LiteFold/PDB huggingface dataset:
PDB entry 3wbh: Structural characteristics of alkaline phosphatase from a moderately halophilic bacteria Halomonas sp.593
Classification: HYDROLASE
Source organism: Halomonas
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2013-05-17
Authors: Arai, S., Yonezawa, Y., Ishibashi, M., Matsumoto, F., Tamada, T., Tokunaga, H., Tokunaga, M., Kuroki, R.
PDB entry 3wbi: Crystal structure analysis of eukaryotic translation initiation factor 5B structure I
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2013-05-20
Authors: Zheng, A., Yamamoto, R., Ose, T., Yu, J., Tanaka, I., Yao, M.
PDB entry 3wbj: Crystal structure analysis of eukaryotic translation initiation factor 5B structure II
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.495 Å
Deposited: 2013-05-20
Authors: Zheng, A., Yamamoto, R., Ose, T., Yu, J., Tanaka, I., Yao, M.
PDB entry 3wbk: crystal structure analysis of eukaryotic translation initiation factor 5B and 1A complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2013-05-20
Authors: Zheng, A., Yamamoto, R., Ose, T., Yu, J., Tanaka, I., Yao, M.
PDB entry 3wbl: Crystal structure of CDK2 in complex with pyrazolopyrimidine inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-05-20
Authors: Fujino, A., Fukushima, K., Kubota, T., Kosugi, T., Takimoto-Kamimura, M.
PDB entry 3wbm: Crystal Structure of protein-RNA complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Sulfolobus shibatae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-05-20
Authors: Ding, J., Wang, D.C.
PDB entry 3wbn: Crystal structure of MATE in complex with MaL6
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Pyrococcus furiosus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2013-05-20
Authors: Tanaka, Y., Ishitani, R., Nureki, O.
PDB entry 3wbo: Crystal Structure Analysis of the Z-DNA hexamer CGCGCG with 40 mM NaCl
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2013-05-20
Authors: Chatake, T.
PDB entry 3wbp: Crystal structure of carbohydrate recognition domain of Blood Dendritic Cell Antigen-2 (BDCA2) lectin (crystal form-1)
Classification: Carbohydrate Binding Protein
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-05-20
Authors: Nagae, M., Ikeda, A., Kitago, Y., Matsumoto, N., Yamamoto, K., Yamaguchi, Y.
PDB entry 3wbq: Crystal structure of carbohydrate recognition domain of Blood Dendritic Cell Antigen-2 (BDCA2) lectin (crystal form-2)
Classification: Carbohydrate Binding Protein
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-05-20
Authors: Nagae, M., Ikeda, A., Kitago, Y., Matsumoto, N., Yamamoto, K., Yamaguchi, Y.
PDB entry 3wbr: Crystal structure of carbohydrate recognition domain of Blood Dendritic Cell Antigen-2 (BDCA2) lectin (crystal form-3)
Classification: Carbohydrate Binding Protein
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-05-20
Authors: Nagae, M., Ikeda, A., Kitago, Y., Matsumoto, N., Yamamoto, K., Yamaguchi, Y.
PDB entry 3wbw: Crystal structure of Gox0644 in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2013-05-22
Authors: Yuan, Y.A., Wang, C.
PDB entry 3wbx: Crystal structure of Gox0644 at apoform
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-05-22
Authors: Yuan, Y.A., Wang, C.
PDB entry 3wby: Crystal structure of Gox0644 D53A mutant in complex with NADPH
Classification: OXIDOREDUCTASE
Source organism: Gluconobacter oxydans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2013-05-22
Authors: Yuan, Y.A., Wang, C.
PDB entry 3wbz: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with ATP
Classification: TRANSFERASE
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.392 Å
Deposited: 2013-05-24
Authors: Nakamura, A., Nemoto, T., Sonoda, T., Yamashita, K., Tanaka, I., Yao, M.
PDB entry 3wc0: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with GTP
Classification: TRANSFERASE
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.03 Å
Deposited: 2013-05-24
Authors: Nakamura, A., Nemoto, T., Sonoda, T., Yamashita, K., Tanaka, I., Yao, M.
PDB entry 3wc1: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a G-1 deleted tRNA(His)
Classification: TRANSFERASE/RNA
Source organism: Candida albicans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4.18 Å
Deposited: 2013-05-24
Authors: Nakamura, A., Nemoto, T., Sonoda, T., Yamashita, K., Tanaka, I., Yao, M.
PDB entry 3wc2: Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)
Classification: TRANSFERASE/RNA
Source organism: Candida albicans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.641 Å
Deposited: 2013-05-24
Authors: Nakamura, A., Nemoto, T., Sonoda, T., Yamashita, K., Tanaka, I., Yao, M.
