LiteFold/PDB huggingface dataset:
PDB entry 9m1d: Vitamin D receptor complex with a methyldiphenylpropylsilane derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-02-25
Authors: Thilakarathne, N.M.H.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9m1e: Crystal structure of the CPS-6 H148A/F122A versus cis-resveratrol complex
Classification: DNA BINDING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2025-02-25
Authors: Lin, L.J., Yuan, H.S.
PDB entry 9m1f: Crystal structure of E. coli tryptophanyl-tRNA synthetase complexed with chuangxinmycin and ATP in closed-closed state
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-02-25
Authors: Ren, Y., Wang, S., Liu, W., Fang, P.
PDB entry 9m1g: Crystal structure of E. coli tryptophanyl-tRNA synthetase complexed with chuangxinmycin and ATP in open-closed state
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-02-25
Authors: Ren, Y., Wang, S., Liu, W., Fang, P.
PDB entry 9m1h: Cryo-EM structure of PGE2-EP1-Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-02-26
Authors: Meng, X., Xu, Y., Xu, H.E.
PDB entry 9m1i: Cryo-EM structure of the TBC-D-Arl2-beta-tubulin complex
Classification: CHAPERONE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-02-26
Authors: Seong, Y.J., Kim, H.M., Byun, K.M., Park, Y.W., Roh, S.H.
PDB entry 9m1j: Cryo-EM structure of the TBC-DE-Arl2-beta-tubulin complex
Classification: CHAPERONE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2025-02-26
Authors: Seong, Y.J., Kim, H.M., Byun, K.M., Park, Y.W., Roh, S.H.
PDB entry 9m1k: Cryo-EM structure of the TBC-DE-Arl2-beta-tubulin complex with GTP
Classification: CHAPERONE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2025-02-26
Authors: Seong, Y.J., Kim, H.M., Byun, K.M., Park, Y.W., Roh, S.H.
PDB entry 9m1l: Cryo-EM structure of the TBC-DE-Arl2-alpha-beta-tubulin complex with GTP
Classification: CHAPERONE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-02-26
Authors: Seong, Y.J., Kim, H.M., Byun, K.M., Park, Y.W., Roh, S.H.
PDB entry 9m1m: Cryo-EM structure of the TBC-DEC-Arl2-alpha-beta-tubulin complex with GDP-AlFx
Classification: CHAPERONE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Deposited: 2025-02-26
Authors: Seong, Y.J., Kim, H.M., Byun, K.M., Park, Y.W., Roh, S.H.
PDB entry 9m1n: Cryo-EM structure of the TBC-DC-Arl2-alpha-beta-tubulin complex with GDP-AlFx
Classification: CHAPERONE
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2025-02-26
Authors: Seong, Y.J., Kim, H.M., Byun, K.M., Park, Y.W., Roh, S.H.
PDB entry 9m1o: Cryo-EM structures of NPFFR2 complex with neuropeptide FF
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Escherichia coli; Homo sapiens; Rattus norvegicus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-02-26
Authors: Pan, B.X., Li, X.Z., Jiang, Y.
PDB entry 9m1p: Cryo-EM structure of the histamine-bound zTAAR13d-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-26
Authors: Zheng, Y., Zhao, S.W.
PDB entry 9m1q: Crystal structure of N-terminal domain of hypothetical protein Rv1421 from Mycobacterium tuberculosis H37Rv
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-26
Authors: Lee, K.S., Park, J.
PDB entry 9m1v: Crystal structure of N-terminal domain of hypothetical protein Rv1421 from Mycobacterium tuberculosis H37Rv in complex with uridine diphosphate N-acetyl glucosamine
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-02-26
Authors: Lee, K.S., Park, J.
PDB entry 9m1w: Crystal structure of N-prenyltransferase DsKabA
Classification: TRANSFERASE
Source organism: Digenea simplex
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-02-26
Authors: Huang, W.J., Hsu, C.H.
PDB entry 9m1x: X-ray structure of human heart fatty acid-binding protein at 0.80 A resolution (holo-FABP3)
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.8 Å
Deposited: 2025-02-26
Authors: Sugiyama, S., Maekawa, S., Matsuoka, S., Murata, M.
PDB entry 9m1y: NMR Structure of Mouse Keratin 17 Tail Domain (G390 - R433) in solution
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: SOLUTION NMR
Deposited: 2025-02-26
Authors: Yeom, J., Lee, C.H., Kim, J.H.
PDB entry 9m1z: Crystal Structure of MAP2K6 complexed with 5Z-7-oxozeaenol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-02-26
Authors: Yumura, S., Kinoshita, T.
PDB entry 9m20: GmMAN19-1 from Glycine max
Classification: HYDROLASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.389 Å
Deposited: 2025-02-26
Authors: Lin, C.J., Hsu, C.H.
