LiteFold/PDB huggingface dataset:
PDB entry 8t0f: Crystal structure of the PEG10 promoter-bound ONECUT2 DNA-binding domain
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-05-31
Authors: Chatterjee, A., Katiki, M., Murali, R.
PDB entry 8t0g: Backbone Dialkylation in Peptide Hairpins: Natural Backbone Prototype
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-06-01
Authors: Heath, S.L., Horne, W.S., Lengyel, G.A.
PDB entry 8t0h: Backbone Dialkylation in Peptide Hairpins: (S)-Ethylpropylglycine variant
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-06-01
Authors: Heath, S.L., Horne, W.S., Lengyel, G.A.
PDB entry 8t0i: Backbone Dialkylation in Peptide Hairpins: (R)-Ethylpropylglycine variant
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-06-01
Authors: Heath, S.L., Horne, W.S., Lengyel, G.A.
PDB entry 8t0j: Salmonella Typhimurium ArnD
Classification: HYDROLASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-06-01
Authors: Sousa, M.C., Munoz-Escudero, D., Lee, M.
PDB entry 8t0k: Cryo-EM of the GDP-bound human dynamin (full-length) polymer assembled on the membrane in the super constricted state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-06-01
Authors: Jimah, J.R., Canagarajah, B.J., Hinshaw, J.E.
PDB entry 8t0l: E. coli Sw2/Snf2 ATPase RapA bound to both ADP-AlF3 and reconstituted E. coli RNA polymerase post-termination complex on negatively-supercoiled DNA
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-06-01
Authors: Brewer, J.J., Darst, S.A., Campbell, E.A.
PDB entry 8t0m: Proteasome 20S core particle from Pre1-1 Pre4-1 Double mutant
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-06-01
Authors: Walsh Jr., R.M., Rawson, S., Schnell, H., Velez, B., Hanna, J.
PDB entry 8t0n: Structure of Compound 4 bound to human ALDH1A1
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-06-01
Authors: Hurley, T.D.
PDB entry 8t0o: Fab from mAb RB2AT_87
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-06-01
Authors: Kreutzer, A.G., Malonis, R.J., Lai, J.R., Nowick, J.S.
PDB entry 8t0p: Structure of Cse4 bound to Ame1 and Okp1
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-06-01
Authors: Deng, S., Harrison, S.C.
PDB entry 8t0r: Cryo-EM of the GDP-bound human dynamin (full-length) polymer assembled on the membrane in the super constricted state (full helix)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2023-06-01
Authors: Jimah, J.R., Canagarajah, B.J., Hinshaw, J.E.
PDB entry 8t0s: Crystal structure of UBE2G2 adduct with phenethyl isothiocyanate (PEITC) at the Cys48 position
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-06-01
Authors: Wang, C., Shaw, G.X., Shi, G., Ji, X.
PDB entry 8t0t: Structure of Compound 4 bound to human ALDH1A1
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-06-01
Authors: Hurley, T.D.
PDB entry 8t0u: Crystal structure of dimethylsulfone monooxygenase SfnG from Pseudomonas fluorescens
Classification: FLAVOPROTEIN
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-06-01
Authors: Gonzalez, R., Soule, J., Dowling, D.P.
PDB entry 8t0v: Closed state of lysine 5,6-aminomutase from Thermoanaerobacter tengcongensis
Classification: ISOMERASE
Source organism: Caldanaerobacter subterraneus subsp. tengcongensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-01
Authors: Tian, S., Tjia-Fleck, S.
PDB entry 8t0w: Crystal structure of dimethylsulfone (DMSO2) monooxygenase SfnG from Pseudomonas fluorescens with DMSO2 and oxidized FMN bound
Classification: FLAVOPROTEIN
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-06-01
Authors: Gonzalez, R., Soule, J., Dowling, D.P.
PDB entry 8t0y: TRPV1 in nanodisc bound with one LPA in one monomer
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-01
Authors: Arnold, W.R., Cheng, Y.
PDB entry 8t0z: Human liver-type glutaminase (K253A) with L-Gln, filamentous form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-06-01
Authors: Feng, S., Aplin, C., Nguyen, T.-T.T., Milano, S.K., Cerione, R.A.
