LiteFold/PDB huggingface dataset:
PDB entry 8ri3: Crystal structure of transplatin/B-DNA adduct obtained upon 7 days of soaking
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-12-18
Authors: Tito, G., Troisi, R., Ferraro, G., Sica, F., Merlino, A.
PDB entry 8ri4: Crystal structure of the SARS-CoV-2 Main Protease inhibited by (2-methylsulfanyl-6,7-dihydro-[1,4]dioxino[2,3-f]benzimidazol-3-yl)-(p-tolyl)methanone
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-18
Authors: Charton, J., Deprez, B., Hanoulle, X.
PDB entry 8ri5: Crystal structure of transplatin/B-DNA adduct obtained upon 48 h of soaking
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.415 Å
Deposited: 2023-12-18
Authors: Tito, G., Troisi, R., Ferraro, G., Sica, F., Merlino, A.
PDB entry 8ri6: Beta-galactosidase (LacZ) purified from E. coli.
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.06 Å
Deposited: 2023-12-18
Authors: Hardenbrook, N.J., Sheng, Y., Zhang, P.
PDB entry 8ri7: Beta-galactosidase (LacZ) in complex with glycosyrin from Pseudomonas syringae.
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.93 Å
Deposited: 2023-12-18
Authors: Hardenbrook, N.J., Sheng, Y., Zhang, P.
PDB entry 8ri8: Beta-galactosidase (LacZ) in complex with synthetic glycosyrin.
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.42 Å
Deposited: 2023-12-18
Authors: Hardenbrook, N.J., Sheng, Y., Zhang, P.
PDB entry 8ri9: Late alpha-Synuclein fibril structure from liquid-liquid phase separations.
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-18
Authors: De Simone, A., Barritt, J.D., Chen, S., Cascella, R., Cecchi, C., Bigi, A., Jarvis, J.A., Chiti, F., Dobson, C.M., Fusco, G.
PDB entry 8ria: BmrA E504-100uMATPMg-IF
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-12-18
Authors: Gobet, A., Zarkadas, E., Schoehn, G., Falson, P., Chaptal, V.
PDB entry 8rib: N-terminal domain of Trypanosoma brucei PEX14 in complex with a pyrazolo-pyrazolo[4,3-c]pyridin-3-yl compound showing a novel binding pose
Classification: SIGNALING PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 1.126 Å
Deposited: 2023-12-18
Authors: Napolitano, V., Janna Olmos, J., Popowicz, G.M., Dubin, G.
PDB entry 8ric: Crystallographic structure of oligosaccharide dehydrogenase from Pycnoporus cinnabarinus bound to Sinapic Acid, tetragonal crystal
Classification: OXIDOREDUCTASE
Source organism: Trametes cinnabarina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-12-18
Authors: Savino, C., Sciara, G., Gugole, E., Vallone, B., Fata, F., Bulfaro, G., Costanzo, A., Montemiglio, L.C.
PDB entry 8rid: Crystallographic structure of oligosaccharide dehydrogenase from Pycnoporus cinnabarinus bound to Sinapic Acid, orthorhombic crystal
Classification: OXIDOREDUCTASE
Source organism: Trametes cinnabarina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-12-18
Authors: Savino, C., Sciara, G., Gugole, E., Vallone, B., Fata, F., Bulfaro, G., Costanzo, A., Montemiglio, L.C.
PDB entry 8rie: Crystallographic structure of oligosaccharide dehydrogenase from Pycnoporus cinnabarinus bound to Guaiacol, orthorhombic crystal
Classification: OXIDOREDUCTASE
Source organism: Trametes cinnabarina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-12-18
Authors: Savino, C., Sciara, G., Gugole, E., Vallone, B., Fata, F., Bulfaro, G., Costanzo, A., Montemiglio, L.C.
PDB entry 8rif: Cryo-EM structure of the MCM double hexamer loaded onto dsDNA.
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2023-12-18
Authors: Miller, T.C.R., Lim, C.T., Diffley, J.F.X., Costa, A.
PDB entry 8rig: Cryo-EM structure of an MCM helicase single hexamer loaded onto dsDNA.
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-12-18
Authors: Miller, T.C.R., Lim, C.T., Diffley, J.F.X., Costa, A.
PDB entry 8rih: Crystal structure of the Saccharomyces cerevisiae URH1p riboside hydrolase
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-12-18
Authors: Degano, M., Carriles, A.A.
