LiteFold/PDB huggingface dataset:
PDB entry 7x97: Crystal structure of actinomycin D-echinomycin-d(AGCCCGT/ACGGGCT) complex
Classification: DNA/ANTIBIOTIC
Source organism: Streptomyces; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2022-03-15
Authors: Kao, S.H., Satange, R.B., Hou, M.H.
PDB entry 7x98: 5-Aminolevulinate synthase HemA from Rhodopseudomonas palustris
Classification: TRANSFERASE
Source organism: Rhodopseudomonas palustris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-03-15
Authors: Zhang, T.T., Liu, H.P.
PDB entry 7x99: Anabolic ornithine carbamoyltransferases (OTCs) from Psychrobacter sp. PAMC 21119
Classification: TRANSFERASE
Source organism: Psychrobacter sp. PAMC 21119
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-03-15
Authors: Do, H., Lee, J.H.
PDB entry 7x9a: Cryo-EM structure of neuropeptide Y Y1 receptor in complex with NPY and Gi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-03-15
Authors: Tang, T., Han, S., Zhao, Q., Wu, B.
PDB entry 7x9b: Cryo-EM structure of neuropeptide Y Y2 receptor in complex with NPY and Gi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-03-15
Authors: Tang, T., Han, S., Zhao, Q., Wu, B.
PDB entry 7x9c: Cryo-EM structure of neuropeptide Y Y4 receptor in complex with PP and Gi
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-03-15
Authors: Tang, T., Han, S., Zhao, Q., Wu, B.
PDB entry 7x9d: DNMT3B in complex with harmine
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.08 Å
Deposited: 2022-03-15
Authors: Cho, C.-C., Yuan, H.S.
PDB entry 7x9e: Crystal structure of the 76E1 Fab in complex with a SARS-CoV-2 spike peptide
Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-03-15
Authors: Chen, X., Zhang, T., Ding, J., Sun, X., Sun, B.
PDB entry 7x9f: Crystal structure of actinomycin D-echinomycin-d(AGCGCGT/ACGCGCT) complex
Classification: DNA/ANTIBIOTIC
Source organism: Streptomyces; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2022-03-15
Authors: Kao, S.H., Satange, R.B., Hou, M.H.
PDB entry 7x9g: Crystal structure of human EDA and EDAR
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-03-15
Authors: Yu, K., Wan, F., Huang, C., Wu, J., Lei, M.
PDB entry 7x9h: Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 9 hr using 5 mM Mn2+
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2022-03-15
Authors: Nakamura, T., Yamagata, Y.
PDB entry 7x9i: Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 12 hr using 5 mM Mn2+
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-03-15
Authors: Nakamura, T., Yamagata, Y.
PDB entry 7x9j: Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 24 hr using 5 mM Mn2+
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-03-15
Authors: Nakamura, T., Yamagata, Y.
PDB entry 7x9k: Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 2 hr using 10 mM Mn2+
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2022-03-15
Authors: Nakamura, T., Yamagata, Y.
PDB entry 7x9l: Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 4 hr using 10 mM Mn2+
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-03-15
Authors: Nakamura, T., Yamagata, Y.
PDB entry 7x9n: Crystal structure of MutT-8-oxo-dGTP complex with three Mg2+ ions: Reaction using Mg2+
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-03-15
Authors: Nakamura, T., Yamagata, Y.
PDB entry 7x9o: Crystal structure of MutT-8-oxo-dGMP complex with Mg2+ ions: Reaction using Mg2+
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-03-15
Authors: Nakamura, T., Yamagata, Y.
PDB entry 7x9p: Crystal structure of human STING complexed with compound BSP17
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-03-15
Authors: Pan, L., Guan, X., Feng, X., Li, Z., Bian, J.
PDB entry 7x9q: Crystal structure of human STING complexed with compound BSP16
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-03-15
Authors: Pan, L., Guan, X., Feng, X., Li, Z., Bian, J.
PDB entry 7x9r: Crystal structure of the antirepressor GmaR
Classification: PROTEIN BINDING
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-03-16
Authors: Cho, S.Y., Na, H.W., Oh, H.B., Kwak, Y.M., Song, W.S., Park, S.C., Yoon, S.I.
PDB entry 7x9s: Crystal structure of a complex between the antirepressor GmaR and the transcriptional repressor MogR
Classification: PROTEIN BINDING/TRANSCRIPTION
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2022-03-16
Authors: Cho, S.Y., Na, H.W., Oh, H.B., Kwak, Y.M., Song, W.S., Park, S.C., Yoon, S.I.