PDB entry 8t10: TRPV1 in nanodisc bound with two LPA molecules in opposite monomers
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-06-01
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8t11: Crystal structure of the PEG10 promoter-bound ONECUT2 R479A/R480A mutant DNA-binding domain
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2023-06-01
Authors: Chatterjee, A., Katiki, M., Murali, R.
PDB entry 8t12: Cryo-EM structure of DENV2 NS5 in complex with human STAT2 with the N-terminal domain of STAT2 ordered.
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2023-06-01
Authors: Biswal, M., Lu, J., Song, J.
PDB entry 8t13: Cryo-EM structure of DENV2 NS5 in complex with human STAT2 with the N-terminal domain of STAT2 disordered
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Dengue virus type 2; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2023-06-01
Authors: Biswal, M., Lu, J., Song, J.
PDB entry 8t14: ADP-bound Bcs1 (C7 symmetrized)
Classification: TRANSLOCASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-06-01
Authors: Zhan, J., Xia, D.
PDB entry 8t15: Cryo-EM structure of dodecameric hub domain of CaMKII alpha
Classification: SIGNALING PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-06-01
Authors: Chien, C.-T., Chiu, W., Khan, S.
PDB entry 8t17: Cryo-EM structure of tetradecameric hub domain of CaMKII beta
Classification: SIGNALING PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-06-02
Authors: Chien, C.-T., Chiu, W., Khan, S.
PDB entry 8t18: Cryo-EM structure of dodecameric hub domain of CaMKII beta
Classification: SIGNALING PROTEIN
Source organism: Aequorea victoria; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-06-02
Authors: Chien, C.-T., Chiu, W., Khan, S.
PDB entry 8t19: RiPP precursor peptide recognition element (RRE) domain of Ocin-ThiF-like partner protein, PbtF, bound to an 8 residue fragment of its precursor peptide, PbtA
Classification: BIOSYNTHETIC PROTEIN
Source organism: Planobispora rosea; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-06-02
Authors: Cogan, D.P., Nair, S.K., Mitchell, D.A.
PDB entry 8t1a: Crystal Structure of S-adenosylmethionine-dependent methyltransferase UmaA from Mycobacterium tuberculosis (P32 Twin)
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-02
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8t1b: Cryo-EM structure of full-length human TRPV4 in apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-02
Authors: Nadezhdin, K.D., Talyzina, I.A., Neuberger, A., Sobolevsky, A.I.
PDB entry 8t1c: Cryo-EM structure of human TRPV4 ankyrin repeat domain in complex with GTPase RhoA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human cytomegalovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-06-02
Authors: Nadezhdin, K.D., Talyzina, I.A., Neuberger, A., Sobolevsky, A.I.
PDB entry 8t1d: Open-state cryo-EM structure of full-length human TRPV4 in complex with agonist 4a-PDD
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-06-02
Authors: Talyzina, I.A., Nadezhdin, K.D., Neuberger, A., Sobolevsky, A.I.
PDB entry 8t1e: Closed-state cryo-EM structure of full-length human TRPV4 in the presence of 4a-PDD
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-06-02
Authors: Talyzina, I.A., Nadezhdin, K.D., Neuberger, A., Sobolevsky, A.I.
PDB entry 8t1f: Cryo-EM structure of full-length human TRPV4 in complex with antagonist HC-067047
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human cytomegalovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2023-06-02
Authors: Talyzina, I.A., Nadezhdin, K.D., Neuberger, A., Sobolevsky, A.I.
PDB entry 8t1g: The crystal structure of hemagglutinin form a h7n9 influenza virus (a/shanghai/1/2013) in complex with antibody 1E11
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-06-02
Authors: Zhou, T., Kwong, P.D.
PDB entry 8t1h: Cryo-EM structure of a full-length, native Drp1 dimer
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.97 Å
Deposited: 2023-06-02
Authors: Rochon, K., Mears, J.A.
PDB entry 8t1i: Atomic model of the mammalian Mediator complex with MED26 subunit
Classification: GENE REGULATION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.68 Å
Deposited: 2023-06-02
Authors: Zhao, H., Asturias, F.
PDB entry 8t1j: Uncrosslinked nNOS-CaM oxygenase homodimer
Classification: CYTOSOLIC PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-06-02
Authors: Lee, K., Pospiech, T.H., Southworth, D.