PDB entry 9m21: GmMAN19-1 from Glycine max in complex with mannopentaose
Classification: HYDROLASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 2.621 Å
Deposited: 2025-02-26
Authors: Lin, C.J., Hsu, C.H.
PDB entry 9m22: X-ray structure of human heart fatty acid-binding protein delipidated with Lipidex
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.8 Å
Deposited: 2025-02-26
Authors: Sugiyama, S., Maekawa, S., Matsuoka, S., Murata, M.
PDB entry 9m23: FIH [Factor Inhibiting HIF (Hypoxia Inducible Factor)] in complex with Zn(II) and N-((4-(trifluoromethyl)phenyl)sulfonyl)picolinamide (SB133)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-02-27
Authors: Nakashima, Y., Basak, S., Corner, T.P., Salah, E., Schofield, C.J.
PDB entry 9m24: Crystal Structure of kelch domain of human KEAP1 in complex with CH7450924
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2025-02-27
Authors: Kawauchi, H., Fukami, T.A., Irie, M., Torizawa, T., Yasui, Y., Hoshino, M., Kimbara, A.
PDB entry 9m25: Type I diterpene synthase from Streptomyces
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces xinghaiensis S187
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-02-27
Authors: Bai, Z.Y., Ma, M.
PDB entry 9m26: Crystal structure of Enterobacter cloacae YcdY, a member of the redox enzyme maturation protein family
Classification: CHAPERONE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-02-27
Authors: Choi, H.J., Lee, S.J., Kim, J.H., Yoon, S.I.
PDB entry 9m27: SERF1_HUMAN short isoform of Small EDRK-rich factor 1, SERF1a at pH 6.0.
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-02-27
Authors: Huang, S.Y., Shih, O., Jeng, U.S., Chang, C.F., Lin, J.H., Malliavin, T.E.
PDB entry 9m28: Crystal Structure of monomeric Rag-like small GTPase from Asgard Lokiarchaeota (LokiRagM) in complex with GTP
Classification: HYDROLASE
Source organism: Promethearchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-02-27
Authors: Alsheikh, F.B., Robinson, R.C.
PDB entry 9m29: Crystal Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor AD05
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.967 Å
Deposited: 2025-02-27
Authors: Yin, W., Kong, W.P., Wong, K.Y.
PDB entry 9m2a: The crystal structure of the trypanosome alternative oxidase complexed with a trypanocidal phosphonium derivative (compound1)
Classification: OXIDOREDUCTASE
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2025-02-27
Authors: Ebiloma, G.U., Balogun, E.O., Dardonville, C., De Koning, H.P., Shiba, T.
PDB entry 9m2b: X-ray structure of human heart fatty acid-binding protein (apo-FABP3)
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2025-02-27
Authors: Sugiyama, S., Maekawa, S., Matsuoka, S., Murata, M.
PDB entry 9m2c: Type I PQQ-dependent alcohol dehydrogenase
Classification: TOXIN
Source organism: Paradevosia tibetensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-02-27
Authors: Shi, Y., Mu, W.M., Xu, W.
PDB entry 9m2d: SERF1_HUMAN short isoform of Small EDRK-rich factor 1, serf1a at pH 6.8.
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-02-27
Authors: Huang, S.Y., Shih, O., Jeng, U.S., Chang, C.F., Lin, J.H., Malliavin, T.E.
PDB entry 9m2e: Crystal Structure of Nur77 LBD in complex with DBIC compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.575 Å
Deposited: 2025-02-27
Authors: Hong, W.B., Lin, T.W., Chen, X.Q., Wu, Q.
PDB entry 9m2f: Structure of neuropeptide FF receptor 1 complex with NPFF
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-02-27
Authors: Pan, B.X., Jiang, Y., Li, X.Z.
PDB entry 9m2g: Crystal Structure of the double mutant (Y128F and C222A) of Sortase E from Thermobifida fusca
Classification: HYDROLASE
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2025-02-27
Authors: Sharma, V., Murmu, S., Roy, R.P., Krishnan, V.
PDB entry 9m2h: Structure of the auxin importer AUX1 in Arabidopsis thaliana in the CHPAA-bound state
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-02-27
Authors: Sun, L., Liu, X., Wei, H., Yang, Z.
PDB entry 9m2i: E. coli MaeB holo form ME domain dimer
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-02-27
Authors: Sassa, M., Yamato, H., Tanino, H., Fukuda, Y., Inoue, T.
PDB entry 9m2j: Type I PQQ-dependent alcohol dehydrogenase
Classification: TOXIN
Source organism: Paradevosia tibetensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-02-27
Authors: Shi, Y., Xu, W., Mu, W.M.
