LiteFold/PDB huggingface dataset:
PDB entry 7c7b: Crystal structure of human TRAP1 with SJT009
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-05-24
Authors: Kim, D., Yang, S., Yoon, N.G., Park, E., Kim, S.Y., Kang, B.H., Lee, C., Kang, S.
PDB entry 7c7c: Crystal structure of human TRAP1 with SJT104
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2020-05-24
Authors: Kim, D., Yang, S., Yoon, N.G., Park, E., Kim, S.Y., Kang, B.H., Lee, C., Kang, S.
PDB entry 7c7d: Crystal structure of the catalytic unit of thermostable GH87 alpha-1,3-glucanase from Streptomyces thermodiastaticus strain HF3-3
Classification: HYDROLASE
Source organism: Streptomyces thermodiastaticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2020-05-25
Authors: Itoh, T., Panti, N., Toyotake, Y., Hayashi, J., Suyotha, W., Yano, S., Wakayama, M., Hibi, T.
PDB entry 7c7e: Crystal structure of C terminal domain of Escherichia coli DgoR
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O7:K1 (strain IAI39 / ExPEC)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.047 Å
Deposited: 2020-05-25
Authors: Lin, W.
PDB entry 7c7f: Crystal structures of AKR1C3 binary complex with NADP+
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-05-25
Authors: Irie, K., Toyooka, N., Endo, S.
PDB entry 7c7g: Crystal structures of AKR1C3 ternary complex with NADP+ and the chromene derivative 2j
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2020-05-25
Authors: Irie, K., Toyooka, N., Endo, S.
PDB entry 7c7h: Crystal structures of AKR1C3 ternary complex with NADP+ and the chromene derivative 2l
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2020-05-25
Authors: Irie, K., Toyooka, N., Endo, S.
PDB entry 7c7i: Crystal structure of SHANK3 SPN domain in complex with GTP-bound Rap1b(E30D,K31E)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2020-05-25
Authors: Xiao, L.X., Pan, L.F.
PDB entry 7c7j: Crystal structure of SHANK3 SPN domain in complex with GTP-bound Rap1b(G12V,Q63E)
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2020-05-25
Authors: Xiao, L.X., Pan, L.F.
PDB entry 7c7k: Crystal Structure of Thioacyl-Glyceraldehyde-3-phosphate dehydrogenase 1(GAPDH 1) from Escherichia coli at 1.77 Angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2020-05-26
Authors: Zhang, L., Liu, M.R., Bao, L.Y., Yao, Y.C., Bostrom, I.K., Wang, Y.D., Chen, A.Q., Li, J.X., Gu, S.H., Ji, C.N.
PDB entry 7c7l: Cryo-EM structure of the Cas12f1-sgRNA-target DNA complex
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: uncultured archaeon; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-05-26
Authors: Takeda, N.S., Nakagawa, R., Okazaki, S., Hirano, H., Kobayashi, K., Kusakizako, T., Nishizawa, T., Yamashita, K., Nishimasu, H., Nureki, O.
PDB entry 7c7m: The structure of SAM-bound CntL, an aminobutyrate transferase in staphylopine biosysnthesis
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2020-05-26
Authors: Luo, Z., Luo, S., Zhou, H.
PDB entry 7c7n: Crystal structure of E.coli DNA gyrase B in complex with 6-fluoro-8-(methylamino)-2-oxo-1,2-dihydroquinoline derivative
Classification: ISOMERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-05-26
Authors: Mima, M., Ushiyama, F.
PDB entry 7c7o: Crystal structure of E.coli DNA gyrase B in complex with 6-fluoro-8-(methylamino)-2-oxo-1,2-dihydroquinoline derivative
Classification: ISOMERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-05-26
Authors: Kamitani, M., Mima, M., Takeuchi, T., Ushiyama, F.
PDB entry 7c7p: Crystal structure of the SARS-CoV-2 main protease in complex with Telaprevir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2020-05-26
Authors: Zeng, R., Qiao, J.X., Wang, Y.F., Li, Y.S., Yao, R., Yang, S.Y., Lei, J.
PDB entry 7c7q: Cryo-EM structure of the baclofen/BHFF-bound human GABA(B) receptor in active state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-05-26
Authors: Mao, C., Shen, C., Li, C., Shen, D., Xu, C., Zhang, S., Zhou, R., Shen, Q., Chen, L., Jiang, Z., Liu, J., Zhang, Y.
PDB entry 7c7r: Biofilm associated protein - B domain
Classification: CELL ADHESION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2020-05-26
Authors: Ma, J.F., Xu, Z.H., Zhang, Y.K., Cheng, X., Fan, S.L., Wang, J.W., Fang, X.Y.
PDB entry 7c7s: Cryo-EM structure of the CGP54626-bound human GABA(B) receptor in inactive state.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-05-26
Authors: Mao, C., Shen, C., Li, C., Shen, D., Xu, C., Zhang, S., Zhou, R., Shen, Q., Chen, L., Jiang, Z., Liu, J., Zhang, Y.
