LiteFold/PDB huggingface dataset:
PDB entry 8yk5: Structure of glycerophosphoethanolamine ethanolaminephosphodiesterase from Streptomyces sanglieri
Classification: HYDROLASE
Source organism: Streptomyces sanglieri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-04
Authors: Murayama, K., Sugimori, D.
PDB entry 8yk6: Magnetic effects of thaumatin crystals; observation of the crystal growth of magneto-Archimedes levitation and magnetic orientation
Classification: PLANT PROTEIN
Source organism: Thaumatococcus daniellii
Experimental method: X-RAY DIFFRACTION
Resolution: 0.99 Å
Deposited: 2024-03-04
Authors: Nakabayashi, M., Inaka, K., Fujiwara, M., Hagiwara, M., Maki, S.
PDB entry 8yk7: Structure of Rib domain from surface adhesin of Limosilactobacillus reuteri
Classification: STRUCTURAL PROTEIN
Source organism: Limosilactobacillus reuteri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-03-04
Authors: Xue, Y., Kang, X.
PDB entry 8yk8: adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase -C91S
Classification: TRANSFERASE
Source organism: Methylocapsa palsarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-03-04
Authors: Do, H., Nam, Y.
PDB entry 8yk9: Structure of Saccharolobus solfataricus SegC (SSO0033) protein, ATP soak
Classification: UNKNOWN FUNCTION
Source organism: Saccharolobus solfataricus P2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-03-04
Authors: Yen, C.Y., Lin, M.G., Sun, Y.J., Hsiao, C.D.
PDB entry 8yka: Cryo-EM structure of P97-VCPIP1 complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-03-04
Authors: Liu, Y., Lu, P., Gao, H., Li, F.
PDB entry 8ykc: Crystal structure of adenosylcobinamide kinase / adenosylcobinamide phosphate guanylyltransferase complexed with GDP
Classification: TRANSFERASE
Source organism: Methylocapsa palsarum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.921 Å
Deposited: 2024-03-04
Authors: Nam, Y., Do, H.
PDB entry 8ykd: Cryo-EM structure of ADGRG2-Gs complex with NTF nanobody
Classification: MEMBRANE PROTEIN
Source organism: Spodoptera
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-03-04
Authors: Huang, S.M., Sheng-chao, G.
PDB entry 8yke: Structure of two consecutively arrayed Rib domains (Rib8-9) from surface adhesin of Limosilactobacillus reuteri
Classification: STRUCTURAL PROTEIN
Source organism: Limosilactobacillus reuteri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-04
Authors: Xue, Y., Kang, X.
PDB entry 8ykf: The DSR2-DSAD1 complex with DSAD1 on the opposite sides
Classification: IMMUNE SYSTEM
Source organism: Bacillus phage SPBc2; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-03-05
Authors: Zheng, J., Yang, X.
PDB entry 8ykg: Structure of SARS-CoV-2 spike glycoprotein in complex with NT-108 scFv (1-up state)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2024-03-05
Authors: Anraku, Y., Kita, S., Onodera, T., Tadokoro, T., Ito, S., Adachi, Y., Kotaki, R., Suzuki, T., Hashiguchi, T., Takahashi, Y., Maenaka, K.
PDB entry 8ykh: Structure of SARS-CoV-2 spike RBD in complex with NT-108 scFv
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-03-05
Authors: Anraku, Y., Kita, S., Onodera, T., Tadokoro, T., Ito, S., Adachi, Y., Kotaki, R., Suzuki, T., Hashiguchi, T., Takahashi, Y., Maenaka, K.
PDB entry 8yki: FGFR-1 in complex with ligand tasurgratinib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2024-03-05
Authors: Ikemori-Kawada, M., Watanabe Miyano, S.
PDB entry 8ykj: Crystal structure of SARS-Cov-2 main protease in complex with X77
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-03-05
Authors: Zhou, X.L., Lin, C., Li, W.W., Zhang, J., Li, J.
PDB entry 8ykk: Crystal structure of SARS main protease in complex with X77
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-03-05
Authors: Zhou, X.L., Lin, C., Zhang, J., Li, J.
PDB entry 8ykl: Crystal structure of MERS main protease in complex with X77
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-03-05
Authors: Zhou, X.L., Lin, C., Zhang, J., Li, J.
PDB entry 8ykm: Crystal structure of SARS-Cov-2 main protease G15S mutant in complex with X77
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-03-05
Authors: Zeng, P., Zhang, J., Li, J.
PDB entry 8ykn: Crystal structure of SARS-Cov-2 main protease K90R mutant in complex with X77
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-03-05
Authors: Wang, J., Zhang, J., Li, J.