PDB entry 9m2k: Type I PQQ-dependent alcohol dehydrogenase
Classification: TOXIN
Source organism: Paradevosia tibetensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2025-02-27
Authors: Shi, Y., Mu, W.M., Xu, W.
PDB entry 9m2l: Crystal structure of okaE in complex with a-ketoglutarate and okaramine A at 2.5 angstroms resolution.
Classification: OXIDOREDUCTASE
Source organism: Penicillium simplicissimum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2025-02-27
Authors: Liu, T.H., Yan, W.P.
PDB entry 9m2m: the crystal structure of okaE
Classification: OXIDOREDUCTASE
Source organism: Penicillium simplicissimum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-02-27
Authors: Liu, T.H., Yan, W.P., Wang, X.Y.
PDB entry 9m2n: Crystal Structure of the double mutant (Y128A and C222A) of Sortase E mutant from Thermobifida fusca
Classification: HYDROLASE
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-02-27
Authors: Sharma, V., Murmu, S., Roy, R.P., Krishnan, V.
PDB entry 9m2o: Cryo-EM structure of the putrescine-bound zTAAR13d-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-02-28
Authors: Zheng, Y., Zhao, S.W.
PDB entry 9m2p: Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, apo structure
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-02-28
Authors: Raina, R., Kar, D., Singla, M., Tiwari, S., Kumari, S., Aneja, S., Kumar, V., Banerjee, S., Goyal, S., Pal, R.K., Vinothkumar, K.R., Biswal, B.K.
PDB entry 9m2q: Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, in complex with aminotriazole
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-02-28
Authors: Raina, R., Kar, D., Singla, M., Tiwari, S., Kumari, S., Aneja, S., Kumar, V., Banerjee, S., Goyal, S., Pal, R.K., Vinothkumar, K.R., Biswal, B.K.
PDB entry 9m2r: Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, apo structure
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-02-28
Authors: Raina, R., Kar, D., Singla, M., Tiwari, S., Kumari, S., Aneja, S., Kumar, V., Banerjee, S., Goyal, S., Pal, R.K., Vinothkumar, K.R., Biswal, B.K.
PDB entry 9m2s: Cryo-EM structure of the cadaverine-bound zTAAR13c-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-02-28
Authors: Zheng, Y., Zhao, S.W.
PDB entry 9m2t: Crystal structure of glycerol kinase from Entamoeba histolytica complexed with AMP-PNP and glycerol.
Classification: TRANSFERASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-02-28
Authors: Balogun, E.O., Jeelani, G., Hane, E., Kondo, H., Hasegawa, Y., Kojima, C., Chishima, T., Harada, S., Kishikawa, J., Nozaki, T., Shiba, T.
PDB entry 9m2u: Crystal Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor AD06
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.967 Å
Deposited: 2025-02-28
Authors: Yin, W., Kong, W.P., Wong, K.Y.
PDB entry 9m2v: Crystal Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor MC12
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.967 Å
Deposited: 2025-02-28
Authors: Yin, W., Kong, W.P., Wong, K.Y.
PDB entry 9m2w: The cryo-EM structure of 26S proteasome-Midnolin complex in the MD state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-02-28
Authors: Wang, H.Y., Xu, W.Q.
PDB entry 9m2x: Decamer Msp1 from S.cerevisiae(with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-02-28
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9m2y: Crystal structure of a DUF3237 protein from Aspergillus
Classification: UNKNOWN FUNCTION
Source organism: Aspergillus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-02-28
Authors: Li, C.P., Xiao, Q.J., Yang, M.H.
PDB entry 9m2z: Crystal structure of an DUF3237 protein from Aspergillus
Classification: UNKNOWN FUNCTION
Source organism: Aspergillus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2025-02-28
Authors: Li, C.P., Jiang, Q.Y., Yang, M.H.
PDB entry 9m30: DjCas13d-crRNA binary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ruminococcus sp. UBA7013
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-02-28
Authors: Chen, X.Y., Huang, H.D.
PDB entry 9m31: CasRx-crRNA binary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ruminococcus sp. XPD3002
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-02-28
Authors: Chen, X.Y., Huang, H.D.
PDB entry 9m33: DjCas13d-crRNA-target RNA1 ternary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ruminococcus sp. UBA7013
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-02-28
Authors: Chen, X.Y., Huang, H.D.
PDB entry 9m34: DjCas13d-crRNA-target RNA2 ternary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Ruminococcus sp. UBA7013
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-02-28
Authors: Chen, X.Y., Huang, H.D.
PDB entry 9m35: E. coli MaeB acetyl-CoA bound form ME domain dimer
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2025-02-28
Authors: Sassa, M., Yamato, H., Tanino, H., Fukuda, Y., Inoue, T.
PDB entry 9m36: Structure of human TRPC5 in the low Ca environment.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-02-28
Authors: Song, K.C., Wei, M., Chen, L.