PDB entry 7x9u: Type-II KH motif of human mitochondrial RbfA
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2022-03-16
Authors: Kuwasako, K., Suzuki, S., Furue, M., Takizawa, M., Takahashi, M., Tsuda, K., Nagata, T., Watanabe, S., Tanaka, A., Kobayashi, N., Kigawa, T., Guntert, P., Shirouzu, M., Yokoyama, S., Muto, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
PDB entry 7x9w: Sulfur Oxygenase Reductase from Acidianus ambivalens
Classification: OXIDOREDUCTASE
Source organism: Acidianus ambivalens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2022-03-16
Authors: Sobhy, M.A., Hamdan, S.M.
PDB entry 7x9x: Thermotoga Maritima ferritin variant-Tm-E(G40E) with Zn
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-03-16
Authors: Liu, Y., Zhao, G.
PDB entry 7x9y: Cryo-EM structure of the apo CCR3-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-03-16
Authors: Shao, Z., Tan, Y., Shen, Q., Yao, B., Hou, L., Qin, J., Xu, P., Mao, C., Chen, L., Zhang, H., Shen, D., Zhang, C., Li, W., Du, X., Li, F., Chen, Z., Jiang, Y., Xu, H.E., Ying, S., Ma, H., Zhang, Y., Shen, H.
PDB entry 7x9z: Thermotoga maritima ferritin variant-Tm-E(G40E) with Co
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-03-16
Authors: Yu, L., Guanghua, Z.
PDB entry 7xa0: Thermotoga maritima ferritin variant-Tm-E(S111F)
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2022-03-16
Authors: Yu, L., Guanghua, Z.
PDB entry 7xa1: Thermotoga maritima ferritin variant-Tm-E(S111Y)
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-03-16
Authors: Yu, L., Guanghua, Z.
PDB entry 7xa2: Thermotoga maritima ferritin variant-Tm-E(S111H)
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-03-16
Authors: Liu, Y., Zhao, G.
PDB entry 7xa3: Cryo-EM structure of the CCL2 bound CCR2-Gi complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-03-17
Authors: Shao, Z., Tan, Y., Shen, Q., Yao, B., Hou, L., Qin, J., Xu, P., Mao, C., Chen, L., Zhang, H., Shen, D., Zhang, C., Li, W., Du, X., Li, F., Chen, Z., Jiang, Y., Xu, H.E., Ying, S., Ma, H., Zhang, Y., Shen, H.
PDB entry 7xa4: Thermotoga maritima ferritin variant-Tm-E (S111H) with Zn
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2022-03-17
Authors: Liu, Y., Zhao, G.
PDB entry 7xa7: Crystal structure of SARS-CoV-2 receptor-binding domain in complex with intermediate horseshoe bat ACE2
Classification: VIRAL PROTEIN
Source organism: Rhinolophus affinis; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2022-03-17
Authors: Tang, L.F., Zhang, D., Han, P., Qi, J.X.
PDB entry 7xa9: Structure of Arabidopsis thaliana CLCa
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-03-17
Authors: Ji, S., Jin, H., Kaiming, Z., Mingxing, W., Shanshan, L., Long, C.
PDB entry 7xaa: Crystal structure of PDE4D catalytic domain complexed with compound 21d
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.10041 Å
Deposited: 2022-03-17
Authors: Huang, Y.-Y., He, X., Luo, H.-B.
PDB entry 7xab: Crystal structure of PDE4D catalytic domain complexed with compound 22d
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.00067 Å
Deposited: 2022-03-17
Authors: Huang, Y.-Y., He, X., Luo, H.-B.
PDB entry 7xac: Dimeric structure of human galectin-7 in complex with two glycerol
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-03-17
Authors: Si, Y.L.
PDB entry 7xad: Crystal strucutre of PD-L1 and DBL2_02 designed protein binder
Classification: IMMUNE SYSTEM
Source organism: chemical production metagenome; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-03-17
Authors: Liu, K.F., Xu, Z.P., Han, P., Pacesa, M., Gao, G.F., Chai, Y., Tan, S.G.
PDB entry 7xae: Crystal strucutre of PD-L1 and 3ONJA protein
Classification: IMMUNE SYSTEM
Source organism: chemical production metagenome; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.44 Å
Deposited: 2022-03-17
Authors: Liu, K.F., Xu, Z.P., Han, P., Gao, G.F., Chai, Y., Tan, S.G.
PDB entry 7xaf: The crystal structure of TrkA kinase in complex with 4^6,14-dimethyl-N-(3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl)-10-oxo-5-oxa-11,14-diaza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclo- tetradecaphan-2-yne-45-carboxamide
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.00118 Å
Deposited: 2022-03-17
Authors: Zhang, Z.M., Wang, Y.J.
PDB entry 7xam: Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-03-18
Authors: Sengupta, J., Baid, P.
PDB entry 7xan: Structure of a triple-helix region of human collagen type III from Trautec
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-03-18
Authors: Qian, S., Li, H., Fan, X., Tian, X., Li, J., Wang, L., Chu, Y.