PDB entry 8t1k: DSBU crosslinked nNOS-CaM oxygenase homodimer
Classification: CYTOSOLIC PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-06-02
Authors: Lee, K., Pospiech, T.H., Southworth, D.
PDB entry 8t1l: Atomic model of the mammalian mouse Mediator complex with CKM module
Classification: GENE REGULATION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.83 Å
Deposited: 2023-06-02
Authors: Zhao, H., Asturias, F.
PDB entry 8t1m: Novel Domain of Unknown Function Solved with AlphaFold
Classification: UNKNOWN FUNCTION
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-06-02
Authors: Miller, J.E., Agdanowski, M.P., Cascio, D., Sawaya, M.R., Yeates, T.O.
PDB entry 8t1n: Micro-ED Structure of a Novel Domain of Unknown Function Solved with AlphaFold
Classification: UNKNOWN FUNCTION
Source organism: Burkholderia pseudomallei
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3 Å
Deposited: 2023-06-02
Authors: Miller, J.E., Cascio, D., Sawaya, M.R., Cannon, K.A., Rodriguez, J.A., Yeates, T.O.
PDB entry 8t1o: AP2 bound to MSP2N2 nanodisc with Tgn38 cargo peptide; composite map
Classification: ENDOCYTOSIS
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-06-02
Authors: Baker, R.W., Cannon, K.S., Reta, S.
PDB entry 8t1p: Heterodimeric ABC transporter BmrCD in the occluded conformation bound to ADPVi: BmrCD_OC-ADPVi
Classification: TRANSLOCASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-06-02
Authors: Tang, Q., Mchaourab, H.S.
PDB entry 8t1q: Crystal structure of human CPSF73 catalytic segment in complex with compound 1
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-06-02
Authors: Huang, J., Tong, L.
PDB entry 8t1r: Crystal structure of human CPSF73 catalytic segment in complex with compound 2
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-02
Authors: Huang, J., Tong, L.
PDB entry 8t1s: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA with QSY deletion) heteromeric complex (bound to SAH)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-03
Authors: Crone, K.K., Jomori, T., Miller, F.S., Gralnick, J., Elias, M., Freeman, M.F.
PDB entry 8t1t: Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA with QSY deletion) heteromeric complex (bound to SAM)
Classification: TRANSFERASE
Source organism: Shewanella oneidensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-06-03
Authors: Crone, K.K., Jomori, T., Miller, F.S., Gralnick, J., Elias, M., Freeman, M.F.
PDB entry 8t1u: Crystal structure of the DRM2-CTA DNA complex
Classification: TRANSFERASE/DNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2023-06-03
Authors: Chen, J., Lu, J., Song, J.
PDB entry 8t1v: Crystal structure of orphan G protein-coupled receptor 6 with bound inverse agonist 3h
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-06-04
Authors: Barekatain, M., Johansson, L., Lam, J.H., Sadybekov, A.V., Han, G.W., Popov, P., Russo, J., Bliesath, J., Brice, N., Beresford, M., Carlson, L., Saikatendu, K.S., Sun, H., Murphy, S., Monenschein, H., Schiffer, H.H., Lutomski, C., Robinson, C.V., Liu, Z., Hua, T., Katritch, V., Cherezov, V.
PDB entry 8t1w: Crystal structure of orphan G protein-coupled receptor 6 with bound CVN424
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2023-06-04
Authors: Barekatain, M., Johansson, L., Lam, J.H., Sadybekov, A.V., Han, G.W., Popov, P., Russo, J., Bliesath, J., Brice, N., Beresford, M., Carlson, L., Saikatendu, K.S., Sun, H., Murphy, S., Monenschein, H., Schiffer, H.H., Lutomski, C., Robinson, C.V., Liu, Z., Hua, T., Katritch, V., Cherezov, V.
PDB entry 8t1x: T4 highly immunogenic outer capsid protein C-terminal domain bound to the vertex-proximal gp23* capsomer of the isometric head in two preferred orientations
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-06-04
Authors: Fokine, A., Rao, V.B.
PDB entry 8t1y: Crystal Structure of Porphyromonas gingivalis Sialidase (PG_0352) Bound to Neu5Ac2en (DANA)
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-06-05
Authors: Clark, N.D., Malkowski, M.G.
