LiteFold/PDB huggingface dataset:
PDB entry 8vc5: Crystal structure of glutamyl-tRNA synthetase GluRS from Pseudomonas aeruginosa (Zinc bound)
Classification: LIGASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-13
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vc6: Voltage gated potassium ion channel Kv1.2 in Potassium
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2023-12-13
Authors: Wu, Y., Sigworth, F.J.
PDB entry 8vc7: Crystal Structure of Human BTN2A1 ectodomain in complex with Antagonist 2A1.9 Fab
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2023-12-13
Authors: Ramesh, A., Roy, S., Adams, E.
PDB entry 8vc8: Crystal structure of heme-loaded design: HEM_3.C9
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-12-13
Authors: Kalvet, I., Bera, A.K., Baker, D.
PDB entry 8vc9: Crystal structure of Rec-controlled histidine kinase LvrB, BeF3-activated
Classification: SIGNALING PROTEIN
Source organism: Leptospira interrogans serovar Copenhageni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-12-13
Authors: Mechaly, A., Buschiazzo, A.
PDB entry 8vca: Crystal Structure of plant Carboxylesterase 15
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-12-13
Authors: Palayam, M., Shabek, N.
PDB entry 8vcb: Crystal structure of a Bacteroides fragilis S41 protease
Classification: HYDROLASE
Source organism: Bacteroides fragilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-12-13
Authors: Fellner, M., Bogyo, M., Lakemeyer, M.
PDB entry 8vcc: Crystal structure of H19 influenza A virus hemagglutinin from A/lesser scaup/California/3087/2010
Classification: VIRAL PROTEIN
Source organism: Influenza A virus (A/lesser scaup/California/3087/2010)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.383 Å
Deposited: 2023-12-14
Authors: Kottur, J., Aggarwal, A.K.
PDB entry 8vcd: Crystal Structure of plant Carboxylesterase 15 bound to SL intermediate
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-12-14
Authors: Palayam, M., Shabek, N.
PDB entry 8vce: Crystal Structure of plant Carboxylesterase 20
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-12-14
Authors: Palayam, M., Shabek, N.
PDB entry 8vcf: Crystal structure of Superbinder Src SH2 domain with Cysteine to Serine mutations
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-12-14
Authors: Hashem, A., Nyovanie, S., Patskovsky, Y., Oltean, N., Krogsgaard, M.
PDB entry 8vcg: Mutant Src SH2 domain in complex with phosphotyrosine
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-12-14
Authors: Hashem, A., Nyovanie, S., Oltean, N., Patskovska, L., Patskovsky, Y., Krogsgaard, M.
PDB entry 8vch: Voltage gated potassium ion channel Kv1.2 W366F, C-type inactivated
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2023-12-14
Authors: Wu, Y., Sigworth, F.J.
PDB entry 8vci: SARS-CoV-2 Frameshift Stimulatory Element with Upstream Multibranch Loop
Classification: RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2023-12-14
Authors: Peterson, J.M., Becker, S.T., O'Leary, C.A., Juneja, P., Yang, Y., Moss, W.N.
PDB entry 8vcj: CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2023-12-14
Authors: Shen, Y., Guarne, A.
PDB entry 8vck: Galactose-binding lectin from Mytilus californianus, Isoform 1 (rMcL-1)
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus californianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2023-12-14
Authors: Hernandez-Santoyo, A., Loera-Rubalcava, J.
PDB entry 8vcl: Crystal structure of HLA-A*03:01 in complex with a mutant PIK3CA peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-14
Authors: Ma, J., Baker, B.M.
PDB entry 8vcm: Crystal structure of rMcL-1 in complex with galactose
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus californianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2023-12-14
Authors: Hernandez-Santoyo, A., Loera-Rubalcava, J.
PDB entry 8vcn: GluER mutant - W66F F269Y Q293T F68Y T36E P263L
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2023-12-14
Authors: Jeffrey, P.D., Sorigue, D.R., Liu, Y., Hyster, T.K.
PDB entry 8vco: Crystal structure of rMcL-1 in complex with N-acetyl-D-galactosamine
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus californianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-12-14
Authors: Hernandez-Santoyo, A., Loera-Rubalcava, J.
