LiteFold/PDB huggingface dataset:
PDB entry 8eq5: Crystal structure of the N-terminal kinase domain of RSK2 in complex with SPRED2 (131-160)
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-10-07
Authors: Bonsor, D.A., Lopez, J., McCormick, F., Simanshu, D.K.
PDB entry 8eq6: PD1 signaling receptor bound to FAB Complex
Classification: SIGNALING PROTEIN/Immune System
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-10-07
Authors: Bjorkelid, C., Paluch, C., Robertson, N.J.
PDB entry 8eq7: Co-crystal structure of Chaetomium glucosidase with compound 20
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2022-10-07
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8eq8: The crystal structure of 14-3-3 Beta containing 3-nitrotyrosine at position Y130
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-10-07
Authors: Zhu, P., Cooley, R.B.
PDB entry 8eq9: Co-crystal structure of PERK with compound 11
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2022-10-07
Authors: Zhu, G., Surman, M.D., Mulvihill, M.J.
PDB entry 8eqa: Crystal structure of human anti-N1 neuraminidase 2H08 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2022-10-07
Authors: Zhu, X., Wilson, I.A.
PDB entry 8eqb: FAM46C/BCCIPalpha/Nanobody complex
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2022-10-07
Authors: Liu, S., Chen, H., Yin, Y., Bai, X., Zhang, X.
PDB entry 8eqc: Crystal structure of human anti-N1 neuraminidase 3H03 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-07
Authors: Zhu, X., Wilson, I.A.
PDB entry 8eqd: Co-crystal structure of PERK with compound 24
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2022-10-07
Authors: Zhu, G., Surman, M.D., Mulvihill, M.J.
PDB entry 8eqe: Co-crystal structure of PERK with compound 26
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.559 Å
Deposited: 2022-10-07
Authors: Zhu, G., Surman, M.D., Mulvihill, M.J.
PDB entry 8eqf: cryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody STI-9167
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2022-10-07
Authors: Bajic, G.
PDB entry 8eqg: Human PU.1 ETS-Domain (165-270) Bound to d(AATAAA(DU)GGAAGTGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-10-07
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8eqh: The crystal structure of 14-3-3 Beta containing 3-nitrotyrosine at position Y213
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-10-07
Authors: Zhu, P., Cooley, R.B.
PDB entry 8eqi: Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with cyclopeptide des4.2.0
Classification: HYDROLASE/INHIBITOR
Source organism: Danio rerio; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-10-07
Authors: Watson, P.R., Christianson, D.W.
PDB entry 8eqj: Structure of SARS-CoV-2 Orf3a in late endosome/lysosome-like membrane environment, MSP1D1 nanodisc
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-10-07
Authors: Miller, A.N., Houlihan, P.R., Matamala, E., Cabezas-Bratesco, D., Lee, G.Y., Cristofori-Armstrong, B., Dilan, T.L., Sanchez-Martinez, S., Matthies, D., Yan, R., Yu, Z., Ren, D., Brauchi, S.E., Clapham, D.E.
PDB entry 8eqk: Human PU.1 ETS-Domain (165-270) Bound to d(AATAACCGGAAGTGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-10-07
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8eql: Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAACCGGAAGTGGG)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2022-10-07
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 8eqm: Structure of a dimeric photosystem II complex acclimated to far-red light
Classification: PHOTOSYNTHESIS
Source organism: Synechococcus sp. PCC 7335
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-10-08
Authors: Gisriel, C.J., Shen, G., Flesher, D.A., Kurashov, V., Golbeck, J.H., Brudvig, G.W., Amin, M., Bryant, D.A.
PDB entry 8eqn: BG505 UFO-E2p-L4P nanoparticle reconstructed by focused refinement with a mask around the nanoparticle core
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-10-08
Authors: Antanasijevic, A., Zhang, Y.N., Zhu, J., Ward, A.B.
PDB entry 8eqo: Crystal structure of E.coli DsbA mutant K58A
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2022-10-08
Authors: Wang, G., Heras, B.
PDB entry 8eqp: Crystal structure of E.coli DsbA mutant E24A/E37A/K58A
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-10-09
Authors: Wang, G., Heras, B.
PDB entry 8eqq: Crystal structure of E.coli DsbA mutant E37A
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2022-10-09
Authors: Wang, G., Heras, B.