PDB entry 8yko: Crystal structure of SARS-Cov-2 main protease P132H mutant in complex withX77
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-03-05
Authors: Li, W.W., Zhang, J., Li, J.
PDB entry 8ykp: Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with X77
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-03-05
Authors: Zou, X.F., Zhang, J., Li, J.
PDB entry 8ykq: Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with X77
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-05
Authors: Zou, X.F., Zhang, J., Li, J.
PDB entry 8ykr: Enhancing the Gastric Stability of Ferritin Nanocage via Computational-Assisted Disulfide Bond Engineering
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penaeus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-03-05
Authors: Gu, C.K., Wang, S.J., Zhao, G.H.
PDB entry 8yks: PaThiL in complex with AMP-PNP
Classification: PROTEIN BINDING
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-05
Authors: Lin, J.Q., Chung, Z., Lescar, J.
PDB entry 8ykt: Fab and SEB complex
Classification: PROTEIN BINDING/IMMUNE SYSTEM
Source organism: Homo sapiens; Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-03-05
Authors: Zeng, H., Fan, H.Y.
PDB entry 8yku: PaThiL in complex with AMP-PNP and TMP
Classification: PROTEIN BINDING
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-03-05
Authors: Lin, J.Q., Chung, Z., Lescar, J.
PDB entry 8ykv: Cryo-EM structure of succinate receptor SUCR1 bound to compound 31
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2024-03-05
Authors: Li, C., Liu, H., Li, J., Zhu, H., Fu, W., Xu, H.E.
PDB entry 8ykw: Cryo-EM structure of succinate receptor SUCR1 bound to succinic acid
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-03-05
Authors: Li, C., Liu, H., Li, J., Zhu, H., Fu, W., Xu, H.E.
PDB entry 8ykx: Cryo-EM structure of succinate receptor SUCR1 bound to maleic acid
Classification: MEMBRANTE PROTEIN/IMMUNE SYSTEM
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2024-03-05
Authors: Li, C., Liu, H., Li, J., Zhu, H., Fu, W., Xu, H.E.
PDB entry 8yky: Structure of human class T GPCR TAS2R14-Ggustducin complex with agonist 28.1
Classification: SIGNALING PROTEIN
Source organism: Clostridium perfringens; Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-03-05
Authors: Hu, X.L., Wu, L.J., Hua, T., Liu, Z.J.
PDB entry 8yl2: Crystal Structure of Homo Tetrameric RagA-like small GTPase from Asgard Lokiarchaeota (LokiRagO) in complex with GTP
Classification: HYDROLASE
Source organism: Candidatus Prometheoarchaeum syntrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-03-05
Authors: Alsheikh, F.B., Robinson, R.C.
PDB entry 8yl3: Crystal Structure of Human Rab23 in Complex with GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-03-05
Authors: Chau, Y.Y., Aik, W.S.
PDB entry 8yl4: Crystal structure of the de novo designed protein 200 AA in the crystal form 1
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2024-03-05
Authors: Zhao, Z., Hattori, M.
PDB entry 8yl5: The DSR2-DSAD1 complex with DSAD1 on the same sides
Classification: IMMUNE SYSTEM
Source organism: Bacillus phage SPbeta; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-03-05
Authors: Yang, X., Zheng, J.
PDB entry 8yl6: EDS1-SAG101-NRG1A L134E heterotrimer
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-05
Authors: Wu, X.X., Xiao, Y.Y., Wang, Z.Z., Zhang, Y., Wan, L.
PDB entry 8yl7: EDS1-SAG101-NRG1C heterotrimer
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-05
Authors: Wu, X.X., Xiao, Y.Y., Wang, Z.Z., Zhang, Y., Wan, L.
PDB entry 8yl8: Crystal structure of the de novo designed protein 200 AA in the crystal form 2
Classification: DE NOVO PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-03-05
Authors: Zhao, Z., Hattori, M.
PDB entry 8yl9: Crystal structures of terpene synthases complexed with a substrate mimic
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penicillium brasilianum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-03-05
Authors: Xu, M., Ma, M.
PDB entry 8yla: Crystal structures of terpene synthases complexed with a substrate mimic
Classification: BIOSYNTHETIC PROTEIN
Source organism: Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-03-05
Authors: Xu, M., Ma, M.
PDB entry 8ylb: Cocrystal structures of agonists compound 1 with HsClpP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-03-06
Authors: Zhao, N., Zhu, Y., Bao, R.
PDB entry 8ylc: The crystal structure of PDE4D with Amentoflavone
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.30004 Å
Deposited: 2024-03-06
Authors: Huang, Y.-Y., Luo, H.-B.