PDB entry 8t1z: Crystal Structure of Porphyromonas gingivalis Sialidase (PG_0352) Bound to Neu5Ac (NANA)
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-06-05
Authors: Clark, N.D., Malkowski, M.G.
PDB entry 8t20: Cryo-EM structure of mink variant Y453F trimeric spike protein bound to two mink ACE2 receptors
Classification: VIRAL PROTEIN
Source organism: Neovison vison; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-06-05
Authors: Ahn, H.M., Calderon, B., Fan, X., Gao, Y., Horgan, N., Zhou, B., Liang, B.
PDB entry 8t21: Cryo-EM structure of mink variant Y453F trimeric spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-05
Authors: Ahn, H.M., Calderon, B., Fan, X., Gao, Y., Horgan, N., Zhou, B., Liang, B.
PDB entry 8t22: Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors at downRBD conformation
Classification: VIRAL PROTEIN
Source organism: Neovison vison; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2023-06-05
Authors: Ahn, H.M., Calderon, B., Fan, X., Gao, Y., Horgan, N., Zhou, B., Liang, B.
PDB entry 8t23: Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at upRBD conformation
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Neovison vison
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2023-06-05
Authors: Ahn, H.M., Calderon, B., Fan, X., Gao, Y., Horgan, N., Zhou, B., Liang, B.
PDB entry 8t24: Crystal Structure of Porphyromonas gingivalis Sialidase (PG_0352)- Fructose bound in CBM
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2023-06-05
Authors: Clark, N.D., Malkowski, M.G.
PDB entry 8t25: Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at downRBD conformation.
Classification: VIRAL PROTEIN
Source organism: Neovison vison; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2023-06-05
Authors: Ahn, H.M., Calderon, B., Fan, X., Gao, Y., Horgan, N., Zhou, B., Liang, B.
PDB entry 8t26: Crystal Structure of Porphyromonas gingivalis Sialidase (PG_0352) D219A mutant bound to 3'-Sialyllactose (only Neu5Ac visible)
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-06-05
Authors: Clark, N.D., Malkowski, M.G.
PDB entry 8t27: Crystal Structure of Porphyromonas gingivalis Sialidase (PG_0352) D219A mutant bound to 6'-Sialyllactose (only Neu5Ac visible)
Classification: HYDROLASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-06-05
Authors: Clark, N.D., Malkowski, M.G.
PDB entry 8t28: The crystal structure of SrtC2 sortase from Actinomyces oris
Classification: HYDROLASE
Source organism: Actinomyces oris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-06-05
Authors: Osipiuk, J., Chang, C., Ton-That, H.L., Ton-That, H., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8t29: Crystal structure of SCV PTE RNA in complex with Fab BL3-6
Classification: RNA/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2023-06-05
Authors: Ojha, M., Koirala, D.
PDB entry 8t2a: Crystal structure of SCV PTE G18A mutant RNA in complex with Fab BL3-6
Classification: RNA/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2023-06-05
Authors: Ojha, M., Koirala, D.
PDB entry 8t2b: Crystal structure of SCV PTE G18C mutant RNA in complex with Fab BL3-6
Classification: RNA/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2023-06-05
Authors: Ojha, M., Koirala, D.
PDB entry 8t2c: Crystal structure of O-acetyl-L-serine sulfhydrylase A (CysK) from Staphylococcus aureus NCTC 8325 complexed with a CymR pentapeptide
Classification: PROTEIN BINDING
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-06-05
Authors: Pederick, J.L., Bruning, J.B., Vandborg, B.
PDB entry 8t2d: Ubiquitin variant i53:Mutant T12Y.T14E.L67R with 53BP1 Tudor domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.751 Å
Deposited: 2023-06-05
Authors: Partridge, J.R., Holden, J.K., Wibowo, A.S., Mulichak, A.
PDB entry 8t2e: BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody FP3
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-05
Authors: Pratap, P.P., Antansijevic, A., Ozorowski, G., Ward, A.B.
PDB entry 8t2f: BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody N289
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-06-05
Authors: Pratap, P.P., Antansijevic, A., Ozorowski, G., Ward, A.B.