PDB entry 7c7u: Biofilm associated protein - BSP domain
Classification: CELL ADHESION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2020-05-26
Authors: Ma, J.F., Xu, Z.H., Zhang, Y.K., Cheng, X., Fan, S.L., Wang, J.W., Fang, X.Y.
PDB entry 7c7v: Vitamin D3 receptor/lithochoric acid derivative complex
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-05-26
Authors: Masuno, H., Numoto, N., Kagechika, H., Ito, N.
PDB entry 7c7w: Vitamin D3 receptor/lithochoric acid derivative complex
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-05-26
Authors: Masuno, H., Numoto, N., Kagechika, H., Ito, N.
PDB entry 7c7x: Structural insights into nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)
Classification: TRANSCRIPTION/CHAPERONE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2020-05-27
Authors: Luo, Q., Baihui, W.
PDB entry 7c7y: C-terminal domain of B. cereus TubY
Classification: DNA BINDING PROTEIN
Source organism: Bacillus cereus (strain ATCC 10987 / NRS 248)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-05-27
Authors: Hayashi, I.
PDB entry 7c7z: Crystal structure of the flagellar junction protein FlgL from Legionella pneumophila
Classification: STRUCTURAL PROTEIN
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2020-05-27
Authors: Song, W.S., Hong, H.J., Yoon, S.I.
PDB entry 7c80: E30 F-particle in complex with 4B10
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Echovirus E30; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2020-05-28
Authors: Wang, K., Zheng, B., Zhang, L., Cui, L., Su, X., Zhang, Q., Guo, Y., Zhu, L., Zhu, F., Rao, Z., Wang, X.
PDB entry 7c81: E30 F-particle in complex with 6C5
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Echovirus E30; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-05-28
Authors: Wang, K., Zheng, B., Zhang, L., Cui, L., Su, X., Zhang, Q., Guo, Y., Zhu, L., Zhu, F., Rao, Z., Wang, X.
PDB entry 7c82: Crystal structure of AlinE4, a SGNH-hydrolase family esterase
Classification: HYDROLASE
Source organism: Altererythrobacter indicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2020-05-28
Authors: Li, Z., Li, J.
PDB entry 7c83: Crystal structure of an integral membrane steroid 5-alpha-reductase PbSRD5A
Classification: OXIDOREDUCTASE
Source organism: Proteobacteria bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-05-28
Authors: Ren, R.B., Han, Y.F., Xiao, Q.J., Deng, D.
PDB entry 7c84: Esterase AlinE4 mutant, D162A
Classification: HYDROLASE
Source organism: Altererythrobacter indicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.552 Å
Deposited: 2020-05-28
Authors: Li, Z., Li, J.
PDB entry 7c85: Esterase AlinE4 mutant-S13A
Classification: HYDROLASE
Source organism: Altererythrobacter indicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-05-28
Authors: Li, Z., Li, J.
PDB entry 7c86: Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: Dark state structure
Classification: MEMBRANE PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-05-28
Authors: Oda, K., Nomura, T., Nakane, T., Yamashita, K., Inoue, K., Ito, S., Vierock, J., Hirata, K., Maturana, A.D., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, R., Tanaka, T., Sugahara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.
PDB entry 7c87: Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) C50S/F80C/C207S/C213S mutant (ApPrx*F80C)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-05-29
Authors: Himiyama, T., Nakamura, T.
PDB entry 7c88: Complex structure of JS003 and PD-L1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2020-05-29
Authors: Bi, X., Shi, R., Chai, Y., Qi, J., Yan, J., Tan, S.
PDB entry 7c89: Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) C50S/F80C/C207S/C213S mutant modified with 2-bromoacetophenone(Ph@ApPrx*)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-05-29
Authors: Himiyama, T., Nakamura, T.
PDB entry 7c8a: Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) C50S/F80C/C207S/C213S mutant modified with 2-(bromoacetyl)naphthalene(Naph@ApPrx*)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-05-29
Authors: Himiyama, T., Nakamura, T.
PDB entry 7c8b: Crystal structure of the SARS-CoV-2 main protease in complex with Z-VAD(OMe)-FMK
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-05-29
Authors: Zeng, R., Qiao, J.X., Wang, Y.F., Li, Y.S., Yao, R., Yang, S.Y., Lei, J.
PDB entry 7c8d: Cryo-EM structure of cat ACE2 and SARS-CoV-2 RBD
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Felis catus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-05-29
Authors: Gao, G.F., Wang, Q.H., Wu, L.l.
PDB entry 7c8e: Crystal Structure of 14-3-3 epsilon with 9J10 peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2020-05-30
Authors: Mathivanan, S., Sudhakar, S., Bairy, S., Kamariah, N., Venkitaraman, A.
PDB entry 7c8f: Structure of alginate lyase AlyC3 in complex with dimannuronate(2M)
Classification: LYASE
Source organism: Psychromonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.461 Å
Deposited: 2020-05-30
Authors: Zhang, Y.Z., Xu, F., Chen, X.L., Wang, P.
PDB entry 7c8g: Structure of alginate lyase AlyC3
Classification: LYASE
Source organism: Psychromonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-05-30
Authors: Zhang, Y.Z., Xu, F., Chen, X.L., Wang, P.