PDB entry 8rii: Structure of E166A BlaC from Mycobacterium tuberculosis at pH 6.5
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-18
Authors: Sun, J., Bruenle, S., Ubbink, M.
PDB entry 8rij: Discovery of the first orally bioavailable ADAMTS7 inhibitor BAY-9835
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-12-18
Authors: Schafer, M., Meibom, D., Wasnaire, P., Beyer, K., Broehl, A., Cancho-Grande, Y., Elowe, N., Henninger, K., Johannes, S., Jungmann, N., Krainz, T., Lindner, N., Maassen, S., MacDonald, B., Menshykau, D., Mittendorf, J., Sanchez, G., Stefan, E., Torge, A., Xing, Y., Zubov, D.
PDB entry 8rik: Microtubule-associated kinesin-1 tail complex bound to ADP, single-headed state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-18
Authors: Atherton, J., Chegkazi, M.S., Steiner, R.A.
PDB entry 8ril: Human RAD52 closed ring conformation
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-12-18
Authors: Liang, C.C., West, S.C.
PDB entry 8rim: Arginase 2 in complex with inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-19
Authors: Petersen, J.
PDB entry 8rin: Crystal structure of EccC5 DUF domain of Mycobacterium tuberculosis
Classification: UNKNOWN FUNCTION
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-12-19
Authors: Ceballos-Zuniga, F., Perez-Dorado, I.
PDB entry 8rio: Beta-keto acid cleavage enzyme from Paracoccus denitrificans
Classification: LYASE
Source organism: Paracoccus denitrificans PD1222
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-12-19
Authors: Marchal, D.G., Zarzycki, J., Erb, T.J.
PDB entry 8rip: Beta-keto acid cleavage enzyme from Paracoccus denitrificans with bound malonate and Coenzyme A
Classification: LYASE
Source organism: Paracoccus denitrificans PD1222
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-12-19
Authors: Marchal, D.G., Zarzycki, J., Erb, T.J.
PDB entry 8rir: S103A mutant of the BTB domain of ZBTB8A from Xenopus laevis
Classification: TRANSCRIPTION
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.72 Å
Deposited: 2023-12-19
Authors: Coste, F., Suskiewicz, M.J.
PDB entry 8ris: Computationally redesigend variant of Pyrrolysyl-tRNA Synthetase (Y306A)
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-12-19
Authors: Oberdorfer, G., Moser, M., Stoll, D.
PDB entry 8rit: Dimeric mutant S103D of the BTB domain of ZBTB8A from Xenopus laevis
Classification: TRANSCRIPTION
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.75 Å
Deposited: 2023-12-19
Authors: Coste, F., Suskiewicz, M.J.
PDB entry 8riu: Crystal structure of the F420-reducing carbon monoxide dehydrogenase component from the ethanotroph Candidatus Ethanoperedens thermophilum
Classification: OXIDOREDUCTASE
Source organism: Candidatus Methanoperedenaceae archaeon GB50
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-12-19
Authors: Lemaire, O.N., Wagner, T.
PDB entry 8riv: T2R-TTL-1-K08 complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-12-19
Authors: Boiarska, Z., Homer, J.A., Steinmetz, M.O., Moses, J.E., Prota, A.E.P.
PDB entry 8riw: T2R-TTL-1-L01 complex
Classification: CELL CYCLE
Source organism: Bos taurus; Gallus gallus; Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2023-12-19
Authors: Prota, A.E.P., Boiarska, Z., Homer, J.A., Steinmetz, M.O., Moses, J.E.
PDB entry 8rix: Crystal structure of chloroplast FtsY from Arabidopsis thaliana in complex with the alarmone ppGpp
Classification: PROTEIN TRANSPORT
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-12-19
Authors: Czech, L., Bange, G.
PDB entry 8riy: Human NUDT5 with ibrutinib derivative
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.288 Å
Deposited: 2023-12-19
Authors: Balikci-Akil, E., Elkins, J.M., Huber, K.V.M.
PDB entry 8riz: Microtubule-associated kinesin-1 tail complex bound to ADP, two-headed state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-19
Authors: Atherton, J., Chegkazi, M.S., Steiner, R.A.
