LiteFold/PDB huggingface dataset:
PDB entry 3a34: Effect of Ariginine on lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2009-06-09
Authors: Ito, L., Shiraki, K., Matsuura, T., Yamaguchi, H.
PDB entry 3a35: Crystal structure of LumP complexed with riboflavin
Classification: LUMINESCENT PROTEIN
Source organism: Photobacterium kishitanii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.421 Å
Deposited: 2009-06-09
Authors: Sato, Y.
PDB entry 3a36: Structural insight into the membrane insertion of tail-anchored proteins by Get3
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-06-10
Authors: Yamagata, A., Mimura, H., Sato, Y., Yamashita, M., Yoshikawa, A., Fukai, S.
PDB entry 3a37: Structural insight into the membrane insertion of tail-anchored proteins by Get3
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2009-06-10
Authors: Yamagata, A., Mimura, H., Sato, Y., Yamashita, M., Yoshikawa, A., Fukai, S.
PDB entry 3a38: Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution
Classification: ELECTRON TRANSPORT
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 0.7 Å
Deposited: 2009-06-10
Authors: Takeda, K., Kusumoto, K., Hirano, Y., Miki, K.
PDB entry 3a39: Crystal Structure of High-Potential Iron-Sulfur Protein from Thermochromatium tepidum at 0.72 angstrom resolution
Classification: ELECTRON TRANSPORT
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 0.72 Å
Deposited: 2009-06-11
Authors: Takeda, K., Kusumoto, K., Hirano, Y., Miki, K.
PDB entry 3a3a: Crystal structure of human selenocystine tRNA
Classification: RNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-06-11
Authors: Itoh, Y., Chiba, S., Sekine, S.I., Yokoyama, S.
PDB entry 3a3b: Crystal structure of LumP complexed with flavin mononucleotide
Classification: LUMINESCENT PROTEIN
Source organism: Photobacterium kishitanii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-06-11
Authors: Sato, Y.
PDB entry 3a3c: Crystal structure of TIM40/MIA40 fusing MBP, C296S and C298S mutant
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli (strain K12); Saccharomyces cerevisiae (strain ATCC 204508 / S288c); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-06-11
Authors: Kawano, S., Naoe, M., Momose, T., Watanabe, N., Endo, T.
PDB entry 3a3d: Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae
Classification: HYDROLASE
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-06-12
Authors: Kawai, F., Roper, D.I., Park, S.-Y., Tame, J.R.H.
PDB entry 3a3e: Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae, complexed with novel beta-lactam (CMV)
Classification: HYDROLASE
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-06-12
Authors: Kawai, F., Roper, D.I., Park, S.-Y., Tame, J.R.H.
PDB entry 3a3f: Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae,complexed with novel beta-lactam (FMZ)
Classification: HYDROLASE
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-06-12
Authors: Kawai, F., Roper, D.I., Park, S.-Y., Tame, J.R.H.
PDB entry 3a3g: Crystal structure of LumP complexed with 6,7-dimethyl-8-(1'-D-ribityl) lumazine
Classification: LUMINESCENT PROTEIN
Source organism: Photobacterium kishitanii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-06-12
Authors: Sato, Y.
PDB entry 3a3h: CELLOTRIOSE COMPLEX OF THE ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHERANS AT 1.6 A RESOLUTION
Classification: HYDROLASE
Source organism: Bacillus agaradhaerens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 1998-02-01
Authors: Davies, G.J., Brzozowski, A.M., Andersen, K., Schulein, M.
PDB entry 3a3i: Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae, complexed with ampicillin (AIX)
Classification: HYDROLASE/ANTIBIOTIC
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-06-12
Authors: Kawai, F., Roper, D.I., Park, S.-Y., Tame, J.R.H.
PDB entry 3a3j: Crystal structures of penicillin binding protein 5 from Haemophilus influenzae
Classification: HYDROLASE
Source organism: Haemophilus influenzae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2009-06-12
Authors: Kawai, F., Roper, D.I., Park, S.-Y., Tame, J.R.H.
PDB entry 3a3k: Reversibly bound chloride in the atrial natriuretic peptide receptor hormone-binding domain
Classification: LYASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-06-14
Authors: Ogawa, H., Qiu, Y., Ogata, C.M., Misono, K.S.
PDB entry 3a3n: Crystal structure of complex between SA-subtilisin and Tk-propeptide with deletion of the two C-terminal residues
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-06-15
Authors: Tanaka, S., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3a3o: Crystal structure of complex between SA-subtilisin and Tk-propeptide with deletion of the five C-terminal residues
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-06-15
Authors: Tanaka, S., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3a3p: Crystal structure of complex between E201A/SA-subtilisin and Tk-propeptide
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-06-15
Authors: Tanaka, S., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3a3q: Structure of N59D HEN EGG-WHITE LYSOZYME in complex with (GlcNAc)3
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-06-16
Authors: Ose, T., Kuroki, K., Matsushima, M., Maenaka, K., Kumagai, I.
