LiteFold/PDB huggingface dataset:
PDB entry 9ob8: Crystal structure of human fatty acid binding protein 4 (FABP4) bound to 8-anilino-1-naphthalenesulfonic acid (ANS)
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-04-22
Authors: Birchfield, A.B., Musayev, F.N., Fuglestad, B.
PDB entry 9ob9: Crystal structure of nucleoside-diphosphate kinase from Cryptosporidium parvum in complex with with ADP and CTP
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-22
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9oba: Crystal structure of nucleoside-diphosphate kinase from Cryptosporidium parvum containing phosphorylated active site histidine
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-04-22
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9obc: Crystal structure of nucleoside-diphosphate kinase from Cryptosporidium parvum in complex with with ADP
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-04-22
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9obd: Crystal structure of human Argonaute2 in complex with a fully modified siRNA with a 5'-phenylpropargyl phosphate
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-04-22
Authors: Gebert, L.F.R., MacRae, I.J.
PDB entry 9obe: Crystal structure of human Argonaute2 in complex with a fully modified siRNA with a 5'-phenylpropyl phosphate
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-04-22
Authors: Gebert, L.F.R., MacRae, I.J.
PDB entry 9obh: Co-Structure of SARS-CoV-2 3C-like proteinase nsp5 with Compound 34
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.871 Å
Deposited: 2025-04-22
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9obi: Room Temperature X-Ray Structure of HIV-1 Protease in Complex with Inhibitor GRL-075-24A
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-04-22
Authors: Bhandari, D., Kovalevsky, A., Ghosh, A.K.
PDB entry 9obj: Room temperature structure of carbonic anhydrase II in complex with vorinostat (drug soak)
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-04-22
Authors: Gulkis, M.C., McKenna, R., Fisher, S.Z.
PDB entry 9obm: Solution structure or pre-miR-20a
Classification: RNA
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-04-22
Authors: Keane, S.C.
PDB entry 9obn: Crystal structure of malaria transmission-blocking antigen Pfs48/45 C-terminal domain in complex with nanobody B2
Classification: PROTEIN BINDING
Source organism: Plasmodium falciparum 3D7; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-04-22
Authors: Lyons, F.M.T., Dietrich, M.H., Tham, W.H.
PDB entry 9obo: Crystal structure of Mycobacterium tuberculosis isocitrate lyase 2 fixed in the apo form with disulfide bonds
Classification: LYASE
Source organism: Mycobacterium tuberculosis CDC1551
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-04-22
Authors: Huang, E.Y.W., Leung, I.K.H., Maher, M.J.
PDB entry 9obp: Cryo-EM structure of alpha-synuclein filaments derived from the frontal cortex of the case of atypical multiple system atrophy
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-04-23
Authors: Enomoto, M., Martinez-Valbuena, I., Forrest, S.L., Xu, X., Munhoz, R., Li, J., Rogaeva, E., Lang, A.E., Kovacs, G.G.
PDB entry 9oc3: Transcription factor DeltaFOSB/JUND bZIP domain in complex with an effector molecule
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-04-23
Authors: Machius, M., Kumar, A., Rudenko, G.
PDB entry 9oc4: High-resolution cryo-EM structure of KdpFABC in the E1P-ADP state in lipid nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-04-23
Authors: Hussein, A.K., Zhang, X., Pedersen, B.P., Stokes, D.L.
PDB entry 9oc6: Crystal structure of receptor FcRn bound to Human Astrovirus 6 spike
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human astrovirus 6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.97 Å
Deposited: 2025-04-23
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9oc7: Crystal structure of FcRn in complex with Human Astrovirus 2 spike
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human astrovirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2025-04-23
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9ocb: Sf11 capsid Icosahedral Reconstruction
Classification: VIRUS
Source organism: Shigella phage Sf11 SMD-2017
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-04-24
Authors: Subramanian, S., Parent, K.N.
PDB entry 9occ: Sf11 bacteriophage tail
Classification: VIRUS
Source organism: Shigella phage Sf11 SMD-2017
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-04-24
Authors: Subramanian, S., Parent, K.N.