PDB entry 8yld: State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-03-06
Authors: Cheng, J., Wu, C.L., Li, J.X., Zhang, X.Z.
PDB entry 8yle: Crystal structure of Werner syndrome helicase complexed with AMP-PCP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2024-03-06
Authors: Yang, Y., Fu, L., Sun, X., Cheng, H., Chen, R.
PDB entry 8ylf: Crystal structure of Burkholderia thailandensis MftR
Classification: TRANSCRIPTION
Source organism: Burkholderia thailandensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2024-03-06
Authors: Song, W.S., Yoon, S.I.
PDB entry 8ylg: Crystal structure of Burkholderia thailandensis MftR in complex with operator DNA
Classification: TRANSCRIPTION
Source organism: Burkholderia thailandensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-06
Authors: Song, W.S., Yoon, S.I.
PDB entry 8ylh: Crystal structure of Pectobacterium atrosepticum PecS
Classification: TRANSCRIPTION
Source organism: Pectobacterium atrosepticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-03-06
Authors: Song, W.S., Yoon, S.I.
PDB entry 8yli: Crystal structure of Pectobacterium atrosepticum PecS in complex with operator DNA
Classification: TRANSCRIPTION
Source organism: Pectobacterium atrosepticum; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-03-06
Authors: Song, W.S., Yoon, S.I.
PDB entry 8ylj: Crystal structure of Pectobacterium atrosepticum PecS in complex with uric acid
Classification: TRANSCRIPTION
Source organism: Pectobacterium atrosepticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-03-06
Authors: Song, W.S., Yoon, S.I.
PDB entry 8ylk: Crystal structure of Burkholderia thailandensis MftR in complex with uric acid
Classification: TRANSCRIPTION
Source organism: Burkholderia thailandensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-06
Authors: Song, W.S., Yoon, S.I.
PDB entry 8yll: Crystal structure of Burkholderia thailandensis MftR in complex with xanthine
Classification: TRANSCRIPTION
Source organism: Burkholderia thailandensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-06
Authors: Song, W.S., Yoon, S.I.
PDB entry 8ylm: Crystal structure of Deinococcus radiodurans HucR in complex with uric acid
Classification: TRANSCRIPTION
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-03-06
Authors: Song, W.S., Yoon, S.I.
PDB entry 8yln: The structure of DSR2-Tail tube complex
Classification: IMMUNE SYSTEM
Source organism: Bacillus phage SPR; Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-03-06
Authors: Zheng, J., Yang, X.
PDB entry 8ylp: Overall structure of the y+LAT1-4F2hc bound with Arg
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-03-06
Authors: Yan, R.H., Dai, L., Zhang, Y.Y., Zhang, T.
PDB entry 8ylr: State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-03-06
Authors: Cheng, J., Wu, C.L., Li, J.X., Zhang, X.Z.
PDB entry 8yls: Structure of SARS-CoV-2 Mpro in complex with its degrader
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-03-06
Authors: Feng, Y., Li, W., Cheng, S.H., Li, X.B.
PDB entry 8ylt: The structure of DSR2 and NAD+ complex
Classification: IMMUNE SYSTEM
Source organism: Bacillus subtilis subsp. natto (strain BEST195)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-03-06
Authors: Zheng, J., Yang, X.
PDB entry 8ylu: structure of phage T6 topoisomerase II central domain bound with DNA
Classification: ISOMERASE
Source organism: Escherichia phage T4; Salmonella phage Chi; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-03-06
Authors: Chen, Y.T., Xin, Y.H.
PDB entry 8ylw: Crystal Structure of Lysyl-tRNA Synthetase from Plasmodium falciparum complexed with Lys-AMS
Classification: LIGASE
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-03-07
Authors: Sharma, V.K., Manickam, Y., Bagale, S., Pradeepkumar, P.I., Sharma, A.
PDB entry 8ylx: Single particle cryo-EM reconstruction of Oryza sativa recombinant human serum albumin
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-03-07
Authors: Dong, C.J., Yang, D.C., Duan, B.R.
PDB entry 8yly: Structural basis of Elongation factor Tu in regulating photoinhibition in Synechococcus sp. PCC 7942.
Classification: PHOTOSYNTHESIS
Source organism: Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-03-07
Authors: Cheng, C., Ma, H.
PDB entry 8ylz: Structure of a cis-Geranylfarnesyl Diphosphate Synthase from Streptomyces clavuligerus
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces clavuligerus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-03-07
Authors: Li, F.R., Wang, Q.L., Pan, X.M., Dong, L.B.
PDB entry 8ym0: Single particle cryo-EM reconstruction of human serum albumin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-03-07
Authors: Dong, C.J., Yang, D.C., Duan, B.R.
