LiteFold/PDB huggingface dataset:
PDB entry 8i7t: The crystal structure of human abl1 kinase domain in complex with ABL1-B4
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.80005 Å
Deposited: 2023-02-02
Authors: Zhu, C., Zhang, Z.
PDB entry 8i7u: Crystal structure of alpha-Oxoamine Synthase Alb29 with PLP cofactor
Classification: TRANSFERASE
Source organism: Streptomyces albogriseolus 1-36
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-02-02
Authors: Xu, M.J., Zhang, D.K.
PDB entry 8i7v: Cryo-EM structure of Acipimox bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-02-02
Authors: Park, J.H., Ishimoto, N., Park, S.Y.
PDB entry 8i7w: Cryo-EM structure of GSK256073 bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-02-02
Authors: Park, J.H., Ishimoto, N., Park, S.Y.
PDB entry 8i7x: Crystal structure of human ClpP in complex with ZG36
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2023-02-02
Authors: Wang, P.Y., Gan, J.H., Yang, C.-G.
PDB entry 8i7z: The crystal structure of human abl1 kinase domain in complex with ABL1-B5
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25496 Å
Deposited: 2023-02-02
Authors: Zhu, C., Zhang, Z.
PDB entry 8i80: Crystal structure of Cph001-D189N
Classification: TRANSFERASE
Source organism: Streptosporangium roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-02-02
Authors: Chang, C.Y., Toh, S.I., Elaine K, J.
PDB entry 8i81: Crystal structure of horse spleen L-ferritin A115G mutant at -180deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-02-02
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8i82: Crystal structure of Cph001-D189N in complex with CMN IIA
Classification: TRANSFERASE
Source organism: Saccharothrix mutabilis subsp. capreolus; Streptosporangium roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-02-03
Authors: Chang, C.Y., Toh, S.I., Elaine K, J.
PDB entry 8i83: Crystal Structure of phosphinothricin dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Lysinibacillus composti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2023-02-03
Authors: Cheng, F., Xue, Y.P., Zheng, Y.G., Zou, S.P.
PDB entry 8i84: Crystal structure of Cph001-D189N in complex with CMN IIB
Classification: TRANSFERASE
Source organism: Saccharothrix mutabilis subsp. capreolus; Streptosporangium roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-03
Authors: Chang, C.Y., Toh, S.I., Elaine K, J., Hsiao, P.Y.
PDB entry 8i85: Crystal structure of Cph001-D189N in complex with ATP
Classification: TRANSFERASE
Source organism: Streptosporangium roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2023-02-03
Authors: Chang, C.Y., Toh, S.I., Elaine K, J., Hsiao, P.Y.
PDB entry 8i86: Crystal structure of Cph001-D189N in complex with GTP
Classification: TRANSFERASE
Source organism: Streptosporangium roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2023-02-03
Authors: Chang, C.Y., Toh, S.I., Elaine K, J., Hsiao, P.Y.
PDB entry 8i87: Cryo-EM structure of TIR-APAZ/Ago-gRNA-DNA complex
Classification: ANTIVIRAL PROTEIN
Source organism: Maribacter polysiphoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-03
Authors: Zhang, H., Deng, Z.Q., Yu, G.M., Li, X.Z., Wang, X.S.
PDB entry 8i88: Cryo-EM structure of TIR-APAZ/Ago-gRNA complex
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN
Source organism: Maribacter polysiphoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-02-03
Authors: Zhang, H., Li, Z., Yu, G.M., Li, X.Z., Wang, X.S.
PDB entry 8i89: Crystal structure of Cph001-D189N in complex with VIO
Classification: TRANSFERASE
Source organism: Streptomyces vinaceus; Streptosporangium roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-03
Authors: Chang, C.Y., Toh, S.I., Elaine K, J., Hsiao, P.Y.
PDB entry 8i8a: Cryo-EM structure of the major capsid protein VP39 of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Classification: VIRAL PROTEIN
Source organism: Autographa californica multiple nucleopolyhedrovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-02-03
Authors: Jia, X., Zhang, Q.
