LiteFold/PDB huggingface dataset:
PDB entry 9dji: T4 Lysozyme R119H/Q123H
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djj: T4 Lysozyme R119H/Q123H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djk: T4 Lysozyme D127H/V131H
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djl: T4 Lysozyme D127H/V131H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djm: T4 Lysozyme K147H/T151H
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.08 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djn: T4 Lysozyme K147H/T151H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djo: T4 Lysozyme E5H/I9H/A73H/G77H
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djp: T4 Lysozyme A73H/G77H/R119H/Q123H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.17 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djq: T4 Lysozyme T109H/G113H/D127H/V131H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2024-09-06
Authors: Chen, E.Y., Besaw, J.E., Ernst, O.P.
PDB entry 9djr: T4 Lysozyme T115H/R119H/K147H/T151H co-crystallized with Cu(II)-NTA
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djs: T4 Lysozyme A73H/G77H/T115H/R119H co-crystallized with Cu(II)-NTA (room temperature structure)
Classification: HYDROLASE
Source organism: Tequatrovirus T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-09-06
Authors: Besaw, J.E., Ernst, O.P.
PDB entry 9djt: Ternary complex structure of Cereblon-DDB1 bound to WIZ(ZF7) and the molecular glue WIZ-5
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2024-09-06
Authors: Partridge, J.R., Ma, X., Ornelas, E.
PDB entry 9dju: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-09-06
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9djv: apo aplysia Slo1 R199Q
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-06
Authors: Gustavo, G.F., Shen, R., Latorre, R., Perozo, E.
PDB entry 9djw: X-ray crystal structure of TNFa-VNAR D1 complex
Classification: TOXIN
Source organism: Homo sapiens; Squalus acanthias
Experimental method: X-RAY DIFFRACTION
Resolution: 3.43 Å
Deposited: 2024-09-06
Authors: Ubah, O.C., Shi, K., Aihara, H., Barelle, C.J., LeBeau, A.M.
PDB entry 9djx: Ternary complex structure of Cereblon-DDB1 bound to WIZ(ZF7) and the molecular glue WIZ-6
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2024-09-07
Authors: Partridge, J.R., Ma, X., Ornelas, E.
PDB entry 9djy: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-09-07
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9djz: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-09-07
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dk0: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-09-07
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dk1: Lexapeptide dehydratase complex LxmKY apo
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces rochei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-09-07
Authors: Randall, G.T., Bashiri, G.
PDB entry 9dk2: Lexapeptide dehydratase complex LxmKY, ATP bound
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces rochei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-09-07
Authors: Randall, G.T., Bashiri, G.
PDB entry 9dk3: Lexapeptide dehydratase complex LxmKY, hydrolysed ATP bound
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces rochei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-09-07
Authors: Randall, G.T., Bashiri, G.
PDB entry 9dk4: ancestral hydroxynitrile lyase with fifteen substitutions
Classification: LYASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-09-07
Authors: Sarak, S.C., Tan, P., Evans III, R.L., Shi, K., Kazlauskas, R.J., Aihara, H., Pierce, C.T., Walsh, M.E., Greenberg, L.R.
PDB entry 9dk5: Cryo-EM structure of human Nav1.6 in complex with PaurTx3
Classification: TRANSPORT PROTEIN/TOXIN
Source organism: Homo sapiens; Paraphysa scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-08
Authors: Fan, X., Huang, J., Yan, N.
PDB entry 9dk8: TRIF TIR Filament Cryo-EM Structure
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-09-08
Authors: Manik, M.K., Xiao, L., Wu, H.
PDB entry 9dk9: Structure of URAT1 with no external ligand added
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-09-08
Authors: Suo, Y., Fedor, J.G., Lee, S.-Y.
PDB entry 9dka: Structure of URAT1 in complex with benzbromarone
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-09-08
Authors: Suo, Y., Fedor, J.G., Lee, S.-Y.
PDB entry 9dkb: Structure of URAT1 in complex with lesinurad
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2024-09-08
Authors: Suo, Y., Fedor, J.G., Lee, S.-Y.
PDB entry 9dkc: Structure of URAT1 in complex with TD-3
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2024-09-08
Authors: Suo, Y., Fedor, J.G., Lee, S.-Y.
