LiteFold/PDB huggingface dataset:
PDB entry 9d48: Atomic model of Ketoacyl Reductase domain and 4 helical bundle of Candida albicans Fatty Acid Synthase (FAS) in complex with Palmitoyl-CoA (in vivo binding)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Candida albicans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2024-08-12
Authors: Hasan, N.S.M., Keszei, F.A.A., Mazhab-Jafari, M.T.
PDB entry 9d49: Atomic model of triple mutant S. cerevisiae Fatty Acid Synthase (FAS) in complex with Palmitoyl-CoA (in vitro binding)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2024-08-12
Authors: Hasan, N.S.M., Keszei, F.A.A., Mazhab-Jafari, M.T.
PDB entry 9d4a: Atomic model of Ketoacyl Reductase domain and 4 helical bundle of S. cerevisiae Fatty Acid Synthase (FAS) in complex with octanoyl-CoA (in vitro binding)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-08-12
Authors: Hasan, N.S.M., Keszei, F.A.A., Mazhab-Jafari, M.T.
PDB entry 9d4b: Discovery of SMD-3236, a Potent, Highly Selective and Efficacious SMARCA2 Degrader for the Treatment of SMARC4-Deficient Human Cancers
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-08-12
Authors: Strickland, C.
PDB entry 9d4c: Proteasome core particle assembly intermediate Blm10:alpha-ring purified from Saccharomyces cerevisiae.
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-08-12
Authors: Chen, X., Kaur, M., Roelofs, J., Walters, K.J.
PDB entry 9d4d: Crystal structure of the catalytic region of human MASP-2 with specific inhibitor Compound S3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-08-12
Authors: Sawyer, T.K., Wibowo, A.S., Carter, J., Moussa, S.H.
PDB entry 9d4e: Crystal structure of the human DCAF1 WDR domain in complex with OICR-41103
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-08-12
Authors: Kimani, S., Dong, A., Li, Y., Seitova, A., Al-awar, R., Mamai, A., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9d4i: Crystal structure of Ni(II)-bound polysaccharide deacetylase from Bacteroides ovatus
Classification: HYDROLASE
Source organism: Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-08-12
Authors: Dzuong, E., McLaughlin, K.J.
PDB entry 9d4n: The cryo-EM structure of the yeast Dmc1 filament bound to ssDNA in the presence of ATP
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-12
Authors: Shin, Y., Greene, E.C.
PDB entry 9d4s: Structure of G2L4 RT in complex with 15 nucleotide snapback substrate
Classification: DNA BINDING PROTEIN
Source organism: Gammaproteobacteria; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2024-08-12
Authors: Guo, M., Zhang, Y.
PDB entry 9d4t: Structure of HKU5-20s spike glycoprotein
Classification: VIRAL PROTEIN
Source organism: Pipistrellus bat coronavirus HKU5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-08-12
Authors: Wu, Z., Fan, C., Bjorkman, P.J.
PDB entry 9d4u: Core particle assembly intermediate Capless 13S purified from Saccharomyces cerevisiae
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-08-13
Authors: Chen, X., Kaur, M., Roelofs, J., Walters, K.J.
PDB entry 9d4v: Structure of PAK1 in complex with compound 7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-08-13
Authors: Dementiev, A., Boone, C.D., Suto, R.K., Olland, A.M.
PDB entry 9d4w: Structure of PAK1 in complex with compound 12
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.218 Å
Deposited: 2024-08-13
Authors: Dementiev, A., Suto, R.K., Olland, A.M.
PDB entry 9d4x: Structure of PAK1 in complex with compound 16
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.847 Å
Deposited: 2024-08-13
Authors: Dementiev, A., Suto, R.K., Olland, A.M.
PDB entry 9d4y: Structure of PAK1 in complex with compound 31
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.847 Å
Deposited: 2024-08-13
Authors: Fontano, E., Suto, R.K., Olland, A.M.
PDB entry 9d4z: CryoEM structure of PAR1 with endogenous tethered ligand
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-08-13
Authors: Lyu, X., Lyu, Z., McGrath, A.P., Kang, Y.
PDB entry 9d50: Structure of PAK1 in complex with compound 24
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.898 Å
Deposited: 2024-08-13
Authors: Fontano, E., Suto, R.K., Olland, A.M.
PDB entry 9d51: Structure of PAK2 in complex with compound 12
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-08-13
Authors: Cakici, O., Suto, R.K., Olland, A.M.