PDB entry 8i8b: Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Classification: VIRAL PROTEIN
Source organism: Autographa californica multiple nucleopolyhedrovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.31 Å
Deposited: 2023-02-03
Authors: Jia, X., Gao, Y., Zhang, Q.
PDB entry 8i8c: Plug structure of the Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Classification: VIRAL PROTEIN
Source organism: Autographa californica multiple nucleopolyhedrovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.93 Å
Deposited: 2023-02-03
Authors: Jia, X., Gao, Y., Zhang, Q.
PDB entry 8i8d: Acyl-ACP synthetase structure bound to MC7-ACP
Classification: CYTOSOLIC PROTEIN/TRANSPORT PROTEIN
Source organism: Escherichia coli; Vibrio harveyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2023-02-03
Authors: Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
PDB entry 8i8e: Acyl-ACP synthetase structure bound to C18:1-ACP
Classification: TRANSPORT PROTEIN/CYTOSOLIC PROTEIN
Source organism: Escherichia coli; Vibrio harveyi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2023-02-04
Authors: Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
PDB entry 8i8f: Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed compound 1
Classification: HYDROLASE-INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-02-04
Authors: Shi, X., Liu, W.
PDB entry 8i8g: Crystal structure of Cph001-D189N in complex with CMN IIA and ATP
Classification: TRANSFERASE
Source organism: Saccharothrix mutabilis subsp. capreolus; Streptosporangium roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-02-04
Authors: Chang, C.Y., Toh, S.I., Elaine K, J., Hsiao, P.Y.
PDB entry 8i8h: Crystal structure of Cph001-D189N in complex with VIO and ATP
Classification: TRANSFERASE
Source organism: Streptomyces vinaceus; Streptosporangium roseum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-02-04
Authors: Chang, C.Y., Toh, S.I., Elaine K, J., Hsiao, P.Y.
PDB entry 8i8i: Crystal structure of Phosphopantetheine adenylyltransferase from Klebsiella pneumoniae at 2.59 A resolution
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-02-04
Authors: Ahmad, N., Singh, P.K., Sharma, P., Sharma, S., Singh, T.P.
PDB entry 8i8p: Crystal structure of the complex of phosphopantetheine adenylyltransferase from Acinetobacter baumannii with Dephosphocoenzyme-A at 2.19 A resolution.
Classification: TRANSFERASE
Source organism: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2023-02-04
Authors: Ahmad, N., Viswanathan, V., Gupta, A., Sharma, P., Sharma, S., Singh, T.P.
PDB entry 8i8q: Crystal structure of horse spleen L-ferritin H114A mutant at -180deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-02-05
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8i8r: Cryo-EM Structure of OmpC3-MlaA Complex in MSP2N2 Nanodiscs
Classification: LIPID TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-02-05
Authors: Yeow, J., Luo, M., Chng, S.S.
PDB entry 8i8s: Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGMP and Mn2+
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-02-05
Authors: Nakamura, T., Yamagata, Y.
PDB entry 8i8t: Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dAMP and Mn2+
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2023-02-05
Authors: Nakamura, T., Yamagata, Y.
PDB entry 8i8u: Crystal structure of horse spleen L-ferritin S118A mutant at -180deg Celsius.
Classification: METAL BINDING PROTEIN
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-02-05
Authors: Maity, B., Tian, J., Abe, S., Ueno, T.
PDB entry 8i8x: Cryo-EM Structure of OmpC3-MlaA-MlaC Complex in MSP2N2 Nanodiscs
Classification: LIPID TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2023-02-05
Authors: Yeow, J., Luo, M., Chng, S.S.
PDB entry 8i8y: A mutant of the C-terminal complex of proteins 4.1G and NuMA
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-02-06
Authors: Hu, X.
PDB entry 8i8z: Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, apo form
Classification: PLANT PROTEIN
Source organism: Nemophila menziesii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-02-06
Authors: Murayama, K., Kato-Murayama, M., Shirouzu, M.
PDB entry 8i90: Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with UDP-glucose
Classification: PLANT PROTEIN
Source organism: Nemophila menziesii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-06
Authors: Murayama, K., Kato-Murayama, M., Shirouzu, M.