PDB entry 7xao: Crystal structure of thioredoxin 1
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-03-18
Authors: Chang, Y.J., Park, H.H.
PDB entry 7xaq: Cryo-EM structure of PvrA-DNA complex
Classification: TRANSCRIPTION
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2022-03-18
Authors: Zhu, Y.B., Su, Z.M., Bao, R.
PDB entry 7xar: Crystal structure of 3C-like protease from SARS-CoV-2 in complex with covalent inhibitor
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-03-18
Authors: Caaveiro, J.M.M., Ochi, J., Takahashi, D., Ueda, T., Ojida, A.
PDB entry 7xat: Structure of somatostatin receptor 2 bound with SST14.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2022-03-19
Authors: Bo, Q., Yang, F., Li, Y.G., Meng, X.Y., Zhang, H.H., Zhou, Y.X., Ling, S.L., Sun, D.M., Lv, P., Liu, L., Shi, P., Tian, C.L.
PDB entry 7xau: Structure of somatostatin receptor 2 bound with octreotide.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2022-03-19
Authors: Bo, Q., Yang, F., Li, Y.G., Meng, X.Y., Zhang, H.H., Zhou, Y.X., Ling, S.L., Sun, D.M., Lv, P., Liu, L., Shi, P., Tian, C.L.
PDB entry 7xav: Structure of somatostatin receptor 2 bound with lanreotide.
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2022-03-19
Authors: Bo, Q., Yang, F., Li, Y.G., Meng, X.Y., Zhang, H.H., Zhou, Y.X., Ling, S.L., Sun, D.M., Lv, P., Liu, L., Shi, P., Tian, C.L.
PDB entry 7xax: Crystal structure of SARS coronavirus main protease in complex with Baicalei
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-03-19
Authors: Zhou, X.L., Li, J., Zhang, J.
PDB entry 7xay: Crystal structure of Hat1-Hat2-Asf1-H3-H4
Classification: TRANSFERASE
Source organism: Aspergillus fumigatus Af293; Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2022-03-19
Authors: Yue, Y., Yang, W.S., Xu, R.M.
PDB entry 7xaz: Crystal structure of Omicron BA.1.1 RBD complexed with hACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2022-03-19
Authors: Liao, H., Meng, Y., Li, W.
PDB entry 7xb0: Crystal structure of Omicron BA.2 RBD complexed with hACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-03-19
Authors: Li, L., Liao, H., Meng, Y., Li, W.
PDB entry 7xb1: Crystal structure of Omicron BA.3 RBD complexed with hACE2
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-03-19
Authors: Li, W., Meng, Y., Liao, H.
PDB entry 7xb2: CVB5-intermediate altered particle containing VP1/VP2/VP3 and RNA genome
Classification: VIRUS
Source organism: Coxsackievirus B5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2022-03-20
Authors: Yang, P., Wang, K.
PDB entry 7xb3: Crystal structure of SARS-Cov-2 main protease D48N mutant
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2022-03-20
Authors: Hu, X.H., Li, J., Zhang, J.
PDB entry 7xb4: Crystal structure of SARS-Cov-2 main protease D48N mutant in complex with PF07321332
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2022-03-20
Authors: Hu, X.H., Li, J., Zhang, J.
PDB entry 7xb5: Structure of the ligand-binding domain of S. cerevisiae Upc2 in fusion with T4 lysozyme
Classification: TRANSCRIPTION
Source organism: Escherichia virus T4; Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 3.44 Å
Deposited: 2022-03-20
Authors: Tan, L., Im, Y.J.
PDB entry 7xb6: Crystal structure of the O-carbamoyltransferase VtdB in complex with carbamoyl adenylate intermediate
Classification: TRANSFERASE
Source organism: Streptomyces
Experimental method: X-RAY DIFFRACTION
Resolution: 2.901 Å
Deposited: 2022-03-20
Authors: Zhang, H., Teng, Y.
PDB entry 7xb7: Phosphoglycerate mutase 1 complexed with a covalent inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-03-21
Authors: Jiang, L.L., Zhou, L.
PDB entry 7xb8: Phosphoglycerate mutase 1 complexed with a covalent inhibitor
Classification: ISOMERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-03-21
Authors: Jiang, L.L., Zhou, L.
PDB entry 7xb9: Phosphoglycerate mutase 1 complexed with a covalent inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2022-03-21
Authors: Jiang, L.L., Zhou, L.
PDB entry 7xba: Glutathione S-transferase bound with a covalent inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2022-03-21
Authors: Jiang, L.L., Zhou, L.
PDB entry 7xbb: Crystal structure of PDE4D catalytic domain complexed with compound 23a
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.10001 Å
Deposited: 2022-03-21
Authors: Huang, Y.-Y., Luo, H.-B.
PDB entry 7xbc: The 0.92 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with lignoceric acid
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.92 Å
Deposited: 2022-03-21
Authors: Sugiyama, S., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.
