LiteFold/PDB huggingface dataset:
PDB entry 8jpr: Cryo-EM structure of Y553C human ClC-6
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-06-12
Authors: Zhang, S.S.
PDB entry 8jps: Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2023-06-12
Authors: Banerjee, R., Khanppnavar, B., Maharana, J., Saha, S., Korkhov, V.M., Shukla, A.K.
PDB entry 8jpt: Crystal Structure of the acyltransferase domain from the eighth module of the spinosad polyketide synthase
Classification: TRANSFERASE
Source organism: Saccharopolyspora spinosa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.26 Å
Deposited: 2023-06-12
Authors: Huang, S., Zheng, J.
PDB entry 8jpu: Crystal Structure of the acyltransferase domain from the fifth module of the tylosin polyketide synthase
Classification: TRANSFERASE
Source organism: Streptomyces fradiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-06-12
Authors: Huang, S., Zheng, J.
PDB entry 8jpv: Glutamyl-tRNA synthetase from Methylacidiphilum fumariolicum
Classification: LIGASE
Source organism: Methylacidiphilum fumariolicum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-06-13
Authors: Dev, A., Basu, G.
PDB entry 8jpw: Crystal Structure of Single-chain L-Glutamate Oxidase Mutant from Streptomyces sp. X-119-6
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. X-119-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2023-06-13
Authors: Yamaguchi, H., Takahashi, K., Tatsumi, M., Tagami, U., Mizukoshi, T., Miyano, H., Sugiki, M.
PDB entry 8jpx: Cryo-EM structure of PfAgo-guide DNA-target DNA complex
Classification: GENE REGULATION
Source organism: Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-13
Authors: Zhuang, L.
PDB entry 8jpy: Solution NMR Structure of Zinc-fingers 1 and 2 (fragment 257-320) from human Insulinoma-associated protein 1(INSM1)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-06-13
Authors: He, X.L., Yang, Y.H.
PDB entry 8jpz: The thermostability mutant Gox_M8 from Aspergillus niger
Classification: OXIDOREDUCTASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-06-13
Authors: Tu, T., Yan, Y.R.
PDB entry 8jq0: Crystal structure of ZBTB48 ZF10-11-C in complex with CIITA promoter
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-06-13
Authors: Li, F.D., Wang, S.M.
PDB entry 8jq1: Solution NMR Structure of zinc fingers 1-2 (fragment 257-320) from human insulinoma-associated protein 1(INSM1)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-06-13
Authors: He, X.L., Yang, Y.H.
PDB entry 8jq3: Crystal structure of L-rhamnose isomerase from Lactobacillus rhamnosus
Classification: ISOMERASE
Source organism: Lacticaseibacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-13
Authors: Yoshida, H., Yoshihara, A.
PDB entry 8jq4: Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with L-rhamnose
Classification: ISOMERASE
Source organism: Lacticaseibacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-06-13
Authors: Yoshida, H., Yoshihara, A.
PDB entry 8jq5: Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with D-allulose
Classification: ISOMERASE
Source organism: Lacticaseibacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-06-13
Authors: Yoshida, H., Yoshihara, A.
PDB entry 8jq6: Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with D-allose
Classification: ISOMERASE
Source organism: Lacticaseibacillus rhamnosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-06-13
Authors: Yoshida, H., Yoshihara, A.
PDB entry 8jq9: Structure of Gabija GajA
Classification: IMMUNE SYSTEM
Source organism: Bacillus cereus (strain VD045)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-06-13
Authors: Li, J., Wang, Z., Wang, L.
PDB entry 8jqb: Structure of Gabija GajA-GajB 4:4 Complex
Classification: IMMUNE SYSTEM
Source organism: Bacillus cereus VD045
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-13
Authors: Li, J., Wang, Z., Wang, L.
PDB entry 8jqc: Structure of Gabija GajA-GajB 4:1 complex
Classification: IMMUNE SYSTEM
Source organism: Bacillus cereus (strain VD045)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-06-13
Authors: Li, J., Wang, Z., Wang, L.
PDB entry 8jqe: Structure of CmCBDA in complex with Mn2+ and glycerol
Classification: HYDROLASE
Source organism: Cyclobacterium marinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-06-14
Authors: Li, X.
PDB entry 8jqf: Structure of CmCBDA in complex with Ni2+ and Glycerol
Classification: HYDROLASE
Source organism: Cyclobacterium marinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-06-14
Authors: Li, X.
PDB entry 8jqg: Cryo EM map of full length PLC gamma 2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2023-06-14
Authors: Shin, Y.-C., Liao, M.
PDB entry 8jqh: Cryo EM map of full length PLC gamma 2 in autoinhibition state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-06-14
Authors: Shin, Y.-C., Liao, M.
PDB entry 8jqi: Cryo EM map of full length PLC gamma 2 and FGFR1 Kinase Domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-06-14
Authors: Shin, Y.-C., Liao, M.