PDB entry 3wc3: Crystal structure of endo-1,4-beta-glucanase from Eisenia fetida
Classification: HYDROLASE
Source organism: Eisenia fetida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2013-05-24
Authors: Arimori, T., Tamada, T.
PDB entry 3wc4: Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea
Classification: TRANSFERASE
Source organism: Clitoria ternatea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2013-05-24
Authors: Hiromoto, T., Honjo, E., Tamada, T., Kuroki, R.
PDB entry 3wc5: Carboxypeptidase B in complex with DD9
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-05-24
Authors: Yoshimoto, N., Itoh, T., Inaba, Y., Yamamoto, K.
PDB entry 3wc6: Carboxypeptidase B in complex with 2nd zinc
Classification: HYDROLASE
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2013-05-24
Authors: Yoshimoto, N., Itoh, T., Inaba, Y., Yamamoto, K.
PDB entry 3wc7: Carboxypeptidase B in complex with EF6265
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-05-24
Authors: Yoshimoto, N., Itoh, T., Inaba, Y., Yamamoto, K.
PDB entry 3wc8: Dimeric horse cytochrome c obtained by refolding with desalting method
Classification: ELECTRON TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-05-25
Authors: Parui, P.P., Deshpande, M.S., Nagao, S., Kamikubo, H., Komori, H., Higuchi, Y., Kataoka, M., Hirota, S.
PDB entry 3wc9: The complex structure of HsSQS wtih ligand, FSPP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2013-05-26
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wca: The complex structure of TcSQS with ligand, FSPP
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2013-05-26
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Oldfield, E., Guo, R.T.
PDB entry 3wcb: The complex structure of TcSQS with ligand, BPH1237
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wcc: The complex structure of TcSQS with ligand, E5700
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wcd: The complex structure of HsSQS wtih ligand, WC-9
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wce: The complex structure of TcSQS with ligand, ER119884
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wcf: The complex structure of HsSQS wtih ligand,BPH1218
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wcg: The complex structure of TcSQS with ligand, BPH1344
Classification: TRANSFERASE
Source organism: Trypanosoma cruzi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wch: The complex structure of HsSQS wtih ligand BPH1237
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wci: The complex structure of HsSQS wtih ligand,BPH1325
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wcj: The complex structure of HsSQS wtih ligand,E5700
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-05-27
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wck: Crystal structure of monomeric photosensitizing fluorescent protein, Supernova
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-05-27
Authors: Sakai, N., Matsuda, T., Takemoto, K., Nagai, T.
PDB entry 3wcl: The complex structure of HsSQS wtih ligand,BPH1344
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2013-05-28
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wcm: The complex structure of HsSQS wtih ligand, ER119884
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2013-05-28
Authors: Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.
PDB entry 3wcn: Crystal structure of the depentamerized mutant of selenocysteine synthase SelA
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2013-05-29
Authors: Itoh, Y., Sekine, S., Yokoyama, S.
PDB entry 3wco: Crystal structure of the depentamerized mutant of N-terminal truncated selenocysteine synthase SelA
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-05-29
Authors: Itoh, Y., Sekine, S., Yokoyama, S.
PDB entry 3wcp: Deoxyhemoglobin SH-drug complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2013-05-30
Authors: Safo, M.K., Ko, T.P.
PDB entry 3wcq: Crystal structure analysis of Cyanidioschyzon melorae ferredoxin D58N mutant
Classification: ELECTRON TRANSPORT
Source organism: Cyanidioschyzon merolae
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2013-05-31
Authors: Ueno, Y., Matsumoto, T., Yamano, A., Imai, T., Morimoto, Y.
PDB entry 3wcr: Crystal structure of plant lectin (ligand-free form)
Classification: SUGAR BINDING PROTEIN
Source organism: Phaseolus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2013-05-31
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 3wcs: Crystal structure of plant lectin (ligand-bound form)
Classification: SUGAR BINDING PROTEIN
Source organism: Phaseolus vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2013-05-31
Authors: Nagae, M., Yamaguchi, Y.
PDB entry 3wct: The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Oxygenated form
Classification: OXYGEN TRANSPORT
Source organism: Lamellibrachia satsuma
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-06-01
Authors: Numoto, N., Nakagawa, T., Ohara, R., Hasegawa, T., Kita, A., Yoshida, T., Maruyama, T., Imai, K., Fukumori, Y., Miki, K.
PDB entry 3wcu: The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Deoxygenated form
Classification: OXYGEN TRANSPORT
Source organism: Lamellibrachia satsuma
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2013-06-01
Authors: Numoto, N., Nakagawa, T., Ohara, R., Hasegawa, T., Kita, A., Yoshida, T., Maruyama, T., Imai, K., Fukumori, Y., Miki, K.