PDB entry 8t2h: DYRK1A complex with DYR530
Classification: LIGASE/LIGASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-06-06
Authors: Montfort, W.R., Basantes, L.E.
PDB entry 8t2i: Negative stain EM assembly of MYC, JAZ, and NINJA complex
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.4 Å
Deposited: 2023-06-06
Authors: Zhou, X.E., Zhang, Y., Zhou, Y., He, Q., Cao, X., Kariapper, L., Suino-Powell, K., Zhu, Y., Zhang, F., Karsten, M.
PDB entry 8t2j: Structure of the catalytic domain of PPM1D/Wip1 serine/threonine phosphatase
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-06-06
Authors: Kumar, J.P., Kosek, D., Dyda, F.
PDB entry 8t2l: Crystal structure of LC3A in complex with the LIR of NSs4
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2023-06-06
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t2m: Crystal structure of GABARAP in complex with the LIR of NSs4
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2023-06-06
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t2n: Crystal structure of GABARAP in complex with the LIR of NSs3
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Rift Valley fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-06-06
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t2o: Crystal structure of SCV PTE G18U RNA in complex with Fab BL3-6
Classification: RNA/IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.29 Å
Deposited: 2023-06-06
Authors: Ojha, M., Koirala, D.
PDB entry 8t2p: 5TU-t1 - heterodimeric triplet polymerase ribozyme
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2023-06-06
Authors: McRae, E.K.S., Kristoffersen, E., Gallego, I., Hansen, K., Holliger, P., Andersen, E.S.
PDB entry 8t2r: Structure of a group II intron ribonucleoprotein in the pre-ligation (pre-2F) state
Classification: Transferase/RNA
Source organism: [Eubacterium] rectale
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-06-06
Authors: Xu, L., Liu, T., Chung, K., Pyle, A.M.
PDB entry 8t2s: Structure of a group II intron ribonucleoprotein in the pre-branching (pre-1F) state
Classification: Transferase/RNA
Source organism: [Eubacterium] rectale
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-06
Authors: Xu, L., Liu, T., Chung, K., Pyle, A.M.
PDB entry 8t2t: Structure of a group II intron ribonucleoprotein in the post-ligation (post-2F) state
Classification: Transferase/RNA
Source organism: [Eubacterium] rectale
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-06
Authors: Xu, L., Liu, T., Chung, K., Pyle, A.M.
PDB entry 8t2u: Cryo-EM Structures of Full-length Integrin alphaIIbbeta3 in Native Lipids complexed with Eptifibatide
Classification: CELL ADHESION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-06-06
Authors: Adair, B., Xiong, J.P., Yeager, M., Arnaout, M.A.
PDB entry 8t2v: Cryo-EM Structures of Full-length Integrin alphaIIbbeta3 in Native Lipids
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-06-06
Authors: Adair, B., Xiong, J.P., Yeager, M., Arnaout, M.A.
PDB entry 8t2x: Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t2y: Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t2z: Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t30: Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t31: Crystal structure of GABARAP in complex with the LIR of TP53INP2/DOR
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.096 Å
Deposited: 2023-06-07
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t32: Crystal structure of K48 acetylated GABARAP in complex with the LIR of TP53INP2/DOR
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.051 Å
Deposited: 2023-06-07
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t33: Crystal structure of K46 acetylated GABARAP in complex with the LIR of TP53INP2/DOR
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.599 Å
Deposited: 2023-06-07
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t35: Crystal structure of K51 acetylated LC3A in complex with the LIR of TP53INP2/DOR
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.902 Å
Deposited: 2023-06-07
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t36: Crystal structure of K49 acetylated LC3A in complex with the LIR of TP53INP2/DOR
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.852 Å
Deposited: 2023-06-07
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t3a: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t3b: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; Taura syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t3c: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; Taura syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t3d: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; Taura syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t3e: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; Taura syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t3f: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; Taura syndrome virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2023-06-07
Authors: Zhao, Y., Li, H.
PDB entry 8t3h: Solution NMR structure alpha-helix 3 of Cry10Aa protein
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-06-07
Authors: Barra, J.B., Freitas, C.D.P., Rios, T.B., Maximiano, M.R., Fernandes, F.C., Amorim, G.C., Porto, W.F., Grossi-de-Sa, M.F., Franco, O.F., Liao, L.M.