PDB entry 8eqr: Crystal structure of E.coli DsbA mutant E24A
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-10-09
Authors: Wang, G., Heras, B.
PDB entry 8eqs: Structure of SARS-CoV-1 Orf3a in late endosome/lysosome-like environment, MSP1D1 nanodisc
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-09
Authors: Miller, A.N., Houlihan, P.R., Matamala, E., Cabezas-Bratesco, D., Lee, G.Y., Cristofori-Armstrong, B., Dilan, T.L., Sanchez-Martinez, S., Matthies, D., Yan, R., Yu, Z., Ren, D., Brauchi, S.E., Clapham, D.E.
PDB entry 8eqt: Structure of SARS-CoV-2 Orf3a in plasma membrane-like environment, MSP1D1 nanodisc
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-10-09
Authors: Miller, A.N., Houlihan, P.R., Matamala, E., Cabezas-Bratesco, D., Lee, G.Y., Cristofori-Armstrong, B., Dilan, T.L., Sanchez-Martinez, S., Matthies, D., Yan, R., Yu, Z., Ren, D., Brauchi, S.E., Clapham, D.E.
PDB entry 8equ: Structure of SARS-CoV-2 Orf3a in late endosome/lysosome-like environment, Saposin A nanodisc
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-10-09
Authors: Miller, A.N., Houlihan, P.R., Matamala, E., Cabezas-Bratesco, D., Lee, G.Y., Cristofori-Armstrong, B., Dilan, T.L., Sanchez-Martinez, S., Matthies, D., Yan, R., Yu, Z., Ren, D., Brauchi, S.E., Clapham, D.E.
PDB entry 8eqv: Cryo-EM structure of PRC2 in complex with the long isoform of AEBP2
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2022-10-09
Authors: Boudes, M., Zhang, Q., Flanigan, S.F., Davidovich, C.
PDB entry 8eqw: Crystal structure of Fub7
Classification: BIOSYNTHETIC PROTEIN
Source organism: Fusarium fujikuroi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2022-10-10
Authors: Hai, Y.
PDB entry 8eqx: Co-crystal structure of Chaetomium glucosidase with compound 21
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-10-10
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8eqz: Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog T0-C6
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2022-10-11
Authors: Huber, A.D., Poudel, S., Seetharaman, J., Miller, D.J., Lin, W., Li, Y., Chen, T.
PDB entry 8er0: X-ray crystal structure of Tet(X6) bound to anhydrotetracycline
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Chryseobacterium oncorhynchi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-10-11
Authors: Kumar, H., Tolia, N.H.
PDB entry 8er1: X-ray crystal structure of Tet(X6)
Classification: OXIDOREDUCTASE
Source organism: Chryseobacterium oncorhynchi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-10-11
Authors: Kumar, H., Tolia, N.H.
PDB entry 8er4: Co-crystal structure of Chaetomium glucosidase with compound 23
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-10-11
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8er5: Crystal Structure of NlpC/P60 domain from Clostridium innocuum NlpC/P60 domain-containing protein CI_01448.
Classification: HYDROLASE
Source organism: [Clostridium] innocuum 2959
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2022-10-11
Authors: Minasov, G., Shuvalova, L., Dubrovska, I., Wiersum, G., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 8er6: FKBP12-FRB in Complex with Compound 11
Classification: COMPLEX (ISOMERASE/KINASE)
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2022-10-11
Authors: Tomlinson, A.C.A., Yano, J.K.
PDB entry 8er7: FKBP12-FRB in Complex with Compound 12
Classification: COMPLEX (ISOMERASE/KINASE)
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2022-10-11
Authors: Tomlinson, A.C.A., Yano, J.K.
PDB entry 8er8: Acheta domesticus segmented densovirus, mature virion capsid structure
Classification: VIRUS/DNA
Source organism: unclassified Densovirinae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2022-10-11
Authors: Penzes, J.J., McKenna, R., Tijssen, P.
PDB entry 8era: RMC-5552 in complex with mTORC1 and FKBP12
Classification: COMPLEX (ISOMERASE/KINASE)
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2022-10-11
Authors: Tomlinson, A.C.A., Yano, J.K.
PDB entry 8erb: Crystal structure of Fub7 in complex with vinylglycine ketimine
Classification: BIOSYNTHETIC PROTEIN
Source organism: Fusarium fujikuroi
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-10-11
Authors: Hai, Y.