PDB entry 9m37: Crystal structure of the DgpA2 protein from P581a bound to homoorientin
Classification: ISOMERASE
Source organism: human gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-03-01
Authors: Ma, W.
PDB entry 9m38: apo-DjCas13d
Classification: RNA BINDING PROTEIN
Source organism: Ruminococcus sp. UBA7013
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2025-03-01
Authors: Chen, X.Y., Huang, H.D.
PDB entry 9m39: The crystal structure of DgpA2 protein from P581a bound to Isoschaftosid
Classification: ISOMERASE
Source organism: human gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-03-01
Authors: Ma, W.
PDB entry 9m3a: Crystal structure of the DgpB2/C2 complex from W974-1 in substrate free form
Classification: ISOMERASE
Source organism: human gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2025-03-01
Authors: Ma, W.
PDB entry 9m3b: Crystal structure of the DgpB1/C1 protein from P581a substrate free form
Classification: ISOMERASE
Source organism: human gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.036 Å
Deposited: 2025-03-01
Authors: Ma, W.
PDB entry 9m3d: Crystal structure of the DgpA1 protein from W974-1 substrate free form
Classification: ISOMERASE
Source organism: human gut metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-01
Authors: Ma, W.
PDB entry 9m3e: Carotenoid Cleavage Dioxygenase 1 variant from Osmanthus fragrans A191G E408Q
Classification: PLANT PROTEIN
Source organism: Osmanthus fragrans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-03-01
Authors: Sharma, D., Xue, B.
PDB entry 9m3f: Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Classification: VIRAL PROTEIN
Source organism: Rhinolophus cornutus; Sarbecovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-03-02
Authors: Matsumoto, K., Shihoya, W., Nureki, O.
PDB entry 9m3i: Crystal structure of the Bre1-Lge1 complex
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-03-02
Authors: Zhang, H., Xiang, S.
PDB entry 9m3j: structure of bundle-shaped PBS with both long rod and (ApcA2B3ApcD) trimer
Classification: PHOTOSYNTHESIS
Source organism: Gloeobacter violaceus PCC 7421
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-03-02
Authors: Ma, J., Sui, S.-F.
PDB entry 9m3k: Crystal structure of GinKR1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Glycyrrhiza inflata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-03-02
Authors: Ye, L., Wang, Z.L., Ye, M.
PDB entry 9m3l: Crystal structure of ADP-ribosylated endolytic muramidase TdeM from Pseudomonas aeruginosa
Classification: DE NOVO PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-03
Authors: Zhang, L., Zhang, L.
PDB entry 9m3m: Structure of FSP1 in complex with FSEN1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-03-03
Authors: Zhang, S.T., Jia, D.
PDB entry 9m3n: Crystal structure of human TRIM21 PRYSPRY in complex with T-02
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-03-03
Authors: Zhang, L.J., Zhang, L.Y.
PDB entry 9m3o: Crystal structure of human pyruvate dehydrogenase kinase isoform 1 in complex with ATP competitive inhibitor 8
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.762 Å
Deposited: 2025-03-03
Authors: Xu, Z.H., Chen, S.
PDB entry 9m3p: Crystal structure of human pyruvate dehydrogenase kinase isoform 1 in complex with ATP competitive inhibitor 3
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-03-03
Authors: Xu, Z.H., Chen, S.
PDB entry 9m3q: Cryo-EM structure of the spermidine-bound zTAAR13c-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-03-03
Authors: Zheng, Y., Zhao, S.W.
PDB entry 9m3r: Crystal structure of human pyruvate dehydrogenase kinase isoform 1 in complex with ATP competitive inhibitor 29
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-03-03
Authors: Xu, Z.H., Chen, S.
PDB entry 9m3s: Cryo-EM structure of the histamine-bound zTAAR13a-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-03-03
Authors: Zheng, Y., Zhao, S.W.
PDB entry 9m3t: Crystal structure of human pyruvate dehydrogenase kinase isoform 2 in complex with ATP competitive inhibitor 22
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-03-03
Authors: Xu, Z.H., Chen, S.
PDB entry 9m3u: Crystal structure of human pyruvate dehydrogenase kinase isoform 2 in complex with ATP competitive inhibitor 24
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-03-03
Authors: Xu, Z.H., Chen, S., Han, L.
PDB entry 9m3v: Arabidopsis thaliana CDC48A, nucleotide-free (Apo)
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-03-03
Authors: Huntington, B., Arold, S.T.
PDB entry 9m3w: Arabidopsis thaliana CDC48A bound to AMP-PNP (AMPPNP-Up)
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-03
Authors: Huntington, B., Arold, S.T.
PDB entry 9m3x: Arabidopsis thaliana CDC48A bound to AMP-PNP (AMPPNP-Down)
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-03
Authors: Huntington, B., Arold, S.T.