PDB entry 9oce: 2.48A cryo-EM structure of the Measles Virus L-P-C in complex with ERdRp-0519
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Measles virus strain Edmonston-B
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-04-24
Authors: Liu, B., Wang, D., Yang, G.
PDB entry 9ocf: 2.73A cryo-EM structure of the Measles Virus L-P in complex with ERdRp-0519
Classification: VIRAL PROTEIN, TRANSFERASE
Source organism: Measles virus strain Edmonston-B
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2025-04-24
Authors: Liu, B., Wang, D., Yang, G.
PDB entry 9ocg: Transporter associated with antigen processing (TAP) bound to the viral protein BNLF2a in the inward-facing state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; human gammaherpesvirus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-04-24
Authors: Lee, J., Manon, V., Chen, J.
PDB entry 9och: Transporter associated with antigen processing (TAP) bound to the viral protein hUS6 in the outward-facing open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-04-24
Authors: Lee, J., Manon, V., Chen, J.
PDB entry 9oci: Transporter associated with antigen processing (TAP) bound to the viral protein rhUS6 in the outward-facing open state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; macacine betaherpesvirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-04-24
Authors: Lee, J., Manon, V., Chen, J.
PDB entry 9ocj: Transporter associated with antigen processing (TAP) bound to the viral protein CPXV012 in the outward-facing open state
Classification: MEMBRANE PROTEIN
Source organism: Cowpox virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-04-24
Authors: Lee, J., Manon, V., Chen, J.
PDB entry 9ock: Co-Structure of Main Protease of SARS-CoV-2 with Compound 1
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-24
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9ocl: PV2-10D2 Complex
Classification: VIRUS
Source organism: Homo sapiens; Poliovirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-04-24
Authors: Waddey, B.T., Hafenstein, S.L.
PDB entry 9oco: SIPV3-2E1 Complex
Classification: VIRUS
Source organism: Homo sapiens; Poliovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-04-24
Authors: Waddey, B.T., Hafenstein, S.L.
PDB entry 9ocw: A constitutively active construct of eukaryotic elongation factor 2 kinase
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2025-04-25
Authors: Piserchio, A., Long, K., Isiorho, E.A., Dalby, K., Ghose, R.
PDB entry 9od2: Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.09 Å
Deposited: 2025-04-25
Authors: Galkin, A., Pozharski, E.
PDB entry 9od3: SIPV3-6B5 Complex
Classification: VIRUS
Source organism: Homo sapiens; Poliovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-04-25
Authors: Waddey, B.T., Hafenstein, S.L.
PDB entry 9od4: Solution structure of the Ebola Transcriptional Regulatory Signal - configuration B
Classification: RNA
Source organism: Ebola virus
Experimental method: SOLUTION NMR
Deposited: 2025-04-25
Authors: Edwards, J.M., Kachale, A., Pham, V.V.
PDB entry 9od5: Solution structure of the Ebola Transcriptional Regulatory Signal - configuration A
Classification: RNA
Source organism: Ebola virus
Experimental method: SOLUTION NMR
Deposited: 2025-04-25
Authors: Edwards, J.M., Kachale, A., Pham, V.V.
PDB entry 9od6: Crystal structure of nucleoside-diphosphate kinase from Cryptosporidium parvum in complex with citrate
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-04-25
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9od7: Structure of disulfide-stabilized IL-18 variant
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-25
Authors: Sun, D., Masureel, M., Bainbridge, T., Bulutoglu, B.
PDB entry 9od9: Structure of disulfide-stabilized IL-18 variant
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-25
Authors: Sun, D., Masureel, M., Bainbridge, T., Bulutoglu, B.
PDB entry 9odb: Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-04-26
Authors: Ozorowski, G., Alkutkar, T., Ward, A.B.
PDB entry 9ode: Structure of the MOR/Gi/Lofentanil Complex, Nucleotide Free
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odf: Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-Primed
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odg: Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odh: Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2, G Protein Local
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odi: Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2', G Protein Local
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odj: Structure of the MOR/Gi/Mitragynine Pseudoindoxil Complex, GTP-bound G-Primed, AHD 3DVA Sorted
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odk: Structure of the MOR/Gi/Mitragynine Pseudoindoxil Complex, GTP-bound G-ACT-2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odl: Structure of the MOR/Gi/Mitragynine Pseudoindoxil Complex, GTP-bound G-ACT-3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odm: Structure of the MOR/Gi/DAMGO Complex, Nucleotide Free, Baseline
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odn: Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-Primed
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odo: Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-ACT-2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odp: Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-ACT-3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-04-27
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9odr: Structure of CRBN TBD bound to compound C1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2025-04-27
Authors: Strickland, C., Rice, C.