PDB entry 9dkd: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-09-08
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dke: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-09-08
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dkf: Ca2+ bound aplysia Slo1 R202Q
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-09-08
Authors: Gustavo, G.F., Shen, R., Latorre, R., Perozo, E.
PDB entry 9dkg: NMR structures of small molecules bound to a model of an RNA CAG repeat expansion.
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-09-08
Authors: Chen, J.L., Taghavi, A., Disney, M.D., Fountain, M.A., Childs-Disney, J.L.
PDB entry 9dkh: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-09-08
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dki: Crystal structure of the TIR domain C117H mutant from human TRAM
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-09-09
Authors: Pan, M., Gu, W., Nanson, J.D., Kobe, B.
PDB entry 9dkj: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-09-09
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dkk: Designed miniproteins potently inhibit and protect against MERS-CoV. MERS-CoV S in complex with miniprotein cb3_GGGSGGGS_SB175, linker 7 (Local refinement of two RBDs and 2 miniproteins)
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-09-09
Authors: Tortorici, M.A., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9dkl: Ca2+ bound aplysia Slo1 F304A
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-09
Authors: Gustavo, G.F., Shen, R., Latorre, R., Perozo, E.
PDB entry 9dkm: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-09
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dkn: Apo aplysia Slo1 R202Q
Classification: MEMBRANE PROTEIN
Source organism: Aplysia californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-09-09
Authors: Gustavo, G.F., Shen, R., Latorre, R., Perozo, E.
PDB entry 9dko: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM1010 (6-cyclopropyl-2,4-dimethyl-3-(4-(trifluoromethyl)benzyl)-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one)
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-09-09
Authors: Deng, X., Tomchick, D., Phillips, M.
PDB entry 9dkp: The structure of human vacuolar protein sorting 34 catalytic domain bound to RD-I-53
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2024-09-09
Authors: Abiodun, W.O., Tsubaki, E., Dass, R., Singleton, J.D., Samarawickrama, P., Doukov, T., Peterson, M.A., Moody, J.D.
PDB entry 9dkq: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM1153 (4,6-dicyclopropyl-3-(3-fluoro-4-(trifluoromethyl)benzyl)-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-d]pyridazin-7-one)
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2024-09-09
Authors: Deng, X., Tomchick, D., Phillips, M.
PDB entry 9dkr: Crystal structure of CcbD complexed with PCP domain of CcbZ
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces caelestis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-09-09
Authors: Heberlig, G.W., Podust, L.M., Burkart, M.D.
PDB entry 9dks: Crystal structure of CcbD C19S mutant complexed with single PCP domain of CcbZ
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces caelestis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-09-09
Authors: Heberlig, G.W., Podust, L.M., Burkart, M.D.
PDB entry 9dku: NanH sialidase from C. perfringens in complex with Sialyl LacNAc
Classification: HYDROLASE
Source organism: Clostridium perfringens ATCC 13124
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2024-09-10
Authors: Medley, B.J., Boraston, A.B.
PDB entry 9dkv: Human mitochondrial ClpP in Apo state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2024-09-10
Authors: Uday, A.B., Zeytuni, N., Goncalves, M., Vahidi, S.
PDB entry 9dkw: Human mitochondrial ClpP in complex with Bortezomib
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2024-09-10
Authors: Uday, A.B., Zeytuni, N., Goncalves, M., Vahidi, S.
PDB entry 9dkx: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-09-10
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dky: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM1174 (3-((7-azaspiro[3.5]nonan-7-yl)methyl)-4-cyclopropyl-6-ethyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one)
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-09-10
Authors: Deng, X., Tomchick, D., Phillips, M.
PDB entry 9dkz: In situ microED structure of the Eosinophil major basic protein-1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.2 Å
Deposited: 2024-09-10
Authors: Yang, J.E., Bingman, C.A., Mitchell, J., Mosher, D., Wright, E.R.
PDB entry 9dl0: Crystal structure of a synthetic Fab (R3H8) in complex with the FRB domain of mTOR
Classification: IMMUNE SYSTEM/Transferase
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-09-10
Authors: O'Leary, K.M., Slezak, T., Kossiakoff, A.A.