PDB entry 9m3y: Arabidopsis thaliana CDC48A bound to ADP
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-03-03
Authors: Huntington, B., Arold, S.T.
PDB entry 9m3z: Arabidopsis thaliana CDC48A-NPL4-UFD1B (AtCNU) complex
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-03-03
Authors: Huntington, B., Arold, S.T.
PDB entry 9m40: Cryo-EM structure of the agmatine-bound zTAAR13e-Gs complex
Classification: STRUCTURAL PROTEIN
Source organism: Danio rerio; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-03-03
Authors: Zheng, Y., Zhao, S.W.
PDB entry 9m41: The crystal structure of full-length PAK2 containing K278R and D368N mutants
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2025-03-03
Authors: Hu, H.-F., Luo, Z.P., Wu, J.-W., Wang, Z.-X.
PDB entry 9m42: Structure-based discovery of potent agonists of the orphan receptor GPR139
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Niallia circulans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-03-03
Authors: Cabezadevaca, I., Trapkov, B., Shen, L., Pezeshki, M., Zhang, X.H., Liu, Z.j., Hauser, A.S., Carlsson, J.
PDB entry 9m46: Crystal structure of IQSEC2 CC domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-03-03
Authors: Bai, G., Cai, Q., Zhang, M.
PDB entry 9m47: Substrate Promiscuous Cytochrome P450 RufO
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces atratus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-03-04
Authors: Saniya, D., Abhishek, S., Rajakumara, E.
PDB entry 9m48: Cryo-EM structure of 6:1 nsp15/dsRNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-03-04
Authors: Wang, L., Li, J., Zhu, B., Wang, X.
PDB entry 9m49: Cryo-EM structure of 6:2 nsp15/dsRNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-03-04
Authors: Wang, L., Li, J., Zhu, B., Wang, X.
PDB entry 9m4a: Cryo-EM structure of pre-pore state IV of heptameric alpha-hemolysin in the presence of RBC
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-03-04
Authors: Chatterjee, A., Roy, A., Dutta, S.
PDB entry 9m4f: Photosystem I from the eukaryotic filamentous algae
Classification: PHOTOSYNTHESIS
Source organism: Tribonema minus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-03-04
Authors: Shao, R.Q., Pan, X.W.
PDB entry 9m4g: Structure of AtCDC48 N-domain
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-03-04
Authors: Sandholu, A.S., Zhang, J., Brandon, Z.H., Hameed, U.F.S., Arold, S.T.
PDB entry 9m4l: Crystal structure of 9-mer peptide from H5N1 avian influenza virus in complex with B4 DUCK MHC I (UAA*76)
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-03-04
Authors: Li, Y.L., Gao, F., Dai, M.M., Liao, M.
PDB entry 9m4m: Crystal structure of human DHODH in complex with Lapachol derivatives, 511-12
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-04
Authors: Pemba, M.C., Sakurai, Y., Kurosaki, Y., Amalia, E., Inaoka, D.K., Davey, A.R., Shiba, T., Kita, K., Yasuda, J.
PDB entry 9m4n: Structure of AtCDC48
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2025-03-04
Authors: Sandholu, A.S., Zhang, J., Brandon, Z.H., Hameed, U.F.S., Arold, S.T.
PDB entry 9m4o: Crystal structure of human DHODH in complex with Lapachol
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-03-04
Authors: Pemba, M.C., Sakurai, Y., Kurosaki, Y., Amalia, E., Inaoka, D.K., Davey, A.R., Shiba, T., Kita, K., Yasuda, J.
PDB entry 9m4p: Cryo-EM structure of alpha-hemolysin heptameric pore state in the presence of RBC
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-04
Authors: Chatterjee, A., Roy, A., Dutta, S.
PDB entry 9m4q: CryoEM structure of the alpha1AAR complex with doxazosin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-03-04
Authors: Liu, S.S., Guo, Q., Wang, D.D., Tao, Y.Y., Jiao, H.Z.
PDB entry 9m4r: crystal structure of Arabidopsis thaliana ING1 PHD finger in complex with an H3K4me3 peptide
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-04
Authors: Li, X., Du, J.
PDB entry 9m4s: crystal structure of Arabidopsis thaliana ING2 PHD finger in complex with an H3K4me3 peptide
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.601 Å
Deposited: 2025-03-04
Authors: Li, X., Du, J.
PDB entry 9m4t: CryoEM structure of the alpha1AAR complex with silodosin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-03-04
Authors: Liu, S.S., Guo, Q., Wang, D.D., Tao, Y.Y., Jiao, H.Z.
PDB entry 9m4u: Crystal Structure of Sortase E mutant P94A from Thermobifida fusca
Classification: HYDROLASE
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2025-03-04
Authors: Sharma, V., Murmu, S., Roy, R.P., Krishnan, V.