PDB entry 8jqj: Crystal structure of carbonyl reductase SSCR mutant 1 from Sporobolomyces Salmonicolor
Classification: OXIDOREDUCTASE
Source organism: Sporobolomyces salmonicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-06-14
Authors: Zhang, H.L., Li, Q., Liu, W.D., Chen, X., Wu, Q.Q., Zhu, D.M.
PDB entry 8jqk: Crystal structure of a carbonyl reductase SSCR mutant from Sporobolomyces Salmonicolor
Classification: OXIDOREDUCTASE
Source organism: Sporobolomyces salmonicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-06-14
Authors: Zhang, H.L., Li, Q., Liu, W.D., Chen, X., Wu, Q.Q., Zhu, D.M.
PDB entry 8jqm: CryoEM structure of sNS1 complexed with Fab 4F10
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-06-14
Authors: Chen, Q., Qi, P.
PDB entry 8jqn: CryoEM structure of sNS1 complexed with Fab 2E11
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-06-14
Authors: Chen, Q., Qi, P.
PDB entry 8jqo: Protocatecuate hydroxylase from Xylophilus ampelinus complexed with imidazole
Classification: OXIDOREDUCTASE
Source organism: Xylophilus ampelinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-06-14
Authors: Fukushima, R., Katsuki, N., Fushinobu, S., Takaya, N.
PDB entry 8jqp: Protocatecuate hydroxylase from Xylophilus ampelinus complexed with 3,4-dihydroxybenzoate
Classification: OXIDOREDUCTASE
Source organism: Xylophilus ampelinus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-06-14
Authors: Fukushima, R., Katsuki, N., Fushinobu, S., Takaya, N.
PDB entry 8jqq: Protocatecuate hydroxylase from Xylophilus ampelinus C347T mutant
Classification: OXIDOREDUCTASE
Source organism: Xylophilus ampelinus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2023-06-14
Authors: Fukushima, R., Katsuki, N., Fushinobu, S., Takaya, N.
PDB entry 8jqr: Structure of human TRPV1 in complex with antagonist
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Pseudotevenvirus RB43
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-06-14
Authors: Fan, J., Lei, X.
PDB entry 8jqs: CryoEM structure of sNS1 complexed with Fab 14G5
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-06-14
Authors: Chen, Q., Pan, Q.
PDB entry 8jqt: Crystal structure of U03-GPAKGIEYD
Classification: IMMUNE SYSTEM
Source organism: Anas platyrhynchos; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-06-14
Authors: Tang, Z., Zhang, N.
PDB entry 8jqu: Crystal structure of GppNHp bound GTPase domain of Rab5a from Leishmania donovani
Classification: ENDOCYTOSIS
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 1.798 Å
Deposited: 2023-06-14
Authors: Pandey, D., Zohib, M., Pal, R.K., Biswal, B.K., Arora, A.
PDB entry 8jqv: Hen egg-white lysozyme solved from 1D fixed target delivery system
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-06-15
Authors: Kim, J., Park, S., Park, J.
PDB entry 8jqw: Crystal structure of V30I mutated human transthyretin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-06-15
Authors: Mizuguchi, M., Yamada, S., Obita, T.
PDB entry 8jqy: Crystal Structure of nucleotide-free mIRGB10
Classification: IMMUNE SYSTEM
Source organism: Mus musculus molossinus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.68 Å
Deposited: 2023-06-15
Authors: Ha, H.J., Park, H.H.
PDB entry 8jqz: Crystal Structure of GppNHp-bound mIRGB10
Classification: IMMUNE SYSTEM
Source organism: Mus musculus molossinus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-06-15
Authors: Ha, H.J., Park, H.H.
PDB entry 8jr0: Cryo-EM structure of Mycobacterium tuberculosis ATP synthase in complex with TBAJ-587
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-06-15
Authors: Zhang, Y., Lai, Y., Liu, F., Rao, Z., Gong, H.
PDB entry 8jr1: Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with TBAJ-587
Classification: MEMBRANE PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-06-15
Authors: Zhang, Y., Lai, Y., Liu, F., Rao, Z., Gong, H.
PDB entry 8jr3: Crystal structure of Hendra Virus attachment(G) glycoprotein mutant S586N in complex with neutralizing antibody 14F8
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Hendra virus (isolate Horse/Autralia/Hendra/1994); Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.22 Å
Deposited: 2023-06-16
Authors: Li, Y.H., Huang, X.Y., Xu, J.J., Chen, W.
PDB entry 8jr4: Molecular structure of bat MHC II at 2.4 A resolution
Classification: IMMUNE SYSTEM
Source organism: Eptesicus fuscus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-06-16
Authors: Wang, S.
PDB entry 8jr5: Crystal structure of Hendra Virus attachment(G) glycoprotein mutant S586N
Classification: VIRAL PROTEIN
Source organism: Hendra virus (isolate Horse/Autralia/Hendra/1994)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-06-16
Authors: Li, Y.H., Huang, X.Y., Xu, J.J., Chen, W.
