LiteFold/PDB huggingface dataset:
PDB entry 7ebq: The structural analysis of A.Muciniphila sulfatase
Classification: HYDROLASE
Source organism: Akkermansia muciniphila (strain ATCC BAA-835 / Muc)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2021-03-10
Authors: Bao, R., Li, C.C., Tang, X.Y., Zhu, Y.B., Song, Y.J., Zhao, N.L., Huang, Q., Mou, X.Y., Luo, G.H., Liu, T.G.
PDB entry 7ebr: EV-D68 in complex with 2H12 Fab (state S2)
Classification: VIRUS
Source organism: Human enterovirus D68; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-03-10
Authors: Xu, C., Cong, Y.
PDB entry 7ebs: Crystal structure of juvenile hormone acid methyltransferase JHAMT from silkworm
Classification: HORMONE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2021-03-11
Authors: Guo, P.C., Zhang, Y.S., Zhang, L., Xu, H.Y., Xia, Q.Y.
PDB entry 7ebt: Crystal structure of Aedes aegypti Noppera-bo, glutathione S-transferase epsilon 8, in glutathione-bound form
Classification: TRANSFERASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2021-03-11
Authors: Inaba, K., Koiwai, K., Senda, M., Senda, T., Niwa, R.
PDB entry 7ebu: Crystal structure of Aedes aegypti Noppera-bo, glutathione S-transferase epsilon 8, in Daidzein- and glutathione-bound form
Classification: TRANSFERASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-03-11
Authors: Inaba, K., Koiwai, K., Senda, M., Senda, T., Niwa, R.
PDB entry 7ebv: Crystal structure of Aedes aegypti Noppera-bo, glutathione S-transferase epsilon 8, in luteolin- and glutathione-bound form
Classification: TRANSFERASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-03-11
Authors: Inaba, K., Koiwai, K., Senda, M., Senda, T., Niwa, R.
PDB entry 7ebw: Crystal structure of Aedes aegypti Noppera-bo, glutathione S-transferase epsilon 8, in desmethylglycitein and glutathione-bound form
Classification: TRANSFERASE
Source organism: Aedes aegypti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2021-03-11
Authors: Inaba, K., Koiwai, K., Senda, M., Senda, T., Niwa, R.
PDB entry 7ebx: Crystal structure of juvenile hormone acid methyltransferase JHAMT in complex with S-adenosyl-L-homocysteine.
Classification: HORMONE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.89 Å
Deposited: 2021-03-11
Authors: Guo, P.C., Zhang, Y.S., Zhang, L., Xu, H.Y., Xia, Q.Y.
PDB entry 7eby: Crystal structure of D-Succinylase (DSA) from Cupriavidus sp. P4-10-C
Classification: HYDROLASE
Source organism: Cupriavidus sp. P4-10-C
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-11
Authors: Yamasaki, M., Sumida, Y.
PDB entry 7ebz: EV-D68 in complex with 2H12 Fab (state S1)
Classification: VIRUS
Source organism: Human enterovirus D68; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2021-03-11
Authors: Xu, C., Cong, Y.
PDB entry 7ec0: Crystal structure of juvenile hormone acid methyltransferase JHAMT in complex with S-Adenosyl homocysteine and methyl farnesoate
Classification: HORMONE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 2.494 Å
Deposited: 2021-03-11
Authors: Guo, P.C., Zhang, Y.S., Zhang, L., Xu, H.Y., Xia, Q.Y.
PDB entry 7ec1: Crystal structure of SdgB (ligand-free form)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-03-11
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7ec3: Crystal structure of SdgB (complexed with UDP, GlcNAc, and Glycosylated peptide)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain USA300); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-11
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7ec5: EV-D68 in complex with 8F12 Fab
Classification: VIRUS
Source organism: Human enterovirus D68; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2021-03-11
Authors: Xu, C., Cong, Y.
PDB entry 7ec6: Crystal structure of SdgB (complexed with peptides)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus subsp. aureus USA300; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-11
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7ec7: Crystal structure of SdgB (complexed with phosphate ions)
Classification: TRANSFERASE
Source organism: Staphylococcus aureus (strain USA300)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-03-11
Authors: Kim, D.-G., Baek, I., Lee, Y., Kim, H.S.
PDB entry 7ec8: Polyethylene terephthalate hydrolyzing lipase PET2 mutant - F105R-E110K
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2021-03-11
Authors: Nakamura, A.
PDB entry 7ec9: Structure of the Thermotoga maritima Family 5 endo-glucanase in complex with 1-deoxynojiromycin
Classification: HYDROLASE
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2021-03-11
Authors: Manoj, N., Garg, P.
PDB entry 7eca: Crystal structure of the Keap1 complex with a peptide base on ETGE motif.
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.00006 Å
Deposited: 2021-03-11
Authors: Cheng, L., Wang, C.