PDB entry 8t3i: Crystal structure of mutant exfoliative toxin C (ExhC) from Mammaliicoccus sciuri
Classification: TOXIN
Source organism: Mammaliicoccus sciuri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-06-07
Authors: Gismene, C., Calil, F.A., Hernandez Gonzalez, J.E., Ziem Nascimento, A.F., Santisteban, A.R.N., Arni, R.K., Barros Mariutti, R.
PDB entry 8t3j: Crystal structure of native exfoliative toxin C (ExhC) from Mammaliicoccus sciuri
Classification: TOXIN
Source organism: Mammaliicoccus sciuri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.705 Å
Deposited: 2023-06-07
Authors: Calil, F.A., Gismene, C., Hernandez Gonzalez, J.E., Ziem Nascimento, A.F., Santisteban, A.R.N., Arni, R.K., Barros Mariutti, R.
PDB entry 8t3k: Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP: BmrCD_IF-ATP2
Classification: TRANSLOCASE
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2023-06-07
Authors: Tang, Q., Mchaourab, H.
PDB entry 8t3l: TRPV1 in nanodisc bound with 2 LPA molecules in neighboring monomers
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-07
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8t3m: TRPV1 in nanodisc bound with 3 LPA molecules
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-07
Authors: Arnold, W.R., Julius, D., Cheng, Y.
PDB entry 8t3n: Solution NMR structure of synthetic peptide AMPCry10Aa_5 rational designed from Cry10Aa bacterial protein
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2023-06-07
Authors: Barra, J.B., Freitas, C.D.P., Rios, T.B., Maximiano, M.R., Fernandes, F.C., Amorim, G.C., Porto, W.F., Grossi-de-Sa, M.F., Franco, O.F., Liao, L.M.
PDB entry 8t3o: Cryo-EM structure of the TUG-891 bound FFA4-Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-06-07
Authors: Zhang, X., Tikhonova, I., Milligan, G., Zhang, C.
PDB entry 8t3p: Crystal structure of MonC1 (a flavin-dependent monooxygenase)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces virginiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-07
Authors: Wang, Q., Mathews, I.I., Kim, C.Y.
PDB entry 8t3q: Cryo-EM structure of the DHA bound FFA4-Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-06-07
Authors: Zhang, X., Tikhonova, I., Milligan, G., Zhang, C.
PDB entry 8t3r: Cryo-EM Analysis of AE1 Structure in 100 mM NaCl Buffer: Form1
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-06-07
Authors: Su, C.C.
PDB entry 8t3s: Cryo-EM structure of the Butyrate bound FFA2-Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-06-07
Authors: Zhang, X., Tikhonova, I., Milligan, G., Zhang, C.
PDB entry 8t3t: Structure of Bre1-nucleosome complex - state3
Classification: DNA BINDING PROTEIN/Transferase/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-06-07
Authors: Zhao, F., Hicks, C.W., Wolberger, C.
PDB entry 8t3u: Cryo-EM Analysis of AE1 Structure in 100 mM NaCl Buffer: Form2
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-06-07
Authors: Su, C.C.
PDB entry 8t3v: Cryo-EM structure of the DHA bound FFA1-Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-06-07
Authors: Zhang, X., Tikhonova, I., Milligan, G., Zhang, C.
PDB entry 8t3w: Structure of Bre1-nucleosome complex - state2
Classification: DNA BINDING PROTEIN/Transferase/DNA
Source organism: Saccharomyces cerevisiae; synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-06-07
Authors: Zhao, F., Hicks, C.W., Wolberger, C.
PDB entry 8t3x: TNA polymerase, closed ternary
Classification: TRANSFERASE/DNA
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2023-06-07
Authors: Maola, V., Chaput, J., Chim, N.
PDB entry 8t3y: Structure of Bre1-nucleosome complex - state1
Classification: DNA BINDING PROTEIN/Transferase/DNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); synthetic construct; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-06-08
Authors: Zhao, F., Hicks, C.W., Wolberger, C.
PDB entry 8t41: Crystal structure of aminopeptidase N from Mycobacterium tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-06-08
Authors: Park, H.W., Moss, D.L., Landry, S.J.