PDB entry 8i91: ACE2-SIT1 complex bound with proline
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Zhang, Y.Y., Shen, Y.P., Yan, R.H.
PDB entry 8i92: ACE2-B0AT1 complex bound with glutamine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Zhang, Y.Y., Shen, Y.P., Yan, R.H.
PDB entry 8i93: ACE2-B0AT1 complex bound with methionine
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Zhang, Y.Y., Shen, Y.P., Yan, R.H.
PDB entry 8i94: Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with luteolin
Classification: PLANT PROTEIN
Source organism: Nemophila menziesii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2023-02-06
Authors: Murayama, K., Kato-Murayama, M., Shirouzu, M.
PDB entry 8i95: Structure of EP54-C3aR-Go complex
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-02-06
Authors: Yadav, M.K., Yadav, R., Maharana, J., Sarma, P., Banerjee, R., Shukla, A.K., Gati, C.
PDB entry 8i96: Cryo-EM structure of TLR7/TH-407b complex
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-06
Authors: Zhang, Z.
PDB entry 8i97: Structure of Apo-C3aR-Go complex (Glacios)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-02-06
Authors: Yadav, M.K., Yadav, R., Maharana, J., Sarma, P., Banerjee, R., Shukla, A.K., Gati, C.
PDB entry 8i98: Crystal structure of TePixD Y8F
Classification: ELECTRON TRANSPORT
Source organism: Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-02-06
Authors: Hu, R., Lin, L., Lu, Q.
PDB entry 8i99: N-carbamoyl-D-amino-acid hydrolase mutant - M4Th3
Classification: HYDROLASE
Source organism: Nitratireductor indicus C115
Experimental method: X-RAY DIFFRACTION
Resolution: 3.17 Å
Deposited: 2023-02-06
Authors: Hu, J.M., Ni, Y., Xu, G.C.
PDB entry 8i9a: Structure of EP54-C3aR-Gq complex
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2023-02-06
Authors: Yadav, M.K., Yadav, R., Maharana, J., Sarma, P., Banerjee, R., Shukla, A.K., Gati, C.
PDB entry 8i9b: S-ECD (Omicron BA.2.75) in complex with PD of ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Shen, Y.P., Zhang, Y.Y., Yan, R.H.
PDB entry 8i9c: S-ECD (Omicron BF.7) in complex with PD of ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Shen, Y.P., Zhang, Y.Y., Yan, R.H.
PDB entry 8i9d: S-ECD (Omicron XBB.1) in complex with PD of ACE2
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Shen, Y.P., Zhang, Y.Y., Yan, R.H.
PDB entry 8i9e: S-RBD(Omicron BA.3) in complex with PD of ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Shen, Y.P., Zhang, Y.Y., Yan, R.H.
PDB entry 8i9f: S-RBD (Omicron BA.2.75) in complex with PD of ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Shen, Y.P., Zhang, Y.Y., Yan, R.H.
PDB entry 8i9g: S-RBD (Omicron BF.7) in complex with PD of ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Shen, Y.P., Zhang, Y.Y., Yan, R.H.
PDB entry 8i9h: S-RBD (Omicron XBB.1) in complex with PD of ACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-06
Authors: Li, Y.N., Shen, Y.P., Zhang, Y.Y., Yan, R.H.
PDB entry 8i9i: Glutamyl-tRNA synthetase from Escherichia Coli bound to Glutamate and Zinc
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-02-07
Authors: Dev, A., Chongdar, N., Dasgupta, S., Basu, G.
PDB entry 8i9j: The PKR and E3L complex
Classification: VIRAL PROTEIN/TRANSFERASE
Source organism: Homo sapiens; Vaccinia virus WR
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.39 Å
Deposited: 2023-02-07
Authors: Han, C.W., Kim, H.J.
PDB entry 8i9l: Structure of C3a-C3aR-Go complex (Composite map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-02-07
Authors: Yadav, M.K., Yadav, R., Maharana, J., Sarma, P., Banerjee, R., Shukla, A.K., Gati, C.
PDB entry 8i9m: The RAGE and HMGB1 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.19 Å
Deposited: 2023-02-07
Authors: Han, C.W., Kim, H.J.