PDB entry 7ecb: Polyethylene terephthalate hydrolyzing lipase PET2 mutant - R47C-G89C-F105R-E110K-S156P-G180A-T297P
Classification: HYDROLASE
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2021-03-12
Authors: Nakamura, A.
PDB entry 7ecc: M4 family peptidase PlM4P-mature form
Classification: HYDROLASE
Source organism: Pseudoalteromonas lipolytica SCSIO 04301
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-12
Authors: Yang, J.
PDB entry 7ecd: Crystal structure of Tam41 from Firmicutes bacterium, complex with CTP-Mg
Classification: TRANSFERASE
Source organism: Firmicutes bacterium CAG:884
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-12
Authors: Kimura, K., Kawai, F., Kubota-Kawai, H., Watanabe, Y., Tamura, Y.
PDB entry 7ecf: Crystal Structure of d(G4C2)2-Ba in C2221 space group
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-03-12
Authors: Geng, Y., Liu, C., Cai, Q., Luo, Z., Zhu, G.
PDB entry 7ecg: Crystal Structure of d(G4C2)2-Ba in F222 space group
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-03-12
Authors: Geng, Y., Liu, C., Cai, Q., Luo, Z., Zhu, G.
PDB entry 7ech: Crystal Structure of d(G4C2)2-K in F222 space group
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2021-03-12
Authors: Geng, Y., Liu, C., Cai, Q., Luo, Z., Zhu, G.
PDB entry 7ecj: RNA duplex containing C-A base pairs
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-03-12
Authors: Kondo, J., Uchida, Y.
PDB entry 7eck: RNA duplex containing C-Ag-A and U-Ag-A base pairs
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2021-03-12
Authors: Kondo, J., Uchida, Y.
PDB entry 7ecl: RNA duplex containing C-Ag-A and U-Ag-A base pair
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2021-03-12
Authors: Kondo, J., Uchida, Y.
PDB entry 7ecm: RNA duplex containing C-A base pair
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2021-03-12
Authors: Kondo, J., Tsudura, A.
PDB entry 7ecn: RNA duplex containing C-Ag-A base pairs
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2021-03-12
Authors: Kondo, J., Tsudura, A.
PDB entry 7eco: RNA duplex containing U-Ag-U base pairs
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2021-03-12
Authors: Kondo, J., Tsudura, A.
PDB entry 7ecp: RNA duplex containing C-Ag-U
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2021-03-12
Authors: Kondo, J., Tsudura, A.
PDB entry 7ecq: Crystal structure of FAM3A
Classification: CYTOKINE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.381 Å
Deposited: 2021-03-13
Authors: Chang, Z., Shi, C.
PDB entry 7ecr: Crystal Structure of Aspergillus terreus Glutamate Dehydrogenase (AtGDH) Complexed With Succinate and ADP-ribose
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2021-03-13
Authors: Godsora, B.K.J., Prakash, P., Punekar, N.S., Bhaumik, P.
PDB entry 7ecs: Crystal Structure of Aspergillus terreus Glutamate Dehydrogenase (AtGDH) Complexed With Malonate and NADPH
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2021-03-13
Authors: Godsora, B.K.J., Prakash, P., Punekar, N.S., Bhaumik, P.
PDB entry 7ect: Crystal Structure of Aspergillus terreus Glutamate Dehydrogenase (AtGDH) Complexed With Tartrate and NADPH
Classification: OXIDOREDUCTASE
Source organism: Aspergillus terreus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-03-13
Authors: Godsora, B.K.J., Prakash, P., Punekar, N.S., Bhaumik, P.
PDB entry 7ecv: The Csy-AcrIF14 complex
Classification: IMMUNE SYSTEM/RNA
Source organism: Moraxella phage Mcat5; Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2021-03-13
Authors: Zhang, L.X., Feng, Y.
PDB entry 7ecw: The Csy-AcrIF14-dsDNA complex
Classification: IMMUNE SYSTEM/RNA/DNA
Source organism: Moraxella phage Mcat5; Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-03-13
Authors: Zhang, L.X., Feng, Y.
PDB entry 7ecy: EV-D68 in complex with 2H12 Fab (State 3)
Classification: VIRUS
Source organism: Human enterovirus D68; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-03-13
Authors: Xu, C., Cong, Y.
PDB entry 7ed0: Transferase from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-03-15
Authors: Kim, D.-G., Lee, B.-J., Lee, S.J.
PDB entry 7ed1: Transferase from Mycobacterium smegmatis
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-03-15
Authors: Kim, D.-G., Lee, B.-J., Lee, S.J.
PDB entry 7ed2: Transferase from Mycobacterium smegmatis
Classification: TRANSFERASE
Source organism: Mycolicibacterium smegmatis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-03-15
Authors: Kim, D.-G., Lee, B.-J., Lee, S.J.