PDB entry 9d52: Structure of PAK4 in complex with compound 18
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.449 Å
Deposited: 2024-08-13
Authors: Boone, C., Suto, R., Olland, A.
PDB entry 9d53: PAK4 in complex with compound 7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.468 Å
Deposited: 2024-08-13
Authors: Boone, C.D., Olland, A.M., Suto, R.K.
PDB entry 9d54: Crystal structure of KPC-2 complexed with compound 12
Classification: HYDROLASE/INHIBITOR
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-08-13
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9d55: Apo ACE full dimer 2 prepared by chameleon
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2024-08-13
Authors: Mancl, J.M., Tang, W.J.
PDB entry 9d56: Human kidney Dipeptidyl peptidase 4 with N-ter TM
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-08-13
Authors: Zhang, Z., Lyu, M.
PDB entry 9d57: iGABASnFR2 fluorescent GABA sensor in complex with GABA
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-13
Authors: Zhang, Y., Looger, L.L.
PDB entry 9d58: Human Dystrophin tandem calponin homology actin-binding domain crystallized in a closed-state conformation
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-08-13
Authors: Streeter, O., Shi, K., Ervasti, J.M., Evans III, R.L., Muretta, J.M.
PDB entry 9d59: Structure of Citrobacter multi-ubiquitin protein filament
Classification: PROTEIN BINDING
Source organism: Citrobacter sp. RHBSTW-00271
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å
Deposited: 2024-08-13
Authors: Gong, M., Gu, Y., Corbett, K.D.
PDB entry 9d5a: Structure of Citrobacter multi-ubiquitin protein, local refinement of one full-length protomer
Classification: PROTEIN BINDING
Source organism: Citrobacter sp. RHBSTW-00271
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2024-08-13
Authors: Gong, M., Gu, Y., Corbett, K.D.
PDB entry 9d5b: Structure of Methylobacterium brachiatum multi-ubiquitin protein filament
Classification: PROTEIN BINDING
Source organism: Methylobacterium brachiatum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-08-13
Authors: Gong, M., Gu, Y., Corbett, K.D.
PDB entry 9d5c: Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2024-08-13
Authors: Balana, J.A., Nguyen, A.B., Sawaya, M., Murzin, A.G., Saelices, L., Pratt, R.M.
PDB entry 9d5d: Crystal Structure of Blood Coagulation Factor VIII C2 Domain Mutant L2251A/L2252A
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2024-08-13
Authors: Avery, N.G., Childers, K.C., Spiegel, P.C.
PDB entry 9d5e: Crystal structure of the ILK/alpha-parvin core complex bound to gefitinib
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-13
Authors: Fukuda, K., Qin, J.
PDB entry 9d5f: Crystal structure of the ILK/alpha-parvin core complex bound to bosutinib
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-13
Authors: Fukuda, K., Qin, J.
PDB entry 9d5g: Crystal structure of the ILK/alpha-parvin core complex bound to 4-methyl erlotinib
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-08-13
Authors: Fukuda, K., Qin, J.
PDB entry 9d5h: Crystal structure of the ILK mutant (R371Q)/alpha-parvin core complex bound to gefitinib
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-13
Authors: Fukuda, K., Qin, J.
PDB entry 9d5i: Crystal structure of the ILK mutant (R225A)/alpha-parvin core complex bound to MgATP
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-13
Authors: Fukuda, K., Qin, J.
PDB entry 9d5j: Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing deoxyinosine at the -1 position of the guide strand
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-08-13
Authors: Fisher, A.J., Cheng, J., Manjunath, A., Campbell, K.
PDB entry 9d5k: Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing an expanded cytidine analog at the -1 position of the guide strand
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.697 Å
Deposited: 2024-08-13
Authors: Fisher, A.J., Cheng, J., Manjunath, A., Campbell, K.
PDB entry 9d5l: The C-terminal domain of Thiopseudomonas alkaliphila Tn7 TnsE bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Thiopseudomonas alkaliphila; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-08-13
Authors: Krishnan, S.S., Guarne, A.
PDB entry 9d5m: Apo ACE full dimer 1 prepared by chameleon
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2024-08-13
Authors: Mancl, J.M., Tang, W.J.
PDB entry 9d5n: 48-nm doublet microtubule from Trichomonas vaginalis strain G3
Classification: STRUCTURAL PROTEIN
Source organism: Trichomonas vaginalis G3
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2024-08-13
Authors: Stevens, A., Zhou, H.Z., Kashyap, S., Crofut, E.J.
