LiteFold/PDB huggingface dataset:
PDB entry 8deq: Cryo-EM local refinement of antibody SKV09 in complex with VEEV alphavirus spike glycoprotein
Classification: VIRAL PROTEIN
Source organism: Macaca; Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2022-06-21
Authors: Casner, R.G., Verardi, R., Roederer, M., Shapiro, L.
PDB entry 8der: Cryo-EM local refinement of antibody SKV16 in complex with VEEV alphavirus spike glycoprotein
Classification: VIRAL PROTEIN
Source organism: Macaca; Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-06-21
Authors: Casner, R.G., Verardi, R., Roederer, M., Shapiro, L.
PDB entry 8des: Gokushovirus EC6098
Classification: VIRUS
Source organism: Escherichia phage EC6098
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-06-21
Authors: Lee, H., Fane, B.A., Hafenstein, S.L.
PDB entry 8deu: Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with CASP peptide complex
Classification: MEMBRANE PROTEIN
Source organism: Neisseria gonorrhoeae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2022-06-21
Authors: Lyu, M., Yu, E.W.
PDB entry 8dev: Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with colistin complex
Classification: MEMBRANE PROTEIN
Source organism: Neisseria gonorrhoeae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2022-06-21
Authors: Lyu, M., Yu, E.W.
PDB entry 8dew: Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with LL-37 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Neisseria gonorrhoeae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2022-06-21
Authors: Lyu, M., Yu, E.W.
PDB entry 8dex: type I-C Cascade
Classification: RNA BINDING PROTEIN/RNA
Source organism: Desulfovibrio vulgaris
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-06-21
Authors: O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.
PDB entry 8dey: Ternary complex structure of Cereblon-DDB1 bound to IKZF2(ZF2,3) and the molecular glue DKY709
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2022-06-21
Authors: Ma, X., Ornelas, E., Clifton, M.C.
PDB entry 8dez: Abp2D Receptor Binding Domain ACICU
Classification: CELL ADHESION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2022-06-21
Authors: Tamadonfar, K.O., Pinkner, J.P., Dodson, K.W., Kalas, V., Hultgren, S.J.
PDB entry 8df0: Abp1D receptor binding domain
Classification: CELL ADHESION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-06-21
Authors: Tamadonfar, K.O., Pinkner, J.S., Dodson, K.W., Hultgren, S.J.
PDB entry 8df1: Chi3l1 bound by antibody C59
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-06-21
Authors: Wrapp, D., McLellan, J.S.
PDB entry 8df2: The structure of the 'ALT' construct of the Amuc_1438 glycopeptidase
Classification: HYDROLASE
Source organism: Akkermansia muciniphila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-06-21
Authors: Medley, B.J., Boraston, A.B.
PDB entry 8df5: SARS-CoV-2 Beta RBD in complex with human ACE2 and S304 Fab and S309 Fab
Classification: VIRAL PROTEIN/Hydrolase/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-06-21
Authors: McCallum, M., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
PDB entry 8df7: Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair symmetric DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Methanopyrus kandleri; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.52 Å
Deposited: 2022-06-21
Authors: Osterman, A., Mondragon, A.
PDB entry 8df8: Structure of M. kandleri topoisomerase V in complex with DNA. 40 base pair symmetric DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Methanopyrus kandleri; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2022-06-21
Authors: Osterman, A., Mondragon, A.
PDB entry 8df9: Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Methanopyrus kandleri; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.24 Å
Deposited: 2022-06-21
Authors: Osterman, A., Mondragon, A.
PDB entry 8dfa: type I-C Cascade bound to ssDNA target
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Desulfovibrio vulgaris; Desulfovibrio vulgaris str. Hildenborough; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-06-21
Authors: O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.
PDB entry 8dfb: Structure of M. kandleri topoisomerase V in complex with DNA. 39 base pair symmetric DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Methanopyrus kandleri; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2022-06-21
Authors: Osterman, A., Mondragon, A.
PDB entry 8dfc: CryoEM structure of the 1:1 ADP-tetrafluoroaluminate stabilized nitrogenase complex from Azotobacter vinelandii
Classification: METAL BINDING PROTEIN, OXIDOREDUCTASE
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2022-06-21
Authors: Warmack, R.A., Rees, D.C.
PDB entry 8dfd: CryoEM structure of the 2:1 ADP-tetrafluoroaluminate stabilized nitrogenase complex from Azotobacter vinelandii
Classification: METAL BINDING PROTEIN, OXIDOREDUCTASE
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.12 Å
Deposited: 2022-06-21
Authors: Warmack, R.A., Rees, D.C.
