LiteFold/PDB huggingface dataset:
PDB entry 5ayw: Structure of a membrane complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.555 Å
Deposited: 2015-09-14
Authors: Huang, Y., Han, L., Zheng, J.
PDB entry 5ayx: Crystal structure of Human Quinolinate Phosphoribosyltransferase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-09-14
Authors: Kang, G.B., Kim, M.-K., Im, Y.J., Lee, J.H., Youn, H.-S., An, J.Y., Lee, J.-G., Fukuoka, S.-I., Eom, S.H.
PDB entry 5ayy: CRYSTAL STRUCTURE OF HUMAN QUINOLINATE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH THE REACTANT QUINOLINATE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2015-09-14
Authors: Youn, H.S., Kim, T.G., Kim, M.K., Kang, G.B., Kang, J.Y., Seo, Y.J., Lee, J.G., An, J.Y., Park, K.R., Lee, Y., Im, Y.J., Lee, J.H., Fukuoka, S.I., Eom, S.H.
PDB entry 5ayz: CRYSTAL STRUCTURE OF HUMAN QUINOLINATE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH THE PRODUCT NICOTINATE MONONUCLEOTIDE
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-09-14
Authors: Youn, H.S., Kim, T.G., Kim, M.K., Kang, G.B., Kang, J.Y., Seo, Y.J., Lee, J.G., An, J.Y., Park, K.R., Lee, Y., Im, Y.J., Lee, J.H., Fukuoka, S.I., Eom, S.H.
PDB entry 5az0: Crystal structure of aldo-keto reductase (AKR2E5) of the silkworm, Bombyx mori
Classification: OXIDOREDUCTASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-09-15
Authors: Yamamoto, K., Higashiura, A., Suzuki, M., Nakagawa, A.
PDB entry 5az1: Crystal structure of aldo-keto reductase (AKR2E5) complexed with NADPH
Classification: OXIDOREDUCTASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-09-15
Authors: Yamamoto, K., Higashiura, A., Suzuki, M., Nakagawa, A.
PDB entry 5az2: Crystal structure of the Fab fragment of 9E5, a murine monoclonal antibody specific for human epiregulin
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.603 Å
Deposited: 2015-09-16
Authors: Kado, Y., Mizohata, E., Nagatoishi, S., Iijima, M., Shinoda, K., Miyafusa, T., Nakayama, T., Yoshizumi, T., Sugiyama, A., Kawamura, T., Lee, Y.H., Matsumura, H., Doi, H., Fujitani, H., Kodama, T., Shibasaki, Y., Tsumoto, K., Inoue, T.
PDB entry 5az3: Crystal structure of heme binding protein HmuT
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium glutamicum ATCC 13032
Experimental method: X-RAY DIFFRACTION
Resolution: 1.423 Å
Deposited: 2015-09-18
Authors: Muraki, N., Aono, S.
PDB entry 5az4: Crystal structure of a 79KDa fragment of FlgE, the hook protein from Campylobacter jejuni
Classification: MOTOR PROTEIN
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2015-09-25
Authors: Samatey, F.A., Kido, Y.
PDB entry 5az5: Crystal structure of human TLR8 in complex with MB-343
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-09-27
Authors: Tanji, H., Ohto, U., Shimizu, T.
PDB entry 5az6: Crystal structure of MBP-Tom20 fusion protein with a 2-residue spacer in the connector helix
Classification: SUGAR BINDING PROTEIN, PEPTIDE BINDING PROTEIN
Source organism: Escherichia coli (strain K12); Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2015-09-27
Authors: Matsuoka, R., Kohda, D.
PDB entry 5az7: Crystal structure of MBP-Tom20 fusion protein with a 4-residue spacer in the connector helix
Classification: SUGAR BINDING PROTEIN, PEPTIDE BINDING PROTEIN
Source organism: Escherichia coli (strain K12); Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2015-09-27
Authors: Matsuoka, R., Kohda, D.
PDB entry 5az8: Crystal structure of MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
Classification: SUGAR BINDING PROTEIN, PEPTIDE BINDING PROTEIN
Source organism: Escherichia coli (strain K12); Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-09-27
Authors: Matsuoka, R., Kohda, D.
PDB entry 5az9: Crystal structure of (5-residue deleted)MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
Classification: SUGAR BINDING PROTEIN, PEPTIDE BINDING PROTEIN
Source organism: Escherichia coli (strain K12); Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2015-09-27
Authors: Matsuoka, R., Kohda, D.
PDB entry 5aza: Crystal structure of MBP-sAglB fusion protein with a 20-residue spacer in the connector helix
Classification: SUGAR BINDING PROTEIN, TRANSFERASE
Source organism: Escherichia coli; Pyrococcus furiosus COM1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2015-09-27
Authors: Matsuoka, R., Kohda, D.