PDB entry 9d5o: Crystal structure of the second bromodomain of human BRD2 in complex with 3IND
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2024-08-14
Authors: Nithianantham, S., Fischer, M.
PDB entry 9d5p: Crystal structure of the ILK/alpha-parvin core complex bound to erlotinib
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-08-14
Authors: Fukuda, K., Qin, J.
PDB entry 9d5q: Crystal structure of KPC-2 complexed with compound 21
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-08-14
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9d5r: Crystal structure of KPC-2 complexed with compound 22
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-08-14
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9d5s: Apo ACE full dimer 3 prepared by chameleon
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-08-14
Authors: Mancl, J.M., Tang, W.J.
PDB entry 9d5t: Crystal structure of Cu(II)-bound polysaccharide deacetylase from Bacteroides ovatus
Classification: HYDROLASE
Source organism: Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2024-08-14
Authors: Yost, O.G., McLaughlin, K.J.
PDB entry 9d5u: Nitrile hydratase S112A mutant
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-08-14
Authors: Miller, C.G., Holz, R.C., Liu, D.
PDB entry 9d5v: Nitrile hydratase S112D mutant
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2024-08-14
Authors: Miller, C.G., Liu, D., Holz, R.C.
PDB entry 9d5w: Crystal Structure of the Substrate Binding Domain Protein of the ABC Transporter PBP2_YxeM from Vibrio cholerae
Classification: TRANSPORT PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-08-14
Authors: Kim, Y., Maltseva, N., Grimshaw, S., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9d5x: Structure of G2L4 RT Apoenzyme
Classification: DNA BINDING PROTEIN
Source organism: Gammaproteobacteria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-08-14
Authors: Guo, M., Stamos, J.L., Zhang, Y.
PDB entry 9d5y: Nitrile hydratase S112T mutant
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-08-14
Authors: Miller, C.G., Holz, R.C., Liu, D.
PDB entry 9d5z: Crystal structure of the human WDR5 in complex with LH168 compound
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-08-14
Authors: Kimani, S., Dong, A., Hoffmann, L., Nemec, V., Ackloo, S., Muller-Knapp, S., Knapp, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9d60: Crystal structure of Zn(II)-bound polysaccharide deacetylase from Bacteroides ovatus
Classification: HYDROLASE
Source organism: Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-08-14
Authors: Adamek, O.E., McLaughlin, K.J.
PDB entry 9d61: Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic , no scFv16
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-08-14
Authors: Gati, C., Motiwala, Z., Tyson, A.S., Styrpejko, D., Han, G.W., Khan, S., Ramos-Gonzalez, N., Shenvi, R., Majumdar, S.
PDB entry 9d62: Crystal structure of Human Galectin-3 CRD in complex with Lactose (native)
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-08-14
Authors: dos Santos, L.V., Dias, I.P., Mazepa, E., Minella, T.F., Baruffi, M.R., Mestriner, L., Nascimento, A.F.Z., Albuquerque, L.J.C., Mischiatti, K.L., Winnischofer, S.M.B., Amaral, S.S., Silveira, J.L.M., Picheth, G.F.
PDB entry 9d63: Crystal structure of Human Galectin-3 CRD in complex with Galactose (Galactose soak)
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.15 Å
Deposited: 2024-08-14
Authors: dos Santos, L.V., Dias, I.P., Mazepa, E., Minella, T.F., Baruffi, M.R., Mestriner, L., Nascimento, A.F.Z., Albuquerque, L.J.C., Mischiatti, K.L., Winnischofer, S.M.B., Amaral, S.S., Silveira, J.L.M., Picheth, G.F.
PDB entry 9d64: Crystal structure of Human Galectin-3 CRD in complex with Galacturonic acid (Galacturonic acid soak)
Classification: SUGAR BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-08-14
Authors: dos Santos, L.V., Dias, I.P., Mazepa, E., Minella, T.F., Baruffi, M.R., Mestriner, L., Nascimento, A.F.Z., Albuquerque, L.J.C., Mischiatti, K.L., Winnischofer, S.M.B., Amaral, S.S., Silveira, J.L.M., Picheth, G.F.
PDB entry 9d65: Nitrile hydratase BR52A mutant
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-08-14
Authors: Miller, C.G., Holz, R.C., Liu, D., Kaley, N.
