LiteFold/PDB huggingface dataset:
PDB entry 9p7a: In situ human hibernating class2 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7c: In situ human Hibernating class3 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7d: In situ human Hibernating class4 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7e: In situ human Hibernating class5 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7f: In situ HHT and CHX treated A-P state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7g: In situ HHT and CHX treated A-P-Z state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7h: In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7i: In situ HHT and CHX treated human eEF1A-A/T-P-Z state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7j: In situ HHT and CHX treated human P state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7k: In situ human post eEF1A-A/T-P-E state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7l: In situ human Post-eEF1A-AT-P state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7n: In situ human Post-eEF1A-A/T-P-Z state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-06-20
Authors: Wei, Z., Yong, X.
PDB entry 9p7o: In situ human AT-P-Z state ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-06-20
Authors: Zheng, W., Xiong, Y.
PDB entry 9p7q: 273K human S-adenosylmethionine decarboxylase
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2025-06-21
Authors: Patel, J.R., Bonzon, T.J., Bahkt, T., Fagbohun, O.O., Clinger, J.A.
PDB entry 9p7r: In situ structure of the sheathed FlaB flagellar filament in Vibrio cholerae
Classification: MOTOR PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-06-21
Authors: Guo, W., Kumar, R.
PDB entry 9p7s: Avian TRPM8 (Parus major) closed, ligand-free structure resolved in cell vesicles using cryo-EM
Classification: MEMBRANE PROTEIN
Source organism: Parus major
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-21
Authors: Choi, K.Y., Lin, X., Cheng, Y., Julius, D.
PDB entry 9p7w: In situ human A-P state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-06-22
Authors: Zheng, W., Xiong, Y.
PDB entry 9p7x: In situ human A-P-Z state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-06-22
Authors: Zheng, W., Xiong, Y.
PDB entry 9p7y: In situ human A-P-E state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-06-22
Authors: Zheng, W., Xiong, Y.
PDB entry 9p7z: NTSR1-Gi-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p80: NTSR1-Gi-NTS(8-13) Complex in the Non-Canonical, AHD Open State (NC-Open-Apo)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p81: NTSR1-Gi-NTS(8-13), GTP-bound Complex in the Canonical, AHD Open State (C-Open-GTP)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p82: NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State (C-Closed-GTP)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p83: NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Open State (NC-Open-GTP)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p84: NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Closed State (NC-Closed-GTP)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p85: NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State, 3DVA Sorted (C-Closed*-GTP)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p86: NTSR1-G11-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p87: NTSR1-G11-NTS(8-13) Complex in the Canonical, AHD Partially Closed State (C-P-Closed-Apo)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p88: NTSR1-G11-NTS(8-13) Complex in the Non-Canonical, AHD Open State (NC-Open-Apo)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p89: NTSR1-G11-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State 3DVA Separated 1 (C-Closed-GTP)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p8a: NTSR1-G11-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State 3DVA Separated 2 (C-Closed*-GTP)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-06-22
Authors: Robertson, M.J.
PDB entry 9p8b: In situ human eEF1A-A/T-P-E state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-06-22
Authors: Wei, Z., Yong, X.
PDB entry 9p8c: In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-06-22
Authors: Wei, Z., Yong, X.
PDB entry 9p8h: In situ human A/P-P/E state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-06-23
Authors: Zheng, W., Xiong, Y.
PDB entry 9p8i: In situ HHT and CHX treated human P-Z state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2025-06-23
Authors: Wei, Z., Yong, X.
PDB entry 9p8l: Structure of Lockin in complex with 3'cADPR
Classification: VIRAL PROTEIN
Source organism: phage metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-06-23
Authors: Chang, R.B., Kranzusch, P.J.
PDB entry 9p8s: Structure of CloA apo
Classification: HYDROLASE
Source organism: Salmonella enterica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2025-06-23
Authors: Yamaguchi, S., Fernandez, S.G., Wassarman, D.R., Luder, M., Schwede, F., Kranzusch, P.J.