PDB entry 3a3r: Structure of N59D HEN EGG-WHITE LYSOZYME
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-06-16
Authors: Ose, T., Kuroki, K., Matsushima, M., Maenaka, K., Kumagai, I.
PDB entry 3a3t: The oxidoreductase NmDsbA1 from N. meningitidis
Classification: OXIDOREDUCTASE
Source organism: Neisseria meningitidis serogroup B
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2009-06-19
Authors: Vivian, J.P., Scoullar, J., Bushell, S., Beddoe, T., Wilce, M.C.J., Byres, E., Boyle, T.P., Rimmer, K., Doak, B., Simpson, J.S., Graham, B., Heras, B., Kahler, C.M., Rossjohn, J., Scanlon, M.J.
PDB entry 3a3u: Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2009-06-20
Authors: Arai, R., Nishino, A., Nagano, K., Uchikubo-Kamo, T., Katsura, K., Nishimoto, M., Toyama, M., Terada, T., Kuramitsu, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3a3v: Crystal structure of reducing-end-xylose releasing exo-oligoxylanase Y198F mutant
Classification: HYDROLASE
Source organism: Bacillus halodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2009-06-22
Authors: Hidaka, M., Fushinobu, S., Honda, Y., Kitaoka, M.
PDB entry 3a3w: Structure of OpdA mutant (G60A/A80V/S92A/R118Q/K185R/Q206P/D208G/I260T/G273S) with diethyl 4-methoxyphenyl phosphate bound in the active site
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-06-23
Authors: Ollis, D.L., Tawfik, D.S., Schenk, G., Jackson, C.J., Foo, J.L., Tokuriki, N., Afriat, L., Carr, P.D., Kim, H.K.
PDB entry 3a3x: Structure of OpdA mutant (G60A/A80V/R118Q/K185R/Q206P/D208G/I260T/G273S)
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-06-23
Authors: Ollis, D.L., Tawfik, D.S., Schenk, G., Jackson, C.J., Foo, J.L., Tokuriki, N., Afriat, L., Carr, P.D., Kim, H.K.
PDB entry 3a3y: Crystal structure of the sodium-potassium pump with bound potassium and ouabain
Classification: HYDROLASE/TRANSPORT PROTEIN
Source organism: Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-06-23
Authors: Ogawa, H., Shinoda, T., Cornelius, F., Toyoshima, C.
PDB entry 3a3z: Crystal structure of the human VDR ligand binding domain bound to the synthetic agonist compound 2alpha-methyl-AMCR277A(C23S)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2009-06-25
Authors: Sato, Y., Antony, P., Huet, T., Sigueiro, R., Rochel, N., Moras, D., Structural Proteomics in Europe 2 (SPINE-2)
PDB entry 3a40: Crystal structure of the human VDR ligand binding domain bound to the synthetic agonist compound 2alpha-methyl-AMCR277B(C23R)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2009-06-25
Authors: Sato, Y., Antony, P., Huet, T., Sigueiro, R., Rochel, N., Moras, D., Structural Proteomics in Europe 2 (SPINE-2)
PDB entry 3a42: Crystal structure of MvNei1
Classification: HYDROLASE
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-06-30
Authors: Imamura, K., Wallace, S., Doublie, S.
PDB entry 3a43: Crystal structure of HypA
Classification: METAL BINDING PROTEIN
Source organism: Pyrococcus kodakaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-06-30
Authors: Watanabe, S., Arai, T., Matsumi, R., Aromi, H., Imanaka, T., Miki, K.
PDB entry 3a44: Crystal structure of HypA in the dimeric form
Classification: METAL BINDING PROTEIN
Source organism: Pyrococcus kodakaraensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2009-06-30
Authors: Watanabe, S., Arai, T., Matsumi, R., Atomi, H., Imanaka, T., Miki, K.
PDB entry 3a45: Crystal structure of MvNei1_2
Classification: HYDROLASE
Source organism: Acanthamoeba polyphaga mimivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-06-30
Authors: Imamura, K., Wallace, S., Doublie, S.
PDB entry 3a46: Crystal structure of MvNei1/THF complex
Classification: HYDROLASE
Source organism: Acanthamoeba polyphaga mimivirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-07-01
Authors: Imamura, K., Wallace, S., Doublie, S.
