LiteFold/PDB huggingface dataset:
PDB entry 8gp6: Structure of the vaccinia virus A16/G9 sub-complex from the orthopoxvirus entry-fusion complex
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-08-25
Authors: Lu, G.W., Yang, F.L., Lin, S.
PDB entry 8gp7: Structure of Trioxacarcin A covalently bound to RET G4-DNA
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2022-08-25
Authors: Yin, S., Cao, C.
PDB entry 8gpb: STRUCTURAL MECHANISM FOR GLYCOGEN PHOSPHORYLASE CONTROL BY PHOSPHORYLATION AND AMP
Classification: GLYCOGEN PHOSPHORYLASE
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 1990-11-13
Authors: Barford, D., Hu, S.-H., Johnson, L.N.
PDB entry 8gpc: Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed ampicillin
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-08-26
Authors: Shi, X., Dai, Y., Zhang, Q., Liu, W.
PDB entry 8gpd: Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed penicillin V
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-08-26
Authors: Shi, X., Dai, Y., Zhang, Q., Liu, W.
PDB entry 8gpe: Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed penicillin G
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-08-26
Authors: Shi, X., Dai, Y., Zhang, Q., Liu, W.
PDB entry 8gpg: HIV-1 Env X18 UFO in complex with F6 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2022-08-26
Authors: Niu, J., Xu, Y.W., Yang, B.
PDB entry 8gph: Crystal structure of protease 3C (C160A mutant) from Seneca Valley Virus
Classification: VIRAL PROTEIN
Source organism: Senecavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.608 Å
Deposited: 2022-08-26
Authors: Zhao, H.F., Zhang, H.
PDB entry 8gpi: HIV-1 Env X18 UFO in complex with 8ANC195 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-08-26
Authors: Niu, J., Xu, Y.W., Yang, B.
PDB entry 8gpj: HIV-1 Env X16 UFO in complex with 8ANC195 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-26
Authors: Niu, J., Xu, Y.W., Yang, B.
PDB entry 8gpk: Crystal structure of human anti-HIV-1 broadly neutralizing antibody F6 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.34 Å
Deposited: 2022-08-26
Authors: Niu, J., Yang, B.
PDB entry 8gpm: Acinetobacter baumannii carbonic anhydrase
Classification: CARBOHYDRATE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2022-08-26
Authors: Wen, Y., Jiao, M.
PDB entry 8gpn: Human menin in complex with H3K79Me2 nucleosome
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-08-26
Authors: Lin, J., Yu, D., Lam, W.H., Dang, S., Zhai, Y., Li, X.D.
PDB entry 8gpp: Acinetobacter baumannii carbonic anhydrase PaaY
Classification: CARBOHYDRATE
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-08-26
Authors: Wen, Y., Jiao, M.
PDB entry 8gpr: GluK1-1a receptor captured in the desensitized state
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.2 Å
Deposited: 2022-08-26
Authors: Dhingra, S., Kumar, J.
PDB entry 8gps: Cytoplasmic domain structure of the MgtE Mg2+ channel from Chryseobacterium hispalense
Classification: TRANSPORT PROTEIN
Source organism: Chryseobacterium hispalense
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2022-08-27
Authors: Wang, M., Zhao, Y., Hattori, M.
PDB entry 8gpt: YFV_E_YD6scFv_postfusion
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Yellow fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2022-08-27
Authors: Li, Y., Wu, L., Qi, J., Yan, J., Gao, G.F.
PDB entry 8gpu: YFV_E_YD6Fab_prefusion
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Yellow fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2022-08-27
Authors: Li, Y., Wu, L., Qi, J., Yan, J., Gao, G.F.
PDB entry 8gpv: Cytoplasmic domain structure of the MgtE Mg2+ channel from Clostridiales bacterium
Classification: TRANSPORT PROTEIN
Source organism: Clostridiales bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2022-08-27
Authors: Wang, M., Zhao, Y., Hattori, M.
PDB entry 8gpw: Structure of Penicillin-binding protein 3 (PBP3) from Klebsiella pneumoniae with ligand 18G
Classification: TRANSFERASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-08-27
Authors: Song, D.Q., Li, Y.H.
PDB entry 8gpx: YFV_E_YD73Fab_postfusion
Classification: ANTIVIRAL PROTEIN
Source organism: Homo sapiens; Yellow fever virus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å
Deposited: 2022-08-27
Authors: Li, Y., Wu, L., Chai, Y., Qi, J., Yan, J., Gao, G.F.