PDB entry 7c8h: Ambient temperature structure of Bifidobacterium longum phosphoketolase with thiamine diphosphate
Classification: LYASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-06-01
Authors: Nakata, K., Kashiwagi, T., Nango, E., Miyano, H., Mizukoshi, T., Iwata, S.
PDB entry 7c8i: Ambient temperature structure of Bifidobacgterium longum phosphoketolase with thiamine diphosphate and phosphoenol pyuruvate
Classification: LYASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-06-01
Authors: Nakata, K., Kashiwagi, T., Nango, E., Miyano, H., Mizukoshi, T., Iwata, S.
PDB entry 7c8j: Structural basis for cross-species recognition of COVID-19 virus spike receptor binding domain to bat ACE2
Classification: VIRAL PROTEIN/PROTEIN BINDING
Source organism: Rhinolophus macrotis; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2020-06-01
Authors: Liu, K.F., Wang, J., Tan, S.G., Niu, S., Wu, L.L., Zhang, Y.F., Pan, X.Q., Meng, Y.M., Chen, Q., Wang, Q.H., Wang, H.W., Qi, J.X., Gao, G.F.
PDB entry 7c8k: Structural basis for cross-species recognition of COVID-19 virus spike receptor binding domain to bat ACE2
Classification: PROTEIN BINDING
Source organism: Rhinolophus macrotis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-06-02
Authors: Liu, K.F., Wang, J., Tan, S.G., Niu, S., Wu, L.L., Zhang, Y.F., Pan, X.Q., Meng, Y.M., Chen, Q., Wang, Q.H., Wang, H.W., Qi, J.X., Gao, G.F.
PDB entry 7c8l: Hybrid designing of potent inhibitors of Striga strigolactone receptor ShHTL7
Classification: HYDROLASE
Source organism: Striga hermonthica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-06-02
Authors: Shahul Hameed, U.F., Arold, S.T.
PDB entry 7c8m: Crystal structure of IscU wild-type
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methanothrix thermoacetophila
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2020-06-03
Authors: Kunichika, K., Takahashi, Y., Fujishiro, T.
PDB entry 7c8n: Crystal structure of IscU H106A variant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methanothrix thermoacetophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-06-03
Authors: Kunichika, K., Takahashi, Y., Fujishiro, T.
PDB entry 7c8o: Crystal structure of IscU D40A/H106A variant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methanothrix thermoacetophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2020-06-03
Authors: Kunichika, K., Takahashi, Y., Fujishiro, T.
PDB entry 7c8p: Structural and functional characterization of human group A rotavirus P[25] VP8*
Classification: PROTEIN BINDING
Source organism: Rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-06-03
Authors: Duan, Z., Dandi, L.
PDB entry 7c8q: Blasnase-T13A with D-asn
Classification: HYDROLASE
Source organism: Bacillus sp. SUBG0010
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2020-06-03
Authors: Lu, F., Ran, T., Jiao, L., Wang, W.
PDB entry 7c8r: Complex Structure of SARS-CoV-2 3CL Protease with TG-0203770
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-06-03
Authors: Lee, C.C., Wang, A.H.J., Kuo, C.J., Liang, P.H.
PDB entry 7c8s: Crystal structure of DUSP22 mutant_N128A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2020-06-03
Authors: Lai, C.H., Lyu, P.C.
PDB entry 7c8t: Complex Structure of SARS-CoV-2 3CL Protease with TG-0205221
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-06-03
Authors: Lee, C.C., Wang, A.H.J., Kuo, C.J., Liang, P.H.
PDB entry 7c8u: The crystal structure of COVID-19 main protease in complex with GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-06-03
Authors: Luan, X., Shang, W., Wang, Y., Yin, W., Jiang, Y., Feng, S., Wang, Y., Liu, M., Zhou, R., Zhang, Z., Wang, F., Cheng, W., Gao, M., Wang, H., Wu, W., Tian, R., Tian, Z., Jin, Y., Jiang, H.W., Zhang, L., Xu, H.E., Zhang, S.
PDB entry 7c8v: Structure of sybody SR4 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-06-03
Authors: Li, T., Yao, H., Cai, H., Qin, W., Li, D.
PDB entry 7c8w: Structure of sybody MR17 in complex with the SARS-CoV-2 S receptor-binding domain (RBD)
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2020-06-03
Authors: Li, T., Cai, H., Yao, H., Qin, W., Li, D.
PDB entry 7c8x: Blasnase-T13A with L-asn
Classification: HYDROLASE
Source organism: Bacillus sp. SUBG0010
Experimental method: X-RAY DIFFRACTION
Resolution: 1.994 Å
Deposited: 2020-06-03
Authors: Lu, F., Ran, T., Jiao, L., Wang, W.
PDB entry 7c8z: Crystal structure of salicylate 5-hydroxylase NagGH (a Rieske non-heme iron-dependent monooxgenase)
Classification: OXIDOREDUCTASE
Source organism: Ralstonia sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-06-04
Authors: Li, D.F., Hou, Y.J.