PDB entry 8i9o: ecCTPS filament bound with CTP, NADH, DON
Classification: HYDROLASE
Source organism: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-02-07
Authors: Guo, C.J., Liu, J.L.
PDB entry 8i9p: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8i9q: The focused refinement of CCT4-PhLP2A from TRiC-PhLP2A complex in the open state
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.22 Å
Deposited: 2023-02-07
Authors: Roh, S.H., Park, J., Kim, H., Lim, S.
PDB entry 8i9r: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8i9s: Structure of Apo-C3aR-Go complex (Titan)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2023-02-07
Authors: Yadav, M.K., Yadav, R., Maharana, J., Sarma, P., Banerjee, R., Shukla, A.K., Gati, C.
PDB entry 8i9t: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8i9u: Human TRiC-PhLP2A complex in the open state
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-07
Authors: Roh, S.H., Park, J., Kim, H., Lim, S.
PDB entry 8i9v: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8i9w: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8i9x: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8i9y: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8i9z: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8ia0: Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6
Classification: RIBOSOME
Source organism: Chaetomium thermophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-02-07
Authors: Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
PDB entry 8ia1: plastidial glycerol-3-phosphate acyltransferases (GPAT) from the green alga Myrmecia incisa
Classification: TRANSFERASE
Source organism: Lobosphaera incisa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-02-07
Authors: Song, X.
PDB entry 8ia2: Structure of C5a bound human C5aR1 in complex with Go (Composite map)
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2023-02-07
Authors: Yadav, M.K., Yadav, R., Maharana, J., Banerjee, R., Shukla, A.K., Gati, C.
PDB entry 8ia3: Crystal structure of human USF2 bHLHLZ domain in complex with DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-02-07
Authors: Huang, C., Fang, P., Wang, J.
PDB entry 8ia4: Crystal structure of Cas2 in complex with AcrVA5-peptide
Classification: GENE REGULATION
Source organism: Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-07
Authors: Mo, X.
PDB entry 8ia5: Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX
Classification: ONCOPROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-02-07
Authors: Cheng, X.Y., Wei, Q.Y., Huang, Y., Su, Z.D.
PDB entry 8ia6: Crystal structure of scFv antibody against Phospholipase A2 of Echis carinatus venom
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-02-07
Authors: Kumar, A., Madni, Z.K., Salunke, D.M.
PDB entry 8ia7: Structural insights into human brain gut peptide cholecystokinin receptors
Classification: NEUROPEPTIDE
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-08
Authors: Ding, Y., Zhang, H., Liao, Y., Chen, L., Ji, S.
PDB entry 8ia8: Cryo-EM structure of C3aR-Gi-scFv16 bound with E7 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2023-02-08
Authors: Liao, Q., Chen, G., Du, Y., Ye, R.D.
PDB entry 8ia9: SpnK Methyltransferase from the Spinosyn Biosynthetic Pathway in Complex with Mg
Classification: TRANSFERASE
Source organism: Saccharopolyspora spinosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-02-08
Authors: Huang, S., Zheng, J.
PDB entry 8iaa: SpnK Methyltransferase from the Spinosyn Biosynthetic Pathway in Complex with SAH
Classification: TRANSFERASE
Source organism: Saccharopolyspora spinosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-08
Authors: Huang, S., Zheng, J.
PDB entry 8iab: The Arabidopsis CLCa transporter bound with chloride, ATP and PIP2
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2023-02-08
Authors: Yang, Z., Zhang, X., Zhang, P.
PDB entry 8iad: The Arabidopsis CLCa transporter bound with nitrate, ATP and PIP2
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2023-02-08
Authors: Yang, Z., Zhang, X., Zhang, P.
PDB entry 8iag: Crystal structure of rDcaUPO A161C mutant from Daldinia caldariorum
Classification: OXIDOREDUCTASE
Source organism: Daldinia caldariorum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-02-08
Authors: Li, T., Wang, Y.
PDB entry 8iah: Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Global map
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-08
Authors: Li, N., Chen, S., Gao, N.
PDB entry 8iai: Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State II, Global map
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-02-08
Authors: Li, N., Chen, S., Gao, N.
