LiteFold/PDB huggingface dataset:
PDB entry 7tbm: Composite structure of the dilated human nuclear pore complex (NPC) generated with a 37A in situ cryo-ET map of CD4+ T cell NPC
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 37 Å
Deposited: 2021-12-22
Authors: Bley, C.J., Nie, S., Mobbs, G.W., Petrovic, S., Gres, A.T., Liu, X., Mukherjee, S., Harvey, S., Huber, F.M., Lin, D.H., Brown, B., Tang, A.W., Rundlet, E.J., Correia, A.R., Chen, S., Regmi, S.G., Stevens, T.A., Jette, C.A., Dasso, M., Patke, A., Palazzo, A.F., Kossiakoff, A.A., Hoelz, A.
PDB entry 7tbn: LOV2-DARPIN fusion : D11
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2021-12-22
Authors: Mittl, P.
PDB entry 7tbo: LOV2-DARPIN fusion : D12
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2021-12-22
Authors: Mittl, P.
PDB entry 7tbp: X-ray structure of the HIV-1 myristoylated matrix protein
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.151 Å
Deposited: 2021-12-22
Authors: Green, T.J., Saad, J.S., Samal, A.B.
PDB entry 7tbq: LOV2-DARPIN fusion : D7
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.678 Å
Deposited: 2021-12-22
Authors: Mittl, P.
PDB entry 7tbr: Crystal structure of the TPM domain from the Rhodothermus marinus protein Rhom172_1776
Classification: UNKNOWN FUNCTION
Source organism: Rhodothermus marinus SG0.5JP17-172
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2021-12-22
Authors: Pellizza, L., Klinke, S., Aran, M.
PDB entry 7tbs: Crystal Structure of the Glutaredoxin 2 from Francisella tularensis
Classification: TRANSPORT PROTEIN
Source organism: Francisella tularensis subsp. tularensis SCHU S4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2021-12-22
Authors: Kim, Y., Zhou, M., Grimshaw, S., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tbt: Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 13/14
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2021-12-22
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 7tbu: Crystal structure of the 5-enolpyruvate-shikimate-3-phosphate synthase (EPSPS) domain of Aro1 from Candida albicans in complex with shikimate-3-phosphate
Classification: TRANSFERASE
Source organism: Candida albicans Ca6
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-12-22
Authors: Stogios, P.J., Evdokimova, E., Michalska, K., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tbv: Crystal structure of the shikimate kinase + 3-dehydroquinate dehydratase + 3-dehydroshikimate dehydrogenase domains of Aro1 from Candida albicans
Classification: TRANSFERASE,OXIDOREDUCTASE
Source organism: Candida albicans Ca6
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2021-12-22
Authors: Stogios, P.J., Evdokimova, E., Michalska, K., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tbw: The structure of ATP-bound ABCA1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-12-22
Authors: Sun, Y., Li, X.
PDB entry 7tbx: Crystal structure of D179Y KPC-2 beta-lactamase
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å
Deposited: 2021-12-22
Authors: van den Akker, F., Alsenani, T.
PDB entry 7tby: The structure of human ABCA1 in nanodisc
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-12-22
Authors: Sun, Y., Li, X.
PDB entry 7tbz: The structure of ABCA1 Y482C
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2021-12-22
Authors: Sun, Y., Li, X.
PDB entry 7tc0: The structure of human ABCA1 in digitonin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2021-12-22
Authors: Sun, Y., Li, X.
PDB entry 7tc1: Crystal structure of D179N KPC-2 beta-lactamase in complex with vaborbactam
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.16 Å
Deposited: 2021-12-22
Authors: van den Akker, F., Alsenani, T.
PDB entry 7tc2: Human APE1 in complex with 5-nitroindole-2-carboxylic acid
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2021-12-22
Authors: Pidugu, L.S., Pozharski, E., Drohat, A.C.
PDB entry 7tc3: Human APE1 in the apo form
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.252 Å
Deposited: 2021-12-22
Authors: Pidugu, L.S., Pozharski, E., Drohat, A.C.
