LiteFold/PDB huggingface dataset:
PDB entry 9axi: HIV 16055.v8.3 SOSIP Env in Complex with Base and N625 Epitope pAbs from Rabbit 2463
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-06
Authors: Brown, S., Antanasijevic, A., Ward, A.B.
PDB entry 9axj: Cystathionine gamma lyase from Thermobifida fusca in an amino crotonate form
Classification: LYASE
Source organism: Thermobifida fusca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-03-06
Authors: Perkins, L.J., Zmich, A.P., Bingman, C.A., Buller, A.R.
PDB entry 9axk: HIV 16055.v8.3 SOSIP Env in Complex with Base and N611 Epitope pAbs from Rabbit 2463
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-03-06
Authors: Brown, S., Antansijevic, A., Ward, A.B.
PDB entry 9axl: Structure of the semi-extended AlphaIIbBeta3 in complex with R21D10 Fab
Classification: BLOOD CLOTTING/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-06
Authors: Wang, J.L., Walz, T., Coller, B., Wang, L., Li, J.H.
PDB entry 9axm: Crystal structure of ARAF/MEK1 complex with NST-628 and a RAF dimer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-03-06
Authors: Quade, B., Huang, X.
PDB entry 9axn: Crystal Structure of Anti-Fentanyl Antibody HY11-6B2_Mu Fab in Complex with Fentanyl
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-03-06
Authors: Rodarte, J.V., Pancera, M.
PDB entry 9axo: Crystal Structure of Antibody HY11-7E1_Ch2 Fab in Complex with Fentanyl
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-06
Authors: Rodarte, J.V., Pancera, M.
PDB entry 9axp: Crystal Structure of HY11-7E1_Hu3 Fab in Complex with Carfentanil
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-03-06
Authors: Rodarte, J.V., Pancera, M.
PDB entry 9axq: Crystal Structure of HY11-7E1_Hu3 Fab in the Apo Conformation
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-03-06
Authors: Rodarte, J.V., Pancera, M., Hannon, B.
PDB entry 9axr: Crystal Structure of HY18-5B1_Ch Fab in Complex with Fentanyl
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-03-06
Authors: McGovern, M.R., Rodarte, J.V., Pancera, M.
PDB entry 9axs: Crystal Structure of HY18-5B1_Ch Fab in the Apo Conformation
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-03-06
Authors: McGovern, M.R., Rodarte, J.V., Pancera, M.
PDB entry 9axt: Non-translating S. pombe ribosome
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-03-06
Authors: Gluc, M., Gemin, O., Purdy, M., Mattei, S., Jomaa, A.
PDB entry 9axu: Non-translating S. pombe ribosome large subunit
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.94 Å
Deposited: 2024-03-06
Authors: Gluc, M., Gemin, O., Purdy, M., Mattei, S., Jomaa, A.
PDB entry 9axv: Translating S. pombe ribosome
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-03-06
Authors: Gluc, M., Gemin, O., Purdy, M., Mattei, S., Jomaa, A.
PDB entry 9axw: Nanobody NbJRI bound to yeast Pdc1
Classification: IMMUNE SYSTEM
Source organism: Saccharomyces cerevisiae; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2024-03-06
Authors: Carrasco-Lopez, C., Avalos, J.L.
PDB entry 9axx: Crystal structure of BRAF/MEK1 complex with NST-628 and an active RAF dimer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2024-03-06
Authors: Quade, B., Huang, X.
PDB entry 9axy: Crystal structure of BRAF/MEK complex with NST-628 and inactive RAF
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2024-03-06
Authors: Quade, B., Huang, X.
PDB entry 9axz: geranine G-induced 2N4R tau filaments
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-06
Authors: Malyshka, D., Kuret, J.
PDB entry 9ay0: Cryo-EM structure of GSSG-bound Ycf1
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-03-07
Authors: Soong, T.H., Hotze, C., Raghav, D., Khandelwal, N.K., Tomasiak, T.M.
PDB entry 9ay1: Cryo-EM structure of SINV/EEEV in complex with a potently neutralizing human antibody IgG EEEV-373
Classification: VIRUS
Source organism: Eastern equine encephalitis virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-03-07
Authors: Bandyopadhyay, A., Klose, T., Kuhn, R.J.
PDB entry 9ay2: Inner tail tube of P1 bacteriophage
Classification: VIRAL PROTEIN
Source organism: Escherichia phage P1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-03-07
Authors: Nakamura, T., Sen, A., Terashi, G., Kihara, D.