PDB entry 9p8t: Structure of CloA co-expressed with CloB
Classification: HYDROLASE
Source organism: Salmonella enterica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-06-23
Authors: Yamaguchi, S., Fernandez, S.G., Wassarman, D.R., Luder, M., Schwede, F., Kranzusch, P.J.
PDB entry 9p8u: Structure of CloA in complex with dGTP and p3diT
Classification: HYDROLASE
Source organism: Salmonella enterica; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2025-06-23
Authors: Yamaguchi, S., Fernandez, S.G., Wassarman, D.R., Luder, M., Schwede, F., Kranzusch, P.J.
PDB entry 9p8v: Structure of CloA in complex with dGTP and dTTP
Classification: HYDROLASE
Source organism: Salmonella enterica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-06-23
Authors: Yamaguchi, S., Fernandez, S.G., Wassarman, D.R., Luder, M., Schwede, F., Kranzusch, P.J.
PDB entry 9p8w: Anti-phage dGTPase from Shewanella putrefaciens CN-32
Classification: HYDROLASE
Source organism: Shewanella putrefaciens CN-32
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-06-23
Authors: Yamaguchi, S., Fernandez, S.G., Wassarman, D.R., Luder, M., Schwede, F., Kranzusch, P.J.
PDB entry 9p8x: Crystal structure of GITR in complex with ligand-non-competitive Ab#1 Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2025-06-23
Authors: Huang, C.-S., Mosyak, L., Maben, Z.
PDB entry 9p8y: Human TRPM8 closed, ligand-free structure resolved in GDN using cryo-EM
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-23
Authors: Choi, K.Y., Lin, X., Cheng, Y., Julius, D.
PDB entry 9p8z: Crystal Structure of GTP cyclohydrolase 1 (FolE) from Mycobacterium tuberculosis
Classification: HYDROLASE
Source organism: Plasmodium vivax Sal-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2025-06-23
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9p90: Avian TRPM8 (Parus major) desensitized, fully-swapped, ligand-free structure resolved in cell vesicles using cryo-EM
Classification: MEMBRANE PROTEIN
Source organism: Parus major
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-23
Authors: Choi, K.Y., Lin, X., Cheng, Y., Julius, D.
PDB entry 9p91: Avian TRPM8 (Parus major) semi-swapped, ligand-free structure resolved in cell vesicles using cryo-EM
Classification: MEMBRANE PROTEIN
Source organism: Parus major
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-23
Authors: Choi, K.Y., Lin, X., Cheng, Y., Julius, D.
PDB entry 9p92: Cryo-EM structure of the PAC1nR-VIP-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-06-24
Authors: Piper, S.J., Lu, J., Sexton, P., Wootten, D.
PDB entry 9p93: Cryo-EM structure of the PAC1sR-VIP-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-06-24
Authors: Piper, S.J., Lu, J., Sexton, P., Wootten, D.
PDB entry 9p94: Cryo-EM structure of the PAC1sR-PACAP27-Gs complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-24
Authors: Piper, S.J., Sexton, P., Wootten, D.
PDB entry 9p95: CryoEM structure of integrin alpha4beta7 bound to MAdCAM-1
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-06-24
Authors: Hollis, J.A., Campbell, M.G.
PDB entry 9p96: CryoEM structure of the apo integrin alpha4beta7
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-24
Authors: Hollis, J.A., Campbell, M.G.
PDB entry 9p97: CryoEM structure of the closed integrin alphaEbeta7 bound to fab LF61
Classification: CELL ADHESION
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-06-24
Authors: Hollis, J.A., Campbell, M.G.
PDB entry 9p98: CryoEM structure of the open integrin alphaEbeta7 bound to fab LF61
Classification: CELL ADHESION
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-06-24
Authors: Hollis, J.A., Campbell, M.G.
PDB entry 9p99: CryoEM structure of integrin alphaEbeta7 bound to E-cadherin
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-06-24
Authors: Hollis, J.A., Campbell, M.G.
PDB entry 9p9b: Activated GluA4 homotetrameric AMPAR.
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-06-24
Authors: Hale, W.D., Huganir, R.L., Twomey, E.C.
PDB entry 9p9c: Active substate 1 of the GluA4 homotetramer.
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2025-06-24
Authors: Hale, W.D., Huganir, R.L., Twomey, E.C.