PDB entry 8dfe: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) S144L Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-06-22
Authors: Lewandowski, E.M., Jacobs, L.M.C., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8dfg: Crystal structure of potently neutralizing human monoclonal antibody 42D6 Fab in complex with MSP1-19
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-22
Authors: Patel, P.N., Tang, W.K., Tolia, N.H.
PDB entry 8dfh: Crystal structure of non-neutralizing / interfering human monoclonal antibody 42C3 Fab in complex with MSP1-19
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-22
Authors: Patel, P.N., Tang, W.K., Tolia, N.H.
PDB entry 8dfi: Crystal structure of moderately neutralizing / interfering human monoclonal antibody 42C11 Fab in complex with MSP1-19
Classification: STRUCTURAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-06-22
Authors: Patel, P.N., Tang, W.K., Tolia, N.H.
PDB entry 8dfk: X-ray crystal structure of Bacillus subtilis ComEA
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis subsp. subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-06-22
Authors: Ahmed, I., Khaja, F.T., Neiditch, M.B.
PDB entry 8dfl: Structure of human Kv1.3 with A0194009G09 nanobodies (alternate conformation)
Classification: IMMUNE SYSTEM
Source organism: Aequorea victoria; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-06-22
Authors: Meyerson, J.R., Selvakumar, P.
PDB entry 8dfm: Ectodomain of full-length wild-type KIT-SCF dimers
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2022-06-22
Authors: Krimmer, S.G., Bertoletti, N., Mi, W., Schlessinger, J.
PDB entry 8dfn: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) H164N Mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2022-06-22
Authors: Lewandowski, E.M., Butler, S.G., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8dfo: type I-C Cascade bound to AcrIC4
Classification: RNA BINDING PROTEIN/RNA
Source organism: Desulfovibrio vulgaris; Pseudomonas aeruginosa phage DMS3mVir
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-06-22
Authors: O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.
PDB entry 8dfp: Ectodomain of full-length KIT(DupA502,Y503)-SCF dimers
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2022-06-22
Authors: Bertoletti, N., Krimmer, S.G., Mi, W., Schlessinger, J.
PDB entry 8dfq: Ectodomain of full-length KIT(T417I,delta418-419)-SCF dimers
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2022-06-22
Authors: Krimmer, S.G., Bertoletti, N., Mi, W., Schlessinger, J.
PDB entry 8dfr: REFINED CRYSTAL STRUCTURES OF CHICKEN LIVER DIHYDROFOLATE REDUCTASE. 3 ANGSTROMS APO-ENZYME AND 1.7 ANGSTROMS NADPH HOLO-ENZYME COMPLEX
Classification: OXIDOREDUCTASE(CHNH(D)-NAD+ OR NADP+(A))
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 1989-05-30
Authors: Matthews, D.A., Oatley, S.J., Burridge, J., Kaufman, B.T., Xuong, N.-H., Kraut, J.
PDB entry 8dfs: type I-C Cascade bound to AcrIF2
Classification: RNA BINDING PROTEIN/RNA
Source organism: Casadabanvirus D3112; Desulfovibrio vulgaris; Desulfovibrio vulgaris str. Hildenborough
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-06-22
Authors: O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.
PDB entry 8dft: Cryo-EM structure of conjugative pili from Pyrobaculum calidifontis
Classification: PROTEIN FIBRIL
Source organism: Pyrobaculum calidifontis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-06-22
Authors: Beltran, L.C., Egelman, E.H.
PDB entry 8dfu: Cryo-EM structure of conjugation pili from Aeropyrum pernix
Classification: PROTEIN FIBRIL
Source organism: Aeropyrum pernix
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2022-06-22
Authors: Beltran, L.C., Egelman, E.H.
PDB entry 8dfv: Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex IIa
Classification: RNA BINDING PROTEIN/RNA
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2022-06-22
Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.
PDB entry 8dfw: Crystal Structure of Human BTN2A1 in Complex With Vgamma9-Vdelta2 T Cell Receptor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-06-22
Authors: Fulford, T.S., Soliman, C., Castle, R.G., Rigau, M., Ruan, Z., Dolezal, O., Seneviratna, R., Brown, H.G., Hanssen, E., Hammet, A., Li, S., Redmond, S.J., Chung, A., Gorman, M.A., Parker, M.W., Patel, O., Peat, T.S., Newman, J., Behren, A., Gherardin, N.A., Godfrey, D.I., Uldrich, A.P.