PDB entry 9ay3: Tail sheath of P1 bacteriophage
Classification: VIRAL PROTEIN
Source organism: Escherichia phage P1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2024-03-07
Authors: Nakamura, T., Sen, A., Terashi, G., Kihara, D.
PDB entry 9ay4: Compressed tail sheath of P1 bacteriophage
Classification: VIRAL PROTEIN
Source organism: Escherichia phage P1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-03-07
Authors: Nakamura, T., Sen, A., Terashi, G., Kihara, D.
PDB entry 9ay5: Tail-Baseplate of P1 bacteriophage
Classification: VIRAL PROTEIN
Source organism: Escherichia phage P1
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2024-03-07
Authors: Nakamura, T., Sen, A., Terashi, G., Kihara, D.
PDB entry 9ay6: HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5 pAb from Rh.33203
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-03-07
Authors: Brown, S., Antansijevic, A., Ward, A.B.
PDB entry 9ay7: Crystal structure of CRAF/MEK1 complex with NST-628 and inactive RAF
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-03-07
Authors: Quade, B., Huang, X.
PDB entry 9ay8: Structure of the A type blood alpha-D-galactosamine galactosaminidase from Flavonifractor plautii
Classification: SUGAR BINDING PROTEIN
Source organism: Flavonifractor plautii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-07
Authors: Worrall, L.J., Strynadka, N.C.J.
PDB entry 9ay9: Co-crystal structure of human PRMT9 in complex with MRK-990 inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2024-03-07
Authors: Zeng, H., Dong, A., Li, Y., Hutchinson, A., Seitova, A., Li, Y., Gao, Y.D., Schneider, S., Siliphaivanh, P., Sloman, D., Nicholson, B., Fischer, C., Hicks, J., Brown, P.J., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9aya: Crystal structure of CRAF/MEK complex with NST-628 and active RAF dimer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-03-07
Authors: Quade, B., Huang, X.
PDB entry 9ayb: Structure of Apo Sialin S61A mutant
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-03-07
Authors: Schmiege, P., Li, X.
PDB entry 9ayc: Tetra-phosphorylated, E1435Q Ycf1 mutant in inward-facing wide conformation
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-03-07
Authors: Carvalho, R.S.A., Rasel, M.S.I., Khandelwal, N.K., Tomasiak, T.M.
PDB entry 9ayd: Mitochondrial fission 1 (Fis1) protein structure Y38E mutation 1.53A
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2024-03-07
Authors: Mathews, I.I., Pokhrel, S., Wakatsuki, S.
PDB entry 9aye: FIS1 T34D Covalent inhibitor complex
Classification: UNKNOWN FUNCTION/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-03-07
Authors: Mathews, I.I., Pokhrel, S., Wakatsuki, S.
PDB entry 9ayf: Structure of human calcium-sensing receptor in complex with Gi1 (miniGi1) protein in detergent
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-03-07
Authors: Zuo, H., Park, J., Frangaj, A., Ye, J., Lu, G., Manning, J.J., Asher, W.B., Lu, Z., Hu, G., Wang, L., Mendez, J., Eng, E., Zhang, Z., Lin, X., Grasucci, R., Hendrickson, W.A., Clarke, O.B., Javitch, J.A., Conigrave, A.D., Fan, Q.R.
PDB entry 9ayg: Cryo-EM structure of apo state human Cav3.2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-07
Authors: Fan, X., Huang, J., Yan, N.
PDB entry 9ayh: Cryo-EM structure of human Cav3.2 with TTA-A2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-07
Authors: Fan, X., Huang, J., Yan, N.
PDB entry 9ayi: Human malic enzyme 2 cofactor complex at 1.89 Angstrom.
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-03-07
Authors: Krinkel, B.A., Squire, C.J., Loomes, K.M.
PDB entry 9ayj: Cryo-EM structure of human Cav3.2 with TTA-P2
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-07
Authors: Fan, X., Huang, J., Yan, N.
PDB entry 9ayk: Cryo-EM structure of human Cav3.2 with ML218
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-08
Authors: Fan, X., Huang, J., Yan, N.
PDB entry 9ayl: Cryo-EM structure of human Cav3.2 with ACT-709478
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-03-08
Authors: Fan, X., Huang, J., Yan, N.
PDB entry 9aym: Cryo-EM Structure of E.coli produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-acetone-CoA bisubstrate probe
Classification: RNA BINDING PROTEIN
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2024-03-08
Authors: Zhou, M., Marmorstein, R.