PDB entry 8jr6: Hsp90a N-terminal domain
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-06-16
Authors: Wan, C.J.
PDB entry 8jr7: N-terminal domain of Hsp90 mutant
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-06-16
Authors: Wan, C.J.
PDB entry 8jr8: MapSPARTA dimer bound with guide-target
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Maribacter polysiphoniae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2023-06-16
Authors: Huang, P.P., Li, Z.X., Guo, L.J., Xiao, Y.B., Chen, M.R.
PDB entry 8jr9: Small molecule agonist (PCO371) bound to human parathyroid hormone receptor type 1 (PTH1R)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-06-16
Authors: Zhao, L., He, Q., Yuan, Q., Gu, Y., He, X., Shan, H., Li, J., Wang, K., Li, Y., Hu, W., Wu, K., Shen, J., Xu, H.E.
PDB entry 8jra: N-terminal domain of Hsp90a mutant
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-06-16
Authors: Wan, C.J.
PDB entry 8jrb: Structure of DNA polymerase 1 from Aquifex pyrophilus
Classification: REPLICATION
Source organism: Aquifex pyrophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-16
Authors: Clement, P., Nair, D.T.
PDB entry 8jrc: Crystal structure of the GAF domain of the transcriptional activator NifA
Classification: TRANSCRIPTION
Source organism: Rhodopseudomonas palustris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-06-16
Authors: Zeng, Y., Guo, L., Li, D.F.
PDB entry 8jrd: Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin and coenzyme A
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-06-16
Authors: Waki, T., Imaizumi, R., Nakata, S., Yanai, T., Takeshita, K., Sakai, N., Kataoka, K., Yamamoto, M., Nakayama, T., Yamashita, S.
PDB entry 8jre: Cryo-EM structure of a designed AAV8-based vector
Classification: VIRUS
Source organism: Adeno-associated virus - 8
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2023-06-16
Authors: Ke, X., Luo, S., Zheng, Q., Jiang, H., Liu, F., Sun, X.
PDB entry 8jri: Cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) without any bound substrate.
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-06-16
Authors: Hsu, S.T.D., Draczkowski, P., Wang, Y.S.
PDB entry 8jrj: Crystal structure of the bat MHC II molecule at 2.8 A resolution
Classification: IMMUNE SYSTEM
Source organism: Eptesicus fuscus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-06-17
Authors: Wang, S.
PDB entry 8jrk: Crystal structure of the bat MHC II molecule at 2.3 A resolution
Classification: IMMUNE SYSTEM
Source organism: Eptesicus fuscus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-06-17
Authors: Wang, S.
PDB entry 8jrl: Crystal structure of P450 TleB with an indole alkaloid
Classification: OXIDOREDUCTASE
Source organism: Streptomyces blastmyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2023-06-17
Authors: Wang, J., Yan, W.P.
PDB entry 8jrm: Solution structure of a 7_1 knotted Q9PR55
Classification: STRUCTURAL GENOMICS
Source organism: Ureaplasma parvum serovar 3 str. ATCC 700970
Experimental method: SOLUTION NMR
Deposited: 2023-06-17
Authors: Hsu, S.T.D., Lai, C.H.
PDB entry 8jrn: Structure of E6AP-E6 complex in Att1 state
Classification: LIGASE/ONCOPROTEIN
Source organism: Homo sapiens; Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-06-17
Authors: Wang, Z., Yu, X.
PDB entry 8jro: Structure of E6AP-E6 complex in Att2 state
Classification: LIGASE/ONCOPROTEIN
Source organism: Homo sapiens; Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-06-17
Authors: Wang, Z., Yu, X.
PDB entry 8jrp: Structure of E6AP-E6 complex in Att3 state
Classification: LIGASE/ONCOPROTEIN
Source organism: Homo sapiens; Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2023-06-17
Authors: Wang, Z., Yu, X.
PDB entry 8jrq: Structure of E6AP-E6 complex in Det1 state
Classification: LIGASE/ONCOPROTEIN
Source organism: Homo sapiens; Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.15 Å
Deposited: 2023-06-17
Authors: Wang, Z., Yu, X.
PDB entry 8jrr: Structure of E6AP-E6 complex in Det2 state
Classification: LIGASE/ONCOPROTEIN
Source organism: Homo sapiens; Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.35 Å
Deposited: 2023-06-17
Authors: Wang, Z., Yu, X.
PDB entry 8jrt: Cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) bound to K11/K48-branched ubiquitin (Ub) chain composed of three Ub.
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-17
Authors: Hsu, S.T.D., Draczkowski, P., Wang, Y.S.
PDB entry 8jru: Cryo-EM structure of the glucagon receptor bound to beta-arrestin 1 in ligand-free state
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Escherichia phage EcSzw-2; Homo sapiens; Influenza A virus (strain A/Victoria/3/1975 H3N2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-17
Authors: Chen, K., Zhang, C., Lin, S., Zhao, Q., Wu, B.