PDB entry 8erc: Human Membrane-bound O-acyltransferase 7
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-10-11
Authors: Wang, K., Liao, M., Farese, R.V., Walther, T.C.
PDB entry 8erd: Cyclin-free CDK2 in complex with Cpd17
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2022-10-11
Authors: Murray, J.M., Oh, A.
PDB entry 8ere: HTLV-1 capsid protein N-terminal domain triclinic crystal form
Classification: VIRAL PROTEIN
Source organism: HTLV-1 subtype C
Experimental method: X-RAY DIFFRACTION
Resolution: 0.87 Å
Deposited: 2022-10-11
Authors: Yu, R.J., Li, N., Jacques, D.A.
PDB entry 8erf: HTLV-1 capsid protein N-terminal domain orthorhombic crystal form
Classification: VIRAL PROTEIN
Source organism: HTLV-1 subtype C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-10-11
Authors: Yu, R.J., Li, N., Jacques, D.A.
PDB entry 8erg: HTLV-1 capsid protein N-terminal domain hexagonal crystal form
Classification: VIRAL PROTEIN
Source organism: HTLV-1 subtype C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-10-11
Authors: Yu, R.J., Li, N., Jacques, D.A.
PDB entry 8erh: HTLV-1 capsid protein C-terminal domain
Classification: VIRAL PROTEIN
Source organism: HTLV-1 subtype C
Experimental method: X-RAY DIFFRACTION
Resolution: 1.47 Å
Deposited: 2022-10-11
Authors: Yu, R.J., Li, N., Jacques, D.A.
PDB entry 8eri: HTLV-1 capsid protein full-length
Classification: VIRAL PROTEIN
Source organism: HTLV-1 subtype C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-10-11
Authors: Yu, R.J., Li, N., Jacques, D.A.
PDB entry 8erj: Crystal structure of Fub7 in complex with E-2-aminocrotonate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Fusarium fujikuroi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2022-10-12
Authors: Hai, Y.
PDB entry 8erk: Acheta domesticus segmented densovirus, high buoyancy (HB) capsid, a mixed population of empty and immature full particles
Classification: VIRUS
Source organism: unclassified Densovirinae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-10-12
Authors: Penzes, J.J., McKenna, R., Tijssen, P.
PDB entry 8erl: CryoEM Structure of Lipoprotein Lipase Dimer
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-10-12
Authors: Gunn, K.H., Neher, S.B.
PDB entry 8erm: Crystal structure of FliC D2/D3 domains from Pseudomonas aeruginosa PAO1
Classification: CELL ADHESION
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.475 Å
Deposited: 2022-10-12
Authors: Nedeljkovic, M., Bonsor, D.A., Postel, S., Sundberg, E.J.
PDB entry 8ern: Cyclin-free CDK2 in complex with Cpd21
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2022-10-12
Authors: Murray, J.M., Oh, A.
PDB entry 8ero: Structure of Xenopus cholinephosphotransferase1 in complex with CDP
Classification: TRANSFERASE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-12
Authors: Wang, L., Zhou, M.
PDB entry 8erp: Structure of Xenopus cholinephosphotransferase1 in complex with CDP-choline
Classification: TRANSFERASE
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-10-12
Authors: Wang, L., Zhou, M.
PDB entry 8erq: SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-10-12
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 8err: SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-12
Authors: Park, Y.J., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 8ers: PanDDA analysis -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z4718398507 - (R,S) isomer
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.05 Å
Deposited: 2022-10-12
Authors: Correy, G.J., Fraser, J.S.
PDB entry 8ert: NLRP3 PYD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-10-12
Authors: Wu, H., Xiao, L.
PDB entry 8eru: Solution NMR structure of a computationally designed mastoparan-like peptide, mastoparan-R4
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-10-12
Authors: Freitas, C.D.P., Oshiro, K.G.N., Macedo, M.L.R., Cardoso, M.H., Franco, O.L., Liao, L.M.
PDB entry 8erw: Precisely patterned nanofibers made from extendable protein multiplexes
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2022-10-12
Authors: Bick, M.J., Parmeggiani, F., Bethel, N.P., Sankaran, B., Baker, D.