PDB entry 9dl1: Crystal Structure of HLA-A*02:01/NY-ESO-1 (SLLMWITQV) and a target specific TRACeR-I
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-09-10
Authors: Mallik, L., Du, H., Huang, P., Sgourakis, N.G.
PDB entry 9dl2: Structure of proline utilization A complexed with 2,3-dihydro-1,4-benzodioxine-5-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-09-10
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9dl3: Structure of proline utilization A complexed with quinoline-2-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-09-10
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9dl4: Structure of proline utilization A complexed with 2-pyridinethiol
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-09-10
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9dl5: Structure of proline utilization A complexed with 5-chloro-1-indanone
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-09-10
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9dl6: Structure of proline utilization A complexed with piperidine-3-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2024-09-10
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9dl7: Structure of proline utilization A complexed with 1-(4-fluorophenyl)thiourea
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2024-09-10
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9dl8: Structure of proline utilization A soaked with 4-methoxybenzyl alcohol
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2024-09-10
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9dl9: Structure of proline utilization A co-crystallized with 4-methoxybenzyl alcohol
Classification: OXIDOREDUCTASE
Source organism: Sinorhizobium meliloti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-09-10
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 9dla: Streptococcus pneumoniae GAPN with NADP+
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2024-09-10
Authors: Eunjeong, L., Elan, Z.E.
PDB entry 9dlb: Streptococcus pneumoniae apo GAPN
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2024-09-10
Authors: Eunjeong, L., Elan, Z.E.
PDB entry 9dlc: Streptococcus pneumoniae GAPN with G3P
Classification: OXIDOREDUCTASE
Source organism: Streptococcus pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2024-09-10
Authors: Eunjeong, L., Elan, Z.E.
PDB entry 9dld: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-09-10
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dle: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-10
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dlf: Arabinosyltransferase AftB in complex with Fab_B3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mycolicibacterium chubuense
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2024-09-10
Authors: Liu, Y., Mancia, F.
PDB entry 9dlg: CryoEM structure of the TIR domain from human TRAM
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.6 Å
Deposited: 2024-09-11
Authors: Hedger, A., Pospich, S., Pan, M., Gu, W., Ve, T., Raunser, S., Landsberg, M., Nanson, J.D., Kobe, B.
PDB entry 9dlh: donor substrate analog-bound AftB
Classification: MEMBRANE PROTEIN
Source organism: Mycolicibacterium chubuense
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-11
Authors: Yaqi, L.
PDB entry 9dli: PKD2 ion channel, R638C variant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-09-11
Authors: Esarte Palomero, O., DeCaen, P.G.
PDB entry 9dlk: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM1398 ((S)-3-(amino(3-chloro-4-(trifluoromethyl)phenyl)(cyclopropyl)methyl)-6-cyclopropyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-d]pyridazin-7-one)
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-09-11
Authors: Deng, X., Tomchick, D., Phillips, M.
PDB entry 9dll: NMR structures of small molecules bound to a model of an RNA CAG repeat expansion.
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-09-11
Authors: Chen, J.L., Taghavi, A., Disney, M.D., Fountain, M.A., Childs-Disney, J.L.
PDB entry 9dlm: NMR structures of small molecules bound to a model of an RNA CAG repeat expansion.
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2024-09-11
Authors: Chen, J.L., Taghavi, A., Disney, M.D., Fountain, M.A., Childs-Disney, J.L.
PDB entry 9dlo: Crystal structure of the monomeric form of CanA
Classification: CELL ADHESION
Source organism: Pyrodictium abyssi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-09-11
Authors: Rudolph, M.J., Conticello, V.P.
PDB entry 9dlp: Cryo-EM structure of human TREX-2 complex bound to DDX39B(UAP56)
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2024-09-11
Authors: Clarke, B.P., Xie, Y., Ren, Y.
PDB entry 9dlr: Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to the N-terminal motif of DDX39B(UAP56)
Classification: RNA BINDING PROTEIN/Hydrolase
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-09-11
Authors: Clarke, B.P., Xie, Y., Ren, Y.