PDB entry 8vcp: Crystal structure of dimeric rMcL-1 in complex with raffinose
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus californianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-12-14
Authors: Hernandez-Santoyo, A., Loera-Rubalcava, J.
PDB entry 8vcq: Crystal structure of the oligomeric rMcL-1 in complex with raffinose
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus californianus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-12-14
Authors: Hernandez-Santoyo, A., Loera-Rubalcava, J.
PDB entry 8vcr: SARS-CoV-2 Spike S2 bound to Fab 54043-5
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-12-14
Authors: Johnson, N.V., McLellan, J.S.
PDB entry 8vcs: Crystal structure of the oligomeric rMcL-1 in complex with lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus californianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-12-14
Authors: Hernandez-Santoyo, A., Loera-Rubalcava, J.
PDB entry 8vct: CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2023-12-14
Authors: Shen, Y., Guarne, A.
PDB entry 8vcu: Crystal structure of the oligomeric rMcL-1 in complex with lactulose
Classification: SUGAR BINDING PROTEIN
Source organism: Mytilus californianus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-12-14
Authors: Hernandez-Santoyo, A., Loera-Rubalcava, J.
PDB entry 8vcv: Lineage IV Lassa virus glycoprotein (Josiah) in complex with rabbit polyclonal antibody (GPC-C epitope)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lassa virus Josiah; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-14
Authors: Brouwer, P.J.M., Perrett, H.R., Ward, A.B.
PDB entry 8vcw: X-Ray Crystal Structure of the biotin synthase from B. obeum
Classification: TRANSFERASE
Source organism: Blautia obeum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-12-14
Authors: Lachowicz, J.C., Grove, T.L.
PDB entry 8vcx: Human TCR A2.13 in complex with DQ8-InsCpep
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2023-12-14
Authors: Tran, T.M., Lim, J.J., Loh, T.J., Mannering, I.S., Rossjohn, J., Reid, H.H.
PDB entry 8vcy: Human TCR A2.13 in complex with DQ8-InsC8-15NPY
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-12-14
Authors: Tran, T.M., Lim, J.J., Loh, T.Y., Mannering, I.S., Rossjohn, J., Reid, H.H.
PDB entry 8vcz: Crystal Structure of KAI2 from Oryza sativa
Classification: HYDROLASE
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-12-14
Authors: Gilio, A.K., Shabek, N., Guercio, A.M., Pawlak, J.
PDB entry 8vd0: Human TCR ET650-4 in complex with DQ8-InsC8-15-IAPP2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-14
Authors: Tran, T.M., Lim, J.J., Loh, T.Y., Mannering, I.S., Rossjohn, J., Reid, H.H.
PDB entry 8vd1: Crystal Structure of KAI2 from Oryza sativa with MPD
Classification: HYDROLASE
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2023-12-14
Authors: Gilio, A.K., Shabek, N., Guercio, A.M., Pawlak, J.
PDB entry 8vd2: Human TCR ET650-4 in complex with DQ8-InsC8-15-IAPP1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-12-14
Authors: Tran, T.M., Lim, J.J., Loh, T.Y., Mannering, I.S., Rossjohn, J., Reid, H.H.
PDB entry 8vd3: Crystal Structure of D14 from Arabidopsis thaliana
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-14
Authors: Gilio, A.K., Shabek, N., Guercio, A.M., Pawlak, J.
PDB entry 8vd4: SaPI1 mature capsid structure containing DNA
Classification: VIRUS LIKE PARTICLE
Source organism: Dubowvirus dv80alpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-14
Authors: Mukherjee, A., Kizziah, J.L., Dokland, T.
PDB entry 8vd5: SaPI1 mature capsid structure without DNA
Classification: VIRUS LIKE PARTICLE
Source organism: Dubowvirus dv80alpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-14
Authors: Mukherjee, A., Kizziah, J.L., Dokland, T.
PDB entry 8vd6: Crystal structure of CAP Repeat
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2023-12-14
Authors: Bera, A.K., Gershon, J.M., Kang, A., Baker, D.
PDB entry 8vd7: MicroED structure of SARS-CoV-2 main protease (MPro/3CLPro) with missing cone eliminated by suspended drop
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.15 Å
Deposited: 2023-12-14
Authors: Bu, G., Gillman, C., Danelius, E., Hattne, J., Nannenga, B.L., Gonen, T.