PDB entry 9d66: Human excitatory amino acid transporter 3 (EAAT3) with bound L-Aspartate in an intermediate outward facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-08-14
Authors: Qiu, B., Boudker, O.
PDB entry 9d67: Human excitatory amino acid transporter 3 (EAAT3) with bound D-Aspartate in an intermediate outward facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-08-14
Authors: Qiu, B., Boudker, O.
PDB entry 9d68: Human excitatory amino acid transporter 3 (EAAT3) with bound L-Cysteine in an outward facing state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-08-14
Authors: Qiu, B., Boudker, O.
PDB entry 9d69: Human excitatory amino acid transporter 3 (EAAT3) with bound L-Cysteine in an intermediate outward facing state (slight upper position)
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-08-14
Authors: Qiu, B., Boudker, O.
PDB entry 9d6a: Human excitatory amino acid transporter 3 (EAAT3) with bound L-Cysteine in an intermediate outward facing state
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-08-14
Authors: Qiu, B., Boudker, O.
PDB entry 9d6b: Crystal structure of SARS-CoV-2 NSP3 macrodmain in complex with AVI-607
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2024-08-14
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9d6c: Gag CA-SP1 immature lattice bound with Lenacapavir and Bevirimat from enveloped virus like particles
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2024-08-14
Authors: Wu, C., Meuser, M.E., Xiong, Y.
PDB entry 9d6d: Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Deposited: 2024-08-14
Authors: Wu, C., Meuser, M.E., Xiong, Y.
PDB entry 9d6e: Gag CA-SP1 immature lattice bound with Bevirimat from enveloped virus like particles
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-08-14
Authors: Wu, C., Meuser, M.E., Xiong, Y.
PDB entry 9d6f: Cryo-EM structure of E. coli FimH lectin domain bound to Fabs 440-2 and 454-3
Classification: CELL ADHESION,SUGAR BINDING PROTEIN
Source organism: Escherichia coli; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.24 Å
Deposited: 2024-08-15
Authors: Lees, J.A., Han, S.
PDB entry 9d6g: Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-3716
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2024-08-15
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9d6h: Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-1504
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.02 Å
Deposited: 2024-08-15
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9d6i: Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-4317
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2024-08-15
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9d6j: Nitrile hydratase BR52K mutant
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-08-15
Authors: Miller, C.G., Holz, R.C., Liu, D., Kaley, N.
PDB entry 9d6k: Nitrile hydratase BR157A mutant
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2024-08-15
Authors: Miller, C.G., Holz, R.C., Liu, D., Kaley, N.
PDB entry 9d6l: Human Sec61 complex inhibited by KZR-261
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-08-15
Authors: Park, E., Wang, L.
PDB entry 9d6m: Nitrile hydratase BR157K mutant
Classification: LYASE
Source organism: Pseudonocardia thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2024-08-15
Authors: Miller, C.G., Holz, R.C., Liu, D., Kaley, N.
PDB entry 9d6n: Loop-Deleted DNA Polymerase Theta in Complex with a dsDNA Overhang and an Allostertic Inhibitor
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2024-08-15
Authors: Fried, W., Chen, X.S.
PDB entry 9d6o: Loop-Deleted DNA Polymerase Theta Polymerase Domain in Complex with a dsDNA Overhang and an Allosteric Inhibitor
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.31 Å
Deposited: 2024-08-15
Authors: Fried, W., Chen, X.S.
PDB entry 9d6p: Human p38alpha MAP Kinase in complex with (Naphthalen-1-yl)pyridazine derivative GDK767-7
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-08-15
Authors: Brunzelle, J.S., Shuvalova, L., Knez, D., Meden, A., Roy, S.R., Watterson, D.M., Gobec, S.
PDB entry 9d6q: [F:Au+:F-pH5] Gold base pair with 2-thiothymidine homopair at pH 5.0
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.77 Å
Deposited: 2024-08-15
Authors: Vecchioni, S., Imstepf, L., Woloszyn, K., Lu, B., Sha, R., Ohayon, Y.P.
PDB entry 9d6r: [F:Au+:F-pH6] Gold base pair with 2-thiothymidine homopair at pH 6.0
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.92 Å
Deposited: 2024-08-15
Authors: Vecchioni, S., Imstepf, L., Woloszyn, K., Sha, R., Lu, B., Ohayon, Y.P.
