-carboxylic Acid), Form I
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i66: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with isoorotic acid (2,4-Dihydroxypyrimidine-5-carboxylic Acid) and citric acid, Form I
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i67: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with 2,4-Thiazolidinedione, Form I
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i68: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with Uric acid, Form III
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i69: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with 5-Fluoroorotic acid and Citric acid, Form I
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i6a: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with Orotic acid, Form III
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i6b: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with 5-Hydroxy-2,4(1H,3H)-pyrimidinedione, Form I
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i6c: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with 6-Formyl-uracil, Form III
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i6d: Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with 5-Hydroxy-2,4(1H,3H)-pyrimidinedione, Form VI
Classification: HYDROLASE/INHIBITOR
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-01-27
Authors: Raj, P., Paul, A., Gopal, B.
PDB entry 8i6g: Crystal structure of the African swine fever virus DNA sliding clamp (native form)
Classification: DNA BINDING PROTEIN
Source organism: African swine fever virus BA71V
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-01-28
Authors: Wu, J., Gong, P.
PDB entry 8i6h: Crystal structure of the African swine fever virus DNA sliding clamp (selenomethionine form)
Classification: DNA BINDING PROTEIN
Source organism: African swine fever virus BA71V
Experimental method: X-RAY DIFFRACTION
Resolution: 2.292 Å
Deposited: 2023-01-28
Authors: Wu, J., Gong, P.
PDB entry 8i6i: Crystal structure of cyclohexylamine oxidase from Acinetobacter sp. YT-02
Classification: FLAVOPROTEIN
Source organism: Acinetobacter sp. YT-02
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-01-28
Authors: Han, Z., Yan, D.
PDB entry 8i6j: The focused refinement of CCT3-PhLP2A from TRiC-PhLP2A complex in the open state
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2023-01-28
Authors: Roh, S.H., Park, J., Kim, H., Lim, S.
PDB entry 8i6k: Structure of hMNDA HIN with dsDNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-01-28
Authors: Li, Y.L., Jin, T.C.
PDB entry 8i6l: Crystal structure of horse spleen L-ferritin at -180deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-01-28
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8i6m: Acyl-ACP synthetase structure bound to AMP-C18:1
Classification: CYTOSOLIC PROTEIN
Source organism: Vibrio harveyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-01-28
Authors: Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
PDB entry 8i6n: Crystal structure of Co-type nitrile hydratase mutant from Pseudomonas thermophila - L6T
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-01-29
Authors: Ma, D., Cheng, Z.Y., Lai, Q.P., Hou, X.D., Yin, D.J., Rao, Y.J., Zhou, Z.M.
PDB entry 8i6o: Cryo-EM structure of Pseudomonas aeruginosa FtsE(WT)X/EnvC complex in peptidisc
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-01-29
Authors: Xu, X., Li, J., Luo, M.
PDB entry 8i6p: The cryo-EM structure of OsCyc1 tetramer state
Classification: ISOMERASE
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-01-29
Authors: Ma, X.L., Xu, H.F., Tong, Y.R., Luo, Y.F., Dong, Q.H., Jiang, T.
PDB entry 8i6q: Cryo-EM structure of Pseudomonas aeruginosa FtsE(WT)X complex in peptidisc
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å
Deposited: 2023-01-29
Authors: Xin, X., Jianwei, L., Min, L.
PDB entry 8i6r: Cryo-EM structure of Pseudomonas aeruginosa FtsE(E163Q)X/EnvC complex with ATP in peptidisc
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-01-29
Authors: Xu, X., Li, J., Luo, M.
PDB entry 8i6s: Cryo-EM structure of Pseudomonas aeruginosa FtsE(E163Q)X/EnvC complex with ATP in peptidisc
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-01-29
Authors: Xu, X., Li, J., Luo, M.
PDB entry 8i6t: The cryo-EM structure of OsCyc1 hexamer state
Classification: ISOMERASE
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-01-29
Authors: Ma, X.L., Xu, H.F., Tong, Y.R., Luo, Y.F., Dong, Q.H., Jiang, T.
PDB entry 8i6u: The cryo-EM structure of OsCyc1 dimer state
Classification: ISOMERASE
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.9 Å
Deposited: 2023-01-29
Authors: Ma, X.L., Xu, H.F., Tong, Y.R., Luo, Y.F., Dong, Q.H., Jiang, T.
PDB entry 8i6v: Cryo-EM structure of the polyphosphate polymerase VTC complex(Vtc4/Vtc3/Vtc1)
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-01-29
Authors: Mayer, A., Wu, S., Ye, S.
PDB entry 8i6y: Crystal structure of Arabidopsis thaliana LOX1
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.26 Å
Deposited: 2023-01-30
Authors: Liu, X., Liu, L.