PDB entry 8rj0: Crystal structure of mutant aspartase from Bacillus sp. YM55-1 in the closed loop conformation
Classification: LYASE
Source organism: Bacillus sp. YM55-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-19
Authors: Capra, N., Thunnissen, A.M.W.H., Janssen, D.B.
PDB entry 8rj1: Crystal structure of mutant aspartase from Caenibacillus caldisaponilyticus in the closed loop conformation
Classification: LYASE
Source organism: Caenibacillus caldisaponilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-12-19
Authors: Capra, N., Thunnissen, A.M.W.H., Janssen, D.B.
PDB entry 8rj2: Crystal structure of carbonic anhydrase II with N-butyl-4-chloro-2-(cyclohexylsulfanyl)-5-sulfamoylbenzamide
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2023-12-19
Authors: Smirnov, A., Manakova, E.N., Grazulis, S.
PDB entry 8rj3: Human RAD52 open ring conformation
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-19
Authors: Liang, C.C., West, S.C.
PDB entry 8rj4: E. coli adenylate kinase in complex with two ADP molecules and Mg2+ as a result of enzymatic AP4A hydrolysis
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2023-12-20
Authors: Tischlik, S., Ronge, P., Wolf-Watz, M., Sauer-Eriksson, A.E.
PDB entry 8rj5: P1-15 T-cell Receptor bound to HLA A*2402-NF9 pMHC complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2023-12-20
Authors: Wall, A., Sewell, A.K., Motozono, C., Rizkallah, P.J., Fuller, A.
PDB entry 8rj6: E. coli adenylate kinase in complex with ATP and AMP and Mg2+ as a result of enzymatic AP4A hydrolysis.
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-20
Authors: Tischlik, S., Ronge, P., Wolf-Watz, M., Sauer-Eriksson, A.E.
PDB entry 8rj7: The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.29
Classification: ANTIVIRAL PROTEIN
Source organism: Camelus dromedarius; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-20
Authors: Casasnovas, J.M., Fernandez, L.A., Silva, K.
PDB entry 8rj8: CytK nanopore mutant
Classification: TRANSLATION
Source organism: Bacillus cereus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.32 Å
Deposited: 2023-12-20
Authors: Whittaker, J.J., Sauciuc, A., Guskov, A.
PDB entry 8rj9: E. coli adenylate kinase Asp84Ala variant in complex with two ADP molecules as a result of enzymatic AP4A hydrolysis.
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-12-20
Authors: Tischlik, S., Ronge, P., Wolf-Watz, M., Sauer-Eriksson, A.E.
PDB entry 8rja: Crystal structure of the F420-reducing formylmethanofuran dehydrogenase complex from the ethanotroph Candidatus Ethanoperedens thermophilum
Classification: OXIDOREDUCTASE
Source organism: Candidatus Methanoperedenaceae archaeon GB50
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-12-20
Authors: Lemaire, O.N., Wagner, T.
PDB entry 8rjb: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
Classification: RIBOSOME
Source organism: Bos taurus; Canis lupus familiaris; Oryctolagus; Oryctolagus cuniculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69243 Å
Deposited: 2023-12-20
Authors: Lewis, A.J.O., Hegde, R.S.
PDB entry 8rjc: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Classification: RIBOSOME
Source organism: Bos taurus; Canis lupus familiaris; Oryctolagus; Oryctolagus cuniculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.90061 Å
Deposited: 2023-12-20
Authors: Lewis, A.J.O., Hegde, R.S.
PDB entry 8rjd: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
Classification: RIBOSOME
Source organism: Bos taurus; Canis lupus familiaris; Oryctolagus; Oryctolagus cuniculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78574 Å
Deposited: 2023-12-20
Authors: Lewis, A.J.O., Hegde, R.S.
PDB entry 8rjf: TadA/CpaF with ADP
Classification: MOTOR PROTEIN
Source organism: Caulobacter vibrioides NA1000
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-21
Authors: Hohl, M., Low, H.
PDB entry 8rjh: HLA A*2402-NF9_6F pMHC complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-12-21
Authors: Wall, A., Sewell, A.K., Motozono, C., Rizkallah, P.J., Fuller, A.
PDB entry 8rji: HLA A*2402-NF9_5R pMHC complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-21
Authors: Wall, A., Motozono, C., Sewell, A.K., Rizkallah, P.J., Fuller, A.