PDB entry 8jrv: Cryo-EM structure of the glucagon receptor bound to glucagon and beta-arrestin 1
Classification: MEMBRANE PROTEIN
Source organism: Escherichia phage EcSzw-2; Homo sapiens; Influenza A virus (strain A/Victoria/3/1975 H3N2); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-06-17
Authors: Chen, K., Zhang, C., Lin, S., Zhao, Q., Wu, B.
PDB entry 8js5: Dimeric PAS domains of oxygen sensor FixL with ferric unliganded heme
Classification: TRANSFERASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-06-19
Authors: Kamaya, M., Koteishi, H., Sawai, H., Sugimoto, H., Shiro, Y.
PDB entry 8js6: Dimeric PAS domains of oxygen sensor FixL in complex with cyanide-bound ferric heme
Classification: TRANSFERASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-06-19
Authors: Kamaya, M., Koteishi, H., Sawai, H., Sugimoto, H., Shiro, Y.
PDB entry 8js7: Dimeric PAS domains of oxygen sensor FixL in complex with imidazole-bound heme
Classification: TRANSFERASE
Source organism: Bradyrhizobium diazoefficiens USDA 110
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-06-19
Authors: Kamaya, M., Koteishi, H., Sawai, H., Sugimoto, H., Shiro, Y.
PDB entry 8js8: Cryo-EM structure of SV2A in complex with BoNT/A2 Hc and levetiracetam
Classification: TRANSPORT PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-06-19
Authors: Yamagata, A.
PDB entry 8js9: Cryo-EM structure of SV2A in complex with BoNT/A2 Hc
Classification: MEMBRANE PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-06-19
Authors: Yamagata, A.
PDB entry 8jsb: Antibody scFv against the Matrix protein 2 of influenza virus
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.03 Å
Deposited: 2023-06-19
Authors: Kumar, U., Gaur, V., Salunke, D.M.
PDB entry 8jsc: Structure of the FSP1 protein from Human
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2023-06-19
Authors: Zhang, S.T., Jia, D.
PDB entry 8jsd: Alginate lyase mutant-D180G
Classification: LYASE
Source organism: Flavobacterium sp. UMI-01
Experimental method: X-RAY DIFFRACTION
Resolution: 1.414 Å
Deposited: 2023-06-19
Authors: Zhang, X., Pan, L.X., Yang, D.F.
PDB entry 8jsf: Crystal structure of a cytidylate cyclase from multidrug-resistant bacterium Elizabethkingia anopheles
Classification: TRANSFERASE
Source organism: Elizabethkingia anophelis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-20
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8jsg: Structure of the 30S-IF3 complex from Escherichia coli
Classification: TRANSLATION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2023-06-20
Authors: Uday, A.B., Mishra, R.K., Hussain, T.
PDB entry 8jsh: Structure of the 30S-body-IF3 complex from Escherichia coli
Classification: TRANSLATION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-06-20
Authors: Uday, A.B., Mishra, R.K., Hussain, T.
PDB entry 8jsi: Cryo-EM structure of a DNA-protein complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Thermococcus thioreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-20
Authors: Li, Z.
PDB entry 8jsj: Crystal structure of an N-terminal cyclic nucleotide-binding domain of a PycTIR from Novosphingobium pentaromativorans
Classification: SIGNALING PROTEIN
Source organism: Novosphingobium pentaromativorans US6-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.858 Å
Deposited: 2023-06-20
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8jsk: Crystal structure of an N-terminal cyclic nucleotide-binding domain of a PycTIR from Pseudovibrio sp. in complex with cUMP
Classification: SIGNALING PROTEIN
Source organism: Pseudovibrio sp. W64
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2023-06-20
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8jsl: The structure of EBOV L-VP35-RNA complex
Classification: VIRAL PROTEIN/RNA
Source organism: Ebola virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-06-20
Authors: Qi, P., Yi, S.
PDB entry 8jsm: The structure of EBOV L-VP35-RNA complex (conformation 1)
Classification: VIRAL PROTEIN/RNA
Source organism: Ebola virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-06-20
Authors: Qi, P., Yi, S.
PDB entry 8jsn: The structure of EBOV L-VP35-RNA complex (conformation 2)
Classification: VIRAL PROTEIN/RNA
Source organism: Ebola virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-06-20
Authors: Qi, P., Yi, S.
PDB entry 8jso: AMPH-bound hTAAR1-Gs protein complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-06-20
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jsp: Ulotaront(SEP-363856)-bound Serotonin 1A (5-HT1A) receptor-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2023-06-20
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jsr: Cryo-EM structure of the anamorelin-bound ghrelin receptor and Gq complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-20
Authors: Im, D., Shiimura, Y., Asada, H., Iwata, S.
