LiteFold/PDB huggingface dataset:
PDB entry 8y8i: Structure of HCoV-HKU1C spike in the glycan-activated-3up conformation
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Sun, L., Yang, H.T.
PDB entry 8y8j: Local structure of HCoV-HKU1C spike in complex with glycan
Classification: VIRAL PROTEIN
Source organism: Human coronavirus HKU1 (isolate N5)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2024-02-06
Authors: Lu, Y.C., Zhang, X., Wang, H.F., Sun, L., Yang, H.T.
PDB entry 8y8k: The structure of hAE3
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-02-06
Authors: Jian, L., Zhang, Q., Yao, D., Wang, Q., Xia, Y., Qin, A., Cao, Y.
PDB entry 8y8m: Crystal structure of a benzaldehyde lyase mutant M3 from Herbiconiux sp. SALV-R1
Classification: LYASE
Source organism: Herbiconiux sp. SALV-R1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-02-06
Authors: Li, Y., Zhang, Y.F., Chen, Y.Y., Liu, W.D., Yao, P.Y., Wu, Q.Q., Zhu, D.M.
PDB entry 8y8n: Cryo-EM structure of AQP3 in DDM micelle
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8y8o: Cryo-EM structure of AQP3 in POPC nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8y8p: Cryo-EM structure of AQP3 Y212F in POPC nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8y8q: Cryo-EM structure of AQP3 Y212T in POPC nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8y8r: Cryo-EM structure of AQP3 Y212T in DDM micelle
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8y8s: Cryo-EM structure of AQP3 in DMPC nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8y8v: Cryo-EM structure of AQP7 in POPC nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyosh, Y.
PDB entry 8y8w: Cryo-EM structure of GlpF in POPC nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8y8x: Cryo-EM structure of GlpF with P177 deletion in POPC nanodisc
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2024-02-06
Authors: Kozai, D., Suzuki, S., Kamegawa, A., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.
PDB entry 8y8y: Crystal structure of the PTPN21 FERM domain
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.099 Å
Deposited: 2024-02-06
Authors: Lee, H.S., Ku, B.
PDB entry 8y8z: Structure of NET-Maprotiline in outward-open state
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-02-06
Authors: Zhang, H., Xu, E.H., Jiang, Y.
PDB entry 8y90: Structure of NET-Nefopam in outward-open state
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-02-06
Authors: Zhang, H., Xu, E.H., Jiang, Y.
PDB entry 8y91: Structure of NET-nomifensine in outward-open state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-02-06
Authors: Zhang, H., Xu, E.H., Jiang, Y.
PDB entry 8y92: structure of NET-Atomoxetine in outward-open state
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-02-06
Authors: Zhang, H., Xu, E.H., Jiang, Y.
PDB entry 8y93: Structure of NET-Amitriptyline in outward-open state
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-02-06
Authors: Zhang, H., Xu, E.H., Jiang, Y.
PDB entry 8y94: Structure of Apo human norepinephrine transporter NET
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-02-06
Authors: Zhang, H., Xu, H.E., Jiang, Y.
PDB entry 8y95: Structure of NET-NE in Occluded state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-02-06
Authors: Zhang, H., Xu, H.E., Jiang, Y.
PDB entry 8y96: Crystal structure of a heterooligomeric aminotransferase from Serratia sp. ATCC 39006
Classification: TRANSFERASE
Source organism: Serratia sp. ATCC 39006
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2024-02-06
Authors: Pramono, H., Yoshida, A., Nishiyama, M.
PDB entry 8y97: Crystal structure of a heterooligomeric aminotransferase from Serratia sp. ATCC 39006, PMP-bound form
Classification: TRANSFERASE
Source organism: Serratia sp. ATCC 39006
Experimental method: X-RAY DIFFRACTION
Resolution: 2.83 Å
Deposited: 2024-02-06
Authors: Pramono, H., Yoshida, A., Nishiyama, M.
PDB entry 8y98: Crystal structure of a heterooligomeric aminotransferase from Serratia sp. ATCC 39006, PPE-bound form
Classification: TRANSFERASE
Source organism: Serratia sp. ATCC 39006
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-02-06
Authors: Pramono, H., Yoshida, A., Nishiyama, M.
PDB entry 8y9a: The Crystal Structure of USP8 from Biortus.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-02-06
Authors: Wang, F., Cheng, W., Lv, Z., Ju, C., Bao, C.
PDB entry 8y9b: TcdB1 in complex with mini-binder
Classification: TOXIN/DE NOVO PROTEIN
Source organism: Clostridioides difficile; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-02-06
Authors: Lv, X.C., Lu, P.L.