PDB entry 9ayn: Mycolicibacterium smegmatis ClpS with bound Ni2+
Classification: PROTEIN BINDING
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2024-03-08
Authors: Presloid, C.J., Jiang, J., Beardslee, P.C., Anderson, H.R., Swayne, T.M., Schmitz, K.R.
PDB entry 9ayo: Mycolicibacterium smegmatis ClpS with bound PheAla and Ni2+
Classification: PROTEIN BINDING
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-03-08
Authors: Presloid, C.J., Jiang, J., Beardslee, P.C., Anderson, H.R., Swayne, T.M., Schmitz, K.R.
PDB entry 9ayp: Mycolicibacterium smegmatis ClpS with bound Co2+
Classification: PROTEIN BINDING
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-03-08
Authors: Presloid, C.J., Jiang, J., Beardslee, P.C., Anderson, H.R., Swayne, T.M., Schmitz, K.R.
PDB entry 9ayq: SMARCA2 in complex with a pyridine-2-one-based inhibitor
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-03-08
Authors: Farrow, N.A., Cocozaki, A.
PDB entry 9ayr: Structure of a Ric1-Rgp1-Rab6 activation intermediate
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-08
Authors: Feathers, J.R., Fromme, J.C.
PDB entry 9ays: HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5, gp120-Interface, and Anti-Immune Complex pAbs from Rh.33203
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2024-03-08
Authors: Brown, S., Antansijevic, A., Ward, A.B.
PDB entry 9ayt: Structure of the quorum quenching lactonase GcL bound to N-hexanoyl-L-homoserine lactone
Classification: HYDROLASE
Source organism: Parageobacillus caldoxylosilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-08
Authors: Corbella, M., Bravo, J.A., Demkiv, A.O., Calixto, A.R., Sompiyachoke, K., Bergonzi, C., Kamerlin, S.C.L., Elias, M.
PDB entry 9ayu: Structure of the A type blood alpha-D-galactosamine galactosaminidase D463A mutant from Flavonifractor plautii
Classification: SUGAR BINDING PROTEIN
Source organism: Flavonifractor plautii
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-08
Authors: Worrall, L.J., Strynadka, N.C.J.
PDB entry 9ayv: HIV CH505/BG505 SOSIP.v8.1 Env in Complex with V1/V3 Epitope and Anti-Immune Complex pAbs from Rabbit 2474
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-03-08
Authors: Brown, S., Antanasijevic, A., Ward, A.B.
PDB entry 9ayw: SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5.1)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-08
Authors: Zhang, Q.E., Acharya, P.
PDB entry 9ayx: SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5.1)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-08
Authors: Zhang, Q.E., Acharya, P.
PDB entry 9ayy: SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5.1)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-08
Authors: Zhang, Q.E., Acharya, P.
PDB entry 9ayz: T-state HbG Makassar hemoglobin
Classification: OXYGEN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2024-03-09
Authors: Feliciano, P.R., Lee, S.J.
PDB entry 9az0: Crystal crystal of FC2591 peroxidase from Frankia casuarinae
Classification: OXIDOREDUCTASE
Source organism: Frankia casuarinae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-03-09
Authors: Stogios, P.J., Skarina, T., Choolaei, Z., Yakunin, A., Savchenko, A.
PDB entry 9az1: Crystal structure of PR9465 peroxidase from Pseudomonas rhizosphaerae
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas rhizosphaerae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-03-09
Authors: Stogios, P.J., Skarina, T., Choolaei, Z., Yakunin, A., Savchenko, A.
PDB entry 9az2: Crystal structure of PF3257 peroxidase from Pseudomonas fluorescens
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2024-03-09
Authors: Stogios, P.J., Skarina, T., Choolaei, Z., Yakunin, A., Savchenko, A.
PDB entry 9az3: Cryo-EM reveals molecular mechanisms underlying the inhibitory effect of netrin-4 on laminin matrix formation
Classification: STRUCTURAL PROTEIN/INHIBITOR
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-03-09
Authors: Kulczyk, A.W.
PDB entry 9az4: INF2 at the Barbed End of F-Actin
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2024-03-10
Authors: Palmer, N.J., Barrie, K.R., Dominguez, R.
PDB entry 9az5: Mycolicibacterium smegmatis ClpS with bound Mg2+
Classification: PROTEIN BINDING
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2024-03-10
Authors: Presloid, C.J., Jiang, J., Beardslee, P.C., Anderson, H.R., Swayne, T.M., Schmitz, K.R.