PDB entry 7tc4: Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 15/16
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2021-12-22
Authors: Shaqra, A.M., Schiffer, C.A.
PDB entry 7tc5: All Phe-Azurin variant - F15Y
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2021-12-22
Authors: Fedoretz-Maxwell, B.P., Worrall, L.J., Strynadka, N.C.J., Warren, J.J.
PDB entry 7tc6: All Phe-Azurin variant - F15W
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2021-12-22
Authors: Fedoretz-Maxwell, B.P., Worrall, L.J., Strynadka, N.C.J., Warren, J.J.
PDB entry 7tc7: Cryo-EM structure of methane monooxygenase hydroxylase (by quantifoil)
Classification: OXIDOREDUCTASE
Source organism: Methylococcus capsulatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2021-12-23
Authors: Cho, U.S., Kim, B.C.
PDB entry 7tc8: Cryo-EM structure of methane monooxygenase hydroxylase (by graphene)
Classification: OXIDOREDUCTASE
Source organism: Methylococcus capsulatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2021-12-23
Authors: Cho, U.S., Kim, B.C.
PDB entry 7tc9: Locally refined region of SARS-CoV-2 spike in complex with antibody A19-46.1
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.08 Å
Deposited: 2021-12-23
Authors: Zhou, T., Kwong, P.D.
PDB entry 7tca: Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibody A19-46.1
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.85 Å
Deposited: 2021-12-23
Authors: Zhou, T., Kwong, P.D.
PDB entry 7tcb: Crystal Structure of the YaeQ Family Protein VPA0551 from Vibrio parahaemolyticus
Classification: UNKNOWN FUNCTION
Source organism: Vibrio parahaemolyticus RIMD 2210633
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2021-12-23
Authors: Kim, Y., Mulligan, R., Maltseva, N., Gu, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tcc: Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibodies A19-46.1 and B1-182.1
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2021-12-23
Authors: Zhou, T., Kwong, P.D.
PDB entry 7tcd: LOV2-DARPIN fusion: D13
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2021-12-23
Authors: Mittl, P.
PDB entry 7tce: Crystal structure of delta sub IV Rhodobacter Sphaeroides bc1 with the antimalarial drug atovaquone.
Classification: OXIDOREDUCTASE
Source organism: Cereibacter sphaeroides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.85 Å
Deposited: 2021-12-23
Authors: Esser, L., Xia, D., Zhou, F.
PDB entry 7tcg: BceAB nucleotide-free conformation
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-12-23
Authors: George, N.L., Orlando, B.J.
PDB entry 7tch: BceAB E169Q variant ATP-bound conformation
Classification: TRANSPORT PROTEIN
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-12-23
Authors: George, N.L., Orlando, B.J.
PDB entry 7tci: Structure of Xenopus KCNQ1-CaM in complex with ML277
Classification: TRANSPORT PROTEIN/ACTIVATOR
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2021-12-23
Authors: Willegems, K., Kyriakis, E., Van Petegem, F., Eldstrom, J., Fedida, D.
PDB entry 7tcl: Crystal structure of P.IsnB complexed with tyrosine isonitrile
Classification: OXIDOREDUCTASE
Source organism: Photorhabdus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2021-12-26
Authors: Kim, W., Zhang, Y.
PDB entry 7tcm: Crystal Structure of aspartate-semialdehyde dehydrogenase from Acinetobacter baumannii in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2021-12-27
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7tcn: Cryo-EM structure of CH235.12 in complex with HIV-1 Env trimer CH505TF.N279K.SOSIP.664 with high-mannose glycans
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2021-12-27
Authors: Manne, K., Henderson, R., Acharya, P.
PDB entry 7tco: Cryo-EM structure of CH235.12 in complex with HIV-1 Env trimer CH505TF.N279K.G458Y.SOSIP.664 with high-mannose glycans
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.19 Å
Deposited: 2021-12-27
Authors: Manne, K., Henderson, R., Acharya, P.
PDB entry 7tcp: Structure of Xenopus KCNQ1-CaM
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2021-12-27
Authors: Willegems, K., Kyriakis, E., Van Petegem, F., Eldstrom, J., Fedida, D.