PDB entry 8jst: GH11 family xylanase rMxylcd from the compost-soil metagenome
Classification: HYDROLASE
Source organism: compost metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-06-20
Authors: Wu, S.N., Zhang, N.Y., Wan, Q.
PDB entry 8jsu: The crystal structure of TvaE in complex with TvaLP
Classification: LYASE
Source organism: Streptomyces sp. NRRL S-87
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2023-06-20
Authors: Li, M., Pan, L.F.
PDB entry 8jsv: Dihydrofolate reductase-like enzyme from Leptospira interrogans (selenomethionine derivative)
Classification: OXIDOREDUCTASE
Source organism: Leptospira interrogans serovar Pomona
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-06-20
Authors: Chandit, C., Wangkanont, K.
PDB entry 8jsw: Human VMAT2 complex with serotonin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-06-20
Authors: Jiang, D.H., Wu, D.
PDB entry 8jsx: VMAT2 complex with noradrenaline in lumen-facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-06-20
Authors: Jiang, D.H., Wu, D.
PDB entry 8jsy: Dihydrofolate reductase-like enzyme from Leptospira interrogans
Classification: OXIDOREDUCTASE
Source organism: Leptospira interrogans serovar Pomona
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2023-06-20
Authors: Wangkanont, K.
PDB entry 8jsz: Crystal structure of a uridylate cyclase from Anabaena sp.
Classification: TRANSFERASE
Source organism: Anabaena sp. CA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-06-20
Authors: Wang, Y.-C., Yang, C.-S., Hou, M.-H., Chen, Y.
PDB entry 8jt0: Dihydrofolate reductase-like enzyme from Leptospira interrogans with additional NADP+
Classification: OXIDOREDUCTASE
Source organism: Leptospira interrogans serovar Pomona
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-20
Authors: Wangkanont, K.
PDB entry 8jt1: COLLAGENASE FROM GRIMONTIA (VIBRIO) HOLLISAE 1706B COMPLEXED WITH GLY-PRO-HYP-GLY-PRO-HYP
Classification: HYDROLASE
Source organism: Grimontia hollisae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-21
Authors: Ueshima, S., Yaskawa, K., Takita, T., Mikami, B.
PDB entry 8jt3: Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with amino donor L-Arg
Classification: TRANSFERASE
Source organism: Actinoalloteichus sp. 2216-6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-06-21
Authors: Su, K., Zhang, Y., Xu, J., Liu, J.
PDB entry 8jt4: Substrate -binding mode guided protein design of alginate lyase FlAlyA for altered end-product distribution
Classification: LYASE
Source organism: Flavobacterium sp. UMI-01
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-06-21
Authors: Zhang, X., Yang, D.F.
PDB entry 8jt5: VMAT2 complex with histamine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-06-21
Authors: Jiang, D.H., Wu, D.
PDB entry 8jt6: 5-HT1A-Gi in complex with compound (R)-IHCH-7179
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-21
Authors: Chen, Z., Xu, P., Huang, S., Xu, H.E., Wang, S.
PDB entry 8jt7: Structure of arginine oxidase from Pseudomonas sp. TRU 7192
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.34 Å
Deposited: 2023-06-21
Authors: Yamaguchi, H., Numoto, N., Suzuki, H., Nishikawa, K., Kamegawa, A., Takahashi, K., Sugiki, M., Fujiyoshi, Y.
PDB entry 8jt8: Crystal structure of 5-HT2AR in complex with (R)-IHCH-7179
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-06-21
Authors: Chen, Z., Fan, L., Wang, S.
PDB entry 8jt9: Human VMAT2 complex with ketanserin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-06-21
Authors: Jiang, D.H., Wu, D.
PDB entry 8jta: Human VMAT2 complex with tetrabenazine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-06-21
Authors: Jiang, D.H., Wu, D.
PDB entry 8jtb: VMAT2 complex with dopamine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-06-21
Authors: Jiang, D.H., Wu, D.
PDB entry 8jtc: Human VMAT2 complex with reserpine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-06-21
Authors: Jiang, D.H., Wu, D.
PDB entry 8jtd: BJOX2000.664 trimer in complex with Fab fragment of broadly neutralizing HIV antibody PGT145
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2023-06-21
Authors: Chatterjee, A., Chen, C., Lee, K., Mangala Prasad, V.
PDB entry 8jti: Cryo-EM structure of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub.
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-06-21
Authors: Hsu, S.T.D., Draczkowski, P., Wang, Y.S.
PDB entry 8jtj: Cryo-EM structure of GeoCas9-sgRNA-dsDNA ternary complex
Classification: DNA BINDING PROTEIN/RNA/DNA
Source organism: Geobacillus stearothermophilus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2023-06-21
Authors: Shen, P.P., Liu, B.B., Li, X., Zhang, L.L., Chen, C.-C., Guo, R.-T.
PDB entry 8jtk: Structure of AYWB phytoplasma SAP05 recognizing AtRpn10
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana; Aster yellows witches'-broom phytoplasma (strain AYWB)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-06-22
Authors: Du, Y.X., Zhang, L.Y., Zheng, Q.Y.