PDB entry 3a47: Crystal structure of isomaltase from Saccharomyces cerevisiae
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2009-07-01
Authors: Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
PDB entry 3a4a: Crystal structure of isomaltase from Saccharomyces cerevisiae
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-07-01
Authors: Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
PDB entry 3a4c: Crystal structure of cdt1 C terminal domain
Classification: Cell cycle, Replication
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.889 Å
Deposited: 2009-07-06
Authors: Cho, Y., Lee, J.H.
PDB entry 3a4d: Crystal structure of Human Transthyretin (wild-type)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-07-06
Authors: Miyata, M.
PDB entry 3a4e: Crystal structure of Human Transthyretin (E54G)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-07-06
Authors: Miyata, M., Sato, T., Nakamura, T., Ikemizu, S., Yamagata, Y., Kai, H.
PDB entry 3a4f: Crystal Structure of Human Transthyretin (E54K)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2009-07-06
Authors: Miyata, M., Sato, T., Nakamura, T., Ikemizu, S., Yamagata, Y., Kai, H.
PDB entry 3a4g: Structure of cytochrome P450 vdh from Pseudonocardia autotrophica (trigonal crystal form)
Classification: OXIDOREDUCTASE
Source organism: Pseudonocardia autotrophica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-07-07
Authors: Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
PDB entry 3a4h: Structure of cytochrome P450 vdh from Pseudonocardia autotrophica (orthorhombic crystal form)
Classification: OXIDOREDUCTASE
Source organism: Pseudonocardia autotrophica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2009-07-07
Authors: Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
PDB entry 3a4i: Crystal structure of GMP synthetase PH1347 from Pyrococcus horikoshii OT3
Classification: LIGASE
Source organism: Pyrococcus horikoshii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2009-07-07
Authors: Maruoka, S., Horita, S., Lee, W.C., Nagata, K., Tanokura, M.
PDB entry 3a4j: arPTE (K185R/D208G/N265D/T274N)
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2009-07-07
Authors: Foo, J.L., Jackson, C.J., Carr, P.D., Ollis, D.L.
PDB entry 3a4k: Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA and divalent cations at 2.17 angstrom resolution
Classification: HYDROLASE/DNA
Source organism: Haemophilus influenzae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2009-07-09
Authors: Watanabe, N., Sato, C., Takasaki, Y., Tanaka, I.
PDB entry 3a4l: Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-07-10
Authors: Araiso, Y., Ishitani, R., Soll, D., Nureki, O.
PDB entry 3a4m: Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.792 Å
Deposited: 2009-07-10
Authors: Araiso, Y., Ishitani, R., Soll, D., Nureki, O.
PDB entry 3a4n: Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-07-10
Authors: Araiso, Y., Ishitani, R., Soll, D., Nureki, O.
PDB entry 3a4o: Lyn kinase domain
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2009-07-11
Authors: Miyano, N., Kinoshita, T., Tada, T.
PDB entry 3a4p: human c-MET kinase domain complexed with 6-benzyloxyquinoline inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2009-07-13
Authors: Fukami, T.A., Kadono, S., Yamamuro, M., Matsuura, T.
PDB entry 3a4r: The crystal structure of SUMO-like domain 2 in Nip45
Classification: TRANSCRIPTION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2009-07-14
Authors: Sekiyama, N., Arita, K., Ikeda, Y., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
PDB entry 3a4s: The crystal structure of the SLD2:Ubc9 complex
Classification: LIGASE/TRNASCRIPTION
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-07-14
Authors: Sekiyama, N., Arita, K., Ikeda, Y., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
PDB entry 3a4t: Crystal structure of aTrm4 from M.jannaschii with sinefungin
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2009-07-14
Authors: Hirano, M., Kuratani, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3a4u: Crystal structure of MCFD2 in complex with carbohydrate recognition domain of ERGIC-53
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2009-07-17
Authors: Nishio, M., Kamiya, Y., Mizushima, T., Wakatsuki, S., Sasakawa, H., Yamamoto, K., Uchiyama, S., Noda, M., McKay, A.R., Fukui, K., Hauri, H.P., Kato, K.
PDB entry 3a4v: Crystal structure of pyruvate bound L-Threonine dehydrogenase from Hyperthermophilic Archaeon Thermoplasma volcanium
Classification: OXIDOREDUCTASE
Source organism: Thermoplasma volcanium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2009-07-20
Authors: Yoneda, K., Sakuraba, H., Ohshima, T.
PDB entry 3a4w: Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-07-22
Authors: Tsuji, H., Nishimura, S., Inui, T., Ishikawa, K., Nakamura, T., Uegaki, K.
PDB entry 3a4x: Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2009-07-22
Authors: Tsuji, H., Nishimura, S., Inui, T., Ishikawa, K., Nakamura, T., Uegaki, K.