PDB entry 8ym1: Structure of SADS-CoV Virus Nucleocapsid Protein
Classification: VIRAL PROTEIN
Source organism: Swine acute diarrhea syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-08
Authors: Zhang, Y., Wu, F., Xu, W.
PDB entry 8ym2: Crystal structure of AIDA-1 PTB domain in complex with SynGAP NPxF motif
Classification: PROTEIN BINDING
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-08
Authors: Wang, X., Wang, Y., Cai, Q., Zhang, M.
PDB entry 8ym3: Structural basis of Elongation factor Tu in regulating photoinhibition in Synechococcus sp. PCC 7942.
Classification: PHOTOSYNTHESIS
Source organism: Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-03-08
Authors: Cheng, C., Ma, H.
PDB entry 8ym4: Structure of Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-03-08
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8ym5: Structure of Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-03-08
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8ym6: Structure of Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-03-08
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8ym7: Crystal structure of Lysine Specific Demethylase 1 (LSD1) with JH-45
Classification: FLAVOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2024-03-08
Authors: Zhiyan, D., Danyan, C., Hong, J., Tongchao, L., Bing, X.
PDB entry 8yma: CRYSTAL STRUCTURE OF A NOVEL PU PLASTIC DEGRADATION ENZYME FROM THERMAEROBACTER MARIANENSIS
Classification: HYDROLASE
Source organism: Thermaerobacter marianensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2024-03-08
Authors: Li, Z.S., Wang, H., Gao, J., Chen, Y.Y., Wei, H.L., Han, X., Wei, R., Bornscheuer, U.T., Liu, W.D.
PDB entry 8ymb: The crystal structure of SHD931 in complex with Brd4-BD2 and VCB
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2024-03-08
Authors: Huang, W.X., Chen, Y.H., Li, C.G., Ding, K.
PDB entry 8ymc: FtsEX in nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-08
Authors: Chang, S., Dong, H., Tang, X.
PDB entry 8ymd: Galectin-3 with lychnose
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2024-03-09
Authors: Su, J.Y.
PDB entry 8yme: BRD4-BD1 in complex with N-cyclohexyl-1-methyl-6-{[5-methyl-7-(1-methylpyrazol-3-yl)-4-oxo-pyrazolo[4,3-c]pyridin-2-yl]methyl}azepan-1-ium-4-carboxamide 2,2,2-trifluoroacetate
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2024-03-09
Authors: Sasaki, C., Miyaguchi, I., Hagihara, S., Ishizawa, K., Endo, J.
PDB entry 8ymf: BRD4-BD1 in complex with 7-[2-(cyclopropylmethoxy)phenyl]-5-methyl-2-[(1-methylsulfonyl-4-piperidyl)methyl]pyrazolo[4,3-c]pyridin-4-one
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.015 Å
Deposited: 2024-03-09
Authors: Sasaki, C., Miyaguchi, I., Hagihara, S., Ishizawa, K., Endo, J.
PDB entry 8ymg: BRD4-BD1 in complex with 7-[4-chloro-1-(tetrahydropyran-4-ylmethyl)imidazol-2-yl]-5-methyl-2-{[(2R)-2-methyl-4-methylsulfonyl-piperazin-1-yl]methyl}furo[3,2-c]pyridin-4-one
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.007 Å
Deposited: 2024-03-09
Authors: Sasaki, C., Miyaguchi, I., Hagihara, S., Ishizawa, K., Endo, J.
PDB entry 8ymh: BRD4-BD1 in complex with 5-methyl-2-{[(2R)-2-methyl-4-methylsulfonyl-piperazin-1-yl]methyl}-7-(1-methylpyrazol-3-yl)furo[3,2-c]pyridin-4-one
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2024-03-09
Authors: Sasaki, C., Miyaguchi, I., Hagihara, S., Ishizawa, K., Endo, J.
PDB entry 8ymi: BRD4-BD1 in complex with 2-{[(3S)-1-benzylpyrrolidin-3-yl]methyl}-5-methyl-7-(1-methylpyrazol-3-yl)pyrazolo[4,3-c]pyridin-4-one
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2024-03-09
Authors: Sasaki, C., Miyaguchi, I., Hagihara, S., Ishizawa, K., Endo, J.
PDB entry 8ymj: Cryo-EM structure of Hepatitis B virus surface antigen subviral particle with D2 symmetry
Classification: VIRUS LIKE PARTICLE
Source organism: Hepatitis B virus ayw/China/Tibet127/2002
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2024-03-09
Authors: Wang, T., Cao, L., Mu, A., Wang, Q., Rao, Z.H.