PDB entry 8iaj: Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3A) complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Arabidopsis thaliana; Saccharomyces cerevisiae; Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-08
Authors: Xie, T., Gong, X.
PDB entry 8iak: Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3A-N71A) complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Arabidopsis thaliana; Saccharomyces cerevisiae; Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-08
Authors: Xie, T., Gong, X.
PDB entry 8iam: Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3D) complex
Classification: TRANSFERASE/INHIBITOR
Source organism: Arabidopsis thaliana; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-02-08
Authors: Xie, T., Gong, X.
PDB entry 8ian: Crystal structure of CtPL-H210S/F214I mutant
Classification: HYDROLASE
Source organism: Caldimonas taiwanensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-02-08
Authors: Li, X., Shi, B.L., Zeng, Z.Y., Huang, J.-W., Chen, C.-C., Guo, R.-T.
PDB entry 8iao: Respiratory complex CI:CIII2, type I, Wild type mouse under thermoneutral temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-02-09
Authors: Shin, Y.-C., Liao, M.
PDB entry 8iap: Respiratory complex Peripheral Arm of CI, focus-refined map of type I, Wild type mouse under thermoneutral temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-09
Authors: Shin, Y.-C., Liao, M.
PDB entry 8iaq: Respiratory complex Membrane domain of CI, focused map of type I, Wild type mouse under thermoneutral temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-09
Authors: Shin, Y.-C., Liao, M.
PDB entry 8iar: Respiratory complex CIII2, focus-refined of type I, Wild type mouse under thermoneutral temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-09
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ias: Crystal structure of Streptococcus pneumoniae pyruvate kinase
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-09
Authors: Nakashima, R., Taguchi, A.
PDB entry 8iat: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-09
Authors: Nakashima, R., Taguchi, A.
PDB entry 8iau: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-02-09
Authors: Nakashima, R., Taguchi, A.
PDB entry 8iav: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with fructose 1,6-bisphosphate
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-02-09
Authors: Nakashima, R., Taguchi, A.
PDB entry 8iaw: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with phosphoenolpyruvate
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2023-02-09
Authors: Nakashima, R., Taguchi, A.
PDB entry 8iax: Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with phosphoenolpyruvate and fructose 1,6-bisphosphate
Classification: TRANSFERASE
Source organism: Streptococcus pneumoniae R6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-09
Authors: Nakashima, R., Taguchi, A.
PDB entry 8iaz: Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Firmicutes bacterium AM43-11BH; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-02-09
Authors: Yin, M., Zhou, F., Zhu, Y., Huang, Z.
PDB entry 8ib0: The amyloid structure of mouse RIPK1 RHIM-containing domain by solid-state NMR
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: SOLID-STATE NMR
Deposited: 2023-02-09
Authors: Liu, J., Xialian, W.
PDB entry 8ib1: Structure of the LAH31 Fab bound to an influenza virus HA epitope peptide
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-02-09
Authors: Suzuki, T., Hashiguchi, T.
PDB entry 8ib2: Structure of mammalian spectrin-actin junctional complex of membrane skeleton, Pointed-end segment, headpiece domain of dematin optimized
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-02-09
Authors: Li, N., Chen, S., Gao, N.
PDB entry 8ib4: Respiratory complex CI:CIII2, type IA, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-02-09
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ib5: Respiratory complex Peripheral Arm of CI, focus-refined map of type IA, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-09
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ib6: Respiratory complex Membrane domain of CI, focus-refined of type IA, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-09
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ib7: Respiratory complex CIII2, focus-refined of type IA, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-02-09
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ib8: Human TRiC-PhLP2A-actin complex in the closed state
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.42 Å
Deposited: 2023-02-09
Authors: Roh, S.H., Park, J., Kim, H., Lim, S.