PDB entry 7tcq: Crystal structure of SARS-CoV-2 neutralizing antibody WS6 in complex with spike S2 peptide
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2021-12-28
Authors: Zhou, T., Kwong, P.D.
PDB entry 7tcr: Methanobactin biosynthetic protein complex of MbnB and MbnC from Methylosinus trichosporium OB3b at 2.62 Angstrom resolution
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methylosinus trichosporium OB3b
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2021-12-28
Authors: Park, Y., Reyes, R.M., Rosenzweig, A.C.
PDB entry 7tcs: M379A mutant tyrosine phenol-lyase complexed with L-methionine
Classification: LYASE
Source organism: Citrobacter freundii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2021-12-28
Authors: Phillips, R.S.
PDB entry 7tct: Integrin alpha IIB beta3 complex with UR2922
Classification: BLOOD CLOTTING/INHIBITOR
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.501 Å
Deposited: 2021-12-28
Authors: Zhu, J., Lin, F.-Y., Zhu, J., Springer, T.A.
PDB entry 7tcu: Methanobactin biosynthetic protein complex of MbnB and MbnC from Methylosinus trichosporium OB3b at 2.31 Angstrom resolution
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methylosinus trichosporium OB3b
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2021-12-28
Authors: Park, Y., Reyes, R.M., Rosenzweig, A.C.
PDB entry 7tcv: VDAC K12E mutant
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.604 Å
Deposited: 2021-12-28
Authors: Khan, F., Abramson, J.
PDB entry 7tcw: Methanobactin biosynthetic protein complex of MbnB and MbnC from Methylosinus trichosporium OB3b, H210S mutant
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methylosinus trichosporium OB3b
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2021-12-28
Authors: Park, Y., Reyes, R.M., Rosenzweig, A.C.
PDB entry 7tcx: Methanobactin biosynthetic protein complex of MbnB and MbnC from Methylosinus trichosporium OB3b at 2.21 Angstrom resolution
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methylosinus trichosporium OB3b
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2021-12-28
Authors: Park, Y., Reyes, R.M., Rosenzweig, A.C.
PDB entry 7tcy: The ubiquitin-associated domain of human thirty-eight negative kinase I
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2021-12-29
Authors: Nawarathnage, S., Bunn, R.D., Stewart, C., Doukov, T., Moody, J.D.
PDB entry 7tcz: Human cytomegalovirus protease mutant (C84A, C87A, C138A, C202A) in complex with inhibitor
Classification: HYRDROLASE/HYDROLASE INHIBITOR
Source organism: Human betaherpesvirus 5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2021-12-29
Authors: Hulce, K.R., Bohn, M., Ongpipattanakul, C., Jaishankar, P., Renslo, A.R., Craik, C.S.
PDB entry 7td0: Lysophosphatidic acid receptor 1-Gi complex bound to LPA
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2021-12-30
Authors: Liu, S., Paknejad, N., Zhu, L., Kihara, Y., Ray, D., Chun, J., Liu, W., Hite, R.K., Huang, X.Y.
PDB entry 7td1: Lysophosphatidic acid receptor 1-Gi complex bound to LPA, state a
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2021-12-30
Authors: Liu, S., Paknejad, N., Zhu, L., Kihara, Y., Ray, D., Chun, J., Liu, W., Hite, R.K., Huang, X.Y.
PDB entry 7td2: Lysophosphatidic acid receptor 1-Gi complex bound to LPA, state a
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2021-12-30
Authors: Liu, S., Paknejad, N., Zhu, L., Kihara, Y., Ray, D., Chun, J., Liu, W., Hite, R.K., Huang, X.Y.
PDB entry 7td3: Sphingosine-1-phosphate receptor 1-Gi complex bound to S1P
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-12-30
Authors: Liu, S., Paknejad, N., Zhu, L., Kihara, Y., Ray, D., Chun, J., Liu, W., Hite, R.K., Huang, X.Y.