PDB entry 9m4w: Structure of human TRPC5 bound with (-)-englerin A, class 2.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-03-05
Authors: Chen, Y.K., Wei, M., Chen, L.
PDB entry 9m4x: Cubic insulin crystal, Esrapid, at pH 2
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-03-05
Authors: Ayan, E., Tosha, T.
PDB entry 9m4y: Cubic insulin crystal, Esrapid, at pH 3
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-03-05
Authors: Ayan, E., Tosha, T.
PDB entry 9m4z: Cubic insulin crystal, Esrapid, at pH 4
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-03-05
Authors: Ayan, E., Tosha, T.
PDB entry 9m50: Cubic insulin crystal, Esrapid, at pH 5
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-03-05
Authors: Ayan, E., Tosha, T.
PDB entry 9m51: Cubic insulin crystal, Esrapid, at pH 6
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2025-03-05
Authors: Ayan, E., Tosha, T.
PDB entry 9m53: Crystal structure of 1L-myo-inositol 1-phosphate synthase 1 from Oryza sativa
Classification: ISOMERASE
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-03-05
Authors: Akabane, T., Yota, A., Katoh, E., Hirotsu, N.
PDB entry 9m54: Cryo-EM structure of neuropeptide FF receptor 2 complex with NPVF
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Mus musculus; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2025-03-05
Authors: Pan, B.X., Jiang, Y., Li, X.Z.
PDB entry 9m55: Structural insight into determinants of endogenous agonist selectivity of aminergic receptors from octopamine b2 receptor structure
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Ixodes scapularis; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2025-03-05
Authors: Hori, T., Katsuta, K., Shirouzu, M.
PDB entry 9m56: Bovine Heart Cytochrome c Oxidase in the Fully Reduced State
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-05
Authors: Muramoto, K., Shinzawa-Itoh, K.
PDB entry 9m57: Structural insight into determinants of endogenous agonist selectivity of aminergic receptors from octopamine b2 receptor structure
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Ixodes scapularis; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-03-05
Authors: Hori, T., Katsura, K., Shirouzu, M.
PDB entry 9m58: Cu/Zn-superoxide dismutase from Deinococcus radiodurans (Calcium-free)
Classification: METAL BINDING PROTEIN
Source organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-05
Authors: Akutsu, M., Muraki, N., Megata, M., Furukawa, Y.
PDB entry 9m59: Cu/Zn-superoxide dismutase from Deinococcus radiodurans (Calcium-bound)
Classification: METAL BINDING PROTEIN
Source organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-03-05
Authors: Muraki, N., Megata, M., Furukawa, Y.
PDB entry 9m5b: A Human Fc Receptor Ectodomain in Complex With a Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-03-05
Authors: Zhao, Z., Wang, H., Duan, Y., Zhang, H., Yang, H.
PDB entry 9m5c: Hexamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-03-05
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9m5d: Crystal structure of S. aureus protein A bound to a human single-domain antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Staphylococcus aureus (strain NCTC 8325 / PS 47)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.57 Å
Deposited: 2025-03-05
Authors: Kong, Y., Shi, J.L., Ying, T.L., Yang, Z.L., Xu, Q.Y.
PDB entry 9m5e: Structure of SPIN90 dimer-Arp2/3 complex-nucleated actin filament (singlet complex)
Classification: CYTOSOLIC PROTEIN
Source organism: Bos taurus; Gallus gallus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2025-03-05
Authors: Francis, J., Pathri, A.K., Chowdhury, S.
PDB entry 9m5f: zearalenone degrading enzyme with a-zearalenol
Classification: HYDROLASE
Source organism: Monosporascus sp. GIB2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-03-05
Authors: Ouyang, B., Xu, W.
PDB entry 9m5g: Crystal structure of a thermostable zearalenone-degrading lactonase mutant - S102A with ligand zearalenone
Classification: HYDROLASE
Source organism: Monosporascus sp. GIB2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-05
Authors: Ouyang, B., Xu, W.
PDB entry 9m5h: D14.F25.S02 Fab complexed to DENV2-US/BID/V594/2006 virus (5f-3f map)
Classification: VIRUS
Source organism: dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.09 Å
Deposited: 2025-03-05
Authors: Chatterjee, A.C., Mangala Prasad, V.
PDB entry 9m5i: Crystal Structure of the double mutant (P94A and Y128F) of Sortase E from Thermobifida fusca
Classification: HYDROLASE
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-03-05
Authors: Sharma, V., Murmu, S., Roy, R.P., Krishnan, V.
PDB entry 9m5j: Crystal Structure of the double mutant (P94A and Y128A) of Sortase E from Thermobifida fusca
Classification: HYDROLASE
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-03-05
Authors: Sharma, V., Murmu, S., Roy, R.P., Krishnan, V.