PDB entry 8ymk: Localized reconstruction of Hepatitis B virus surface antigen dimer in the subviral particle with D2 symmetry from dataset A0
Classification: VIRAL PROTEIN
Source organism: Hepatitis B virus ayw/China/Tibet127/2002
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-03-09
Authors: Wang, T., Cao, L., Mu, A., Wang, Q., Rao, Z.H.
PDB entry 8ymm: OSCA1.1-F516A open
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-03-09
Authors: Zhang, M.F.
PDB entry 8ymn: OSCA1.1-F516A pre-open 2
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2024-03-09
Authors: Zhang, M.F.
PDB entry 8ymo: OSCA1.1-F516A pre-open 1
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-09
Authors: Zhang, M.F.
PDB entry 8ymp: OSCA1.1-F516A nanodisc in LPC
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-03-09
Authors: Zhang, M.F.
PDB entry 8ymq: OSCA1.1-F516A nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-03-09
Authors: Zhang, M.F.
PDB entry 8ymr: The structure of BRTNaC1 at high pH
Classification: MEMBRANE PROTEIN
Source organism: Scolopendra mutilans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-03-10
Authors: Chen, X., Su, N., Yuan, L.
PDB entry 8yms: The structure of BRTNaC1 at low pH
Classification: MEMBRANE PROTEIN
Source organism: Scolopendra mutilans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2024-03-10
Authors: Chen, X., Su, N., Yuan, L.
PDB entry 8ymt: Structure of BRTNaC1 at low pH with testosterone
Classification: MEMBRANE PROTEIN
Source organism: Scolopendra mutilans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-03-10
Authors: Chen, X., Su, N., Yuan, L.
PDB entry 8ymu: Acid activated state of BRTNaC1
Classification: MEMBRANE PROTEIN
Source organism: Scolopendra mutilans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-03-10
Authors: Chen, X., Su, N., Yuan, L.
PDB entry 8ymv: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/R347K/C393S
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2024-03-10
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8ymw: The structure of BRTNaC1 at 4 degrees Celsius
Classification: MEMBRANE PROTEIN
Source organism: Scolopendra mutilans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-10
Authors: Yuan, L., Chen, X., Su, N.
PDB entry 8ymx: The structure of BRTNaC1 at 40 degree centigrade
Classification: MEMBRANE PROTEIN
Source organism: Scolopendra mutilans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-03-10
Authors: Yuan, L., Chen, X., Su, N.
PDB entry 8ymy: X-Ray crystal structure of glycoside hydrolase family 6 cellobiohydrolase from Phanerochaete chrysosporium PcCel6A C240S/R347K/C393S cocrystallized with cellotriose
Classification: HYDROLASE
Source organism: Phanerodontia chrysosporium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.01 Å
Deposited: 2024-03-10
Authors: Yamaguchi, S., Sunagawa, N., Tachioka, M., Igarashi, K.
PDB entry 8ymz: Structure of ZBTB43 in complex with CACA containing B-form DNA
Classification: DNA/DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2024-03-10
Authors: Li, X., Yang, Y.
PDB entry 8yn0: Crystal structure of NRG1C in complex with EDS1-SAG101-(ADPr-ATP)
Classification: PLANT PROTEIN/HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2024-03-10
Authors: Huang, S., Xiao, Y., Chai, J.
PDB entry 8yn1: Cryo-EM structure of NRG1A(LRR) in complex with EDS1-SAG101-(ADPr-ATP)
Classification: PLANT PROTEIN/HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-03-10
Authors: Huang, S., Xiao, Y., Chai, J.
PDB entry 8yn2: Cryo-EM structure of histamine H1 receptor in complex with histamine and miniGq
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8yn3: Cryo-EM structure of histamine H2 receptor in complex with histamine and miniGs
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8yn4: Cryo-EM structure of histamine H2 receptor in complex with histamine and miniGq
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8yn5: Cryo-EM structure of histamine H3 receptor in complex with histamine and Gi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8yn6: Cryo-EM structure of histamine H3 receptor in complex with imetit and Gi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8yn7: Cryo-EM structure of histamine H3 receptor in complex with immethridine and miniGo
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8yn8: Cryo-EM structure of histamine H3 receptor in complex with proxyfan and miniGo
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8yn9: Cryo-EM structure of histamine H4 receptor in complex with histamine and Gi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8yna: Cryo-EM structure of histamine H4 receptor in complex with immepip and Gi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2024-03-10
Authors: Zhang, X., Liu, G., Li, X., Gong, W.