PDB entry 9dls: Vibrio cholerae DnaB
Classification: DNA BINDING PROTEIN/DNA
Source organism: Vibrio cholerae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-09-11
Authors: Mazzoletti, D., Peng, A., Gao, N., Olinares, P.D.B., Morrone, C., Garavaglia, A., Mendoza, A., Chowdhury, A., Gouda, N., Tsoy, S., Bhavsar, H., Cerullo, A., Rossi, F., Rizzi, M., Chait, B.T., Miggiano, R., Jeruzalmi, D.
PDB entry 9dlt: STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE 5 FROM GLYCINE MAX CULTIVAR ESSEX COMPLEXED WITH PLP-GLYCINE
Classification: TRANSFERASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-11
Authors: Beamer, L.J., Owuocha, L.F.
PDB entry 9dlu: Solution structure of Staphylococcus aureus response regulator ArlR DNA-binding domain
Classification: DNA BINDING PROTEIN
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
Experimental method: SOLUTION NMR
Deposited: 2024-09-11
Authors: Rafid Feisal, M., Hwang, P.
PDB entry 9dlv: Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to DDX39B(UAP56)
Classification: RNA BINDING PROTEIN/Hydrolase
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2024-09-11
Authors: Clarke, B.P., Xie, Y., Ren, Y.
PDB entry 9dlw: Crystal structure of the ternary complex of DCAF1 and WDR5 with PROTAC, OICR-41114
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2024-09-11
Authors: Mabanglo, M.F., Mamai, A., Wilson, B.J., Hoffer, L., Al-awar, R., Vedadi, M.
PDB entry 9dlx: Bovine Arp2/3 complex with N-WASP CA bound to Arp3 and Arp2-ArpC1
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-09-11
Authors: Saks, A.J., Barrie, K.R., Dominguez, R.
PDB entry 9dly: Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM1211 ((R)-3-(amino(6-(trifluoromethyl)pyridin-3-yl)methyl)-4-cyclopropyl-6-ethyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one)
Classification: OXIDOREDUCTASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-09-11
Authors: Deng, X., Tomchick, D., Phillips, M.
PDB entry 9dlz: Bovine Arp2/3 complex with N-WASP CA bound to Arp3
Classification: STRUCTURAL PROTEIN
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-09-11
Authors: Saks, A.J., Barrie, K.R., Dominguez, R.
PDB entry 9dm0: Cryo-EM structure of the SFV009 3G01 Fab in complex with A/California/04/2009
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/California/04/2009(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-11
Authors: Fernandez Quintero, M.L., Ferguson, J.A., Han, J., Ward, A.B.
PDB entry 9dm1: Mycobacterial supercomplex malate:quinone oxidoreductase assembly
Classification: MEMBRANE PROTEIN
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-09-11
Authors: Di Trani, J.M., Rubinstein, J.L.
PDB entry 9dm3: De novo design of proteins that bind naphthalenediimides, powerful photooxidants with tunable photophysical properties
Classification: DE NOVO PROTEIN
Source organism: Helicana
Experimental method: SOLUTION NMR
Deposited: 2024-09-12
Authors: Wu, Y., Mann, S.I., DeGrado, W.F.
PDB entry 9dm5: Product-Bound mannosyltransferase PimE
Classification: MEMBRANE PROTEIN
Source organism: Mycobacteroides abscessus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-09-12
Authors: Liu, Y.
PDB entry 9dm6: Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with an ethylhydrazide inhibitor
Classification: HYDROLASE
Source organism: Danio rerio
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-09-12
Authors: Gaynes, M.N., Watson, P.R., Konig, B., Christianson, D.W.
PDB entry 9dm7: mannosyltransferase PimE in complex with Fab_E6
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mycobacteroides abscessus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-09-12
Authors: Liu, Y.
PDB entry 9dm8: EGFR wildtype in complex with BI-8128
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-09-12
Authors: Heppner, D.E., Damghani, T., Lin, K.S.
PDB entry 9dm9: HIV-RT pre-catalytic complex with MK-8527
Classification: TRANSFERASE/DNA
Source organism: HIV-1 M:B_HXB2R; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.73 Å
Deposited: 2024-09-12
Authors: Hayes, R.P., Tummala, S.
PDB entry 9dma: Crystal structure of cobalt-bound human ADO C18S/C239S variant in complex with hydralazine at 1.89 Angstrom resolution
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-09-12
Authors: Liu, A., Li, J.