PDB entry 7c90: Crystal structure of Cytochrome CL from the marine methylotrophic bacterium Methylophaga aminisulfidivorans MPT (Ma-CytcL)
Classification: ELECTRON TRANSPORT
Source organism: Methylophaga aminisulfidivorans MP
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2020-06-04
Authors: Ghosh, S., Dhanasingh, I., Lee, S.H.
PDB entry 7c91: Blasnase-T13A with D-asn
Classification: HYDROLASE
Source organism: Bacillus paralicheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2020-06-04
Authors: Lu, F., Ran, T., Jiao, L., Wang, W.
PDB entry 7c92: Structure of Serratia marcescens chitinase B complexed with compound 6k
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2020-06-04
Authors: Jiang, X., Yuan, P.T.
PDB entry 7c94: Crystal structure of the anti-human podoplanin antibody Fab fragment complex with glycopeptide
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2020-06-04
Authors: Suzuki, K., Nakamura, S., Ogasawara, S., Naruchi, K., Shimabukuro, J., Tukahara, N., Kaneko, M.K., Kato, Y., Murata, T.
PDB entry 7c95: Crystal structure of the anti-human podoplanin antibody Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2020-06-04
Authors: Nakamura, S., Suzuki, K., Ogasawara, S., Naruchi, K., Shimabukuro, J., Tukahara, N., Kaneko, M.K., Kato, Y., Murata, T.
PDB entry 7c96: Avr1d:GmPUB13 U-box
Classification: IMMUNE SYSTEM
Source organism: Glycine soja; Phytophthora sojae (strain P6497)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2020-06-05
Authors: Xing, W., Hu, Q., Zhou, J., Yao, D.
PDB entry 7c97: Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA
Classification: TRANSFERASE/DNA
Source organism: Escherichia coli; Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2020-06-05
Authors: Lin, W., Feng, Y.
PDB entry 7c98: Human DMC1 post-synaptic complexes
Classification: RECOMBINATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2020-06-05
Authors: Luo, S.C., Yeh, H.Y., Chi, P., Ho, M.C., Tsai, M.D.
PDB entry 7c99: Human DMC1 post-synaptic complexes with mismatched dsDNA
Classification: RECOMBINATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2020-06-05
Authors: Luo, S.C., Yeh, H.Y., Chi, P., Ho, M.C., Tsai, M.D.
PDB entry 7c9a: Human RAD51 post-synaptic complexes mutant (V273P, D274G)
Classification: RECOMBINATION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2020-06-05
Authors: Chi, H.Y., Ho, M.C., Tsai, M.D., Luo, S.C., Yeh, H.Y.
PDB entry 7c9b: Crystal structure of dipeptidase-E from Xenopus laevis
Classification: HYDROLASE
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-06-05
Authors: Kumar, A., Singh, R., Makde, R.D.
PDB entry 7c9c: Human DMC1 pre-synaptic complexes
Classification: RECOMBINATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2020-06-05
Authors: Luo, S.C., Yeh, H.Y., Chi, P., Ho, M.C., Tsai, M.D.
PDB entry 7c9i: Human gamma-secretase in complex with small molecule L-685,458
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-06-05
Authors: Yang, G., Zhou, R., Guo, X., Lei, J., Yan, C., Shi, Y.
PDB entry 7c9j: Transglutaminase from Geobacillus stearothermophilus (without C-terminal extension)
Classification: TRANSFERASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-06-06
Authors: Takita, T., Mikami, B., Lei, Y., Jing, Y., Yamada, A., Yasukawa, K.
PDB entry 7c9k: Crystal Structure of E84Q mutant of CntL in complex with SAM
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2020-06-06
Authors: Luo, Z., Zhou, H.
PDB entry 7c9m: The structure of product-bound CntL, an aminobutyrate transferase in staphylopine biosynthesis
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-06-06
Authors: Luo, Z., Zhou, H.
PDB entry 7c9n: Crystal structure of SETDB1 tudor domain in complexed with Compound 1.
Classification: GENE REGULATION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.472 Å
Deposited: 2020-06-06
Authors: Guo, Y., Xiong, L., Mao, X., Yang, S.
PDB entry 7c9o: Crystal structure of DNA-bound CCT/NF-YB/YC complex (HD1CCT/GHD8/OsNF-YC2)
Classification: TRANSCRIPTION
Source organism: Oryza sativa Japonica Group; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2020-06-06
Authors: Shen, C., Liu, H., Guan, Z., Xing, Y., Yin, P.
PDB entry 7c9p: Crystal structure of rice histone-fold dimer GHD8/OsNF-YC2
Classification: TRANSCRIPTION
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-06-06
Authors: Shen, C., Liu, H., Guan, Z., Xing, Y., Yin, P.
PDB entry 7c9q: Crystal structure of Human liver fructose-1,6-bisphoaphatase complex with Mg2+ and AMP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.878 Å
Deposited: 2020-06-07
Authors: Huang, Y., Li, R., Wan, J.