PDB entry 9ods: Structure of CRBN TBD bound to compound C3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2025-04-27
Authors: Strickland, C., Rice, C.
PDB entry 9odt: The structure of a Bacterial Cyanide Dihydratase from Bacillus safensis PER-URP-08
Classification: HYDROLASE
Source organism: Bacillus safensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2025-04-27
Authors: Justo Arevalo, S., Valle-Riestra F, V., Balan, A., Chuck, C.S.
PDB entry 9odu: Yeast V-ATPase bound to Rtc5p, rotary state 2
Classification: PROTON TRANSPORT
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-04-27
Authors: Wilkens, S., Khan, M.M.
PDB entry 9odv: MicroED structure of proteinase K without energy filtering
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.3 Å
Deposited: 2025-04-28
Authors: Clabbers, M.T.B., Gonen, T.
PDB entry 9odw: MicroED structure of proteinase K with energy filtering
Classification: HYDROLASE
Source organism: Parengyodontium album
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 1.3 Å
Deposited: 2025-04-28
Authors: Clabbers, M.T.B., Gonen, T.
PDB entry 9odx: Structure of Unc119B in complex with N-acetyl-S-geranylgeranyl-L-Cysteine
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-04-28
Authors: Srivastava, D., Sebag, J.A., Artemyev, N.O.
PDB entry 9oea: SIPV1-5E12 Complex
Classification: VIRUS
Source organism: Homo sapiens; Human poliovirus 1 strain Sabin
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-04-28
Authors: Waddey, B.T., Hafenstein, S.L.
PDB entry 9oed: Ab1999 in complex with HIV-1 Env RC1
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2025-04-28
Authors: Lin, Z.J., Cui, J., Du, J., Relano-Rodriguez, I., Escolano, A., Pallesen, J.
PDB entry 9oee: S. griseus TUA bound UmbA4 complexes
Classification: TOXIN
Source organism: Streptomyces coelicolor
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-04-28
Authors: Park, Y.J., Zhao, Q., Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio, F., Mougous, J.D., Veesler, D.
PDB entry 9oer: HalA with lysine, Fe(II), chloride, and a peroxyhemiketal intermediate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2025-04-29
Authors: Kissman, E.N., Yang, A.Y., Chang, M.C.Y.
PDB entry 9oes: HalA with lysine, succinate, chloride, and vanadium(IV)-oxo at pH 4.2
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-04-29
Authors: Kissman, E.N., Chang, M.C.Y.
PDB entry 9oet: Hydrox with succinate and vanadium(IV)-oxo
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces roseifaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-29
Authors: Kissman, E.N., Yang, A.Y., Whitten, A.M., Chang, M.C.Y.
PDB entry 9oeu: HalA with lysine, succinate, chloride, and vanadium(IV)-oxo at pH 7
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2025-04-29
Authors: Kissman, E.N., Stone, E.A., Chang, M.C.Y.
PDB entry 9oev: HalA I151N with lysine, succinate, chloride, and vanadium(IV)-oxo
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2025-04-29
Authors: Kissman, E.N., Chang, M.C.Y.
PDB entry 9oew: HalA N224V with lysine, succinate, chloride, and vanadium(IV)-oxo
Classification: BIOSYNTHETIC PROTEIN
Source organism: Actinoplanes teichomyceticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-04-29
Authors: Kissman, E.N., Stone, E.A., Chang, M.C.Y.
PDB entry 9of0: Cryo-EM Structure of Human HIF-2a-ARNT Complexed on 20-bp HRE
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-04-29
Authors: Xu, X., Closson, J.D., Zhang, M., Gardner, K.H.