PDB entry 9az6: F-actin-Talin(R13-DD) complex
Classification: CELL ADHESION
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-03-10
Authors: Biertumpfel, C., Yamada, Y., Mizuno, N.
PDB entry 9az7: Chloride Sites in Photoactive Yellow Protein
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-10
Authors: Dyda, F., Schotte, F., Anfinrud, P., Cho, H.S.
PDB entry 9az8: Kynurenine monooxygenase from Pseudomonas fluorescens complexed with 4-cyclohexylphenylacetyltetrazole
Classification: FLAVOPROTEIN/INHIBITOR
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-03-10
Authors: Phillips, R.S., Ma, W.
PDB entry 9az9: Chloride Sites in Photoactive Yellow Protein (Chloride-Free Reference Structure)
Classification: SIGNALING PROTEIN
Source organism: Halorhodospira halophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-10
Authors: Dyda, F., Schotte, F., Anfinrud, P., Cho, H.S.
PDB entry 9aza: Crystal structure of LolTv4
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penicillium expansum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2024-03-10
Authors: Gao, J., Hai, Y.
PDB entry 9azb: Crystal structure of LolTv5
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penicillium expansum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2024-03-11
Authors: Gao, J., Hai, Y.
PDB entry 9azc: In situ human 80S ribosome (Consensus map)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2024-03-11
Authors: Wei, Z., Yong, X.
PDB entry 9azg: Native nnhA in H32
Classification: HYDROLASE
Source organism: Mycobacterium sp. JS330
Experimental method: X-RAY DIFFRACTION
Resolution: 2.162 Å
Deposited: 2024-03-11
Authors: Peat, T.S., Newman, J.
PDB entry 9azh: Native nnhA in P1
Classification: HYDROLASE
Source organism: Mycobacterium sp. JS330
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-03-11
Authors: Peat, T.S., Newman, J.
PDB entry 9azi: NMR solution structure of cell-permeant miniature protein ZF5.3
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2024-03-11
Authors: Giudice, J.A., Kelly, M., Schepartz, A.
PDB entry 9azj: Structure of ubiquitinated NEMO UBAN K285C-Ub G76C bound to HOIP NZF1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2024-03-11
Authors: Michel, M.A., Scutts, S., Komander, D.
PDB entry 9azk: Macrocyclic inhibitors targeting the prime site of the fibrinolytic serine protease plasmin
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-03-11
Authors: Guojie, W.
PDB entry 9azl: Cryo-EM structure of the ABC transporter PCAT1 bound with MgADP class1
Classification: TRANSPORT PROTEIN
Source organism: Acetivibrio thermocellus ATCC 27405
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-03-11
Authors: Zhang, R., Jagessar, K.L., Polasa, A., Brownd, M., Stein, R., Moradi, M., Karakas, E., Mchaourab, H.S.
PDB entry 9azm: In situ human ribosome (Focused on 40S with SERBP1 CTD)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2024-03-11
Authors: Wei, Z., Yong, Z.
PDB entry 9azo: Crystal structure of CHMS Dehydrogenase PmdC from Comamonas testosteroni bound to cofactor NADP
Classification: OXIDOREDUCTASE
Source organism: Comamonas testosteroni ATCC 11996
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-03-11
Authors: Rodrigues, A.V., Moriarty, N.W., Pereira, J.H., Adams, P.D.
PDB entry 9azp: INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2024-03-11
Authors: Palmer, N.J., Barrie, K.R., Dominguez, R.
PDB entry 9azq: INF2 at the Barbed End of F-Actin with Incoming Actin
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2024-03-11
Authors: Palmer, N.J., Barrie, K.R., Dominguez, R.
PDB entry 9azr: Lineage 860 UCA Fab bound to A/Massachusetts/1/1990 hemagglutinin head
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-03-11
Authors: Maurer, D.P., Schmidt, A.G.
PDB entry 9azt: CH67 Fab bound to A/Massachusetts/1/1990 influenza hemagglutinin head with a G189E mutation (1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2024-03-11
Authors: Maurer, D.P., Schmidt, A.G.
PDB entry 9azu: Crystal structure of PDC-3 beta-lactamase in complex with taniborbactam
Classification: HYDROLASE/ANTIBIOTIC
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-03-11
Authors: Kumar, V., van den Akker, F.