PDB entry 8gpy: Crystal structure of Omicron BA.4/5 RBD in complex with a neutralizing antibody scFv
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2022-08-27
Authors: Gao, Y.X., Song, Z.D., Wang, W.M., Guo, Y.
PDB entry 8gpz: Crystal structure of BRD4 bromodomain 1 (BD1) in complex with C239-0012
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.528 Å
Deposited: 2022-08-27
Authors: Park, T.H., Lee, B.I.
PDB entry 8gq0: Crystal structure of BRD4 bromodomain 1 (BD1) in complex with STL233497
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2022-08-27
Authors: Park, T.H., Lee, B.I.
PDB entry 8gq1: HyHEL10 Fab complexed with hen egg lysozyme carrying arginine cluster in framework region of light chain.
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2022-08-28
Authors: Matsuura, H., Hirata, K., Sakai, N., Nakakido, M., Tsumoto, K.
PDB entry 8gq3: RTT109 mutant from Candida albicans
Classification: TRANSFERASE
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.767 Å
Deposited: 2022-08-28
Authors: Chen, Y.J., Su, D.
PDB entry 8gq4: Histone acetyltransferase Rtt109 mutant-N195A
Classification: TRANSFERASE
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2022-08-28
Authors: Chen, Y.J., Su, D.
PDB entry 8gq5: Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
Classification: HYDROLASE
Source organism: Homo sapiens; Vicugna pacos
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2022-08-29
Authors: Cai, Y., Zhang, H.
PDB entry 8gq6: Cryo-EM Structure of the KBTBD2-CUL3-Rbx1 dimeric complex
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.96 Å
Deposited: 2022-08-29
Authors: Sun, L., Chen, Z., Hu, Y., Mao, Q.
PDB entry 8gq9: Crystal structure of lasso peptide epimerase MslH
Classification: ISOMERASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-29
Authors: Nakashima, Y., Morita, H.
PDB entry 8gqa: Crystal structure of lasso peptide epimerase MslH in complexed with precursor peptide analog MslAdeltaW21
Classification: ISOMERASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2022-08-29
Authors: Nakashima, Y., Morita, H.
PDB entry 8gqb: Crystal structure of lasso peptide epimerase MslH D11A mutant
Classification: ISOMERASE
Source organism: Streptomyces sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2022-08-29
Authors: Nakashima, Y., Morita, H.
PDB entry 8gqc: Crystal structure of the SARS-unique domain (SUD) of SARS-CoV-2 (1.35 angstrom resolution)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-08-30
Authors: Qin, B., Li, Z., Aumonier, S., Wang, M., Cui, S.
PDB entry 8gqd: Complex Structure of Arginine Kinase McsB and McsA from Staphylococcus aureus
Classification: TRANSFERASE
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2022-08-30
Authors: Lu, K., Luo, B., Tao, X., Li, H., Xie, Y., Zhao, Z., Xia, W., Su, Z., Mao, Z.
PDB entry 8gqe: Crystal structure of the W285A mutant of UVR8 in complex with RUP2
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-30
Authors: Wang, Y.D., Wang, L.X., Guan, Z.Y., chang, H.F., Yin, P.
PDB entry 8gqf: Crystal structure of Thiolase
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gqg: Crystal structure of Thioloase from Pseudomonas aeruginosa PAO1
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gqh: Structure of Thiolase from Pseudomonas aeruginosa PAO1
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gqi: Structure of Thiolase from Pseudomonas aeruginosa PAO1
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gqj: Structure of Thiolase from Pseudomonas aeruginosa PAO1
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gqk: Crystal structure of Thiolase from Pseudomonas aeruginosa PAO1
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gql: X-ray structure of Thiolase from Pseudomonas aeruginosa PAO1
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gqm: Crystal structure of Thiolase complexed with acetyl coenzyme A
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gqn: X-ray structure of thiolase with CoA
Classification: TRANSFERASE
Source organism: Pseudomonas aeruginosa PAO1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-08-30
Authors: Hong, J., Son, H.F., Kim, K.J.
PDB entry 8gqo: Solution NMR structure of vaccinia virus protein A28: an entry-fusion complex component
Classification: VIRAL PROTEIN
Source organism: Vaccinia virus (strain Western Reserve)
Experimental method: SOLUTION NMR
Deposited: 2022-08-30
Authors: Tsai, M.H., Wu, D.N., Tzou, D.L.M.
