LiteFold/PDB huggingface dataset:
PDB entry 8toa: CryoEM structure of H7 hemagglutinin from A/Shanghai2/2013 H7N9 in complex with a human neutralizing antibody H7.HK2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/Shanghai/02/2013(H7N9))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2023-08-03
Authors: Morano, N.C., Becker, J.E., Wu, X., Shapiro, L.
PDB entry 8tob: Acinetobacter GP16 Type IV pilus
Classification: CELL ADHESION
Source organism: Acinetobacter genomosp. 16BJ
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2023-08-03
Authors: Meng, R., Xing, Z., Zhang, J.
PDB entry 8toc: Acinetobacter phage AP205
Classification: VIRUS/RNA
Source organism: Acinetobacter phage AP205; Bacteria abnormis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-08-03
Authors: Meng, R., Xing, Z., Chang, J., Zhang, J.
PDB entry 8toe: Escherichia coli RNA polymerase unwinding intermediate (I1c) at the lambda PR promoter
Classification: transcription/DNA
Source organism: Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-03
Authors: Darst, S.A., Saecker, R.M., Mueller, A.U.
PDB entry 8tof: Rpd3S bound to an H3K36Cme3 modified nucleosome
Classification: TRANSCRIPTION/DNA
Source organism: Saccharomyces cerevisiae; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-03
Authors: Markert, J.W., Vos, S.M., Farnung, L.
PDB entry 8toh: Cryo-EM structure of monomeric alpha-Klotho
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-08-03
Authors: Schnicker, N.J., Xu, Z., Mohammad, A., Gakhar, L., Huang, C.L.
PDB entry 8toi: nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (closed state)
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-08-03
Authors: Feng, Z., Accardi, A.
PDB entry 8tok: nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (open state)
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2023-08-03
Authors: Feng, Z., Accardi, A.
PDB entry 8tol: nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (open state)
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-08-03
Authors: Feng, Z., Accardi, A.
PDB entry 8tom: Escherichia coli RNA polymerase closed complex intermediate at the lambda PR promoter
Classification: transcription/DNA
Source organism: Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-03
Authors: Darst, S.A., Saecker, R.M., Mueller, A.U.
PDB entry 8ton: Crystal Structure of Engineered Mouse Protocadherin-15 EC3-EC7 Connection
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-08-03
Authors: De-la-Torre, P., Brower, J., Indzhykulian, A.
PDB entry 8too: Crystal structure of Epstein-Barr virus gp42 in complex with antibody 4C12
Classification: IMMUNE SYSTEM
Source organism: Epstein-Barr virus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-08-03
Authors: Bu, W., Kumar, A., Board, N., Kim, J., Dowdell, K., Zhang, S., Lei, Y., Hostal, A., Krogmann, T., Wang, Y., Pittaluga, S., Marcotrigiano, J., Cohen, J.I.
PDB entry 8top: Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-08-03
Authors: Zhou, T., Morano, N.C., Roark, R.S., Kwong, P.D.
PDB entry 8toq: ACE2-peptide 1 complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-03
Authors: Christie, M., Payne, R.J.
PDB entry 8tor: ACE2-peptide 2 complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-03
Authors: Christie, M., Payne, R.J.
PDB entry 8tos: ACE2-peptide 6 complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-08-03
Authors: Christie, M., Payne, R.
PDB entry 8tot: ACE2-peptide2 complex crystal form 2
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-03
Authors: Christie, M., Payne, R.J.
PDB entry 8tou: ACE2-peptide 2 complex crystal form 3
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-08-04
Authors: Franck, C., Payne, R.J., Christie, M.
PDB entry 8tov: HIV-CA Disulfide linked Hexamer bound to Quinazolin-4-one Scaffold inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-04
Authors: Goldstone, D.C., Barnett, M.J., Taka, J.R.H.
PDB entry 8tow: Structure of a mutated photosystem II complex reveals perturbation of the oxygen-evolving complex
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2023-08-04
Authors: Flesher, D.A., Liu, J., Wang, J., Gisriel, C.J., Yang, K.R., Batista, V.S., Debus, R.J., Brudvig, G.W.
PDB entry 8tox: Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Classification: VIRAL PROTEIN/ANTIVIRAL PROTEIN,IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-08-04
Authors: Wang, S., Kwong, P.D.
PDB entry 8toz: Class III PreQ1 riboswitch double mutant U8C/A85G
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-08-04
Authors: Srivastava, Y., Jenkins, J.L., Wedekind, J.E.