PDB entry 3wcv: The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: CA bound form
Classification: OXYGEN TRANSPORT
Source organism: Lamellibrachia satsuma
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-06-01
Authors: Numoto, N., Nakagawa, T., Ohara, R., Hasegawa, T., Kita, A., Yoshida, T., Maruyama, T., Imai, K., Fukumori, Y., Miki, K.
PDB entry 3wcw: The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: MG bound form
Classification: OXYGEN TRANSPORT
Source organism: Lamellibrachia satsuma
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-06-01
Authors: Numoto, N., Nakagawa, T., Ohara, R., Hasegawa, T., Kita, A., Yoshida, T., Maruyama, T., Imai, K., Fukumori, Y., Miki, K.
PDB entry 3wcy: Murine Ifnar1 in complex with interferon-beta
Classification: CYTOKINE RECEPTOR/CYTOKINE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2013-06-04
Authors: Vivian, J.P., de Weerd, N.A., Hertzog, P.J., Rossjohn, J.
PDB entry 3wcz: Crystal structure of Bombyx mori aldo-keto reductase (AKR2E4) in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2013-06-05
Authors: Yamamoto, K., Wilson, D.K.
PDB entry 3wd0: Serratia marcescens Chitinase B, tetragonal form
Classification: HYDROLASE
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-06-06
Authors: Hirose, T., Maita, N., Gouda, H., Koseki, J., Yamamoto, T., Sugawara, A., Nakano, H., Hirono, S., Shiomi, K., Watanabe, T., Taniguchi, H., Sharpless, K.B., Omura, S., Sunazuka, T.
PDB entry 3wd1: Serratia marcescens Chitinase B complexed with syn-triazole inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-06-06
Authors: Hirose, T., Maita, N., Gouda, H., Koseki, J., Yamamoto, T., Sugawara, A., Nakano, H., Hirono, S., Shiomi, K., Watanabe, T., Taniguchi, H., Sharpless, K.B., Omura, S., Sunazuka, T.
PDB entry 3wd2: Serratia marcescens Chitinase B complexed with azide inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-06-06
Authors: Hirose, T., Maita, N., Gouda, H., Koseki, J., Yamamoto, T., Sugawara, A., Nakano, H., Hirono, S., Shiomi, K., Watanabe, T., Taniguchi, H., Sharpless, K.B., Omura, S., Sunazuka, T.
PDB entry 3wd3: Serratia marcescens Chitinase B complexed with azide inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-06-06
Authors: Hirose, T., Maita, N., Gouda, H., Koseki, J., Yamamoto, T., Sugawara, A., Nakano, H., Hirono, S., Shiomi, K., Watanabe, T., Taniguchi, H., Sharpless, K.B., Omura, S., Sunazuka, T.
PDB entry 3wd4: Serratia marcescens Chitinase B complexed with azide inhibitor and quinoline compound
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Serratia marcescens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-06-06
Authors: Hirose, T., Maita, N., Gouda, H., Koseki, J., Yamamoto, T., Sugawara, A., Nakano, H., Hirono, S., Shiomi, K., Watanabe, T., Taniguchi, H., Sharpless, K.B., Omura, S., Sunazuka, T.
PDB entry 3wd5: Crystal structure of TNFalpha in complex with Adalimumab Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.101 Å
Deposited: 2013-06-06
Authors: Hu, S., Liang, S.Y., Guo, Y.J., Lou, Z.Y.
PDB entry 3wd6: Crystal structure of Bombyx mori omega-class glutathione transferase in complex with GSH
Classification: TRANSFERASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-06-07
Authors: Yamamoto, K., Suzuki, M., Higashiura, A., Nakagawa, A.
PDB entry 3wd7: Type III polyketide synthase
Classification: TRANSFERASE
Source organism: Citrus microcarpa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2013-06-10
Authors: Mori, T., Shimokawa, Y., Matsui, T., Kato, R., Sugio, S., Morita, H., Abe, I.
PDB entry 3wd8: TypeIII polyketide synthases
Classification: TRANSFERASE
Source organism: Citrus microcarpa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.463 Å
Deposited: 2013-06-10
Authors: Mori, T., Shimokawa, Y., Matsui, T., Morita, H., Abe, I.
PDB entry 3wd9: Crystal structure of phosphodiesterase 4B in complex with compound 10f
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-06-11
Authors: Takahashi, M., Hanzawa, H.
PDB entry 3wdb: N-terminal domain of Mycobacterium tuberculosis ClpC1
Classification: CHAPERONE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2013-06-14
Authors: Vasudevan, D., Noble, C.G.