PDB entry 8gqp: Complex of D-protein binder D-19437 and L-target L-Pep-1
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-08-30
Authors: Liang, M.F., Li, S.C., Wang, T.Y., Liu, L., Lu, P.L.
PDB entry 8gqq: The three-dimensional structure of Cystatin A2, a cysteine protease inhibitor from Dictyostelium discoideum
Classification: STRUCTURAL PROTEIN
Source organism: Dictyostelium discoideum AX3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.069 Å
Deposited: 2022-08-30
Authors: Dinh, T.T., Dao, O., Lee, K.H.
PDB entry 8gqr: Crystal structure of VioD with FAD
Classification: FLAVOPROTEIN
Source organism: Duganella sp. ZLP-XI
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-08-30
Authors: Ran, T., Wang, W., Xu, M.
PDB entry 8gqt: Structure of Mpro complexed with Quercetin
Classification: CELL INVASION
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2022-08-30
Authors: Dong, J., Yang, G.-F.
PDB entry 8gqu: AK-42 inhibitor binding human ClC-2 TMD
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-08-30
Authors: Wang, L.
PDB entry 8gqv: The Crystal Structures of a Swine SLA-2*HB01 Molecules Complexed with a CTL epitope from Asia1 serotype of Foot-and-mouth disease virus
Classification: IMMUNE SYSTEM/EPITOPE
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-08-31
Authors: Feng, L., Gao, Y.Y., Sun, M.W., Li, Z.B., Zhang, Q., Yang, J., Qiao, C., Jin, H., Feng, H.S., Xian, Y.H., Qi, J.X., Gao, G.F., Liu, W.J., Gao, F.S.
PDB entry 8gqw: The Crystal Structures of a Swine SLA-2*HB01 Molecules Complexed with a CTL epitope from Asia1 serotype of Foot-and-mouth disease virus
Classification: IMMUNE SYSTEM/EPITOPE
Source organism: Sus scrofa; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2022-08-31
Authors: Feng, L., Gao, Y.Y., Sun, M.W., Li, Z.B., Zhang, Q., Yang, J., Qiao, C., Jin, H., Feng, H.S., Xian, Y.H., Qi, J.X., Gao, G.F., Liu, W.J., Gao, F.S.
PDB entry 8gqy: CryoEM structure of pentameric MotA from Aquifex aeolicus
Classification: MEMBRANE PROTEIN
Source organism: Aquifex aeolicus VF5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-08-31
Authors: Nishikino, T., Takekawa, N., Kishikawa, J., Hirose, M., Onoe, S., Kato, T., Imada, K.
PDB entry 8gqz: Crystal structure of mitochondrial citrate synthase (Cit1) from Saccharomyces cerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2022-08-31
Authors: Nishio, K., Nakatsukasa, K., Kamura, T., Mizushima, T.
PDB entry 8gr1: Crystal structure of D110V/K151L mutant of GATase subunit of Methanocaldococcus jannaschii GMP synthetase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2022-08-31
Authors: Chandrashekarmath, A., Bellur, A.
PDB entry 8gr2: Crystal structure of the GDSL-family esterase CJ0610C from Campylobacter jejuni
Classification: HYDROLASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-08-31
Authors: Ki, D.U., Song, W.S., Yoon, S.I.
PDB entry 8gr3: Crystal structure of K151L/Y158F mutant of GATase subunit of Methanocaldococcus jannaschii GMP synthetase
Classification: TRANSFERASE
Source organism: Methanocaldococcus jannaschii DSM 2661
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2022-08-31
Authors: Chandrashekarmath, A., Bellur, A.
PDB entry 8gr5: Cop4 from Antrodia cinnamomea in apo form
Classification: LYASE
Source organism: Antrodia cinnamomea
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-09-01
Authors: Chen, S.C., Hsu, C.H.
PDB entry 8gr6: Crystal Structure of pilus-specific Sortase C from Streptococcus sanguinis
Classification: HYDROLASE
Source organism: Streptococcus sanguinis SK36
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2022-09-01
Authors: Yadav, S., Parijat, P., Krishnan, V.
PDB entry 8gr7: Cop4 from Antrodia cinnamomea in complex with pyrophosphate and magnesium
Classification: LYASE
Source organism: Antrodia cinnamomea
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-09-01
Authors: Chen, S.C., Hsu, C.H.
PDB entry 8gr8: Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomycescerevisiae
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2022-09-01
Authors: Nishio, K., Nakatsukasa, K., Kamura, T., Mizushima, T.