PDB entry 8tp1: ATP-2 state of Bcs1 (C7 symmetrized)
Classification: TRANSLOCASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-08-04
Authors: Zhan, J., Xia, D.
PDB entry 8tp2: H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting 1-1-1F05
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-04
Authors: Yang, Y.R., Han, J., Perrett, H.R., Ward, A.B.
PDB entry 8tp3: H1 hemagglutinin (NC99) in complex with RBS-targeting Fab 1-1-1F05
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus (A/New Caledonia/20/1999(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-08-04
Authors: Yang, Y.R., Han, J., Perrett, H.R., Ward, A.B.
PDB entry 8tp4: H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting Fab 1-1-1E04
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus (A/Singapore/1/1957(H2N2))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-04
Authors: Yang, Y.R., Han, J., Perrett, H.R., Ward, A.B.
PDB entry 8tp5: H1 hemagglutinin (NC99) in complex with RBS-targeting Fab 1-1-1E04
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus (A/New Caledonia/20/1999(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-04
Authors: Yang, Y.R., Han, J., Perrett, H.R., Ward, A.B.
PDB entry 8tp6: H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting Fab 4-1-1E02
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus (A/Singapore/1/1957(H2N2))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-04
Authors: Yang, Y.R., Han, J., Perrett, H.R., Ward, A.B.
PDB entry 8tp7: H2 hemagglutinin (A/Singapore/1/1957) in complex with Sa-targeting Fab 4-1-1G03
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus (A/Singapore/1/1957(H2N2))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-08-04
Authors: Yang, Y.R., Han, J., Perrett, H.R., Ward, A.B.
PDB entry 8tp8: Structure of the C. crescentus WYL-activator, DriD, bound to ssDNA and cognate DNA
Classification: TRANSCRIPTION/DNA
Source organism: Caulobacter vibrioides NA1000; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2023-08-04
Authors: Schumacher, M.A.
PDB entry 8tp9: H2 hemagglutinin (A/Singapore/1/1957) in complex with medial-junction-targeting Fab 2-2-1G06
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus (A/Singapore/1/1957(H2N2))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-04
Authors: Yang, Y.R., Han, J., Perrett, H.R., Ward, A.B.
PDB entry 8tpa: H1 hemagglutinin (NC99) in complex with medial-junction-targeting Fab 2-2-1G06
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus (A/New Caledonia/20/1999(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-08-04
Authors: Yang, Y.R., Han, J., Perrett, H.R., Ward, A.B.
PDB entry 8tpb: Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-08-04
Authors: Chua, T.K., Song, Y.
PDB entry 8tpc: Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-08-04
Authors: Chua, T.K., Song, Y.
PDB entry 8tpd: Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2023-08-04
Authors: Chua, T.K., Song, Y.
PDB entry 8tpe: Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-08-04
Authors: Chua, T.K., Song, Y.
PDB entry 8tpf: Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-08-04
Authors: Chua, T.K., Song, Y.
PDB entry 8tpg: Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.692 Å
Deposited: 2023-08-04
Authors: Chua, T.K., Song, Y.
PDB entry 8tph: Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2023-08-04
Authors: Chua, T.K., Song, Y.
PDB entry 8tpi: Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2023-08-04
Authors: Chua, T.K., Song, Y.
PDB entry 8tpj: Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2023-08-04
Authors: Sauer, P.V., Sutter, M., Cupellini, L.
PDB entry 8tpk: P6522 crystal form of C. crescentus DriD-ssDNA-DNA complex
Classification: TRANSCRIPTION/DNA
Source organism: Caulobacter vibrioides NA1000; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.46 Å
Deposited: 2023-08-04
Authors: Schumacher, M.A.
PDB entry 8tpl: ATP-2 state of Bcs1 (unsymmetrized)
Classification: TRANSLOCASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-08-04
Authors: Zhan, J., Xia, D.
PDB entry 8tpm: nhTMEM16 lipid scramblase in lipid nanodiscs with MSP1E3 scaffold protein in the absence of Ca2+
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-08-04
Authors: Feng, Z., Accardi, A.
PDB entry 8tpn: nhTMEM16 lipid scramblase in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+ (intermediate state)
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2023-08-04
Authors: Feng, Z., Accardi, A.
PDB entry 8tpo: nhTMEM16 R432A mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2023-08-04
Authors: Feng, Z., Accardi, A.