PDB entry 8y9c: De novo design mini-binder in complex with TcdB4
Classification: TOXIN/DE NOVO PROTEIN
Source organism: Clostridioides difficile; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-02-06
Authors: Lv, X.C., Lu, P.L.
PDB entry 8y9d: Versatile Aromatic Prenyltransferase auraA in complex with DMAPP and cyclo-(L-Val-L-His)
Classification: TRANSFERASE
Source organism: Penicillium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2024-02-06
Authors: Li, D., Zhang, Y., Wang, W., Wang, P.
PDB entry 8y9e: Versatile Aromatic Prenyltransferase auraA for Imidazole-Containing Diketopiperazines
Classification: TRANSFERASE
Source organism: Penicillium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-02-06
Authors: Li, D., Zhang, Y., Wang, W., Wang, P.
PDB entry 8y9f: ATAT-2 bound MEC-12/MEC-7 microtubule
Classification: STRUCTURAL PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-02-06
Authors: Lam, W.H., Yu, D., Zhai, Y., Ti, S.
PDB entry 8y9g: Versatile Aromatic Prenyltransferase auraA in complex with DMSPP and cyclo-(L-Val-DH-His)
Classification: TRANSFERASE
Source organism: Penicillium
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-02-06
Authors: Li, D., Zhang, Y., Wang, W., Wang, P.
PDB entry 8y9j: Structure of the Ebola virus nucleocapsid subunit
Classification: VIRAL PROTEIN/RNA
Source organism: Homo sapiens; Zaire ebolavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-02-06
Authors: Fujita-Fujiharu, Y., Hu, S., Hirabayashi, A., Takamatsu, Y., Ng, Y., Houri, K., Muramoto, Y., Nakano, M., Sugita, Y., Noda, T.
PDB entry 8y9k: Crystal structure of the BmCPV1 NSP9 homodimer
Classification: VIRAL PROTEIN
Source organism: Bombyx mori cypovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-07
Authors: Guo, H., Wang, Y., Ji, X.
PDB entry 8y9l: Cas12h1-crRNA binary complex
Classification: IMMUNE SYSTEM/RNA
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-02-07
Authors: Zheng, W.W., Liu, M.X.
PDB entry 8y9m: Cas12h1(D465A)-crRNA-dsDNA ternary complex
Classification: IMMUNE SYSTEM/RNA/DNA
Source organism: unidentified; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2024-02-07
Authors: Zheng, W.W., Liu, M.X.
PDB entry 8y9n: Cas12h1-crRNA-dsDNA ternary complex
Classification: IMMUNE SYSTEM/RNA/DNA
Source organism: unidentified; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-02-07
Authors: Zheng, W.W., Liu, M.X.
PDB entry 8y9o: Crystal structure of AtKAI2 in complex with KK181N1
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-07
Authors: Wang, J.W., Miyakawa, T., Asami, T.
PDB entry 8y9p: Crystal structure of bacterial activating sulfotransferase SgdX2
Classification: TRANSFERASE
Source organism: Micromonospora sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-02-07
Authors: Mori, T., Teramoto, T., Kakuta, Y.
PDB entry 8y9q: b-glucosidase from Thermotoga profunda Tp-BGL
Classification: HYDROLASE
Source organism: Thermotoga profunda
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-02-07
Authors: Guo, Y., Chen, A.
PDB entry 8y9r: Crystal structure of Spiral2 microtubule-binding domain from Physcomitrella patens
Classification: PLANT PROTEIN
Source organism: Physcomitrium patens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.799 Å
Deposited: 2024-02-07
Authors: Hayashi, I.
PDB entry 8y9s: Crystal structure of nanobody MY6321 bound to human serum albumin (HSA)
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2024-02-07
Authors: Ding, Y., Zhong, P.Y.
PDB entry 8y9t: Crystal structure of nanobody MY6322 bound to human serum albumin (HSA)
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-02-07
Authors: Ding, Y., Zhong, P.Y.
PDB entry 8y9u: Crystal structure of nanobody MY6323 bound to human serum albumin (HSA)
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-02-07
Authors: Ding, Y., Zhong, P.Y.
PDB entry 8y9v: ZIKV NS2B/NS3 protease
Classification: HYDROLASE
Source organism: synthetic construct; Zika virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-07
Authors: Zhang, C.Y., Xu, Q., Wang, W.W., Zhou, H., Wang, Q.S.
PDB entry 8y9w: CRYSTAL STRUCTURE OF A LYSOZYME FROM HEN EGG WHITE
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-07
Authors: Zhang, C.Y., Xu, Q., Zhou, H., Wang, Q.S.