PDB entry 3wdc: N-terminal domain of Mycobacterium tuberculosis ClpC1 bound to Cyclomarin A
Classification: Chaperone/Antimicrobial protein
Source organism: Mycobacterium tuberculosis; Streptomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2013-06-14
Authors: Vasudevan, D., Noble, C.G.
PDB entry 3wdd: Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F2Y, bound to Cyclomarin A
Classification: Chaperone/Antimicrobial protein
Source organism: Mycobacterium tuberculosis; Streptomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2013-06-14
Authors: Vasudevan, D., Noble, C.G.
PDB entry 3wde: Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F80Y, bound to Cyclomarin A
Classification: Chaperone/Antimicrobial protein
Source organism: Mycobacterium tuberculosis; Streptomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2013-06-14
Authors: Vasudevan, D., Noble, C.G.
PDB entry 3wdf: Staphylococcus aureus UDG
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2013-06-18
Authors: Wang, H.C., Ko, T.P., Wang, A.H.J.
PDB entry 3wdg: Staphylococcus aureus UDG / UGI complex
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-06-18
Authors: Wang, H.C., Ko, T.P., Wang, A.H.J.
PDB entry 3wdh: Crystal structure of Pullulanase from Anoxybacillus sp. LM18-11
Classification: HYDROLASE
Source organism: Anoxybacillus sp. LM18-11
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2013-06-18
Authors: Xu, J., Ren, F., Huang, C.H., Zheng, Y., Zhen, J., Ko, T.P., Chen, C.C., Chan, H.C., Guo, R.T., Ma, Y., Song, H.
PDB entry 3wdi: Crystal structure of Pullulanase complexed with maltotriose from Anoxybacillus sp. LM18-11
Classification: HYDROLASE
Source organism: Anoxybacillus sp. LM18-11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-06-18
Authors: Xu, J., Ren, F., Huang, C.H., Zheng, Y., Zhen, J., Ko, T.P., Chen, C.C., Chan, H.C., Guo, R.T., Ma, Y., Song, H.
PDB entry 3wdj: Crystal structure of Pullulanase complexed with maltotetraose from Anoxybacillus sp. LM18-11
Classification: HYDROLASE
Source organism: Anoxybacillus sp. LM18-11
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2013-06-18
Authors: Xu, J., Ren, F., Huang, C.H., Zheng, Y., Zhen, J., Ko, T.P., Chen, C.C., Chan, H.C., Guo, R.T., Ma, Y., Song, H.
PDB entry 3wdk: Crystal structure of 4-phosphopantoate-beta-alanine ligase complexed with reaction intermediate
Classification: LIGASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-06-19
Authors: Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
PDB entry 3wdl: Crystal structure of 4-phosphopantoate-beta-alanine ligase complexed with ATP
Classification: LIGASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-06-19
Authors: Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
PDB entry 3wdm: Crystal structure of 4-phosphopantoate-beta-alanine ligase from Thermococcus kodakarensis
Classification: LIGASE
Source organism: Thermococcus kodakarensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-06-19
Authors: Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
PDB entry 3wdn: High-resolution X-ray crystal structure of bovine H-protein using a high-pressure cryocooling method
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 0.86 Å
Deposited: 2013-06-19
Authors: Higashiura, A., Nakagawa, A.
PDB entry 3wdo: Structure of E. coli YajR transporter
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2013-06-19
Authors: Jiang, D.
PDB entry 3wdp: Structural analysis of a beta-glucosidase mutant derived from a hyperthermophilic tetrameric structure
Classification: HYDROLASE
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-06-19
Authors: Nakabayashi, M., Kataoka, M., Ishikawa, K.
PDB entry 3wdq: Crystal structure of beta-mannanase from a symbiotic protist of the termite Reticulitermes speratus
Classification: HYDROLASE
Source organism: Symbiotic protist of Reticulitermes speratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2013-06-20
Authors: Tsukagoshi, H., Ishida, T., Touhara, K.K., Igarashi, K., Samejima, M., Fushinobu, S., Kitamoto, K., Arioka, M.
PDB entry 3wdr: Crystal structure of beta-mannanase from a symbiotic protist of the termite Reticulitermes speratus complexed with gluco-manno-oligosaccharide
Classification: HYDROLASE
Source organism: Symbiotic protist of Reticulitermes speratus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2013-06-20
Authors: Tsukagoshi, H., Ishida, T., Touhara, K.K., Igarashi, K., Samejima, M., Fushinobu, S., Kitamoto, K., Arioka, M.
PDB entry 3wds: Crystal structure of 3-quinuclidinone reductase from Agrobacterium tumefaciens
Classification: OXIDOREDUCTASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2013-06-22
Authors: Hou, F., Miyakawa, T., Tanokura, M.