PDB entry 8vd8: SaPI1 portal structure in mature capsids containing DNA
Classification: STRUCTURAL PROTEIN
Source organism: Dubowvirus dv80alpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-14
Authors: Kizziah, J.L., Mukherjee, A., Dokland, T.
PDB entry 8vd9: Crystal structure of Bacillus subtilis FabHA, beta-ketoacyl carrier protein synthase III
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-12-14
Authors: Radka, C.D., Rock, C.O.
PDB entry 8vda: Crystal structure of Bacillus subtilis FabHA-coenzyme A complex
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-12-14
Authors: Radka, C.D., Rock, C.O.
PDB entry 8vdb: Crystal structure of Bacillus subtilis FabHB, beta-ketoacyl carrier protein synthase III
Classification: TRANSFERASE
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-14
Authors: Radka, C.D., Rock, C.O.
PDB entry 8vdc: SaPI1 portal structure in mature capsids without DNA
Classification: STRUCTURAL PROTEIN
Source organism: Dubowvirus dv80alpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-12-14
Authors: Mukherjee, A., Kizziah, J.L., Dokland, T.
PDB entry 8vdd: Crystal structure of Proinsulin C-peptide bound to HLA-DQ8
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-12-14
Authors: Tran, T.M., Lim, J.J., Loh, T.Y., Mannering, I.S., Rossjohn, J., Reid, H.H.
PDB entry 8vde: SaPI1 portal-capsid interface in mature capsids with DNA
Classification: STRUCTURAL PROTEIN
Source organism: Dubowvirus dv80alpha
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-14
Authors: Kizziah, J.L., Mukherjee, A., Dokland, T.
PDB entry 8vdf: Cryo-EM structure of human monoclonal antibody C7 targeting IT4VAR22 CIDRa1.7 (PfEMP1 A)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-12-15
Authors: Raghavan, S.S.R., Ward, A.B.
PDB entry 8vdg: Cryo-EM structure of human monoclonal antibody C74 targeting IT4VAR22 CIDRa1.7
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-12-15
Authors: Raghavan, S.S.R., Ward, A.B.
PDB entry 8vdh: Human PU.1 ETS-Domain (165-270) Bound to d(AATAGAAGGAAGTGGG) in Ternary Complex with DB2447
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-12-15
Authors: Terrell, J.R., Ogbonna, E.N., Poon, G.M.K., Wilson, W.D.
PDB entry 8vdi: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGAGGAAGTGGG) in Ternary Complex with DB2447
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2023-12-15
Authors: Terrell, J.R., Ogbonna, E.N., Poon, G.M.K., Wilson, W.D.
PDB entry 8vdj: Crystal structure of SARS-CoV-2 3CL protease (3CLpro) as a covalent complex with EDP-235
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2023-12-15
Authors: Cade, I.A., Rhodin, M.H.J.
PDB entry 8vdk: Crystal Structure of LPXTG-motif Cell Wall Anchor Domain Protein MSCRAMM_SdrD from Staphylococcus aureus
Classification: CELL ADHESION
Source organism: Staphylococcus aureus subsp. aureus JH1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-12-15
Authors: Kim, Y., Tan, A., Endres, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8vdl: HB3VAR03 CIDRa1.4 domain with C7 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum HB3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2023-12-15
Authors: Hurlburt, N.K., Pancera, M.
PDB entry 8vdn: DNA Ligase 1 with nick dG:C
Classification: Ligase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2023-12-16
Authors: KanalElamparithi, B., Gulkis, M., Caglayan, M.
PDB entry 8vdo: Cryogenic electron microscopy model of full-length talin lacking F2, R12 and FABD.
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-12-16
Authors: Izard, T., Rangarajan, E.S.
PDB entry 8vdp: Cryogenic electron microscopy model of full-length talin without FABD
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-17
Authors: Izard, T., Rangarajan, E.S.
PDB entry 8vdq: Cryogenic electron microscopy model of full-length talin
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2023-12-17
Authors: Izard, T., Rangarajan, E.S.
PDB entry 8vdr: Cryogenic electron microscopy model of full-length talin without R12 and FABD
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-17
Authors: Izard, T., Rangarajan, E.S.
PDB entry 8vds: DNA Ligase 1 with nick DNA 3'rG:C
Classification: Ligase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2023-12-17
Authors: KanalElamparithi, B., Gulkis, M., Caglayan, M.