PDB entry 9p9d: Active substate 2 of the GluA4 homotetramer.
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2025-06-24
Authors: Hale, W.D., Huganir, R.L., Twomey, E.C.
PDB entry 9p9e: Active substate 3 of the GluA4 homotetramer.
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2025-06-24
Authors: Hale, W.D., Huganir, R.L., Twomey, E.C.
PDB entry 9p9f: Active substate 4 of the GluA4 homotetramer.
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.89 Å
Deposited: 2025-06-24
Authors: Hale, W.D., Huganir, R.L., Twomey, E.C.
PDB entry 9p9g: Active substate 5 of the GluA4 homotetramer.
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.06 Å
Deposited: 2025-06-24
Authors: Hale, W.D., Huganir, R.L., Twomey, E.C.
PDB entry 9p9h: In situ human unrotated hibernating with CCDC124 state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-06-24
Authors: Wei, Z., Yong, X.
PDB entry 9p9i: In situ human unrotated hibernating without CCDC124 state 80S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-06-24
Authors: Wei, Z., Yong, X.
PDB entry 9p9j: In situ human 60S ribosome
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-06-24
Authors: Wei, Z., Yong, X.
PDB entry 9p9k: In situ human 60S ribosome with EIF6
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-06-24
Authors: Wei, Z., Yong, X.
PDB entry 9p9l: Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2025-06-24
Authors: Wu, C., Meuser, M.E., Xiong, Y.
PDB entry 9p9m: CA-SP1 immature lattice assembled in vitro with inhibitor lenacapavir (dialyzed to 50nM)
Classification: VIRUS LIKE PARTICLE
Source organism: Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-06-24
Authors: Wu, C., Meuser, M.E., Xiong, Y.
PDB entry 9p9n: Crystal structure of Rv0097 in apo state
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.28 Å
Deposited: 2025-06-24
Authors: Ye, N., Drennan, C.L.
PDB entry 9p9o: Crystal structure of Rv0097 with Fe and CADA bound
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.12 Å
Deposited: 2025-06-24
Authors: Ye, N., Drennan, C.L.
PDB entry 9p9p: Crystal structure of Rv0097 G204F variant in apo state
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-06-24
Authors: Ye, N., Drennan, C.L.
PDB entry 9p9u: EGFR-KDD with compound2
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-06-24
Authors: Han, L., Petrova, Z.O., Lemmon, M.A.
PDB entry 9p9v: Human ClpX initial assembly
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-06-24
Authors: Chen, W.C.
PDB entry 9pa7: In situ human 80S consensus ribosome with EBP1
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-06-25
Authors: Wei, Z., Yong, X.
PDB entry 9pa8: NmTbpB and Tf protein complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Neisseria meningitidis serogroup B
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-06-25
Authors: Dubey, S., Noinaj, N.
PDB entry 9pa9: Crystal structure of SARS-CoV-2 3CLpro with ALG-097608 (Inhibitor 1)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-06-25
Authors: Reddem, E.R., Forouhad, F., Shapiro, L., Stoycheva, A.
PDB entry 9paa: Crystal structure of HCoV-229E 3CLpro with ALG-0987608 (inhibitor 1)
Classification: VIRAL PROTEIN
Source organism: Human coronavirus 229E
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-06-25
Authors: Reddem, E.R., Forouhad, F., Shapiro, L., Stoycheva, A.
PDB entry 9pac: Crystal structure of MERS-CoV 3CLpro with ALG-097608 (Inhibitor 1)
Classification: VIRAL PROTEIN
Source organism: Middle East respiratory syndrome-related coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-06-25
Authors: Reddem, E.R., Forouhad, F., Shapiro, L., Stoycheva, A.
PDB entry 9pad: Crystal structure of IBV-3CLpro with ALG-097608 (Inhibitor 1)
Classification: VIRAL PROTEIN
Source organism: Infectious bronchitis virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-06-25
Authors: Reddem, E.R., Forouhad, F., Shapiro, L., Stoycheva, A.