PDB entry 9of1: CryoEM structure of Cad1 in Apo form, symmetry expanded dimer, refined against a composite map
Classification: IMMUNE SYSTEM, HYDROLASE
Source organism: Thermoanaerobaculum aquaticum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-04-29
Authors: Zhao, Y., Li, H.
PDB entry 9of2: Dimer of HIF-2a-ARNT Heterodimers Complexed on 51-bp HRE/HAS
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-04-29
Authors: Closson, J.D., Xu, X., Gardner, K.H.
PDB entry 9of3: Structure of the Acinetobacter baumannii Response Regulator PmrA Receiver Domain D10N mutation
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2025-04-29
Authors: Jaimes, F.E., Milton, M.E., Hondros, A.D., Kinkead, J., Cavanagh, J.
PDB entry 9of4: Structure of the Acinetobacter baumannii Response Regulator PmrA Receiver Domain M12I Mutation
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-04-29
Authors: Jaimes, F.E., Milton, M.E., Hondros, A.D., Cavanagh, J.
PDB entry 9of5: Structure of the Acinetobacter baumannii Response Regulator PmrA Receiver Domain I13M Mutation
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-04-29
Authors: Jaimes, F.E., Milton, M.E., Cavanagh, J.
PDB entry 9of6: Structure of the Acinetobacter baumannii Response Regulator PmrA Receiver Domain I13M Mutation in Active Dimer State
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2025-04-29
Authors: Milton, M.E., Jaimes, F.E., Cavanagh, J.
PDB entry 9of7: Structure of the Acinetobacter baumannii Response Regulator PmrA Receiver Domain G54E Mutation
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-04-29
Authors: Jaimes, F.E., Milton, M.E., Hondros, A.D., Cavanagh, J.
PDB entry 9of8: Structure of the Acinetobacter baumannii Response Regulator PmrA Receiver Domain S119T Mutation
Classification: TRANSCRIPTION
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2025-04-29
Authors: Jaimes, F.E., Milton, M.E., Cavanagh, J.
PDB entry 9ofa: The structure of a Fungal Cyanide Hydratase from Gloeocercospora sorghi
Classification: HYDROLASE
Source organism: Microdochium sorghi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å
Deposited: 2025-04-29
Authors: Justo Arevalo, S., Valle-Riestra F, V., Balan, A., Farah, C.S.
PDB entry 9ofb: CryoEM structure of Cad1 bound with cA4 and ATP, symmetry expanded dimer refined against a composite map
Classification: IMMUNE SYSTEM, HYDROLASE
Source organism: Thermoanaerobaculum aquaticum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-04-29
Authors: Zhao, Y., Li, H.
PDB entry 9ofc: CryoEM structure of Cad1 bound with cA4 and ATP, hexamer with three intact dimers
Classification: IMMUNE SYSTEM, HYDROLASE
Source organism: Thermoanaerobaculum aquaticum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-04-29
Authors: Zhao, Y., Li, H.
PDB entry 9ofd: CryoEM structure of Cad1 bound with cA4 and ATP, hexamer with one intact dimer
Classification: IMMUNE SYSTEM, HYDROLASE
Source organism: Thermoanaerobaculum aquaticum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-04-29
Authors: Zhao, Y., Li, H.
PDB entry 9ofe: CryoEM structure of Cad1 bound with cA4 and ATP, hexamer with two intact dimers
Classification: IMMUNE SYSTEM, HYDROLASE
Source organism: Thermoanaerobaculum aquaticum; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-04-29
Authors: Zhao, Y., Li, H.
PDB entry 9ofg: CI ring of daytime state KaiC
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Synechococcus elongatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2025-04-29
Authors: Dzimianski, J.V., Sandate, C.R., Balasco Serrao, V.H., Lander, G.C., Partch, C.L.
PDB entry 9ofh: Extended conformation of dusk state KaiC
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Synechococcus elongatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-04-29
Authors: Dzimianski, J.V., Crosby, P., Balasco Serrao, V.H., Partch, C.L.
PDB entry 9ofj: CI ring of dusk state KaiC
Classification: CIRCADIAN CLOCK PROTEIN
Source organism: Synechococcus elongatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-04-29
Authors: Dzimianski, J.V., Crosby, P., Balasco Serrao, V.H., Partch, C.L.