PDB entry 8dfx: Crystal structure of Human BTN2A1-BTN3A1 Ectodomain Complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 5.55 Å
Deposited: 2022-06-22
Authors: Fulford, T.S., Soliman, C., Castle, R.G., Rigau, M., Ruan, Z., Dolezal, O., Seneviratna, R., Brown, H.G., Hanssen, E., Hammet, A., Li, S., Redmond, S.J., Chung, A., Gorman, M.A., Parker, M.W., Patel, O., Peat, T.S., Newman, J., Behren, A., Gherardin, N.A., Godfrey, D.I., Uldrich, A.P.
PDB entry 8dfy: Crystal structure of Human BTN2A1 Ectodomain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.552 Å
Deposited: 2022-06-22
Authors: Fulford, T.S., Soliman, C., Castle, R.G., Rigau, M., Ruan, Z., Dolezal, O., Seneviratna, R., Brown, H.G., Hanssen, E., Hammet, A., Li, S., Redmond, S.J., Chung, A., Gorman, M.A., Parker, M.W., Patel, O., Peat, T.S., Newman, J., Behren, A., Gherardin, N.A., Godfrey, D.I., Uldrich, A.P.
PDB entry 8dfz: NMR shows why a small chemical change almost abolishes the antimicrobial activity of GccF
Classification: ANTIMICROBIAL PROTEIN
Source organism: Lactiplantibacillus plantarum
Experimental method: SOLUTION NMR
Deposited: 2022-06-23
Authors: Harjes, E., Edwards, P.J.B., Norris, G.
PDB entry 8dg0: Crystal Structure of EcDsbA in a complex with Urea
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-06-23
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8dg1: Crystal Structure of EcDsbA in a complex with DMSO
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-06-23
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8dg2: Crystal Structure of EcDsbA in a complex with DMSO
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-06-23
Authors: Whitehouse, R.L., Ilyichova, O.V., Taylor, A.J.
PDB entry 8dg4: Group A streptococcus Enolase K252A, K255A, K434A, K435A mutant
Classification: LYASE
Source organism: Streptococcus sp. 'group A'
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2022-06-23
Authors: Tjia-Fleck, S.C., Readnour, B.M., Castellino, F.J.
PDB entry 8dg5: Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex IIb
Classification: RNA BINDING PROTEIN/RNA
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2022-06-23
Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.
PDB entry 8dg6: Scaffold Hopping via Ring Opening Enables Identification of Acyclic Compounds as New Complement Factor D Inhibitors
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.986 Å
Deposited: 2022-06-23
Authors: Raman, K., Babu, Y.S.
PDB entry 8dg7: Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex III
Classification: RNA BINDING PROTEIN/RNA
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2022-06-23
Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.
PDB entry 8dg8: Cryo-EM Structure of HPIV3 prefusion F trimer in complex with 3x1 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human parainfluenza 3 virus (strain NIH 47885)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2022-06-23
Authors: Rodarte, J.V., Pancera, M.
PDB entry 8dg9: Cryo-EM Structure of RSV prefusion F trimer in complex with three MxR Fabs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Respiratory syncytial virus A2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2022-06-23
Authors: Rodarte, J.V., Pancera, M.
PDB entry 8dga: Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex IV
Classification: RNA BINDING PROTEIN/RNA
Source organism: Drosophila melanogaster; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2022-06-23
Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.
PDB entry 8dgb: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) Q192T Mutant in Complex with Inhibitor GC376
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2022-06-23
Authors: Lewandowski, E.M., Jacobs, L.M.C., Hu, Y., Tan, H., Wang, J., Chen, Y.
PDB entry 8dgc: Avs3 bound to phage PhiV-1 terminase
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia phage PhiV-1; Salmonella enterica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-06-23
Authors: Wilkinson, M.E., Gao, L., Strecker, J., Makarova, K.S., Macrae, R.K., Koonin, E.V., Zhang, F.
PDB entry 8dgd: Crystal Structure of GAF domain-containing protein, from Klebsiella pneumoniae
Classification: UNKNOWN FUNCTION
Source organism: Klebsiella pneumoniae subsp. pneumoniae HS11286
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-06-23
Authors: Seattle Structural Genomics Center for Infectious Disease, Delker, S.L., Weiss, M.J., Lorimer, D.D., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dge: BoGH13ASus from Bacteroides ovatus
Classification: HYDROLASE
Source organism: Bacteroides ovatus ATCC 8483
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-06-23
Authors: Brown, H.A., DeVeaux, A.L., Koropatkin, N.M.
PDB entry 8dgf: Avs4 bound to phage PhiV-1 portal
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli; Escherichia phage PhiV-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-06-23
Authors: Wilkinson, M.E., Gao, L., Strecker, J., Makarova, K.S., Macrae, R.K., Koonin, E.V., Zhang, F.