PDB entry 8gr9: Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomyces cerevisiae in complex with oxaloacetate and coenzyme-A
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2022-09-01
Authors: Nishio, K., Nakatsukasa, K., Kamura, T., Mizushima, T.
PDB entry 8gra: Structure of Type VI secretion system cargo delivery vehicle Hcp-VgrG-PAAR
Classification: TRANSPORT PROTEIN
Source organism: Bacteroides fragilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-01
Authors: Wen, Y., He, W., Zhu, L.
PDB entry 8grb: Crystal structure of a constitutively active mutant of the alpha beta heterodimer of human IDH3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.848 Å
Deposited: 2022-09-01
Authors: Sun, P., Chen, X., Ding, J.
PDB entry 8grd: Crystal structure of a constitutively active mutant of the alpha beta heterodimer of human IDH3 in complex with ADP and Mg
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.699 Å
Deposited: 2022-09-01
Authors: Chen, X., Sun, P., Ding, J.
PDB entry 8gre: F-box protein in complex with skp1(FL) and substrate
Classification: TRANSFERASE/LIGASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2022-09-01
Authors: Nishio, K., Nakatsukasa, K., Kamura, T., Mizushima, T.
PDB entry 8grf: Crystal structure of F-box protein in the ternary complex with adaptor protein Skp1(DL) and its substrate
Classification: TRANSFERASE/LIGASE
Source organism: Saccharomyces cerevisiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.53 Å
Deposited: 2022-09-01
Authors: Nishio, K., Nakatsukasa, K., Kamura, T., Mizushima, T.
PDB entry 8grg: Crystal structure of a constitutively active mutant of the alpha gamma heterodimer of human IDH3
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.699 Å
Deposited: 2022-09-01
Authors: Sun, P., Chen, X., Ding, J.
PDB entry 8grh: Crystal structure of a constitutively active mutant of the alpha gamma heterodimer of human IDH3 in complex with CIT
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.506 Å
Deposited: 2022-09-01
Authors: Sun, P., Chen, X., Ding, J.
PDB entry 8gri: Orf1-E312A-glycine-glycylthricin
Classification: OXIDOREDUCTASE
Source organism: Streptomyces luteocolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.365 Å
Deposited: 2022-09-01
Authors: Wang, Y.L., Li, T.L.
PDB entry 8grj: Crystal structure of gamma-alpha subunit complex from Burkholderia cepacia FAD glucose dehydrogenase in complex with gluconolactone
Classification: OXIDOREDUCTASE
Source organism: Burkholderia cepacia
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2022-09-01
Authors: Yoshida, H., Kojima, K., Tsugawa, W., Okuda-Shimazaki, J., Kerrigan, J.A., Sode, K.
PDB entry 8grm: Cryo-EM structure of PRC1 bound to H2AK119-UbcH5b-Ub nucleosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2022-09-02
Authors: Ai, H.S., Zebin, T., Zhihend, D., Jiakun, T., Liying, Z., Jia-Bin, L., Man, P., Liu, L.
PDB entry 8grn: AtOSCA1.1 extended state
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2022-09-02
Authors: Zhang, M.F.
PDB entry 8gro: AtOSCA3.1 contracted state
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-09-02
Authors: Zhang, M.F.
PDB entry 8grq: Cryo-EM structure of BRCA1/BARD1 bound to H2AK127-UbcH5c-Ub nucleosome
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2022-09-02
Authors: Ai, H.S., Zebin, T., Zhiheng, D., Jiakun, T., Liying, Z., Jia-Bin, L., Man, P., Liu, L.
PDB entry 8grr: Complex of FMDV A/WH/CHA/09 and bovine neutralizing scFv antibody W125
Classification: VIRUS
Source organism: Bos taurus; Foot-and-mouth disease virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2022-09-02
Authors: He, Y., Kun, L.
PDB entry 8grs: human TMEM63A
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-02
Authors: Zhang, M.F.
PDB entry 8grt: Small Dipeptide Analogues developed by Co-crystal Structure of Stenotrophomonas maltophilia Dipeptidyl Peptidase 7
Classification: HYDROLASE
Source organism: Stenotrophomonas maltophilia (strain R551-3)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2022-09-02
Authors: Yasumitsu, S., Koushi, H., Akihiro, N., Yoshiyuki, Y., Wataru, O., Mizuki, S., Saori, R., Nobutada, T., Anna, M., Keiko, H., Tsuda, Y.