PDB entry 8tpp: nhTMEM16 R432A mutant in lipid nanodiscs with MSP2N2 scaffold protein in the presence of Ca2+
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2023-08-04
Authors: Feng, Z., Accardi, A.
PDB entry 8tpq: nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6)
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2023-08-04
Authors: Feng, Z., Accardi, A.
PDB entry 8tpr: nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (short TM6)
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2023-08-04
Authors: Feng, Z., Accardi, A.
PDB entry 8tps: nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (bent TM6)
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2023-08-04
Authors: Feng, Z., Accardi, A.
PDB entry 8tpt: nhTMEM16 A444P mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+ (long TM6/short TM6)
Classification: LIPID TRANSPORT
Source organism: Fusarium vanettenii 77-13-4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-08-04
Authors: Feng, Z., Accardi, A.
PDB entry 8tpu: Subtomogram averaged consensus structure of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytes
Classification: RIBOSOME
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-08-05
Authors: Anton, L., Cheng, W., Zhu, X., Ho, C.M.
PDB entry 8tpv: Structure of human hypoxanthine guanine phosphoribzosyltransferase in complex with [2S,4R]-4-Guanin-9-yl-2-(2-phosphonoethoxymethyl)-1-N-(3-phosphonopropionyl)pyrrolidine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2023-08-05
Authors: Guddat, L.W.
PDB entry 8tpw: Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: cis-oriented 1B2 and ACP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens; Saccharopolyspora erythraea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2023-08-05
Authors: Cogan, D.P., Soohoo, A.M., Chen, M., Brodsky, K.L., Liu, Y., Khosla, C.
PDB entry 8tpx: Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: trans-oriented 1B2 and ACP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens; Saccharopolyspora erythraea
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-05
Authors: Cogan, D.P., Soohoo, A.M., Chen, M., Brodsky, K.L., Liu, Y., Khosla, C.
PDB entry 8tpy: Structure of human hypoxanthine guanine phosphoribzosyltransferase in complex with [2S,4R] 4-Guanin-9-yl-2-hydroxymethyl-1-N-(3-phosphonopropionyl)pyrrolidine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-08-06
Authors: Guddat, L.W.
PDB entry 8tq0: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with (R)-Lipoic Acid
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-08-06
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8tq1: HIV-1 BG505 Env SOSIP in complex with bovine Fab Bess4 and non-human primate Fab RM20A3
Classification: VIRAL PROTEIN/Immune System
Source organism: Bos taurus; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-06
Authors: Ozorowski, G., Lee, W.H., Ward, A.B.
PDB entry 8tq2: Structure of the kinase lobe of human CDK8 kinase module
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-08-06
Authors: Chen, S.F., Chao, T.C., Kim, H.J., Tang, H.C., Khadka, S., Li, T., Murakami, K., Boyer, T.G., Tsai, K.L.
PDB entry 8tq4: Crystal structure of Fab M142 in complex with MHC-I (H2-Dd)
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.59 Å
Deposited: 2023-08-06
Authors: Jiang, J., Natarajan, K., Boyd, L.F., Margulies, D.H.
PDB entry 8tq5: Crystal structure of Fab DX17 in complex with MHC-I (HLA-B*44:05)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-08-06
Authors: Jiang, J., Natarajan, K., Boyd, L.F., Margulies, D.H.
PDB entry 8tq6: Crystal structure of Fab.B1.23.2 in complex with MHC-I (HLA-B*44:05)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-08-06
Authors: Jiang, J., Natarajan, K., Boyd, L.F., Margulies, D.H.
PDB entry 8tq7: Crystal structure of Fab.34.2.12 in complex with MHC-I (H2-Dd)
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-08-06
Authors: Jiang, J., Boyd, L.F., Natarajan, K., Margulies, D.H.
PDB entry 8tq8: Crystal structure of Fab.34.5.8 in complex with MHC-I (H2-Dd)
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-08-06
Authors: Jiang, J., Boyd, L.F., Natarajan, K., Margulies, D.H.
PDB entry 8tq9: Crystal structure of Fab.S19.8 in complex with MHC-I (H2-Dd)
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-08-06
Authors: Jiang, J., Boyd, L.F., Natarajan, K., Margulies, D.H.
PDB entry 8tqa: Crystal structure of Fab.28.14.8 in complex with MHC-I (H2-Db)
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-08-06
Authors: Jiang, J., Boyd, L.F., Natarajan, K., Margulies, D.H.