PDB entry 7xbd: Cryo-EM structure of human galanin receptor 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2022-03-21
Authors: Ishimoto, N., Kita, S., Park, S.Y.
PDB entry 7xbe: co-crystal structure of CcpE-RD with citrate
Classification: TRANSCRIPTION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-03-21
Authors: Lan, L.F., Chen, F.F., Gan, J.H.
PDB entry 7xbf: The complex structure of RshSTT182/200 RBD-insert2 bound to human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Rhinolophus shameli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.51 Å
Deposited: 2022-03-21
Authors: Hu, Y., Liu, K.F., Han, P., Qi, J.X.
PDB entry 7xbg: The crystal structure of RshSTT182/200 RBD-insert2-T346R-Y496G mutant in complex with human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Rhinolophus shameli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.37 Å
Deposited: 2022-03-21
Authors: Hu, Y., Liu, K.F., Han, P., Qi, J.X.
PDB entry 7xbh: The complex structure of RshSTT182/200 RBD bound to human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Rhinolophus shameli
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2022-03-21
Authors: Hu, Y., Liu, K.F., Han, P., Qi, J.X.
PDB entry 7xbi: The crystal structure of human TrkA kinase bound to the inhibitor
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2022-03-21
Authors: Wu, C.Y., Wang, G., Ouyang, L.
PDB entry 7xbj: Txp40, an insecticidal toxin protein from Xenorhabdus nematophila
Classification: TOXIN
Source organism: Xenorhabdus nematophila ATCC 19061
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2022-03-21
Authors: Kinkar, O., Kumar, A., Prashar, A., Hire, R.S., Makde, R.D.
PDB entry 7xbk: Structure and mechanism of a mitochondrial AAA+ disaggregase CLPB
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-03-21
Authors: Wu, D., Liu, Y., Dai, Y., Wang, G., Lu, G., Chen, Y., Li, N., Lin, J., Gao, N.
PDB entry 7xbl: Dimeric structure of human galectin-7 in complex with three glycerol
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-03-21
Authors: Si, Y.L.
PDB entry 7xbm: Crystal Structure of cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238
Classification: OXIDOREDUCTASE
Source organism: Streptomyces venezuelae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-03-21
Authors: Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.
PDB entry 7xbn: Crystal Structure of YC-17-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238
Classification: OXIDOREDUCTASE
Source organism: Streptomyces venezuelae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-03-21
Authors: Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.
PDB entry 7xbo: Crystal Structure of 10-dml-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238
Classification: OXIDOREDUCTASE
Source organism: Streptomyces venezuelae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-03-21
Authors: Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.
PDB entry 7xbq: Crystal structure of potato 14-3-3 protein St14f
Classification: PLANT PROTEIN
Source organism: Solanum tuberosum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2022-03-21
Authors: Harada, K., Kojima, C., Yamashita, E., Nakagawa, A.
PDB entry 7xbr: Crystal structure of phosphorylated AtMKK5
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-03-22
Authors: Pei, C.J., Luo, Z.P., Wu, J.W., Wang, Z.X.
PDB entry 7xbs: Crystal structure of the adenylation domain of CmnG
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2022-03-22
Authors: Chen, I.H., Wang, Y.L., Chang, C.Y.
PDB entry 7xbt: Crystal structure of the adenylation domain of CmnG in complex with AMP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-03-22
Authors: Chen, I.H., Wang, Y.L., Chang, C.Y.
PDB entry 7xbu: Crystal structure of the adenylation domain of CmnG in complex with capreomycidine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-03-22
Authors: Chen, I.H., Wang, Y.L., Chang, C.Y.
PDB entry 7xbv: Crystal structure of the adenylation domain of CmnG in complex with AMPCPP
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharothrix mutabilis subsp. capreolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2022-03-22
Authors: Chen, I.H., Wang, Y.L., Chang, C.Y.
PDB entry 7xbw: Cryo-EM structure of the human chemokine receptor CX3CR1 in complex with Gi1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-03-22
Authors: Lu, M., Zhao, W., Han, S., Zhu, Y., Wu, B., Zhao, Q.
PDB entry 7xbx: Cryo-EM structure of the human chemokine receptor CX3CR1 in complex with CX3CL1 and Gi1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-03-22
Authors: Lu, M., Zhao, W., Han, S., Zhu, Y., Wu, B., Zhao, Q.
PDB entry 7xby: The crystal structure of SARS-CoV-2 Omicron BA.1 variant RBD in complex with equine ACE2
Classification: VIRAL PROTEIN
Source organism: Equus caballus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-03-22
Authors: Xu, Z.P., Liu, K.F., Han, P., Qi, J.X.
PDB entry 7xbz: Crystal structure of Staphylococcus aureus ClpP in complex with R-ZG197
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-03-22
Authors: Wei, B.Y., Gan, J.H., Yang, C.-G.