PDB entry 8gru: Crystal structure of a constitutively active mutant of the alpha beta heterodimer of human IDH3 in complex with ICT, NAD and Ca
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.847 Å
Deposited: 2022-09-02
Authors: Sun, P., Chen, X., Ding, J.
PDB entry 8grv: Dictyostelium discoideum Lactate dehydrogenase (DicLDHA)with NAD
Classification: OXIDOREDUCTASE
Source organism: Dictyostelium discoideum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2022-09-02
Authors: Dao, O., Lee, K.H.
PDB entry 8grw: Spiroplasma melliferum FtsZ F224M bound to GDP
Classification: CELL CYCLE
Source organism: Spiroplasma melliferum KC3
Experimental method: X-RAY DIFFRACTION
Resolution: 2.40005 Å
Deposited: 2022-09-02
Authors: Chakraborty, J., Pananghat, G.
PDB entry 8grx: APOE4 receptor in complex with APOE4 NTD
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2022-09-02
Authors: Zhou, J., Wang, Y., Huang, G., Shi, Y.
PDB entry 8gry: Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with rat ACE2 (local refinement)
Classification: HYDROLASE/VIRAL PROTEIN
Source organism: Rattus norvegicus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2022-09-03
Authors: Zhao, Z.N., Xie, Y.F., Chai, Y., Qi, J.X., Gao, G.F.
PDB entry 8grz: X-ray crystal structure of V71C human neuroglobin mutant
Classification: OXYGEN STORAGE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-03
Authors: Lin, Y.W.
PDB entry 8gs1: Crystal structure of AziU2-U3 complex from Streptomyces sahachiroi NRRL2485
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces sahachiroi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-04
Authors: Cheng, Y., Li, P., Liu, W., Fang, P.
PDB entry 8gs2: Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex
Classification: RNA BINDING PROTEIN/RNA
Source organism: Desulfonema ishimotonii; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2022-09-04
Authors: Kato, K., Okazaki, S., Ishikawa, J., Isayama, Y., Nishizawa, T., Nishimasu, H.
PDB entry 8gs3: Cryo-EM structure of human Neuroligin 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2022-09-04
Authors: Zhang, H., Zhang, Z., Hou, M.
PDB entry 8gs4: Cryo-EM structure of human Neuroligin 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2022-09-04
Authors: Zhang, H., Zhang, Z., Hou, M.
PDB entry 8gs5: Crystal structure of a constitutively active mutant of human IDH3 holoenzyme in apo form
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 4.486 Å
Deposited: 2022-09-04
Authors: Sun, P., Chen, X., Ding, J.
PDB entry 8gs6: Structure of the SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2022-09-05
Authors: Anraku, Y., Tabata-Sasaki, K., Kita, S., Fukuhara, H., Maenaka, K., Hashiguchi, T.
PDB entry 8gs7: SOLUTION NMR STRUCTURE OF N-TERMINAL DOMAIN OF TRICONEPHILA CLAVIPES MAJOR AMPULLATE SPIDROIN 2
Classification: STRUCTURAL PROTEIN
Source organism: Trichonephila clavipes
Experimental method: SOLUTION NMR
Deposited: 2022-09-05
Authors: Oktaviani, N.A., Malay, A.D., Matsugami, A., Hayashi, F., Numata, K.
PDB entry 8gs8: cryo-EM structure of the human respiratory complex II
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2022-09-05
Authors: Du, Z., Zhou, X., Lai, Y., Xu, J., Zhang, Y., Zhou, S., Liu, F., Gao, Y., Gong, H., Rao, Z.
PDB entry 8gs9: SARS-CoV-2 BA.2 spike RBD in complex bound with VacBB-551
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2022-09-05
Authors: Liu, C.C., Ju, B., Shen, S.L., Zhang, Z.
PDB entry 8gsa: Solution structure of holo acyl carrier protein A from Enterococcus faecalis
Classification: BIOSYNTHETIC PROTEIN
Source organism: Enterococcus faecalis
Experimental method: SOLUTION NMR
Deposited: 2022-09-05
Authors: Yeon, J., Kim, Y.
PDB entry 8gsb: SARS-COV-2 BA.1 Spike incomplex with VacBB-665
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Deposited: 2022-09-05
Authors: Liu, C.C., Ju, B., Shen, S.L., Zhang, Z.
PDB entry 8gsc: Echovirus3 A-particle in complex with 6D10 Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Echovirus E3; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2022-09-06
Authors: Wang, X., Fu, W.