PDB entry 8tqb: mGluR3 in the presence of the agonist LY379268 and PAM VU6023326
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-06
Authors: Strauss, A., Levitz, J.
PDB entry 8tqc: Structure of the human CDK8 kinase module
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-08-06
Authors: Chen, S.F., Chao, T.C., Kim, H.J., Tang, H.C., Khadka, S., Li, T., Murakami, K., Boyer, T.G., Tsai, K.L.
PDB entry 8tqd: NF-Kappa-B1 Bound with a Covalent Inhibitor
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-08-07
Authors: Hilbert, B.J.
PDB entry 8tqe: XptA2 wild type
Classification: TOXIN
Source organism: Xenorhabdus nematophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-07
Authors: Martin, C.L., Binshtein, E.M., Aller, S.G.
PDB entry 8tqf: Crystal structure of Soybean SHMT8 in complex with PLP-glycine and diglutamylated 5-formyltetrahydrofolate
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-08-07
Authors: Owuocha, L.F., Beamer, L.J.
PDB entry 8tqg: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20419
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-07
Authors: Krieger, I.V., Sacchettini, J.C.
PDB entry 8tqh: MPI68 bound to Mpro of SARS-CoV-2
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-07
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8tqi: Hemagglutinin-neuraminidase from Human parainfluenza virus type 3: complex with rPIV3-23 and rPIV3-28 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human respirovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2023-08-07
Authors: Otrelo-Cardoso, A.R., Jardetzky, T.S.
PDB entry 8tqj: MPI57 bound to Mpro of SARS-CoV-2
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-07
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8tqk: Human parainfluenza virus type 3 prefusion F trimer in complex with rPIV3-18 Fab
Classification: VIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens; Human respirovirus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-07
Authors: Otrelo-Cardoso, A.R., Jardetzky, T.S.
PDB entry 8tql: MPI54 bound to Mpro of SARS-CoV-2
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-07
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8tqm: Cryo-EM structure of E3 ubiquitin ligase Doa10 from Saccharomyces cerevisiae
Classification: LIGASE
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-07
Authors: Park, E., Itskanov, S.I.
PDB entry 8tqn: Crystal Structure of a MES bound Substrate Binding Protein (IseP) from an Isethionate TRAP Transporter
Classification: TRANSPORT PROTEIN
Source organism: Oleidesulfovibrio alaskensis G20
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-08-08
Authors: Newton-Vesty, M.C., Dobson, R.C.J.
PDB entry 8tqo: Eukaryotic translation initiation factor 2B tetramer
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-08
Authors: Wang, L., Lawrence, R., Sangwan, S., Anand, A., Shoemaker, S., Deal, A., Marqusee, S., Watler, P.
PDB entry 8tqp: HIV-CA Disulfide linked Hexamer bound to Quinazolin-4-one Scaffold inhibitor
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-08-08
Authors: Goldstone, D.C., Barnett, M.J., Taka, J.R.H.
PDB entry 8tqs: Complex of human thrombin (S195A) bound to a bivalent inhibitor comprised of DNA Aptamer HD22 conjugated to Dabigatran with a linker.
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.207 Å
Deposited: 2023-08-08
Authors: Krishnaswamy, S., Kumar, S.
PDB entry 8tqt: MPI52 bound to Mpro of SARS-CoV-2
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-08-08
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8tqu: MPI51 bound to Mpro of SARS-CoV-2
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-08-08
Authors: Blankenship, L.R., Liu, W.R.
PDB entry 8tqv: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20403
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-08-08
Authors: Krieger, I.V., Sacchettini, J.C.
PDB entry 8tqw: Structure of human transcriptional Mediator complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.2 Å
Deposited: 2023-08-08
Authors: Chen, S.F., Chao, T.C., Kim, H.J., Tang, H.C., Khadka, S., Li, T., Murakami, K., Boyer, T.G., Tsai, K.L.
PDB entry 8tqx: Crystal structure of the Zika virus stem-loop A (SLA) bottom stem
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-08-08
Authors: Tipo, J., Gottipati, K., Choi, K.H.
PDB entry 8tqz: Eukaryotic translation initiation factor 2B with a mutation (L516A) in the delta subunit
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-08-08
Authors: Wang, L., Lawrence, R., Sangwan, S., Anand, A., Shoemaker, S., Deal, A., Marqusee, S., Watler, P.