PDB entry 3wdt: The apo-form structure of PtLic16A from Paecilomyces thermophila
Classification: HYDROLASE
Source organism: Paecilomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2013-06-25
Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wdu: The complex structure of PtLic16A with cellobiose
Classification: HYDROLASE
Source organism: Paecilomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2013-06-25
Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wdv: The complex structure of PtLic16A with cellotetraose
Classification: HYDROLASE
Source organism: Paecilomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.936 Å
Deposited: 2013-06-25
Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wdw: The apo-form structure of E113A from Paecilomyces thermophila
Classification: HYDROLASE
Source organism: Paecilomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-06-25
Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wdx: The complex structure of E113A with glucotriose
Classification: HYDROLASE
Source organism: Paecilomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-06-25
Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wdy: The complex structure of E113A with cellotetraose
Classification: HYDROLASE
Source organism: Paecilomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2013-06-25
Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.
PDB entry 3wdz: Crystal Structure of Keap1 in Complex with phosphorylated p62
Classification: TRANSCRIPTION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-06-26
Authors: Fukutomi, T., Takagi, K., Mizushima, T., Tanaka, K., Komatsu, M., Yamamoto, M.
PDB entry 3we0: L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-06-26
Authors: Im, D.H., Matsui, D., Fukuta, Y., Fushinobu, S., Isobe, K., Asano, Y.
PDB entry 3we1: Crystal structure of Dengue 4 Envelope protein domain III (ED3)
Classification: Structural protein, Immune system
Source organism: Dengue virus type 4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.278 Å
Deposited: 2013-06-27
Authors: Elahi, M., Islam, M.M., Noguchi, K., Yohda, M., Toh, H., Kuroda, Y.
PDB entry 3we2: Structure of BLM RQC domain bound to a phosphate ion
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2013-06-28
Authors: Kim, S.Y., Hakoshima, T., Kitano, K.
PDB entry 3we3: Structure of BLM RQC domain bound to an arsenate ion
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2013-06-28
Authors: Kim, S.Y., Hakoshima, T., Kitano, K.
PDB entry 3we4: Crystal structure of S6K1 kinase domain in complex with a pyrimidine derivative PF-4708671 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.995 Å
Deposited: 2013-06-29
Authors: Niwa, H., Shirouzu, M., Yokoyama, S.
PDB entry 3we5: Crystal structure of ubiquitin conjugating enzyme E2 UbcA1 from Agrocybe aegerita
Classification: LIGASE
Source organism: Agrocybe aegerita
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-07-01
Authors: Li, D.F., Feng, L., Wang, D.C., Liu, W.
PDB entry 3we6: Crystal structure of anti-Prostaglandin E2 Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2013-07-01
Authors: Sugahara, M., Ago, H., Saino, H., Miyano, M.
PDB entry 3we7: Crystal Structure of Diacetylchitobiose Deacetylase from Pyrococcus horikoshii
Classification: HYDROLASE
Source organism: Pyrococcus horikoshii OT3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2013-07-01
Authors: Mine, S., Nakamura, T., Fukuda, Y., Inoue, T., Uegaki, K., Sato, T.
PDB entry 3we8: Pim-1 kinase in complex with Ruthenium-based inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.954 Å
Deposited: 2013-07-02
Authors: Waehler, K., Kraeling, K., Steuber, H., Meggers, E.
PDB entry 3we9: The crystal structure of YisP from Bacillus subtilis subsp. subtilis strain 168
Classification: TRANSFERASE
Source organism: Bacillus subtilis subsp. subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2013-07-02
Authors: Hu, Y., Huang, C.H., Chan, H.C., Ko, T.P., Feng, X., Oldfield, E., Guo, R.T.
PDB entry 3wea: Crystal structure of a Niemann-Pick type C2 protein from Japanese carpenter ant
Classification: LIPID BINDING PROTEIN
Source organism: Camponotus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-07-02
Authors: Fujimoto, Z., Tsuchiya, W., Ishida, Y., Yamazaki, T.
PDB entry 3web: Crystal structure of a Niemann-Pick type C2 protein from Japanese carpenter ant in complex with oleic acid
Classification: LIPID BINDING PROTEIN
Source organism: Camponotus japonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2013-07-02
Authors: Fujimoto, Z., Tsuchiya, W., Ishida, Y., Yamazaki, T.
PDB entry 3wec: Structure of P450 RauA (CYP1050A1) complexed with a biosynthetic intermediate of aurachin RE
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2013-07-03
Authors: Yasutake, Y., Kitagawa, W., Tamura, T.
PDB entry 3wee: Structure of the full-length yeast Arp7-Arp9 Heterodimer
Classification: TRANSCRIPTION REGULATOR
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2013-07-06
Authors: Lobsiger, J., Richmond, T.J.