PDB entry 8erx: Structure of chimeric HLA-A*11:01-A*02:01 bound to HIV-1 RT peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2022-10-13
Authors: Florio, T.J., Ani, O., Young, M.C., Mallik, L., Sgourakis, N.G.
PDB entry 8ery: Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: Asp10Asn11 turn
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-10-13
Authors: Harmon, T.W., Horne, W.S.
PDB entry 8erz: Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: Aib10Gly11 turn
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-10-13
Authors: Harmon, T.W., Horne, W.S.
PDB entry 8es0: Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: DPro10Gly11 turn
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-10-13
Authors: Harmon, T.W., Horne, W.S.
PDB entry 8es1: Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: deltaOrn10-11 turn
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-10-13
Authors: Harmon, T.W., Horne, W.S.
PDB entry 8es2: Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: Aib10Asn11 turn
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-10-13
Authors: Harmon, T.W., Horne, W.S.
PDB entry 8es3: Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: DPro10Pro11 turn
Classification: DE NOVO PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2022-10-13
Authors: Harmon, T.W., Horne, W.S.
PDB entry 8es4: Focused reconstruction of HRP29 tail
Classification: VIRUS
Source organism: Shigella phage Buco
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-10-13
Authors: Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
PDB entry 8es5: Aha1 domain protein from Pseudomonas aeruginosa
Classification: UNKNOWN FUNCTION
Source organism: Pseudomonas aeruginosa PA14
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2022-10-13
Authors: Colautti, J., Whitney, J.C.
PDB entry 8es6: Crystal structure of an unusual amidase ClbL from colibactin gene cluster
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-10-13
Authors: Tripathi, P., Bruner, S.D.
PDB entry 8es7: CryoEM structure of PN45545 TCR-CD3 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-10-13
Authors: Saotome, K., Franklin, M.C.
PDB entry 8es8: CryoEM structure of PN45545 TCR-CD3 in complex with HLA-A2 MAGEA4 (230-239)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2022-10-13
Authors: Saotome, K., Franklin, M.C.
PDB entry 8es9: CryoEM structure of PN45428 TCR-CD3 in complex with HLA-A2 MAGEA4
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-10-13
Authors: Saotome, K., Franklin, M.C.
PDB entry 8esa: CryoEM structure of HLA-A2 bound to MAGEA4 (230-239) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-10-13
Authors: Saotome, K., Franklin, M.C.
PDB entry 8esb: CryoEM structure of HLA-A2 bound to MAGEA8 (232-241) peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2022-10-13
Authors: Saotome, K., Franklin, M.C.
PDB entry 8esc: Structure of the Yeast NuA4 Histone Acetyltransferase Complex
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-13
Authors: Patel, A.B., Zukin, S.A., Nogales, E.
PDB entry 8esd: Crystal structure of COMMD7-COMMD9-COMMD5-COMMD10 tetramer
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.33 Å
Deposited: 2022-10-13
Authors: Healy, M.D., Collins, B.M.
PDB entry 8ese: Crystal structure of human Vps29 bound to a peptide from Vps35L
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-10-13
Authors: Healy, M.D., Collins, B.M.
PDB entry 8esf: Crystal structure of human Nischarin PX and LRR domains with engineered mutations
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2022-10-13
Authors: Eldershaw, D.E., Collins, B.M.
PDB entry 8esg: Bile Salt Hydrolase B from Lactobacillus gasseri with covalent inhibitor bound
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Lactobacillus gasseri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2022-10-14
Authors: Walker, M.E., Redinbo, M.R.
PDB entry 8esh: Structure of chimeric HLA-A*02:01 bound to CMV peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2022-10-14
Authors: Florio, T.J., Ani, O., Young, M.C., Mallik, L., Sgourakis, N.G.
PDB entry 8esi: Bile Salt Hydrolase from B. longum with covalent inhibitor bound
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-10-14
Authors: Walker, M.E., Lim, L., Redinbo, M.R.
PDB entry 8esk: Cryo-EM structure of Torpedo nicotinic acetylcholine receptor in complex with rocuronium, resting-like state
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Tetronarce californica
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2022-10-14
Authors: Goswami, U., Rahman, M.M., Teng, J., Hibbs, R.E.
PDB entry 8esl: Bile Salt Hydrolase from a Bacteroidales species with covalent inhibitor bound
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bacteroidales
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2022-10-14
Authors: Walker, M.E., Redinbo, M.R.