PDB entry 7td4: Sphingosine-1-phosphate receptor 1-Gi complex bound to Siponimod
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2021-12-30
Authors: Liu, S., Paknejad, N., Zhu, L., Kihara, Y., Ray, D., Chun, J., Liu, W., Hite, R.K., Huang, X.Y.
PDB entry 7td5: Structure of human PRC2-EZH1 containing phosphorylated SUZ12
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.994 Å
Deposited: 2021-12-30
Authors: Gong, L., Jiao, L., Liu, X.
PDB entry 7td6: aRML prion fibril
Classification: PROTEIN FIBRIL
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2021-12-30
Authors: Hoyt, F., Standke, H.G., Artikis, E., Caughey, B., Kraus, A.
PDB entry 7td7: Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2021-12-30
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 7td8: Integrin alpha IIB beta3 complex with Tirofiban
Classification: BLOOD CLOTTING
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2021-12-30
Authors: Zhu, J., Lin, F.-Y., Zhu, J., Springer, T.A.
PDB entry 7td9: G-059 bound to the SMARCA4 (BRG1) Bromodomain
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2021-12-30
Authors: Tang, Y., Poy, F., Taylor, A.M., Cochran, A.G., Bellon, S.F.
PDB entry 7tda: Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2021-12-30
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 7tdb: Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2021-12-30
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 7tdc: Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.46 Å
Deposited: 2021-12-30
Authors: Nuthanakanti, A., Serganov, A.
PDB entry 7tdd: AtTPC1 D454N-EDTA state II
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2021-12-30
Authors: Dickinson, M.S., Stroud, R.M.
PDB entry 7tde: AtTPC1 DDE mutant with 1 mM Ca2+
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2021-12-31
Authors: Dickinson, M.S., Stroud, R.M.
PDB entry 7tdf: AtTPC1 D454N with 1 mM EDTA state I
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2021-12-31
Authors: Dickinson, M.S., Stroud, R.M.
PDB entry 7tdg: Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in inactivated conformation (Dataset-A)
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-12-31
Authors: Nayak, A.R., Samso, M.
PDB entry 7tdh: Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in open conformation
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2021-12-31
Authors: Nayak, A.R., Samso, M.
PDB entry 7tdi: Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 2 (Dataset-A)
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2021-12-31
Authors: Nayak, A.R., Samso, M.
PDB entry 7tdj: Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 1(Dataset-A)
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2021-12-31
Authors: Nayak, A.R., Samso, M.
PDB entry 7tdk: Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 3 (Dataset-A)
Classification: TRANSPORT PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2021-12-31
Authors: Nayak, A.R., Samso, M.
PDB entry 7tdl: M379A mutant tyrosine phenol-lyase complexed with 3-bromo-DL-phenylalanine
Classification: LYASE
Source organism: Citrobacter freundii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2022-01-01
Authors: Phillips, R.S.
PDB entry 7tdm: CryoEM Structure of sFab COP-2 Complex with human claudin-4 and Clostridium perfringens enterotoxin C-terminal domain
Classification: MEMBRANE PROTEIN
Source organism: Clostridium perfringens; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2022-01-01
Authors: Vecchio, A.J.
PDB entry 7tdn: CryoEM Structure of sFab COP-3 Complex with human claudin-4 and Clostridium perfringens enterotoxin C-terminal domain
Classification: MEMBRANE PROTEIN
Source organism: Clostridium perfringens; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2022-01-01
Authors: Vecchio, A.J.
PDB entry 7tdo: Cryo-EM structure of transmembrane AAA+ protease FtsH in the ADP state
Classification: HYDROLASE
Source organism: Thermotoga maritima
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2022-01-02
Authors: Liu, W., Schoonen, M., Wang, T., McSweeney, S., Liu, Q.
PDB entry 7tdp: Structure of Paenibacillus polymyxa GS bound to Met-Sox-P-ADP (Transition state complex) to 1.98 Angstom
Classification: LIGASE
Source organism: Paenibacillus polymyxa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-01-02
Authors: Schumacher, M.A.