PDB entry 8vdt: DNA Ligase 1 with nick DNA 3'rA:T
Classification: Ligase/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2023-12-17
Authors: KanalElamparithi, B., Gulkis, M., Caglayan, M.
PDB entry 8vdu: Crystal structure of hybrid insulin peptide (InsC8-15-IAPP74-80) bound to HLA-DQ8
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2023-12-17
Authors: Tran, T.M., Lim, J.J., Loh, T.Y., Mannering, I.S., Rossjohn, J., Reid, H.H.
PDB entry 8vdv: pcsk9 in complex with inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.972 Å
Deposited: 2023-12-18
Authors: Xu, M., Chopra, R.
PDB entry 8vdw: X-Ray Crystal Structure of the biotin synthase from V. parvula
Classification: TRANSFERASE
Source organism: Veillonella parvula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.807 Å
Deposited: 2023-12-18
Authors: Lachowicz, J.C., Grove, T.L.
PDB entry 8vdx: Crystal structure of bacterial extracellular solute-binding protein from Bordetella bronchiseptica RB50
Classification: STRUCTURAL GENOMICS
Source organism: Bordetella bronchiseptica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2023-12-18
Authors: Chang, C., Tesar, C., Endres, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 8vdy: Crystal Structure of Delta 114-117 D-Dopachrome Tautomerase (D-DT)
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-12-18
Authors: Parkins, A., Pilien, A., Wolff, A., Thompson, M.C., Pantouris, G.
PDB entry 8vdz: A designed tetrahedral protein scaffold - DARP14
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-12-18
Authors: Suder, D.S., Gonen, S.
PDB entry 8ve0: Human transthyretin covalently modified with A2-derived stilbene in the compressed conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-12-18
Authors: Basanta, B., Nugroho, K., Yan, N., Kline, G.M., Tsai, F.J., Wu, M., Kelly, J.W., Lander, G.C.
PDB entry 8ve1: Human transthyretin covalently modified with A2-derived stilbene in the canonical conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-12-18
Authors: Basanta, B., Nugroho, K., Yan, N., Kline, G.M., Tsai, F.J., Wu, M., Kelly, J.W., Lander, G.C.
PDB entry 8ve2: Unliganded human transthyretin in the canonical conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-18
Authors: Basanta, B., Nugroho, K., Yan, N., Kline, G.M., Tsai, F.J., Wu, M., Kelly, J.W., Lander, G.C.
PDB entry 8ve3: Unliganded human transthyretin in the compressed conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-18
Authors: Basanta, B., Nugroho, K., Yan, N., Kline, G.M., Tsai, F.J., Wu, M., Kelly, J.W., Lander, G.C.
PDB entry 8ve4: Unliganded human transthyretin in the frayed conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-18
Authors: Basanta, B., Nugroho, K., Yan, N., Kline, G.M., Tsai, F.J., Wu, M., Kelly, J.W., Lander, G.C.
PDB entry 8ve5: (Biarylamine-FT2-WT)1(C10A)3-human transthyretin in the compressed conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-12-18
Authors: Basanta, B., Nugroho, K., Yan, N., Kline, G.M., Tsai, F.J., Wu, M., Kelly, J.W., Lander, G.C.
PDB entry 8ve6: (Biarylamine-FT2-WT)1(C10A)3-human transthyretin in the frayed conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-12-18
Authors: Basanta, B., Nugroho, K., Yan, N., Kline, G.M., Tsai, F.J., Wu, M., Kelly, J.W., Lander, G.C.
PDB entry 8ve7: A DARPin displayed on a designed tetrahedral protein scaffold
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-12-18
Authors: Suder, D.S., Gonen, S.
PDB entry 8ve8: Lineage IV Lassa virus glycoprotein (Josiah) in complex with rabbit polyclonal antibody (GP1-A epitope)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lassa virus Josiah; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-18
Authors: Brouwer, P.J.M., Perrett, H.R., Ward, A.B.
PDB entry 8ve9: IsPETase - ACCCETN mutant - CombiPETase
Classification: HYDROLASE
Source organism: Piscinibacter sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-12-18
Authors: Joho, Y., Royan, S., Newton, S., Caputo, A.T., Ardevol Grau, A., Jackson, C.