PDB entry 9ofo: HCoV-229E S2P bound by three DH1533 Fabs
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus 229E
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-04-30
Authors: Wrapp, D.
PDB entry 9ofp: HCoV-229E S2P bound by two DH1533 Fabs
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus 229E
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-04-30
Authors: Wrapp, D.
PDB entry 9ofq: HCoV-229E S2P bound by one DH1533 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human coronavirus 229E
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-04-30
Authors: Wrapp, D.
PDB entry 9oft: Rotavirus NSP2 WT
Classification: VIRAL PROTEIN
Source organism: Rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2025-04-30
Authors: Hollis, T.J., Nichols, S.L., Esstman, S.M.
PDB entry 9ofu: Dimer of HIF-1a-ARNT Heterodimers Complexed on 52-bp HRE/HAS
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-04-30
Authors: Closson, J.D., Tiyani, T.T., Xu, X., Gardner, K.H.
PDB entry 9ofv: Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
Classification: STRUCTURAL PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-04-30
Authors: Li, W., Cahoon, T., Shen, P.S.
PDB entry 9ofx: Crystal structure of c-Src SH3 domain in H32 space group mediated by nickel
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-04-30
Authors: Stiegler, A.L., Calicdan, X., Ha, B.H., Fisher, O.S., Boggon, T.J.
PDB entry 9og0: Cryo-EM structure of OS9-SEL1L-HRD1 dimer
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2025-04-30
Authors: Lin, L., Maldosevic, E., Jomaa, A., Qi, L.
PDB entry 9og1: Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Monkeypox virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-04-30
Authors: Rundlet, E.J., Zhou, L., McLellan, J.S.
PDB entry 9og2: Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Monkeypox virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-04-30
Authors: Zhou, L., Rundlet, E.J., McLellan, J.S.
PDB entry 9og3: Crystal structure of WRN in complex with compound 4
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-04-30
Authors: Pemberton, O.A., Tong, Y., Nocek, B., Tang, H.Y.H.
PDB entry 9og4: SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex closed conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2025-04-30
Authors: Chandravanshi, M., Niu, L., Tolbert, W.D., Pazgier, M.
PDB entry 9og5: SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex 1 RBD up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-04-30
Authors: Chandravanshi, M., Niu, L., Tolbert, W.D., Pazgier, M.
PDB entry 9og6: Apo SARS-COV-2-6P-MUT7 S PROTEIN closed conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-04-30
Authors: Niu, L., Chandravanshi, M., Tolbert, W.D., Pazgier, M.
PDB entry 9og7: APO SARS-COV-2-6P-MUT7 S PROTEIN 1 RBD UP CONFORMATION
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-04-30
Authors: Niu, L., Chandravanshi, M., Tolbert, W.D., Pazgier, M.
PDB entry 9og8: Crystal structure of WRN in complex with compound 43
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2025-04-30
Authors: Pemberton, O.A., Tong, Y., Nocek, B., Tang, H.Y.H.
PDB entry 9og9: Cryo-EM structure of human full-length XPO1 (unliganded)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-04-30
Authors: Wing, C.E., Fung, H.Y.J., Chook, Y.M.
PDB entry 9oga: Cryo-EM structure of human full-length XPO1 conjugated with selinexor
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-04-30
Authors: Wing, C.E., Fung, H.Y.J., Chook, Y.M.
PDB entry 9ogb: Cryo-EM structure of human exportin-1 conjugated with selinexor and bound to yeast RAN-GTP and human ASB8-ELOB/C
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-04-30
Authors: Wing, C.E., Fung, H.Y.J., Chook, Y.M.
PDB entry 9ogc: Cryo-EM structure of human exportin-1 conjugated with KPT-185 and bound to human ASB8-ELOB/C
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-04-30
Authors: Wing, C.E., Fung, H.Y.J., Chook, Y.M.
PDB entry 9ogd: Cryo-EM structure of human exportin-1 conjugated with selinexor and bound to human ASB8(R197A)-ELOB/C
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-04-30
Authors: Wing, C.E., Fung, H.Y.J., Chook, Y.M.