PDB entry 9d6s: [F:Au+:F-pH9.5] Gold base pair with 2-thiothymidine homopair at pH 9.5
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.87 Å
Deposited: 2024-08-15
Authors: Vecchioni, S., Imstepf, L., Woloszyn, K., Lu, B., Sha, R., Ohayon, Y.P.
PDB entry 9d6t: [F:Au+:F-pH10] Gold base pair with 2-thiothymidine homopair at pH 10.0
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.82 Å
Deposited: 2024-08-15
Authors: Vecchioni, S., Imstepf, L., Woloszyn, K., Lu, B., Sha, R., Ohayon, Y.P.
PDB entry 9d6u: [F:Au+:F-pH11] Gold base pair with 2-thiothymidine homopair at pH 11.0
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.21 Å
Deposited: 2024-08-15
Authors: Vecchioni, S., Imstepf, L., Lu, B., Woloszyn, K., Sha, R., Ohayon, Y.P.
PDB entry 9d6v: [F:Au+/Ag+:F-pH8] Heterobimetallic base pair with Ag+ and Au+ between a 2-thio-dT homopair, crystallized in the presence of Ag+, Au+ and Cu+
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.87 Å
Deposited: 2024-08-15
Authors: Vecchioni, S., Imstepf, L., Lu, B., Woloszyn, K., Sha, R., Ohayon, Y.P.
PDB entry 9d6w: Crystal structure of Apo Human Prostaglandin reductase 1 (PTGR1) (Monoclinic P form)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-08-16
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9d6x: Crystal structure of Human Prostaglandin reductase 1 (PTGR1) in complex with methotrexate (Monoclinic P form)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-08-16
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9d6y: Crystal structure of Apo Human Prostaglandin reductase 1 (PTGR1) (Orthorhombic C form)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-08-16
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9d6z: Crystal structure of Human Prostaglandin reductase 1 (PTGR1) in complex with methotrexate (Orthorhombic C form)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-08-16
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9d70: Cryo-EM of helical fibers formed by two peptides Pyn-K6 and Pyn-(EY)3
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-16
Authors: Zia, A., Qiao, Y., Xu, B., Wang, F.
PDB entry 9d71: Crystal structure of Human Prostaglandin reductase 1 (PTGR1) in complex with methotrexate (P1 form)
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-16
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9d72: CryoEM structure of anti-MHC-I Fab M1/42 complex with H2-Dd
Classification: ANTITUMOR PROTEIN/Immune System
Source organism: Mus musculus; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2024-08-16
Authors: Jiang, J., Natarajan, K., Margulies, D.H., Lei, H., Huang, R.
PDB entry 9d73: CryoEM structure of anti-MHC-I mAb B1.23.2 complex with HLA-B44:05
Classification: ANTITUMOR PROTEIN/Immune System
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-08-16
Authors: Jiang, J., Natarajan, K., Lei, H., Huang, R., Margulies, D.H.
PDB entry 9d74: CryoEM structure of anti-MHC-I Fab B1.23.2 complex with HLA-B44:05
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2024-08-16
Authors: Jiang, J., Natarajan, K., Margulies, D.H., Lei, H., Huang, R.
PDB entry 9d75: Human p38alpha MAP Kinase in complex with 1-(Cyclohexylmethyl)-1H-indazole derivative; OSF346
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-08-16
Authors: Brunzelle, J.S., Shuvalova, L., Benetik, S.F., Roy, S.M., Watterson, D.M., Gobec, S.
PDB entry 9d77: Crystal form of Netrin-1 mimics nanotubes
Classification: SIGNALING PROTEIN,APOPTOSIS
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2024-08-16
Authors: Meier, M., Krahn, N.J., McDougall, M.D., Rafiei, F., Koch, M., Stetefeld, J.
PDB entry 9d78: Apo-OXA-58 carbapenemase
Classification: HYDROLASE/INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-08-16
Authors: Maggiolo, A.O., Smith, C.A., Toth, M., Vakulenko, S.B.
PDB entry 9d79: OXA-58-NA-1-157 1.5 min complex
Classification: HYDROLASE/INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-08-16
Authors: Smith, C.A., Maggiolo, A.O., Toth, M., Vakulenko, S.B.
PDB entry 9d7a: OXA-58-NA-1-157 5 min complex
Classification: HYDROLASE/INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-08-16
Authors: Smith, C.A., Maggiolo, A.O., Toth, M., Vakulenko, S.B.