PDB entry 8vea: De novo designed helical oligomer sg266
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-12-18
Authors: Bera, A.K., Gerben, S., Baker, D.
PDB entry 8veb: Cryo-EM structure of antibody T5-1E08 in complex with stabilized H1N1 Influenza Hemagglutinin Trimer (A/Kiev/1/57)
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-12-18
Authors: Cerutti, G., Shapiro, L.
PDB entry 8vec: Deep Mutational Scanning of SARS-CoV-2 PLpro
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-18
Authors: Wu, X., Nguyen, J.V., Call, M.E., Call, M.J.
PDB entry 8ved: Cryo-EM structure of antibody T5-1E11 in complex with stabilized H1N1 Influenza Hemagglutinin Trimer (A/Kiev/1/57)
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-12-18
Authors: Cerutti, G., Shapiro, L.
PDB entry 8vee: Cryo-EM structure of antibody T5-1E08 in complex with H7N9 Influenza Hemagglutinin Trimer (A/Shanghai/2/13)
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2023-12-18
Authors: Cerutti, G., Casner, R.G., Shapiro, L.
PDB entry 8vef: Cryo-EM structure of antibody T5-1E08 UCA (unmutated common ancestor) in complex with stabilized H1N1 Influenza Hemagglutinin Trimer (A/Kiev/1/57)
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-12-18
Authors: Cerutti, G., Shapiro, L.
PDB entry 8veg: Crystal structure of an engineered conformationally rigid anti-Tryptase Fab variant E104.v1.4DS.S112F
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-12-18
Authors: Kung, J.E., Sudhamsu, J.
PDB entry 8veh: Crystal structure of outer membrane lipoprotein carrier protein (LolA) from Rickettsia bellii
Classification: LIPID TRANSPORT
Source organism: Rickettsia bellii RML369-C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-12-19
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8vei: De novo designed colic acid binder CHD_r1
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-12-19
Authors: Bera, A.K., An, L., Baker, D.
PDB entry 8vej: De novo designed cholic acid binder: CHD_buttress
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.59 Å
Deposited: 2023-12-19
Authors: Bera, A.K., Tran, L., Kang, A., Baker, D.
PDB entry 8vek: IsPETase - ACC mutant
Classification: HYDROLASE
Source organism: Piscinibacter sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2023-12-19
Authors: Joho, Y., Royan, S., Newton, S., Caputo, A.T., Ardevol Grau, A., Jackson, C.
PDB entry 8vel: IsPETase - ACCCC mutant
Classification: HYDROLASE
Source organism: Piscinibacter sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.624 Å
Deposited: 2023-12-19
Authors: Joho, Y., Royan, S., Newton, S., Caputo, A.T., Ardevol Grau, A., Jackson, C.
PDB entry 8vem: IsPETase - ACCE mutant
Classification: HYDROLASE
Source organism: Piscinibacter sakaiensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.711 Å
Deposited: 2023-12-19
Authors: Joho, Y., Royan, S., Newton, S., Caputo, A.T., Ardevol Grau, A., Jackson, C.
PDB entry 8ven: Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 in complex with cefoperazone
Classification: HYDROLASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-12-20
Authors: Stratton, C., Bala, S., Davies, C.
PDB entry 8veo: Crystal structure of PRMT5:MEP50 in complex with MTA
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2023-12-20
Authors: Whittington, D.A.
PDB entry 8vep: Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 acylated by piperacillin
Classification: HYDROLASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.002 Å
Deposited: 2023-12-20
Authors: Stratton, C.M., Bala, S., Davies, C.
PDB entry 8veq: Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 in complex with azlocillin
Classification: HYDROLASE
Source organism: Neisseria gonorrhoeae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-12-20
Authors: Stratton, C., Bala, S., Davies, C.
PDB entry 8ver: Structure of YicC endoribonuclease
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-12-20
Authors: Dahlin, H.R., Khamrui, S., Lazarus, M.B.
PDB entry 8ves: Structure of YicC endoribonuclease bound to an RNA substrate
Classification: HYDROLASE
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-12-20
Authors: Wu, R., Lazarus, M.B.
PDB entry 8vet: Crystal structure of PRMT5:MEP50 in complex with MTA and oxamide compound 1
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2023-12-20
Authors: Whittington, D.A.