PDB entry 7xc0: Crystal structure of Human RPTPH
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2022-03-22
Authors: Kim, M., Ryu, S.E.
PDB entry 7xc1: Crystal structure of ERK2 with an allosteric inhibitor 3
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-03-22
Authors: Yoshida, M., Kinoshita, T.
PDB entry 7xc2: Cryo EM structure of oligomeric complex formed by wheat CNL Sr35 and the effector AvrSr35 of the wheat stem rust pathogen
Classification: PLANT PROTEIN/INHIBITOR
Source organism: Puccinia graminis f. sp. tritici; Triticum monococcum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-03-22
Authors: Alexander, F., Li, E.T., Aaron, L., Deng, Y.N., Sun, Y., Chai, J.J.
PDB entry 7xc3: Crystal structure of SARS-CoV-2 NSP3 Macrodomain 3 (SARS-unique domain-M)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-03-22
Authors: Li, J., Gao, J.
PDB entry 7xc4: Crystal structure of SARS-CoV-2 NSP3 Macrodomain 3 (SARS-unique domain-M) in complex with Oxaprozin
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-03-22
Authors: Li, J., Liu, Y., Gao, J., Ruan, K.
PDB entry 7xc5: Crystal structure of the ANK domain of CLPB
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-03-23
Authors: Liu, Y., Wu, D., Lu, G., Gao, N., Lin, J.
PDB entry 7xc6: Photobacterium phosphoreum fatty acid reductase complex LuxC-LuxE
Classification: LUMINESCENT PROTEIN
Source organism: Photobacterium phosphoreum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2022-03-23
Authors: Tian, Q., Huo, Y., Wang, L.
PDB entry 7xc7: Cryo-EM structure of a bacterial protein complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Scalindua brodae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-03-23
Authors: Yu, G., Wang, X., Deng, Z., Zhang, H.
PDB entry 7xc8: Crystal structure of cotton alpha-like expansin GhEXLA1
Classification: PLANT PROTEIN
Source organism: Gossypium hirsutum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2022-03-23
Authors: Zhao, F., Men, S., Xue, Y., Tu, L.L., Yin, P., Zhang, X.L.
PDB entry 7xc9: X-ray crystal structure of sperm whale myoglobin F46C mutant
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-03-23
Authors: Lin, Y.W.
PDB entry 7xca: Crystal structure of the porcine astrovirus capsid spike domain
Classification: VIRAL PROTEIN
Source organism: Porcine astrovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-03-23
Authors: Pan, L.X., Zhang, W.C., Yang, D.F., Yang, L.Y., Liu, H.
PDB entry 7xcb: Crystal structure of the mouse interleukin-9
Classification: CYTOKINE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2022-03-23
Authors: Kim, J.W., Lee, J.-O., Park, S.M.
PDB entry 7xcc: Crystal Structure of the Disease-Specific Protein of Rice Stripe Virus
Classification: VIRAL PROTEIN
Source organism: Rice stripe tenuivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-03-24
Authors: Wu, Y.K., Chen, L.F.
PDB entry 7xcd: Crystal Structure of the Disease-Specific Protein of Rice Stripe Virus
Classification: VIRAL PROTEIN
Source organism: Rice stripe tenuivirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-03-24
Authors: Wu, Y.K., Chen, L.F., Chen, P.
PDB entry 7xce: Crystal structure of Ankyrin G in complex with neurofascin
Classification: PROTEIN BINDING
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-03-24
Authors: He, L., Li, J., Wang, C.
PDB entry 7xcf: X-ray crystal structure of sperm whale myoglobin T67C mutant
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-03-24
Authors: Lin, Y.W.
PDB entry 7xch: Cryo-EM structure of SARS-CoV-2 Omicron spike protein (S-6P-RRAR) in complex with human ACE2 ectodomain (two-RBD-up state)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-03-24
Authors: Gao, G.F., Qi, J.X., Zhao, Z.N., Liu, S., Xie, Y.F.
PDB entry 7xci: Cryo-EM structure of SARS-CoV-2 Omicron RBD in complex with human ACE2 ectodomain (local refinement)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-03-24
Authors: Gao, G.F., Qi, J.X., Zhao, Z.N., Liu, S., Xie, Y.F.
PDB entry 7xck: Cryo-EM structure of SARS-CoV-2 Omicron RBD in complex with S309 fab (local refinement)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-03-24
Authors: Gao, G.F., Qi, J.X., Zhao, Z.N., Xie, Y.F., Liu, S.
PDB entry 7xcl: Crystal structure of trimethylamine methyltransferase MttB from Methanosarcina barkeri at 2.5 A resolution
Classification: TRANSFERASE
Source organism: Methanosarcina barkeri MS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-03-24
Authors: Li, J., Chan, M.K.