PDB entry 7ed5: A dual mechanism of action of AT-527 against SARS-CoV-2 polymerase
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2021-03-15
Authors: Shannon, A., Fattorini, V., Sama, B., Selisko, B., Feracci, M., Falcou, C., Gauffre, P., El Kazzi, P., Delpal, A., Decroly, E., Alvarez, K., Eydoux, C., Guillemot, J.-C., Moussa, A., Good, S., Colla, P., Lin, K., Sommadossi, J.-P., Zhu, Y.X., Yan, X.D., Shi, H., Ferron, F., Canard, B.
PDB entry 7ed6: Crystal structure of Thermus thermophilus FakA ATP-binding domain
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9285 Å
Deposited: 2021-03-15
Authors: Nakatani, M., Nakahara, S., Fukui, K., Murakawa, T., Masui, R.
PDB entry 7ed9: Crystal structure of selenomethionine-labeled Thermus thermophilus FakA ATP-binding domain
Classification: BIOSYNTHETIC PROTEIN
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01764 Å
Deposited: 2021-03-15
Authors: Nakatani, M., Nakahara, S., Fukui, K., Murakawa, T., Masui, R.
PDB entry 7eda: Structure of monomeric photosystem II
Classification: PHOTOSYNTHESIS
Source organism: Thermosynechococcus vulcanus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2021-03-15
Authors: Yu, H., Hamaguchi, T., Nakajima, Y., Kato, K., kawakami, K., Akita, F., Yonekura, K., Shen, J.R.
PDB entry 7edb: EcoT38I restriction endonuclease complexed with DNA
Classification: DNA BINDING PROTEIN
Source organism: Escherichia phage P2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2021-03-15
Authors: Kita, K., Mikami, B.
PDB entry 7edc: Crystal structure of mutant tRNA [Gm18] methyltransferase TrmH (E107G) in complex with S-adenosyl-L-methionine from Escherichia coli
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.946 Å
Deposited: 2021-03-15
Authors: Kono, Y., Ito, A., Okamoto, A., Yamagami, R., Hirata, A., Hori, H.
PDB entry 7edd: Crystal structure of a serine protease from Streptococcus pyogenes
Classification: LYASE
Source organism: Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.897 Å
Deposited: 2021-03-15
Authors: Jobichen, C., Sivaraman, J.
PDB entry 7edf: Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 1
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-03-16
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.
PDB entry 7edg: Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-03-16
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.
PDB entry 7edh: Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 3
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-03-16
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.
PDB entry 7edi: Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), two RBD-up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-03-16
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.
PDB entry 7edj: Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-03-16
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.
PDB entry 7edk: NMR solution structure of Bt14.12, a novel A-family conotoxin from Conus betulinus
Classification: NEUROPEPTIDE
Experimental method: SOLUTION NMR
Deposited: 2021-03-16
Authors: Zhang, H., Lin, D., Guo, C.
PDB entry 7edl: Crystal structure of the bacterial ribosomal decoding site in complex with G418 and Hg(II)
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-16
Authors: Kondo, J., Suzuki, C.
PDB entry 7edm: Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2021-03-16
Authors: Kondo, J., Suzuki, C.
PDB entry 7edn: Crystal structure of the eukaryotic decoding site in complex with Ag(I)
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-16
Authors: Kondo, J., Suzuki, C.
PDB entry 7edo: First insight into marsupial MHC I peptide presentation: immune features of lower mammals paralleled with bats
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Trichosurus vulpecula; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-16
Authors: Wang, P.Y., Yue, C., Lu, D., Liu, K.F., Liu, S., Yao, S.J., Chai, Y., Qi, J.X., Lou, Y.L., Sun, Z.Y., Gao, G.F., Liu, W.J.
PDB entry 7edp: Crystal structure of AF10-DOT1L complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-03-16
Authors: Chen, S., Zhou, Z.
PDB entry 7edq: MIF complex to compound7
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.266 Å
Deposited: 2021-03-16
Authors: Fan, C.P., Guo, D.Y., Yang, L.
PDB entry 7edr: The crystal structure of the FERM and C-terminal domain complex of Drosophila Merlin
Classification: PROTEIN BINDING
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.527 Å
Deposited: 2021-03-16
Authors: Zhang, F., Long, J., Zhou, H.
PDB entry 7eds: Human p53 core domain with germline hot spot mutation M133T in complex with the natural PIG3 p53-response element and Arsenic
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2021-03-17
Authors: Xing, Y.F., Lu, M.
PDB entry 7edt: RNA duplex containing CC mispairs
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2021-03-17
Authors: Kondo, J., Tada, Y.
PDB entry 7edu: RNA duplex containing C-Au-C base pair
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-03-17
Authors: Kondo, J., Iwase, E.
PDB entry 7edv: DNA duplex containing C-G-Au-C base triple
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2021-03-17
Authors: Kondo, J., Iwase, E.