PDB entry 9d7b: OXA-58-NA-1-157 7.5 min complex
Classification: HYDROLASE/INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-08-16
Authors: Smith, C.A., Maggiolo, A.O., Toth, M., Vakulenko, S.B.
PDB entry 9d7c: OXA-58-NA-1-157 10 min complex
Classification: HYDROLASE/INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-08-16
Authors: Smith, C.A., Maggiolo, A.O., Toth, M., Vakulenko, S.B.
PDB entry 9d7d: OXA-58-NA-1-157 20 min complex
Classification: HYDROLASE/INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-08-16
Authors: Smith, C.A., Maggiolo, A.O., Toth, M., Vakulenko, S.B.
PDB entry 9d7g: BG505 DS-SOSIP.664 apo structure from the CH103 KN cryo-EM dataset
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-08-16
Authors: Parsons, R.J., Acharya, P.
PDB entry 9d7h: Cryo-EM structure of BG505 DS-SOSIP.664 with 1 CH103 KN Fab bound
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2024-08-16
Authors: Parsons, R.J., Acharya, P.
PDB entry 9d7i: Cryo-EM structure of BG505 DS-SOSIP.664 with 2 CH103 KN Fabs bound
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-08-16
Authors: Parsons, R.J., Acharya, P.
PDB entry 9d7j: Clostridium acetobutylicum alcohol dehydrogenase bound to NADP+
Classification: OXIDOREDUCTASE
Source organism: Clostridium acetobutylicum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2024-08-16
Authors: Madzelan, P., Wilson, M.A.
PDB entry 9d7k: Infectious B19V capsid
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-16
Authors: Lee, H., Hafenstein, S.
PDB entry 9d7l: Minimal PutA proline dehydrogenase domain (design #2) covalently inactivated by (S)-but-3-yn-2-ylglycine
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2024-08-16
Authors: Tanner, J.J., Meeks, K.R., Ji, J.
PDB entry 9d7n: Human p38alpha MAP Kinase in complex with 1-Isobutyl-1H-indazole derivative; OSF267
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.973 Å
Deposited: 2024-08-16
Authors: Brunzelle, J.S., Shuvalova, L., Benetik, S.F., Roy, S.M., Watterson, D.M., Gobec, S.
PDB entry 9d7o: Cryo-EM structure of BG505 DS-SOSIP.664 with 1 CH103 Fab bound
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2024-08-16
Authors: Parsons, R.J., Acharya, P.
PDB entry 9d7p: Cryo-EM structure of BG505 DS-SOSIP.664 with 2 CH103 Fabs bound
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-08-16
Authors: Parsons, R.J., Acharya, P.
PDB entry 9d7q: Water and chloride as allosteric inhibitors in WNK kinase osmosensing
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.301 Å
Deposited: 2024-08-16
Authors: Akella, R., Goldsmith, E.J.
PDB entry 9d7r: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-08-17
Authors: Aleksandrova, E.V., Huang, W., Baliga, C., Atkinson, G.C., Vazquez-Laslop, N., Mankin, A.S., Polikanov, Y.S.
PDB entry 9d7s: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2024-08-17
Authors: Aleksandrova, E.V., Huang, W., Baliga, C., Atkinson, G.C., Vazquez-Laslop, N., Mankin, A.S., Polikanov, Y.S.
PDB entry 9d7t: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-08-17
Authors: Aleksandrova, E.V., Huang, W., Baliga, C., Atkinson, G.C., Vazquez-Laslop, N., Mankin, A.S., Polikanov, Y.S.
PDB entry 9d7u: The low pH structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-08-17
Authors: Lu, M., Liu, B.
PDB entry 9d7v: The spd-bound structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-17
Authors: Lu, M., Liu, B.
PDB entry 9d7w: The TBZ-bound structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-17
Authors: Lu, M., Liu, B.
PDB entry 9d7x: The spm-bound structure
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-08-17
Authors: Lu, M., Liu, B.
PDB entry 9d7y: Crystal structure of scFv corresponding to human autoantibody b96.11
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-08-18
Authors: Buckle, A.M., McGowan, S.