PDB entry 9pae: Crystal structure of HCoV OC43 3CLpro with ALG-097608 (inhibitor 1)
Classification: VIRAL PROTEIN
Source organism: Human coronavirus OC43
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2025-06-25
Authors: Reddem, E.R., Forouhad, F., Shapiro, L., Stoycheva, A.
PDB entry 9paf: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 6
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2025-06-25
Authors: White, K.I., Brunger, A.T.
PDB entry 9pag: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 7
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2025-06-25
Authors: White, K.I., Brunger, A.T.
PDB entry 9pai: CLEAVED SUBSTRATE VARIANT OF PLASMINOGEN ACTIVATOR INHIBITOR-1
Classification: HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 1999-03-11
Authors: Aertgeerts, K., De Bondt, H.L., De Ranter, C.J., Declerck, P.J.
PDB entry 9pap: STRUCTURE OF PAPAIN REFINED AT 1.65 ANGSTROMS RESOLUTION
Classification: HYDROLASE (SULFHYDRYL PROTEINASE)
Source organism: Carica papaya
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 1986-03-31
Authors: Kamphuis, I.G., Drenth, J.
PDB entry 9par: Avian TRPM8 (Parus major) semi-swapped, ligand-free structure at high pH and 4 degrees Celsius resolved in GDN using cryo-EM
Classification: MEMBRANE PROTEIN
Source organism: Parus major
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-25
Authors: Choi, K.Y., Lin, X., Cheng, Y., Julius, D.
PDB entry 9pas: Crystal structure of Rv0097 G204F variant with vanadyl and CADA bound
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-06-25
Authors: Ye, N., Drennan, C.L.
PDB entry 9pat: Antibody (1B2) Bound Rifamycin Synthetase Module 1 in the Transacylation Mode
Classification: Transferase/Immune System
Source organism: Amycolatopsis mediterranei; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2025-06-25
Authors: Cogan, D.P., Liu, C., West, R.C., Chen, M.
PDB entry 9pau: Crystal structure of Rv0097 G204F variant with vanadyl and CABA bound
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-06-25
Authors: Ye, N., Drennan, C.L.
PDB entry 9pav: Antibody (1B2) Bound Rifamycin Synthetase Module 1 in the Elongation Mode
Classification: Transferase/Immune System
Source organism: Amycolatopsis mediterranei; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2025-06-25
Authors: Cogan, D.P., Liu, C., West, R.C., Chen, M.
PDB entry 9paw: Cryo-EM structure of the engineered HflK/C variant stabilized in the closed conformation via disulfide bond crosslinking.
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-06-25
Authors: Iqbal, N., Ghanbarpour, A.
PDB entry 9pax: Crystal structure of Rv0097 F102W variant in apo state
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2025-06-25
Authors: Ye, N., Drennan, C.L.
PDB entry 9pay: Crystal structure of Rv0097 F102W variant with vanadyl and CADA bound
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-25
Authors: Ye, N., Drennan, C.L.
PDB entry 9pb1: Human ClpP initial assembly
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-06-26
Authors: Chen, W.C.
PDB entry 9pb5: Human TRPM8 menthol bound structure at 4 degrees Celsius resolved in cell vesicles using cryo-EM
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-26
Authors: Choi, K.Y., Lin, X., Cheng, Y., Julius, D.
PDB entry 9pb6: Avian TRPM8 (Parus major) menthol bound structure resolved in cell vesicles using cryo-EM
Classification: MEMBRANE PROTEIN
Source organism: Parus major
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-06-26
Authors: Choi, K.Y., Lin, X., Cheng, Y., Julius, D.
PDB entry 9pb9: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 8
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2025-06-26
Authors: White, K.I., Brunger, A.T.
PDB entry 9pba: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 9
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2025-06-26
Authors: White, K.I., Brunger, A.T.
PDB entry 9pbb: 293K human S-adenosylmethionine decarboxylase
Classification: LYASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2025-06-26
Authors: Patel, J.R., Bonzon, T.J., Bahkt, T., Fagbohun, O.O., Clinger, J.A.
PDB entry 9pbc: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) L50F/E166V Double Mutant
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-06-26
Authors: Kohaal, N., Lewandowski, E.M., Wang, J., Chen, Y.