PDB entry 7c9r: STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF THIORHODOVIBRIO STRAIN 970
Classification: PHOTOSYNTHESIS
Source organism: Thiorhodovibrio sp. 970
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2020-06-07
Authors: Tani, K., Kanno, R., Makino, Y., Hall, M., Takenouchi, M., Imanishi, M., Yu, L.-J., Overmann, J., Madigan, M.T., Kimura, Y., Mizoguchi, A., Humbel, B.M., Wang-Otomo, Z.-Y.
PDB entry 7c9s: Echovirus 30 F-particle
Classification: VIRUS
Source organism: Echovirus E30
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-06-07
Authors: Wang, K., Sun, Y., Zhu, L., Li, M., Zhao, X., Cui, L., Zhang, L., Gao, G., Zhai, W., Zhu, F., Rao, Z., Wang, X.
PDB entry 7c9t: Echovirus 30 A-particle
Classification: VIRUS
Source organism: Echovirus E30
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-06-07
Authors: Wang, K., Zhu, L., Sun, Y., Li, M., Zhao, X., Cui, L., Zhang, L., Gao, G., Zhai, W., Zhu, F., Rao, Z., Wang, X.
PDB entry 7c9u: Echovirus 30 E-particle
Classification: VIRUS
Source organism: Echovirus E30
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-06-07
Authors: Wang, K., Zhu, L., Sun, Y., Li, M., Zhao, X., Cui, L., Zhang, L., Gao, G., Zhai, W., Zhu, F., Rao, Z., Wang, X.
PDB entry 7c9v: E30 F-particle in complex with FcRn
Classification: VIRUS
Source organism: Echovirus E30; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-06-07
Authors: Wang, K., Zhu, L., Sun, Y., Li, M., Zhao, X., Cui, L., Zhang, L., Gao, G., Zhai, W., Zhu, F., Rao, Z., Wang, X.
PDB entry 7c9w: E30 F-particle in complex with CD55
Classification: VIRUS
Source organism: Echovirus E30; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-06-07
Authors: Wang, K., Zhu, L., Sun, Y., Li, M., Zhao, X., Cui, L., Zhang, L., Gao, G., Zhai, W., Zhu, F., Rao, Z., Wang, X.
PDB entry 7c9x: Echovirus 3 F-particle
Classification: VIRUS
Source organism: Echovirus E3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-06-08
Authors: Wang, K., Rao, Z., Wang, X.
PDB entry 7c9y: Coxsackievirus B5 (CVB5) F-particle
Classification: VIRUS
Source organism: Coxsackievirus B5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-06-08
Authors: Wang, K., Rao, Z., Wang, X.
PDB entry 7c9z: Coxsackievirus B1 F-particle
Classification: VIRUS
Source organism: Coxsackievirus B1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-06-08
Authors: Feng, R., Wang, K., Rao, Z., Wang, X.
PDB entry 7ca0: Crystal structure of dihydroorotase in complex with 5-fluoroorotic acid from Saccharomyces cerevisiae
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-06-08
Authors: Guan, H.H., Huang, Y.H., Huang, C.Y., Chen, C.J.
PDB entry 7ca1: Crystal structure of dihydroorotase in complex with plumbagin from Saccharomyces cerevisiae
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2020-06-08
Authors: Guan, H.H., Huang, Y.H., Huang, C.Y., Chen, C.J.
PDB entry 7ca2: ENGINEERING THE HYDROPHOBIC POCKET OF CARBONIC ANHYDRASE II
Classification: LYASE(OXO-ACID)
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 1991-07-09
Authors: Nair, S.K., Christianson, D.W.
PDB entry 7ca3: Cryo-EM structure of human GABA(B) receptor bound to the positive allosteric modulator rac-BHFF
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2020-06-08
Authors: Kim, Y., Jeong, E., Jeong, J., Kim, Y., Cho, Y.
PDB entry 7ca4: The Crystal Structure of human Bcl-2-like protein 1 from Biortus
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-06-08
Authors: Wang, F., Lv, Z., Lin, D., Huang, Y.
PDB entry 7ca5: Cryo-EM structure of human GABA(B) receptor in apo state
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2020-06-08
Authors: Kim, Y., Jeong, E., Jeong, J., Kim, Y., Cho, Y.
PDB entry 7ca8: The crystal structure of COVID-19 main protease in complex with an inhibitor Shikonin
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-06-08
Authors: Zhou, X.L., Zhong, F.L., Lin, C., Li, J., Zhang, J.
PDB entry 7cab: Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2020-06-08
Authors: Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.
PDB entry 7cac: SARS-CoV-2 S trimer with one RBD in the open state and complexed with one H014 Fab.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2020-06-08
Authors: Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.
PDB entry 7cad: Mycobacterium smegmatis SugABC complex
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2020-06-08
Authors: Liu, F., Liang, J., Zhang, B., Gao, Y., Yang, X., Hu, T., Rao, Z.
PDB entry 7cae: Mycobacterium smegmatis LpqY-SugABC complex in the resting state
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2020-06-08
Authors: Liu, F., Liang, J., Zhang, B., Gao, Y., Yang, X., Hu, T., Rao, Z.