PDB entry 5azb: Crystal structure of Escherichia coli Lgt in complex with phosphatidylglycerol and the inhibitor palmitic acid
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-09-30
Authors: Zhang, X.C., Mao, G., Zhao, Y.
PDB entry 5azc: Crystal structure of Escherichia coli Lgt in complex with phosphatidylglycerol
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.902 Å
Deposited: 2015-09-30
Authors: Zhang, X.C., Mao, G., Zhao, Y.
PDB entry 5azd: Crystal structure of thermophilic rhodopsin.
Classification: TRANSPORT PROTEIN
Source organism: Thermus thermophilus JL-18
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-09-30
Authors: Mizutani, K., Hashimoto, N., Tsukamoto, T., Yamashita, K., Yamamoto, M., Sudo, Y., Murata, T.
PDB entry 5aze: Fab fragment of calcium-dependent antigen binding antibody, 6RL#9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-10-02
Authors: Kadono, S., Hironiwa, N., Ishii, S., Igawa, T., Hattori, K.
PDB entry 5azf: Crystal structure of LGG-1 complexed with a WEEL peptide
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-10-05
Authors: Watanabe, Y., Noda, N.N.
PDB entry 5azg: Crystal structure of LGG-1 complexed with a UNC-51 peptide
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2015-10-05
Authors: Watanabe, Y., Fujioka, Y., Noda, N.N.
PDB entry 5azh: Crystal structure of LGG-2 fused with an EEEWEEL peptide
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-10-05
Authors: Watanabe, Y., Fujioka, Y., Noda, N.N.
PDB entry 5azi: Crystal structure of glycerol kinase from Trypanosoma brucei gambiense complexed with 4NP
Classification: TRANSFERASE
Source organism: Trypanosoma brucei gambiense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2015-10-08
Authors: Balogun, E.O., Inaoka, D.K., Shiba, T., Tokuoka, S.M., Tokumasu, F., Sakamoto, K., Michels, P.A.M., Harada, S., Kita, K.
PDB entry 5azj: Crystal structure of glycerol kinase from Trypanosoma brucei gambiense complexed with 4NP (with disulfide bridge)
Classification: TRANSFERASE
Source organism: Trypanosoma brucei gambiense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2015-10-08
Authors: Balogun, E.O., Inaoka, D.K., Shiba, T., Tokuoka, S.M., Tokumasu, F., Sakamoto, K., Michels, P.A.M., Harada, S., Kita, K.
PDB entry 5azo: Crystal structure of a membrane protein from Pseudomonas aeruginosa
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-10-21
Authors: Yonehara, R., Yamashita, E., Nakagawa, A.
PDB entry 5azp: Crystal structure of a membrane protein from Pseudomonas aeruginosa
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2015-10-21
Authors: Yonehara, R., Yamashita, E., Nakagawa, A.
PDB entry 5azq: Crystal structure of cyano-cobalt(III) tetradehydrocorrin in the heme pocket of horse heart myoglobin
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-10-21
Authors: Mizohata, E., Morita, Y., Oohora, K., Inoue, T., Hayashi, T.
PDB entry 5azr: Crystal structure of aqua-cobalt(III) tetradehydrocorrin in the heme pocket of horse heart myoglobin
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2015-10-21
Authors: Mizohata, E., Morita, Y., Oohora, K., Inoue, T., Hayashi, T.
PDB entry 5azs: Crystal structure of a membrane protein from Pseudomonas aeruginosa
Classification: MEMBRANE PROTEIN
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2015-10-21
Authors: Yonehara, R., Yamashita, E., Nakagawa, A.
PDB entry 5azt: Ternary complex of hPPARalpha ligand binding domain, 17-oxoDHA and a SRC1 peptide
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2015-10-23
Authors: Egawa, D., Itoh, T., Yamamoto, K.
PDB entry 5azu: CRYSTAL STRUCTURE ANALYSIS OF OXIDIZED PSEUDOMONAS AERUGINOSA AZURIN AT PH 5.5 AND PH 9.0. A PH-INDUCED CONFORMATIONAL TRANSITION INVOLVES A PEPTIDE BOND FLIP
Classification: ELECTRON TRANSPORT(COPPER BINDING)
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1993-06-23
Authors: Nar, H., Messerschmidt, A., Huber, R.
PDB entry 5azv: Crystal structure of hPPARgamma ligand binding domain complexed with 17-oxoDHA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2015-10-23
Authors: Egawa, D., Itoh, T., Yamamoto, K.