PDB entry 3wef: Crystal structure of the human squalene synthase in complex with farnesyl thiopyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2013-07-07
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J.
PDB entry 3weg: Crystal structure of the human squalene synthase in complex with farnesyl thiopyrophosphate and magnesium ion
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2013-07-07
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J.
PDB entry 3weh: Crystal structure of the human squalene synthase in complex with presqualene pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2013-07-07
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J.
PDB entry 3wei: Crystal structure of the human squalene synthase Y73A mutant in complex with presqualene pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2013-07-07
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J.
PDB entry 3wej: Crystal structure of the human squalene synthase F288A mutant in complex with presqualene pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-07-07
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J.
PDB entry 3wek: Crystal structure of the human squalene synthase F288L mutant in complex with presqualene pyrophosphate
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2013-07-07
Authors: Liu, C.I., Jeng, W.Y., Wang, A.H.J.
PDB entry 3wel: Sugar beet alpha-glucosidase with acarviosyl-maltotriose
Classification: HYDROLASE
Source organism: Beta vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2013-07-08
Authors: Tagami, T., Yamashita, K., Okuyama, M., Mori, H., Yao, M., Kimura, A.
PDB entry 3wem: Sugar beet alpha-glucosidase with acarviosyl-maltotetraose
Classification: HYDROLASE
Source organism: Beta vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.591 Å
Deposited: 2013-07-09
Authors: Tagami, T., Yamashita, K., Okuyama, M., Mori, H., Yao, M., Kimura, A.
PDB entry 3wen: Sugar beet alpha-glucosidase with acarviosyl-maltopentaose
Classification: HYDROLASE
Source organism: Beta vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2013-07-09
Authors: Tagami, T., Yamashita, K., Okuyama, M., Mori, H., Yao, M., Kimura, A.
PDB entry 3weo: Sugar beet alpha-glucosidase with acarviosyl-maltohexaose
Classification: HYDROLASE
Source organism: Beta vulgaris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2013-07-09
Authors: Tagami, T., Yamashita, K., Okuyama, M., Mori, H., Yao, M., Kimura, A.
PDB entry 3weu: Crystal structure of the L-Lys epsilon-oxidase from Marinomonas mediterranea
Classification: OXIDOREDUCTASE
Source organism: Marinomonas mediterranea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2013-07-12
Authors: Okazaki, S., Nakano, S., Matsui, D., Akaji, S., Inagaki, K., Asano, Y.
PDB entry 3wev: Crystal structure of the Schiff base intermediate of L-Lys epsilon-oxidase from Marinomonas mediterranea with L-Lys
Classification: OXIDOREDUCTASE
Source organism: Marinomonas mediterranea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2013-07-12
Authors: Okazaki, S., Nakano, S., Matsui, D., Akaji, S., Inagaki, K., Asano, Y.
PDB entry 3wew: Crystal structure of HtdX (Rv0241c) of Mycobacterium tuberculosis at 2.4 A resolution
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-07-16
Authors: Biswas, R., Dutta, D., Das, A.K.
PDB entry 3wex: Crystal structure of HLA-DP5 in complex with Cry j 1-derived peptide (residues 214-222)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-07-16
Authors: Kusano, S., Kukimoto-Niino, M., Shirouzu, M., Yokoyama, S.
PDB entry 3wez: Crystal structure of human beta-galactosidase in complex with NOEV
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2013-07-16
Authors: Suzuki, H., Ohto, U., Shimizu, T.
PDB entry 3wf0: Crystal structure of human beta-galactosidase in complex with 6S-NBI-DGJ
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-07-16
Authors: Suzuki, H., Ohto, U., Shimizu, T.
PDB entry 3wf1: Crystal structure of human beta-galactosidase in complex with 6S-NBI-GJ
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-07-16
Authors: Suzuki, H., Ohto, U., Shimizu, T.
PDB entry 3wf2: Crystal structure of human beta-galactosidase in complex with NBT-DGJ
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-07-16
Authors: Suzuki, H., Ohto, U., Shimizu, T.
PDB entry 3wf3: Crystal structure of human beta-galactosidase mutant I51T in complex with Galactose
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2013-07-16
Authors: Suzuki, H., Ohto, U., Shimizu, T.
PDB entry 3wf4: Crystal structure of human beta-galactosidase mutant I51T in complex with 6S-NBI-DGJ
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-07-16
Authors: Suzuki, H., Ohto, U., Shimizu, T.
PDB entry 3wf5: Crystal structure of S6K1 kinase domain in complex with a pyrazolopyrimidine derivative 4-[4-(1H-benzimidazol-2-yl)piperidin-1-yl]-1H-pyrazolo[3,4-d]pyrimidine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2013-07-17
Authors: Niwa, H., Shirouzu, M., Yokoyama, S.