PDB entry 8tr0: Metabotropic glutamate receptor 3 class 3 bound to antagonist LY 341495
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-09
Authors: Strauss, A., Levitz, J.
PDB entry 8tr1: Crystal structure of trypanosome brucei hypoxanthine guanine phosphopribosyltransferase in complex with [2S,4R]-4-Guanin-9-yl-2-(2- phosphonoethoxymethyl)-1-N-(3-phosphonopropionyl)pyrrolidine
Classification: TRANSFERASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-08-09
Authors: Guddat, L.W.
PDB entry 8tr2: mGluR3 in the presence of the agonist LY379268
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-08-09
Authors: Strauss, A., Levitz, J.
PDB entry 8tr3: Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.74 Å
Deposited: 2023-08-09
Authors: Chan, K.-W., Kong, X.P.
PDB entry 8tr4: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20404
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-09
Authors: Krieger, I.V., Sacchettini, J.C.
PDB entry 8tr5: Cryo-EM structure of the rat P2X7 receptor in the apo closed state
Classification: MEMBRANE PROTEIN
Source organism: Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-08-09
Authors: Oken, A.C., Lisi, N.E., Krishnamurthy, I., McCarthy, A.E., Godsey, M.H., Glasfeld, A., Mansoor, S.E.
PDB entry 8tr6: Cryo-EM structure of the rat P2X7 receptor in complex with the allosteric antagonist A438079
Classification: MEMBRANE PROTEIN
Source organism: Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Deposited: 2023-08-09
Authors: Oken, A.C., Ditter, I.A., Lisi, N.E., Krishnamurthy, I., McCarthy, A.E., Godsey, M.H., Mansoor, S.E.
PDB entry 8tr7: Cryo-EM structure of the rat P2X7 receptor in complex with the allosteric antagonist A839977
Classification: MEMBRANE PROTEIN
Source organism: Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-08-09
Authors: Oken, A.C., Ditter, I.A., Lisi, N.E., Krishnamurthy, I., McCarthy, A.E., Godsey, M.H., Mansoor, S.E.
PDB entry 8tr8: Cryo-EM structure of the rat P2X7 receptor in complex with the allosteric antagonist AZD9056
Classification: MEMBRANE PROTEIN
Source organism: Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Deposited: 2023-08-09
Authors: Oken, A.C., Ditter, I.A., Lisi, N.E., Krishnamurthy, I., McCarthy, A.E., Godsey, M.H., Mansoor, S.E.
PDB entry 8tr9: Cryo-EM structure of transglutaminase 2 bound to GDP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-08-09
Authors: Aplin, C., Cerione, R.A.
PDB entry 8tra: Cryo-EM structure of the rat P2X7 receptor in complex with the allosteric antagonist GSK1482160
Classification: MEMBRANE PROTEIN
Source organism: Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2023-08-09
Authors: Oken, A.C., Ditter, I.A., Lisi, N.E., Krishnamurthy, I., McCarthy, A.E., Godsey, M.H., Mansoor, S.E.
PDB entry 8trb: Cryo-EM structure of the rat P2X7 receptor in complex with the allosteric antagonist JNJ47965567
Classification: MEMBRANE PROTEIN
Source organism: Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2023-08-09
Authors: Oken, A.C., Ditter, I.A., Lisi, N.E., Krishnamurthy, I., McCarthy, A.E., Godsey, M.H., Mansoor, S.E.
PDB entry 8trc: mGluR3 in the presence of the antagonist LY 341495 and positive allosteric modulator VU6023326
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-08-09
Authors: Strauss, A., Levitz, J.
PDB entry 8trd: mGluR3 class 1 in the presence of the antagonist LY 341495
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-09
Authors: Strauss, A., Levitz, J.
PDB entry 8trf: Crystal structure of SM0281, an alpha/beta hydrolase from Sinorhizobium meliloti
Classification: HYDROLASE
Source organism: Rhizobium meliloti (strain 1021)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2023-08-09
Authors: Stogios, P.J., Evdokimova, E., Lemak, S., Edwards, E., Yakunin, A., Savchenko, A.
PDB entry 8trg: Structure of full-length LexA bound to a RecA filament
Classification: SIGNALING PROTEIN/DNA
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2023-08-09
Authors: Cory, M.B., Li, A., Kohli, R.M.