PDB entry 9pbe: In situ human 80S ribosome (composite map)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2025-06-26
Authors: Wei, Z., Yong, X.
PDB entry 9pbf: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 10
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2025-06-26
Authors: White, K.I., Brunger, A.T.
PDB entry 9pbg: TCR 19.2 complex with YEIH-HLA B*27:05
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-26
Authors: Xiang, X., Jude, K.M., Wang, N., Garcia, K.C.
PDB entry 9pbh: AS19.2 TCR complex with PSG5-HLA B*27:05
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-06-26
Authors: Jude, K.M., Wang, N., Garcia, K.C.
PDB entry 9pbj: Crystal structure of Rv0097 F102Y variant in apo state
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-06-26
Authors: Ye, N., Drennan, C.L.
PDB entry 9pbn: Crystal structure of Rv0097 F102Y variant with vanadyl and CADA bound
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2025-06-26
Authors: Ye, N., Drennan, C.L.
PDB entry 9pbu: Crystal structure of Rv0097 F102A variant in apo state
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-06-26
Authors: Ye, N., Drennan, C.L.
PDB entry 9pbv: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 11
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2025-06-26
Authors: White, K.I., Brunger, A.T.
PDB entry 9pbx: Crystal structure of Rv0097 F102A variant with vanadyl bound
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-06-26
Authors: Ye, N., Drennan, C.L.
PDB entry 9pc3: 21bin20S complex (NSF-alphaSNAP-2:1 syntaxin-1a:SNAP-25), non-hydrolyzing, class 12
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2025-06-26
Authors: White, K.I., Brunger, A.T.
PDB entry 9pc5: Crystal structure of Rv0097 with 5 mM CADA soaked (CADA not bound)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-06-27
Authors: Ye, N., Drennan, C.L.
PDB entry 9pc6: Antibody (1B2) Bound Crosslinked Rifamycin Synthetase Module 1 with a C-terminal Type II Thioesterase
Classification: Transferase/Immune System
Source organism: Amycolatopsis mediterranei; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2025-06-27
Authors: Cogan, D.P., Liu, C., West, R.C., Chen, M.
PDB entry 9pc9: Structure of Synaptic Vesicle Protein 2A Bound to UCB7361
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-06-27
Authors: Mittal, A., Martin, M.F., Ledecq, M., Horanyi, P.S., Coleman, J.A.
PDB entry 9pca: HUMAN PRMT5:MEP50 COMPLEX IN COMPLEX WITH LIGAND 18
Classification: TRANSLOCASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-06-27
Authors: Milligan, C.
PDB entry 9pcb: Structure of Synaptic Vesicle Protein 2A Bound to UCB-J
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2025-06-27
Authors: Mittal, A., Martin, M.F., Ledecq, M., Horanyi, P.S., Coleman, J.A.
PDB entry 9pcl: Crystal structure of Rv0097 with 10 mM CADA soaked (CADA bound)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2025-06-27
Authors: Ye, N., Drennan, C.L.
PDB entry 9pcm: Crystal structure of Rv0097 with Fe, CADA, and alpha-ketoglutarate bound (ternary complex)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-06-27
Authors: Ye, N., Drennan, C.L.
PDB entry 9pcn: Crystal structure of Rv0097 with vanadyl and CADA bound
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2025-06-27
Authors: Ye, N., Drennan, C.L.
PDB entry 9pco: Crystal structure of Rv0097 with 5 mM CADA soaked (CADA not bound) and 5 mM alpha-ketoglutarate soaked (alpha-ketoglutarate bound)
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-06-27
Authors: Ye, N., Drennan, C.L.
PDB entry 9pcp: NER dual incision complex - NoG
Classification: DNA binding protein/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-06-28
Authors: Kim, J., Li, C.L., Yang, W.
PDB entry 9pcq: Phosphorylation of a Conserved Aspartate at the Eukaryotic Elongation Factor 2 Kinase Catalytic Site
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-28
Authors: Piserchio, A., Isiorho, E.A., Dalby, K., Ghose, R.