PDB entry 8rjj: HCV E1/E2 homodimer complex
Classification: VIRAL PROTEIN
Source organism: Hepacivirus hominis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2023-12-21
Authors: Augestad, E.H., Olesen, C.H., Groenberg, C., Soerensen, A., Velazquez-Moctezuma, R., Fanalista, M., Bukh, J., Wang, K., Gourdon, P., Prentoe, J.
PDB entry 8rjk: Pseudoatomic model of a second-order Sierpinski triangle formed by the citrate synthase from Synechococcus elongatus
Classification: TRANSFERASE
Source organism: Synechococcus elongatus PCC 7942 = FACHB-805
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.91 Å
Deposited: 2023-12-21
Authors: Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.
PDB entry 8rjl: Structure of a first order Sierpinski triangle formed by the H369R mutant of the citrate synthase from Synechococcus elongatus
Classification: TRANSFERASE
Source organism: Synechococcus elongatus PCC 7942 = FACHB-805
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2023-12-21
Authors: Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.
PDB entry 8rjm: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in its Pfr state (I0a).
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rjn: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in its Pfr state (I0b).
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rjo: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I1 intermediate state.
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rjp: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I2 intermediate state.
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rjq: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I3 intermediate state.
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rjr: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I4 intermediate state.
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rjs: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I5 intermediate state.
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rjt: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I6 intermediate state.
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rju: Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I7 intermediate state.
Classification: SIGNALING PROTEIN
Source organism: Agrobacterium fabrum str. C58
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-12-21
Authors: Sauthof, L., Schmidt, A., Szczepek, M., Brewster, A.S., Kern, J.F., Scheerer, P.
PDB entry 8rjv: Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the covalent inhibitor GUE-3778 (compound 12 in publication)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-12-21
Authors: Strater, N., Claff, T., Sylvester, K., Mueller, C.E., Guetschow, M., Useini, A.
PDB entry 8rjw: Human RAD52 open ring - ssDNA complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-12-21
Authors: Liang, C.C., West, S.C.
PDB entry 8rjx: Solution structure of osmoregulator OsmY from E. coli.
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: SOLUTION NMR
Deposited: 2023-12-22
Authors: Iyer, A., Luo, Y., le Paige, U.B.A., van Ingen, H.
PDB entry 8rjy: Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the covalent inhibitor GUE-3899 (compound 58 in publication)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2023-12-22
Authors: Strater, N., Claff, T., Sylvester, K., Mueller, C.E., Guetschow, M., Useini, A.
PDB entry 8rjz: Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the non-covalent inhibitor GUE-3801 (compound 80 in publication)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-12-22
Authors: Strater, N., Claff, T., Sylvester, K., Mueller, C.E., Guetschow, M., Useini, A.
PDB entry 8rk0: HCV E1/E2 homodimer complex, ectodomain
Classification: VIRAL PROTEIN
Source organism: Hepacivirus hominis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2023-12-22
Authors: Augestad, E.H., Olesen, C.H., Groenberg, C., Soerensen, A., Velazquez-Moctezuma, R., Fanalista, M., Bukh, J., Wang, K., Gourdon, P., Prentoe, J.
PDB entry 8rk1: Crystal structure of FutA bound to Fe(III) solved by neutron diffraction
Classification: METAL BINDING PROTEIN
Source organism: Prochlorococcus marinus subsp. pastoris str. CCMP1986
Experimental method: NEUTRON DIFFRACTION
Resolution: 2.095 Å
Deposited: 2023-12-22
Authors: Bolton, R., Tews, I.
PDB entry 8rk2: Human Replication protein A (RPA; trimeric core) - ssDNA complex
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-22
Authors: Liang, C.C., West, S.C.
PDB entry 8rk3: Bacteriophage JBD30 baseplate - composite structure
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.46 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rk4: Receptor binding protein of bacteriophage JBD30 computed with C3 symmetry
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.74 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rk5: Tail fibres of bacteriophage JBD30
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.54 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rk6: Baseplate core of bacteriophage JBD30 computed in C3 symmetry
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rk7: Baseplate of bacteriophage JBD30 computed in C3 symmetry
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.46 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rk8: Tail of bacteriophage JBD30 computed in C6 symmetry
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rk9: Stopper protein of bacteriophage JBD30 computed in C6 symmetry
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rka: Connector complex of empty bacteriophage JBD30 particle computed in C12 symmetry
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rkb: Connector complex of bacteriophage JBD30 computed in C12 symmetry
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rkc: Capsid of bacteriophage JBD30 decorated with minor capsid protein trimers computed in I4 symmetry
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-12-23
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rkd: TadA/CpaF with AMPPNP
Classification: MOTOR PROTEIN
Source organism: Caulobacter vibrioides NA1000
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-12-24
Authors: Hohl, M., Low, H.