PDB entry 7edw: DNA duplex containing T-T base pairs in complex with Au(III)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-17
Authors: Kondo, J., Iwase, E.
PDB entry 7edx: p53-bound TFIID-based core PIC on HDM2 promoter
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2021-03-17
Authors: Chen, X., Qi, Y., Hou, H., Wang, X., Wu, Z., Li, J., Xu, Y.
PDB entry 7edz: Crystal Structure of human PPCS in complex with P-HoPan and AMPPNP
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-03-17
Authors: Sharma, N., Mostert, K.J., Strauss, E., Anand, R.
PDB entry 7ee2: Structural insights into the substrate-binding mechanism of a glycoside hydrolase family 12 beta-1,3-1,4-glucanase from Chaetomium sp.CQ31
Classification: STRUCTURAL PROTEIN
Source organism: Chaetomium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37012 Å
Deposited: 2021-03-17
Authors: Jiang, Z.Q., Ma, J.
PDB entry 7ee3: Crystal structure of PltC
Classification: TOXIN
Source organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2021-03-17
Authors: Liu, X.Y., Chen, Z., Gao, X.
PDB entry 7ee4: Crystal structure of Neu5Ac bound PltC
Classification: TOXIN
Source organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2021-03-17
Authors: Liu, X.Y., Chen, Z., Gao, X.
PDB entry 7ee5: Crystal structure of Neu5Gc bound PltC
Classification: TOXIN
Source organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2021-03-17
Authors: Liu, X.Y., Chen, Z., Gao, X.
PDB entry 7ee6: Crystal structure of PltC toxin
Classification: TOXIN
Source organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2021-03-17
Authors: Liu, X.Y., Chen, Z., Gao, X.
PDB entry 7ee8: The crystal structure of MIF bound to compound D5
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 2021-03-17
Authors: Fan, C.P., Guo, D.Y., Yang, L.
PDB entry 7eea: Cyanophage Pam1 tailspike receptor-binding domain
Classification: VIRAL PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 2.671 Å
Deposited: 2021-03-18
Authors: Zhang, J.T., Jiang, Y.L., Zhou, C.Z.
PDB entry 7eeb: Structure of the CatSpermasome
Classification: PROTEIN TRANSPORT
Source organism: Human cytomegalovirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-03-18
Authors: Wu, J.P., Ke, M.
PDB entry 7eec: Crystal structure of EphA7 mutant G656R
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2021-03-18
Authors: Chakraborty, S., Varma, A.K.
PDB entry 7eed: Crystal structure of EphA7 mutant D751H
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2021-03-18
Authors: Chakraborty, S., Varma, A.K.
PDB entry 7eee: Complex structure of glycoside hydrolase family 12 beta-1,3-1,4-glucanase with gentiobiose
Classification: STRUCTURAL PROTEIN
Source organism: Chaetomium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66079 Å
Deposited: 2021-03-18
Authors: Jiang, Z.Q., Ma, J.W.
PDB entry 7eef: Crystal structure of EphA7 mutant G656E
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-18
Authors: Chakraborty, S., Varma, A.K.
PDB entry 7eeh: Selenomethionine labeled Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TqaL
Classification: OXIDOREDUCTASE
Source organism: Neurospora crassa
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-18
Authors: Bunno, R., Mori, T., Awakawa, T., Abe, I.
PDB entry 7eei: Structure of Rift Valley fever virus RNA-dependent RNA polymerase
Classification: VIRAL PROTEIN
Source organism: Rift valley fever virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-03-18
Authors: Wang, X., Hu, C.X.
PDB entry 7eej: Complex structure of glycoside hydrolase family 12 beta-1,3-1,4-glucanase with cellobiose
Classification: STRUCTURAL PROTEIN
Source organism: Chaetomium sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47798 Å
Deposited: 2021-03-18
Authors: Jiang, Z.Q., Ma, J.W.
PDB entry 7eek: Structure of Human serum albumin-Au compound complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-18
Authors: Yang, F., Zhang, J.Z.
PDB entry 7eel: Cyanophage Pam1 capsid asymmetric unit
Classification: VIRUS
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2021-03-19
Authors: Zhang, J.T., Jiang, Y.L., Zhou, C.Z.
PDB entry 7eem: RNA bulged-G motif
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.593 Å
Deposited: 2021-03-19
Authors: Kondo, J., Sekiguchi, S.
PDB entry 7een: Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-03-19
Authors: Kondo, J., Sekiguchi, S.
PDB entry 7eeo: Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2.701 Å
Deposited: 2021-03-19
Authors: Kondo, J., Sekiguchi, S.
PDB entry 7eep: Cyanophage Pam1 portal-adaptor complex
Classification: VIRUS
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2021-03-19
Authors: Zhang, J.T., Jiang, Y.L., Zhou, C.Z.