PDB entry 9pcs: Crystal structure of Dihydrodipicolinate Synthase from Mycobacterium tuberculosis in complex with pyruvate
Classification: LYASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-06-29
Authors: Rosa, L.V.S., Dias, M.V.B.
PDB entry 9pct: Structure of Porcine Trypsin Crystals Grown from PEG Complexed with Crystallization Additives III
Classification: PEPTIDE BINDING PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-06-29
Authors: McPherson, A.
PDB entry 9pcx: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 14
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.03 Å
Deposited: 2025-06-29
Authors: White, K.I., Brunger, A.T.
PDB entry 9pcy: HIGH-RESOLUTION SOLUTION STRUCTURE OF REDUCED FRENCH BEAN PLASTOCYANIN AND COMPARISON WITH THE CRYSTAL STRUCTURE OF POPLAR PLASTOCYANIN
Classification: ELECTRON TRANSPORT
Source organism: Phaseolus vulgaris
Experimental method: SOLUTION NMR
Deposited: 1991-03-18
Authors: Moore, J.M., Lepre, C.A., Gippert, G.P., Chazin, W.J., Case, D.A., Wright, P.E.
PDB entry 9pcz: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 15
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-06-29
Authors: White, K.I., Brunger, A.T.
PDB entry 9pd0: Panoptes OptS minimal CRISPR polymerase (mCpol) with non-hydrolyzable ligand ApCpp from Klebsiella pneumoniae strain KP67
Classification: ANTIVIRAL PROTEIN
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2025-06-29
Authors: Dinh, D.M., Morehouse, B.R.
PDB entry 9pd1: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 20
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2025-06-29
Authors: White, K.I., Brunger, A.T.
PDB entry 9pd2: Crystal structure of PILRA in complex with Fab portion of antagonist antibody
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.579 Å
Deposited: 2025-06-30
Authors: Kung, J.E.
PDB entry 9pd3: NER dual incision complex - DuIS
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-06-30
Authors: Li, C.L., Kim, J., Yang, W.
PDB entry 9pd4: NER dual incision complex - DuIM
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-30
Authors: Li, C.L., Kim, J., Yang, W.
PDB entry 9pd5: NER dual incision complex - NoF
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2025-06-30
Authors: Li, C.L., Kim, J., Yang, W.
PDB entry 9pd8: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 21
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å
Deposited: 2025-06-30
Authors: White, K.I., Brunger, A.T.
PDB entry 9pda: Structure of Porcine Trypsin Crystals Grown From PEG and Complexed With Crystallization Additives IV
Classification: PEPTIDE BINDING PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.18 Å
Deposited: 2025-06-30
Authors: McPherson, A.
PDB entry 9pdb: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 22
Classification: HYDROLASE
Source organism: Cricetulus griseus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-06-30
Authors: White, K.I., Brunger, A.T.
PDB entry 9pdd: 22bin20S complex (NSF-alphaSNAP-2:2 syntaxin-1a:SNAP-25), hydrolyzing, class 29
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2025-06-30
Authors: White, K.I., Brunger, A.T.
PDB entry 9pde: Three-dimensional structure of kinase inhibitor Palbociclib-HIV TAR complex
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2025-06-30
Authors: Ramireddy, R.R., Vidadala, V.N., Chaubey, B., Olsen, G.L., Varani, G.
PDB entry 9pdf: Three-dimensional structure of kinase inhibitor Palbociclib-HIV TAR complex
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2025-06-30
Authors: Ramireddy, R.R., Vidadala, V.N., Chaubey, B., Olsen, G.L., Varani, G.
PDB entry 9pdg: Three-dimensional structure of kinase inhibitor Palbociclib-HIV TAR complex
Classification: RNA
Experimental method: SOLUTION NMR
Deposited: 2025-06-30
Authors: Ramireddy, R.R., Vidadala, V.N., Chaubey, B., Olsen, G.L., Varani, G.
PDB entry 9pdh: X-ray structure of WT Drosophila Ahcy bound to NAD and adenosine at 2.50 A
Classification: HYDROLASE
Source organism: Drosophila melanogaster
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-06-30
Authors: Singhal, K., Mesecar, A.D.