PDB entry 8jtl: Structure of OY phytoplasma SAP05 binding with AtRpn10
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana; Onion yellows phytoplasma (strain OY-M)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2023-06-22
Authors: Du, Y.X., Zhang, L.Y., Zheng, Q.Y.
PDB entry 8jtm: CNE55.664 trimer in complex with broadly neutralizing HIV antibody PGT145
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.14 Å
Deposited: 2023-06-22
Authors: Chatterjee, A., Chen, C., Lee, K., Mangala Prasad, V.
PDB entry 8jtn: Tudor domain of TDRD3 in complex with a small molecule
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-06-22
Authors: Chen, M., Wang, Z., Li, W., Shang, X., Liu, Y.
PDB entry 8jto: Outer membrane porin of Burkholderia pseudomallei (BpsOmp38) in complex with ceftazidime
Classification: PROTEIN TRANSPORT
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-06-22
Authors: Bunkum, P., Aunkham, A., Bert van den, B., Robinson, R.C., Suginta, W.
PDB entry 8jtp: Crystal structure of apo Enoyl-Acyl Carrier Protein Reductase (FabI) from Klebsiella pneumoniae
Classification: OXIDOREDUCTASE
Source organism: Klebsiella pneumoniae subsp. pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-06-22
Authors: Biswas, S., Kushwaha, G.S., Suar, M.
PDB entry 8jtr: Cryo-EM structure of GeoCas9-sgRNA binary complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Geobacillus stearothermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-06-22
Authors: Shen, P.P., Liu, B.B., Li, X., Zhang, L.L., Chen, C.-C., Guo, R.-T.
PDB entry 8jts: hOCT1 in complex with metformin in outward open conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2023-06-22
Authors: Zhang, S., Zhu, A., Kong, F., Chen, J., Lan, B., He, G., Gao, K., Cheng, L., Yan, C., Chen, L., Liu, X.
PDB entry 8jtt: hOCT1 in complex with metformin in outward occluded conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2023-06-22
Authors: Zhang, S., Zhu, A., Kong, F., Chen, J., Lan, B., He, G., Gao, K., Cheng, L., Yan, C., Chen, L., Liu, X.
PDB entry 8jtu: Connectase T1A mutant from Methanocaldococcus mazei
Classification: LIGASE
Source organism: Methanosarcina mazei
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2023-06-22
Authors: Chong, H.C., Wu, B.
PDB entry 8jtv: hOCT1 in complex with metformin in inward occluded conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2023-06-22
Authors: Zhang, S., Zhu, A., Kong, F., Chen, J., Lan, B., He, G., Gao, K., Cheng, L., Yan, C., Chen, L., Liu, X.
PDB entry 8jtw: hOCT1 in complex with nb5660 in inward facing partially open 1 conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-06-22
Authors: Zhang, S., Zhu, A., Kong, F., Chen, J., Lan, B., He, G., Gao, K., Cheng, L., Yan, C., Chen, L., Liu, X.
PDB entry 8jtx: hOCT1 in complex with nb5660 in inward facing fully open conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2023-06-22
Authors: Zhang, S., Zhu, A., Kong, F., Chen, J., Lan, B., He, G., Gao, K., Cheng, L., Yan, C., Chen, L., Liu, X.
PDB entry 8jty: hOCT1 in complex with nb5660 in inward facing partially open 2 conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-06-22
Authors: Zhang, S., Zhu, A., Kong, F., Chen, J., Lan, B., He, G., Gao, K., Cheng, L., Yan, C., Chen, L., Liu, X.
PDB entry 8jtz: hOCT1 in complex with spironolactone in outward facing partially occluded conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-06-22
Authors: Zhang, S., Zhu, A., Kong, F., Chen, J., Lan, B., He, G., Gao, K., Cheng, L., Yan, C., Chen, L., Liu, X.
PDB entry 8ju0: hOCT1 in complex with spironolactone in inward facing occluded conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-06-23
Authors: Zhang, S., Zhu, A., Kong, F., Chen, J., Lan, B., He, G., Gao, K., Cheng, L., Yan, C., Chen, L., Liu, X.
PDB entry 8ju3: Mu phage tail fiber
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Mu
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-24
Authors: Yamashita, E., Takeda, S.
PDB entry 8ju4: Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 1,4-androstadiene-3,17- dione
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus electrodiphilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-06-24
Authors: Hu, Y.L., Li, X., Cheng, X.Y., Song, S.K., Su, Z.D.
PDB entry 8ju5: Structure of human TRPV4 with antagonist A1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2023-06-24
Authors: Fan, J., Lei, X.
PDB entry 8ju6: Structure of human TRPV4 with antagonist GSK279
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2023-06-24
Authors: Fan, J., Lei, X.