PDB entry 8ib9: Respiratory complex CI:CIII2, type IB, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8iba: Respiratory complex Peripheral Arm of CI, focus-refined map of type IB, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ibb: Respiratory complex Membrane domain of CI, focus-refined of type IB, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ibc: Respiratory complex CIII2, focus-refined of type IB, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ibd: Respiratory complex CI:CIII2, type II, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ibe: Respiratory complex Peripheral Arm of CI, focus-refined map of type II, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ibf: Respiratory complex Membrane domain of CI, focus-refined of type II, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ibg: Respiratory complex CIII2, focus-refined of type II, Wild type mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ibh: Cep57 C-terminal domain
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-02-10
Authors: Chen, T., Yeh, H.-W., Cheng, H.-C.
PDB entry 8ibi: Inactive mutant of CtPL-H210S/F214I
Classification: HYDROLASE
Source organism: Caldimonas taiwanensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-02-10
Authors: Li, X., Shi, B.L., Zeng, Z.Y., Huang, J.-W., Chen, C.-C., Guo, R.-T.
PDB entry 8ibj: Inactive mutant of CtPL-H210S/F214I/N181A/F235L
Classification: HYDROLASE
Source organism: Caldimonas taiwanensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2023-02-10
Authors: Li, X., Shi, B.L., Zeng, Z.Y., Huang, J.-W., Chen, C.-C., Guo, R.-T.
PDB entry 8ibk: Crystal structure of Bacillus sp. AHU2216 GH13_31 Alpha-glucosidase E256Q/N258G in complex with maltotriose
Classification: HYDROLASE
Source organism: Bacillus sp. (in: firmicutes)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-02-10
Authors: Auiewiriyanukul, W., Saburi, W., Yu, J., Kato, K., Yao, M., Mori, H.
PDB entry 8ibl: MES bound form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H and S176A inactivation
Classification: HYDROLASE
Source organism: Saccharomonospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-02-10
Authors: Emori, M., Numoto, N., Kamiya, N., Oda, M.
PDB entry 8ibm: Sulfate bound form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H and S176A inactivation
Classification: HYDROLASE
Source organism: Saccharomonospora viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-10
Authors: Emori, M., Numoto, N., Kamiya, N., Oda, M.
PDB entry 8ibn: Cryo-EM structure of KpFtsZ single filament
Classification: CELL CYCLE
Source organism: Klebsiella pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2023-02-10
Authors: Fujita, J., Amesaka, H., Yoshizawa, T., Kuroda, N., Kamimura, N., Hibino, K., Konishi, T., Kato, Y., Hara, M., Inoue, T., Namba, K., Tanaka, S., Matsumura, H.
PDB entry 8ibo: Crystal structure of Wild-Type Mycobacterium tuberculosis ClpC1 N-terminal domain in complex with Lassomycin
Classification: CHAPERONE
Source organism: Lentzea kentuckyensis; Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2023-02-10
Authors: Jagdev, M.K., Vasudevan, D.
PDB entry 8ibp: Crystal structure of Mycobacterium tuberculosis R21K ClpC1 N-terminal domain in complex with Lassomycin
Classification: CHAPERONE
Source organism: Lentzea kentuckyensis; Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-02-10
Authors: Jagdev, M.K., Vasudevan, D.
PDB entry 8ibq: Bromodomain and Extra-terminal Domain (BET) BRD4
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-02-10
Authors: Cao, D., Zhiyan, D., Xiong, B.
PDB entry 8ibr: Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis in complex with glycerol
Classification: HYDROLASE
Source organism: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-02-10
Authors: Hidaka, M., Fushinobu, S., Gotoh, A., Katayama, T.
PDB entry 8ibs: Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis E160A/E318A mutant in complex with galactose
Classification: HYDROLASE
Source organism: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-02-10
Authors: Hidaka, M., Fushinobu, S., Gotoh, A., Katayama, T.
PDB entry 8ibt: Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis E318S mutant in complex with lacto-N-tetraose
Classification: HYDROLASE
Source organism: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-02-10
Authors: Hidaka, M., Fushinobu, S., Gotoh, A., Katayama, T.
PDB entry 8ibu: Cryo-EM structure of the erythromycin-bound motilin receptor-Gq protein complex
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2023-02-10
Authors: You, C., Jiang, Y., Xu, H.E., Xu, Y.
PDB entry 8ibv: Cryo-EM structure of the motilin-bound motilin receptor-Gq protein complex
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2023-02-10
Authors: Jiang, Y., Xu, H.E., You, C., Xu, Y.