PDB entry 3wf6: Crystal structure of S6K1 kinase domain in complex with a pyrazolopyrimidine derivative 4-[4-(1H-indol-3-yl)-3,6-dihydropyridin-1(2H)-yl]-1H-pyrazolo[3,4-d]pyrimidine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.031 Å
Deposited: 2013-07-17
Authors: Niwa, H., Shirouzu, M., Yokoyama, S.
PDB entry 3wf7: Crystal structure of S6K1 kinase domain in complex with a purine derivative 1-(9H-purin-6-yl)-N-[3-(trifluoromethyl)phenyl]piperidine-4-carboxamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2013-07-17
Authors: Niwa, H., Shirouzu, M., Yokoyama, S.
PDB entry 3wf8: Crystal structure of S6K1 kinase domain in complex with a quinoline derivative 2-oxo-2-[(4-sulfamoylphenyl)amino]ethyl 7,8,9,10-tetrahydro-6H-cyclohepta[b]quinoline-11-carboxylate
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.975 Å
Deposited: 2013-07-17
Authors: Niwa, H., Shirouzu, M., Yokoyama, S.
PDB entry 3wf9: Crystal structure of S6K1 kinase domain in complex with a quinoline derivative 1-oxo-1-[(4-sulfamoylphenyl)amino]propan-2-yl-2-methyl-1,2,3,4-tetrahydroacridine-9-carboxylate
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.035 Å
Deposited: 2013-07-17
Authors: Niwa, H., Shirouzu, M., Yokoyama, S.
PDB entry 3wfa: Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase
Classification: HYDROLASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2013-07-18
Authors: Okuyama, M., Yoshida, T., Hondoh, H., Mori, H., Yao, M., Kimura, A.
PDB entry 3wfb: Reduced cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment
Classification: IMMUNE SYSTEM/OXIDOREDUCTASE
Source organism: Mus musculus; Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2013-07-18
Authors: Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T.
PDB entry 3wfc: Reduced and carbonmonoxide-bound cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment
Classification: IMMUNE SYSTEM/OXIDOREDUCTASE
Source organism: Mus musculus; Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2013-07-18
Authors: Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T.
PDB entry 3wfd: Reduced and acetaldoxime-bound cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment
Classification: IMMUNE SYSTEM/OXIDOREDUCTASE
Source organism: Mus musculus; Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2013-07-18
Authors: Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T.
PDB entry 3wfe: Reduced and cyanide-bound cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment
Classification: IMMUNE SYSTEM/OXIDOREDUCTASE
Source organism: Mus musculus; Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2013-07-18
Authors: Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T.
PDB entry 3wff: Mineralocorticoid receptor ligand-binding domain with compound 2b
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2013-07-19
Authors: Sogabe, S., Habuka, N.
PDB entry 3wfg: Mineralocorticoid receptor ligand-binding domain with compuond 2e
Classification: TRANSCRIPTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2013-07-19
Authors: Sogabe, S., Habuka, N.
PDB entry 3wfh: Crystal structure of anti-Prostaglandin E2 Fab fragment PGE2 complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-07-19
Authors: Sugahara, M., Ago, H., Saino, H., Miyano, M.
PDB entry 3wfi: The crystal structure of D-mandelate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2013-07-19
Authors: Miyanaga, A., Fujisawa, S., Furukawa, N., Arai, K., Nakajima, M., Taguchi, H.
PDB entry 3wfj: The complex structure of D-mandelate dehydrogenase with NADH
Classification: OXIDOREDUCTASE
Source organism: Enterococcus faecium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2013-07-19
Authors: Miyanaga, A., Fujisawa, S., Furukawa, N., Arai, K., Nakajima, M., Taguchi, H.
PDB entry 3wfl: Crtstal structure of glycoside hydrolase family 5 beta-mannanase from Talaromyces trachyspermus
Classification: HYDROLASE
Source organism: Talaromyces trachyspermus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2013-07-19
Authors: Suzuki, K., Ichinose, H., Kamino, K., Ogasawara, W., Kaneko, S., Fushinobu, S.
PDB entry 3wfn: Crystal Structure of Nav1.6 IQ motif in complex with apo-CaM
Classification: METAL BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2013-07-23
Authors: Chichili, V.P.R., Sivaraman, J.
PDB entry 3wfo: tRNA processing enzyme (apo form 1)
Classification: TRANSFERASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2013-07-23
Authors: Yamashita, S., Takeshita, D., Tomita, K.
PDB entry 3wfp: tRNA processing enzyme (apo form 2)
Classification: TRANSFERASE
Source organism: Aquifex aeolicus (strain VF5); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 4.005 Å
Deposited: 2013-07-23
Authors: Yamashita, S., Takeshita, D., Tomita, K.