PDB entry 8gsd: Echovirus3 full particle in complex with 6D10 Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Echovirus E3; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-06
Authors: Wang, X., Fu, W.
PDB entry 8gse: Echovirus3 capsid protein in complex with 6D10 Fab (upright)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Echovirus E3; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2022-09-06
Authors: Wang, X., Fu, W.
PDB entry 8gsf: Echovirus3 empty particle in complex with 6D10 Fab (sideling)
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Echovirus E3; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2022-09-06
Authors: Wang, X., Fu, W.
PDB entry 8gsg: T3R3 form of Human insulin with single Zn
Classification: HORMONE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2022-09-06
Authors: Zhu, Z.L.
PDB entry 8gsi: Structure of the cobolimab Fab
Classification: IMMUNE SYSTEM
Source organism: Camelus bactrianus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-09-06
Authors: Heo, Y.S., Choi, S.B.
PDB entry 8gsj: APC-Asef tripeptide inhibitor
Classification: PROTEIN BINDING/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-09-06
Authors: Zhang, J., Wang, X.F., Song, K.
PDB entry 8gsk: Crystal Structure of S302G single mutant of O-acetyl-L-serine sulfhydrylase from Haemophilus influenzae at 2.2 A
Classification: TRANSFERASE
Source organism: Haemophilus influenzae Rd KW20
Experimental method: X-RAY DIFFRACTION
Resolution: 2.271 Å
Deposited: 2022-09-06
Authors: Kumar, N., Mahajan, A.S.
PDB entry 8gsm: Crystal Structure of VibMO1
Classification: BIOSYNTHETIC PROTEIN
Source organism: Boreostereum vibrans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2022-09-06
Authors: Ying, Z., Feng, K.N.
PDB entry 8gso: AtOSCA3.1 channel extended state
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2022-09-06
Authors: Zhang, M.F.
PDB entry 8gsp: Complex of FMDV A/WH/CHA/09 and bovine neutralizing scFv antibody W2
Classification: VIRUS
Source organism: Bos taurus; Foot-and-mouth disease virus A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2022-09-06
Authors: He, Y., Li, K.
PDB entry 8gsq: Structure based studies reveal an atypical antipsychotic drug candidate - Paliperidone as a potent hSOD1 modulator with implications in ALS treatment.
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2022-09-06
Authors: Aouti, S., Padmanabhan, B.
PDB entry 8gsr: Crystal structure of L-2,4-diketo-3-deoxyrhamnonate hydrolase from Sphingomonas sp. (apo-form)
Classification: HYDROLASE
Source organism: Sphingomonas sp. SKA58
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2022-09-07
Authors: Fukuhara, S., Watanabe, Y., Watanabe, S., Nishiwaki, H.
PDB entry 8gss: Human glutathione S-transferase P1-1, complex with glutathione
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1997-08-14
Authors: Oakley, A., Parker, M.
PDB entry 8gst: Crystal structure of L-2,4-diketo-3-deoxyrhamnonate hydrolase from Sphingomonas sp. (pyruvate bound-form)
Classification: HYDROLASE
Source organism: Sphingomonas sp. SKA58
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2022-09-07
Authors: Fukuhara, S., Watanabe, Y., Watanabe, S., Nishiwaki, H.
PDB entry 8gsu: Crystal structure of human cardiac alpha actin (WT_ADP-Pi) in complex with fragmin F1 domain
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-07
Authors: Iwasa, M., Oda, T., Takeda, S.
PDB entry 8gsv: Crystal structure of human BAK in complex with the Pxt1 BH3 domain
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-09-07
Authors: Lim, D., Ku, B.
PDB entry 8gsw: Crystal structure of human cardiac alpha actin A108G mutant (AMPPNP state) in complex with fragmin F1 domain
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-09-07
Authors: Iwasa, M., Oda, T., Takeda, S.
PDB entry 8gsx: X-ray structure of Clostridium perfringens pili protein B collagen-binding domains
Classification: PROTEIN FIBRIL
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2022-09-07
Authors: Kamitori, S., Yamada, M., Tamai, E.
PDB entry 8gsy: X-ray structure of Clostridium perfringens pili protein B N-terminal domain
Classification: PROTEIN FIBRIL
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-09-07
Authors: Kamitori, S., Yamada, M., Tamai, E.
PDB entry 8gsz: Structure of STING SAVI-related mutant V147L
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2022-09-07
Authors: Wang, Z., Yu, X.