PDB entry 3a4y: Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-07-22
Authors: Ishikawa, H., Nakagawa, N., Kuramitsu, S., Yokoyama, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3a4z: Structure of cytochrome P450 Vdh mutant (Vdh-K1) obtained by directed evolution
Classification: OXIDOREDUCTASE
Source organism: Pseudonocardia autotrophica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-07-24
Authors: Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
PDB entry 3a50: Structure of cytochrome P450 Vdh mutant (Vdh-K1) obtained by directed evolution with bound vitamin D3
Classification: OXIDOREDUCTASE
Source organism: Pseudonocardia autotrophica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-07-24
Authors: Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
PDB entry 3a51: Structure of cytochrome P450 Vdh mutant (Vdh-K1) obtained by directed evolution with bound 25-hydroxyvitamin D3
Classification: OXIDOREDUCTASE
Source organism: Pseudonocardia autotrophica
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-07-24
Authors: Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
PDB entry 3a52: Crystal structure of cold-active alkailne phosphatase from psychrophile Shewanella sp.
Classification: HYDROLASE
Source organism: Shewanella
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-07-24
Authors: Tsuruta, H., Mikami, B., Higashi, T., Aizono, Y.
PDB entry 3a54: Crystal structure of the A47Q1 mutant of pro-protein-glutaminase
Classification: HYDROLASE
Source organism: Chryseobacterium proteolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.502 Å
Deposited: 2009-07-30
Authors: Hashizume, R., Yamaguchi, S., Mikami, B.
PDB entry 3a55: Crystal structure of the A47Q2 mutant of pro- protein-glutaminase
Classification: HYDROLASE
Source organism: Chryseobacterium proteolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-07-30
Authors: Hashizume, R., Yamaguchi, S., Mikami, B.
PDB entry 3a56: Crystal structure of pro- protein-glutaminase
Classification: HYDROLASE
Source organism: Chryseobacterium proteolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.728 Å
Deposited: 2009-07-31
Authors: Hashizume, R., Yamaguchi, S., Mikami, B.
PDB entry 3a57: Crystal structure of Thermostable Direct Hemolysin
Classification: TOXIN
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-08-03
Authors: Hashimoto, H., Yanagihara, I., Nakahira, K., Hamada, D., Ikegami, T., Mayanagi, K., Kaieda, S., Fukui, T., Ohnishi, K., Kajiyama, S., Yamane, T., Ikeguchi, M., Honda, T., Shimizu, T., Sato, M.
PDB entry 3a58: Crystal structure of Sec3p - Rho1p complex from Saccharomyces cerevisiae
Classification: PROTEIN TRANSPORT/EXOCYTOSIS
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-08-03
Authors: Yamashita, M., Sato, Y., Yamagata, A., Mimura, H., Yoshikawa, A., Fukai, S.
PDB entry 3a59: Structure of Hemoglobin from flightless bird (Struthio camelus)
Classification: OXYGEN STORAGE, OXYGEN TRANSPORT
Source organism: Struthio camelus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.41 Å
Deposited: 2009-08-03
Authors: Jaimohan, S.M., Naresh, M.D., Mandal, A.B.
PDB entry 3a5a: Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH5.6 coordinates)
Classification: OXYGEN TRANSPORT
Source organism: Tokunagayusurika akamusi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2009-08-05
Authors: Kuwada, T., Hasegawa, T., Takagi, T., Shishikura, F.
PDB entry 3a5b: Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH6.5 coordinates)
Classification: OXYGEN TRANSPORT
Source organism: Tokunagayusurika akamusi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2009-08-05
Authors: Kuwada, T., Hasegawa, T., Takagi, T., Shishikura, F.
PDB entry 3a5c: Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.51 Å
Deposited: 2009-08-06
Authors: Numoto, N., Hasegawa, Y., Takeda, K., Miki, K.
PDB entry 3a5d: Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 4.8 Å
Deposited: 2009-08-06
Authors: Numoto, N., Hasegawa, Y., Takeda, K., Miki, K.
PDB entry 3a5e: Crystal structure of 5K RNase Sa
Classification: HYDROLASE
Source organism: Streptomyces aureofaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-08-06
Authors: Takano, K.
PDB entry 3a5f: High-resolution structure of DHDPS from Clostridium botulinum in complex with pyruvate
Classification: LYASE
Source organism: Clostridium botulinum A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2009-08-06
Authors: Atkinson, S.C., Dobson, R.C.J., Perugini, M.A.
PDB entry 3a5g: Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)
Classification: OXYGEN TRANSPORT
Source organism: Tokunagayusurika akamusi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2009-08-06
Authors: Kuwada, T., Hasegawa, T., Takagi, T., Shishikura, F.
PDB entry 3a5i: Structure of the cytoplasmic domain of FlhA
Classification: PROTEIN TRANSPORT
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-08-07
Authors: Imada, K., Saijo-Hamano, Y., Shimada, M., Namba, K.