PDB entry 9m5k: The cryo-EM structure of in situ amplified (ISA) alpha-synuclein fibrils from PD homogenate
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-03-06
Authors: Cao, T.Y., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 9m5l: The cryo-EM structure of in situ amplified (ISA) alpha-synuclein fibrils from DLB homogenate
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-03-06
Authors: Cao, T.Y., Zhao, Q.Y., Liu, C., Li, D.
PDB entry 9m5m: Crystal structure of Plasmodium vivax aspartyl-tRNA synthetase (PvDRS)
Classification: LIGASE
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-03-06
Authors: Sharma, V.K., Manickam, Y., Bagale, S., Pradeepkumar, P.I., Sharma, A.
PDB entry 9m5n: Plasmodium vivax aspartyl-tRNA synthetase in complex with aspartyl-adenylate (Asp-AMP) Complex.
Classification: LIGASE
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-03-06
Authors: Sharma, V.K., Manickam, Y., Sharma, A., Bagale, S., Pradeepkumar, P.I.
PDB entry 9m5o: Plasmodium vivax aspartyl-tRNA synthetase in complex with aspartyl sulfamoyl adenosine (Asp-AMS) Complex
Classification: LIGASE
Source organism: Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 1.839 Å
Deposited: 2025-03-06
Authors: Sharma, V.K., Manickam, Y., Sharma, A., Bagale, S., Pradeepkumar, P.I.
PDB entry 9m5p: I-type amyloid fibril (40) of Tottori (D7N) mutant
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-06
Authors: Burton-Smith, R.N., Murata, K.
PDB entry 9m5q: V-type (V1-type) amyloid fibril (40) of Tottori (D7N) mutant
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-03-06
Authors: Burton-Smith, R.N., Murata, K.
PDB entry 9m5r: ES-type (short pitch) amyloid fibril (40) of Tottori (D7N) mutant
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-03-06
Authors: Burton-Smith, R.N., Murata, K.
PDB entry 9m5s: Crystal structure of type A chloramphenicol acetyltransferase from Staphylococcus aureus at 1.8 angstrom resolution
Classification: ANTIBIOTIC
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-06
Authors: Wang, K., Chen, J., Ye, S.
PDB entry 9m5t: Structure of the flagellar filament in short-length at 3.02 angstroms resolution
Classification: PROTEIN FIBRIL
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-03-06
Authors: Chen, L.X., Jiang, W.X., Cheng, X.Q., Dong, X., Xing, Q.
PDB entry 9m5u: Cryo-EM structure of Arabidopsis thaliana MET1 (aa:621-1534) in complex with hemimethylated DNA analog
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-03-06
Authors: Kikuchi, A., Arita, K.
PDB entry 9m5v: Structure of human TRPC5 bound with (-)-englerin A,class1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-03-06
Authors: Chen, Y.K., Wei, M., Chen, L., Guo, W.J.
PDB entry 9m5w: Crystal Structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix complex with 5'-Deoxy-5'-methylthioadenosine 343K 1.58 angstrom
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-03-06
Authors: Iizuka, Y., Kikuchi, M., Yamauchi, T., Tsunoda, M.
PDB entry 9m5x: Cryo-EM structure of Arabidopsis thaliana MET1
Classification: STRUCTURAL PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-03-06
Authors: Kikuchi, A., Arita, K.
PDB entry 9m5y: the crystal structure of the Ca2+/CaM-CASK-CaMK complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-03-06
Authors: Li, W., Wang, Y.
PDB entry 9m5z: Hexamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-03-06
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9m62: X-ray Crystal Structure of Pseudoazurin Met16Arg variant, oxidized form at pH 7.0
Classification: ELECTRON TRANSPORT
Source organism: Achromobacter cycloclastes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2025-03-06
Authors: Nemoto, I., Yamaguchi, T., Kohzuma, T.
PDB entry 9m63: Crystal structure of 9-mer peptide from H5N1 avian influenza virus in complex with B4 DUCK MHC I (UAA*76)
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.352 Å
Deposited: 2025-03-07
Authors: Fei, G., Li, Y., Dai, M., Liao, M.
PDB entry 9m64: Structure of SPIN90 dimer-Arp2/3 complexes-nucleated actin filaments (Doublet Complex)
Classification: CYTOSOLIC PROTEIN
Source organism: Bos taurus; Gallus gallus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-07
Authors: Francis, J., Pathri, A.K., Chowdhury, S.