PDB entry 8ibw: Structure of R2 with 3'UTR and DNA in binding state
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Bombyx mori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-02-10
Authors: Deng, P., Tan, S., Wang, J., Liu, J.J.
PDB entry 8ibx: Structure of R2 with 3'UTR and DNA in unwinding state
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Bombyx mori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2023-02-10
Authors: Deng, P., Tan, S., Wang, J., Liu, J.J.
PDB entry 8iby: Structure of R2 with 5'ORF
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bombyx mori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-02-10
Authors: Deng, P., Tan, S., Wang, J., Liu, J.J.
PDB entry 8ibz: Structure of R2 with 5'ORF and 3'UTR
Classification: RNA BINDING PROTEIN/RNA
Source organism: Bombyx mori
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-02-10
Authors: Deng, P., Tan, S., Wang, J., Liu, J.J.
PDB entry 8ic0: Cryo-EM structure of CXCL8 bound C-X-C chemokine receptor 1 in complex with Gi heterotrimer
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2023-02-10
Authors: Ishimoto, N., Park, J.H., Park, S.Y.
PDB entry 8ic1: endo-alpha-D-arabinanase EndoMA1 D51N mutant from Microbacterium arabinogalactanolyticum in complex with arabinooligosaccharides
Classification: HYDROLASE
Source organism: Microbacterium arabinogalactanolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-02-10
Authors: Li, J., Nakashima, C., Ishiwata, A., Fujita, K., Fushinobu, S.
PDB entry 8ic2: Respiratory complex CI:CIII2, type I, PERK -/- mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ic3: Respiratory complex Peripheral Arm of CI, focus-refined map of type I, PERK -/- mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ic4: Respiratory complex Membrane domain of CI, focus-refined of type I, PERK -/- mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ic5: Respiratory complex CIII2, focus-refined of type I, PERK -/- mouse under cold temperature
Classification: ELECTRON TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-02-10
Authors: Shin, Y.-C., Liao, M.
PDB entry 8ic6: exo-beta-D-arabinanase ExoMA2 from Microbacterium arabinogalactanolyticum in complex with Tris
Classification: HYDROLASE
Source organism: Microbacterium arabinogalactanolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-02-10
Authors: Fukushima, R., Kashima, T., Ishiwata, A., Fujita, K., Fushinobu, S.
PDB entry 8ic7: exo-beta-D-arabinofuranosidase ExoMA2 from Microbacterium arabinogalactanolyticum in complex with beta-D-arabinofuranose
Classification: HYDROLASE
Source organism: Microbacterium arabinogalactanolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-02-11
Authors: Fukushima, R., Kashima, T., Ishiwata, A., Fujita, K., Fushinobu, S.
PDB entry 8ic8: Exo-alpha-D-arabinofuranosidase from Microbacterium arabinogalactanolyticum
Classification: HYDROLASE
Source organism: Microbacterium arabinogalactanolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2023-02-11
Authors: Kashima, T., Arakawa, T., Yamada, C., Ishiwata, A., Fujita, K., Fushinobu, S.
PDB entry 8ic9: Lys48-linked K48C-diubiquitin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-02-11
Authors: Hiranyakorn, M., Yagi-Utsumi, M., Yanaka, S., Ohtsuka, N., Momiyama, N., Satoh, T., Kato, K.
PDB entry 8ica: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CACL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icb: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icc: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NO 5'-PHOSPHATE)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icd: REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE SITE
Classification: OXIDOREDUCTASE (NAD(A)-CHOH(D))
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 1990-05-30
Authors: Hurley, J.H., Dean, A.M., Sohl, J.L., Koshlandjunior, D.E., Stroud, R.M.
PDB entry 8ice: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CDCL2 (1 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icf: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND MGCL2 (50 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icg: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8ich: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8ici: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icj: DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8ick: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 1996-04-19
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icl: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND NICL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icm: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 1996-01-04
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8icn: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.
PDB entry 8ico: DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 1995-12-15
Authors: Pelletier, H., Sawaya, M.R.