PDB entry 9dmb: Rhesus RHA10.01 Fab in complex with HIV-1 Env BG505 DS-SOSIP trimer
Classification: IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.27 Å
Deposited: 2024-09-12
Authors: Gorman, J., Kwong, P.D.
PDB entry 9dmc: Human PARP1 ART domain bound to NAD+ analog benzamide adenine dinucleotide and ADP-ribose
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-09-13
Authors: Langelier, M.F., Pascal, J.M.
PDB entry 9dmd: YscN Yersinia ATPase delta 1-92, R359A
Classification: HYDROLASE
Source organism: Yersinia pestis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-09-13
Authors: Ellis, P.K., Barker, S.A., Dickenson, N.E., Johnson, S.J.
PDB entry 9dme: Type 3 KD-mxyl filament of miniature tau macrocycle derived from 4R tauopathic fold
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-09-13
Authors: Xu, X., Angera, J.I., Rajewski, H.B., Jiang, W., Del Valle, R.J.
PDB entry 9dmf: Crystal structure of LJF-0085 Fab, a non-human primate antibody targets HIV-1 envelope protein
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-09-13
Authors: Lin, X., Wilson, I.A.
PDB entry 9dmg: Human muscle nAChR apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.05 Å
Deposited: 2024-09-13
Authors: Li, H., Hibbs, R.E.
PDB entry 9dmh: Human muscle nAChR ACh-bound state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.06 Å
Deposited: 2024-09-13
Authors: Li, H., Hibbs, R.E.
PDB entry 9dmi: Structure of the C-terminal half of LRRK2 bound to RN277 (Type-II inhibitor)
Classification: PROTEIN BINDING
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2024-09-13
Authors: Sanz-Murillo, M., Leschziner, A.
PDB entry 9dmj: Human muscle nAChR with two fab1b-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2024-09-13
Authors: Li, H., Hibbs, R.E.
PDB entry 9dmk: Human muscle nAChR with one fab1b-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2024-09-13
Authors: Li, H., Hibbs, R.E.
PDB entry 9dml: Human muscle nAChR with fab2-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2024-09-13
Authors: Li, H., Hibbs, R.E.
PDB entry 9dmm: Crystal structure of human KRAS G12C covalently bound to Divarasib (GDC6036)
Classification: ONCOPROTEIN,HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-13
Authors: Fernando, M.C.
PDB entry 9dmq: Human muscle nAChR with fab3-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.06 Å
Deposited: 2024-09-14
Authors: Li, H., Hibbs, R.E.
PDB entry 9dmr: Solution NMR structure of the calcium insensitive human LETM1 F-EF-hand domain mutant in the absence of calcium
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-09-14
Authors: Lin, Q.T., Stathopulos, P.B.
PDB entry 9dms: Human muscle nAChR with fab6-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.92 Å
Deposited: 2024-09-14
Authors: Li, H., Hibbs, R.E.
PDB entry 9dmt: Human muscle nAChR with fab7-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Deposited: 2024-09-14
Authors: Li, H., Hibbs, R.E.
PDB entry 9dmu: Cryo-EM structure of IMPDH2 bound to IMP and GAD
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.82 Å
Deposited: 2024-09-14
Authors: Chen, Y.J., Li, B., Parada, L.F.
PDB entry 9dmv: Human muscle nAChR with fab9-bound
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Deposited: 2024-09-14
Authors: Li, H., Hibbs, R.E.
PDB entry 9dmw: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-09-16
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dmx: Crystal structure of shark UrIg2 V-C1-C2-C3 domains
Classification: IMMUNE SYSTEM
Source organism: Ginglymostoma cirratum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2024-09-16
Authors: Stanfield, R.L., Wilson, I.A.
PDB entry 9dmy: Chronic wasting disease prion fibril
Classification: PROTEIN FIBRIL
Source organism: Odocoileus virginianus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-09-16
Authors: Caughey, B., Hoyt, F., Alam, P., Artikis, E., Soukup, J., Hughson, A., Schwartz, C., Race, B., Barbian, K.