PDB entry 8dgg: Structure of glycosylated LAG-3 homodimer
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.78 Å
Deposited: 2022-06-23
Authors: Silberstein, J.L., Mathews, I.I., Frank, J.A., Chan, K.-W., Fernandez, D., Du, J., Wang, J., Kong, X.-P., Cochran, J.R.
PDB entry 8dgh: NMR Structure of calmodulin bound to C-terminal site in the beta-subunit of cyclic nucleotide-gated channel
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2022-06-23
Authors: Bej, A., Ames, J.B.
PDB entry 8dgi: Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex Ia
Classification: RNA BINDING PROTEIN/RNA
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2022-06-23
Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.
PDB entry 8dgj: Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex Ib
Classification: RNA BINDING PROTEIN/RNA
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2022-06-23
Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.
PDB entry 8dgk: NMR structure of calmodulin bound to N-terminal site in the beta-subunit of cyclic nucleotide-gated channel
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2022-06-23
Authors: Bej, A., Ames, J.B.
PDB entry 8dgl: Crystal Structure of the RdfS Excisionase
Classification: DNA BINDING PROTEIN
Source organism: Mesorhizobium japonicum R7A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-06-24
Authors: Verdonk, C.J., Ramsay, J.P., Marshall, A.C., Bond, C.S.
PDB entry 8dgm: 14-3-3 epsilon bound to phosphorylated PEAK1 (pT1165) peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-06-24
Authors: Roy, M.J., Hardy, J.M., Lucet, I.S.
PDB entry 8dgn: 14-3-3 epsilon bound to phosphorylated PEAK2 (pS826) peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2022-06-24
Authors: Roy, M.J., Hardy, J.M., Lucet, I.S.
PDB entry 8dgo: Growth Factor Receptor-Bound Protein 2 (Grb2) bound to phosphorylated PEAK3 (pY24) peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-24
Authors: Roy, M.J., Hardy, J.M., Lucet, I.S.
PDB entry 8dgp: 14-3-3 epsilon bound to phosphorylated PEAK3 (pS69) peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-06-24
Authors: Roy, M.J., Hardy, J.M., Lucet, I.S.
PDB entry 8dgq: Crystal structure of p120RasGAP SH2-SH3-SH2 in complex with p190RhoGAP doubly phosphorylated peptide
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-06-24
Authors: Stiegler, A.L., Vish, K.J., Boggon, T.J.
PDB entry 8dgr: Crystal Structure of scFv(F8) Antibody Fragment
Classification: IMMUNE SYSTEM
Source organism: Artichoke mottled crinkle virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2022-06-24
Authors: Mrozek, A., Park, H.W.
PDB entry 8dgs: Cryo-EM structure of a RAS/RAF complex (state 1)
Classification: TRANSFERASE
Source organism: Homo sapiens; Spodoptera exigua
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-06-24
Authors: Eck, M.J., Jeon, H., Park, E., Rawson, S.
PDB entry 8dgt: Cryo-EM structure of a RAS/RAF complex (state 2)
Classification: TRANSFERASE
Source organism: Homo sapiens; Spodoptera exigua
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-06-24
Authors: Eck, M.J., Jeon, H., Park, E., Rawson, S.
PDB entry 8dgu: Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC25.106 isolated from a vaccinated COVID-19 convalescent
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-06-24
Authors: Liu, H., Wilson, I.A.
PDB entry 8dgv: Crystal structure of MERS-CoV spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC99.103 isolated from a vaccinated COVID-19 convalescent
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-24
Authors: Liu, H., Wilson, I.A.
PDB entry 8dgw: Crystal structure of HCoV-HKU1 spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC95.108 isolated from a vaccinated COVID-19 convalescent
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-06-24
Authors: Liu, H., Wilson, I.A.
PDB entry 8dgx: Crystal structure of MERS-CoV spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC68.109 isolated from a vaccinated COVID-19 convalescent
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2022-06-24
Authors: Liu, H., Wilson, I.A.
PDB entry 8dgy: Structure of MERS 3CL protease in complex with the cyclopropane based inhibitor 16d (high resolution)
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-06-24
Authors: Lovell, S., Liu, L., Battaile, K.P., Nguyen, H.N., Chamandi, S.D., Picard, H.R., Madden, T.K., Thruman, H.A., Kim, Y., Groutas, W.C., Chang, K.O.