PDB entry 7xcm: Crystal structure of sulfite MttB structure at 3.2 A resolution
Classification: TRANSFERASE
Source organism: Methanosarcina barkeri MS
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-03-24
Authors: Li, J., Chan, M.K.
PDB entry 7xcn: Crystal structure of the MttB-MttC complex at 2.7 A resolution
Classification: TRANSFERASE
Source organism: Methanosarcina barkeri MS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-03-24
Authors: Li, J., Chan, M.K.
PDB entry 7xco: Cryo-EM structure of SARS-CoV-2 Omicron spike protein (S-6P-RRAR) in complex with S309 fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-03-24
Authors: Gao, G.F., Qi, J.X., Zhao, Z.N., Liu, S., Xie, Y.F.
PDB entry 7xcp: Cryo-EM structure of Omicron RBD complexed with ACE2 and 304 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2022-03-24
Authors: Zhao, Z., Qi, J., Gao, F.G.
PDB entry 7xcq: X-ray crystal structure of sperm whale myoglobin H64D mutant
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-03-25
Authors: Lin, Y.W.
PDB entry 7xcr: Cryo-EM structure of Dot1L and H2BK34ub-H3K79Nle nucleosome 1:1 complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2022-03-25
Authors: Ai, H.S., Liu, A.J., Lou, Z.Y., Liu, L.
PDB entry 7xct: Cryo-EM structure of Dot1L and H2BK34ub-H3K79Nle nucleosome 2:1 complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2022-03-25
Authors: Ai, H.S., Liu, A.J., Lou, Z.Y., Liu, L.
PDB entry 7xcz: Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with BA7054 and BA7125 fab (local refinement)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-03-26
Authors: Liu, Z., Liu, S.
PDB entry 7xd0: cryo-EM structure of H2BK34ub nucleosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-03-26
Authors: Ai, H.S., Liu, A.J., Lou, Z.Y., Liu, L.
PDB entry 7xd1: cryo-EM structure of unmodified nucleosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-03-26
Authors: Ai, H.S., Liu, A.J., Lou, Z.Y., Liu, L.
PDB entry 7xd2: SARS-CoV-2 S ectodomain trimer in complex with neutralizing antibody 10-5B
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-03-26
Authors: Wang, X., Wang, Z.
PDB entry 7xd3: The relaxed pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Classification: RNA
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Deposited: 2022-03-26
Authors: Luo, B., Zhang, C., Ling, X., Mukherjee, S., Jia, G., Xie, J., Jia, X., Liu, L., Baulin, E.F., Luo, Y., Jiang, L., Dong, H., Wei, X., Bujnicki, J.M., Su, Z.
PDB entry 7xd4: The intermediate pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Classification: RNA
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2022-03-26
Authors: Luo, B., Zhang, C., Ling, X., Mukherjee, S., Jia, G., Xie, J., Jia, X., Liu, L., Baulin, E.F., Luo, Y., Jiang, L., Dong, H., Wei, X., Bujnicki, J.M., Su, Z.
PDB entry 7xd5: The Tet-S2 state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Classification: RNA
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-03-26
Authors: Luo, B., Zhang, C., Ling, X., Mukherjee, S., Jia, G., Xie, J., Jia, X., Liu, L., Baulin, E.F., Luo, Y., Jiang, L., Dong, H., Wei, X., Bujnicki, J.M., Su, Z.
PDB entry 7xd6: The Tet-S2 state with a pseudoknotted 4-way junction of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Classification: RNA
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-03-26
Authors: Luo, B., Zhang, C., Ling, X., Mukherjee, S., Jia, G., Xie, J., Jia, X., Liu, L., Baulin, E.F., Luo, Y., Jiang, L., Dong, H., Wei, X., Bujnicki, J.M., Su, Z.
PDB entry 7xd7: The pre-Tet-C state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Classification: RNA
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2022-03-26
Authors: Luo, B., Zhang, C., Ling, X., Mukherjee, S., Jia, G., Xie, J., Jia, X., Liu, L., Baulin, E.F., Luo, Y., Jiang, L., Dong, H., Wei, X., Bujnicki, J.M., Su, Z.
PDB entry 7xd8: Crystal Structure of Dengue Virus Serotype 2 (DENV2) Polymerase Elongation Complex (Native Form)
Classification: TRANSFERASE/RNA
Source organism: Dengue virus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-03-26
Authors: Wu, J., Wang, X., Gong, P.
PDB entry 7xd9: Crystal Structure of Dengue Virus serotype 2 (DENV2) Polymerase Elongation Complex (CTP Form)
Classification: TRANSFERASE/RNA
Source organism: Dengue virus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2022-03-26
Authors: Wu, J., Wang, X., Gong, P.
PDB entry 7xda: Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with BA7208 and BA7125 fab (local refinement)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2022-03-26
Authors: Liu, Z., Liu, S., Liu, S.