PDB entry 8rke: Crystal structure of the complete N-terminal region of human ZP2 (hZP2-N1N2N3)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-12-25
Authors: Fahrenkamp, D., de Sanctis, D., Jovine, L.
PDB entry 8rkf: Crystal structure of the ZP-N1 and ZP-N2 domains of human ZP2 (hZP2-N1N2)
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-12-25
Authors: Dioguardi, E., Stsiapanava, A., de Sanctis, D., Jovine, L.
PDB entry 8rkg: Crystal structure of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3)
Classification: CELL ADHESION
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-12-25
Authors: Nishio, S., de Sanctis, D., Jovine, L.
PDB entry 8rkh: Crystal structure of the ZP-N2 and ZP-N3 domains of mouse ZP2 (mZP2-N2N3)
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-25
Authors: Fahrenkamp, D., de Sanctis, D., Jovine, L.
PDB entry 8rki: Molecular basis of ZP3/ZP1 heteropolymerization: crystal structure of a native vertebrate egg coat filament fragment
Classification: STRUCTURAL PROTEIN
Source organism: Oryzias latipes
Experimental method: X-RAY DIFFRACTION
Resolution: 4.2 Å
Deposited: 2023-12-25
Authors: Wiseman, B., Zamora-Caballero, S., de Sanctis, D., Yasumasu, S., Jovine, L.
PDB entry 8rkl: TadA/CpaF nucleotide free
Classification: MOTOR PROTEIN
Source organism: Caulobacter vibrioides NA1000
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-26
Authors: Hohl, M., Low, H.
PDB entry 8rkn: Bacteriophage JBD30 capsid
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-12-27
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rko: Bacteriophage JBD30 empty particle capsid
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2023-12-27
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rkp: Cytochrome c prime from Hydrogenophilus thermoluteolus: Ferrous recombinant native with bound NO
Classification: ELECTRON TRANSPORT
Source organism: Hydrogenophilus thermoluteolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-12-27
Authors: Fujii, S., Hough, M.A.
PDB entry 8rkq: Structure of human DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE (ALDH4A1) complexed with the molecular tweezer CLR01
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-12-28
Authors: Porfetye, A.T., Vetter, I.R.
PDB entry 8rkr: Structure of human DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE (ALDH4A1) complexed with a monophosphate-tweezer
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-12-28
Authors: Porfetye, A.T., Vetter, I.R.
PDB entry 8rks: Structure of VPS29-VPS35 bound to the LFa motif R21 of Fam21.
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-12-30
Authors: Romano-Moreno, M., Astorga-Simon, E.N., Rojas, A.L., Hierro, A.
PDB entry 8rkt: Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement map
Classification: DNA BINDING PROTEIN
Source organism: Scytonema hofmannii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å
Deposited: 2023-12-30
Authors: Tenjo-Castano, F., Mesa, P., Montoya, G.
PDB entry 8rku: Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsC domain local-refinement map
Classification: DNA BINDING PROTEIN
Source organism: Scytonema hofmannii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-12-30
Authors: Tenjo-Castano, F., Mesa, P., Montoya, G.
PDB entry 8rkv: Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsB domain local-refinement map
Classification: DNA BINDING PROTEIN
Source organism: Scytonema hofmannii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-12-30
Authors: Tenjo-Castano, F., Mesa, P., Montoya, G.
PDB entry 8rkx: Procapsid of bacteriophage JBD30 computed in I4 symmetry
Classification: VIRUS
Source organism: Pseudomonas phage JBD30
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2023-12-30
Authors: Valentova, L., Fuzik, T., Plevka, P.
PDB entry 8rky: X-ray structure of the drug binding domain of AlbA in complex with the KMR-14-14 compound of the pyrrolobenzodiazepines class
Classification: DNA BINDING PROTEIN
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-01-01
Authors: Di Palma, M., Surani, Y.M., Rahman, K.M., Steiner, R.A.