PDB entry 7eeq: Cyanophage Pam1 tail machine
Classification: VIRAL PROTEIN
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2021-03-19
Authors: Zhang, J.T., Jiang, Y.L., Zhou, C.Z.
PDB entry 7eer: Crystal structure of Tryptophanyl-tRNA synthetase from Bacillus stearothermophilus in complex with 05E6 and ATP
Classification: LIGASE
Source organism: Geobacillus stearothermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-19
Authors: Lv, G., Fan, S., Feng, X., Zhang, Q., Wu, G., Jin, Y., Yang, Z.
PDB entry 7ees: NMR structure of the lasso peptide rubrivimycin
Classification: TOXIN
Source organism: Rubrivivax albus
Experimental method: SOLUTION NMR
Deposited: 2021-03-19
Authors: Xiu, H., Niu, X., Zhu, S.
PDB entry 7eet: Mannanase KMAN from Klebsiella oxytoca KUB-CW2-3
Classification: HYDROLASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2021-03-19
Authors: Pongsapipatana, N., Charoenwattanasatien, R., Pramanpol, N., Nitisinprasert, S., Keawsompong, S.
PDB entry 7eeu: Human p53 core domain with hot spot mutation R282W in complex with the natural CDKN1A(p21) p53-response element and Arsenic
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-03-19
Authors: Xing, Y.F., Lu, M.
PDB entry 7eev: Structure of UTP cyclohydrolase
Classification: HYDROLASE
Source organism: Rhodococcus wratislaviensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2021-03-19
Authors: Zhang, H., Zhang, Y., Yuchi, Z.
PDB entry 7eew: Crystal structure of the intact MTase from Vibrio vulnificus YJ016 in complex with the DNA-mimicking Ocr protein and the S-adenosyl-L-homocysteine (SAH)
Classification: TRANSFERASE
Source organism: Escherichia phage T7; Vibrio vulnificus (strain YJ016)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.896 Å
Deposited: 2021-03-19
Authors: Seo, P.W., Park, S.Y., Kim, J.S.
PDB entry 7eey: The structure of the N-terminal doamin of the Schizosaccharomyces pombe Tad2 adenosine deaminase
Classification: DNA BINDING PROTEIN
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-19
Authors: Xie, W., Liu, X., Zhou, J.
PDB entry 7eez: crystal structure of maize SHH2 SAWADEE domain
Classification: GENE REGULATION
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 1.902 Å
Deposited: 2021-03-20
Authors: Wang, Y., Du, J.
PDB entry 7ef0: Crystal structure of maize SHH2 SAWADEE domain in complex with an H3K9M peptide
Classification: GENE REGULATION
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-03-20
Authors: Wang, Y., Du, J.
PDB entry 7ef1: crystal structure of maize SHH2 SAWADEE domain in complex with and H3K9me1 peptide
Classification: GENE REGULATION
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-20
Authors: Wang, Y., Du, J.
PDB entry 7ef2: Crystal structure of maize SHH2 SAWADEE domain in complex with an H3K9me3 peptide
Classification: GENE REGULATION
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2021-03-20
Authors: Wang, Y., Du, J.
PDB entry 7ef3: crystal structure of maize SHH2 SAWADEE domain in complex with H3K9me2 peptide
Classification: GENE REGULATION
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-20
Authors: Wang, Y., Du, J.
PDB entry 7ef6: Crystal Structure of Xanthosine monophosphate phosphatase in the unliganded state
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2021-03-21
Authors: Yang, S., Rhee, S.
PDB entry 7ef7: Crystal Structure of Xanthosine monophosphate phosphatase complex with XMP
Classification: HYDROLASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2021-03-21
Authors: Yang, S., Rhee, S.
PDB entry 7ef8: Crystal structure of mouse MUTYH in complex with DNA containing AP site analogue:8-oxoG (Form I)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2021-03-21
Authors: Nakamura, T., Nakabeppu, Y., Yamagata, Y.
PDB entry 7ef9: Crystal structure of mouse MUTYH in complex with DNA containing AP site analogue:8-oxoG (Form II)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-03-21
Authors: Nakamura, T., Nakabeppu, Y., Yamagata, Y.
PDB entry 7efa: Crystal structure of the complex between the C-terminal domain of mouse MUTYH and human PCNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-21
Authors: Nakamura, T., Nakabeppu, Y., Yamagata, Y.
PDB entry 7efc: 1.70 A cryo-EM structure of streptavidin
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.7 Å
Deposited: 2021-03-21
Authors: Hiraizumi, M., Yamashita, K., Nishizawa, T., Kotecha, A., Nureki, O.
PDB entry 7efd: 1.77 A cryo-EM structure of Streptavidin using first 40 frames (corresponding to about 40 e/A^2 total dose)
Classification: CYTOSOLIC PROTEIN
Source organism: Streptomyces avidinii
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.77 Å
Deposited: 2021-03-21
Authors: Hiraizumi, M., Yamashita, K., Nishizawa, T., Kotecha, A., Nureki, O.