PDB entry 5azw: Crystal structure of p24beta1 GOLD domain
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-10-23
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5azx: Crystal structure of p24delta1 GOLD domain (native 1)
Classification: PROTEIN TRANSPORT
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2015-10-23
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5azy: Crystal structure of p24delta1 GOLD domain (Native 2)
Classification: PROTEIN TRANSPORT
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-10-23
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5azz: Crystal structure of seleno-insulin
Classification: HORMONE
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2015-10-23
Authors: Watanabe, S., Okumura, M., Arai, K., Takei, T., Asahina, Y., Hojo, H., Iwaoka, M., Inaba, K.
PDB entry 5b00: Structure of the prenyltransferase MoeN5 in complex with geranyl pyrophosphate
Classification: TRANSFERASE
Source organism: Streptomyces ghanaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2015-10-27
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T.
PDB entry 5b01: Structure of a prenyltransferase in its unbound form
Classification: TRANSFERASE
Source organism: Streptomyces ghanaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2015-10-27
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T.
PDB entry 5b02: Structure of the prenyltransferase MoeN5 with a fusion protein tag of Sso7d
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2015-10-27
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T., Oldfield, E.O.
PDB entry 5b03: Structure of MoeN5-Sso7d fusion protein in complex with geranyl pyrophosphate
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2015-10-27
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T., Oldfield, E.O.
PDB entry 5b04: Crystal structure of the eukaryotic translation initiation factor 2B from Schizosaccharomyces pombe
Classification: TRANSLATION
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.994 Å
Deposited: 2015-10-27
Authors: Kashiwagi, K., Ito, T., Yokoyama, S.
PDB entry 5b05: Lysozyme (control experiment)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-10-28
Authors: Kita, A., Morimoto, Y.
PDB entry 5b06: Lysozyme (denatured by NaOD and refolded)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-10-28
Authors: Kita, A., Morimoto, Y.
PDB entry 5b07: Lysozyme (denatured by DCl and refolded)
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-10-28
Authors: Kita, A., Morimoto, Y.
PDB entry 5b08: Polyketide cyclase OAC from Cannabis sativa
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.325 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b09: Polyketide cyclase OAC from Cannabis sativa bound with Olivetolic acid
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b0a: Polyketide cyclase OAC from Cannabis sativa, H5Q mutant
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b0b: Polyketide cyclase OAC from Cannabis sativa, I7F mutant
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.187 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b0c: Polyketide cyclase OAC from Cannabis sativa, Y27F mutant
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.602 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b0d: Polyketide cyclase OAC from Cannabis sativa, Y27W mutant
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b0e: Polyketide cyclase OAC from Cannabis sativa, V59M mutant
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.603 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b0f: Polyketide cyclase OAC from Cannabis sativa, Y72F mutant
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b0g: Polyketide cyclase OAC from Cannabis sativa, H78S mutant
Classification: LYASE
Source organism: Cannabis sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2015-10-28
Authors: Yang, X., Matsui, T., Mori, T., Abe, I., Morita, H.
PDB entry 5b0h: CRYSTAL STRUCTURE OF HUMAN LEUKOCYTE CELL-DERIVED CHEMOTAXIN 2
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2015-10-29
Authors: Zheng, H., Miyakawa, T., Sawano, Y., Tanokura, M.
PDB entry 5b0i: Structure of MoeN5-Sso7d fusion protein in complex with beta-octyl glucoside
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2015-10-30
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T., Oldfield, E.O.
PDB entry 5b0j: Structure of MoeN5-Sso7d fusion protein in complex with beta-undecyl maltoside
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2015-10-30
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T., Oldfield, E.O.
PDB entry 5b0k: Structure of MoeN5-Sso7d fusion protein in complex with beta-decyl maltoside
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2015-10-30
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T.
PDB entry 5b0l: Structure of MoeN5-Sso7d fusion protein in complex with beta-nonyl glucoside
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2015-11-02
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T., Oldfield, E.O.
PDB entry 5b0m: Structure of MoeN5-Sso7d fusion protein in complex with beta-dodecyl maltoside
Classification: TRANSFERASE, DNA BINDING PROTEIN
Source organism: Streptomyces ghanaensis; Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2015-11-02
Authors: Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T., Oldfield, E.O.
PDB entry 5b0n: Structure of Shigella effector LRR domain
Classification: LIGASE
Source organism: Shigella flexneri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-11-02
Authors: Takagi, K., Sasakawa, C., Kim, M., Mizushima, T.
PDB entry 5b0o: Structure of the FliH-FliI complex
Classification: HYDROLASE/MOTOR PROTEIN
Source organism: Salmonella typhimurium; Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-11-02
Authors: Imada, K., Uchida, Y., Kinoshita, M., Namba, K., Minamino, T.
PDB entry 5b0p: Beta-1,2-Mannobiose phosphorylase from Listeria innocua - glycerol complex
Classification: TRANSFERASE
Source organism: Listeria innocua Clip11262
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2015-11-02
Authors: Tsuda, T., Arakawa, T., Fushinobu, S.