PDB entry 7tdq: Crystal structure of KSHV KicGAS/ORF52
Classification: VIRAL PROTEIN
Source organism: Human herpesvirus 8 strain GK18
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-01-02
Authors: Yin, Q., Tian, Y., Bhowmik, D., Zhu, F.
PDB entry 7tdr: Labrum-interacting protein from saliva LIPS-2 (34K-2) from Aedes albopictus, selenomethionine derivative
Classification: SIGNALING PROTEIN
Source organism: Aedes albopictus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2022-01-03
Authors: Gabrieli, P., Forneris, F.
PDB entry 7tds: Labrum-interacting protein from saliva LIPS-2 (34K-2) from Aedes albopictus, native data
Classification: SIGNALING PROTEIN
Source organism: Aedes albopictus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-01-03
Authors: Gabrieli, P., Forneris, F.
PDB entry 7tdt: Cryo-EM structure of nanodisc-embedded human ABCA1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-01-03
Authors: Plummer, A.M., Culbertson, A.T., Morales-Perez, C.L., Liao, M.
PDB entry 7tdu: Joint X-ray/neutron structure of SARS-CoV-2 main protease (3CL Mpro) in complex with BBH-1
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2022-01-03
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7tdv: Crystal structure of S. aureus glutamine synthetase in Met-Sox-P/ADP transition state complex
Classification: LIGASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2022-01-03
Authors: Schumacher, M.A.
PDB entry 7tdw: Structure of FOXP3-DNA complex
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 4 Å
Deposited: 2022-01-03
Authors: Leng, F., Hur, S.
PDB entry 7tdx: Structure of FOXP3-DNA complex
Classification: TRANSCRIPTION/DNA
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-01-03
Authors: Leng, F., Hur, S.
PDB entry 7tdy: The ubiquitin-associated domain of human thirty-eight negative kinase 1, flexibly fused to the 1TEL crystallization chaperone via a 2-glycine linker and crystallized at low protein concentration
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2022-01-03
Authors: Nawarathnage, S., Bunn, D.R., Stewart, C., Doukev, T., Moody, J.D.
PDB entry 7tdz: Cryo-EM model of protomer of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis
Classification: NUCLEAR PROTEIN
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2022-01-03
Authors: Fontana, P., Wu, H.
PDB entry 7te0: Structure of the SARS-CoV-2 main protease in complex with inhibitor PF-07321332
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-01-03
Authors: Yang, K.S., Liu, W.R.
PDB entry 7te1: SARS-CoV-2 Receptor Binding Domain in Complex with Ab17
Classification: IMMUNE SYSTEM/Viral Protein
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-01-03
Authors: Hauser, B.M., Schmidt, A.G.
PDB entry 7te2: Crystal Structure of AerR from Rhodobacter capsulatus at 2.25 A.
Classification: TRANSCRIPTION
Source organism: Rhodobacter capsulatus Y262
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2022-01-04
Authors: Dragnea, V., Gonzalez-Gutierrez, G., Bauer, C.E.
PDB entry 7te3: Crystal Structure of a Double Loop Deletion Mutant in gC1qR/C1qBP/HABP-1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-01-04
Authors: Geisbrecht, B.V.
PDB entry 7te4: Crystal structure of Fab2 anti-GluN2B antibody
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.456 Å
Deposited: 2022-01-04
Authors: Tajima, N., Furukawa, H.
PDB entry 7te5: Crystal Structure of the Pirin Family Protein Redox-sensitive Bicupin YhaK from Yersinia pestis
Classification: METAL BINDING PROTEIN
Source organism: Yersinia pestis CO92
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-01-04
Authors: Kim, Y., Chhor, G., Endres, M., Babnigg, G., Schneewind, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7te6: Crystal structure of GluN1b-2B ATD complexed to Fab5 anti-GluN2B antibody
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus; Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 4.55 Å
Deposited: 2022-01-04
Authors: Regan, M., Tajima, N., Furukawa, H.
PDB entry 7te7: Estrogen Receptor Alpha Ligand Binding Domain in Complex with RAD1901
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-01-04
Authors: Joiner, C., Hancock, G., Young, K., Hosfield, D.J., Greene, G.L., Fanning, S.W.