PDB entry 3a5j: Crystal structure of protein-tyrosine phosphatase 1B
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-08-08
Authors: Ito, S.
PDB entry 3a5k: Crystal structure of protein-tyrosine phosphatase 1B
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2009-08-08
Authors: Ito, S.
PDB entry 3a5l: Crystal Structure of a Dictyostelium P109A Mg2+-Actin in Complex with Human Gelsolin Segment 1
Classification: CONTRACTILE PROTEIN
Source organism: Dictyostelium discoideum; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-08-09
Authors: Murakami, K., Yasunaga, T., Noguchi, T.Q., Uyeda, T.Q., Wakabayashi, T.
PDB entry 3a5m: Crystal Structure of a Dictyostelium P109I Mg2+-Actin in Complex with Human Gelsolin Segment 1
Classification: CONTRACTILE PROTEIN
Source organism: DICTYOSTELIUM DISCOIDEUM; HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-08-09
Authors: Murakami, K., Yasunaga, T., Noguchi, T.Q., Uyeda, T.Q., Wakabayashi, T.
PDB entry 3a5n: Crystal Structure of a Dictyostelium P109A Ca2+-Actin in Complex with Human Gelsolin Segment 1
Classification: CONTRACTILE PROTEIN
Source organism: DICTYOSTELIUM DISCOIDEUM; HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2009-08-09
Authors: Murakami, K., Yasunaga, T., Noguchi, T.Q., Uyeda, T.Q., Wakabayashi, T.
PDB entry 3a5o: Crystal Structure of a Dictyostelium P109I Ca2+-Actin in Complex with Human Gelsolin Segment 1
Classification: CONTRACTILE PROTEIN
Source organism: DICTYOSTELIUM DISCOIDEUM; HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-08-09
Authors: Murakami, K., Yasunaga, T., Noguchi, T.Q., Uyeda, T.Q., Wakabayashi, T.
PDB entry 3a5p: Crystal structure of hemagglutinin
Classification: SUGAR BINDING PROTEIN
Source organism: Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2009-08-10
Authors: Watanabe, N., Sakai, N., Nakamura, T., Nabeshima, Y., Kouno, T., Mizuguchi, M., Kawano, K.
PDB entry 3a5q: Benzalacetone synthase from Rheum palmatum
Classification: TRANSFERASE
Source organism: Rheum palmatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-10
Authors: Morita, H., Kato, R., Abe, I., Sugio, S., Kohno, T.
PDB entry 3a5r: Benzalacetone synthase from Rheum palmatum complexed with 4-coumaroyl-primed monoketide intermediate
Classification: TRANSFERASE
Source organism: Rheum palmatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-08-10
Authors: Morita, H., Kato, R., Abe, I., Sugio, S., Kohno, T.
PDB entry 3a5s: Benzalacetone synthase (I207L/L208F)
Classification: TRANSFERASE
Source organism: Rheum palmatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-10
Authors: Morita, H., Kato, R., Abe, I., Sugio, S., Kohno, T.
PDB entry 3a5t: Crystal structure of MafG-DNA complex
Classification: TRANSCRIPTION REGULATOR/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-08-11
Authors: Kurokawa, H., Motohashi, H., Sueno, S., Kimura, M., Takagawa, H., Kanno, Y., Yamamoto, M., Tanaka, T.
PDB entry 3a5u: Promiscuity and specificity in DNA binding to SSB: Insights from the structure of the Mycobacterium smegmatis SSB-ssDNA complex
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium smegmatis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-08-12
Authors: Kaushal, P.S., Manjunath, G.P., Sekar, K., Muniyappa, K., Vijayan, M.
PDB entry 3a5v: Crystal structure of alpha-galactosidase I from Mortierella vinacea
Classification: HYDROLASE
Source organism: Umbelopsis vinacea
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-08-12
Authors: Fujimoto, Z., Kaneko, S., Kobayashi, H.
PDB entry 3a5w: Peroxiredoxin (wild type) from Aeropyrum pernix K1 (reduced form)
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-08-12
Authors: Nakamura, T., Kado, Y., Yamaguchi, T., Matsumura, H., Ishikawa, K., Inoue, T.
PDB entry 3a5x: L-type straight flagellar filament made of full-length flagellin
Classification: STRUCTURAL PROTEIN, MOTOR PROTEIN
Source organism: Salmonella typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2009-08-13
Authors: Maki-Yonekura, S., Yonekura, K., Namba, K.