PDB entry 9azv: CH67 Fab bound to A/Massachusetts/1/1990 influenza hemagglutinin head with a G189E mutation (2)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2024-03-11
Authors: Maurer, D.P., Schmidt, A.G.
PDB entry 9azw: Crystal structure of PDC-88 beta-lactamase in complex with taniborbactam
Classification: HYDROLASE/ANTIBIOTIC
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-03-11
Authors: Kumar, V., van den Akker, F.
PDB entry 9azx: Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with NDPr
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.395 Å
Deposited: 2024-03-11
Authors: Wallace, S.D., Bagde, S.R., Fromme, J.C.
PDB entry 9azy: Crystal structure of PDC-88 beta-lactamase
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-03-11
Authors: Kumar, V., van den Akker, F.
PDB entry 9azz: Crystal structure of outer membrane lipoprotein carrier protein (LolA) from Ehrlichia ruminantium
Classification: LIPID TRANSPORT
Source organism: Ehrlichia ruminantium str. Gardel
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-11
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9b00: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-03-11
Authors: Batool, Z., Pavlova, J.A., Paranjpe, M.N., Tereshchenkov, A.G., Lukianov, D.A., Osterman, I.A., Bogdanov, A.A., Sumbatyan, N.V., Polikanov, Y.S.
PDB entry 9b01: Catalytic mutant C357A nnhA in CHES buffer
Classification: HYDROLASE
Source organism: Mycobacterium sp. JS330
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-03-11
Authors: Peat, T.S., Newman, J.
PDB entry 9b02: nnhA C357A catalytic mutant in tris buffer
Classification: HYDROLASE
Source organism: Mycobacterium sp. JS330
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-03-11
Authors: Peat, T.S., Newman, J.
PDB entry 9b03: INF2 in the Middle of F-Actin (Up state)
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-03-11
Authors: Palmer, N.J., Barrie, K.R., Dominguez, R.
PDB entry 9b04: Cryo-EM structure of human uMtCK1 in complex with ADP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2024-03-11
Authors: Demir, M., Koepping, L., Zhao, J., Sergienko, E.
PDB entry 9b05: Cryo-EM structure of human uMtCK1
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-03-11
Authors: Demir, M., Koepping, L., Zhao, J., Sergienko, E.
PDB entry 9b06: Mycolicibacterium smegmatis ClpS with LeuThr dipeptide and Mg2+
Classification: PROTEIN BINDING
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-03-11
Authors: Presloid, C.J., Jiang, J., Beardslee, P.C., Anderson, H.R., Swayne, T.M., Schmitz, K.R.
PDB entry 9b07: Kynurenine monooxygenase from Pseudomonas fluorescens complexed with biphenylacetyltetrazole
Classification: FLAVOPROTEIN/INHIBITOR
Source organism: Pseudomonas fluorescens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2024-03-11
Authors: Phillips, R.S., Ma, W.
PDB entry 9b0a: GA10 nanobody bound to 2C7 peptide mimitope of Neisseria gonorrhoeae lipooligosaccharide
Classification: IMMUNE SYSTEM
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-03-11
Authors: Williamson, A., Walker, E., Kelton, W., Hicks, J.
PDB entry 9b0b: Structure of Optineurin bound to HOIP NZF1 domain
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-03-11
Authors: Michel, M.A., Scutts, S., Komander, D.
PDB entry 9b0c: Crystal structure of GenB2 in complex with gentamicin X2.
Classification: BIOSYNTHETIC PROTEIN
Source organism: Micromonospora echinospora
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-03-11
Authors: Bury, P.S., Araujo, N.C., Oliveira, G.S., Dias, M.V.B.
PDB entry 9b0e: Cryo-EM Structure of E.coli produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-amide-CoA bisubstrate probe and ADP
Classification: RNA BINDING PROTEIN
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2024-03-12
Authors: Zhou, M., Marmorstein, R.
PDB entry 9b0i: Cryo-EM Structure of Sf9 produced recombinant N-acetyltransferase 10 (NAT10) in complex with cytidine-amide-CoA bisubstrate probe and ADP/Mg2+.
Classification: RNA BINDING PROTEIN
Source organism: Thermochaetoides thermophila DSM 1495
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-03-12
Authors: Zhou, M., Marmorstein, R.
PDB entry 9b0k: INF2 in the Middle of F-Actin (Down state)
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2024-03-12
Authors: Palmer, N.J., Barrie, K.R., Dominguez, R.