PDB entry 7efg: RNA kink-turn motif
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-03-21
Authors: Kondo, J., Nagashima, M.
PDB entry 7efh: RNA kink-turn motif
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-21
Authors: Kondo, J., Nagashima, M.
PDB entry 7efi: RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-03-21
Authors: Kondo, J., Nagashima, M.
PDB entry 7efj: Crystal Structure Analysis of human PIN1
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.992 Å
Deposited: 2021-03-21
Authors: Liu, L., Li, J.
PDB entry 7efl: Crystal structure of the gastric proton pump K791S in (BYK)E2BeF state
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2021-03-22
Authors: Abe, K., Yamamoto, K., Irie, K.
PDB entry 7efm: Crystal structure of the gastric proton pump K791S/E820D/Y340N in (BYK)E2BeF state
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-03-22
Authors: Abe, K., Yamamoto, K., Irie, K.
PDB entry 7efn: Crystal structure of the gastric proton pump K791S/E820D/Y340N/E936V in (BYK)E2BeF state
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-03-22
Authors: Abe, K., Yamamoto, K., Irie, K.
PDB entry 7efo: LptB2FG-LPS from Klebsiella pneumoniae in nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Klebsiella pneumoniae subsp. pneumoniae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2021-03-22
Authors: Luo, Q., Shi, H.
PDB entry 7efp: Structure of SARS-CoV-2 spike receptor-binding domain in complex with high affinity ACE2 mutant (S19W,N330Y)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.698 Å
Deposited: 2021-03-22
Authors: Lu, G.W., Ye, F., Lin, X.
PDB entry 7efq: Crystal structure of hPPARgamma ligand binding domain complexed with rosiglitazone-based fluorescence probe
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-03-23
Authors: Yoshikawa, C., Ishida, H., Ohashi, N., Itoh, T.
PDB entry 7efr: Structure of SARS-CoV-2 spike receptor-binding domain in complex with high affinity ACE2 mutant (T27W,N330Y)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.494 Å
Deposited: 2021-03-23
Authors: Lu, G.W., Ye, F., Lin, X.
PDB entry 7efs: Fructose-bisphosphate aldolase in Artemisia sieversiana pollen
Classification: ALLERGEN
Source organism: Artemisia sieversiana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2021-03-23
Authors: Li, Z., Wei, C., Ji Fu, W., Zhi Qiang, X.
PDB entry 7eft: Crystal structure of cell shape-determining protein MreC
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2021-03-23
Authors: Xu, Q., Xiao, Q.J., Sun, B.
PDB entry 7efv: Crystal structure of octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Classification: PHOTOSYNTHESIS
Source organism: Leptolyngbya sp. O-77
Experimental method: X-RAY DIFFRACTION
Resolution: 2.77 Å
Deposited: 2021-03-23
Authors: Minato, T., Teramoto, T., Hung, N.K., Yamada, K., Ogo, S., Kakuta, Y., Yoon, K.S.
PDB entry 7efw: Crystal structure of hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Classification: PHOTOSYNTHESIS
Source organism: Leptolyngbya sp. O-77
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2021-03-23
Authors: Minato, T., Teramoto, T., Hung, N.K., Yamada, K., Ogo, S., Kakuta, Y., Yoon, K.S.
PDB entry 7efx: Crystal Structure of human PIN1 complexed with covalent inhibitor
Classification: ISOMERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2021-03-23
Authors: Liu, L., Li, J., Zhu, R., Pei, Y.
PDB entry 7efy: Crystal structure of retroviral protease-like domain of Ddi1 from Cryptosporidium hominis
Classification: HYDROLASE
Source organism: Cryptosporidium hominis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2021-03-23
Authors: Biswas, I.B., Killivalavan, A.K., Suguna, K.S.
PDB entry 7efz: Structure of Thermotoga maritima GH5 endoglucanase TM1752 in complex with TRIS
Classification: HYDROLASE
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2021-03-23
Authors: Manoj, N., Garg, P.
PDB entry 7eg0: Cryo-EM structure of anagrelide-induced PDE3A-SLFN12 complex
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2021-03-23
Authors: Liu, N., Chen, J., Wang, X.D., Wang, H.W.
PDB entry 7eg1: Cryo-EM structure of DNMDP-induced PDE3A-SLFN12 complex
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-03-23
Authors: Liu, N., Chen, J., Wang, X.D., Wang, H.W.
PDB entry 7eg2: Crystal structure of the apoAequorin complex with (S)-daCTZ
Classification: OXIDOREDUCTASE
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2021-03-24
Authors: Tomabechi, Y., Shirouzu, M.