PDB entry 8y9x: Crystal structure of the complex of lactoperoxidase with four inorganic substrates, SCN, I, Br and Cl
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-07
Authors: Viswanathan, V., Singh, A.K., Pandey, N., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
PDB entry 8y9y: Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+1C)
Classification: PROTEIN TRANSPORT
Source organism: Bacillus subtilis subsp. subtilis str. 168; Escherichia coli K-12; Geobacillus thermodenitrificans NG80-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-02-07
Authors: Ou, X., Ma, C., Sun, D., Xu, J., Wu, X., Gao, N., Li, L.
PDB entry 8y9z: Structure of the SecA-SecY complex with the substrate HmBRI-3TM
Classification: PROTEIN TRANSPORT
Source organism: Bacillus subtilis subsp. subtilis str. 168; Geobacillus thermodenitrificans NG80-2; Haloarcula marismortui ATCC 43049; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-02-07
Authors: Ou, X., Ma, C., Sun, D., Xu, J., Wu, X., Gao, N., Li, L.
PDB entry 8ya0: Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+7C)
Classification: PROTEIN TRANSPORT
Source organism: Aequorea victoria; Bacillus subtilis subsp. subtilis str. 168; Escherichia coli K-12; Geobacillus thermodenitrificans NG80-2; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-02-07
Authors: Ou, X., Ma, C., Sun, D., Xu, J., Wu, X., Gao, N., Li, L.
PDB entry 8ya1: HEN EGG WHITE LYSOZYME
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-02-07
Authors: Zhang, C.Y., Xu, Q., Wang, W.W., Zhou, H.
PDB entry 8ya2: Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+20C)
Classification: PROTEIN TRANSPORT
Source organism: Aequorea victoria; Bacillus subtilis subsp. subtilis str. 168; Escherichia coli K-12; Geobacillus thermodenitrificans NG80-2; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2024-02-07
Authors: Ou, X., Ma, C., Sun, D., Xu, J., Wu, X., Gao, N., Li, L.
PDB entry 8ya3: Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+7C) treated with DTT
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli K-12; Geobacillus thermodenitrificans NG80-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-02-07
Authors: Ou, X., Ma, C., Sun, D., Xu, J., Wu, X., Gao, N., Li, L.
PDB entry 8ya4: Crystal structure of a lysozyme form hen egg white
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-02-07
Authors: Zhang, C.Y., Xu, Q., Wang, W.W., Zhou, H.
PDB entry 8ya5: Mpro from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2024-02-07
Authors: Zhang, C.Y., Xu, Q., Wang, W.W., Zhou, H., Wang, Q.S.
PDB entry 8ya6: endo-1,3-fucanase Fun168A
Classification: HYDROLASE
Source organism: Wenyingzhuangia fucanilytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2024-02-07
Authors: Chen, G.N., Chang, Y.G.
PDB entry 8ya7: endo-1,3-fucanase Fun168A,complex with fucotetraose
Classification: HYDROLASE
Source organism: Wenyingzhuangia fucanilytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-02-07
Authors: Chen, G.N., Chang, Y.G.
PDB entry 8ya8: The crystal structure of human Rtel1 HHD2 domain
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-02-08
Authors: Chun, I.S., Kim, M.S.
PDB entry 8yaa: Cryo-EM structure of MIK2-SCOOP12-BAK1
Classification: TRANSFERASE/PLANT PROTEIN
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2024-02-08
Authors: Jia, F.S., Xiao, Y., Chai, J.J.
PDB entry 8yab: AP5 complex bound to SPG11-SPG15
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-02-08
Authors: Su, M.-Y.
PDB entry 8yac: Funes-induced Orb2 amyloid like endogenous Orb2 amyloid
Classification: PROTEIN FIBRIL
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-02-08
Authors: Hervas, R., Si, K.
PDB entry 8yad: structure of SPG11-SPG15 complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2024-02-08
Authors: Su, M.-Y.
PDB entry 8yae: Cryo-ET structure of huntingtin actin complex
Classification: CYTOSOLIC PROTEIN/CONTRACTILE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.08 Å
Deposited: 2024-02-09
Authors: Kim, J., Kim, H., Fassler, F., Hansen, J.M., Schur, F.K.M., Song, J.J.
PDB entry 8yaf: SOD1, Nanobody1 and Nanobody2 complex
Classification: OXIDOREDUCTASE/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.28 Å
Deposited: 2024-02-09
Authors: Cheng, S.