PDB entry 8gt0: Structure of falcipain and human Stefin A complex
Classification: HYDROLASE
Source organism: Homo sapiens; Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.28 Å
Deposited: 2022-09-07
Authors: Chakraborty, S., Biswas, S.
PDB entry 8gt1: Crystal structure of human cardiac alpha actin A108G mutant (ADP-Pi state) in complex with fragmin F1 domain
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2022-09-07
Authors: Iwasa, M., Oda, T., Takeda, S.
PDB entry 8gt2: Crystal structure of human cardiac alpha actin P109A mutant (AMPPNP state) in complex with fragmin F1 domain
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-07
Authors: Iwasa, M., Oda, T., Takeda, S.
PDB entry 8gt3: Crystal structure of human cardiac alpha actin P109A mutant (ADP-Pi state) in complex with fragmin F1 domain
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-07
Authors: Iwasa, M., Oda, T., Takeda, S.
PDB entry 8gt4: Crystal structure of human cardiac alpha actin Q137A mutant (AMPPNP state) in complex with fragmin F1 domain
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2022-09-07
Authors: Iwasa, M., Oda, T., Takeda, S.
PDB entry 8gt5: Crystal structure of human cardiac alpha actin Q137A mutant (ADP-Pi state) in complex with fragmin F1 domain
Classification: CONTRACTILE PROTEIN
Source organism: Homo sapiens; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2022-09-07
Authors: Iwasa, M., Oda, T., Takeda, S.
PDB entry 8gt6: human STING With agonist HB3089
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2022-09-07
Authors: Wang, Z., Yu, X.
PDB entry 8gt7: Structure of falcipain and human Stefin A mutant complex
Classification: HYDROLASE
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 3.28 Å
Deposited: 2022-09-07
Authors: Chakraborty, S., Biswas, S.
PDB entry 8gt9: Selective targeting of the Beclin 2-Atg14L coiled coil complex by stapled peptides promotes autophagy and endolysosomal trafficking of GPCRs
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2022-09-07
Authors: Qiu, X., Zhao, Y.
PDB entry 8gta: Cryo-EM structure of the marine siphophage vB_Dshs-R4C capsid
Classification: VIRAL PROTEIN
Source organism: Dinoroseobacter phage vB_DshS-R4C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2022-09-07
Authors: Sun, H., Huang, Y., Zheng, Q., Li, S., Zhang, R., Xia, N.
PDB entry 8gtb: Cryo-EM structure of the marine siphophage vB_DshS-R4C tail tube protein
Classification: VIRAL PROTEIN
Source organism: Dinoroseobacter phage vB_DshS-R4C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2022-09-08
Authors: Huang, Y., Sun, H., Wei, S., Zheng, Q., Li, S., Zhang, R., Xia, N.
PDB entry 8gtc: Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex
Classification: VIRAL PROTEIN
Source organism: Dinoroseobacter phage vB_DshS-R4C
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2022-09-08
Authors: Huang, Y., Sun, H., Wei, S., Zheng, Q., Li, S., Zhang, R., Xia, N.
PDB entry 8gtd: Cryo-EM model of the marine siphophage vB_DshS-R4C portal-adaptor complex
Classification: VIRUS
Source organism: Dinoroseobacter phage vB_DshS-R4C
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2022-09-08
Authors: Huang, Y., Sun, H., Wei, S., Zheng, Q., Li, S., Zhang, R., Xia, N.
PDB entry 8gtf: Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex
Classification: VIRUS
Source organism: Dinoroseobacter phage vB_DshS-R4C
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2022-09-08
Authors: Huang, Y., Sun, H., Wei, S., Zheng, Q., Li, S., Zhang, R., Xia, N.
PDB entry 8gtg: Corticotropin-releasing hormone receptor 1(CRF1R) bound with BMK-I-152 by XFEL
Classification: MEMBRANE PROTEIN
Source organism: Enterobacteria phage T6; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2022-09-08
Authors: Cho, H.S., Kim, H.
PDB entry 8gth: Crystal strucuture of cyt c551 from anoxygenic phototrophic bacterium Roseiflexus castenholzii
Classification: ELECTRON TRANSPORT
Source organism: Roseiflexus castenholzii DSM 13941
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-09-08
Authors: Min, Z.Z., Meng, H.L., Xu, X.L.
PDB entry 8gti: Corticotropin-releasing hormone receptor 1(CRF1R) bound with BMK-C205 by XFEL
Classification: MEMBRANE PROTEIN
Source organism: Enterobacteria phage T6; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2022-09-08
Authors: Cho, H.S., Kim, H.