PDB entry 8esm: Human triacylglycerol synthesizing enzyme DGAT1 in complex with T863 inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-14
Authors: Sui, X., Kun, W., Walther, T., Farese, R., Liao, M.
PDB entry 8esq: Ytm1 associated nascent 60S ribosome State 2
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-10-14
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8esr: Ytm1 associated nascent 60S ribosome (-fkbp39) State 2
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-14
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8ess: Myoglobin variant Mb-cIII complex
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-10-14
Authors: Bacik, J.P., Fasan, R., Ando, N.
PDB entry 8est: REACTION OF PORCINE PANCREATIC ELASTASE WITH 7-SUBSTITUTED 3-ALKOXY-4-CHLOROISOCOUMARINS: DESIGN OF POTENT INHIBITORS USING THE CRYSTAL STRUCTURE OF THE COMPLEX FORMED WITH 4-CHLORO-3-ETHOXY-7-GUANIDINO-ISOCOUMARIN
Classification: HYDROLASE(SERINE PROTEINASE)
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 1990-02-21
Authors: Radhakrishnan, R., Powers, J.C., Meyerjunior, E.F.
PDB entry 8esu: Myoglobin variant Mb-imi complex
Classification: OXYGEN STORAGE
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.04 Å
Deposited: 2022-10-14
Authors: Bacik, J.P., Fasan, R., Ando, N.
PDB entry 8esv: Structure of human ADAM10-Tspan15 complex bound to 11G2 vFab
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-10-14
Authors: Lipper, C.H., Blacklow, S.C.
PDB entry 8esw: Structure of mitochondrial complex I from Drosophila melanogaster, Flexible-class 1
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-10-15
Authors: Padavannil, A., Letts, J.A.
PDB entry 8esx: HIV protease in complex with benzoxaborolone analog of darunavir
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-10-15
Authors: Windsor, I.W., Graham, B.J., Raines, R.T.
PDB entry 8esy: D30N mutant HIV protease in complex with benzoxaborolone analog of darunavir
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-10-15
Authors: Windsor, I.W., Graham, B.J., Raines, R.T.
PDB entry 8esz: Structure of mitochondrial complex I from Drosophila melanogaster, Helix-locked state
Classification: OXIDOREDUCTASE
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-10-15
Authors: Padavannil, A., Letts, J.A.
PDB entry 8et0: Crystal Complex of murine Cyclooxygenase-2 with alpaca nanobody F9
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-10-15
Authors: Xu, S., Banerjee, S., Uddin, M.J., Goodman, M.C., Marnett, L.J.
PDB entry 8et1: CryoEM structure of GSDMB pore without transmembrane beta-barrel
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.48 Å
Deposited: 2022-10-15
Authors: Wang, C., Ruan, J.
PDB entry 8et2: CryoEM structure of the GSDMB pore
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.96 Å
Deposited: 2022-10-15
Authors: Wang, C., Ruan, J.
PDB entry 8et3: Cryo-EM structure of a delivery complex containing the SspB adaptor, an ssrA-tagged substrate, and the AAA+ ClpXP protease
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-10-16
Authors: Ghanbarpour, A., Fei, X., Davis, J.H., Sauer, R.T.
PDB entry 8et4: Crystal structure of wild-type arabidopsis thaliana acetohydroxyacid synthase in complex with amidosulfuron
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2022-10-16
Authors: Guddat, L.W., Cheng, Y.
PDB entry 8et5: Crystal structure of arabidopsis thaliana acetohydroxyacid synthase S653T mutant in complex with amidosulfuron
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2022-10-16
Authors: Guddat, L.W., Cheng, Y.
PDB entry 8et6: Cryo-EM structure of the organic cation transporter 1 in the apo state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2022-10-16
Authors: Suo, Y., Wright, N.J., Lee, S.-Y.
PDB entry 8et7: Cryo-EM structure of the organic cation transporter 1 in complex with diphenhydramine
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2022-10-16
Authors: Suo, Y., Wright, N.J., Lee, S.-Y.
PDB entry 8et8: Cryo-EM structure of the organic cation transporter 1 in complex with verapamil
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2022-10-16
Authors: Suo, Y., Wright, N.J., Lee, S.-Y.