PDB entry 9b0l: Cryo-EM structure of Acanthamoeba polyphaga mimivirus Fanzor2 ternary complex
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Acanthamoeba polyphaga mimivirus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-03-12
Authors: Qayyum, M.Z., Schargel, R.D., Tanwar, A.S., Kellogg, E.H., Kalathur, R.C.
PDB entry 9b0m: Crystal structure of Macrophage migration inhibitory factor from Plasmodium vivax
Classification: CYTOKINE
Source organism: Plasmodium vivax Sal-1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-03-12
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9b0p: In situ human Hibernating class1 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2024-03-12
Authors: Wei, Z., Yong, X.
PDB entry 9b0q: In situ human top-back di-ribosome structure (Composite map)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-12
Authors: Wei, Z., Yong, Z.
PDB entry 9b0s: In situ human top-top di-ribosome structure (Composite map)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-03-12
Authors: Wei, Z., Yong, X.
PDB entry 9b0t: Cryo-EM structure of E227Q variant of uMtCK1 in complex with transition state analog
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-03-12
Authors: Demir, M., Koepping, L., Zhao, J., Sergienko, E.
PDB entry 9b0u: Cryo-EM structure of E227Q variant of uMtCK1 incubated with ADP and phosphocreatine at pH 8.0
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.44 Å
Deposited: 2024-03-12
Authors: Demir, M., Koepping, L., Zhao, J., Sergienko, E.
PDB entry 9b0x: Artemia franciscana ATP synthase state 2 (composite structure), pH 7.0
Classification: MEMBRANE PROTEIN
Source organism: Artemia franciscana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-03-12
Authors: Mnatsakanyan, N., Mello, J.F.R.
PDB entry 9b0y: SARS CoV-2 Spike protein Ectodomain with internal tag, all RBD-down conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.32 Å
Deposited: 2024-03-12
Authors: Singh, S., Hasan, S.S.
PDB entry 9b0z: Structure of Optineurin bound to HOIP NZF1 domain and M1-linked diubiquitin, crystal form 2
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-03-12
Authors: Michel, M.A., Scutts, S., Komander, D.
PDB entry 9b10: Mycolicibacterium smegmatis ClpS with TyrArg dipeptide and Mg2+
Classification: PROTEIN BINDING
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2024-03-12
Authors: Presloid, C.J., Jiang, J., Beardslee, P.C., Anderson, H.R., Swayne, T.M., Schmitz, K.R.
PDB entry 9b12: Structure of Optineurin bound to HOIP NZF1 domain and M1-linked diubiquitin, crystal form 1
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2024-03-12
Authors: Michel, M.A., Scutts, S., Komander, D.
PDB entry 9b13: Cryo-EM structure of phospholipase Cepsilon PH-COOH in complex with an antigen-binding fragment (composite structure)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-03-12
Authors: Samassekou, K., Lyon, A.M.
PDB entry 9b14: Cryo-EM structure of human uMtCK1 in complex with transition state analog
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2024-03-13
Authors: Demir, M., Koepping, L., Zhao, J., Sergienko, E.
PDB entry 9b15: Superfamily 2 helicase Hel308 containing the beta-hairpin from DNA pol theta helicase-like domain
Classification: DNA BINDING PROTEIN
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2024-03-13
Authors: Eckenroth, B.E., Doublie, S.
PDB entry 9b16: Cryo-EM structure of human uMtCK1 in complex with ADP and covalent inhibitor CKi
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2024-03-13
Authors: Demir, M., Koepping, L., Zhao, J., Sergienko, E.
PDB entry 9b17: Crystal Structure of human Tryptophan 2,3-dioxygenase in complex with PAN1 inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2024-03-13
Authors: Geeraerts, Z., Yeh, S.-R.
PDB entry 9b18: EV-D68 in complex with inhibitor Jun11-53-7
Classification: VIRUS
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-03-13
Authors: Klose, T., Kuhn, R.J., Jun, W., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9b19: EV-D68 in complex with inhibitor Jun11-54-1
Classification: VIRAL PROTEIN
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-03-13
Authors: Klose, T., Kuhn, R.J., Jun, W., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9b1a: EV-D68 in complex with inhibitor Jun11-69-5
Classification: VIRAL PROTEIN
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-03-13
Authors: Klose, T., Kuhn, R.J., Jun, W., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9b1b: EV-D68 in complex with inhibitor Jun11-78-7
Classification: VIRAL PROTEIN
Source organism: enterovirus D68
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2024-03-13
Authors: Klose, T., Kuhn, R.J., Jun, W., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9b1d: Cryo-EM structure of native SWR1 bound to DNA (composite structure)
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae W303; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-13
Authors: Louder, R.K., Park, G., Wu, C.