PDB entry 8veu: Crystal structure of PRMT5:MEP50 in complex with MTA and oxamide compound 23
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-12-20
Authors: Whittington, D.A.
PDB entry 8vev: Structure of a mouse IgG antibody antigen-binding fragment (Fab) targeting N6-methyladenosine (m6A), an RNA modification, m6A nucleoside ligand
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2023-12-20
Authors: Aoki, S.T.
PDB entry 8vew: Crystal structure of PRMT5:MEP50 in complex with MTA and oxamide compound 24
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-12-20
Authors: Whittington, D.A.
PDB entry 8vex: Crystal structure of PRMT5:MEP50 in complex with MTA and oxamide compound 28
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2023-12-20
Authors: Whittington, D.A.
PDB entry 8vey: Crystal structure of PRMT5:MEP50 in complex with MTA and TNG908
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2023-12-20
Authors: Whittington, D.A.
PDB entry 8vez: De novo design apixaban-binding protein: apx1049
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-12-20
Authors: Bera, A.K., Lee, G.R., Baker, D.
PDB entry 8vf0: The crystal structure of QE CYP199A4 bound to 4-methoxybenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.028 Å
Deposited: 2023-12-21
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8vf1: Crystal Structure of the Hendra Virus Attachment G glycoprotein (HeV-G)
Classification: VIRAL PROTEIN
Source organism: Henipavirus hendraense
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-12-21
Authors: Ve, T., von Itzstein, M.S., Winger, M., Malde, A.K., Holt, S., McAtamney, S., Hartley-Tassell, L., Maggioni, A., von Itzstein, M.
PDB entry 8vf2: CryoEM structure of Ku homodimer super-complex with linear DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-21
Authors: Baral, J., Rouiller, I., Das, A.K.
PDB entry 8vf3: The crystal structure of GALQE CYP199A4 bound to 4-methoxybenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.469 Å
Deposited: 2023-12-21
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8vf4: CryoEM structure of Ku homodimer super-complex with hairpin DNA
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-12-21
Authors: Baral, J., Rouiller, I., Das, A.K.
PDB entry 8vf5: CryoEM structure of Ku homodimer in complex with linear DNA
Classification: DNA BINDING PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-12-21
Authors: Baral, J., Rouiller, I., Das, A.K.
PDB entry 8vf6: Crystal structure of Serine/threonine-protein kinase 33 (STK33) Kinase Domain in complex with inhibitor CDD-2211
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-12-21
Authors: Ta, H.M., Kim, C., Ku, K.A., Matzuk, M.M.
PDB entry 8vf7: Modifying portion of human FASN with NADPH and the ACP at the ER domain
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-21
Authors: Schultz, K., Marmorstein, R.
PDB entry 8vf8: Binary DNA Polymerase Beta bound to DNA containing primer terminal dC base-paired with FapydG
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vf9: Binary DNA Polymerase Beta bound to DNA containing primer terminal dA base-paired with FapydG
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfa: Ternary DNA Polymerase Beta bound to DNA containing primer terminal dC base-paired with FapydG
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfb: Ternary DNA Polymerase Beta bound to DNA containing primer terminal dA base-paired with FapydG
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfc: Binary DNA Polymerase Beta bound to DNA containing primer terminal T base-paired with FapydG
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfd: Ternary DNA Polymerase Beta bound to DNA containing template FapydG incoming TTP analog
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfe: Binary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a T
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vff: Binary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a dA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfg: Binary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a dC
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfh: Ternary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a dC
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfi: Ternary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a dA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfj: Polymerase Beta Host Guest Complex Containing FapydG base paired with TMP
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-12-21
Authors: Oden, P.N., Ryan, B.J., Freudenthal, B.D.
PDB entry 8vfk: Crystal Structure of Delta 109-117 D-Dopachrome Tautomerase (D-DT)
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-12-21
Authors: Parkins, A., Pilien, A., Wolff, A., Thompson, M.C., Pantouris, G.
PDB entry 8vfl: Crystal Structure of WT D-Dopachrome Tautomerase (D-DT) at 290K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.23 Å
Deposited: 2023-12-21
Authors: Parkins, A., Pilien, A., Wolff, A., Thompson, M.C., Pantouris, G.