PDB entry 8t42: Model of TTLL6 MTBH1-2 bound to microtubule
Classification: LIGASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-08
Authors: Mahalingan, K.K., Grotjahn, D., Li, Y., Lander, G.C., Zehr, E.A., Roll-Mecak, A.
PDB entry 8t44: Cryo-EM Analysis of AE1 Structure in 100 mM NaHCO3 Buffer: Form1
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2023-06-08
Authors: Su, C.C.
PDB entry 8t45: Cryo-EM Analysis of AE1 Structure in 100 mM NaHCO3 Buffer: Form2
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2023-06-08
Authors: Su, C.C.
PDB entry 8t46: Transporter associated with antigen processing (TAP) in the apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-08
Authors: Lee, J., Oldham, M.L., Chen, J.
PDB entry 8t47: Cryo-EM Analysis of AE1 Structure in 100 mM NaHCO3 Buffer: Form3
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-06-08
Authors: Su, C.C.
PDB entry 8t48: The N4BP1 CUE-like domain in complex with linear di-Ubiquitin
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-08
Authors: Schubert, A.F., Harris, S.F.
PDB entry 8t49: MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-08
Authors: Ozorowski, G., Torres, J.L., Ward, A.B.
PDB entry 8t4a: MD65 N332-GT5 SOSIP in complex with RM_N332_36 Fab and RM20A3 Fab
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-06-08
Authors: Ozorowski, G., Torres, J.L., Ward, A.B.
PDB entry 8t4b: MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-08
Authors: Ozorowski, G., Torres, J.L., Ward, A.B.
PDB entry 8t4c: Membrane-associated thioredoxin oxidoreductase FetE from Campylobacter jejuni
Classification: OXIDOREDUCTASE
Source organism: Campylobacter jejuni subsp. jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-06-09
Authors: Chan, A.C., Murphy, M.E.
PDB entry 8t4d: MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-06-09
Authors: Ozorowski, G., Torres, J.L., Ward, A.B.
PDB entry 8t4e: Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-09
Authors: Lee, J., Oldham, M.L., Chen, J.
PDB entry 8t4f: Transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-09
Authors: Lee, J., Oldham, M.L., Chen, J.
PDB entry 8t4g: Transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-09
Authors: Lee, J., Oldham, M.L., Chen, J.
PDB entry 8t4h: Transporter associated with antigen processing (TAP) bound to the 8-mer peptide RRYQSTEL
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-06-09
Authors: Lee, J., Chen, J.
PDB entry 8t4i: Transporter associated with antigen processing (TAP) bound to the 7-mer peptide RRYSTEL
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2023-06-09
Authors: Lee, J., Oldham, M.L., Chen, J.
PDB entry 8t4j: Transporter associated with antigen processing (TAP) bound to the 14-mer peptide LPAVVGLSPGEQEY
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-06-09
Authors: Lee, J., Oldham, M.L., Chen, J.
PDB entry 8t4k: MD64 N332-GT5 SOSIP
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-06-09
Authors: Ozorowski, G., Torres, J.L., Ward, A.B.
PDB entry 8t4l: MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab
Classification: VIRAL PROTEIN/Immune System
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-09
Authors: Ozorowski, G., Torres, J.L., Ward, A.B.
PDB entry 8t4m: Closed human HCN1 F186C S264C bound to cAMP, reconstituted in LMNG + SPL
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-06-09
Authors: Burtscher, V., Mount, J., Cowgill, J., Chang, Y., Bickel, K., Yuan, P., Chanda, B.
PDB entry 8t4n: DB1976 Bound to the DNA Sequence 5'-CGCGAATTCGCG-3
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-06-09
Authors: Terrell, J.R., Poon, G.M.K., Wilson, W.D.
PDB entry 8t4o: Human mitochondrial serine hydroxymethyltransferase (SHMT2) in complex with PLP, glycine and AGF347 inhibitor with no glutamate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2023-06-09
Authors: Katinas, J.M., Dann III, C.E.
PDB entry 8t4p: Human mitochondrial serine hydroxymethyltransferase (SHMT2) in complex with PLP, glycine and di-glutamate AGF347 inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.801 Å
Deposited: 2023-06-09
Authors: Katinas, J.M., Dann III, C.E.