PDB entry 8ynd: ATP-grasp peptide ligase from Streptomyces
Classification: LIGASE
Source organism: Streptomyces albogriseolus 1-36
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2024-03-11
Authors: Xu, M.J., Yan, Y.Q.
PDB entry 8ynf: Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CXCL8
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2024-03-11
Authors: Banerjee, R., Khanppnavar, B., Maharana, J., Saha, S., Korkhov, V.M., Shukla, A.K.
PDB entry 8yng: CDK2 and compounds and inhibors
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-03-11
Authors: Ge, S.
PDB entry 8yni: Structure of the FADD/Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2024-03-11
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8ynj: Crystal structure of Langat virus helicase
Classification: VIRAL PROTEIN
Source organism: Langat virus (strain TP21)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2024-03-11
Authors: Chen, C., Xue, L.R.
PDB entry 8ynk: Structure of the Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2024-03-11
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8ynl: Structure of the Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-03-11
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8ynm: Structure of the Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2024-03-11
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8ynn: Structure of the Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-03-11
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8yno: RNA duplex containing Formamide
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-03-11
Authors: Kondo, J., Abe, H.
PDB entry 8ynp: RNA duplex containing Methylformamide
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-03-11
Authors: Kondo, J., Abe, H.
PDB entry 8ynq: ATP-grasp peptide ligase from Streptomyces
Classification: LIGASE
Source organism: Streptomyces albogriseolus 1-36
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-03-11
Authors: Xu, M.J., Yan, Y.Q.
PDB entry 8ynr: Crystal Structure of Human Rab23 in complex with GMPPNP (1.8 Angstroms Resolution)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-11
Authors: Chau, Y.Y., Aik, W.S.
PDB entry 8yns: Cryo-EM structure of SNAP-94847-bound MCHR1, S1 state
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC); Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-03-11
Authors: Ye, X., Liu, G., Li, X., Liu, H., Gong, W.
PDB entry 8ynt: Cryo-EM structure of SNAP-94847-bound MCHR1, S2 state
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC); Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2024-03-11
Authors: Ye, X., Liu, G., Li, X., Liu, H., Gong, W.
PDB entry 8ynu: Crystal structure of the myb domain of S.pombe Tbf1 in the P222 space group
Classification: DNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe 972h-
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-03-12
Authors: Zhou, Y.Z., Wu, Z.F.
PDB entry 8ynv: Poly(3-hydroxybutyrate) depolymerase PhaZ from Bacillus thuringiensis
Classification: HYDROLASE
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-03-12
Authors: Wang, Y.L., Ye, L.C., Chen, S.C., Hsu, C.H.
PDB entry 8ynw: S102A mutant of poly(3-hydroxybutyrate) depolymerase PhaZ from Bacillus thuringiensis
Classification: HYDROLASE
Source organism: Bacillus thuringiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-12
Authors: Wang, Y.L., Ye, L.C., Chen, S.C., Hsu, C.H.
PDB entry 8ynx: Crystal structure of Cag3-CagT complex from Helicobacter pylori
Classification: STRUCTURAL PROTEIN
Source organism: Helicobacter pylori (strain G27)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2024-03-12
Authors: Mok, C.Y., Au, S.W.N.
PDB entry 8yny: Structure of Cas9-sgRNA ribonucleoprotein bound to nucleosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.52 Å
Deposited: 2024-03-12
Authors: Nagamura, R., Kujirai, T., Kusakizako, T., Hirano, H., Kurumizaka, H., Nureki, O.
PDB entry 8ynz: The structure of EfpA_BRD-8000.3 complex
Classification: PROTEIN BINDING
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-03-12
Authors: Li, D.L., Sun, J.Q.
PDB entry 8yo0: Crystal Structure of Human Rab23 Y79del in Complex with GDP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-03-12
Authors: Liang, H., Chau, Y.Y., Aik, W.S.
PDB entry 8yo1: structure of phage T6 topoisomerase II ATPase domain bound with AMPPNP
Classification: ISOMERASE
Source organism: Enterobacteria phage T6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-03-12
Authors: Chen, Y.T., Xin, Y.H.
PDB entry 8yo2: Metallo-beta-lactamase VIM-2 in Complex with MBL Inhibitor B4
Classification: METAL BINDING PROTEIN/INHIBITOR
Source organism: Enterobacteriaceae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.498 Å
Deposited: 2024-03-12
Authors: Wang, S.Y., Wang, S.Y.
PDB entry 8yo3: structure of phage T4 topoisomerase II central domain
Classification: ISOMERASE
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2024-03-12
Authors: Chen, Y.T., Xin, Y.H., Xian, R.Q.
PDB entry 8yo4: structure of phage T4 topoisomerase II central domain bound with DNA
Classification: ISOMERASE
Source organism: Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-12
Authors: Chen, Y.T., Xin, Y.H., Xian, R.Q.