PDB entry 9dmz: Glycosylated chronic wasting disease prion fibril
Classification: PROTEIN FIBRIL
Source organism: Odocoileus virginianus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-09-16
Authors: Caughey, B., Hoyt, F., Alam, P., Artikis, E., Soukup, J., Hughson, A., Schwartz, C., Race, B., Barbian, K.
PDB entry 9dn0: CryoEM structure of the Strongylocentrotus purpuratus caveolin complex
Classification: MEMBRANE PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-09-16
Authors: Connolly, S.M., Ohi, M.D.
PDB entry 9dn1: CryoEM structure of the Salpingoeca rosetta caveolin complex
Classification: MEMBRANE PROTEIN
Source organism: Salpingoeca rosetta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-16
Authors: Connolly, S.M., Ohi, M.D.
PDB entry 9dn2: TJ5-1 Fab in complex with NG2 COBRA hemagglutinin
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-09-16
Authors: Nagashima, K., Mousa, J.
PDB entry 9dn3: Crystal Structure of Human Inositol 1,3,4-Trisphosphate 5/6-kinase (ITPK1) in Complex with an Inhibitor 9-cylcopentyladenine
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-09-16
Authors: Wang, H.
PDB entry 9dn4: Crystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N
Classification: IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-16
Authors: Lovell, S., Cooper, A., Battaile, K.P., Hegde, S., Wang, J.
PDB entry 9dn5: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-09-16
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dn6: Insulin receptor bound with de novo designed agonist called ""RF-405"".
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-09-16
Authors: Bai, X.C.
PDB entry 9dn7: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-09-16
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dn8: RamR variant S2.3 complexed with 1S-1-phenyl-1,2,3,4-tetrahydroisoquinoline
Classification: TRANSCRIPTION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-09-17
Authors: Kim, W., Zhang, Y.J.
PDB entry 9dn9: RamR variant S2.4 complexed with 1S-1-phenyl-1,2,3,4-tetrahydroisoquinoline
Classification: TRANSCRIPTION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-09-17
Authors: Kim, W., Zhang, Y.J.
PDB entry 9dna: CRYSTAL STRUCTURE ANALYSIS OF AN A-DNA FRAGMENT AT 1.8 ANGSTROMS RESOLUTION. D(GCCCGGGC)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 1987-07-10
Authors: Heinemann, U.
PDB entry 9dnb: CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Classification: MOTOR PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-09-17
Authors: Kendrick, A.A., Leschziner, A.E.
PDB entry 9dnc: Apo crystal structure of RamR variant D2.1
Classification: TRANSCRIPTION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-09-17
Authors: Kim, W., Zhang, Y.J.
PDB entry 9dnd: Pseudosymmetric protein nanocage GI4 -F7 (local refinement)
Classification: VIRAL PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-09-17
Authors: Park, Y.J., Dowling, Q.M., Seattle Structural Genomics Center for Infectious Disease (SSGCID), King, N.P., Veesler, D.
PDB entry 9dne: Pseudosymmetric protein nanocage GI9-F7 (local refinement)
Classification: VIRAL PROTEIN
Source organism: synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-09-17
Authors: Park, Y.J., Dowling, Q.M., King, N.P., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9dng: Structure of rat beta-arrestin 1 by fiducial-assisted cryo-EM
Classification: SIGNALING PROTEIN/Immune System
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2024-09-17
Authors: Pakharukova, N., Kahsai, A.W., Masoudi, A., Lefkowitz, R.J.
PDB entry 9dnh: RamR variant D2.3 complexed with 1-phenyl-dihydroisoquinoline
Classification: TRANSCRIPTION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2024-09-17
Authors: Kim, W., Zhang, Y.J.
PDB entry 9dni: Insulin receptor bound with de novo designed agonist called ""S2-F1-S1""
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.2 Å
Deposited: 2024-09-17
Authors: Bai, X.C.
PDB entry 9dnk: RamR variant R2.1 complexed with 1R-1-phenyl-1,2,3,4-tetrahydroisoquinoline
Classification: TRANSCRIPTION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-09-17
Authors: Kim, W., Zhang, Y.J.
PDB entry 9dnl: Apo crystal structure of RamR variant R2.2
Classification: TRANSCRIPTION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 4.01 Å
Deposited: 2024-09-17
Authors: Kim, W., Zhang, Y.J.