PDB entry 8trh: The IDRc bound human core Mediator complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-08-09
Authors: Chen, S.F., Chao, T.C., Kim, H.J., Tang, H.C., Khadka, S., Li, T., Murakami, K., Boyer, T.G., Tsai, K.L.
PDB entry 8tri: Crystal Structure of Mouse Cadherin-23 EC25-MAD28 F2894A
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.716 Å
Deposited: 2023-08-09
Authors: Ashraf, Q., Sotomayor, M.
PDB entry 8trj: Cryo-EM structure of the rat P2X7 receptor in complex with the high-affinity agonist BzATP
Classification: MEMBRANE PROTEIN
Source organism: Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2023-08-09
Authors: Oken, A.C., Lisi, N.E., Krishnamurthy, I., McCarthy, A.E., Godsey, M.H., Glasfeld, A., Mansoor, S.E.
PDB entry 8trk: Cryo-EM structure of the rat P2X7 receptor in complex with the allosteric antagonist methyl blue
Classification: MEMBRANE PROTEIN
Source organism: Rattus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2023-08-09
Authors: Oken, A.C., Ditter, I.A., Lisi, N.E., Krishnamurthy, I., McCarthy, A.E., Godsey, M.H., Mansoor, S.E.
PDB entry 8trl: T cell recognition of citrullinated alpha-enolase peptide presented by HLA-DR4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2023-08-09
Authors: Lim, J.J., Loh, T.J., Reid, H.H., Rossjohn, J.
PDB entry 8trm: Actin 1 from T. gondii in filaments bound to MgADP
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-08-09
Authors: Hvorecny, K.L., Sladewski, T.E., Heaslip, A.T., Kollman, J.M.
PDB entry 8trn: Actin 1 from T. gondii in filaments bound to MgADP and jasplakinolide
Classification: STRUCTURAL PROTEIN
Source organism: Toxoplasma gondii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-08-09
Authors: Hvorecny, K.L., Sladewski, T.E., Heaslip, A.T., Kollman, J.M.
PDB entry 8tro: Rod from high-resolution phycobilisome quenched by OCP (local refinement)
Classification: PHOTOSYNTHESIS
Source organism: Synechocystis sp. PCC 6803
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2023-08-09
Authors: Sauer, P.V., Sutter, M., Cupellini, L.
PDB entry 8trp: Structure of a HEPES bound TRAP transporter substrate binding protein.
Classification: TRANSPORT PROTEIN
Source organism: Oleidesulfovibrio alaskensis G20
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2023-08-10
Authors: Newton-Vesty, M.C., Dobson, R.C.J.
PDB entry 8trq: T cell recognition of citrullinated vimentin peptide presented by HLA-DR4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2023-08-10
Authors: Loh, T.J., Lim, J.J., Reid, H.H., Rossjohn, J.
PDB entry 8trr: T cell recognition of citrullinated vimentin peptide presented by HLA-DR4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-08-10
Authors: Loh, T.J., Lim, J.J., Reid, H.H., Rossjohn, J.
PDB entry 8trs: Structure of the EphA2 CRD bound to FabS1CE_C1, trigonal form
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-10
Authors: Singer, A.U., Bruce, H.A., Blazer, L., Adams, J.J., Sicheri, F., Sidhu, S.S.
PDB entry 8trt: Structure of the EphA2 CRD bound to FabS1CE_C1, monoclinic form
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-08-10
Authors: Singer, A.U., Bruce, H.A., Blazer, L., Adams, J.J., Sicheri, F., Sidhu, S.S.
PDB entry 8tru: Crystal structure of a CE15 from Fibrobacter succinogenes subsp. succinogenes S85
Classification: HYDROLASE
Source organism: Fibrobacter succinogenes subsp. succinogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-08-10
Authors: Gruninger, R.J., Jones, D.R.
PDB entry 8trv: Structure of the EphA2 LBDCRD bound to FabS1C_C1
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2023-08-10
Authors: Singer, A.U., Bruce, H.A., Blazer, L., Adams, J.J., Sicheri, F., Sidhu, S.S.
PDB entry 8trw: Structure of human LIAS
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2023-08-10
Authors: Esakova, O.A., Warui, D.M., Neti, S.S., Alumasa, J.N., Booker, S.J.
PDB entry 8trx: Crystal structure of a CE15 glucuronoyl esterase from Piromyces rhizinflatus
Classification: HYDROLASE
Source organism: Piromyces rhizinflatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2023-08-10
Authors: Gruninger, R.J., Jones, D.R.