PDB entry 8yo5: structure of phage T6 topoisomerase II central domain
Classification: ISOMERASE
Source organism: Enterobacteria phage T6; Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2024-03-12
Authors: Chen, Y.T., Xin, Y.H., Xian, R.Q.
PDB entry 8yo6: Crystal structure of CagT from Helicobacter pylori
Classification: STRUCTURAL PROTEIN
Source organism: Helicobacter pylori (strain G27)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-03-12
Authors: Mok, C.Y., Au, S.W.N.
PDB entry 8yo7: structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA
Classification: ISOMERASE
Source organism: Enterobacteria phage T6; Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-03-12
Authors: Chen, Y.T., Xin, Y.H., Xian, R.Q.
PDB entry 8yo8: Crystal structure of hFSP1 with both 6-OH-FAD and NAD (hFSP1-6-OH-FAD-NAD)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-12
Authors: Lan, H.Y., Gao, Y., Hong, T., Zhao, Z.Z., Chang, Z.H., Wang, Y.F., Wang, F.
PDB entry 8yo9: structure of phage T4 topoisomerase II gp52 subunit WHD-open state
Classification: ISOMERASE
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.12 Å
Deposited: 2024-03-13
Authors: Chen, Y.T., Xin, Y.H., Xian, R.Q.
PDB entry 8yoa: Crystal structure of endolytic transglycosylase MltG
Classification: LYASE
Source organism: Mycobacteroides abscessus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-03-13
Authors: Lee, G.H., Park, H.H.
PDB entry 8yod: structure of phage T6 apo full-length topoisomerase II
Classification: ISOMERASE
Source organism: Enterobacteria phage T6; Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2024-03-13
Authors: Chen, Y.T., Xin, Y.H., Xian, R.Q.
PDB entry 8yon: structure of phage T6 full-length topoisomerase II bound with DNA
Classification: ISOMERASE
Source organism: Enterobacteria phage T6; Escherichia phage T4; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.73 Å
Deposited: 2024-03-13
Authors: Chen, Y.T., Xin, Y.H., Xian, R.Q.
PDB entry 8yoo: Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2024-03-13
Authors: Li, X., Wang, M., Denk, T., Cheng, J.
PDB entry 8yop: Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-03-13
Authors: Li, X., Wang, M., Denk, T., Cheng, J.
PDB entry 8yoq: Crystal structure of hFSP1 with both 6-OH-FAD and NADP (hFSP1-6-OH-FAD-NADP)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2024-03-13
Authors: Lan, H.Y., Gao, Y., Hong, T., Zhao, Z.Z., Chang, Z.H., Wang, Y.F., Wang, F.
PDB entry 8yor: Complex of HARSWHEP and a-HARSWHEP Fab
Classification: SPLICING/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-03-13
Authors: Zhai, L.
PDB entry 8yot: Nanobody in complex with LILRB3
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2024-03-13
Authors: Jin, C., Shi, Y.
PDB entry 8you: The pmTcDH complex structure with an inhibitor SeCN
Classification: OXIDOREDUCTASE
Source organism: Pelomicrobium methylotrophicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-13
Authors: Varfolomeeva, L.A., Polyakov, K.M., Shipkov, N.S., Dergousova, N.I., Boyko, K.M., Tikhonova, T.V., Popov, V.O.
PDB entry 8yox: Crystal structure of hFSP1 with 6-OH-FAD (hFSP1-6-OH-FAD)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2024-03-14
Authors: Lan, H.Y., Gao, Y., Hong, T., Zhao, Z.Z., Chang, Z.H., Wang, Y.F., Wang, F.
PDB entry 8yoy: Structure of HKU1A RBD with TMPRSS2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Candidatus Accumulibacter adiacens; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-03-14
Authors: Gao, X., Cui, S., Ding, W., Shang, K., Zhu, H., Zhu, K.
PDB entry 8yoz: Crystal structure of the small zinc-finger protein ZifS (TTHA0897) from Thermus thermophilus HB8.
Classification: UNKNOWN FUNCTION
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-03-14
Authors: Kurinami, S., Fukui, K., Murakawa, T., Baba, S., Kumasaka, T., Okanishi, H., Kanai, Y., Yano, T., Masui, R.
PDB entry 8yp0: Crystal Structure of Human Rab23 Y79del in Complex with GMPPNP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-03-14
Authors: Liang, H., Chau, Y.Y., Aik, W.S.
PDB entry 8yp1: Crystal structure of HARS WHEP domain fused with Fc
Classification: SPLICING-IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2024-03-15
Authors: Geng, Y., Zhai, L.