PDB entry 5b0q: beta-1,2-Mannobiose phosphorylase from Listeria innocua - mannose complex
Classification: TRANSFERASE
Source organism: Listeria innocua Clip11262
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-11-02
Authors: Tsuda, T., Arakawa, T., Fushinobu, S.
PDB entry 5b0r: Beta-1,2-Mannobiose phosphorylase from Listeria innocua - beta-1,2-mannobiose complex
Classification: TRANSFERASE
Source organism: Listeria innocua Clip11262
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-11-02
Authors: Tsuda, T., Arakawa, T., Fushinobu, S.
PDB entry 5b0s: Beta-1,2-Mannobiose phosphorylase from Listeria innocua - beta-1,2-mannotriose complex
Classification: TRANSFERASE
Source organism: Listeria innocua Clip11262
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2015-11-02
Authors: Tsuda, T., Arakawa, T., Fushinobu, S.
PDB entry 5b0t: Structure of Shigella effector LRR domain
Classification: LIGASE
Source organism: Shigella flexneri
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2015-11-04
Authors: Takagi, K., Sasakawa, C., Kim, M., Mizushima, T.
PDB entry 5b0u: Crystal structure of the mutated 19 kDa protein of Oplophorus luciferase (nanoKAZ)
Classification: LUMINESCENT PROTEIN
Source organism: Oplophorus gracilirostris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2015-11-04
Authors: Tomabechi, Y., Ehara, H., Sekine, S.I., Shirouzu, M.
PDB entry 5b0v: Crystal Structure of Marburg virus VP40 Dimer
Classification: VIRAL PROTEIN
Source organism: Lake Victoria marburgvirus (strain Musoke-80)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2015-11-05
Authors: Oda, S., Bornholdt, Z.A., Abelson, D.M., Saphire, E.O.
PDB entry 5b0w: Crystal structure of the 11-cis isomer of pharaonis halorhodopsin in the absence of halide ions
Classification: MEMBRANE PROTEIN
Source organism: Natronomonas pharaonis DSM 2160
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2015-11-11
Authors: Kouyama, T., Chan, S.K.
PDB entry 5b0x: Crystal structure of the CK2a/benzoic acid derivative complex
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-11-13
Authors: Kinoshita, T., Nakanishi, I.
PDB entry 5b0y: Crystal structure of the nucleosome containing histone H3 with the crotonylated lysine 122
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.557 Å
Deposited: 2015-11-13
Authors: Suzuki, Y., Horikoshi, N., Kurumizaka, H.
PDB entry 5b0z: The crystal structure of the nucleosome containing H3.2, at 1.98 A resolution
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.987 Å
Deposited: 2015-11-14
Authors: Suzuki, Y., Horikoshi, N., Kato, D., Kurumizaka, H.
PDB entry 5b12: Crystal structure of the B-type halohydrin hydrogen-halide-lyase mutant F71W/Q125T/D199H from Corynebacterium sp. N-1074
Classification: LYASE
Source organism: Corynebacterium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.721 Å
Deposited: 2015-11-17
Authors: Watanabe, F., Yu, F., Ohtaki, A., Yamanaka, Y., Noguchi, K., Odaka, M., Yohda, M.
PDB entry 5b13: Crystal structure of phycoerythrin
Classification: PHOTOSYNTHESIS
Source organism: Palmaria palmata
Experimental method: X-RAY DIFFRACTION
Resolution: 2.094 Å
Deposited: 2015-11-18
Authors: Tanaka, Y., Gai, Z., Kishimura, H.
PDB entry 5b15: Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to Hydrolyzed Doripenem
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2015-11-23
Authors: Wachino, J., Arakawa, Y.
PDB entry 5b16: X-ray structure of DROSHA in complex with the C-terminal tail of DGCR8.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2015-11-23
Authors: Kwon, S.C., Nguyen, T.A., Choi, Y.G., Jo, M.H., Hohng, S., Kim, V.N., Woo, J.S.
PDB entry 5b18: Crystal Structure of a Darunavir Resistant HIV-1 Protease
Classification: HYDROLASE
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2015-11-30
Authors: Suzuki, K., Ode, H., Nakashima, M., Sugiura, W., Watanabe, N., Suzuki, A., Iwatani, Y.
PDB entry 5b19: Picrophilus torridus aspartate racemase
Classification: ISOMERASE
Source organism: Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.851 Å
Deposited: 2015-11-30
Authors: Aihara, T., Ito, T., Yamanaka, Y., Noguchi, K., Odaka, M., Sekine, M., Homma, H., Yohda, M.