PDB entry 8dgz: Caspase-7 bound to substrate mimic and allosteric inhibitor
Classification: APOPTOSIS/APOPTOSIS INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-06-24
Authors: Propp, J., Kalenkiewicz, A., Kathryn, F.H., Spies, M.A.
PDB entry 8dh0: T7 RNA polymerase elongation complex with unnatural base dDs
Classification: Transferase/DNA/RNA
Source organism: Escherichia phage T7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-06-24
Authors: Oh, J., Wang, D.
PDB entry 8dh1: T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair
Classification: Transferase/DNA/RNA
Source organism: Escherichia phage T7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-06-24
Authors: Oh, J., Wang, D.
PDB entry 8dh2: T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch
Classification: Transferase/DNA/RNA
Source organism: Escherichia phage T7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-06-24
Authors: Oh, J., Wang, D.
PDB entry 8dh3: T7 RNA polymerase elongation complex with unnatural base dPa
Classification: Transferase/DNA/RNA
Source organism: Escherichia phage T7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-06-24
Authors: Oh, J., Wang, D.
PDB entry 8dh4: T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair
Classification: Transferase/DNA/RNA
Source organism: Escherichia phage T7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-06-24
Authors: Oh, J., Wang, D.
PDB entry 8dh5: T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch
Classification: Transferase/DNA/RNA
Source organism: Escherichia phage T7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-06-24
Authors: Oh, J., Wang, D.
PDB entry 8dh6: Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2022-06-25
Authors: Godoy, A.S., Song, Y., Cheruvara, H., Quigley, A., Oliva, G.
PDB entry 8dh7: Cryo-EM structure of Saccharomyces cerevisiae Succinyl-CoA:acetate CoA-transferase (Ach1p)
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2022-06-25
Authors: Godoy, A.S., Song, Y., Cheruvara, H., Quigley, A., Oliva, G.
PDB entry 8dh8: Leptin-bound leptin receptor complex-full ECD
Classification: HORMONE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.9 Å
Deposited: 2022-06-25
Authors: Saxton, R.A., Caveney, N.A., Garcia, K.C.
PDB entry 8dh9: Leptin-bound leptin receptor complex-D3-D7
Classification: HORMONE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-06-25
Authors: Saxton, R.A., Caveney, N.A., Garcia, K.C.
PDB entry 8dha: Leptin-bound leptin receptor complex- focused interaction
Classification: HORMONE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-06-25
Authors: Saxton, R.A., Caveney, N.A., Garcia, K.C.
PDB entry 8dhb: Active FLCN GAP complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2022-06-25
Authors: Jansen, R.M., Hurley, J.H.
PDB entry 8dhc: Crystal structure of an i-motif from the HRAS promoter region
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-06-27
Authors: Yatsunyk, L.A., Li, K.S.
PDB entry 8dhd: Neutron crystal structure of maltotetraose bound tmMBP
Classification: SUGAR BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2022-06-27
Authors: Cuneo, M.J., Shukla, S., Myles, D.A.
PDB entry 8dhe: Tannerella forsythia beta-glucuronidase (mL1)
Classification: HYDROLASE
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-27
Authors: Lietzan, A.D., Redinbo, M.R.
PDB entry 8dhf: DHODH IN COMPLEX WITH LIGAND 11
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-06-27
Authors: Shaffer, P.L.
PDB entry 8dhg: DHODH IN COMPLEX WITH LIGAND 19
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-06-27
Authors: Shaffer, P.L.
PDB entry 8dhh: DHODH IN COMPLEX WITH LIGAND 29
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-06-27
Authors: Shaffer, P.L.
PDB entry 8dhi: Crystal Structure of Clostridioides difficile Protein Tyrosine Phosphatase at pH 8.5
Classification: HYDROLASE
Source organism: Clostridioides difficile 6050
Experimental method: X-RAY DIFFRACTION
Resolution: 1.588 Å
Deposited: 2022-06-27
Authors: Lountos, G.T., Tropea, J.E.
PDB entry 8dhj: Crystal structure of Clostridioides difficile Protein Tyrosine Phosphatase at pH 7.5
Classification: HYDROLASE
Source organism: Clostridioides difficile 6050
Experimental method: X-RAY DIFFRACTION
Resolution: 1.483 Å
Deposited: 2022-06-27
Authors: Lountos, G.T., Tropea, J.E.
PDB entry 8dhk: Crystal structure of human Sulfide Quinone Oxidoreductase K207E
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-27
Authors: Mascarenhas, R.N., Ludlum, A., Banerjee, R.