PDB entry 8et9: Cryo-EM structure of the organic cation transporter 2 in complex with 1-methyl-4-phenylpyridinium
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2022-10-16
Authors: Suo, Y., Wright, N.J., Lee, S.-Y.
PDB entry 8etb: the crystal structure of a rationally designed zinc sensor based on maltose binding protein - Zn binding conformation
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2022-10-16
Authors: Zhao, Z., Zhou, M., Zemerov, S.D., Marmorstein, R., Dmochowski, I.J.
PDB entry 8etc: Fkbp39 associated nascent 60S ribosome State 4
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-16
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8etd: Crystal Structure of Schizosaccharomyces pombe Rho1
Classification: GENE REGULATION
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2022-10-16
Authors: Huang, Q., Xie, J., Seetharaman, J.
PDB entry 8ete: Bile Salt Hydrolase from B. longum with covalent inhibitor bound
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-10-17
Authors: Walker, M.E., Redinbo, M.R.
PDB entry 8etf: Bile Salt Hydrolase B from Lactobacillus gasseri with covalent inhibitor bound
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Lactobacillus gasseri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2022-10-17
Authors: Walker, M.E., Redinbo, M.R.
PDB entry 8etg: Fkbp39 associated 60S nascent ribosome State 3
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-10-17
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8eth: Ytm1 associated 60S nascent ribosome State 1B
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2022-10-17
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8eti: Fkbp39 associated 60S nascent ribosome State 1
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-10-17
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8etj: Fkbp39 associated 60S nascent ribosome State 2
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-17
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8etk: Bile salt hydrolase A from Lactobacillus gasseri bound to covalent probe
Classification: HYDROLASE
Source organism: Lactobacillus gasseri
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2022-10-17
Authors: Walker, M.E., Grundy, M.K., Redinbo, M.R.
PDB entry 8etl: Co-crystal structure of Chaetomium glucosidase with compound 24
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-10-17
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8etm: Human triacylglycerol synthesizing enzyme DGAT1 in complex with DGAT1IN1 inhibitor
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-10-17
Authors: Sui, X., Kun, W., Walther, T., Farese, R., Liao, M.
PDB entry 8etn: The X-ray Crystal Structure of Tri-Ketone Dioxygenase from Rice
Classification: OXIDOREDUCTASE
Source organism: Oryza sativa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2022-10-17
Authors: Rydel, T.J., Duda, D., Zheng, M., Duff, S.M.G.
PDB entry 8eto: Co-crystal structure of Chaetomium glucosidase with compound 25
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-10-17
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8etp: Cryo-EM structure of cGMP bound closed state of human CNGA3/CNGB3 channel in GDN
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-10-17
Authors: Hu, Z., Zheng, X., Yang, J.
PDB entry 8etq: Designed pentafoil knot protein folded into a trefoil knot
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-10-17
Authors: Doyle, L.A., Kibler, R.D., Bradley, P., Stoddard, B.L.
PDB entry 8etr: CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-10-17
Authors: Murray, J.M., Johnson, M.C.
PDB entry 8ets: Class1 of the INO80-Hexasome complex
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2022-10-17
Authors: Wu, H., Munoz, E., Gourdet, M., Cheng, Y.F., Narlikar, G.
PDB entry 8ett: Class1 of the INO80-Hexasome complex
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.68 Å
Deposited: 2022-10-17
Authors: Wu, H., Munoz, E., Gourdet, M., Cheng, Y.F., Narlikar, G.
PDB entry 8etu: Class2 of the INO80-Hexasome complex
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-10-17
Authors: Wu, H., Munoz, E., Gourdet, M., Cheng, Y.F., Narlikar, G.
PDB entry 8etv: Class2 of the INO80-Hexasome complex
Classification: MOTOR PROTEIN/DNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2022-10-17
Authors: Wu, H., Munoz, E., Gourdet, M., Cheng, Y.F., Narlikar, G.
PDB entry 8etw: Class3 of INO80-Hexasome complex
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2022-10-17
Authors: Wu, H., Munoz, E., Gourdet, M., Narlikar, G., Cheng, Y.F.
PDB entry 8etx: Ancestral PETase 55_547
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-10-18
Authors: Saunders, J.W., Frkic, R.L., Jackson, C.J.
PDB entry 8ety: Ancestral PETase 35_442
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2022-10-18
Authors: Saunders, J.W., Frkic, R.L., Jackson, C.J.