PDB entry 7te8: CA14-CBD-DB21 ternary complex
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.998 Å
Deposited: 2022-01-04
Authors: Cao, S., Zheng, N.
PDB entry 7te9: Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 class1
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2022-01-04
Authors: Tajima, N., Furukawa, H.
PDB entry 7tea: Crystal structure of S. aureus GlnR-DNA complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2022-01-04
Authors: Schumacher, M.A.
PDB entry 7teb: Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 non-active1-like
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å
Deposited: 2022-01-04
Authors: Tajima, N., Furukawa, H.
PDB entry 7tec: Structure of the Listeria monocytogenes GlnR-DNA complex to 3.45 Angstrom
Classification: DNA BINDING PROTEIN/DNA
Source organism: Listeria monocytogenes; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2022-01-04
Authors: Schumacher, M.A., Brennan, R.G.
PDB entry 7ted: Human Ornithine Aminotransferase cocrystallized with its inhibitor, (S,E)-3-amino-4-(fluoromethylene)cyclopent-1-ene-1-carboxylate
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2022-01-04
Authors: Butrin, A., Zhu, W., Silverman, R., Liu, D.
PDB entry 7tee: Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 Non-active2-like
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.59 Å
Deposited: 2022-01-04
Authors: Tajima, N., Furukawa, H.
PDB entry 7tef: Cytochrome P450 14 alpha-sterol demethylase CYP51 from Mycobacterium marinum
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium marinum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2022-01-04
Authors: Mohamed, H.A., Bruning, J.B., Bell, S.G.
PDB entry 7teh: Room temperature X-ray structure of SARS-CoV-2 main protease (3CL Mpro) in complex with BBH-2
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-01-05
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7tei: SARS-CoV-2 Omicron 1-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-01-05
Authors: Stalls, V., Acharya, P.
PDB entry 7tej: Cryo-EM structure of the 20S Alpha 3 Deletion proteasome core particle
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2022-01-05
Authors: Walsh Jr., R.M., Rawson, S., Schnell, H.M., Hanna, J.
PDB entry 7tek: SARS-CoV-2 3CLPro in complex with N-(4-(1H-pyrazol-4-yl)phenyl)-N-(3-chlorobenzyl)-2-(pyridin-3-yl)acetamide
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-01-05
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 7tel: SARS-CoV-2 3CLPro in complex with N-(4-(1H-imidazol-4-yl)phenyl)-N-(3-chloro-5-fluorobenzyl)-2-(isoquinolin-4-yl)acetamide
Classification: VIRAL PROTEIN,HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-01-05
Authors: Goins, C.M., Stauffer, S.R.
PDB entry 7tem: Crystal Structure of the Putative Exported Protein YPO2471 from Yersinia pestis
Classification: UNKNOWN FUNCTION
Source organism: Yersinia pestis CO92
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-01-05
Authors: Kim, Y., Chhor, G., Endres, M., Babnigg, G., Schneewind, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7ten: Crystal structure of the Listeria monocytogenes GS-Met-Sox-P- ADP complex to 3.5 Angstrom
Classification: LIGASE/INHIBITOR
Source organism: Listeria monocytogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2022-01-05
Authors: Schumacher, M.A.
PDB entry 7teo: Cryo-EM structure of the 20S Alpha 3 Deletion proteasome core particle in complex with FUB1
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2022-01-05
Authors: Walsh Jr., R.M., Rawson, S., Schnell, H.M., Hanna, J.
PDB entry 7tep: Crystal structure of a Cu-bound cytochrome cb562 variant in the presence of reductant
Classification: METAL BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-01-05
Authors: Kakkis, A., Golub, E.
PDB entry 7teq: Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 active conformation
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.51 Å
Deposited: 2022-01-05
Authors: Tajima, N., Furukawa, H.
PDB entry 7ter: Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 non-active2 conformation
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.23 Å
Deposited: 2022-01-05
Authors: Tajima, N., Furukawa, H.
PDB entry 7tes: Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 in Non-active1 conformation
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2022-01-05
Authors: Tajima, N., Furukawa, H.