PDB entry 3a5y: Crystal structure of GenX from Escherichia coli in complex with lysyladenylate analog
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-08-17
Authors: Sumida, T., Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3a5z: Crystal structure of Escherichia coli GenX in complex with elongation factor P
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-08-17
Authors: Sumida, T., Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 3a60: Crystal structure of unphosphorylated p70S6K1 (Form I)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-08-17
Authors: Sunami, T., Byrne, N., Diehl, R.E., Funabashi, K., Hall, D.L., Ikuta, M., Patel, S.B., Shipman, J.M., Smith, R.F., Takahashi, I., Zugay-Murphy, J., Iwasawa, Y., Lumb, K.J., Munshi, S.K., Sharma, S.
PDB entry 3a61: Crystal structure of unphosphorylated p70S6K1 (Form II)
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.43 Å
Deposited: 2009-08-18
Authors: Sunami, T., Byrne, N., Diehl, R.E., Funabashi, K., Hall, D.L., Ikuta, M., Patel, S.B., Shipman, J.M., Smith, R.F., Takahashi, I., Zugay-Murphy, J., Iwasawa, Y., Lumb, K.J., Munshi, S.K., Sharma, S.
PDB entry 3a62: Crystal structure of phosphorylated p70S6K1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2009-08-18
Authors: Sunami, T., Byrne, N., Diehl, R.E., Funabashi, K., Hall, D.L., Ikuta, M., Patel, S.B., Shipman, J.M., Smith, R.F., Takahashi, I., Zugay-Murphy, J., Iwasawa, Y., Lumb, K.J., Munshi, S.K., Sharma, S.
PDB entry 3a64: Crystal structure of CcCel6C, a glycoside hydrolase family 6 enzyme, from Coprinopsis cinerea
Classification: HYDROLASE
Source organism: Coprinopsis cinerea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-08-21
Authors: Liu, Y., Yoshida, M., Kurakata, Y., Miyazaki, T., Nishikawa, A., Tonozuka, T.
PDB entry 3a65: Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/H266N mutant with substrate
Classification: HYDROLASE
Source organism: Flavobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2009-08-21
Authors: Kawashima, Y., Shibata, N., Higuchi, Y., Takeo, M., Negoro, S.
PDB entry 3a66: Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/H266N/D370Y mutant with substrate
Classification: HYDROLASE
Source organism: Flavobacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2009-08-21
Authors: Kawashima, Y., Shibata, N., Higuchi, Y., Takeo, M., Negoro, S.
PDB entry 3a67: Crystal Structure of HyHEL-10 Fv mutant LN31D complexed with hen egg white lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-24
Authors: Yokota, A., Tsumoto, K., Shiroishi, M., Nakanishi, T., Kondo, H., Kumagai, I.
PDB entry 3a68: Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin
Classification: OXIDOREDUCTASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-26
Authors: Masuda, T., Goto, F., Yoshihara, T., Mikami, B.
PDB entry 3a69: Atomic model of the bacterial flagellar hook based on docking an X-ray derived structure and terminal two alpha-helices into an 7.1 angstrom resolution cryoEM map
Classification: MOTOR PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2009-08-26
Authors: Fujii, T., Kato, T., Namba, K.
PDB entry 3a6b: Crystal Structure of HyHEL-10 Fv mutant LN32D complexed with hen egg white lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-28
Authors: Yokota, A., Tsumoto, K., Shiroishi, M., Nakanishi, T., Kondo, H., Kumagai, I.
PDB entry 3a6c: Crystal Structure of HyHEL-10 Fv mutant LN92D complexed with hen egg white lysozyme
Classification: IMMUNE SYSTEM/HYDROLASE
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-08-28
Authors: Yokota, A., Tsumoto, K., Shiroishi, M., Nakanishi, T., Kondo, H., Kumagai, I.
PDB entry 3a6d: Creatininase complexed with 1-methylguanidine
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-08-31
Authors: Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
PDB entry 3a6e: W174F mutant creatininase, type I
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-08-31
Authors: Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
PDB entry 3a6f: W174F mutant creatininase, Type II
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2009-08-31
Authors: Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
PDB entry 3a6g: W154F mutant creatininase
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-08-31
Authors: Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
PDB entry 3a6h: W154A mutant creatininase
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-08-31
Authors: Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
PDB entry 3a6j: E122Q mutant creatininase complexed with creatine
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-02
Authors: Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
PDB entry 3a6k: The E122Q mutant creatininase, Mn-Zn type
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-09-02
Authors: Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
PDB entry 3a6l: E122Q mutant creatininase, Zn-Zn type
Classification: HYDROLASE
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-02
Authors: Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
PDB entry 3a6m: Crystal structure of GrpE from Thermus thermophilus HB8
Classification: CHAPERONE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.23 Å
Deposited: 2009-09-03
Authors: Nakamura, A., Takumi, K., Miki, K.