PDB entry 8dhl: Tannerella forsythia beta-glucuronidase (L2)
Classification: HYDROLASE
Source organism: Tannerella forsythia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-27
Authors: Lietzan, A.D., Redinbo, M.R.
PDB entry 8dhm: Human TMEM175 in complex with 4-aminopyridine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2022-06-27
Authors: Oh, S., Hite, R.K.
PDB entry 8dhn: The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 6-Bromo-3-hydroxy-2-(5-methyl-1,2,4-oxadiazol-3-yl)pyridin-4(1H)-one
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-06-27
Authors: Kohlbrand, A.J., Stokes, R.W., Karges, J., Seo, H., Sankaran, B., Cohen, S.M.
PDB entry 8dhr: An ester mutant of SfGFP
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-06-28
Authors: Reddi, R., Valiyaveetil, F.I.
PDB entry 8dht: Crystal structure of a typeIII Rubisco
Classification: LYASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.699 Å
Deposited: 2022-06-28
Authors: Qingqiu, H.
PDB entry 8dhu: Crystal structure of LARP-DM15 from Drosophila melanogaster bound to m7GpppC
Classification: RNA BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.295 Å
Deposited: 2022-06-28
Authors: Nguyen, E., Berman, A.J.
PDB entry 8dhv: Treponema lecithinolyticum beta-glucuronidase
Classification: HYDROLASE
Source organism: Treponema lecithinolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-06-28
Authors: Lietzan, A.D., Redinbo, M.R.
PDB entry 8dhw: Treponema lecithinolyticum beta-glucuronidase in complex with a UNC4917-glucuronide conjugate
Classification: HYDROLASE
Source organism: Treponema lecithinolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-06-28
Authors: Lietzan, A.D., Redinbo, M.R.
PDB entry 8dhx: Human liver ferritin
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2022-06-28
Authors: Zhang, Z.
PDB entry 8dhy: N-terminal fragment of MsbA fused to GFP in complex with copper(II)
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria; Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-06-28
Authors: Schrecke, S.R., Zhang, T., Lyu, J., Laganowsky, A.
PDB entry 8dhz: NMR Structure of Ac-hGal(17-30)NH2, an N-terminally acetylated fragment of the C-terminus of human galanin
Classification: NEUROPEPTIDE
Experimental method: SOLUTION NMR
Deposited: 2022-06-28
Authors: Kraichely, K.N., Hendy, C.M., Parnham, S., Giuliano, M.W.
PDB entry 8di0: Bfo2290: Tannerella forsythia chondroitin sulfate A sulfatase
Classification: LYASE
Source organism: Tannerella forsythia (strain ATCC 43037 / JCM 10827 / CCUG 21028 A / KCTC 5666 / FDC 338)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-06-28
Authors: Suits, M.D.L.
PDB entry 8di1: Bfo2294: Tannerella forsythia 2-Keto-3-deoxy-6-phosphogluconate aldolase (KDPG) and 4-Hydroxy-2-oxoglutarate aldolase (KHG)
Classification: LYASE
Source organism: Tannerella forsythia (strain ATCC 43037 / JCM 10827 / CCUG 21028 A / KCTC 5666 / FDC 338)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-06-28
Authors: Suits, M.D.L.
PDB entry 8di2: Site 2 insulin receptor binding peptide IM459N21
Classification: SIGNALING PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-06-28
Authors: Lawrence, M.C., Hu, H., Martinez, F.J., Espinosa, J.F.
PDB entry 8di3: Polymorphism in SARS-CoV-2 Nsp5 main protease reveals differences in cleavage of viral and host substrates
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-28
Authors: Lu, J., Khan, M.B., Young, H.S., Lemieux, M.J.
PDB entry 8di4: Discovery of MK-8189, a highly potent and selective PDE10A inhibitor for the treatment of schizophrenia
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.016 Å
Deposited: 2022-06-28
Authors: Hayes, R.P., Yan, Y.
PDB entry 8di5: Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6 (focused refinement of RBD and VH F6)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-06-28
Authors: Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Subramaniam, S.
PDB entry 8di7: CMY-2
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2022-06-28
Authors: Ahmadvand, P., Call, D.R.
PDB entry 8dib: Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2022-06-29
Authors: Singh, I., Shoichet, B.K.
PDB entry 8dic: Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-06-29
Authors: Singh, I., Shoichet, B.K.
PDB entry 8did: Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-06-29
Authors: Singh, I., Shoichet, B.K.
PDB entry 8die: Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-06-29
Authors: Singh, I., Shoichet, B.K.
PDB entry 8dif: Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-06-29
Authors: Singh, I., Shoichet, B.K.