PDB entry 8etz: Ancestral PETase 35_442 Mutant E13D
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2022-10-18
Authors: Saunders, J.W., Frkic, R.L., Jackson, C.J.
PDB entry 8eu0: Ancestral PETase 35_442 Mutant E27Q
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-10-18
Authors: Saunders, J.W., Frkic, R.L., Jackson, C.J.
PDB entry 8eu1: Ancestral PETase 35_442 Mutant F93L
Classification: HYDROLASE
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2022-10-18
Authors: Saunders, J.W., Frkic, R.L., Jackson, C.J.
PDB entry 8eu2: Class3 of the INO80-Hexasome complex
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2022-10-18
Authors: Wu, H., Munoz, E., Gourdet, M., Cheng, Y.F., Narlikar, G.
PDB entry 8eu3: Cryo-EM structure of cGMP bound human CNGA3/CNGB3 channel in GDN, transition state 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2022-10-18
Authors: Hu, Z., Zheng, X., Yang, J.
PDB entry 8eu4: Escherichia coli pyruvate kinase A301S
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-10-18
Authors: Donovan, K.A., Coombes, D., Dobson, R.C.J., Cooper, T.F.
PDB entry 8eu5: Acheta domesticus segmented densovirus high buoyancy fraction 2 empty capsid structure
Classification: VIRUS LIKE PARTICLE
Source organism: Solenopsis invicta-associated densovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-18
Authors: Penzes, J.J., McKenna, R., Tijssen, P.
PDB entry 8eu6: Acheta domesticus segmented densovirus high buoyancy fraction 1 (HB1) empty capsid structure
Classification: VIRUS LIKE PARTICLE
Source organism: Solenopsis invicta-associated densovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-10-18
Authors: Penzes, J.J., McKenna, R., Tijssen, P.
PDB entry 8eu7: Acheta domesticus segmented densovirus VP-ORF1 virus-like particle
Classification: VIRUS LIKE PARTICLE
Source organism: Solenopsis invicta-associated densovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-10-18
Authors: Penzes, J.J., McKenna, R., Tijssen, P.
PDB entry 8eu8: Cryo-EM structure of CH848 10.17DT DS-SOSIP-2P Env
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.73 Å
Deposited: 2022-10-18
Authors: Wrapp, D., Acharya, P., Haynes, B.F.
PDB entry 8eu9: Class1 of the INO80-Nucleosome complex
Classification: DNA BINDING PROTEIN/Hydrolase
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-10-18
Authors: Wu, H., Munoz, E., Gourdet, M., Cheng, Y.F., Narlikar, G.
PDB entry 8eua: Structure of SARS-CoV2 PLpro bound to a covalent inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-10-18
Authors: Mathews, I.I., Pokhrel, S., Wakatsuki, S.
PDB entry 8eub: Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.52 Å
Deposited: 2022-10-18
Authors: Zhao, Y., Rai, J., Li, H.
PDB entry 8euc: Cryo-EM structure of cGMP bound human CNGA3/CNGB3 channel in GDN, transition state 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2022-10-18
Authors: Hu, Z., Zheng, X., Yang, J.
PDB entry 8eud: Co-crystal structure of Chaetomium glucosidase with compound 22
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2022-10-18
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8eue: Class1 of the INO80-Nucleosome complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Xenopus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2022-10-18
Authors: Wu, H., Munoz, E., Gourdet, M., Narlikar, G., Cheng, Y.F.
PDB entry 8euf: Class2 of the INO80-Nucleosome complex
Classification: DNA BINDING PROTEIN/Hydrolase
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2022-10-18
Authors: Wu, H., Munoz, E., Gourdet, M., Narlikar, G., Cheng, Y.F.
PDB entry 8eug: Ytm1 associated nascent 60S ribosome State 3
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-10-18
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8euh: cytochrome P450terp (cyp108A1) bound to alpha-terpineol
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-10-18
Authors: Gable, J.A., Follmer, A.H., Poulos, T.L.
PDB entry 8eui: Ytm1 associated nascent 60S ribosome (-fkbp39) State 3
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-18
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8euj: Class2 of the INO80-Nucleosome complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Xenopus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-10-18
Authors: Wu, H., Munoz, E., Gourdet, M., Narlikar, G., Cheng, Y.F.