PDB entry 8rkz: Crystal structure of a cysteine hydrolase from Phytophthora infestans
Classification: HYDROLASE
Source organism: Phytophthora infestans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-01-02
Authors: Altegoer, F., Weiland, P., Bange, G.
PDB entry 8rl0: Crystal structure of a cysteine hydrolase from Ustilago maydis
Classification: HYDROLASE
Source organism: Ustilago maydis 521
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2024-01-02
Authors: Altegoer, F., Christ, M., Bange, G.
PDB entry 8rl2: Human pre-60S - State 5
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-01-02
Authors: Thoms, M., Denk, T., Beckmann, R.
PDB entry 8rl5: DNA helicase RECQL5 in complex with homo Di-Gluebody G5-006
Classification: HYDROLASE
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rl6: DNA helicase RECQL5 in complex with homo Di-Gluebody G5-006 - RECQL5 local refinement
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rl7: SPNS2 in complex with homo Di-Gluebody GbD12
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Li, H., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rl8: SPNS2 in complex with homo Di-Gluebody GbD12 - SPNS2 local refinement
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rl9: RECQL5:sfGFP hetero dimer assembled by Di-Gluebody
Classification: HYDROLASE
Source organism: Aequorea victoria; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Fairhead, M., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rla: RECQL5:sfGFP hetero dimer assembled by Di-Gluebody - RECQL5 local refinement
Classification: HYDROLASE
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rlb: RECQL5:sfGFP hetero dimer assembled by Di-Gluebody - sfGFP local refinement
Classification: HYDROLASE
Source organism: Aequorea victoria; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Fairhead, M., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rlc: SPNS2:sfGFP hetero dimer assembled by Di-Gluebody
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Li, H., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rld: SPNS2:sfGFP hetero dimer assembled by Di-Gluebody - SPNS2 local refinement
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rle: SPNS2:sfGFP hetero dimer assembled by Di-Gluebody - sfGFP local refinement
Classification: HYDROLASE
Source organism: Aequorea victoria; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2024-01-02
Authors: Yi, G., Ye, M., Mamalis, D., Sauer, D.B., von Delft, F., Davis, B.G., Gilbert, R.J.C.
PDB entry 8rlf: Hydrogenated hen egg-white lysozyme at room temperature
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.96 Å
Deposited: 2024-01-03
Authors: Ramos, J., Laux, V., Mason, S.A., Lemee, M., Bowler, M., Diederichs, K., Haertlein, M., Forsyth, V.T., Mossou, E., Larsen, S., Langkilde, A.E.
PDB entry 8rlg: Perdeuterated hen egg-white lysozyme at room temperature
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.07 Å
Deposited: 2024-01-03
Authors: Ramos, J., Laux, V., Mason, S.A., Lemee, M., Bowler, M., Diederichs, K., Haertlein, M., Forsyth, V.T., Mossou, E., Larsen, S., Langkilde, A.E.
PDB entry 8rlh: Neutron structure of hydrogenated hen egg-white lysozyme at room temperature
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: NEUTRON DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-01-03
Authors: Ramos, J., Laux, V., Mason, S.A., Lemee, M., Bowler, M., Diederichs, K., Haertlein, M., Forsyth, V.T., Mossou, E., Larsen, S., Langkilde, A.E.
PDB entry 8rli: Neutron structure of perdeuterated hen egg-white lysozyme at room temperature
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: NEUTRON DIFFRACTION
Resolution: 0.91 Å
Deposited: 2024-01-03
Authors: Ramos, J., Laux, V., Mason, S.A., Lemee, M., Bowler, M., Diederichs, K., Haertlein, M., Forsyth, V.T., Mossou, E., Larsen, S., Langkilde, A.E.
PDB entry 8rlj: Structure of the apo form of PIB-1 in an Orthorombic space group
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-01-03
Authors: Medrano, F.J., Romero, A.
PDB entry 8rlk: Structure of the apo form of PIB-1 in an Orthorombic space group
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-01-03
Authors: Medrano, F.J., Romero, A.
PDB entry 8rll: Structure of the apo form of PIB-1 in an Orthorombic space group
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2024-01-03
Authors: Medrano, F.J., Romero, A.
PDB entry 8rlm: TRIF Oligomerisation
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-01-03
Authors: Moncrieffe, M.C., Verstak, B., Whitely, L., Symmoms, M.F., Soares, S.G., Egelman, E.H., Klenerman, D., Bryant, C.E., Gay, N.J.