PDB entry 3wfq: tRNA processing enzyme complex 1
Classification: Transferase/RNA
Source organism: Aquifex aeolicus (strain VF5); synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.619 Å
Deposited: 2013-07-23
Authors: Yamashita, S., Takeshita, D., Tomita, K.
PDB entry 3wfr: tRNA processing enzyme complex 2
Classification: Transferase/RNA
Source organism: Aquifex aeolicus (strain VF5); synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.501 Å
Deposited: 2013-07-23
Authors: Yamashita, S., Takeshita, D., Tomita, K.
PDB entry 3wfs: tRNA processing enzyme complex 3
Classification: Transferase/RNA
Source organism: Aquifex aeolicus (strain VF5); synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.311 Å
Deposited: 2013-07-23
Authors: Yamashita, S., Takeshita, D., Tomita, K.
PDB entry 3wft: Crystal structure of horse heart myoglobin reconstituted with cobalt(II) tetradehydrocorrin
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2013-07-23
Authors: Mizohata, E., Morita, Y., Oohora, K., Hirata, K., Ohbayashi, J., Inoue, T., Hisaeda, Y., Hayashi, T.
PDB entry 3wfu: Crystal structure of horse heart myoglobin reconstituted with cobalt(I) tetradehydrocorrin
Classification: OXYGEN TRANSPORT
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2013-07-23
Authors: Mizohata, E., Morita, Y., Oohora, K., Hirata, K., Ohbayashi, J., Inoue, T., Hisaeda, Y., Hayashi, T.
PDB entry 3wfv: HIV-1 CRF07 gp41
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2013-07-24
Authors: Du, J., Xue, H., Ma, J., Liu, F., Zhou, J., Shao, Y., Qiao, W., Liu, X.
PDB entry 3wfw: Crystal Structure of the Closed Form of the HGbRL's Globin Domain
Classification: OXYGEN TRANSPORT
Source organism: Methylacidiphilum infernorum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2013-07-24
Authors: Teh, A.H.
PDB entry 3wfx: Crystal Structure of the Imidazole-Bound Form of the HGbRL's Globin Domain
Classification: OXYGEN TRANSPORT
Source organism: Methylacidiphilum infernorum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2013-07-24
Authors: Teh, A.H.
PDB entry 3wfz: Crystal structure of Galacto-N-Biose/Lacto-N-Biose I Phosphorylase C236Y Mutant
Classification: TRANSFERASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2013-07-25
Authors: Koyama, Y., Hidaka, M., Kawakami, M., Nishimoto, M., Kitaoka, M.
PDB entry 3wg1: Crystal structure of Agrocybe cylindracea galectin with lactose
Classification: SUGAR BINDING PROTEIN
Source organism: Agrocybe aegerita
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2013-07-25
Authors: Kuwabara, N., Hu, D., Tateno, H., Makio, H., Hirabayashi, J., Kato, R.
PDB entry 3wg2: Crystal structure of Agrocybe cylindracea galectin mutant (N46A)
Classification: SUGAR BINDING PROTEIN
Source organism: Agrocybe aegerita
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-07-25
Authors: Kuwabara, N., Hu, D., Tateno, H., Makio, H., Hirabayashi, J., Kato, R.
PDB entry 3wg3: Crystal structure of Agrocybe cylindracea galectin with blood type A antigen tetraose
Classification: SUGAR BINDING PROTEIN
Source organism: Agrocybe cylindracea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2013-07-25
Authors: Kuwabara, N., Hu, D., Tateno, H., Makio, H., Hirabayashi, J., Kato, R.
PDB entry 3wg4: Crystal structure of Agrocybe cylindracea galectin mutant (N46A) with blood type A antigen tetraose
Classification: SUGAR BINDING PROTEIN
Source organism: Agrocybe cylindracea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2013-07-25
Authors: Kuwabara, N., Hu, D., Tateno, H., Makio, H., Hirabayashi, J., Kato, R.
PDB entry 3wg5: 1510-N membrane-bound stomatin-specific protease K138A mutant in complex with a substrate peptide under heat treatment
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Pyrococcus horikoshii; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2013-07-26
Authors: Yokoyama, H., Fujii, S., Matsui, I.
PDB entry 3wg6: Crystal structure of conjugated polyketone reductase C1 from Candida parapsilosis complexed with NADPH
Classification: OXIDOREDUCTASE
Source organism: Candida parapsilosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2013-07-28
Authors: Qin, H.-M., Yamamura, A., Miyakawa, T., Maruoka, S., Ohtsuka, J., Nagata, K., Kataoka, M., Shimizu, S., Tanokura, M.