PDB entry 7tet: Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 in non-active2-like conformation
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.45 Å
Deposited: 2022-01-05
Authors: Tajima, N., Furukawa, H.
PDB entry 7teu: Crystal structure of JAK2 JH1 with type II inhibitor YLIU-04-105-1
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-01-05
Authors: Hubbard, S.R.
PDB entry 7tev: Human Ornithine Aminotransferase cocrystallized with its inhibitor, (3S,4R)-3-amino-4-(difluoromethyl)cyclopent-1-ene-1-carboxylate
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2022-01-05
Authors: Butrin, A., Zhu, W., Silverman, R., Liu, D.
PDB entry 7tew: Cryo-EM structure of SARS-CoV-2 Delta (B.1.617.2) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tex: Cryo-EM structure of SARS-CoV-2 Delta (B.1.617.2) spike protein in complex with human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tey: Cryo-EM structure of SARS-CoV-2 Delta (B.1.617.2) spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tez: Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tf0: Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) spike protein in complex with human ACE2
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tf1: Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) Q484I spike protein (focused refinement of RBD)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tf2: Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) Q484I spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tf3: Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) Q484A spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tf4: Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) spike protein (focused refinement of RBD)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tf5: Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) spike protein
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2022-01-06
Authors: Zhu, X., Saville, J.W., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Zhou, S., Tuttle, K.S., Subramaniam, S.
PDB entry 7tf6: S. aureus GS(12)-Q-GlnR peptide
Classification: BIOSYNTHETIC PROTEIN, LIGASE
Source organism: Staphylococcus aureus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.15 Å
Deposited: 2022-01-06
Authors: Travis, B.A., Peck, J., Schumacher, M.A.
PDB entry 7tf7: S. aureus GS(12) - apo
Classification: BIOSYNTHETIC PROTEIN, LIGASE
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.13 Å
Deposited: 2022-01-06
Authors: Travis, B.A., Peck, J., Schumacher, M.A.
PDB entry 7tf8: SARS-CoV-2 Omicron 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2022-01-06
Authors: Stalls, V., Acharya, P.
PDB entry 7tf9: L. monocytogenes GS(14)-Q-GlnR peptide
Classification: BIOSYNTHETIC PROTEIN, LIGASE
Source organism: Listeria monocytogenes; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2022-01-06
Authors: Travis, B.A., Peck, J., Schumacher, M.A.
PDB entry 7tfa: P. polymyxa GS(12)-Q-GlnR peptide
Classification: BIOSYNTHETIC PROTEIN, LIGASE
Source organism: Paenibacillus polymyxa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.07 Å
Deposited: 2022-01-06
Authors: Travis, B.A., Peck, J., Schumacher, M.A.
PDB entry 7tfb: P. polymyxa GS(14)-Q-GlnR peptide
Classification: BIOSYNTHETIC PROTEIN, LIGASE
Source organism: Paenibacillus polymyxa; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2022-01-06
Authors: Travis, B.A., Peck, J., Schumacher, M.A.
PDB entry 7tfc: B. subtilis GS(14)-Q-GlnR peptide
Classification: BIOSYNTHETIC PROTEIN, LIGASE
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.96 Å
Deposited: 2022-01-06
Authors: Travis, B.A., Peck, J., Schumacher, M.A.
PDB entry 7tfd: P. polymyxa GS(12) - apo
Classification: BIOSYNTHETIC PROTEIN
Source organism: Paenibacillus polymyxa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2022-01-06
Authors: Travis, B.A., Peck, J., Schumacher, M.A.
PDB entry 7tfe: L. monocytogenes GS(12) - apo
Classification: BIOSYNTHETIC PROTEIN
Source organism: Listeria monocytogenes
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2022-01-06
Authors: Travis, B.A., Peck, J., Schumacher, M.A.
PDB entry 7tff: Crystal structure of human platelet phosphofructokinase-1 mutant- D564N
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2022-01-06
Authors: Hansen, H., Webb, B.A., Robart, A.R., Narayanasami, S.