PDB entry 8rln: Crystal structure of human adenosine A2A receptor (construct A2A-PSB2-bRIL) complexed with the partial antagonist LUF5834 at the orthosteric pocket
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-01-03
Authors: Strater, N., Claff, T., Weisse, R.H., Muller, C.E.
PDB entry 8rlo: Human Carbonic Anhydrase I in complex with veralipride
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-01-03
Authors: Angeli, A., Ferraroni, M.
PDB entry 8rlp: Human Carbonic Anhydrase II in complex with veralipride
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.342 Å
Deposited: 2024-01-03
Authors: Angeli, A., Ferraroni, M.
PDB entry 8rlq: Human Carbonic Anhydrase XII mimic in complex with veralipride
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-01-03
Authors: Angeli, A., Ferraroni, M.
PDB entry 8rlt: TCR in complex with HLA-E*01:03 bound to HBV envelope 371-379 index peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-01-03
Authors: Pengelly, R.J., Godinho, L.F.
PDB entry 8rlu: TCR in complex with HLA-E*01:03 bound to HBV envelope 371-379 S3N peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-01-03
Authors: Pengelly, R.J., Godinho, L.F.
PDB entry 8rlv: TCR in complex with HLA-E*01:03 bound to HBV envelope 371-379 L6I peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.609 Å
Deposited: 2024-01-03
Authors: Pengelly, R.J., Godinho, L.F.
PDB entry 8rlx: Erk2 MAP kinase T188A mutant
Classification: TRANSFERASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-01-04
Authors: Livnah, O., Gutman, D.
PDB entry 8rly: E. coli endonuclease IV complexed with sulfate, catalytic Fe2+
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-01-04
Authors: Saper, M.A., Paterson, N.G., Kirillov, S., Rouvinski, A.
PDB entry 8rlz: NMR solution structure of the N-terminal cytoplasmic domain, DdvANt, of the membrane antisigma factor DdvA
Classification: TRANSCRIPTION
Source organism: Myxococcus xanthus
Experimental method: SOLUTION NMR
Deposited: 2024-01-04
Authors: Pantoja-Uceda, D., Padmanabhan, S.
PDB entry 8rm0: Cryo-EM structure of a Foamy Virus fusion glycoprotein stabilized in the prefusion conformation
Classification: VIRUS
Source organism: Simian foamy virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-01-04
Authors: Fernandez, I., Backovic, M.
PDB entry 8rm1: Cryo-EM structure of a Foamy Virus fusion glycoprotein in the postfusion conformation
Classification: VIRUS
Source organism: Simian foamy virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-01-04
Authors: Fernandez, I., Backovic, M.
PDB entry 8rm2: Erk2 MAP kinase T188E mutant
Classification: TRANSFERASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-01-04
Authors: Livnah, O., Gutman, D.
PDB entry 8rm3: Crystal structure of ferrioxamine transporter FoxA
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2024-01-04
Authors: Josts, I., Tidow, H., Mislin, G.
PDB entry 8rm5: Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPyS complex
Classification: SPLICING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2024-01-05
Authors: Zhang, Z., Kumar, V., Dybkov, O., Will, C.L., Zhong, J., Ludwig, S., Urlaub, H., Kastner, B., Stark, H., Luehrmann, R.
PDB entry 8rm6: Crystal Structure of Human Androgen Receptor DNA Binding Domain Bound to its Response Element: C3(1)ARE
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-01-05
Authors: Lee, X.Y., Helsen, C., Van Eynde, W., Voet, A., Claessens, F.
PDB entry 8rm7: Crystal Structure of Human Androgen Receptor DNA Binding Domain Bound to its Response Element: MMTV-177 GRE/ARE
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-01-05
Authors: Lee, X.Y., Helsen, C., Van Eynde, W., Voet, A., Claessens, F.
PDB entry 8rm8: Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S28P, polymorph 1
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-01-05
Authors: Ooi, S.A., Valli, D., Maj, M.
PDB entry 8rm9: Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S28P, polymorph 2
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.06 Å
Deposited: 2024-01-05
Authors: Ooi, S.A., Valli, D., Maj, M.