PDB entry 3a6n: The nucleosome containing a testis-specific histone variant, human H3T
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2009-09-04
Authors: Tachiwana, H., Kagawa, W., Osakabe, A., Koichiro, K., Shiga, T., Kimura, H., Kurumizaka, H.
PDB entry 3a6o: Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/acarbose complex
Classification: HYDROLASE
Source organism: Thermoactinomyces vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-09-07
Authors: Ohtaki, A., Mizuno, M., Tonozuka, T., Sakano, Y., Kamitori, S.
PDB entry 3a6p: Crystal structure of Exportin-5:RanGTP:pre-miRNA complex
Classification: PROTEIN TRANSPORT/NUCLEAR PROTEIN/RNA
Source organism: Canis lupus familiaris; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2009-09-07
Authors: Okada, C., Yamashita, E., Lee, S.J., Shibata, S., Katahira, J., Nakagawa, A., Yoneda, Y., Tsukihara, T.
PDB entry 3a6q: E13T mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2009-09-08
Authors: Nakanishi, T., Haruyama, Y., Inoue, H., Kitamura, M.
PDB entry 3a6r: E13Q mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Classification: ELECTRON TRANSPORT
Source organism: Desulfovibrio vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2009-09-08
Authors: Nakanishi, T., Haruyama, Y., Inoue, H., Kitamura, M.
PDB entry 3a6s: Crystal structure of the MutT protein
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-09
Authors: Nakamura, T., Yamagata, Y.
PDB entry 3a6t: Crystal structure of MutT-8-OXO-DGMP complex
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2009-09-09
Authors: Nakamura, T., Yamagata, Y.
PDB entry 3a6u: Crystal structure of MutT-8-OXO-dGMP-MN(II) complex
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2009-09-09
Authors: Nakamura, T., Yamagata, Y.
PDB entry 3a6v: Crystal structure of the MutT protein in MN(II) bound holo form
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-09
Authors: Nakamura, T., Yamagata, Y.
PDB entry 3a6z: Crystal structure of Pseudomonas sp. MIS38 lipase (PML) in the open conformation following dialysis against Ca-free buffer
Classification: HYDROLASE
Source organism: Pseudomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2009-09-10
Authors: Angkawidjaja, C., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3a70: Crystal structure of Pseudomonas sp. MIS38 lipase in complex with diethyl phosphate
Classification: HYDROLASE
Source organism: Pseudomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2009-09-10
Authors: Angkawidjaja, C., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
PDB entry 3a71: High resolution structure of Penicillium chrysogenum alpha-L-arabinanase
Classification: HYDROLASE
Source organism: Penicillium chrysogenum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2009-09-11
Authors: Sogabe, Y.
PDB entry 3a72: High resolution structure of Penicillium chrysogenum alpha-L-arabinanase complexed with arabinobiose
Classification: HYDROLASE
Source organism: Penicillium chrysogenum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2009-09-11
Authors: Sogabe, Y.
PDB entry 3a73: Crystal Structure Analysis of Human serum albumin complexed with delta 12-prostaglandin J2
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2009-09-11
Authors: Ito, S.
PDB entry 3a74: Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with Diadenosine Tetraphosphate (AP4A)
Classification: LIGASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-13
Authors: Sakurama, H., Takita, T., Mikami, B., Itoh, T., Yasukawa, K., Inouye, K.
PDB entry 3a75: Crystal structure of glutamate complex of halotolerant &gamma;-glutamyltranspeptidase from Bacillus subtilis
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-09-14
Authors: Wada, K., Fukuyama, K.
PDB entry 3a76: The crystal structure of LinA
Classification: LYASE
Source organism: Sphingomonas paucimobilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2009-09-15
Authors: Okai, M., Kubota, K., Fukuda, M., Nagata, Y., Nagata, K., Tanokura, M.
PDB entry 3a77: The crystal structure of phosphorylated IRF-3
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2009-09-17
Authors: Takahasi, K., Horiuchi, M., Noda, N.N., Inagaki, F.
PDB entry 3a78: Crystal structure of the human VDR ligand binding domain bound to the natural metabolite 1alpha,25-dihydroxy-3-epi-vitamin D3
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2009-09-18
Authors: Sato, Y., Sigueiro, R., Antony, P., Rochel, N., Moras, D.
PDB entry 3a79: Crystal structure of TLR2-TLR6-Pam2CSK4 complex
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2009-09-20
Authors: Kang, J.Y., Jin, M.S., Lee, J.-O.
PDB entry 3a7a: Crystal structure of E. coli lipoate-protein ligase A in complex with octyl-amp and apoH-protein
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2009-09-20
Authors: Fujiwara, K., Hosaka, H., Nakagawa, A.