PDB entry 8yag: Cryo-electron microscopic structure of an amide hydrolase from Pseudoxanthomonas wuyuanensis
Classification: HYDROLASE
Source organism: Pseudoxanthomonas wuyuanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2024-02-09
Authors: Dai, L.H., Xu, Y.H., Hu, Y.M., Niu, D., Yang, X.C., Shen, P.P., Li, X., Xie, Z.Z., Li, H., Guo, R.-T., Chen, C.-C.
PDB entry 8yah: full length AP5 complex bound to SPG11-SPG15
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-02-09
Authors: Su, M.-Y.
PDB entry 8yai: Crystal structure of glucose 1-dehydrogenase mutant1 from Limosilactobacillus fermentum
Classification: HYDROLASE
Source organism: Limosilactobacillus fermentum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-02-09
Authors: Cong, L., Wang, J.J., Wei, H.L., Liu, W.D., You, S.
PDB entry 8yaj: ATAT-2 bound MEC-12/MEC-7 microtubule without acetyl-CoA
Classification: STRUCTURAL PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-02-09
Authors: Lam, W.H., Yu, D., Zhai, Y., Ti, S.
PDB entry 8yak: Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Classification: HYDROLASE
Source organism: Pseudoxanthomonas wuyuanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2024-02-09
Authors: Dai, L.H., Xu, Y.H., Hu, Y.M., Niu, D., Yang, X.C., Shen, P.P., Li, X., Xie, Z.Z., Li, H., Guo, R.-T., Chen, C.-C.
PDB entry 8yal: ATAT-2 bound K40Q MEC-12/MEC-7 microtubule
Classification: STRUCTURAL PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-02-09
Authors: Lam, W.H., Yu, D., Zhai, Y., Ti, S.
PDB entry 8yam: Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-02-09
Authors: Numata, T., Parmar, S., Schneekloth, J.S.
PDB entry 8yan: Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-02-09
Authors: Numata, T., Schneekloth, J.S.
PDB entry 8yao: Cryo-ET structure of huntingtin actin dimer complex
Classification: CYTOSOLIC PROTEIN/CONTRACTILE PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 20.8 Å
Deposited: 2024-02-09
Authors: Kim, J., Kim, H., Fassler, F., Hansen, J.M., Schur, F.K.M., Song, J.J.
PDB entry 8yap: Structure of human PALB2 coiled-coil domain
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-02-09
Authors: Reddy, P.P., Das, R.
PDB entry 8yaq: Cryo-EM structure of cellodextrin phosphorylase from Clostridium thermocellum with cellodextrin ligands
Classification: CARBOHYDRATE
Source organism: Acetivibrio thermocellus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-02-09
Authors: Kuga, T., Sunagawa, N., Igarashi, K.
PDB entry 8yar: ATAT-2 bound K40R MEC-12/MEC-7 microtubule
Classification: STRUCTURAL PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-02-09
Authors: Lam, W.H., Yu, D., Zhai, Y., Ti, S.
PDB entry 8yas: Structure of the SecA-SecY complex with the substrate HmBRI-7TM
Classification: PROTEIN TRANSPORT
Source organism: Bacillus subtilis subsp. subtilis str. 168; Geobacillus thermodenitrificans NG80-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-02-10
Authors: Ou, X., Ma, C., Sun, D., Xu, J., Wu, X., Gao, N., Li, L.
PDB entry 8yat: SOD1, Nanobody1, Nanobody2 and Nanobody3 complex
Classification: OXIDOREDUCTASE/IMMUNE SYSTEM
Source organism: Camelus dromedarius; Homo sapiens; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.94 Å
Deposited: 2024-02-10
Authors: Cheng, S.
PDB entry 8yau: Crystal structure of glucose 1-dehydrogenase mutant2 from Limosilactobacillus fermentum
Classification: HYDROLASE
Source organism: Limosilactobacillus fermentum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2024-02-10
Authors: Cong, L., Wei, H.L., Liu, W.D., You, S.
PDB entry 8yav: Crystal structure of glucose 1-dehydrogenase from Limosilactobacillus fermentum
Classification: HYDROLASE
Source organism: Limosilactobacillus fermentum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-02-10
Authors: Cong, L., Wang, J.J., Wei, H.L., Liu, W.D., You, S.
PDB entry 8yax: SARS-CoV-2 DMV nsp3-4 pore complex (full-pore)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2024-02-10
Authors: Huang, Y.X., Zhong, L.J., Zhang, W.X., Ni, T.
PDB entry 8yay: XFEL crystal structure of the oxidized form of F393H P450BM3 with N-enanthyl-L-prolyl-L-phenylalanine in complex with styrene
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-02-11
Authors: Nagao, S., Kuwano, W., Tosha, T., Yamashita, K., Stanfield, J.K., Kasai, C., Ariyasu, S., Shoji, O., Sugimoto, H., Kubo, M.