PDB entry 8vfm: Salmonella effector protein SipA decorated actin filament
Classification: CELL INVASION
Source organism: Gallus gallus; Salmonella
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-12-21
Authors: Guo, E.Z., Galan, J.E.
PDB entry 8vfn: Crystal Structure of WT D-Dopachrome Tautomerase (D-DT) at 310K
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2023-12-21
Authors: Parkins, A., Pilien, A., Wolff, A., Thompson, M.C., Pantouris, G.
PDB entry 8vfo: Crystal Structure of L117G Variant of D-Dopachrome Tautomerase (D-DT)
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2023-12-21
Authors: Parkins, A., Pilien, A., Thompson, M.C., Pantouris, G.
PDB entry 8vfp: The crystal structure of GALQE CYP199A4 bound to 4-methylbenzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-12-21
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8vfq: De novo design apixaban-binding protein: apx1049
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-12-21
Authors: Bera, A.K., Lee, G.R., Baker, D.
PDB entry 8vfr: The crystal structure of 4-methylbenzoic acid-bound GALQE CYP199A4 after soaking in 10 mM H2O2 for 5 minutes
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.018 Å
Deposited: 2023-12-21
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8vfs: oppF ROSE-like RNA thermometer structure
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-12-21
Authors: Shaffer, S.N., Passalacqua, L.F.M., Abdelsayed, M.M., Ferre-D'Amare, A.R.
PDB entry 8vft: Translating 80S rabbit ribosome stalled by emetine with eEF2
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-22
Authors: Murray, J., Shao, S.
PDB entry 8vfu: The Fab Crystal Structure of the PAN IL-1 Family Inhibitor Antibody 3G5
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-12-22
Authors: Fields, J.K., Sundberg, E.J.
PDB entry 8vfv: HIV Env BG505_MD39_B16 SOSIP boosting trimer in complex with B16_d77.5 mouse Fab and RM20A3 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-12-22
Authors: Ozorowski, G., Torres, J.L., Ward, A.B.
PDB entry 8vfw: Crystal Structure of V113N D-Dopachrome Tautomerase (D-DT)
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.31 Å
Deposited: 2023-12-22
Authors: Parkins, A., Wolff, A., Thompson, M.C., Pantouris, G.
PDB entry 8vfx: Cryo-EM structure of 186bp ALBN1 nucleosome aided by scFv
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-12-22
Authors: Zhou, B.R., Bai, Y.
PDB entry 8vfy: Cryo-EM structure of FoxA1 in complex with ALBN1 nucleosome (class 1)
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-12-22
Authors: Zhou, B.R., Bai, Y.
PDB entry 8vfz: Cryo-EM structure of FoxA1 in complex with ALBN1 nucleosome (class 2)
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-12-22
Authors: Zhou, B.R., Bai, Y.
PDB entry 8vg0: Cryo-EM structure of GATA4 in complex with ALBN1 nucleosome
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-12-22
Authors: Zhou, B.R., Bai, Y.
PDB entry 8vg1: Cryo-EM structure of FoxA1 and GATA4 in complex with ALBN1 nucleosome
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2023-12-22
Authors: Zhou, B.R., Bai, Y.
PDB entry 8vg2: Cryo-EM structure of FoxA1 and GATA4 in complex with H14 chromatosome
Classification: NUCLEAR PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-12-22
Authors: Zhou, B.R., Bai, Y.
PDB entry 8vg4: Modifying portion of human FASN with NADPH and the ACP at the DH domain
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-12-22
Authors: Schultz, K., Marmorstein, R.
PDB entry 8vg5: Crystal Structure of V113N Variant of D-Dopachrome Tautomerase (D-DT) Bound with 4CPPC
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-12-22
Authors: Parkins, A., Pilien, A., Thompson, M.C., Pantouris, G.
PDB entry 8vg6: Structure of Tulane virus
Classification: VIRUS
Source organism: Tulane virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-12-22
Authors: Yu, G., Li, K., Jiang, W.
PDB entry 8vg7: Crystal Structure of T115A Variant of D-Dopachrome Tautomerase (D-DT)
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2023-12-23
Authors: Parkins, A., Pilien, A., Wolff, A., Thompson, M.C., Pantouris, G.