PDB entry 5b1a: Bovine heart cytochrome c oxidase in the fully oxidized state at 1.5 angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2015-12-01
Authors: Yano, N., Muramoto, K., Shimada, A., Takemura, S., Baba, J., Fujisawa, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 5b1b: Bovine heart cytochrome c oxidase in the fully reduced state at 1.6 angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2015-12-01
Authors: Yano, N., Muramoto, K., Shimada, A., Takemura, S., Baba, J., Fujisawa, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Tsukihara, T., Yoshikawa, S.
PDB entry 5b1c: Crystal structure of DEN4 ED3 mutant with L387I
Classification: IMMUNE SYSTEM
Source organism: Dengue virus 4 Dominica/814669/1981
Experimental method: X-RAY DIFFRACTION
Resolution: 2.003 Å
Deposited: 2015-12-02
Authors: Kulkarni, M.R., Numoto, N., Ito, N., Kuroda, Y.
PDB entry 5b1d: Crystal structure of proteinase K from Engyodontium album
Classification: HYDROLASE
Source organism: Engyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-12-03
Authors: Sugahara, M., Suzuki, M., Numata, K.
PDB entry 5b1e: Crystal structure of proteinase K from Engyodontium album
Classification: HYDROLASE
Source organism: Engyodontium album
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-12-03
Authors: Sugahara, M., Suzuki, M., Numata, K.
PDB entry 5b1f: Crystal structure of hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-12-03
Authors: Sugahara, M., Suzuki, M., Nango, E.
PDB entry 5b1g: Crystal structure of hen egg-white lysozyme
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-12-03
Authors: Sugahara, M., Suzuki, M., Nango, E.
PDB entry 5b1h: Crystal structure of cystathionine beta-synthase from Lactobacillus plantarum
Classification: LYASE
Source organism: Lactobacillus plantarum WCFS1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2015-12-04
Authors: Matoba, Y., Sugiyama, M.
PDB entry 5b1i: Crystal structure of K42A mutant of cystathionine beta-synthase from Lactobacillus plantarum in a complex with L-methionine
Classification: LYASE
Source organism: Lactobacillus plantarum WCFS1
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2015-12-04
Authors: Matoba, Y., Sugiyama, M.
PDB entry 5b1j: Crystal structure of the electron-transfer complex of copper nitrite reductase with a cupredoxin
Classification: OXIDOREDUCTASE/ELECTRON TRANSPORT
Source organism: Alcaligenes xylosoxydans xylosoxydans; Hyphomicrobium denitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2015-12-04
Authors: Nojiri, M., Koteishi, H., Yoneda, R., Hira, D.
PDB entry 5b1k: Crystal structure of the chloride-bound form of blue copper nitrite reductase
Classification: OXIDOREDUCTASE
Source organism: Alcaligenes xylosoxydans xylosoxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2015-12-04
Authors: Nojiri, M.
PDB entry 5b1l: The mouse nucleosome structure containing H3t
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2015-12-08
Authors: Urahama, T., Machida, S., Horikoshi, N., Osakabe, A., Tachiwana, H., Taguchi, H., Kurumizaka, H.
PDB entry 5b1m: The mouse nucleosome structure containing H3.1
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2015-12-08
Authors: Urahama, T., Machida, S., Horikoshi, N., Osakabe, A., Tachiwana, H., Taguchi, H., Kurumizaka, H.
PDB entry 5b1n: DHp domain structure of EnvZ from Escherichia coli
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2015-12-09
Authors: Okajima, T., Eguchi, Y., Tochio, N., Inukai, Y., Shimizu, R., Ueda, S., Shinya, S., Kigawa, T., Fukamizo, T., Igarashi, M., Utsumi, R.
PDB entry 5b1o: DHp domain structure of EnvZ P248A mutant
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2015-12-09
Authors: Okajima, T., Eguchi, Y., Tochio, N., Inukai, Y., Shimizu, R., Ueda, S., Shinya, S., Kigawa, T., Fukamizo, T., Igarashi, M., Utsumi, R.
PDB entry 5b1q: Human herpesvirus 6B tegument protein U14
Classification: VIRAL PROTEIN
Source organism: Human herpesvirus 6B (strain HST)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2015-12-11
Authors: Wang, B., Nishimura, M., Tang, H., Kawabata, A., Mahmoud, N.F., Khanlari, Z., Hamada, D., Tsuruta, H., Mori, Y.
PDB entry 5b1r: Crystal structure of mouse CD72a CTLD
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2015-12-15
Authors: Shinagawa, K., Numoto, N., Tsubata, T., Ito, N.
PDB entry 5b1s: Crystal structure of Trypanosoma cruzi spermidine synthase in complex with 2-(2-fluorophenyl)ethanamine
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi strain CL Brener
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2015-12-17
Authors: Amano, Y., Tateishi, Y.
PDB entry 5b1u: Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to Hydrolyzed Imipenem
Classification: HYDROLASE/ANTIBIOTIC
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2015-12-20
Authors: Wachino, J., Arakawa, Y.