PDB entry 8try: Crystal Structure of Mtb Pks13 Thioesterase domain in complex with inhibitor X20348
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-08-10
Authors: Krieger, I.V., Sacchettini, J.C.
PDB entry 8trz: Cryo-EM structure of N-glycosylated Pomacea canaliculata hemocyanin
Classification: OXYGEN TRANSPORT
Source organism: Pomacea canaliculata
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-08-10
Authors: Brola, T.R., Chiumiento, I.R., Gragera, M., Carazo, J.M., Heras, H., Dreon, M.S., Otero, L.H.
PDB entry 8ts0: Crystal Structure of human ASGR1 CRD (Carbohydrate Recognition Domain) bound to 8M24 Fab
Classification: SUGAR BINDING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-08-10
Authors: Sampathkumar, P., Li, Y.
PDB entry 8ts1: Cryo-EM structure of human MRS2 with Mg2+
Classification: METAL TRANSPORT
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2023-08-10
Authors: He, Z., Mount, J.W., Zhang, J., Yuan, P.
PDB entry 8ts2: Cryo-EM structure of human MRS2 with EDTA
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2023-08-10
Authors: He, Z., Mount, J.W., Zhang, J., Yuan, P.
PDB entry 8ts3: Cryo-EM structure of human MRS2 with Ca2+
Classification: METAL TRANSPORT
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2023-08-10
Authors: He, Z., Mount, J.W., Zhang, J., Yuan, P.
PDB entry 8ts4: Crystal structure of T. Brucei hypoxanthine guanine phosphoribosyltransferase in complex with [2S,4S]-4-Guanin-9-yl-2-(2-phosphonoethoxymethyl)-1-N-(3-phosphonopropionyl)pyrrolidine
Classification: TRANSFERASE
Source organism: Trypanosoma brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-08-10
Authors: Guddat, L.W., Guddat, L.W.
PDB entry 8ts5: Structure of the apo FabS1C_C1
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-08-10
Authors: Singer, A.U., Bruce, H.A., Blazer, L.L., Adams, J.J., Sicheri, F., Sidhu, S.S.
PDB entry 8ts6: Cyanophage A-1(L) portal
Classification: VIRAL PROTEIN
Source organism: uncultured cyanophage
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-08-11
Authors: Yu, R.C., Li, Q., Zhou, C.Z.
PDB entry 8ts7: Human PI3K p85alpha/p110alpha
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2023-08-11
Authors: Holliday, M., Tang, Y., Bulku, A., Wilbur, J., Fraser, J.
PDB entry 8ts8: p85alpha/p110alpha heterodimer H1047R mutant
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2023-08-11
Authors: Holliday, M., Tang, Y., Bulku, A., Wilbur, J., Fraser, J.
PDB entry 8ts9: Human PI3K p85alpha/p110alpha H1047R bound to compound 1
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2023-08-11
Authors: Holliday, M., Tang, Y., Bulku, A., Wilbur, J., Fraser, J.
PDB entry 8tsa: Human PI3K p85alpha/p110alpha H1047R bound to compound 2
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2023-08-11
Authors: Holliday, M., Tang, Y., Bulku, A., Wilbur, J., Fraser, J., Valverde, R.
PDB entry 8tsb: Human PI3K p85alpha/p110alpha bound to compound 2
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.53 Å
Deposited: 2023-08-11
Authors: Holliday, M., Tang, Y., Bulku, A., Wilbur, J., Fraser, J.
PDB entry 8tsc: Human PI3K p85alpha/p110alpha H1047R bound to compound 3
Classification: SIGNALING PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.62 Å
Deposited: 2023-08-11
Authors: Holliday, M., Tang, Y., Bulku, A., Wilbur, J., Fraser, J.
PDB entry 8tsd: Human PI3K p85alpha/p110alpha bound to RLY-2608
Classification: SIGNALING PROTEIN,TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-08-11
Authors: Holliday, M., Tang, Y., Bulku, A., Wilbur, J., Fraser, J.
PDB entry 8tse: Crystal structure of a CE15 glucuronoyl esterase from Ruminococcus flavefaciens
Classification: HYDROLASE
Source organism: Ruminococcus flavefaciens 17
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-08-11
Authors: Gruninger, R.J., Jones, D.R.