PDB entry 7xdb: Cryo-EM structure of SARS-CoV-2 Omicron Spike protein in complex with BA7208 fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-03-26
Authors: Liu, Z., Liu, S., Gao, Y.Z.
PDB entry 7xdd: Cryo-EM structure of EDS1 and PAD4
Classification: TRANSFERASE/TRANSFERASE ACTIVATOR
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2022-03-26
Authors: Huang, S.J., Jia, A.L., Sun, Y., Han, Z.F., Chai, J.J.
PDB entry 7xde: Cryo-EM structures of human mitochondrial NAD(P)+-dependent malic enzyme in apo form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2022-03-26
Authors: Wang, C.H., Hsieh, J.T., Ho, M.C., Hung, H.C.
PDB entry 7xdf: Cryo-EM structures of human mitochondrial NAD(P)+-dependent malic enzyme in a ternary complex with NAD+ and allosteric inhibitor EA
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2022-03-27
Authors: Wang, C.H., Hsieh, J.T., Ho, M.C., Hung, H.C.
PDB entry 7xdg: Cryo-EM structures of human mitochondrial NAD(P)+-dependent malic enzyme in a ternary complex with NAD+ and allosteric inhibitor MDSA
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-03-27
Authors: Wang, C.H., Hsieh, J.T., Ho, M.C., Hung, H.C.
PDB entry 7xdh: Crystal structure of a dimeric interlocked parallel G-quadruplex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2022-03-27
Authors: Ngo, K.H., Liew, C.W., Lattmann, S., Winnerdy, F.R., Phan, A.T.
PDB entry 7xdi: Tail structure of bacteriophage SSV19
Classification: VIRAL PROTEIN
Source organism: Sulfolobus spindle-shaped virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-03-27
Authors: Liu, H.R., Chen, W.Y.
PDB entry 7xdj: Crystal structure of actinomycin D-echinomycin-d(AGCGCGT/ACGAGCT) complex
Classification: DNA/ANTIBIOTIC
Source organism: Streptomyces; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.435 Å
Deposited: 2022-03-27
Authors: Chien, C.M., Satange, R.B., Hou, M.H.
PDB entry 7xdk: Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7054 and BA7125 fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-03-27
Authors: Liu, Z., Lui, S., Gao, Y.
PDB entry 7xdl: Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7208 and BA7125 fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2022-03-27
Authors: Liu, Z., Liu, S., Yuanzhu, G.
PDB entry 7xdm: ChCODH2 A559W mutant in anaerobic condition
Classification: OXIDOREDUCTASE
Source organism: Carboxydothermus hydrogenoformans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2022-03-28
Authors: Heo, Y.Y., Kim, S.M.
PDB entry 7xdn: Tunnel-redesigned O2-tolerant CO dehydrogenase for removal of CO in real flue gas (ChCODH2 A559H mutant in anaerobic condition)
Classification: OXIDOREDUCTASE
Source organism: Carboxydothermus hydrogenoformans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-03-28
Authors: Heo, Y.Y., Kim, S.M.
PDB entry 7xdp: Tunnel-redesigned O2-tolerant CO dehydrogenase for removal of CO in real flue gas (ChCODH2 A559S mutant in anaerobic condition)
Classification: OXIDOREDUCTASE
Source organism: Carboxydothermus hydrogenoformans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2022-03-28
Authors: Heo, Y.Y., Kim, S.M.
PDB entry 7xdq: Crystal structure of a glucosylglycerol phosphorylase mutant from Marinobacter adhaerens
Classification: BIOSYNTHETIC PROTEIN
Source organism: Marinobacter adhaerens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2022-03-28
Authors: Wei, H.L., Li, Q., Yang, J.G., Liu, W.D., Sun, Y.X.
PDB entry 7xdr: Crystal structure of a glucosylglycerol phosphorylase from Marinobacter adhaerens
Classification: BIOSYNTHETIC PROTEIN
Source organism: Marinobacter adhaerens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-03-28
Authors: Wei, H.L., Li, Q., Yang, J.G., Liu, W.D., Sun, Y.X.
PDB entry 7xds: Crystal structure of wheat stem rust effector AvrSr35
Classification: PROTEIN TRANSPORT
Source organism: Puccinia graminis f. sp. tritici
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-03-28
Authors: Ouyang, S.Y., Zhao, Y.B.
PDB entry 7xdt: Structural basis for Gemin5 decamer-mediated mRNA binding
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2022-03-28
Authors: Guo, Q., Zhao, S., Zhang, K., Xu, C.
PDB entry 7xdu: TtherAmDH-NAD+
Classification: OXIDOREDUCTASE
Source organism: Thermoanaerobacter thermohydrosulfuricus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-03-28
Authors: Chen, C., Qian, Y.Y., Pan, J., Bai, Y.P., Xu, J.H.