PDB entry 8t4q: 2.07 Angstrom CryoEM Structure of Heavy Chain Apoferritin from Mus Musculus From 200kV Microscope
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.07 Å
Deposited: 2023-06-09
Authors: Liu, Y., Pintilie, G., Chiu, W.
PDB entry 8t4r: RAG2-PHD finger in complex with H3K4tBuNle peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-06-09
Authors: Kean, K.M., Travis, C.R., Waters, M.L.
PDB entry 8t4s: MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit
Classification: Ribosome/Viral Protein
Source organism: Homo sapiens; Middle East respiratory syndrome-related coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-06-09
Authors: Devarkar, S.C., Xiong, Y.
PDB entry 8t4t: Crystal structure of LC3A in complex with the LIR of TP53INP2/DOR
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.359 Å
Deposited: 2023-06-10
Authors: Ali, M.G.H., Wahba, H.M., Cyr, N., Omichinski, J.G.
PDB entry 8t4v: Crystal structure of compound 1 bound to K-Ras(G12D)
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-06-10
Authors: Zhang, Z., Zheng, Q., Guiley, K.Z., Shokat, K.M.
PDB entry 8t4y: Human HCN1 F186C S264C C309A bound to cAMP, reconstituted in LMNG + SPL
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-06-12
Authors: Burtscher, V., Mount, J., Cowgill, J., Chang, Y., Bickel, K., Yuan, P., Chanda, B.
PDB entry 8t4z: T-cell receptor and lipid complex structure
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.691 Å
Deposited: 2023-06-12
Authors: Praveena, T., Rossjohn, J.
PDB entry 8t50: Open human HCN1 F186C S264C bound to cAMP, reconstituted in LMNG + SPL
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-12
Authors: Burtscher, V., Mount, J., Cowgill, J., Chang, Y., Bickel, K., Yuan, P., Chanda, B.
PDB entry 8t51: Crystal structure of Fab 3.10C2 bound to TREM2
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-12
Authors: Hsu, P.L., Wallweber, H.
PDB entry 8t52: HIV-1 Integrase Catalytic Core Domain (CCD) F185H/Y99H/A128T Mutant Complexed with EKC-110
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-06-12
Authors: Dinh, T., Kvaratskhelia, M.
PDB entry 8t53: S. enterica WbaP in a styrene maleic acid liponanoparticle
Classification: TRANSFERASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-06-12
Authors: Dodge, G.J., Imperiali, B.
PDB entry 8t55: Co-crystal structure of the WD-repeat domain of human WDR91 in complex with MR46654
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-12
Authors: Ahmad, H., Zeng, H., Dong, A., Li, Y., Yen, H., Seitova, A., Xu, J., Feng, J.W., Brown, P.J., Santhakumar, V., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 8t56: Structure of mechanically activated ion channel OSCA1.2 in peptidiscs
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-06-12
Authors: Burendei, B., Jojoa-Cruz, S., Lee, W.H., Ward, A.B.
PDB entry 8t57: Structure of mechanically activated ion channel OSCA2.3 in peptidiscs
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-06-12
Authors: Jojoa-Cruz, S., Burendei, B., Lee, W.H., Ward, A.B.
PDB entry 8t58: Structure of VHH-Fab complex with engineered FNQIKG elbow region
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-06-12
Authors: Filippova, E.V., Kossiakoff, A.A.
PDB entry 8t59: Crystal structure of Para.09 bound to TREM2
Classification: IMMUNE SYSTEM/PEPTIDE BINDING PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-12
Authors: Wallweber, H., Hsu, P.L.
PDB entry 8t5a: HIV-1 Integrase Catalytic Core Domain (CCD) F185H/Y99H/A128T Mutant Complexed with STP03-0404
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-06-12
Authors: Dinh, T., Kvaratskhelia, M.
PDB entry 8t5b: HIV-1 Integrase Catalytic Core Domain and C-Terminal Domain in Complex with Allosteric Integrase Inhibitor EKC-110
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-06-12
Authors: Dinh, T., Kvaratskhelia, M.
PDB entry 8t5c: Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Camelus bactrianus; Homo sapiens; Lassa virus Josiah
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2023-06-13
Authors: Gorman, J., Kwong, P.D.