PDB entry 5b1w: Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in ligand-free form
Classification: CARBOHYDRATE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2015-12-21
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5b1x: Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in complex with biantennary glycan
Classification: CARBOHYDRATE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.902 Å
Deposited: 2015-12-21
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 5b1y: Crystal structure of NADPH bound carbonyl reductase from Aeropyrum pernix
Classification: OXIDOREDUCTASE
Source organism: Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2015-12-22
Authors: Yoneda, K., Sakuraba, H., Fukuda, Y., Araki, T., Ohshima, T.
PDB entry 5b1z: Crystal structure of Bcl-xL in complex with HBx-BH3 motif
Classification: APOPTOSIS
Source organism: Hepatitis B virus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2015-12-22
Authors: Yuan, Y.A.
PDB entry 5b21: Dimer structure of murine Nectin-1 D1
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2015-12-28
Authors: Sangawa, T., Takebe, K., Suzuki, M.
PDB entry 5b22: Dimer structure of murine Nectin-3 D1D2
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2015-12-28
Authors: Takebe, K., Sangawa, T., Katsutani, T., Narita, H., Suzuki, M.
PDB entry 5b23: X-ray Structure of Clostridium Perfringens Sortase B
Classification: HYDROLASE
Source organism: Clostridium perfringens (strain 13 / Type A)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2015-12-28
Authors: Kamitori, S., Yoshida, H., Tamai, E.
PDB entry 5b24: The crystal structure of the nucleosome containing cyclobutane pyrimidine dimer
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2015-12-31
Authors: Horikoshi, N., Tachiwana, H., Kagawa, W., Osakabe, A., Kurumizaka, H.
PDB entry 5b25: Crystal structure of human PDE1B with inhibitor 3
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-01-07
Authors: Ida, K., Lane, W., Snell, G., Sogabe, S.
PDB entry 5b26: Crystal structure of mouse SEL1L
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2016-01-09
Authors: Jeong, H., Lee, C.
PDB entry 5b27: The 1.02A structure of human FABP3 M20S mutant complexed with palmitic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2016-01-12
Authors: Matsuoka, D., Sugiyama, S., Kakinouchi, K., Niiyama, M., Murata, M., Matsuoka, S.
PDB entry 5b28: The 0.90A structure of human FABP3 F16V mutant complexed with palmitic acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.9 Å
Deposited: 2016-01-12
Authors: Matsuoka, D., Sugiyama, S., Kakinouchi, K., Niiyama, M., Murata, M., Matsuoka, S.
PDB entry 5b29: The 1.28A structure of human FABP3 F16V mutant complexed with palmitic acid at room temperature
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2016-01-12
Authors: Matsuoka, D., Sugiyama, S., Kakinouchi, K., Niiyama, M., Murata, M., Matsuoka, S.
PDB entry 5b2a: Crystal structure of a mutant of OspA
Classification: MEMBRANE PROTEIN
Source organism: Borrelia burgdorferi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-01-13
Authors: Hori , Y., Makabe, K.
PDB entry 5b2c: Crystal structure of Mumps virus hemagglutinin-neuraminidase
Classification: VIRAL PROTEIN
Source organism: Mumps virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.238 Å
Deposited: 2016-01-14
Authors: Kubota, M., Takeuchi, K., Watanabe, S., Ohno, S., Matsuoka, R., Kohda, D., Hiramatsu, H., Suzuki, Y., Nakayama, T., Terada, T., Shimizu, K., Shimizu, N., Yanagi, Y., Hashiguchi, T.
PDB entry 5b2d: Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose
Classification: VIRAL PROTEIN
Source organism: Mumps virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.177 Å
Deposited: 2016-01-14
Authors: Kubota, M., Takeuchi, K., Watanabe, S., Ohno, S., Matsuoka, R., Kohda, D., Hiramatsu, H., Suzuki, Y., Nakayama, T., Terada, T., Shimizu, K., Shimizu, N., Yanagi, Y., Hashiguchi, T.
PDB entry 5b2e: N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii complexed with its inhibitor MPG (acetate-containing condition)
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2016-01-15
Authors: Nakamura, T., Niiyama, M., Ida, K., Uegaki, K.
PDB entry 5b2f: N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii complexed with its inhibitor MPG (phosphate-containing condition)
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-01-15
Authors: Nakamura, T., Niiyama, M., Ida, K., Uegaki, K.
PDB entry 5b2g: Crystal structure of human claudin-4 in complex with C-terminal fragment of Clostridium perfringens enterotoxin
Classification: MEMBRANE PROTEIN
Source organism: Clostridium perfringens; Enterobacteria phage T4; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2016-01-15
Authors: Shinoda, T., Kimura-Someya, T., Shirouzu, M., Yokoyama, S.