PDB entry 7caf: Mycobacterium smegmatis LpqY-SugABC complex in the pre-translocation state
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2020-06-08
Authors: Liu, F., Liang, J., Zhang, B., Gao, Y., Yang, X., Hu, T., Rao, Z.
PDB entry 7cag: Mycobacterium smegmatis LpqY-SugABC complex in the catalytic intermediate state
Classification: TRANSPORT PROTEIN
Source organism: Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2020-06-08
Authors: Liu, F., Liang, J., Zhang, B., Gao, Y., Yang, X., Hu, T.
PDB entry 7cah: The interface of H014 Fab binds to SARS-CoV-2 S
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-06-08
Authors: Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Rao, Z., wang, Y., Qin, C., Wang, X.
PDB entry 7cai: SARS-CoV-2 S trimer with two RBDs in the open state and complexed with two H014 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2020-06-08
Authors: Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.
PDB entry 7caj: Crystal structure of SETDB1 Tudor domain in complexed with Compound 2.
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.198 Å
Deposited: 2020-06-08
Authors: Guo, Y.P., Liang, X., Xin, M., Luyi, H., Chengyong, W., Yang, S.Y.
PDB entry 7cak: SARS-CoV-2 S trimer with three RBD in the open state and complexed with three H014 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2020-06-08
Authors: Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.
PDB entry 7cal: Cryo-EM Structure of the Hyperpolarization-Activated Inwardly Rectifying Potassium Channel KAT1 from Arabidopsis
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-06-09
Authors: Li, S.Y., Yang, F., Sun, D.M., Zhang, Y., Zhang, M.G., Zhou, P., Liu, S.L., Zhang, Y.N., Zhang, L.H., Tian, C.L.
PDB entry 7cam: SARS-CoV-2 main protease (Mpro) apo structure (space group P212121)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2020-06-09
Authors: Wang, Y.C., Yang, C.S., Hou, M.H., Tsai, C.L., Chou, Y.Z., Chen, Y.
PDB entry 7can: Structure of sybody MR17-K99Y in complex with the SARS-CoV-2 S Receptor-binding domain (RBD)
Classification: PROTEIN BINDING
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2020-06-09
Authors: Li, T., Yao, H., Cai, H., Qin, W., Li, D.
PDB entry 7cao: Crystal structure of red chromoprotein from Olindias formosa
Classification: FLUORESCENT PROTEIN
Source organism: Olindias formosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-06-09
Authors: Nakashima, R., Zhai, L., Ike, Y., Matsudz, T., Nagai, T.
PDB entry 7cap: Cyclic Lys48-linked triubiquitin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2020-06-09
Authors: Hiranyakorn, M., Yanaka, S., Satoh, T., Wilasri, T., Jityuti, B., Yagi-Utsumi, T., Kato, K.
PDB entry 7caq: Versatile cis-prenyltransferase MM_0014 from Methanosarcina mazei (crystal type: substrate-free)
Classification: TRANSFERASE
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2020-06-10
Authors: Unno, H., Hemmi, H.
PDB entry 7car: Versatile cis-prenyltransferase MM_0014 from Methanosarcina mazei (crystal type: free+IPP)
Classification: TRANSFERASE
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2020-06-10
Authors: Unno, H., Hemmi, H.
PDB entry 7cas: Versatile cis-prenyltransferase MM_0014 from Methanosarcina mazei (crystal type: free+PPi)
Classification: TRANSFERASE
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2020-06-10
Authors: Unno, H., Hemmi, H.
PDB entry 7cat: The NADPH binding site on beef liver catalase
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1984-11-15
Authors: Murthy, M.R.N., Reid III, T.J., Sicignano, A., Tanaka, N., Fita, I., Rossmann, M.G.
PDB entry 7cav: Versatile cis-prenyltransferase MM_0014 from Methanosarcina mazei (crystal type: co-FG+DMAPP)
Classification: TRANSFERASE
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2020-06-10
Authors: Unno, H., Hemmi, H.
PDB entry 7caw: Crystal structure of bacterial reductase
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.876 Å
Deposited: 2020-06-10
Authors: Kim, Y., Lee, W.C.
PDB entry 7cax: Crystal structure of bacterial reductase
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.846 Å
Deposited: 2020-06-10
Authors: Kim, Y., Lee, W.C.
PDB entry 7cay: Crystal Structure of Lon N-terminal domain protein from Xanthomonas campestris
Classification: PROTEIN BINDING
Source organism: Xanthomonas campestris pv. campestris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-06-10
Authors: Singh, R., Sharma, B., Deshmukh, S., Kumar, A., Makde, R.D.
PDB entry 7caz: Crystal structure of bacterial reductase
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2020-06-10
Authors: Kim, Y., Lee, W.C.
PDB entry 7cb0: The apo 6-phosphogluconate dehydrogenase from Staphylococcus aureus (strain Newman)
Classification: CYTOSOLIC PROTEIN
Source organism: Staphylococcus aureus (strain Newman)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2020-06-10
Authors: Wang, H., Wang, M., Sun, H.