PDB entry 8ju7: Structure of Pseudomonas aeruginosa ParS sensor domain
Classification: SIGNALING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-06-25
Authors: Zhao, N., Zhu, Z., Song, Y., Bao, R.
PDB entry 8ju8: de novo designed protein
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-06-25
Authors: Zhang, L.
PDB entry 8ju9: Molecular mechanism of the one-component regulator RccR on bacterial metabolism and virulence
Classification: DNA BINDING PROTEIN
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-25
Authors: Rui, B., Yibo, Z.
PDB entry 8jua: Multifunctional cytochrome P450 enzyme IkaD from Streptomyces sp. ZJ306, in complex with epoxyikarugamycin
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. ZJ306
Experimental method: X-RAY DIFFRACTION
Resolution: 2.00001 Å
Deposited: 2023-06-26
Authors: Zhang, Y.L., Zhang, L.P., Zhang, C.S.
PDB entry 8jub: Crystal structure of glutaminase C in complex with compound 27
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-06-26
Authors: Wang, X., Hanyu, S., Tingting, D.
PDB entry 8juc: Identification of small-molecule binding sites of a ubiquitin-conjugating enzyme-UBE2T through fragment-based screening
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-06-26
Authors: Anantharajan, J., Baburajendran, N.
PDB entry 8jud: Crystal structure of human MMP-7 in complex with inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-06-26
Authors: Kamitani, M., Abe-Sato, K., Oka, Y.
PDB entry 8jue: Crystal structure of glutaminase C in complex with compound 11
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-06-26
Authors: Wang, X., Hanyu, S., Tingting, D.
PDB entry 8juf: Crystal structure of human MMP-7 in complex with inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2023-06-26
Authors: Kamitani, M., Abe-Sato, K., Oka, Y.
PDB entry 8jug: Crystal structure of human MMP-7 in complex with inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-06-26
Authors: Kamitani, M., Abe-Sato, K., Oka, Y.
PDB entry 8juh: Crystal structure of ScFv against the receptor binding domine of SARS-CoV-2 S-spike protein
Classification: IMMUNE SYSTEM
Source organism: Ovis aries
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-06-26
Authors: Ma, Q.Q., Su, Z.D.
PDB entry 8jui: Crystal structures of Cystathionine beta lyase from Bacillus cereus ATCC 14579
Classification: LYASE
Source organism: Bacillus cereus ATCC 14579
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-26
Authors: Yu, H., Kim, K.-J.
PDB entry 8juj: Crystal structures of Cystathionine beta lyase from Bacillus cereus ATCC 14579
Classification: LYASE
Source organism: Bacillus cereus ATCC 14579
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-06-26
Authors: Yu, H., Kim, K.-J.
PDB entry 8jul: Cryo-EM structure of SIDT1 in complex with phosphatidic acid
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-06-26
Authors: Sun, C.R., Xu, D., Li, Q., Zhou, C.Z., Chen, Y.
PDB entry 8jun: Cryo-EM structure of SIDT1 E555Q mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2023-06-26
Authors: Sun, C.R., Xu, D., Li, Q., Zhou, C.Z., Chen, Y.
PDB entry 8juo: Crystal structure of aspartate semialdehyde dehydrogenase from Porphyromonas gingivalis
Classification: OXIDOREDUCTASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-06-27
Authors: Hwang, J., Do, H., Lee, J.H.
PDB entry 8jup: Crystal structure of a receptor like kinase from rice
Classification: TRANSFERASE
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-06-27
Authors: Ming, Z., Zhao, Q.
PDB entry 8juq: Crystal structure of Chitoporin from Vibrio harveyi in complex with gentamicin c1a
Classification: MEMBRANE PROTEIN
Source organism: Vibrio harveyi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-06-27
Authors: Sanram, S., Suginta, W., Robinson, R.
PDB entry 8jur: Crystal structure of Chitoporin from Vibrio harveyi in complex with gentamicin c1a (multiple binding sites)
Classification: MEMBRANE PROTEIN
Source organism: Vibrio harveyi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2023-06-27
Authors: Sanram, S., Suginta, W., Robinson, R.
PDB entry 8jus: Crystal structure of aspartate semialdehyde dehydrogenase from Porphyromonas gingivalis complexed with 2',5'adenosine diphosphate
Classification: OXIDOREDUCTASE
Source organism: Porphyromonas gingivalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-06-27
Authors: Hwang, J., Do, H., Lee, J.H.
PDB entry 8jut: rat megalin RAP complex
Classification: ENDOCYTOSIS
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-06-27
Authors: Goto, S., Tsutsumi, A., Lee, Y., Hosojima, M., Kabasawa, H., Komochi, K., Yun-san, L., Nagatoshi, S., Tsumoto, K., Nishizawa, T., Kikkawa, M., Saito, A.
PDB entry 8juu: rat megalin
Classification: ENDOCYTOSIS
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-06-27
Authors: Goto, S., Tsutsumi, A., Lee, Y., Hosojima, M., Kabasawa, H., Komochi, K., Yun-san, L., Nagatoshi, S., Tsumoto, K., Nishizawa, T., Kikkawa, M., Saito, A.