PDB entry 9m65: Crystal structure of the pathogen-secreted apoplastic GH12 xyloglucan-specific endoglucanase XEG1
Classification: HYDROLASE
Source organism: Phytophthora sojae strain P6497
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2025-03-07
Authors: Xia, Y.Q., Liu, L., Zhang, Q., Shi, X.C., Wang, Z.K., Zhang, Z.C., He, X.Y., Xiao, J.H., Jiang, H.B., Zhang, S.C., Yang, Y.H., Ye, W.W., Wang, Z.Y., Wang, Y., Ma, Z.C., Yang, Q., Wang, Y.C.
PDB entry 9m66: Cryo-EM structure of bacteriophage NF5 capsid
Classification: VIRAL PROTEIN
Source organism: Brochothrix phage NF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2025-03-07
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9m67: the flagellar filament cap FliD in complex with FliC
Classification: STRUCTURAL PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-07
Authors: Xing, Q., Cheng, X.Q., Jiang, W.X.
PDB entry 9m68: the flagellar filament cap FliD in complex with FlgL
Classification: STRUCTURAL PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-03-07
Authors: Xing, Q., Cheng, X.Q., Jiang, W.X.
PDB entry 9m6f: A thermostable zearalenone degrading enzyme mutant - S102A
Classification: HYDROLASE
Source organism: Monosporascus sp. GIB2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-03-07
Authors: Ouyang, B., Xu, W.
PDB entry 9m6g: the crystal structure of the Ca2+/CaM-CASK-CaMK-Mint1-CID complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-03-07
Authors: Li, W., Wang, Y.
PDB entry 9m6h: structure of FliD-FliC at a 10:10 stoichiometry
Classification: STRUCTURAL PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-03-07
Authors: Chen, L.X., Chen, X.Q., Zhang, F.F., Jiang, W.X., Xing, Q.
PDB entry 9m6i: structure of the FliD cap
Classification: STRUCTURAL PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-03-07
Authors: Xing, Q., Cheng, X.Q., Jiang, W.X.
PDB entry 9m6j: Crystal structure of S. aureus protein A bound to a camelid single-domain antibody
Classification: IMMUNE SYSTEM
Source organism: Camelidae; Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-03-07
Authors: Kong, Y., Shi, J.L., Wu, F.D., Zhao, T., Zhu, X.Y., Xu, Q.Y., Wang, R.B., Song, Y.D., Li, Q.X., Wang, Y.L., Gao, X.Y., Yang, Y.D., Wu, Y.L., Yang, Z.L., Yao, J.H., Ying, T.L.
PDB entry 9m6k: Cryo-EM structure of bacteriophage NF5 portal
Classification: VIRAL PROTEIN
Source organism: Brochothrix phage NF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-03-07
Authors: Peng, Y.N., Liu, H.R.
PDB entry 9m6l: Agn1p mutant D237N
Classification: HYDROLASE
Source organism: Schizosaccharomyces pombe DM3757
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-03-07
Authors: Horaguchi, Y., Yano, S., Makabe, K.
PDB entry 9m6m: Atomic-Level Architecture and Assembly Mechanism of High-order Structures of RIPK1 Fibril Network Revealed by Integrated Structural Biology
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: SOLID-STATE NMR
Deposited: 2025-03-07
Authors: Liu, J., Wu, X., Lu, J.
PDB entry 9m6n: Crystal Structure of the double mutant (P94A and C222A) of Sortase E from Thermobifida fusca
Classification: HYDROLASE
Source organism: Thermobifida fusca YX
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-03-07
Authors: Sharma, V., Murmu, S., Roy, R.P., Krishnan, V.
PDB entry 9m6o: Crystal structure of S. aureus protein A bound to a camelid single-domain antibody
Classification: IMMUNE SYSTEM
Source organism: Camelus dromedarius; Staphylococcus aureus (strain NCTC 8325 / PS 47)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2025-03-07
Authors: Kong, Y., Shi, J.L., Wu, F.D., Zhao, T., Zhu, X.Y., Xu, Q.Y., Wang, R.B., Song, Y.D., Li, Q.X., Wang, Y.L., Gao, X.Y., Yang, Y.D., Wu, Y.L., Yang, Z.L., Yao, J.H., Ying, T.L.
PDB entry 9m6p: Discovery of a bifunctional PKMYT1-targeting PROTAC empowered by AI-generation
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.383 Å
Deposited: 2025-03-07
Authors: Yazhou, W., Chao, W.
PDB entry 9m6q: Crystal structure of SARS-Cov-2 main protease S46F mutant in complex with Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-03-07
Authors: Zhou, X.L., Zhang, J., Li, J.
PDB entry 9m6r: Crystal structure of SARS-Cov-2 main protease E166N mutant in complex with Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2025-03-07
Authors: Li, W.W., Zhang, J., Li, J.
PDB entry 9m6s: Crystal structure of SARS-Cov-2 main protease E166R mutant in complex with Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28003 Å
Deposited: 2025-03-07
Authors: Zhou, X.L., Zhang, J., Li, J.