PDB entry 9dnm: Structure of rat beta-arrestin 1 bound to allosteric inhibitor
Classification: SIGNALING PROTEIN/Immune System
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-09-17
Authors: Pakharukova, N., Kahsai, A.W., Masoudi, A., Lefkowitz, R.J.
PDB entry 9dnn: Insulin receptor in complex with both insulin and de novo designed site-2 binder ""S2B"".
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2024-09-17
Authors: Bai, X.C.
PDB entry 9dno: Structure of UBR1-RFF complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-09-17
Authors: Huang, S., Wu, J., Taylor, S., Chen, Y.
PDB entry 9dnp: Structure of UBR2-RFF complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2024-09-17
Authors: Huang, S., Wu, J., Taylor, S., Chen, Y.
PDB entry 9dnq: Structure of UBR2-RYF complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2024-09-17
Authors: Huang, S., Wu, J., Taylor, S., Chen, Y.
PDB entry 9dnr: Structure of UBR2-RWF complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2024-09-17
Authors: Huang, S., Wu, J., Taylor, S., Chen, Y.
PDB entry 9dns: Cryo-EM structure of Tom1-UBE2D2-ubiquitin complex
Classification: transferase/ligase
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-09-18
Authors: Warner, K.M., Hunkeler, M., Baek, K., Roy Burman, S.S., Fischer, E.S.
PDB entry 9dnt: Cryo-EM structure of Tom1 (S. cerevisiae)
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-09-18
Authors: Warner, K.M., Hunkeler, M., Baek, K., Roy Burman, S.S., Fischer, E.S.
PDB entry 9dnu: SARS-CoV-2 papain-like protease (PLpro) with inhibitor Jun13296
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-09-18
Authors: Ansari, A., Jadhav, P., Arnold, E., Ruiz, F.X., Wang, J.
PDB entry 9dnv: SARS-CoV-2 papain-like protease (PLpro) with inhibitor Jun13308
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-09-18
Authors: Ansari, A., Jadhav, P., Arnold, E., Ruiz, F.X., Wang, J.
PDB entry 9dnw: Human ClC-3:noTMEM9
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-09-18
Authors: Son, Y., Schrecker, M., Hite, R.K.
PDB entry 9dnx: Human ClC-3:TMEM9, TMEM9 Protomer A and B: Complete
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-09-18
Authors: Son, Y., Schrecker, M., Hite, R.K.
PDB entry 9dny: Human ClC-3:TMEM9, TMEM9 Protomer A: No CD TMEM9, Protomer B: No LD, No CD
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2024-09-18
Authors: Son, Y., Schrecker, M., Hite, R.K.
PDB entry 9dnz: Human ClC-3:TMEM9, TMEM9 Protomer A: Complete, TMEM9 Protomer B: No LD, No CD
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2024-09-18
Authors: Son, Y., Schrecker, M., Hite, R.K.
PDB entry 9do0: Human ClC-3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-09-18
Authors: Schrecker, M., Son, Y., Hite, R.K.
PDB entry 9do1: SARS-CoV-2 papain-like protease (PLpro) with inhibitor Jun13307
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-09-18
Authors: Ansari, A., Jadhav, P., Arnold, E., Ruiz, F.X., Wang, J.
PDB entry 9do2: #1664 Fab in complex with NG2 COBRA hemagglutinin
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2024-09-18
Authors: Nagashima, K., Mousa, J.
PDB entry 9do3: SARS-CoV-2 papain-like protease (PLpro) with inhibitor Jun13317
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-09-18
Authors: Ansari, A., Jadhav, P., Arnold, E., Ruiz, F.X., Wang, J.
PDB entry 9do4: Structure of T4 RNA Ligase 1 bound to ATP and Mg
Classification: LIGASE
Source organism: Enterobacteria phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-09-18
Authors: Wimberly-Gard, G.M., Shuman, S.
PDB entry 9do5: SARS-CoV-2 papain-like protease (PLpro) with inhibitor Jun12665
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-09-18
Authors: Ansari, A., Jadhav, P., Arnold, E., Ruiz, F.X., Wang, J.