PDB entry 9oge: Cryo-EM structure of human exportin-1 conjugated with KPT-127 and bound to human ASB8-ELOB/C
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-04-30
Authors: Wing, C.E., Fung, H.Y.J., Chook, Y.M.
PDB entry 9ogf: Cryo-EM structure of human exportin-1 conjugated with KPT-UTSW1 and bound to human ASB8-ELOB/C
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.21 Å
Deposited: 2025-04-30
Authors: Wing, C.E., Fung, H.Y.J., Chook, Y.M.
PDB entry 9ogh: Human P2X2 apo structure in lipid nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-04-30
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9ogk: Refinement of PDB-3J5R against EMD-8117 using EMAN2
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-04-30
Authors: Chen, M.
PDB entry 9ogl: BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-04-30
Authors: Ozorowski, G., Phulera, S., Ward, A.B.
PDB entry 9ogm: BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (1x 10E8 Fab)
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-05-01
Authors: Rantalainen, K., Ozorowski, G., Gharpure, A., Ward, A.B.
PDB entry 9ogn: Crystal Structure of KPT396 in complex with CRM1-Ran-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.414 Å
Deposited: 2025-05-01
Authors: Fung, H.Y.J., Chook, Y.M.
PDB entry 9ogo: Crystal Structure of KPT185 in complex with CRM1(EH mutant)-Ran-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-05-01
Authors: Fung, H.Y.J., Chook, Y.M.
PDB entry 9ogq: Rotavirus NSP2 K294E mutant
Classification: VIRAL PROTEIN
Source organism: Rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-05-01
Authors: Hollis, T.J., Nichols, S.L., Esstman, S.M.
PDB entry 9ogr: Cryo-EM analysis of human H2A.Z on methylated Sat2R-P DNA (v1)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-05-01
Authors: Shih, R.M., Arimura, Y.
PDB entry 9ogs: Cryo-EM analysis of human H2A.Z on Sat2R-P DNA (v1)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-05-01
Authors: Shih, R.M., Arimura, Y.
PDB entry 9ogt: HIV-1 Env BG505 SOSIP.664-His in complex with PGT122 and 3BNC117 Fabs
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-05-01
Authors: Andrade, T.G., Ozorowski, G., Ward, A.B.
PDB entry 9ogu: HIV-1 Env BG505 SOSIP.664-dPG-His in complex with PGT122 and 3BNC117 Fabs
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-05-01
Authors: Andrade, T.G., Ozorowski, G., Ward, A.B.
PDB entry 9ogv: Identification of ligands for E3 ligases using fragment-based methods
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-05-02
Authors: Phan, J., Fesik, S.W.
PDB entry 9ogw: Identification of ligands for E3 ligases using fragment-based methods
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-05-02
Authors: Phan, J., Fesik, S.W.
PDB entry 9ogx: Structure of full-length Streptococcus mutans GtfD active site mutant (D465A, D584A) in complex with sucrose
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-05-02
Authors: Schormann, N., Deivanayagam, C.
PDB entry 9ogy: Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
Classification: RNA
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-05-02
Authors: Sherlock, M.E., Kieft, J.S.
PDB entry 9ogz: Cryo-EM analysis of human H2A.Z on Sat2R-P DNA (v2)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-05-02
Authors: Shih, R.M., Arimura, Y.
PDB entry 9oh0: Cryo-EM analysis of human H2A.Z on methylated Sat2R-P DNA (v2)
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-05-02
Authors: Shih, R.M., Arimura, Y.
PDB entry 9oh1: Cryo-EM analysis of human H2A.Z on 601L DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-05-02
Authors: Shih, R.M., Arimura, Y.
PDB entry 9oh2: Cryo-EM analysis of human H2A.Z on methylated 601L DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-05-02
Authors: Shih, R.M., Arimura, Y.
PDB entry 9oh5: Cryo-EM structure of the assembled MS2 CPM58 VLP
Classification: VIRUS LIKE PARTICLE
Source organism: Escherichia phage MS2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-05-02
Authors: Liang, S., Jung, J., Tullman-Ercek, D.
PDB entry 9oh6: H117A/M121H Azurin with Cu(II), pH 7.7
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-05-02
Authors: Van Stappen, C., Lu, Y.