PDB entry 8vg8: Crystal Structure of T115A Variant of D-Dopachrome Tautomerase (D-DT) Bound to 4CPPC
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2023-12-23
Authors: Parkins, A., Pilien, A., Wolff, A., Thompson, M.C., Pantouris, G.
PDB entry 8vg9: Crystallographic structure of Ruminococcus champanellensis xylanase (RcXyn30A)
Classification: HYDROLASE
Source organism: Ruminococcus champanellensis 18P13 = JCM 17042
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2023-12-24
Authors: Vacilotto, M.M., Araujo, E.A., Polikarpov, I.
PDB entry 8vga: Crystal Structure of Guanine Nucleotide-Binding Protein (G Protein) Alpha-1 Subunit from Selaginella moellendorffii in complex with GTP gamma S
Classification: SIGNALING PROTEIN
Source organism: Selaginella moellendorffii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57602 Å
Deposited: 2023-12-27
Authors: Lee, S.G., Jez, J.M.
PDB entry 8vgb: Crystal Structure of Guanine Nucleotide-Binding Protein Alpha Subunit (G Protein) from Oryza sativa in complex with GDP
Classification: SIGNALING PROTEIN
Source organism: Oryza sativa Indica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99 Å
Deposited: 2023-12-27
Authors: Lee, S.G., Jez, J.M.
PDB entry 8vgc: Complex of ExbD with D-box peptide: Orthorhombic form
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-12-27
Authors: Loll, P.J.
PDB entry 8vgd: Complex of ExbD with D-box peptide: Tetragonal form
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-12-27
Authors: Loll, P.J.
PDB entry 8vge: Crystal structure of an engineered conformationally rigid anti-Tryptase Fab variant E104.v1.4DS.A114F
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Sudhamsu, J.
PDB entry 8vgf: Crystal structure of an engineered conformationally rigid anti-Tryptase Fab variant E104.v1.5DS
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Sudhamsu, J.
PDB entry 8vgg: Crystal structure of an engineered conformationally rigid anti-Tryptase Fab variant E104.v1.6DS
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Sudhamsu, J.
PDB entry 8vgh: CryoEM structure of tryptase in complex with wild type anti-tryptase Fab E104.v1
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Johnson, M.C., Sudhamsu, J.
PDB entry 8vgi: CryoEM structure of tryptase in complex with engineered conformationally rigid anti-tryptase Fab E104.v1.2DS
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Johnson, M.C., Sudhamsu, J.
PDB entry 8vgj: CryoEM structure of tryptase in complex with engineered conformationally rigid anti-tryptase Fab E104.v1.4DS
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Johnson, M.C., Sudhamsu, J.
PDB entry 8vgk: CryoEM structure of tryptase in complex with engineered conformationally rigid anti-tryptase Fab E104.v1.6DS
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Johnson, M.C., Sudhamsu, J.
PDB entry 8vgl: CryoEM structure of Nav1.7 in complex with wild type Fab 7A9
Classification: TRANSPORT PROTEIN
Source organism: Aliarcobacter butzleri RM4018; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Jao, C.C., Arthur, C.P., Sudhamsu, J.
PDB entry 8vgm: CryoEM structure of Nav1.7 in complex with engineered conformationally rigid Fab 7A9.4DS
Classification: TRANSPORT PROTEIN
Source organism: Aliarcobacter butzleri RM4018; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Jao, C.C., Arthur, C.P., Sudhamsu, J.
PDB entry 8vgn: CryoEM structure of CD20 in complex with wild type Rituximab Fab
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Jao, C.C., Arthur, C.P., Sudhamsu, J.
PDB entry 8vgo: CryoEM structure of CD20 in complex with engineered conformationally rigid Rituximab.4DS Fab
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Jao, C.C., Arthur, C.P., Sudhamsu, J.
PDB entry 8vgp: CryoEM structure of Angiopoietin-2 in complex with engineered conformationally rigid Fab 5A12.6DS
Classification: CYTOKINE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Sudhamsu, J.
PDB entry 8vgq: CryoEM structure of GNE-1952-alkylated KRAS G12C in complex with engineered conformationally rigid Fab 2H11.4DS
Classification: ONCOPROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-12-27
Authors: Kung, J.E., Sudhamsu, J.
PDB entry 8vgr: Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
Classification: VIRUS
Source organism: Tulane virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-12-27
Authors: Sun, C., Jiang, W.