PDB entry 7eg3: Crystal structure of the apoAequorin complex with (S)-HM-daCTZ
Classification: OXIDOREDUCTASE
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2021-03-24
Authors: Tomabechi, Y., Shirouzu, M.
PDB entry 7eg4: Cryo-EM structure of nauclefine-induced PDE3A-SLFN12 complex
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-03-24
Authors: Liu, N., Chen, J., Wang, X.D., Wang, H.W.
PDB entry 7eg5: FMN-bound form of YviC from Lactococcus lactis subsp. lactis Il1403
Classification: FLAVOPROTEIN
Source organism: Lactococcus lactis subsp. lactis Il1403
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2021-03-24
Authors: Sugiura, N., Nakanishi, T., Kitamura, M.
PDB entry 7eg6: Snf5 Finger Helix bound to the nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-03-24
Authors: Chen, Z.C., Chen, K.J., He, Z.Y., Ye, Y.P.
PDB entry 7eg7: TFIID-based core PIC on SCP promoter
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å
Deposited: 2021-03-24
Authors: Chen, X., Qi, Y., Hou, H., Wang, X., Wu, Z., Li, J., Xu, Y.
PDB entry 7eg8: TFIID-based core PIC on PUMA promoter
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.4 Å
Deposited: 2021-03-24
Authors: Chen, X., Qi, Y., Hou, H., Wang, X., Wu, Z., Li, J., Xu, Y.
PDB entry 7eg9: TFIID-based intermediate PIC on SCP promoter
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-03-24
Authors: Chen, X., Qi, Y., Wang, X., Wu, Z., Li, J., Xu, Y.
PDB entry 7ega: TFIID-based intermediate PIC on PUMA promoter
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Hou, H., Qi, Y., Wang, X., Li, J., Xu, Y.
PDB entry 7egb: TFIID-based holo PIC on SCP promoter
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Hou, H., Qi, Y., Wang, X., Li, J., Xu, Y.
PDB entry 7egc: p53-bound TFIID-based holo PIC on HDM2 promoter
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Hou, H., Qi, Y., Wang, X., Li, J., Xu, Y.
PDB entry 7egd: SCP promoter-bound TFIID-TFIIA in initial TBP-loading state
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.75 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Li, J., Zhao, D., Xu, Y.
PDB entry 7ege: TFIID in canonical conformation
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Li, J., Zhao, D., Xu, Y.
PDB entry 7egf: TFIID lobe A subcomplex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Li, J., Zhao, D., Xu, Y.
PDB entry 7egg: TFIID lobe B subcomplex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Li, J., Zhao, D., Xu, Y.
PDB entry 7egh: TFIID lobe C subcomplex
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Li, J., Zhao, D., Xu, Y.
PDB entry 7egi: TFIID in rearranged conformation
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.82 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Li, J., Zhao, D., Xu, Y.
PDB entry 7egj: SCP promoter-bound TFIID-TFIIA in post TBP-loading state
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.64 Å
Deposited: 2021-03-24
Authors: Chen, X., Wu, Z., Li, J., Zhao, D., Xu, Y.
PDB entry 7egk: Bicarbonate transporter complex SbtA-SbtB bound to AMP
Classification: TRANSPORT PROTEIN
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-03-24
Authors: Fang, S., Huang, X., Zhang, X., Zhang, P.
PDB entry 7egl: Bicarbonate transporter complex SbtA-SbtB bound to HCO3-
Classification: TRANSPORT PROTEIN
Source organism: Synechocystis sp. (strain PCC 6803 / Kazusa)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2021-03-24
Authors: Fang, S., Huang, X., Zhang, X., Zhang, P.
PDB entry 7egm: The SRM module of SWI/SNF-nucleosome complex
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2021-03-24
Authors: Chen, Z.C., Chen, K.J., He, Z.Y., Ye, Y.P.
PDB entry 7egn: Crystal structure of the P450 BM3 heme domain mutant F87A in complex with N-imidazolyl-hexanoyl-L-phenylalanine and hydroxylamine
Classification: OXIDOREDUCTASE
Source organism: Bacillus megaterium (strain ATCC 14581 / DSM 32 / JCM 2506 / NBRC 15308 / NCIMB 9376 / NCTC 10342 / VKM B-512)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-03-24
Authors: Jiang, Y., Dong, S., Feng, Y., Cong, Z.
PDB entry 7ego: X-ray structure of the human heart fatty acid-binding protein complexed with the fluorescent probe HA527
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.21 Å
Deposited: 2021-03-24
Authors: Takabayashi, M., Yokota, J., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Sugiyama, S.
PDB entry 7egp: The structure of SWI/SNF-nucleosome complex
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2021-03-24
Authors: Chen, Z.C., Chen, K.J., He, Z.Y., Ye, Y.P.