PDB entry 9b1e: Cryo-EM structure of native SWR1 bound to nucleosome (composite structure)
Classification: GENE REGULATION
Source organism: Drosophila melanogaster; Saccharomyces cerevisiae; Saccharomyces cerevisiae W303; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2024-03-13
Authors: Louder, R.K., Park, G., Wu, C.
PDB entry 9b1f: Human urate transporter 1 URAT1 in apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1g: Human urate transporter 1 URAT1 in complex with dotinurad
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1h: Human urate transporter 1 URAT1 in complex with lesinurad
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1i: Human urate transporter 1 URAT1 in complex with verinurad
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1j: Urate bound human URAT1 in the inward-facing state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1k: Urate bound human URAT1 in the occluded state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1l: Urate bound human URAT1 in the outward-facing state.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1m: Pyrazinoate bound human URAT1 in the inward-facing state (site1)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1n: Pyrazinoate bound human URAT1 in the inward-facing state (site2)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1o: Pyrazinoate bound human URAT1 in the inward-facing state (site3)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-03-13
Authors: Dai, Y., Lee, C.H.
PDB entry 9b1p: Mycolicibacterium smegmatis ClpS with TrpSer dipeptide and Mg2+
Classification: PROTEIN BINDING
Source organism: Mycolicibacterium smegmatis MC2 155
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-03-13
Authors: Presloid, C.J., Jiang, J., Beardslee, P.C., Anderson, H.R., Swayne, T.M., Schmitz, K.R.
PDB entry 9b1q: Crystal Structure of human Tryptophan 2,3-dioxygenase in complex with PYN1 inhibitor
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.624 Å
Deposited: 2024-03-13
Authors: Geeraerts, Z., Yeh, S.-R.
PDB entry 9b1r: Functional implication of the homotrimeric multidomain vacuolar sorting receptor 1 from Arabidopsis thaliana
Classification: PROTEIN TRANSPORT
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2024-03-13
Authors: Park, H., Youn, B., Park, D.J., Puthanveettil, S.V., Kang, C.
PDB entry 9b1u: Crystal structure of PqqT with PQQ bound
Classification: TRANSPORT PROTEIN
Source organism: Methylorubrum extorquens (strain CM4 / NCIMB 13688)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2024-03-13
Authors: Boggs, D., Bruchs, A., Thompson, P., Olshansky, L., Bridwell-Rabb, J.
PDB entry 9b1v: Crystal structure of PqqT with PQQ and Gd3+ bound
Classification: TRANSPORT PROTEIN
Source organism: Methylorubrum extorquens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-03-13
Authors: Boggs, G.D., Bruchs, A.T., Thompson, P.J., Olshansky, L., Bridwell-Rabb, J.
PDB entry 9b1w: HWS19 strain WT mycobacterial ribosome
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-03-14
Authors: Young, I.D., Chen, Y., Javid, B., Fraser, J.S.
PDB entry 9b1x: HWS19 strain gidB mutant mycobacterial ribosome
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2024-03-14
Authors: Chen, Y., Young, I.D., Fraser, J.S., Javid, B.
PDB entry 9b1y: WT strain WT mycobacterial ribosome
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2024-03-14
Authors: Chen, Y., Young, I.D., Fraser, J.S., Javid, B.
PDB entry 9b1z: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (Apo)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2024-03-14
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9b20: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (AMP bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2024-03-14
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9b21: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose bound, Orthorhombic P form)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-03-14
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9b22: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose and AMP bound)
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2024-03-14
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9b23: Cryo-EM structure of Nap1 core
Classification: CHAPERONE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-03-14
Authors: Jiou, J., Fung, H.Y.J., Chook, Y.M.
PDB entry 9b24: WT strain gidB mutant mycobacterial ribosome
Classification: RIBOSOME
Source organism: Mycolicibacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2024-03-14
Authors: Young, I.D., Chen, Y., Javid, B., Fraser, J.S.
PDB entry 9b25: Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with NA98
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2024-03-14
Authors: Nwachukwu, J.C., Min, C.K., Papa, A., Rangarajan, E.S., Izard, T., Sharma, A., Nettles, K.W.