PDB entry 9pdi: Nub1/Fat10-processing human 26S proteasome with Rpt2 at top of spiral staircase and partially unfolded Eos (AAA+ motor locally refined)
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-06-30
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9pdl: Nub1/Fat10-processing human 26S proteasome with Rpt5 at top of spiral staircase (AAA+ locally refined)
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-06-30
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9pdn: Nub1/Fat10-processing human 26S proteasome with Rpt1 at top of spiral staircase (AAA+ locally refined)
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-06-30
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9pdp: In situ cryoEM structure of bacteriophage P22 portal barrel
Classification: VIRAL PROTEIN
Source organism: Lederbergvirus P22
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-06-30
Authors: Yu, H., Molineux, I.J., Liu, J.
PDB entry 9pdq: Human OCTN2 bound to carnitine in the occluded conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-06-30
Authors: Davies, J.S., Zeng, Y.Z., Stewart, A.G.
PDB entry 9pdx: Human antibody Fab MPV513 bound to hMPV DsCav-ES2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.94 Å
Deposited: 2025-07-01
Authors: Ghazi Esfahani, B., Mousa, J., Khalil, A.M.
PDB entry 9pdy: Human antibody Fab MPV510 bound to hMPV DsCav-ES2-IPDS F protein
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; human metapneumovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-07-01
Authors: Ghazi Esfahani, N., Mousa, J., Khalil, A.M.
PDB entry 9pe0: CryoEM structure of the GSDME pore, C27
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2025-07-01
Authors: Teran, E., Ni, D.C., Wang, C.W., Ruan, J.B.
PDB entry 9pe1: Structure of beta-1,3-glucan synthase in complex with caspofungin, Rho1 and long glucan
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-07-01
Authors: Ren, Z., Lee, S.Y.
PDB entry 9pe2: Structure of beta-1,3-glucan synthase from Saccharomyces cerevisiae (ScFks1) in complex with short glucan
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-07-01
Authors: Ren, Z., Lee, S.Y.
PDB entry 9pe3: Structure of beta-1,3-glucan synthase from Saccharomyces cerevisiae (ScFks1) at the catalytically relevant ground state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-07-01
Authors: Ren, Z., Lee, S.Y.
PDB entry 9pe4: Structure of beta-1,3-glucan synthase from Saccharomyces cerevisiae (ScFks1) at the catalytically less relevant L2 state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-07-01
Authors: Ren, Z., Lee, S.Y.
PDB entry 9pe5: Structure of beta-1,3-glucan synthase from Saccharomyces cerevisiae (ScFks1) at the catalytically less relevant L1 state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-07-01
Authors: Ren, Z., Lee, S.Y.
PDB entry 9pe7: CDK6 to CDK4 active site surrogate in complex with compound 6
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-07-01
Authors: Johnson, E., Chen, P.
PDB entry 9pe8: CDK6 to CDK4 active site surrogate in complex with PF-07220060
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-07-01
Authors: Johnson, E., Chen, P.
PDB entry 9pe9: GSK3beta in complex with compound 6
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-07-01
Authors: Johnson, E., Chen, P.
PDB entry 9peb: Cryo-EM structure of Arabidopsis thaliana Met1
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-07-01
Authors: Lu, J., Chen, X., Song, J.
PDB entry 9pec: Cryo-EM structure of Arabidopsis thaliana Met1 (RFTS free)
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-07-02
Authors: Lu, J., Chen, X., Song, J.
PDB entry 9ped: Cryo-EM structure of Arabidopsis thaliana Met1 in complex with DNA
Classification: TRANSFERASE/DNA
Source organism: Arabidopsis thaliana; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-07-02
Authors: Lu, J., Chen, X., Song, J.
PDB entry 9pee: Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2025-07-02
Authors: Wasilko, D.J., Wu, H.
PDB entry 9peo: Structure of the S. cerevisiae clamp loader Replication Factor C (RFC) with mixed nucleotide occupancy
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2025-07-02
Authors: Pajak, J., Kelch, B.A.
PDB entry 9pep: Crystal structure of holo-pvspha
Classification: BIOSYNTHETIC PROTEIN
Source organism: Paecilomyces variotii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-07-02
Authors: Hai, Y., He, X.