PDB entry 9d7z: Shigella flexneri bacteriophage Moo19 Icosahedral Reconstruction
Classification: VIRUS
Source organism: Shigella virus Moo19
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-08-18
Authors: Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
PDB entry 9d80: Shigella flexneri bacteriophage Moo19 Tail
Classification: VIRUS
Source organism: Shigella virus Moo19
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-08-18
Authors: Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
PDB entry 9d81: Shigella flexneri bacteriophage Moo19 Gp82
Classification: VIRAL PROTEIN
Source organism: Shigella virus Moo19
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-08-18
Authors: Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
PDB entry 9d82: Shigella flexneri bacteriophage B2 Icosahedral Reconstruction
Classification: VIRUS
Source organism: Shigella phage B2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-18
Authors: Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
PDB entry 9d83: Shigella flexneri bacteriophage B2 tail
Classification: VIRUS
Source organism: Shigella phage B2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-08-18
Authors: Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
PDB entry 9d84: Shigella flexneri bacteriophage B2 Gp48 and Gp49
Classification: VIRAL PROTEIN
Source organism: Shigella phage B2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-08-18
Authors: Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
PDB entry 9d85: Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1) bound to tRNA in a distorted tRNA conformation
Classification: RNA BINDING PROTEIN/RNA
Source organism: Methanocaldococcus jannaschii; Pyrococcus furiosus DSM 3638
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.59 Å
Deposited: 2024-08-18
Authors: Ona Chuquimarca, S.M., Beenstock, J., Daou, S., Keszei, A.F.A., Yin, Z., Sicheri, F.
PDB entry 9d86: Crystal structure of epoxyqueuosine reductase QueH C9S mutant from Thermotoga maritima
Classification: METAL BINDING PROTEIN
Source organism: Thermotoga maritima MSB8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-08-18
Authors: Hu, Y., Bruner, S.D.
PDB entry 9d87: FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, unbound dimer crystal form 8
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-08-18
Authors: Fellner, M.
PDB entry 9d88: Gag CA-SP1 immature lattice from enveloped and perforated virus like particles
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2024-08-19
Authors: Wu, C., Meuser, M.E., Xiong, Y.
PDB entry 9d89: E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Classification: RIBOSOME
Source organism: Beatragus hunteri; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.95 Å
Deposited: 2024-08-19
Authors: Pichkur, E.B., Panteleev, P.V., Konevega, A.L.
PDB entry 9d8a: Structure of Rhizopus azygosporus Kinase in complex with GDP and MG
Classification: TRANSFERASE
Source organism: Rhizopus azygosporus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-08-19
Authors: Wimberly-Gard, G.M., Shuman, S.
PDB entry 9d8b: High-resolution crystal structure of Vibrio cholerae NFeoB in the GDP-bound form
Classification: TRANSPORT PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-08-19
Authors: Lee, M., Magante, K.D., Smith, A.T.
PDB entry 9d8c: OXA-58-NA-1-157 2.5 hour complex
Classification: HYDROLASE/INHIBITOR
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2024-08-19
Authors: Smith, C.A., Maggiolo, A.O., Toth, M., Vakulenko, S.B.
PDB entry 9d8d: Crystal structure of Vibrio cholerae NFeoB in the GMPPCP-bound form
Classification: TRANSPORT PROTEIN
Source organism: Vibrio cholerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-08-19
Authors: Lee, M., Magante, K.D., Smith, A.T.
PDB entry 9d8e: Crystal structure of the ACVR1 (ALK2) Kinase Domain in complex with inhibitor CDD-2789
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-08-19
Authors: Ta, H.M., Kim, C., Jimmidi, K., Matzuk, M.M.
PDB entry 9d8f: Crystal structure of the ACVR1 (ALK2) Kinase Domain in complex with inhibitor CDD-2281
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2024-08-19
Authors: Ta, H.M., Kim, C., Jimmidi, R., Matzuk, M.M.
PDB entry 9d8g: Human p38alpha MAP Kinase in complex with (Naphthalen-2-yl)pyridazine derivative; KES29
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-08-19
Authors: Brunzelle, J.S., Shuvalova, L., Knez, D., Meden, A., Roy, S.M., Watterson, D.M., Gobec, S.
PDB entry 9d8h: JN.1 SARS-COV-2 Spike 3-down conformation
Classification: VIRUS
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-08-19
Authors: Windsor, I.W., Wu, H.
PDB entry 9d8i: JN.1 SARS-COV-2 Spike 1-up conformation
Classification: VIRUS
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-19
Authors: Windsor, I.W., Wu, H.
PDB entry 9d8j: KP.2 SARS-COV-2 Spike 3-down conformation
Classification: VIRUS
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-19
Authors: Windsor, I.W., Wu, H.
PDB entry 9d8k: KP.2 SARS-COV-2 Spike 1-up conformation
Classification: VIRUS
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-08-19
Authors: Windsor, I.W., Wu, H.