PDB entry 8rma: Structure of CTX-M-15 complexed with benzoxaborole AK-431
Classification: ANTIMICROBIAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 0.83 Å
Deposited: 2024-01-05
Authors: Beer, M., Tooke, C.L., Hinchliffe, P., Spencer, J.
PDB entry 8rmb: Erk2 MAP kinase (R65S+T188D) double mutant
Classification: TRANSFERASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-01-05
Authors: Livnah, O., Gutman, D.
PDB entry 8rmc: Structure of the FDX2-bound core ISC complex (proximal conformation)
Classification: TRANSFERASE
Source organism: Escherichia coli BL21(DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2024-01-05
Authors: Steinhilper, R., Murphy, B.J.
PDB entry 8rmd: Structure of the FDX2-bound core ISC complex (distal conformation)
Classification: TRANSFERASE
Source organism: Escherichia coli BL21(DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2024-01-05
Authors: Steinhilper, R., Murphy, B.J.
PDB entry 8rme: Structure of the core ISC complex under turnover conditions (frataxin-bound)
Classification: TRANSFERASE
Source organism: Escherichia coli BL21(DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2024-01-05
Authors: Steinhilper, R., Murphy, B.J.
PDB entry 8rmf: Structure of the core ISC complex under turnover conditions (FDX2-bound in proximal conformation)
Classification: TRANSFERASE
Source organism: Escherichia coli BL21(DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2024-01-05
Authors: Steinhilper, R., Murphy, B.J.
PDB entry 8rmg: Structure of the core ISC complex under turnover conditions (FDX2-bound in distal conformation)
Classification: TRANSFERASE
Source organism: Escherichia coli BL21(DE3); Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2024-01-05
Authors: Steinhilper, R., Murphy, B.J.
PDB entry 8rmh: Crystal structure of parallel G-quadruplex containing T-tetrads and TG-octaplet
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2024-01-06
Authors: Abdullrahman, A., El Omari, K., Paterson, N., Orr, C., Lambert, M., Cardin, C.J., Sanchez-Weatherby, J., Hall, J.P.
PDB entry 8rmi: Crystal structure of ferrioxamine transporter FoxA
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2024-01-06
Authors: Josts, I., Tidow, H., Mislin, G.
PDB entry 8rmj: Drosophila Semaphorin 2b in complex with glycosaminoglycan mimic SOS
Classification: SIGNALING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2024-01-08
Authors: Nourisanami, F., Sobol, M., Rozbesky, D.
PDB entry 8rmk: Cryo-EM structure of human CALHM2 in complex with synthetic nanobody SbC2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-01-08
Authors: Drozdzyk, K., Dutzler, R.
PDB entry 8rml: Structure of heteromeric CALHM2/4 channel in complex with synthetic nanobody SbC4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2024-01-08
Authors: Drozdzyk, K., Dutzler, R.
PDB entry 8rmm: Structure of heteromeric CALHM2/4 channel in complex with synthetic nanobodies SbC2 and SbC4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-01-08
Authors: Drozdzyk, K., Dutzler, R.
PDB entry 8rmn: Cryo-EM structure of a dimer of decameric human CALHM4 in complex with synthetic nanobody SbC4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-01-08
Authors: Peter, M., Drozdzyk, K., Dutzler, R.
PDB entry 8rmo: Crystal structure of anti-FLAG M2 Fab fragment bound to FLAG-tag peptide epitope
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.163 Å
Deposited: 2024-01-08
Authors: Beugelink, J.W., Janssen, B.J.C., Pronker, M.F.
PDB entry 8rmp: Influenza polymerase A/H7N9-4M (ENDO(R) | Core1)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-01-08
Authors: Arragain, B., Cusack, S.
PDB entry 8rmq: Influenza polymerase A/H7N9-4M (ENDO(R) | Core2)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-01-08
Authors: Arragain, B., Cusack, S.
PDB entry 8rmr: Influenza polymerase A/H7N9-4M replication complex, an asymmetric polymerase dimer bound to human ANP32A
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-01-08
Authors: Arragain, B., Cusack, S.
PDB entry 8rms: Influenza polymerase A/H7N9-4M replicase minus 627(R) (from ""Influenza polymerase A/H7N9-4M replication complex"" | Local refinement)
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-01-08
Authors: Arragain, B., Cusack, S.
PDB entry 8rmt: Galectin-3 with a bound inhibitor
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-01-08
Authors: Mac Sweeney, A., Sager, C.