PDB entry 8euk: cytochrome P450terp (cyp108A1) bound to ethylene glycol
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-10-18
Authors: Gable, J.A., Follmer, A.H., Poulos, T.L.
PDB entry 8eul: cytochrome P450terp (cyp108A1) mutant F188A bound to alpha-terpineol
Classification: OXIDOREDUCTASE
Source organism: Pseudomonas sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2022-10-18
Authors: Gable, J.A., Follmer, A.H., Poulos, T.L.
PDB entry 8eum: MicroED structure of an Aeropyrum pernix protoglobin mutant
Classification: METAL BINDING PROTEIN
Source organism: Aeropyrum pernix
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.1 Å
Deposited: 2022-10-18
Authors: Danelius, E., Gonen, T., Unge, J.T.
PDB entry 8eun: MicroED structure of an Aeropyrum pernix protoglobin metallo-carbene complex
Classification: METAL BINDING PROTEIN
Source organism: Aeropyrum pernix
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2022-10-19
Authors: Danelius, E., Gonen, T., Unge, J.T.
PDB entry 8euo: Hydroxynitrile Lyase from Hevea brasiliensis with Seven Mutations
Classification: LYASE
Source organism: Hevea brasiliensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-10-19
Authors: Greenberg, L.R., Walsh, M.E., Kazlauskas, R.J., Pierce, C.T., Shi, K., Aihara, H., Evans, R.L.
PDB entry 8eup: Ytm1 associated 60S nascent ribosome State 1A
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-10-19
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8euq: Crystal structure of HLA-DRA*01:01/HLA-DRB1*04:01 in complex with c44H10 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2022-10-19
Authors: Kassardjian, A., Julien, J.-P.
PDB entry 8eur: Co-crystal structure of Chaetomium glucosidase with compound 26
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2022-10-19
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8eus: Crystal structure of NPC1 luminal domain C
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-10-19
Authors: Odongo, L., Pornillos, O.
PDB entry 8eut: Co-crystal structure of Chaetomium glucosidase with compound 27
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-10-19
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8euu: Cryo-EM structure of HIV-1 BG505 DS-SOSIP ENV trimer bound to VRC34.01 FAB
Classification: VIRAL PROTEIN/ IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-10-19
Authors: Pletnev, S., Kwong, P.
PDB entry 8euv: Cryo-EM structure of HIV-1 BG505 DS-SOSIP ENV trimer bound to VRC34.01-COMBO1 FAB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2022-10-19
Authors: Pletnev, S., Kwong, P.
PDB entry 8euw: Cryo-EM structure of HIV-1 BG505 DS-SOSIP ENV trimer bound to VRC34.01-MM28 FAB
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-10-19
Authors: Pletnev, S., Kwong, P.
PDB entry 8eux: Co-crystal structure of Chaetomium glucosidase with compound 28
Classification: HYDROLASE/INHIBITOR
Source organism: Thermochaetoides thermophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2022-10-19
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 8euy: Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-10-19
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8ev1: Dual Modulators
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2022-10-19
Authors: Tinivella, A., Nwachukwu, J.C., Angeli, A., Foschi, F., Benatti, A.L., Pinzi, L., Izard, T., Ferraroni, M., Rangarajan, E.S., Christodoulou, M., Passarella, D., Supuran, C., Nettles, K.W., Rastelli, G.
PDB entry 8ev2: Dual Modulators
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2022-10-19
Authors: Tinivella, A., Nwachukwu, J.C., Angeli, A., Foschi, F., Benatti, A.L., Pinzi, L., Izard, T., Ferraroni, M., Rangarajan, E.S., Christodoulou, M., Passarella, D., Supuran, C., Nettles, K.W., Rastelli, G.
PDB entry 8ev3: Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B
Classification: RIBOSOME
Source organism: Schizosaccharomyces pombe
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-10-19
Authors: Zhou, X., Bilokapic, S., Deshmukh, A.A., Halic, M.
PDB entry 8ev4: NlpC B3 - Trichomonas Vaginalis
Classification: HYDROLASE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2022-10-19
Authors: Barnett, M.J., Goldstone, D.C.
PDB entry 8ev5: NlpC B3 covalently bound with E64 inhibitor fragment
Classification: HYDROLASE/Inhibitor
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-10-19
Authors: Barnett, M.J., Goldstone, D.C.