PDB entry 7xdv: Crystal structure of a receptor like kinase from Arabidopsis
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-03-29
Authors: Kong, Y.Q., Ming, Z.H.
PDB entry 7xdw: Crystal structure of a receptor like kinase from Arabidopsis
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.926 Å
Deposited: 2022-03-29
Authors: Kong, Y.Q., Ming, Z.H.
PDB entry 7xdx: Crystal structure of a receptor like kinase from Arabidopsis
Classification: RIBOSOMAL PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2022-03-29
Authors: Kong, Y.Q., Ming, Z.H.
PDB entry 7xdy: Crystal structure of a receptor like kinase from Arabidopsis
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2022-03-29
Authors: Kong, Y.Q., Ming, Z.H.
PDB entry 7xe0: Cryo-EM structure of plant NLR Sr35 resistosome
Classification: PLANT PROTEIN
Source organism: Puccinia graminis f. sp. tritici; Triticum monococcum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2022-03-29
Authors: Ouyang, S.Y., Zhao, Y.B., Li, Z.K., Liu, M.X.
PDB entry 7xe1: Crystal structure of LSD2 in complex with cis-4-Br-PCPA
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2022-03-29
Authors: Niwa, H., Sato, S., Umehara, T.
PDB entry 7xe2: Crystal structure of LSD2 in complex with trans-4-Br-PCPA
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-03-29
Authors: Niwa, H., Sato, S., Umehara, T.
PDB entry 7xe3: Crystal structure of LSD2 in complex with cis-4-Br-2,5-F2-PCPA (S1024)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.82 Å
Deposited: 2022-03-29
Authors: Niwa, H., Sato, S., Umehara, T.
PDB entry 7xe4: structure of a membrane-bound glycosyltransferase
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-03-29
Authors: Hu, X.L., Yang, P., Zhang, M., Liu, X.T., Yu, H.J.
PDB entry 7xe5: T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, pH4
Classification: HYDROLASE
Source organism: Escherichia virus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-03-30
Authors: Tamada, T., Hiromoto, T.
PDB entry 7xe6: T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, pH7
Classification: HYDROLASE
Source organism: Escherichia virus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-03-30
Authors: Tamada, T., Hiromoto, T.
PDB entry 7xe7: T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, pH10
Classification: HYDROLASE
Source organism: Escherichia virus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2022-03-30
Authors: Tamada, T., Hiromoto, T.
PDB entry 7xe8: Crystal structure of imine reductase from Streptomyces albidoflavus
Classification: OXIDOREDUCTASE
Source organism: Streptomyces albidoflavus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2022-03-30
Authors: Zhang, J., Chen, R.C., Gao, S.S.
PDB entry 7xe9: T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, DMSO 20%
Classification: HYDROLASE
Source organism: Escherichia virus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-03-30
Authors: Tamada, T., Hiromoto, T.
PDB entry 7xea: T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, DMSO 40%, and then backsoaking
Classification: HYDROLASE
Source organism: Escherichia virus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2022-03-30
Authors: Tamada, T., Hiromoto, T.
PDB entry 7xeb: Collagenase from Grimontia (Vibrio) hollisae 1706B complexed with Gly-Pro-Hyp
Classification: HYDROLASE
Source organism: Grimontia hollisae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2022-03-30
Authors: Ikeuchi, T., Yasumoto, M., Takita, T., Mizutani, K., Mikami, B., Tanaka, K., Hattori, S., Yasukawa, K.
PDB entry 7xec: Cryo-EM structure of human ABCD1 E630Q in the presence of ATP in inward-facing state 2
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2022-03-30
Authors: Chao, X., Li-Na, J., Lin, T.
PDB entry 7xed: Crystal Structure of OsCIE1-Ubox and OsUBC8 complex
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-03-30
Authors: Zhang, Y., Yu, C.Z.
PDB entry 7xee: Crystal Structure of the Y53F/N55A mutant of LEH complexed with 2-(3-phenyloxetan-3-yl)ethanamine
Classification: HYDROLASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.877 Å
Deposited: 2022-03-31
Authors: Qu, G., Li, X., Sun, Z.T.
PDB entry 7xef: Crystal Structure of the Y53F/N55A mutant of LEH complexed with (R)-(1-benzyl-3-phenylpyrrolidin-3-yl)methanol
Classification: HYDROLASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.816 Å
Deposited: 2022-03-31
Authors: Qu, G., Li, X., Sun, Z.T.
PDB entry 7xeg: SARS-CoV-2-Beta-RBD and CB6-092-Fab complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2022-03-31
Authors: Wang, Y., Feng, Y.
PDB entry 7xei: SARS-CoV-2-prototyped-RBD and CB6-092-Fab complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2022-03-31
Authors: Wang, Y., Feng, Y.