PDB entry 9oh7: M13F/H117A/M121H Azurin with Cu(II), pH 7.4
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-05-02
Authors: Van Stappen, C., Lu, Y.
PDB entry 9oh9: Human Stomatin Complex in Native Membrane Vesicles
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-05-03
Authors: Stoner, J., Fu, Z.
PDB entry 9ohc: CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with taurochenodeoxycholic acid (TCDCA)
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-05-04
Authors: Miletic, S., Li, Z., Melnyk, R.A.
PDB entry 9ohd: CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with methyl cholate
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-05-04
Authors: Miletic, S., Li, Z., Melnyk, R.A.
PDB entry 9ohe: CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the closed CROP state
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2025-05-04
Authors: Miletic, S., Li, Z., Melnyk, R.A.
PDB entry 9ohf: CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the open CROP state
Classification: TOXIN
Source organism: Clostridioides difficile
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-05-04
Authors: Miletic, S., Li, Z., Melnyk, R.A.
PDB entry 9ohk: Human P2X2 receptor channel in lipid nanodiscs with 0.5mM Suramin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-05-05
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9ohl: TRMT112-METTL5 bound to SAM and FWG-33B
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.286 Å
Deposited: 2025-05-05
Authors: Goetzke, F.W., Bernard, S.M.
PDB entry 9ohq: Structure of CRBN:IKZF2:Compound 15
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-05-05
Authors: Strickland, C.O., Rice, C.T.
PDB entry 9ohr: Structure of CRBN:IKZF2:Compound 35
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2025-05-05
Authors: Strickland, C.O., Rice, C.T.
PDB entry 9ohs: Crystal structure of human FTO in complex with Ga(III) and ascorbate
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.072 Å
Deposited: 2025-05-05
Authors: Calzini, L.O., Mugridge, J.S.
PDB entry 9oht: CD1c presenting GD3 ganglioside
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2025-05-05
Authors: Cao, T.P., Rossjohn, J., Shahine, A.
PDB entry 9ohu: CD1c presenting GM3 ganglioside
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-05-05
Authors: Cao, T.P., Rossjohn, J., Shahine, A.
PDB entry 9ohv: CD1c presenting dual lipids MPM and GD3 ganglioside
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2025-05-05
Authors: Cao, T.P., Rossjohn, J., Shahine, A.
PDB entry 9ohw: CD1c presenting GM1 ganglioside
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-05-05
Authors: Cao, T.P., Rossjohn, J., Shahine, A.
PDB entry 9ohx: CD1c presenting endogenous lipids
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-05-05
Authors: Liao, G., Cao, T.P., Rossjohn, J., Shahine, A.
PDB entry 9ohy: CD1c presenting phosphomycoketide in its open conformation
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-05-05
Authors: Cao, T.P., Rossjohn, J., Shahine, A.
PDB entry 9ohz: Crystal structure of CD1a presenting ganglioside GD3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-05-05
Authors: Cao, T.P., Ciacchi, L., Rossjohn, J., Shahine, A.
PDB entry 9oi0: Crystal structure of CD1b presenting ganglioside GD3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-05-05
Authors: Chen, Y., Cao, T.P., Farquhar, R., Rossjohn, J., Shahine, A.
PDB entry 9oi2: Structure of human Fab 245 in complex with influenza H1N1 A/Solomon Island/3/2006 hemagglutinin
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-05-06
Authors: Wu, N.C., Pholcharee, T., Lv, H.
PDB entry 9oi3: Structure of human Fab 604 in complex with influenza H1N1 A/Solomon Island/3/2006 hemagglutinin
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2025-05-06
Authors: Wu, N.C., Pholcharee, T., Lv, H.
PDB entry 9oi8: Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex (Alternative Conformation)
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-05-06
Authors: Dahal, P., Sharma, K., Borgnia, M., Zhou, P.
PDB entry 9oic: Structure of shaker-IR-I384R
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2025-05-06
Authors: Liu, Y., Contreras, G.F.
PDB entry 9oih: Structure of full-length Streptococcus mutans GtfD active site mutant (D465A, D584A) with active site glucose
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2025-05-06
Authors: Schormann, N., Deivanayagam, C.