PDB entry 9b26: Crystal structure of cod allergen Gad m 1.0201 coordinating lanthanum
Classification: ALLERGEN
Source organism: Gadus morhua
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2024-03-14
Authors: O'Malley, A., Chruszcz, M.
PDB entry 9b27: Dia1 at the Barbed End of F-Actin
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2024-03-14
Authors: Palmer, N.J., Barrie, K.R., Dominguez, R.
PDB entry 9b28: Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with primidone
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-03-14
Authors: Yin, Y., Park, C.G., Feng, S., Zhang, F., Guan, Z., Sharma, K., Borgnia, M.J., Im, W., Lee, S.-Y.
PDB entry 9b29: Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with cholesteryl hemisuccinate
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-03-14
Authors: Yin, Y., Park, C.G., Feng, S., Zhang, F., Guan, Z., Sharma, K., Borgnia, M.J., Im, W., Lee, S.-Y.
PDB entry 9b2a: Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with the neurosteroid pregnenolone sulfate and the synthetic agonist CIM 0216
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2024-03-14
Authors: Yin, Y., Park, C.G., Feng, S., Zhang, F., Guan, Z., Sharma, K., Borgnia, M.J., Im, W., Lee, S.-Y.
PDB entry 9b2b: Estrogen Receptor Alpha Ligand Binding Domain in Complex with a Complete Estrogen Receptor Antagonists that Favors Tetramer Formation
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-03-14
Authors: Fink, E.C., Chawla, R., Wells, K.S., Barratt, S., Myles, D.C., Pena, G., Robello, B.W., Ng, R., Fanning, S.W.
PDB entry 9b2c: Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Lama glama; Mus sp.; Porcine deltacoronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-03-14
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 9b2d: Yeast Rad51-ssDNA filament
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-03-14
Authors: Liu, J., Gore, S., Heyer, W.-D.
PDB entry 9b2e: DHNA associated with an inhibitor
Classification: LYASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-03-15
Authors: Czeczot, A.M., Silva, E.E.D., Timmers, L.F.S.M., Machado, P., Basso, L.A., Bizarro, C.V.
PDB entry 9b2f: Crystal structure of short chain dehydrogenase reductase 9 (short chain dehydrogenase reductase 9C4) in complex with NAD+
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.662 Å
Deposited: 2024-03-15
Authors: Pakhomova, S., Belyaeva, O.V., Boeglin, W.E., Kedishvili, N.Y., Brash, A.R., Newcomer, M.E., Popov, K.M.
PDB entry 9b2g: Crystal structure of short chain dehydrogenase reductase 9 (short chain dehydrogenase reductase 9C4) in complex with NADH
Classification: OXIDOREDUCTASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-03-15
Authors: Pakhomova, S., Belyaeva, O.V., Boeglin, W.E., Kedishvili, N.Y., Brash, A.R., Newcomer, M.E., Popov, K.M.
PDB entry 9b2h: HIV-1 wild type protease with GRL-072-17A, a substituted tetrahydrofuran derivative based on Darunavir as P2 group
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2024-03-15
Authors: Wang, Y.-F., Agniswamy, J., Ghosh, A.K., Weber, I.T.
PDB entry 9b2i: Structure of the quorum quenching lactonase GcL G156P mutant
Classification: HYDROLASE
Source organism: Parageobacillus caldoxylosilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-03-15
Authors: Corbella, M., Bravo, J.A., Demkiv, A.O., Calixto, A.R., Sompiyachoke, K., Bergonzi, C., Kamerlin, S.C.L., Elias, M.
PDB entry 9b2j: Structure of the quorum quenching lactonase GcL I237M mutant
Classification: HYDROLASE
Source organism: Parageobacillus caldoxylosilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2024-03-15
Authors: Corbella, M., Bravo, J.A., Demkiv, A.O., Calixto, A.R., Sompiyachoke, K., Bergonzi, C., Kamerlin, S.C.L., Elias, M.
PDB entry 9b2k: SpCas9 with dual-guide RNA in open conformation
Classification: HYDROLASE
Source organism: Streptococcus pyogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2024-03-15
Authors: Korolev, S., Gagnon, K.
PDB entry 9b2l: Structure of the quorum quenching lactonase GcL D122N mutant - bimetallic center
Classification: HYDROLASE
Source organism: Parageobacillus caldoxylosilyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-03-15
Authors: Corbella, M., Bravo, J.A., Demkiv, A.O., Calixto, A.R., Sompiyachoke, K., Bergonzi, C., Kamerlin, S.C.L., Elias, M.