PDB entry 8dig: Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-06-29
Authors: Singh, I., Shoichet, B.K.
PDB entry 8dih: Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2022-06-29
Authors: Singh, I., Shoichet, B.K.
PDB entry 8dii: Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-06-29
Authors: Singh, I., Shoichet, B.K.
PDB entry 8dij: NMR Structure of Streptococcal Protein GB1 Backbone Modified Variant: beta-ACPC24, beta-3-Lys28, beta-3-Lys31, beta-ACPC35
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-06-29
Authors: Rao, S.R., Reinert, Z.E.
PDB entry 8dik: Redox properties and PAS domain structure of the E. coli Energy Sensor Aer indicate a multi-state sensing mechanism
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-06-29
Authors: Maschmann, Z., Chua, T.K., Crane, B.R.
PDB entry 8dil: Crystal structure of putative nitroreductase from Salmonella enterica
Classification: OXIDOREDUCTASE
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-06-29
Authors: Chang, C., Skarina, T., Mesa, N., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8dim: CryoEM structure of Influenza A virus A/Ohio/09/2015 hemagglutinin bound to CR6261 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-06-29
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8din: The complex structure between human IgG1 Fc and its high affinity receptor FcgRI H174R variant
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-06-29
Authors: Lu, J., Sun, P.D.
PDB entry 8dio: Crystal structure of LARP1-DM15 from Danio rerio bound to m7GpppC
Classification: RNA BINDING PROTEIN
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-29
Authors: Nguyen, E., Berman, A.J.
PDB entry 8dip: The crystal structure of I38T mutant PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023030
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-06-29
Authors: Cuypers, M.G., Slavish, J.P., Rankovic, Z., White, S.W.
PDB entry 8diq: Tubulin-RB3_SLD-TTL in complex with SB226
Classification: CELL CYCLE/INHIBITOR
Source organism: Gallus gallus; Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.395 Å
Deposited: 2022-06-29
Authors: White, S.W., Yun, M.
PDB entry 8dir: The complex structure between human IgG1 Fc and its high affinity receptor FcgRI H174R variant
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-06-29
Authors: Lu, J., Sun, P.D.
PDB entry 8dis: CryoEM structure of Influenza A virus A/Melbourne/1/1946 (H1N1) hemagglutinin bound to CR6261 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-06-29
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8dit: Cryo-EM structure of a HOPS core complex containing Vps33, Vps16, and Vps18
Classification: PROTEIN TRANSPORT
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2022-06-29
Authors: Port, S.A., Farrell, P.D., Jeffrey, P.D., DiMaio, F., Hughson, F.M.
PDB entry 8diu: Cryo-EM structure of influenza A virus A/Bayern/7/1995 hemagglutinin bound to CR6261 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2022-06-29
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8div: Crystal structure of NavAb I22V as a basis for the human Nav1.7 Inherited Erythromelalgia I136V mutation
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri RM4018
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2022-06-29
Authors: Wisedchaisri, G., Gamal El-Din, T.M., Powell, N.M., Zheng, N., Catterall, W.A.
PDB entry 8diw: Crystal structure of NavAb E96P as a basis for the human Nav1.7 Inherited Erythromelalgia S211P mutation
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri RM4018
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2022-06-29
Authors: Wisedchaisri, G., Gamal El-Din, T.M., Zheng, N., Catterall, W.A.
PDB entry 8dix: Structure of NavAb L98R as a basis for the human Nav1.7 Inherited Erythromelalgia L823R mutation
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri RM4018
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-06-29
Authors: Wisedchaisri, G., Gamal El-Din, T.M., Zheng, N., Catterall, W.A.
PDB entry 8diy: Crystal structure of NavAb L101S as a basis for the human Nav1.7 Inherited Erythromelalgia F216S mutation
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri RM4018
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-06-29
Authors: Wisedchaisri, G., Gamal El-Din, T.M., Zheng, N., Catterall, W.A.
PDB entry 8diz: Crystal structure of NavAb I119T as a basis for the human Nav1.7 Inherited Erythromelalgia I234T mutation
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri RM4018
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2022-06-29
Authors: Wisedchaisri, G., Gamal El-Din, T.M., Zheng, N., Catterall, W.A.
PDB entry 8dj0: Crystal structure of NavAb L123T as a basis for the human Nav1.7 Inherited Erythromelalgia I848T mutation
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri RM4018
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-06-29
Authors: Wisedchaisri, G., Gamal El-Din, T.M., Zheng, N., Catterall, W.A.