PDB entry 8i6z: Crystal structure of apo-form of malonyl-CoA reductase C-domain from Chloroflexus aurantiacus
Classification: OXIDOREDUCTASE
Source organism: Chloroflexus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-01-30
Authors: Kim, S., Kim, K.-J.
PDB entry 8i70: Crystal structure of NADP-binding form of malonyl-CoA reductase C-domain from Chloroflexus aurantiacus
Classification: OXIDOREDUCTASE
Source organism: Chloroflexus aurantiacus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-01-30
Authors: Kim, S., Kim, K.-J.
PDB entry 8i71: Hepatitis B virus core protein Y132A mutant in complex with Linvencorvir (RG7907), a Hepatitis B Virus (HBV) Core Protein Allosteric Modulator (CpAM)
Classification: VIRAL PROTEIN
Source organism: Hepatitis B virus subtype adyw
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-01-30
Authors: Zhou, Z., Xu, Z.H.
PDB entry 8i74: Crystal structure of decarboxylated osteocalcin at pH 8.5
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2023-01-31
Authors: Yokoyama, T., Nabeshima, Y., Obita, T., Mizuguchi, M.
PDB entry 8i75: Crystal structure of decarboxylated osteocalcin at pH 2.0
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2023-01-31
Authors: Yokoyama, T., Nabeshima, Y., Obita, T., Mizuguchi, M.
PDB entry 8i76: Crystal structure of decarboxylated osteocalcin at pH 2.0 without glycerol
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.381 Å
Deposited: 2023-01-31
Authors: Yokoyama, T., Nabeshima, Y., Obita, T., Mizuguchi, M.
PDB entry 8i77: Crystal structure of horse spleen L-ferritin A115V mutant at -180deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-01-31
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8i78: Meso-Diaminopimelate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Proteus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2023-01-31
Authors: Wei, S., Wu, T.F.
PDB entry 8i79: Cryo-EM structure of KCTD7 in complex with Cullin3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-01-31
Authors: Jiang, W., Wang, W., Zheng, S.
PDB entry 8i7e: Crystal structure of Glyceraldehyde 3-phosphate dehydrogenase from Salmonella typhi at 2.05A
Classification: OXIDOREDUCTASE
Source organism: Salmonella enterica subsp. enterica serovar Typhi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-01-31
Authors: Kumar, N., Dilawari, R., Chaubey, G.K., Modanwal, R., Talukdar, S., Dhiman, A., Chaudhary, S., Patidar, A., Kumar, A., Raje, C.I., Raje, M., Kumaran, S.
PDB entry 8i7h: Meso-Diaminopimelate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Proteus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2023-01-31
Authors: Wu, T.F., Song, W.
PDB entry 8i7j: Yeast 40S-eIF4B - partially open conformation of the 40S head
Classification: RIBOSOME
Source organism: Kluyveromyces lactis NRRL Y-1140; Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2023-01-31
Authors: Datey, A., Khaja, F.T., Hussain, T.
PDB entry 8i7l: Crystal structure of indoleamine 2,3-dioxygenagse 1 (IDO1) complexed with a novel inhibitor
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-02-01
Authors: Li, K., Liu, W., Dong, X.
PDB entry 8i7n: The Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside
Classification: RNA
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-02-01
Authors: Luo, B., Zhang, C., Ling, X., Mukherjee, S., Jia, G., Xie, J., Jia, X., Liu, L., Baulin, E.F., Luo, Y., Jiang, L., Dong, H., Wei, X., Bujnicki, J.M., Su, Z.
PDB entry 8i7o: In situ structure of axonemal doublet microtubules in mouse sperm with 16-nm repeat
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2023-02-01
Authors: Zhu, Y., Yin, G.L., Tai, L.H., Sun, F.
PDB entry 8i7p: Crystal structure of Ricin A chain bound with N2-(2-amino-4-oxo-3,4-dihydropteridine-7-carbonyl)glycyl-L-tyrosine
Classification: HYDROLASE
Source organism: Ricinus communis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-02-01
Authors: Goto, M., Sakamoto, N., Higashi, S., Kawata, R., Nagatsu, K., Saito, R.
PDB entry 8i7q: Cobalt and Calcium coordinated Concanavalin A at pH 7.4 from Canavalia ensiformis
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2023-02-01
Authors: Hwang, Y., Jeong, J.H., Lee, S.J.
PDB entry 8i7r: In situ structure of axonemal doublet microtubules in mouse sperm with 48-nm repeat
Classification: STRUCTURAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2023-02-02
Authors: Zhu, Y., Yin, G.L., Tai, L.H., Sun, F.
PDB entry 8i7s: The crystal structure of human abl1 kinase domain in complex with ABL1-B1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94635 Å
Deposited: 2023-02-02
Authors: Zhu, C., Zhang, Z.