PDB entry 9d8l: KP.2 SARS-COV-2 Spike 2-up conformation
Classification: VIRUS
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-08-19
Authors: Windsor, I.W., Wu, H.
PDB entry 9d8m: Q108K:K40L:T51V:T53C:R58W:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V fluorophore in the dark state at pH 4
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.201 Å
Deposited: 2024-08-19
Authors: Ehyaei, N., Bingham, C., Geiger, J.H.
PDB entry 9d8n: Q108K:K40L:T51V:T53C:R58W:Y19W:Q38L:Q4A:T29L mutant of hCRBPII bound to FR1V and irradiated with UV light at pH 4
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.301 Å
Deposited: 2024-08-19
Authors: Bingham, C., Ehyaei, N., Geiger, J.H.
PDB entry 9d8o: Q108K:K40L:T51V:T53C:R58Y:Y19W:Q38L:Q4A:T29L mutant of hCRBPII in complex with FR1V in the dark state at pH 3.0
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-08-19
Authors: Bingham, C., Geiger, J.H.
PDB entry 9d8p: Focused map of Cryo-EM structure of Ubiquitin C-degron bound to KLHDC10-EloB/C
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-08-19
Authors: Chittori, S., Scott, D.C., Schulman, B.A.
PDB entry 9d8q: Crystal structure of Estrogen Receptor alpha from Melanotaenia fluviatilis bound to estradiol and human SRC2 peptide
Classification: NUCLEAR PROTEIN
Source organism: Melanotaenia fluviatilis; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.751 Å
Deposited: 2024-08-20
Authors: McDougal, D.P., Pederick, J.L., Bruning, J.B.
PDB entry 9d8s: Crystal Structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum (AMP/Mg bound)
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-08-20
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9d8t: Crystal structure of KPC-2 complexed with compound 16
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-08-20
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9d8u: Crystal structure of CDK6 in complex with atirmociclib
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-08-20
Authors: Johnson, E., Chen, P., Ferre, R.A., Deihl, W., Yu, X., He, Y.-A.
PDB entry 9d8v: Cryo-EM structure of the BG505 SOSIPv2
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-20
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 9d8w: Cryo-EM structure of Human Enterovirus D94 A-particle
Classification: VIRUS
Source organism: enterovirus D94
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-08-20
Authors: Fu, J., Klose, T., Rossmann, M.R., Kuhn, R., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 9d8x: Cryo-EM structure of Human Enterovirus D94 empty particle
Classification: VIRUS
Source organism: enterovirus D94
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-08-20
Authors: Fu, J., Klose, T., Rossmann, M.R., Kuhn, R., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 9d8y: Cryo-EM structure of HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-VRC34.01 Fab with one gp120 rotated, Population 4
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.06 Å
Deposited: 2024-08-20
Authors: Thakur, B., Acharya, P.
PDB entry 9d8z: Crystal structure of the ACVR1 (ALK2) Kinase Domain in complex with inhibitor CDD-2282
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-08-20
Authors: Ta, H.M., Kim, C., Jimmidi, R., Matzuk, M.M.
PDB entry 9d90: Cryo-EM structure of partially open HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-17b Fab and 3-VRC34.01 Fab, Population 1
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2024-08-20
Authors: Thakur, B., Acharya, P.
PDB entry 9d91: Crystal structure of L-asparaginase from Streptococcus pneumoniae TIGR4
Classification: HYDROLASE
Source organism: Streptococcus pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2024-08-20
Authors: Gade, P., Endres, M., Babnigg, G., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9d92: Structure of Z4 c3i
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2024-08-20
Authors: Bera, A.K., Pyles, H., Saragovi, A., Baker, D.
PDB entry 9d93: Mycobacteriophage Bxb1 tail tip - Composite map and model
Classification: VIRAL PROTEIN
Source organism: Mycobacterium phage Bxb1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2024-08-20
Authors: Freeman, K.G.
PDB entry 9d94: Mycobacteriophage Bxb1 portal and connector assembly - Composite map and model
Classification: VIRAL PROTEIN
Source organism: Mycobacterium phage Bxb1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-08-20
Authors: Freeman, K.G.
PDB entry 9d95: TRAV35/TRBV20 TCR - HLA-B38 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; human gammaherpesvirus 4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-08-21
Authors: Zhu, S., Petersen, J., Rossjohn, J.