PDB entry 5b2h: Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi
Classification: SUGAR BINDING PROTEIN
Source organism: Clostridium botulinum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-01-15
Authors: Akiyama, T., Hayashi, S., Matsumoto, T., Hasegawa, K., Yamano, A., Suzuki, T., Niwa, K., Watanabe, T., Sagane, Y., Yajima, S.
PDB entry 5b2i: Human nucleosome containing CpG unmethylated DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2016-01-16
Authors: Fujii, Y., Wakamori, M., Umehara, T., Yokoyama, S.
PDB entry 5b2j: Human nucleosome containing CpG methylated DNA
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2016-01-18
Authors: Fujii, Y., Wakamori, M., Umehara, T., Yokoyama, S.
PDB entry 5b2k: A crucial role of Cys218 in the stabilization of an unprecedented auto-inhibition form of MAP2K7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2016-01-19
Authors: Sogabe, Y., Hashimoto, T., Matsumoto, T., Kirii, Y., Sawa, M., Kinoshita, T.
PDB entry 5b2l: A crucial role of Cys218 in the stabilization of an unprecedented auto-inhibition form of MAP2K7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-01-19
Authors: Sogabe, Y., Hashimoto, T., Matsumoto, T., Kirii, Y., Sawa, M., Kinoshita, T.
PDB entry 5b2m: A crucial role of Cys218 in the stabilization of an unprecedented auto-inhibition form of MAP2K7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2016-01-19
Authors: Sogabe, Y., Hashimoto, T., Matsumoto, T., Kirii, Y., Sawa, M., Kinoshita, T.
PDB entry 5b2n: Crystal structure of the light-driven chloride ion-pumping rhodopsin, ClP, from Nonlabens marinus
Classification: TRANSPORT PROTEIN
Source organism: Nonlabens marinus S1-08
Experimental method: X-RAY DIFFRACTION
Resolution: 1.581 Å
Deposited: 2016-01-20
Authors: Hosaka, T., Kimura-Someya, T., Shirouzu, M.
PDB entry 5b2o: Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGG PAM)
Classification: HYDROLASE/RNA/DNA
Source organism: Francisella tularensis subsp. novicida U112; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-02-01
Authors: Hirano, H., Nishimasu, H., Nakane, T., Ishitani, R., Nureki, O.
PDB entry 5b2p: Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGA PAM)
Classification: HYDROLASE/RNA/DNA
Source organism: Francisella tularensis subsp. novicida U112; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-02-01
Authors: Hirano, H., Nishimasu, H., Nakane, T., Ishitani, R., Nureki, O.
PDB entry 5b2q: Crystal structure of Francisella novicida Cas9 RHA in complex with sgRNA and target DNA (TGG PAM)
Classification: HYDROLASE/RNA/DNA
Source organism: Francisella tularensis subsp. novicida U112; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-02-01
Authors: Hirano, H., Nishimasu, H., Nakane, T., Ishitani, R., Nureki, O.
PDB entry 5b2r: Crystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target DNA (TGA PAM)
Classification: HYDROLASE/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-02-02
Authors: Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 5b2s: Crystal structure of the Streptococcus pyogenes Cas9 EQR variant in complex with sgRNA and target DNA (TGAG PAM)
Classification: HYDROLASE/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-02-02
Authors: Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 5b2t: Crystal structure of the Streptococcus pyogenes Cas9 VRER variant in complex with sgRNA and target DNA (TGCG PAM)
Classification: HYDROLASE/RNA/DNA
Source organism: Streptococcus pyogenes serotype M1; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-02-02
Authors: Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.
PDB entry 5b2u: Crystal Structure of P450BM3 with N-perfluorohexanoyl -L-tryptophan
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-02-03
Authors: Cong, Z., Shoji, O., Kasai, C., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 5b2v: Crystal Structure of P450BM3 with N-perfluorohexanoyl-L-tryptophan
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-02-03
Authors: Cong, Z., Shoji, O., Kasai, C., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 5b2w: Crystal Structure of P450BM3 with N-perfluorododecanoyl-L-tryptophan
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2016-02-03
Authors: Cong, Z., Shoji, O., Kasai, C., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 5b2x: Crystal Structure of P450BM3 mutant with N-perfluoroheptanoyl-L-tryptophan
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2016-02-03
Authors: Cong, Z., Shoji, O., Kasai, C., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 5b2y: Crystal Structure of P450BM3 with N-perfluorodecanoyl-L-tryptophan
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2016-02-07
Authors: Cong, Z., Shoji, O., Kasai, C., Sugimoto, H., Shiro, Y., Watanabe, Y.