PDB entry 7egq: Co-transcriptional capping machineries in SARS-CoV-2 RTC: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with polymerase reveals mechanisms for capping and proofreading
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2021-03-25
Authors: Yan, L.M., Yang, Y.X., Li, M.Y., Zhang, Y., Zheng, L.T., Ge, J., Huang, Y.C., Liu, Z.Y., Wang, T., Gao, S., Zhang, R., Huang, Y.Y., Guddat, L.W., Gao, Y., Rao, Z.H., Lou, Z.Y.
PDB entry 7egr: Co-crystal structure of Ac-AChBPP in complex with RgIA
Classification: TOXIN
Source organism: Aplysia californica; Conus regius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.503 Å
Deposited: 2021-03-26
Authors: Wang, X.Q., Pan, S., Fan, Y.X., Xue, Y., Zhu, X.P., Luo, S.L.
PDB entry 7egs: The crystal structure of lobe domain of E. coli RNA polymerase complexed with the C-terminal domain of UvrD
Classification: TRANSCRIPTION
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-03-26
Authors: Zheng, F., Shen, L., Li, L., Zhang, Y.
PDB entry 7egt: The crystal structure of the C-terminal domain of T. thermophilus UvrD complexed with the N-terminal domain of UvrB
Classification: TRANSCRIPTION
Source organism: Thermus thermophilus; Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.581 Å
Deposited: 2021-03-26
Authors: Zheng, F., Shen, L., Li, L., Zhang, Y.
PDB entry 7egu: Structure of human NNMT in complex with macrocyclic peptide X
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2021-03-26
Authors: Hayashi, K., Mikamiyama, H., Uehara, S., Yamamoto, S., Cary, D., Nishikawa, J., Ueda, T., Ozasa, H., Mihara, K., Yoshimura, N., Kawai, T., Ono, T., Yamamoto, S., Fumoto, M.
PDB entry 7egv: Acetolactate Synthase from Trichoderma harzianum with inhibitor harzianic acid
Classification: TRANSFERASE
Source organism: Trichoderma harzianum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2021-03-26
Authors: Zang, X., Xie, L., Chen, M., Tang, Y., Zhou, J.
PDB entry 7egy: Recombinant head-to-tail dimeric E2 protein
Classification: VIRAL PROTEIN
Source organism: Hog cholera virus strain 'Chinese vaccine
Experimental method: X-RAY DIFFRACTION
Resolution: 4.201 Å
Deposited: 2021-03-27
Authors: Ru, Q.X.
PDB entry 7eh0: Thermus thermophilus RNA polymerase transcription initiation complex containing a template-strand purine at position TSS-2, UpA RNA primer and CMPcPP
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.808 Å
Deposited: 2021-03-27
Authors: Li, L., Zhang, Y.
PDB entry 7eh1: Thermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPP
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2021-03-27
Authors: Li, L., Zhang, Y.
PDB entry 7eh2: Thermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primer
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.34 Å
Deposited: 2021-03-27
Authors: Li, L., Zhang, Y.
PDB entry 7eh3: Structure of Nanobody Nb23 in solution using NMR spectroscopy
Classification: IMMUNE SYSTEM
Source organism: Lama glama
Experimental method: SOLUTION NMR
Deposited: 2021-03-28
Authors: Percipalle, M., Hunashal, Y., Esposito, G., Fogolari, F.
PDB entry 7eh5: Cryo-EM structure of SARS-CoV-2 S-D614G variant in complex with neutralizing antibodies, RBD-chAb15 and RBD-chAb45
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-03-28
Authors: Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.
PDB entry 7eh7: Cryo-EM structure of the octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Classification: PHOTOSYNTHESIS
Source organism: Leptolyngbya sp. O-77
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Deposited: 2021-03-28
Authors: Minato, T., Teramoto, T., Adachi, N., Hung, N.K., Yamada, K., Kawasaki, M., Akutsu, M., Moriya, T., Senda, T., Ogo, S., Kakuta, Y., Yoon, K.S.
PDB entry 7eh8: Cryo-EM structure of the hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
Classification: PHOTOSYNTHESIS
Source organism: Leptolyngbya sp. O-77
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2021-03-28
Authors: Minato, T., Teramoto, T., Adachi, N., Hung, N.K., Yamada, K., Kawasaki, M., Akutsu, M., Moriya, T., Senda, T., Ogo, S., Kakuta, Y., Yoon, K.S.
PDB entry 7eh9: Crystal structure of the flagellar hook cap fragment from Salmonella enterica serovar Typhimurium
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2021-03-29
Authors: Matsunami, H., Yoon, Y.-H., Imada, K., Namba, K., Samatey, F.A.
PDB entry 7eha: Crystal structure of the flagellar hook cap from Salmonella enterica serovar Typhimurium
Classification: MOTOR PROTEIN
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2021-03-29
Authors: Matsunami, H., Yoon, Y.-H., Imada, K., Namba, K., Samatey, F.A.