PDB entry 8juv: Crystal structure of a receptor like kinase with ADP
Classification: TRANSFERASE
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-06-27
Authors: Ming, Z., Zhao, Q.
PDB entry 8juw: Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2023-06-27
Authors: Cho, C., Song, J.
PDB entry 8jux: Crystal structure of SARS-CoV-2 Papain-like protease complexed with noncovalent inhibitor SR-01
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-06-27
Authors: Hsieh, Y.-J., Wu, K.-P.
PDB entry 8juy: Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class II)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.34 Å
Deposited: 2023-06-27
Authors: Cho, C., Song, J.
PDB entry 8juz: Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class III)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.29 Å
Deposited: 2023-06-27
Authors: Cho, C., Song, J.
PDB entry 8jv0: Crystal structure of the SLA-2*1001 allele and ASFV antigenic peptide at 2.2A resolution
Classification: IMMUNE SYSTEM
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-27
Authors: Wang, S.
PDB entry 8jv1: Structure of the SAR11 PotD in complex with GABA
Classification: TRANSPORT PROTEIN
Source organism: Pelagibacter sp. (strain HTCC7211)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.309 Å
Deposited: 2023-06-27
Authors: Ma, Q., Liu, C.
PDB entry 8jv2: Structure of the SAR11 PotD in complex with proline
Classification: TRANSPORT PROTEIN
Source organism: Pelagibacter sp. (strain HTCC7211)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2023-06-27
Authors: Ma, Q., Liu, C.
PDB entry 8jv3: Structure of the SAR11 PotD in complex with glycine betaine
Classification: TRANSPORT PROTEIN
Source organism: Pelagibacter sp. (strain HTCC7211)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2023-06-27
Authors: Ma, Q., Liu, C.
PDB entry 8jv4: Structure of the SAR11 PotD in complex with DMSP
Classification: TRANSPORT PROTEIN
Source organism: Pelagibacter sp. (strain HTCC7211)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.445 Å
Deposited: 2023-06-27
Authors: Ma, Q., Liu, C.
PDB entry 8jv5: Cryo-EM structure of the zebrafish P2X4 receptor in complex with BX430
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-06-27
Authors: Hattori, M., Shen, C.
PDB entry 8jv6: Cryo-EM structure of the zebrafish P2X4 receptor in complex with BAY-1797
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2023-06-27
Authors: Hattori, M., Shen, C.
PDB entry 8jv7: Cryo-EM structure of the panda P2X7 receptor in complex with PPADS
Classification: TRANSPORT PROTEIN
Source organism: Ailuropoda melanoleuca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-27
Authors: Sheng, D., Hattori, M.
PDB entry 8jv8: Cryo-EM structure of the panda P2X7 receptor in complex with PPNDS
Classification: TRANSPORT PROTEIN
Source organism: Ailuropoda melanoleuca
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2023-06-27
Authors: Sheng, D., Hattori, M.
PDB entry 8jva: Cryo-EM structure of the N-terminal domain of Omicron BA.1 in complex with nanobody N235 and S2L20 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-06-28
Authors: Liu, B., Liu, H.H., Han, P., Qi, J.X.
PDB entry 8jvb: Cryo-EM structure of the Type II secretion system protein from Acidithiobacillus caldus
Classification: TOXIN
Source organism: Acidithiobacillus caldus (strain SM-1)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2023-06-28
Authors: Liu, R.H., Zhang, K., Feng, Q.S., Dai, X., Fu, Y., Li, Y.
PDB entry 8jvc: Crystal structure of dephospho-coenzyme A kinase
Classification: TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-06-28
Authors: Kita, A., Ishida, Y., Shimosaka, T., Michimori, Y., Makarova, K., Koonin, E., Atomi, H., Miki, K.
PDB entry 8jvd: Identification of small-molecule binding sites of a ubiquitin-conjugating enzyme-UBE2T through fragment-based screening
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.696 Å
Deposited: 2023-06-28
Authors: Anantharajan, J., Baburajendran, N.
PDB entry 8jve: Identification and characterization of inhibitors covalently modifying catalytic cysteine of UBE2T and blocking ubiquitin transfer
Classification: LIGASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-06-28
Authors: Anantharajan, J., Baburajendran, N.
PDB entry 8jvf: Crystal structure of dephospho-coenzyme A kinase
Classification: TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-06-28
Authors: Kita, A., Ishida, Y., Shimosaka, T., Michimori, Y., Makarova, K., Koonin, E., Atomi, H., Miki, K.
PDB entry 8jvg: Crystal structure of dephospho-coenzyme A kinase
Classification: TRANSFERASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-06-28
Authors: Kita, A., Ishida, Y., Shimosaka, T., Michimori, Y., Makarova, K., Koonin, E., Atomi, H., Miki, K.