PDB entry 7cb1: Structure of Serratia marcescens chitinase B complexed with compound 6q
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2020-06-10
Authors: Jiang, X., Yuan, P.T.
PDB entry 7cb2: The 6-phosphogluconate dehydrogenase (NADP-bound) from Staphylococcus aureus
Classification: CYTOSOLIC PROTEIN
Source organism: Staphylococcus aureus (strain Newman)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-06-10
Authors: Wang, H., Wang, M., Sun, H.
PDB entry 7cb3: Crystal structure of type III polyketide synthase from Mycobacterium marinum
Classification: TRANSFERASE
Source organism: Mycobacterium marinum (strain ATCC BAA-535 / M)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2020-06-10
Authors: Pratap, S., Kant, A., Saxena, P., Krishnan, V.
PDB entry 7cb4: Crystal structures of of BlAsnase
Classification: HYDROLASE
Source organism: Bacillus paralicheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2020-06-10
Authors: Lu, F., Ran, T., Jiao, L., Wang, W.
PDB entry 7cb5: The 6-phosphogluconate dehydrogenase from Staphylococcus aureus (6-phosphogluconate bound)
Classification: CYTOSOLIC PROTEIN
Source organism: Staphylococcus aureus (strain Newman)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2020-06-10
Authors: Wang, H., Wang, M., Sun, H.
PDB entry 7cb6: The silver-bound 6-phosphogluconate dehydrogenase from Staphylococcus aureus (strain Newman)
Classification: CYTOSOLIC PROTEIN
Source organism: Staphylococcus aureus (strain Newman)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2020-06-10
Authors: Wang, H., Wang, M., Sun, H.
PDB entry 7cb7: 1.7A resolution structure of SARS-CoV-2 main protease (Mpro) in complex with broad-spectrum coronavirus protease inhibitor GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2020-06-10
Authors: Wang, Y.C., Yang, C.S., Hou, M.H., Tsai, C.L., Chou, Y.Z., Chen, Y., Hung, M.C.
PDB entry 7cb8: Structure of a FIC-domain protein from Mycobacterium marinum in complex with CDP
Classification: TOXIN
Source organism: Mycobacterium marinum (strain ATCC BAA-535 / M)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-06-11
Authors: Kumar, S., Singh, A., Penmatsa, A., Surolia, A.
PDB entry 7cb9: CYP76AH1/miltiradiene from Salvia miltiorrhiza
Classification: PLANT PROTEIN
Source organism: Salvia miltiorrhiza
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-06-11
Authors: Chang, Z., Chao, S., Mingyue, G.
PDB entry 7cba: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with isorhamnetin and citrate
Classification: HYDROLASE
Source organism: Naja atra
Experimental method: X-RAY DIFFRACTION
Resolution: 2.901 Å
Deposited: 2020-06-11
Authors: Lin, I.J., Lin, C.C., Wu, W.G.
PDB entry 7cbb: Crystal structure of SbnC in the biosynthesis of staphyloferrin B
Classification: BIOSYNTHETIC PROTEIN
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-06-11
Authors: Tang, J., Ju, Y., Zhou, H.
PDB entry 7cbc: Crystal structure of a de novo designed switch protein caging a hemagglutinin binder
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-06-11
Authors: Lee, H., Oh, B.-H., Baker, D.
PDB entry 7cbd: Catalytic domain of Cellulomonas fimi Cel6B
Classification: HYDROLASE
Source organism: Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-06-12
Authors: Nakamura, A., Ishiwata, D., Visootsat, A., Uchiyama, T., Mizutani, K., Kaneko, S., Murata, T., Igarashi, K., Iino, R.
PDB entry 7cbe: Crystal structure of Homoserine O-succinyltransferase from Escherichia coli K-12
Classification: TRANSFERASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-06-12
Authors: Sagong, H.-Y., Kim, K.-J.
PDB entry 7cbf: Crystal structure of benzophenone synthase from Garcinia mangostana L. pericarps reveals basis for substrate specificity and catalysis
Classification: TRANSFERASE
Source organism: Garcinia mangostana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2020-06-12
Authors: Songsiriritthigul, C., Nualkaew, N., Chen, C.-J.
PDB entry 7cbg: Crystal structure of threonyl-tRNA synthetase (ThrRS) from Salmonella enterica in complex with an inhibitor
Classification: LIGASE/INHIBITOR
Source organism: Salmonella enterica subsp. enterica serovar Cubana str. 76814
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-06-12
Authors: Guo, J., Chen, B., Zhou, H.
PDB entry 7cbh: Crystal structure of threonyl-tRNA synthetase (ThrRS) from Salmonella enterica in complex with an inhibitor
Classification: LIGASE/INHIBITOR
Source organism: Salmonella enterica subsp. enterica serovar Cubana str. 76814
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-06-12
Authors: Guo, J., Chen, B., Zhou, H.
PDB entry 7cbi: Crystal structure of threonyl-tRNA synthetase (ThrRS) from Salmonella enterica in complex with an inhibitor
Classification: LIGASE/INHIBITOR
Source organism: Salmonella enterica subsp. enterica serovar Cubana str. 76814
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2020-06-12
Authors: Guo, J., Chen, B., Zhou, H.