PDB entry 8yaz: XFEL crystal structure of the oxidized form of F87A/F393H P450BM3 with N-enanthyl-L-prolyl-L-phenylalanine in complex with styrene
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-02-11
Authors: Nagao, S., Kuwano, W., Tosha, T., Yamashita, K., Stanfield, J.K., Kasai, C., Ariyasu, S., Shoji, O., Sugimoto, H., Kubo, M.
PDB entry 8yb0: XFEL crystal structure of the reduced form of F393H P450BM3 with N-enanthyl-L-prolyl-L-phenylalanine in complex with styrene
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-02-11
Authors: Nagao, S., Kuwano, W., Tosha, T., Yamashita, K., Stanfield, J.K., Kasai, C., Ariyasu, S., Shoji, O., Sugimoto, H., Kubo, M.
PDB entry 8yb1: XFEL crystal structure of the reduced form of F87A/F393H P450BM3 with N-enanthyl-L-prolyl-L-phenylalanine in complex with styrene
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-02-11
Authors: Nagao, S., Kuwano, W., Tosha, T., Yamashita, K., Stanfield, J.K., Kasai, C., Ariyasu, S., Shoji, O., Sugimoto, H., Kubo, M.
PDB entry 8yb2: XFEL crystal structure of the oxygen-bound form of F393H P450BM3 with N-enanthyl-L-prolyl-L-phenylalanine in complex with styrene
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-11
Authors: Nagao, S., Kuwano, W., Tosha, T., Yamashita, K., Stanfield, J.K., Kasai, C., Ariyasu, S., Shoji, O., Sugimoto, H., Kubo, M.
PDB entry 8yb3: XFEL crystal structure of the oxygen-bound form of F87A/F393H P450BM3 with N-enanthyl-L-prolyl-L-phenylalanine in complex with styrene
Classification: OXIDOREDUCTASE
Source organism: Priestia megaterium NBRC 15308 = ATCC 14581
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-02-11
Authors: Nagao, S., Kuwano, W., Tosha, T., Yamashita, K., Stanfield, J.K., Kasai, C., Ariyasu, S., Shoji, O., Sugimoto, H., Kubo, M.
PDB entry 8yb4: Pfr conformer of Arabidopsis thaliana phytochrome B in complex with phytochrome-interacting factor 6
Classification: GENE REGULATION
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-02-11
Authors: Wang, Z., Wang, W., Zhao, D., Song, Y., Xu, B., Zhao, J., Wang, J.
PDB entry 8yb5: SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C6 symmetry)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-02-11
Authors: Huang, Y.X., Zhong, L.J., Zhang, W.X., Ni, T.
PDB entry 8yb6: Type I-EHNH Cascade complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Candidatus Cloacimonetes bacterium ADurb.Bin088
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2024-02-11
Authors: Li, Z.
PDB entry 8yb7: SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C3 symmetry)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-02-12
Authors: Huang, Y.X., Zhong, L.J., Zhang, W.X., Ni, T.
PDB entry 8ybb: Crystal structure of the sigma-1 receptor from Xenopus laevis with side opening
Classification: MEMBRANE PROTEIN
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12 Å
Deposited: 2024-02-12
Authors: Xiao, Y., Fu, C., Sun, Z., Zhou, X.
PDB entry 8ybc: Crystal structure of coiled coil domain of Golm1 (Golgi membrane protein 1)
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-02-12
Authors: Xie, X., Bai, W.F., Shi, N.
PDB entry 8ybe: Cryo-EM structure of Maltose Binding Protein
Classification: SUGAR BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-02-13
Authors: Yoo, Y., Park, K., Kim, H.
PDB entry 8ybf: Crystal structure of canine distemper virus hemagglutinin
Classification: VIRAL PROTEIN
Source organism: Morbillivirus canis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-02-13
Authors: Fukuhara, H., Yumoto, K., Sako, M., Kajikawa, M., Ose, T., Hashiguchi, T., Kamishikiryo, J., Maita, N., Kuroki, K., Maenaka, K.
PDB entry 8ybg: Crystal structure of lysozyme by serial synchrotron crystallography
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-02-14
Authors: Nam, K.H.
PDB entry 8ybh: Crystal structure of lysozyme by macromolecular crystallography
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-02-14
Authors: Nam, K.H.