PDB entry 9oij: Structure of S. Typhimurium 14028 Gifsy-1 prophage HepS
Classification: ANTIVIRAL PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-05-06
Authors: Sargen, M.R., Antine, S.P., Grabe, G.J., Antonellis, G., Ragucci, A.E., Kranzusch, P.J., Helaine, S.A.
PDB entry 9oik: Structure of S. Typhimurium 14028 Gifsy-1 prophage HepS bound to bacteriophage lambda J Tail Tip
Classification: VIRAL PROTEIN
Source organism: Escherichia phage Lambda; Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028
Experimental method: X-RAY DIFFRACTION
Resolution: 1.857 Å
Deposited: 2025-05-06
Authors: Sargen, M.R., Antine, S.P., Grabe, G.J., Antonellis, G., Ragucci, A.E., Kranzusch, P.J., Helaine, S.A.
PDB entry 9oil: Solution Structure of the Broadspectrum Bacteriocin Garvicin Q
Classification: ANTIBIOTIC
Source organism: Lactococcus garvieae
Experimental method: SOLUTION NMR
Deposited: 2025-05-06
Authors: Mallett, T.M., Lamer, T., Aleksandrzak-Piekarczyk, T., Mckay, R.T., Sit, C.S., Rainey, J.K., Van Belkum, M., Vederas, J.C.
PDB entry 9oim: The von Hippel Lindau-ElonginB-ElonginC (VCB) complex with fragment 9
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2025-05-06
Authors: Amporndanai, K., Katinas, J.M., Chopra, A., Fesik, S.W.
PDB entry 9oin: The von Hippel Lindau-ElonginB-ElonginC (VCB) complex with fragment 13
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2025-05-06
Authors: Amporndanai, K., Katinas, J.M., Chopra, A., Fesik, S.W.
PDB entry 9oio: The von Hippel Lindau-ElonginB-ElonginC (VCB) complex with fragments 9 and 14
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-05-06
Authors: Amporndanai, K., Katinas, J.M., Chopra, A., Fesik, S.W.
PDB entry 9oiq: The von Hippel Lindau-ElonginB-ElonginC (VCB) complex with fragment 15
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2025-05-06
Authors: Amporndanai, K., Katinas, J.M., Chopra, A., Fesik, S.W.
PDB entry 9oir: Human P2X2 receptor channel in detergent with residual ATP
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-05-06
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9oiu: Soltion Structure of His6-Small Ubiquitin-like Modifier (His6-SUMO)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Lactococcus garvieae
Experimental method: SOLUTION NMR
Deposited: 2025-05-06
Authors: Mallett, T.M., Lamer, T.D., Vederas, J.C.
PDB entry 9oix: Co-Structure of Main Protease of SARS-CoV-2 with NVP-EGT710
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-05-06
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9oiz: Co-Structure of Main Protease of SARS-CoV-2 with Compound 11
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2025-05-06
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9oj3: Crystal structure of the SpyTag003-SpyCatcher003 complex
Classification: PEPTIDE BINDING PROTEIN
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-05-06
Authors: Ralston, C.Y.
PDB entry 9ojd: Crystal structure of E. coli diadenosine tetraphosphate hydrolase (ApaH)
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-05-07
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 9ojg: Co-Structure of Main Protease of SARS-CoV-2 with Compound 2
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2025-05-07
Authors: Knapp, M.S., Ornelas, E.
PDB entry 9ojh: Structure of full-length Streptococcus mutans GtfD with inhibitor maltose in active site
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-05-07
Authors: Schormann, N., Deivanayagam, C.
PDB entry 9oji: Structure of Streptococcus mutans GtfD with C-terminally truncated domain V in complex with acarbose
Classification: TRANSFERASE
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2025-05-07
Authors: Schormann, N., Deivanayagam, C.
PDB entry 9ojk: The open state structure of human P2X2 receptor channel in lipid nanodiscs with free ATP and sodium
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-05-07
Authors: Dhingra, S., Swartz, K.J.
PDB entry 9ojl: Crystal Structure of GH18 Chitinase Domain from Vibrio splendidus
Classification: HYDROLASE
Source organism: Vibrio splendidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-05-08
Authors: Horton, J.G., Jackson, C.J., Frkic, R.L.