PDB entry 8yp2: the crystal structure of inactive Magnaporthe grisea oxidoreductase in complex with NADP and Glycerol
Classification: OXIDOREDUCTASE
Source organism: Pyricularia grisea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2024-03-15
Authors: Huang, X., Jiang, H., Tang, D., Lin, S.
PDB entry 8yp3: Crystal structure of UDP-N-acetylglucosamine pyrophosphorylase from Spodoptera frugiperda in complex with UDP-GlcNAc
Classification: SUGAR BINDING PROTEIN
Source organism: Spodoptera frugiperda
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-03-15
Authors: Lu, Q., Liu, T., Zhou, Y., Yang, Q.
PDB entry 8yp4: Structure of MAP2K1 complexed with 5Z7-oxozeaenol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-03-15
Authors: Yumura, S., Kinoshita, T.
PDB entry 8yp5: The structure of MAP2K4 complexed with 5Z7-oxozeaenol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-03-15
Authors: Yumura, S., Kinishita, T.
PDB entry 8yp6: Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2024-03-15
Authors: Banerjee, A., Srinivasan, K., Sengupta, J.
PDB entry 8yp7: Crystal structure of glucosyltransferase RrUGT3
Classification: BIOSYNTHETIC PROTEIN
Source organism: Rhodiola rosea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-03-15
Authors: Cai, Y.
PDB entry 8yp8: Structure of the p38alpha-pepHePTPm(16-31)(V31C ) complex
Classification: TRANSFERASE
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2024-03-15
Authors: Zhang, Y.Y., Pei, C.J., He, Q.Q., Luo, Z.P., Wu, J.W., Wang, Z.X.
PDB entry 8yp9: the crystal structure of wildtype Magnaporthe grisea oxidoreductase in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Pyricularia grisea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-03-15
Authors: Huang, X., Jiang, H., Tang, D., Lin, S.
PDB entry 8ypa: Human mitochondrial ClpP in complex with TR89
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2024-03-16
Authors: Li, Q.-N., Sun, H.-Y., Xiao, Y.-B.
PDB entry 8ypb: Cryo-EM structure of the LH1 complex from Allochromatium tepidum
Classification: PHOTOSYNTHESIS
Source organism: Allochromatium tepidum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-03-16
Authors: Wang, G.-L., Sun, S., Yu, L.-J.
PDB entry 8ypd: Cryo-EM structure of the LH1 complex from Allochromatium tepidum
Classification: PHOTOSYNTHESIS
Source organism: Allochromatium tepidum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2024-03-16
Authors: Wang, G.-L., Sun, S., Yu, L.-J.
PDB entry 8ype: The crystal structure of inactive p38 complexed with a ATF2 from 46 to 80
Classification: TRANSFERASE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-03-16
Authors: Zhang, Y.Y., Pei, C.J., He, Q.Q., Luo, Z.P., Wu, J.W., Wang, Z.X.
PDB entry 8ypf: The crystal structure of inactive p38 complexed with a ATF2 from 46 to 90
Classification: TRANSFERASE
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-16
Authors: Zhang, Y.Y., Pei, C.J., He, Q.Q., Luo, Z.P., Wu, J.W., Wang, Z.X.
PDB entry 8ypj: Cyrstal structure of the MazE-mt10 Antitoxin from Mycobacterium tuberculosis
Classification: SIGNALING PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2024-03-17
Authors: Lee, K.Y.
PDB entry 8ypk: mouse proteasome 20S subunit in complex with compound 1
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-17
Authors: Kashima, A., Arai, Y.
PDB entry 8ypt: Cryo-EM structure of BfUbb-ButCD complex
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides fragilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-03-18
Authors: Xu, J.H., Chen, Z., Gao, X.
PDB entry 8ypu: Cryo-EM structure of ButCD complex
Classification: MEMBRANE PROTEIN
Source organism: Bacteroides fragilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-03-18
Authors: Xu, J.H., Chen, Z., Gao, X.
PDB entry 8ypw: CDK2 and small molecular inhibitor L14
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-18
Authors: Ge, S.
PDB entry 8ypx: Room temperature structure of TsaGH11 determined by MX
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-03-18
Authors: Nam, K.H.
PDB entry 8ypy: Crystal strcuture of human phosphoribosyl pyrophosphate synthetase2 (PRPS2) in complex with ligands
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2024-03-18
Authors: Zhang, L., Zhang, L.
PDB entry 8ypz: Crystal strcture of human phosphoribosyl pyrophosphate synthetase 1 (PRPS1) in complex with GDP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-03-18
Authors: Zhang, L., Zhang, L.