PDB entry 8ybj: Cryo-EM structure of human nucleosome core particle composed of the Widom 601 DNA sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2024-02-14
Authors: Kimura, T., Hirai, S., Kujirai, T., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8ybk: Cryo-EM structure of the human nucleosome containing the H3.1 E97K mutant
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2024-02-14
Authors: Kimura, T., Hirai, S., Kujirai, T., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8ybl: Crystal structure of nanobody SEB-Nb3 bound to staphylococcal enterotoxin B (SEB)
Classification: ANTITOXIN
Source organism: Staphylococcus aureus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.33 Å
Deposited: 2024-02-15
Authors: Ding, Y., Zong, X., Liu, R., Liu, P.
PDB entry 8ybm: Crystal structure of nanobody SEB-Nb6 bound to staphylococcal enterotoxin B (SEB)
Classification: ANTITOXIN
Source organism: Staphylococcus aureus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-02-15
Authors: Ding, Y., Zong, X., Liu, R., Liu, P.
PDB entry 8ybn: Crystal structure of nanobody SEB-Nb8 bound to staphylococcal enterotoxin B (SEB)
Classification: ANTITOXIN
Source organism: Staphylococcus aureus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-02-15
Authors: Ding, Y., Zong, X., Liu, R., Liu, P.
PDB entry 8ybo: Crystal structure of nanobody SEB-Nb11 bound to staphylococcal enterotoxin B (SEB)
Classification: ANTITOXIN
Source organism: Staphylococcus aureus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-02-15
Authors: Ding, Y., Zong, X., Liu, R., Liu, P.
PDB entry 8ybp: Crystal structure of nanobody SEB-Nb20 bound to staphylococcal enterotoxin B (SEB)
Classification: ANTITOXIN
Source organism: Staphylococcus aureus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-02-15
Authors: Ding, Y., Zong, X., Liu, R., Liu, P.
PDB entry 8ybq: Choline transporter BetT - CHT bound
Classification: CHOLINE-BINDING PROTEIN
Source organism: Pseudomonas syringae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2024-02-16
Authors: Yang, T.J., Nian, Y.W., Lin, H.J., Li, J., Zhang, J.R., Fan, M.R.
PDB entry 8ybr: Choline transporter BetT
Classification: CHOLINE-BINDING PROTEIN
Source organism: Pseudomonas syringae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2024-02-16
Authors: Yang, T.J., Nian, Y.W., Lin, H.J., Li, J., Zhang, J.R., Fan, M.R.
PDB entry 8ybs: State - I: Spike 2-up RBD with THSC20.HVTR04 (Fab4)
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.54 Å
Deposited: 2024-02-16
Authors: Rencilin, C.F., Bhattacharya, J., Dutta, S.
PDB entry 8ybx: Structure of the FADD/Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-02-16
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8yby: State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) - single Fab masked
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-02-16
Authors: Rencilin, C.F., Bhattacharya, J., Dutta, S.
PDB entry 8ybz: State - II: Spike 3-up RBD with THSC20.HVTR26 (Fab26)
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2024-02-16
Authors: Rencilin, C.F., Bhattacharya, J., Dutta, S.
PDB entry 8yc0: T cell receptor V delta2 V gamma9 in GDN
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2024-02-17
Authors: Xin, W., Huang, B., Chi, X., Xu, M., Zhang, Y., Li, X., Su, Q., Zhou, Q.
PDB entry 8yc1: Acid phosphate hydrolase from Shigella flexneri (apo)
Classification: HYDROLASE
Source organism: Shigella flexneri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-02-17
Authors: Du, W.Y., Pan, X.M., Dong, L.B.
PDB entry 8ycm: Monomeric Human STK19
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-02-18
Authors: Li, J., Ma, X., Dong, Z.
PDB entry 8ycp: structure of human trpv1 in complex with BC5
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-02-18
Authors: Ke, B.W., Hu, S.L.
PDB entry 8ycv: HosA transcriptional regulator from enteropathogenic Escherichia coli O127:H6 (strain E2348/69) bound with 4-hydroxy benzoic acid - Conformation II at 2.16 angstrom resolution (STARANISO processed)
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli O127:H6 str. E2348/69
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2024-02-18
Authors: Brito, J.A., Goswami, A.
PDB entry 8ycx: CryoEM structure of M. tuberculosis ClpC1P1P2 complex bound to bortezomib, conformation 2
Classification: HYDROLASE
Source organism: Bos grunniens; Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-02-18
Authors: Zhou, B., Zhao, H., Gao, Y., Chen, X., Zhang, T., He, J., Xiong, X.
PDB entry 8yd0: CryoEM structure of M. tuberculosis ClpXP1P2 complex bound to bortezomib
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2024-02-18
Authors: Zhou, B., Zhao, H., Gao, Y., Chen, X., Zhang, T., He, J., Xiong, X.