PDB entry 8dj1: Crystal structure of NavAb V126T as a basis for the human Nav1.7 Inherited Erythromelalgia S241T mutation
Classification: MEMBRANE PROTEIN
Source organism: Aliarcobacter butzleri RM4018
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-06-29
Authors: Wisedchaisri, G., Gamal El-Din, T.M., Zheng, N., Catterall, W.A.
PDB entry 8dj2: Intramolecular ester bond-containing repeat domain from Chlamydia trachomatis adhesin
Classification: CELL ADHESION
Source organism: Chlamydia trachomatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-06-29
Authors: Choksi, Z.N., Young, P.G., Squire, C.J.
PDB entry 8dj3: Caspase-7 bound to novel allosteric inhibitor
Classification: APOPTOSIS/APOPTOSIS INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-06-29
Authors: Propp, J., Kalenkiewicz, A., Kathryn, F.H., Spies, M.A.
PDB entry 8dj4: NMR Solution Structure of C-terminally amidated, Full-length Human Galanin
Classification: NEUROPEPTIDE
Experimental method: SOLUTION NMR
Deposited: 2022-06-30
Authors: Wilkinson, R.E., Kraichely, K.N., Buchanan, L.E., Parnham, S., Giuliano, M.W.
PDB entry 8dj6: Sliding-clamp-ImuB peptide
Classification: DNA BINDING PROTEIN
Source organism: Mycolicibacterium thermoresistibile ATCC 19527; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-06-30
Authors: Kapur, M.K., Gray, O.J., Honzatko, R.H., Nelson, S.N.
PDB entry 8dj7: The complex structure between human IgG1 Fc and its high affinity receptor FcgRI H174R variant
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2022-06-30
Authors: Lu, J., Sun, P.D.
PDB entry 8dj8: Crystal Structure of Calgreen 1 protein
Classification: FLUORESCENT PROTEIN
Source organism: Corynactis californica
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-06-30
Authors: Hung, L.-W., Nguyen, H.B., Waldo, G.
PDB entry 8dj9: Carbonic Anhydrase II in complex with Ibuprofen
Classification: METAL BINDING PROTEIN, Lyase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-06-30
Authors: Combs, J.C., McKenna, R., Andring, J.T.
PDB entry 8dja: Cryo-EM structure of mouse PrP23-144 amyloid fibrils (polymorph 1)
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2022-06-30
Authors: Li, Q., Surewicz, W.K.
PDB entry 8djb: MthK-A90L mutant in closed state with 0 Ca2+
Classification: ION CHANNEL
Source organism: Methanothermobacter thermautotrophicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2022-06-30
Authors: Agarwal, S., Nimigean, C.M.
PDB entry 8djc: CRYSTAL STRUCTURE OF GLYCOGEN SYNTHASE KINASE 3 BETA COMPLEXED WITH (4S)-N-{4-[(2S)-2-methylmorpholin-4-yl] pyridin-3-yl}-2-phenylimidazo[1,2-b]pyridazine-8-carboxamide
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.463 Å
Deposited: 2022-06-30
Authors: Lewis, H.A., Muckelbauer, J.K.
PDB entry 8djd: CRYSTAL STRUCTURE OF GLYCOGEN SYNTHASE KINASE 3 BETA COMPLEXED WITH 3-[(CYCLOPROPYLMETHYL)AMINO] -N-(4-PHENYLPYRIDIN-3-YL)IMIDAZO[1,2-B]PYRIDAZINE-8-CARBOX AMIDE
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.205 Å
Deposited: 2022-06-30
Authors: Lewis, H.A., Muckelbauer, J.K.
PDB entry 8dje: CRYSTAL STRUCTURE OF GLYCOGEN SYNTHASE KINASE 3 BETA COMPLEXED WITH 3-[(CYCLOPROPYLMETHYL)AMINO] -N-(4-PHENYLPYRIDIN-3-YL)IMIDAZO[1,2-B]PYRIDAZINE-8-CARBOX AMIDE
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.374 Å
Deposited: 2022-06-30
Authors: Lewis, H.A., Muckelbauer, J.K.
PDB entry 8djf: Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound tetrahedral intermediate
Classification: HYDROLASE
Source organism: Rhodopseudomonas palustris CGA009
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-06-30
Authors: Bingman, C.A., Hall, B.W., Smith, R.W., Fox, B.G., Donohue, T.J.
PDB entry 8djg: ADGRL3-lectin domain in complex with an activating synthetic antibody fragment
Classification: SIGNALING PROTEIN/Immune System
Source organism: Homo sapiens; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-06-30
Authors: Kordon, S.P., Bandekar, S.J., Arac, D.