PDB entry 9do6: Membrane-spanning OlyA/PlyB pore complex focused refinement
Classification: MEMBRANE PROTEIN
Source organism: Pleurotus ostreatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2024-09-18
Authors: Smothers, J., Chen, Z., Li, Y., Han, Y., Radhakrishnan, A.
PDB entry 9do7: Membrane-spanning OlyA/PlyB pore complex
Classification: MEMBRANE PROTEIN
Source organism: Pleurotus ostreatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2024-09-18
Authors: Smothers, J., Chen, Z., Li, Y., Han, Y., Radhakrishnan, A.
PDB entry 9do8: Membrane-bound OlyA/PlyB (Hairpin-Lock) prepore focused refinement
Classification: MEMBRANE PROTEIN
Source organism: Pleurotus ostreatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-09-18
Authors: Smothers, J., Chen, Z., Li, Y., Han, Y., Radhakrishnan, A.
PDB entry 9do9: Membrane-bound OlyA/PlyB (Hinge-Lock) prepore focused refinement
Classification: MEMBRANE PROTEIN
Source organism: Pleurotus ostreatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2024-09-18
Authors: Smothers, J., Chen, Z., Li, Y., Han, Y., Radhakrishnan, A.
PDB entry 9doa: Membrane-bound OlyA/PlyB (Hinge-Lock) prepore
Classification: MEMBRANE PROTEIN
Source organism: Pleurotus ostreatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-09-18
Authors: Smothers, J., Chen, Z., Li, Y., Han, Y., Radhakrishnan, A.
PDB entry 9dob: Membrane-bound OlyA (E69A)/PlyB (Hinge-Lock) prepore focused refinement
Classification: MEMBRANE PROTEIN
Source organism: Pleurotus ostreatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2024-09-18
Authors: Smothers, J., Chen, Z., Li, Y., Han, Y., Radhakrishnan, A.
PDB entry 9doc: The von Willebrand factor A domain of human capillary morphogenesis gene II, flexibly fused to the 1TEL crystallization chaperone, Thr-Val linker variant, at 1.2 Angstrom resolution
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2024-09-18
Authors: Samarawickrama, P., Probst, R., Ludlow, K., Doukov, T., Moody, J.D.
PDB entry 9dod: Crystal structure of PRMT5:MEP50 in complex with PRT543
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-09-18
Authors: Leal, R.A., Pitis, P.M., Dou, Y., Lin, H., Wang, M., Xu, C.
PDB entry 9doe: The high-resolution crystal structure of WT CYP199A4 bound to 4-methoxybenzoic acid at 100 K
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.265 Å
Deposited: 2024-09-19
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9dof: Octahedral small virus-like particles of dengue virus type 2 (local reconstruction)
Classification: VIRUS LIKE PARTICLE
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.24 Å
Deposited: 2024-09-19
Authors: Johnson, A., Dodes Traian, M., Walsh, R.M., Jenni, S., Harrison, S.C.
PDB entry 9dog: Octahedral small virus-like particles of dengue virus type 2 (octahedral reconstruction)
Classification: VIRUS LIKE PARTICLE
Source organism: dengue virus type 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2024-09-19
Authors: Johnson, A., Dodes Traian, M., Walsh, R.M., Jenni, S., Harrison, S.C.
PDB entry 9doh: Cryo-EM structure of LptB2FG apo-1
Classification: LIPID TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2024-09-19
Authors: Su, C.
PDB entry 9doi: SARS-CoV-2 papain-like protease (PLpro) with inhibitor Jun13306
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-09-19
Authors: Ansari, A., Jadhav, P., Arnold, E., Ruiz, F.X., Wang, J.
PDB entry 9doj: Influenza A virus polymerase PA subunit endonuclease domain bound to inhibitor Compound 19a
Classification: HYDROLASE/INHIBITOR
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-09-19
Authors: Hollenstein, K., Price, I.R., Eddins, M.J., Su, H.P.
PDB entry 9dok: Cryo-EM structure of LptB2FG apo-II
Classification: LIPID TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-09-19
Authors: Su, C.C.
PDB entry 9dol: Potent inhibition of the protein arginine deiminases (PAD1-4) by targeting a Ca2+ dependent allosteric binding site
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-09-19
Authors: Liu, S.