PDB entry 5b2z: H-Ras WT in complex with GppNHp (state 2*) before structural transition by humidity control
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2016-02-07
Authors: Kumasaka, T., Miyano, N., Baba, S., Matsumoto, S., Kataoka, T., Shima, F.
PDB entry 5b30: H-Ras WT in complex with GppNHp (state 1) after structural transition by humidity control
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2016-02-08
Authors: Kumasaka, T., Miyano, N., Baba, S., Matsumoto, S., Kataoka, T., Shima, F.
PDB entry 5b31: The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.1.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2016-02-08
Authors: Horikoshi, N., Taguchi, H., Arimura, Y., Kurumizaka, H.
PDB entry 5b32: The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.3.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2016-02-08
Authors: Horikoshi, N., Taguchi, H., Arimura, Y., Kurumizaka, H.
PDB entry 5b33: The crystal structure of the H2AZ nucleosome with H3.3.
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.925 Å
Deposited: 2016-02-08
Authors: Horikoshi, N., Taguchi, H., Arimura, Y., Kurumizaka, H.
PDB entry 5b34: Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles in Complex with Iodine-labeled Detergent HAD13a Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA
Classification: PROTON TRANSPORT
Source organism: Halobacterium salinarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2016-02-10
Authors: Mizohata, E., Nakane, T.
PDB entry 5b35: Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA
Classification: PROTON TRANSPORT
Source organism: Halobacterium salinarum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2016-02-10
Authors: Mizohata, E., Nakane, T., Suzuki, M.
PDB entry 5b36: Crystal Structure of the O-Phosphoserine Sulfhydrylase from Aeropyrum pernix Complexed with Cysteine
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2016-02-10
Authors: Nakamura, T., Takeda, E., Kawai, Y., Kataoka, M., Ishikawa, K.
PDB entry 5b37: Crystal structure of L-tryptophan dehydrogenase from Nostoc punctiforme
Classification: OXIDOREDUCTASE
Source organism: Nostoc punctiforme NIES-2108
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2016-02-11
Authors: Wakamatsu, T., Sakuraba, H., Kitamura, M., Hakumai, Y., Ohnishi, K., Ashiuchi, M., Ohshima, T.
PDB entry 5b38: KIR3DL1*005 in complex with HLA-B*57:01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-02-12
Authors: Vivian, J.P., Rossjohn, J.
PDB entry 5b39: KIR3DL1*015 in complex with HLA-B*57:01
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2016-02-12
Authors: Vivian, J.P., Rossjohn, J.
PDB entry 5b3a: Crystal Structure of O-Phoshoserine Sulfhydrylase from Aeropyrum pernix in Complexed with the alpha-Aminoacrylate Intermediate
Classification: TRANSFERASE
Source organism: Aeropyrum pernix K1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2016-02-12
Authors: Nakamura, T., Takeda, E., Kawai, Y., Kataoka, M., Ishikawa, K.
PDB entry 5b3d: Structure of a flagellar type III secretion chaperone, FlgN
Classification: PROTEIN TRANSPORT
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2016-02-15
Authors: Nakanishi, Y., Kinoshita, M., Namba, K., Minamino, T., Imada, K.
PDB entry 5b3f: Crystal structure of phosphoribulokinase from Methanospirillum hungatei
Classification: TRANSFERASE
Source organism: Methanospirillum hungatei JF-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2016-02-22
Authors: Matsumura, H., Ashida, H.
PDB entry 5b3g: The crystal structure of the heterodimer of SHORT-ROOT and SCARECROW GRAS domains
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2016-02-29
Authors: Hirano, Y., Nakagawa, M., Hakoshima, T.
PDB entry 5b3h: The crystal structure of the JACKDAW/IDD10 bound to the heterodimeric SHR-SCR complex
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2016-02-29
Authors: Hirano, Y., Suyama, T., Nakagawa, M., Hakoshima, T.
PDB entry 5b3i: Homo-dimeric structure of cytochrome c' from Thermophilic Hydrogenophilus thermoluteolus
Classification: ELECTRON TRANSPORT
Source organism: Hydrogenophilus thermoluteolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2016-02-29
Authors: Fujii, S., Oki, H., Kawahara, K., Yamane, D., Yamanaka, M., Maruno, T., Kobayashi, Y., Masanari, M., Wakai, S., Nishihara, H., Ohkubo, T., Sambongi, Y.
PDB entry 5b3j: Activation of NMDA receptors and the mechanism of inhibition by ifenprodil
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; Rattus norvegicus; Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2016-03-01
Authors: Tajima, N., Karakas, E., Grant, T., Simorowski, N., Diaz-Avalos, R., Grigorieff, N., Furukawa, H.
PDB entry 5b3k: C101A mutant of Flavodoxin from Pseudomonas aeruginosa
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2016-03-03
Authors: Okada, D., Nakanishi, T., Kitamura, M.