PDB entry 3a7b: Crystal structure of TLR2-Streptococcus Pneumoniae lipoteichoic acid complex
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2009-09-20
Authors: Kang, J.Y., Jin, M.S., Lee, J.-O.
PDB entry 3a7c: Crystal structure of TLR2-PE-DTPA complex
Classification: IMMUNE SYSTEM
Source organism: Eptatretus burgeri; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-09-20
Authors: Kang, J.Y., Jin, M.S., Lee, J.-O.
PDB entry 3a7d: Crystal Structures of rat Catechol-O-Methyltransferase complexed with new bi-substrate type inhibitor
Classification: TRANSFERASE
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2009-09-26
Authors: Tsuji, E.
PDB entry 3a7e: Crystal structure of human COMT complexed with SAM and 3,5-dinitrocatechol
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-09-26
Authors: Tsuji, E.
PDB entry 3a7f: Human MST3 kinase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2009-09-26
Authors: Ko, T.P., Jeng, W.Y., Liu, C.I., Lai, M.D., Wang, A.H.J.
PDB entry 3a7g: Human MST3 kinase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-26
Authors: Ko, T.P., Jeng, W.Y., Liu, C.I., Lai, M.D., Wang, A.H.J.
PDB entry 3a7h: Human MST3 kinase in complex with ATP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2009-09-26
Authors: Ko, T.P., Jeng, W.Y., Liu, C.I., Lai, M.D., Wang, A.H.J.
PDB entry 3a7i: Human MST3 kinase in complex with adenine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2009-09-26
Authors: Ko, T.P., Jeng, W.Y., Liu, C.I., Lai, M.D., Wang, A.H.J.
PDB entry 3a7j: Human MST3 kinase in complex with MnADP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2009-09-27
Authors: Ko, T.P., Jeng, W.Y., Liu, C.I., Lai, M.D., Wang, A.H.J.
PDB entry 3a7k: Crystal structure of halorhodopsin from Natronomonas pharaonis
Classification: MEMBRANE PROTEIN
Source organism: Natronomonas pharaonis DSM 2160
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2009-09-27
Authors: Kouyama, T.
PDB entry 3a7l: Crystal structure of E. coli apoH-protein
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2009-09-28
Authors: Fujiwara, K., Maita, N.
PDB entry 3a7m: Structure of FliT, the flagellar type III chaperone for FliD
Classification: GENE REGULATION, CHAPERONE
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2009-09-29
Authors: Imada, K., Minamino, T., Kinoshita, M., Namba, K.
PDB entry 3a7n: Crystal structure of uracil-DNA glycosylase from Mycobacterium tuberculosis
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2009-09-29
Authors: Kaushal, P.S., Talawar, R.K., Varshney, U., Vijayan, M.
PDB entry 3a7o: The crystal structure of the coiled-coil domain of Saccharomyces cerevisiae Atg16
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2009-10-01
Authors: Fujioka, Y., Noda, N.N., Inagaki, F.
PDB entry 3a7p: The crystal structure of Saccharomyces cerevisiae Atg16
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2009-10-01
Authors: Fujioka, Y., Noda, N.N., Inagaki, F.
PDB entry 3a7q: Structural basis for specific recognition of reelin by its receptors
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2009-10-01
Authors: Yasui, N., Nogi, T., Takagi, J.
PDB entry 3a7r: Crystal structure of E. coli lipoate-protein ligase A in complex with lipoyl-AMP.
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2009-10-01
Authors: Fujiwara, K., Hosaka, H.
PDB entry 3a7s: Catalytic domain of UCH37
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2009-10-04
Authors: Nishio, K., Kim, S.W., Kawai, K., Mizushima, T., Yamane, T., Hamazaki, J., Murata, S., Tanaka, K.
PDB entry 3a7t: Crystal Structure of Trypsin complexed with 4-formylbenzimidamide
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a7u: Crystal structure of the bovine lipoyltransferase in its unliganded form
Classification: TRANSFERASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.44 Å
Deposited: 2009-10-05
Authors: Fujiwara, K., Hosaka, H., Nakagawa, A.
PDB entry 3a7v: Crystal Structure of Trypsin complexed with 3-formylbenzimidamide
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a7w: Crystal Structure of Trypsin complexed with (E)-4-((tetrahydro-2H-pyran-2-yloxyimino)methyl)benzimidamide (soaking 4hours)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a7x: Crystal Structure of Trypsin complexed with (E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid (soaking 45seconds)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.
PDB entry 3a7y: Crystal Structure of Trypsin complexed with (E)-4-((1-methylpiperidin-3-yloxyimino)methyl)benzimidamide (soaking 2hours)
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2009-10-05
Authors: Yamane, J., Yao, M., Tanaka, I.