PDB entry 8yd1: CryoEM structure of M. tuberculosis ClpC1P1P2 complex bound to bortezomib, conformation 1
Classification: HYDROLASE
Source organism: Bos grunniens; Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-02-19
Authors: Zhou, B., Zhao, H., Gao, Y., Chen, X., Zhang, T., He, J., Xiong, X.
PDB entry 8yd2: CryoEM structure of M. tuberculosis ClpP1P2 bound to bortezomib
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2024-02-19
Authors: Zhou, B., Gao, Y., Zhao, H., Chen, W., He, J., Zhang, T., Xiong, X.
PDB entry 8yd3: Crystal structure of human Cu-Zn Superoxide Dismutase 1 in complex with 1,2,10-Decanetriol
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-02-19
Authors: Aouti, S., Padmanabhan, B.
PDB entry 8yd4: CryoEM structure of apo M. tuberculosis ClpP1P2
Classification: HYDROLASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2024-02-19
Authors: Zhou, B., Gao, Y., Zhao, H., Chen, X., He, J., Zhang, T., Xiong, X.
PDB entry 8yd6: Solution structure of peptide H30 by Nuclear Magnetic Resonance Spectroscopy
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2024-02-19
Authors: Sze, K.H., Zhao, H.
PDB entry 8yd7: Structure of FADD/Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2024-02-19
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8yd8: Structure of FADD/Caspase-8/cFLIP death effector domain assembly
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2024-02-19
Authors: Lin, S.-C., Yang, C.-Y.
PDB entry 8yd9: Crystal structure of p38alpha with an allosteric inhibitor 3
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-02-19
Authors: Hasegawa, S., Kinoshita, T.
PDB entry 8ydb: Type I-FHNH Cascade-dsDNA intermediate complex
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Selenomonas sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-19
Authors: Li, Z.
PDB entry 8ydc: Crystal structure of a hammerhead ribozyme with pseudoknot
Classification: RNA
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2024-02-20
Authors: Liu, Y., Zhan, X.
PDB entry 8ydd: Crystal structure of Nanog(R100A) in complex with Wdr5
Classification: NUCLEAR PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-02-20
Authors: Wang, D., Shi, X., Zhao, L., Wu, B., Chen, Y.
PDB entry 8yde: E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2024-02-20
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8ydf: E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-02-20
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8ydg: E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2024-02-20
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8ydh: E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.55 Å
Deposited: 2024-02-20
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8ydi: E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-02-20
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8ydj: E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Classification: RIBOSOME
Source organism: Escherichia coli K-12; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.1 Å
Deposited: 2024-02-20
Authors: Zhang, J., Lu, G., Wang, C., Lin, J.
PDB entry 8ydk: Crystal structure of a novel design for RSV F protein in pre-fusion state
Classification: VIRAL PROTEIN
Source organism: Human respiratory syncytial virus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-02-20
Authors: Qi, J.X., Li, J.
PDB entry 8ydl: Crystal structure of single-chain dimer for RSV F protein
Classification: VIRAL PROTEIN
Source organism: Respiratory syncytial virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-02-20
Authors: Qi, J.X., Li, J., Zhao, J.R., Guo, W.J.
PDB entry 8ydm: Cryo-EM structure of CaRC-LH complex from Chloroflexus aurantiacus
Classification: PHOTOSYNTHESIS
Source organism: Chloroflexus aurantiacus J-10-fl
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-02-20
Authors: Guoqiang, H., Shishang, D.
PDB entry 8ydn: Crystal structure of a STING from C. gigas in complex with c-di-GMP
Classification: ANTIVIRAL PROTEIN
Source organism: Crassostrea gigas
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-02-21
Authors: Zhang, Y., Yu, F.
PDB entry 8ydo: Crystal structure of dKeima570
Classification: FLUORESCENT PROTEIN
Source organism: Montipora sp. 20
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-21
Authors: Nam, K.H.
PDB entry 8ydp: Crystal structure of the receptor binding domain of SARS-CoV-2 spike protein in complex with Ce9
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-02-21
Authors: Nakamura, S., Numoto, N., Fujiyoshi, Y.
PDB entry 8ydq: Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron BA.2 variant spike protein in complex with Ce149
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-21
Authors: Nakamura, S., Numoto, N., Fujiyoshi, Y.
PDB entry 8ydr: Crystal structure of the receptor binding domain of SARS-CoV-2 Alpha variant spike protein in complex with Ce59
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-02-21
Authors: Nakamura, S., Numoto, N., Fujiyoshi, Y.