PDB entry 7cbj: Crystal structure of PDE4D catalytic domain in complex with compound 36
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-06-12
Authors: Zhang, X.L., Xu, Y.C.
PDB entry 7cbk: Structure of Human Neutrophil Elastase Ecotin complex
Classification: LYASE
Source organism: Escherichia coli K-12; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2020-06-12
Authors: Jobichen, C., Sivaraman, J.
PDB entry 7cbl: Cryo-EM structure of the flagellar LP ring from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-06-12
Authors: Tan, J.X., Chang, S.H., Wang, X.F., Xu, C.H., Zhou, Y., Zhang, X., Zhu, Y.Q.
PDB entry 7cbm: Cryo-EM structure of the flagellar distal rod with partial hook from Salmonella
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-06-12
Authors: Tan, J.X., Chang, S.H., Wang, X.F., Xu, C.H., Zhou, Y., Zhang, X., Zhu, Y.Q.
PDB entry 7cbn: Crystal structure of beta-N-acetylhexosaminidase Am0868 from Akkermansia muciniphila
Classification: HYDROLASE
Source organism: Akkermansia muciniphila (strain ATCC BAA-835 / Muc)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-06-13
Authors: Xu, W., Wang, M., Zhang, M.
PDB entry 7cbo: Crystal structure of beta-N-acetylhexosaminidase Am0868 from Akkermansia muciniphila in complex with GlcNAc
Classification: HYDROLASE
Source organism: Akkermansia muciniphila (strain ATCC BAA-835 / Muc)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-06-13
Authors: Xu, W., Wang, M., Zhang, M.
PDB entry 7cbp: CryoEM structure of Zika virus with Fab at 4.1 Angstrom
Classification: VIRUS
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2020-06-13
Authors: Tyagi, A., Ahmed, T., Shi, J., Bhushan, S.
PDB entry 7cbq: Crystal structure of PDE4D catalytic domain in complex with Apremilast
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2020-06-13
Authors: Zhang, X.L., Xu, Y.C.
PDB entry 7cbr: Blasnase-T13A with D-asn
Classification: HYDROLASE
Source organism: Bacillus paralicheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-06-13
Authors: Lu, F., Ran, T., Jiao, L., Wang, W.
PDB entry 7cbs: Crystal structure of SpaB basal pilin from Lactobacillus rhamnosus GG
Classification: CELL ADHESION
Source organism: Lactobacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2020-06-13
Authors: Megta, A.K., Pratap, S., Kant, A., Krishnan, V.
PDB entry 7cbt: The crystal structure of SARS-CoV-2 main protease in complex with GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.346 Å
Deposited: 2020-06-13
Authors: Shi, Y., Peng, G.
PDB entry 7cbu: Blasnase-T13A with L-Asp
Classification: HYDROLASE
Source organism: Bacillus paralicheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-06-14
Authors: Lu, F., Ran, T., Jiao, L., Wang, W.
PDB entry 7cbv: Crystal structure of the transcriptional regulator PadR from Bacillus subtilis (space group H32)
Classification: TRANSCRIPTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-06-14
Authors: Park, S.C., Song, W.S., Yoon, S.I.
PDB entry 7cbw: Blasnase-T13A with D-asn
Classification: HYDROLASE
Source organism: Bacillus paralicheniformis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.978 Å
Deposited: 2020-06-15
Authors: Lu, F., Ran, T., Jiao, L., Wang, W.
PDB entry 7cbx: Crystal structure of MAP2K7 complexed with a covalent inhibitor 12
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.061 Å
Deposited: 2020-06-15
Authors: Kinoshita, T., Murakawa, Y.
PDB entry 7cby: Structure of FOXG1 DNA binding domain bound to DBE2 DNA site
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.646 Å
Deposited: 2020-06-15
Authors: Dai, S.Y., Li, J., Chen, Y.H.
PDB entry 7cbz: Crystal structure of T2R-TTL-A31 complex
Classification: CELL CYCLE/INHIBITOR
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2020-06-15
Authors: Yang, J.H., Yan, W.
PDB entry 7cc2: Strategic design of catalytic lysine-targeting reversible covalent BCR-ABL Inhibitors
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.723 Å
Deposited: 2020-06-16
Authors: Anantharajan, J., Baburajendran, N.
PDB entry 7cc3: Versatile cis-prenyltransferase MM_0014 from Methanosarcina mazei (crystal type: co-FG)
Classification: TRANSFERASE
Source organism: Methanosarcina mazei Go1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2020-06-16
Authors: Unno, H., Hemmi, H.
PDB entry 7cc4: A biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast Pseudozyma antarctica
Classification: HYDROLASE
Source organism: Pseudozyma antarctica
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-06-16
Authors: Suzuki, K., Watanabe, T., Kitamoto, H.
PDB entry 7cc7: Tetratricopeptide repeat (TPR) domain of protein tyrosine phosphatase-interacting protein 51 (PTPIP51)
Classification: LIPID TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-06-16
Authors: Lee, B.I., Park, T.H., Yeo, H.K.