PDB entry 8tsh: S. thermodepolymerans KpsMT(E151Q)-KpsE in complex with ATP
Classification: MEMBRANE PROTEIN
Source organism: Caldimonas thermodepolymerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-11
Authors: Kuklewicz, J., Zimmer, J.
PDB entry 8tsi: S. thermodepolymerans KpsMT-KpsE in complex with ADP:AlF4-
Classification: MEMBRANE PROTEIN
Source organism: Caldimonas thermodepolymerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-08-11
Authors: Kuklewicz, J., Zimmer, J.
PDB entry 8tsk: Structure of human LIAS in the presence of 5'-deoxyadenosine and octanoyl-modified peptide
Classification: BIOSYNTHETIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2023-08-11
Authors: Esakova, O.A., Warui, D.M., Neti, S.S., Alumasa, J.N., Booker, S.J.
PDB entry 8tsl: S. thermodepolymerans KpsM-KpsE in Apo 2 state with rigid body fitted KpsT
Classification: MEMBRANE PROTEIN
Source organism: Caldimonas thermodepolymerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-11
Authors: Kuklewicz, J., Zimmer, J.
PDB entry 8tsm: Crystal structure of chicken Netrin-1 LN LE1-2
Classification: SIGNALING PROTEIN
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å
Deposited: 2023-08-11
Authors: Heide, F., Rafiei, F., Stetefeld, J.
PDB entry 8tso: KDL bound, nucleotide-free MsbA in open, outward-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-08-11
Authors: Yang, B., Zhang, T., Lyu, J., Laganowsky, A.D., Zhao, M.
PDB entry 8tsp: Open, inward-facing MsbA structure (OIF1)
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-08-11
Authors: Yang, B., Zhang, T., Lyu, J., Laganowsky, A.D., Zhao, M.
PDB entry 8tsq: Open, inward-facing MsbA structure (OIF2)
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-08-11
Authors: Yang, B., Zhang, T., Lyu, J., Laganowsky, A.D., Zhao, M.
PDB entry 8tsr: Open, inward-facing MsbA structure (OIF4)
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2023-08-11
Authors: Yang, B., Zhang, T., Lyu, J., Laganowsky, A.D., Zhao, M.
PDB entry 8tss: Open, inward-facing MsbA structure (OIF3)
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-08-11
Authors: Yang, B., Zhang, T., Lyu, J., Laganowsky, A.D., Zhao, M.
PDB entry 8tsu: Pseudomonas fluorescens G150T-1 isocyanide hydratase at 274 K
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2023-08-11
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tsv: Crystal structure of the Zika virus stem-loop A (SLA) top stem
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2023-08-11
Authors: Tipo, J., Gottipati, K., Choi, K.H.
PDB entry 8tsw: S. thermodepolymerans KpsMT-KpsE Apo 1
Classification: MEMBRANE PROTEIN
Source organism: Caldimonas thermodepolymerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-08-12
Authors: Kuklewicz, J., Zimmer, J.
PDB entry 8tsx: Pseudomonas fluorescens G150T isocyanide hydratase at 100 K
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2023-08-12
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tsy: Pseudomonas fluorescens G150T-2 isocyanide hydratase at 274 K
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-08-12
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tsz: Pseudomonas fluorescens G150T-3 isocyanide hydratase at 274 K
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2023-08-12
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tt0: Pseudomonas fluorescens isocyanide hydratase pH=4.2
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-08-12
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tt1: Pseudomonas fluorescens isocyanide hydratase pH=5.0
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-08-12
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tt2: Pseudomonas fluorescens isocyanide hydratase pH=5.4
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2023-08-12
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tt3: S. thermodepolymerans KpsM-KpsE in Glycolipid 2 state with rigid body fitted KpsT
Classification: MEMBRANE PROTEIN
Source organism: Caldimonas thermodepolymerans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-08-12
Authors: Kuklewicz, J., Zimmer, J.
PDB entry 8tt4: Pseudomonas fluorescens isocyanide hydratase pH=6.0
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-08-12
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tt5: Pseudomonas fluorescens isocyanide hydratase pH=8.3
Classification: LYASE
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2023-08-12
Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.
PDB entry 8tt7: NMR Assignments and Structure for the Dimeric Kinesin Neck Domain
Classification: MOTOR PROTEIN
Source organism: Rattus norvegicus
Experimental method: SOLUTION NMR
Deposited: 2023-08-12
Authors: Alexandrescu, A.T.