PDB entry 7tfh: Atomic model of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to two DNA molecules, one at the 5'-recessed end and the other at the 3'-recessed end
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2022-01-06
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 7tfi: Atomic model of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with an open clamp
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2022-01-06
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 7tfj: Atomic model of S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with a closed clamp ring
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-01-06
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 7tfk: Atomic model of S. cerevisiae clamp loader RFC bound to two DNA molecules, one at the 5'-recessed end and the other at the 3'-recessed end
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2022-01-06
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 7tfl: Atomic model of S. cerevisiae clamp loader RFC bound to DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2022-01-06
Authors: Zheng, F., Georgescu, R., Yao, Y.N., O'Donnell, M.E., Li, H.
PDB entry 7tfm: Atomic Structure of the Leishmania spp. Hsp100 N-Domain
Classification: CHAPERONE
Source organism: Leishmania mexicana MHOM/GT/2001/U1103
Experimental method: X-RAY DIFFRACTION
Resolution: 1.055 Å
Deposited: 2022-01-06
Authors: Mercado, J.M., Lee, S., Chang, C., Sung, N., Soong, L., Catic, A., Tsai, F.T.F.
PDB entry 7tfn: Cryo-EM structure of CD4bs antibody Ab1303 in complex with HIV-1 Env trimer BG505 SOSIP.664
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2022-01-06
Authors: Yang, Z., Bjorkman, P.J.
PDB entry 7tfo: Cryo-EM structure of HIV-1 Env trimer BG505 SOSIP.664 in complex with CD4bs antibody Ab1573
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-01-06
Authors: Yang, Z., Bjorkman, P.J.
PDB entry 7tfp: Human Ornithine Aminotransferase cocrystallized with its inhibitor, (1S,3S)-3-amino-4-(difluoromethylene)cyclopentane-1-carboxylic acid.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2022-01-06
Authors: Butrin, A., Zhu, W., Silverman, R., Liu, D.
PDB entry 7tfq: Crystal Structure of the Pirin Family Protein Redox-sensitive Bicupin YhaK Bound to Copper Ion from Yersinia pestis
Classification: METAL BINDING PROTEIN
Source organism: Yersinia pestis CO92
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2022-01-07
Authors: Kim, Y., Chhor, G., Endres, M., Babnigg, G., Schneewind, O., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7tfr: Room temperature X-ray structure of SARS-CoV-2 main protease (3CL Mpro) in complex with NBH-2
Classification: HYDROLASE/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-01-07
Authors: Kovalevsky, A., Kneller, D.W., Coates, L.
PDB entry 7tfs: Cryo-EM of the OmcE nanowires from Geobacter sulfurreducens
Classification: ELECTRON TRANSPORT, PROTEIN FIBRIL
Source organism: Geobacter sulfurreducens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2022-01-07
Authors: Wang, F., Mustafa, K., Chan, C.H., Joshi, K., Hochbaum, A.I., Bond, D.R., Egelman, E.H.
PDB entry 7tft: [T:Ag+/Hg2+:T--(pH11-pH7; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 5s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.42 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tfu: [T:Ag+/Hg2+:T--(pH11-pH7; 30s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 30s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.55 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tfv: [T:Ag+/Hg2+:T--(pH11-pH7; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 60s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.23 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tfw: [T:Ag+/Hg2+:T--(pH11-pH7; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 60s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.92 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tfx: [T:Ag+/Hg2+:T--(pH11-pH7; 120s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 120s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.99 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tfy: [T:Ag+/Hg2+:T--(pH11-pH7; 300s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 300s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.71 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tfz: [T:Ag+/Hg2+:T--(pH8.5-pH11; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 5s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.13 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tg0: [T:Ag+/Hg2+:T--(pH8.5-pH11; 30s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 30s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.05 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tg1: [T:Ag+/Hg2+:T--(pH8.5-pH11; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 60s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.85 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.
PDB entry 7tg2: [T:Ag+/Hg2+:T--(pH8.5-pH11; 90s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 90s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.37 Å
Deposited: 2022-01-07
Authors: Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.