PDB entry 9per: Structure of the S. cerevisiae clamp loader Replication Factor C (RFC) with mixed nucleotide occupancy
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2025-07-02
Authors: Pajak, J., Kelch, B.A.
PDB entry 9pes: Structure of the S. cerevisiae clamp loader Replication Factor C (RFC) with mixed nucleotide occupancy
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-07-02
Authors: Pajak, J., Kelch, B.A.
PDB entry 9pet: Structure of the S. cerevisiae clamp loader Replication Factor C (RFC) with mixed nucleotide occupancy
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2025-07-02
Authors: Pajak, J., Kelch, B.A.
PDB entry 9peu: Structure of the S. cerevisiae clamp loader Replication Factor C (RFC) with mixed nucleotide occupancy
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-07-02
Authors: Pajak, J., Kelch, B.A.
PDB entry 9pev: Structure of the S. cerevisiae clamp loader Replication Factor C (RFC) with mixed nucleotide occupancy
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2025-07-02
Authors: Pajak, J., Kelch, B.A.
PDB entry 9pf1: Nub1/Fat10-processing human 26S proteasome with Rpt4 at top of spiral staircase (AAA+ motor locally refined)
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2025-07-03
Authors: Arkinson, C., Gee, C.L., Martin, A.
PDB entry 9pf2: NSF, substrate free, hydrolyzing, class 25
Classification: HYDROLASE
Source organism: Cricetulus griseus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.88 Å
Deposited: 2025-07-03
Authors: White, K.I., Brunger, A.T.
PDB entry 9pf3: Crystal structure of the glycosyltransferase QsFucT from Quillaja saponaria
Classification: TRANSFERASE
Source organism: Quillaja saponaria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2025-07-03
Authors: Pereira, J.H., Hudson, G.A., Keasling, J.D., Adams, P.D.
PDB entry 9pf5: [A4J] Asymmetric tensegrity triangle with a 4 nucleotide single stranded region adjacent to the junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.62 Å
Deposited: 2025-07-03
Authors: Horvath, A., Wang, M., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pf6: [A4M] Asymmetric tensegrity triangle with a 4 nucleotide single stranded region on one side
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.83 Å
Deposited: 2025-07-03
Authors: Horvath, A., Wang, M., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pf7: [A1M] Asymmetric tensegrity triangle with a 1 nucleotide single stranded region on one side
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.59 Å
Deposited: 2025-07-03
Authors: Horvath, A., Wang, M., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pf8: [A1J] Asymmetric tensegrity triangle with a 1 nucleotide single stranded region adjacent to the junction
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.1 Å
Deposited: 2025-07-03
Authors: Horvath, A., Wang, M., Woloszyn, K., Vecchioni, S., Ohayon, Y.P., Sha, R.
PDB entry 9pf9: X-ray crystal structure of ATX-350-2 Fab bound to Epstein-Barr virus glycoprotein 350
Classification: IMMUNE SYSTEM
Source organism: human gammaherpesvirus 4; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.93 Å
Deposited: 2025-07-03
Authors: Lang, K., Kher, G., Aldridge, N.T., Pancera, M.
PDB entry 9pfa: Crystal structure of the glycosyltransferase SvFucT from Saponaria vaccaria
Classification: TRANSFERASE
Source organism: Gypsophila vaccaria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-07-03
Authors: Pereira, J.H., Hudson, G.A., Keasling, J.D., Adams, P.D.
PDB entry 9pfb: Human OCTN2 bound to ipratropium in an inward-facing conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-07-03
Authors: Davies, J.S., Zeng, Y.Z., Stewart, A.G.
PDB entry 9pfc: NSF, substrate free, hydrolyzing, class 26
Classification: HYDROLASE
Source organism: Cricetulus griseus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-07-03
Authors: White, K.I., Brunger, A.T.
PDB entry 9pfd: RMI1-RMI2 bound to synthetic peptide P4Ser
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.008 Å
Deposited: 2025-07-04
Authors: Bythell-Douglas, R., Lau, Y.H., Alcock, L.J., Deshpande, C.