PDB entry 8yds: Crystal structure of the receptor binding domain of SARS-CoV-2 Delta variant spike protein in complex with Ce59
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-02-21
Authors: Nakamura, S., Numoto, N., Fujiyoshi, Y.
PDB entry 8ydt: Crystal structure of the receptor binding domain of SARS-CoV-2 Alpha variant spike protein in complex with Ce41
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-02-21
Authors: Nakamura, S., Numoto, N., Fujiyoshi, Y.
PDB entry 8ydu: Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron BA.2 variant spike protein in complex with CeSPIACE
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-02-21
Authors: Nakamura, S., Numoto, N., Fujiyoshi, Y.
PDB entry 8ydv: Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron BA.5 variant spike protein in complex with CeSPIACE
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-02-21
Authors: Nakamura, S., Numoto, N., Fujiyoshi, Y.
PDB entry 8ydw: Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron XBB.1.5 variant spike protein in complex with CeSPIACE
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-02-21
Authors: Nakamura, S., Numoto, N., Fujiyoshi, Y.
PDB entry 8ydx: Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.2 variant) in complex with CeSPIACE
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2024-02-21
Authors: Suzuki, H., Nakamura, S., Fujiyoshi, Y.
PDB entry 8ydy: Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE, class 1
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2024-02-21
Authors: Suzuki, H., Nakamura, S., Fujiyoshi, Y.
PDB entry 8ydz: Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE, class 2
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.2 Å
Deposited: 2024-02-21
Authors: Suzuki, H., Nakamura, S., Fujiyoshi, Y.
PDB entry 8ye0: Crystal structure of KgpF prenyltransferase
Classification: TRANSFERASE
Source organism: Microcystis aeruginosa NIES-88
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-02-21
Authors: Hamada, K., Inoue, S., Goto, Y., Suga, H., Ogata, K., Sengoku, T.
PDB entry 8ye3: Cryo-EM structure of human respiratory syncytial virus fusion protein variant
Classification: VIRAL PROTEIN
Source organism: human respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-02-21
Authors: Li, Q.M., Su, J.G., Zhang, J., Liang, Y., Shao, S., Li, X.Y., Zhao, Z.X.
PDB entry 8ye4: The complex of TCR NYN-I and HLA-A24 bound to SARS-CoV-2 Spike448-456 peptide NYNYLYRLF
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-02-21
Authors: Deng, S.S., Jin, T.C., Xu, Z.H., Wang, M.H.
PDB entry 8ye5: Structural and functional research of Reductive Dehalogenases TmrC using a cell-free expression system for heterologous expression
Classification: GENE REGULATION
Source organism: Dehalobacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-02-21
Authors: Zhang, X.Y., Liu, Y.Q.
PDB entry 8ye6: Cryo-EM structure of Cas9-sgRNA-A32 complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Streptococcus; Streptococcus pyogenes; Streptococcus pyogenes serotype M1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-02-22
Authors: Zheng, J., Zhu, Y., Huang, Z.
PDB entry 8ye8: Crystal structure of mouse BAHCC1 TTD domain in complex with H4K20me1 peptide
Classification: PROTEIN BINDING
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.90001 Å
Deposited: 2024-02-22
Authors: Zhang, Z.-M., Song, J.
PDB entry 8ye9: Cryo-EM structure of Cas9-sgRNA-A25 complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Streptococcus pyogenes; Streptococcus pyogenes serotype M1; Streptococcus sp. F0441
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2024-02-22
Authors: Zheng, J., Zhu, Y., Huang, Z.
PDB entry 8yea: Room temperature structure of TsaGH11 determined by macromolecular crystallography
Classification: HYDROLASE
Source organism: Thermoanaerobacterium saccharolyticum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-02-22
Authors: Nam, K.H.
PDB entry 8yeb: Crystal structure of L-ribulose 3-epimerase from Arthrobacter globiformis M30
Classification: ISOMERASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-02-22
Authors: Watanabe, M., Nakamich, Y., Mine, S.
PDB entry 8yec: Crystal structure of L-ribulose 3-epimerase in complex with D-allulose
Classification: ISOMERASE
Source organism: Arthrobacter globiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-02-22
Authors: Watanabe, M., Nakamichi, Y., Mine, S.
PDB entry 8yee: Cryo-EM structure of in vitro reconstituted Light-harvesting complex II trimer
Classification: PHOTOSYNTHESIS
Source organism: Spinacia oleracea
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2024-02-22
Authors: Seki, S., Miyata, T., Tanaka, H., Namba, K., Kurisu, G., Fujii, R.