PDB entry 8gtj: Crystal structure of IpaH7.8-LRR and GSDMB isoform-4 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Shigella flexneri
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2022-09-08
Authors: Zhong, X., Hou, Y.J., Ding, J.
PDB entry 8gtk: Crystal structure of IpaH7.8-LRR and GSDMB isoform-1 complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Shigella flexneri
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2022-09-08
Authors: Zhong, X., Hou, Y.J., Ding, J.
PDB entry 8gtl: Crystal Structure of Cytochrome P450 (CYP101D5)
Classification: TRANSFERASE
Source organism: Sphingomonas echinoides
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2022-09-08
Authors: Do, H., Lee, J.H.
PDB entry 8gtm: Corticotropin-releasing hormone receptor 1(CRF1R) bound with BMK-C203 by XFEL
Classification: MEMBRANE PROTEIN
Source organism: Enterobacteria phage T6; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-09-08
Authors: Cho, H.S., Kim, H.
PDB entry 8gtn: Cryo-EM structure of the gasdermin B pore
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2022-09-08
Authors: Hou, Y.J., Cheng, H., Ding, J.
PDB entry 8gto: cryo-EM structure of Omicron BA.5 S protein in complex with XGv282
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-08
Authors: Xia, X.Y., Zhang, Y.Y., Chi, X.M., Huang, B.D., Wu, L.S., Zhou, Q.
PDB entry 8gtp: cryo-EM structure of Omicron BA.5 S protein in complex with XGv289
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-08
Authors: Xia, X.Y., Zhang, Y.Y., Chi, X.M., Huang, B.D., Wu, L.S., Zhou, Q.
PDB entry 8gtq: cryo-EM structure of Omicron BA.5 S protein in complex with S2L20
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-08
Authors: Xia, X.Y., Zhang, Y.Y., Chi, X.M., Huang, B.D., Wu, L.S., Zhou, Q.
PDB entry 8gtr: CryoEM structure of human Pannexin isoform 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å
Deposited: 2022-09-08
Authors: Hussain, N., Penmatsa, A.
PDB entry 8gts: CryoEM structure of human Pannexin1 with R217H congenital mutation.
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.87 Å
Deposited: 2022-09-08
Authors: Hussain, N., Penmatsa, A.
PDB entry 8gtt: Cryo-EM structure of human Pannexin1 resembling Pannexin2 pore with W74R/R75Dmutations
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2022-09-08
Authors: Hussain, N., Penmatsa, A.
PDB entry 8gtu: Crystal Structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with Clidinium
Classification: TRANSPORT PROTEIN
Source organism: Liberibacter asiaticus (strain psy62)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2022-09-08
Authors: Lonare, S., Sharma, M., Sharma, A.K.
PDB entry 8gtv: SARS-CoV-2 3CL protease (3CLpro) in complex with compound JZD-07
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-08
Authors: Su, H.X., Nie, T.Q., Xie, H., Li, M.J., Xu, Y.C.
PDB entry 8gtw: SARS-CoV-2 3CL protease (3CLpro) in complex with compound JZD-26
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2022-09-08
Authors: Su, H.X., Nie, T.Q., Xie, H., Li, M.J., Xu, Y.C.
PDB entry 8gtx: Crystal Structure of human Spindlin1-HBx complex
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-09
Authors: Li, H., Liu, W.
PDB entry 8gty: Crystal structure of exopolyphosphatase (PPX) from Zymomonas mobilis in complex with magnesium ions
Classification: METAL BINDING PROTEIN
Source organism: Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2022-09-09
Authors: Lu, Z., Wang, J., Zhang, B.
PDB entry 8gtz: Crystal structure of exopolyphosphatase (PPX) mutant E137A from Zymomonas mobilis in complex with magnesium ions
Classification: METAL BINDING PROTEIN
Source organism: Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2022-09-09
Authors: Lu, Z., Wang, J., Zhang, B.
PDB entry 8gu0: Crystal structure of a fungal halogenase RadH
Classification: FLAVOPROTEIN
Source organism: Floropilus chiversii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2022-09-09
Authors: Jiang, S.M., Brown, C.J.
PDB entry 8gu1: Crystal Structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with Pimozide
Classification: TRANSPORT PROTEIN
Source organism: Candidatus Liberibacter asiaticus str. psy62
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2022-09-09
Authors: Lonare, S., Sharma, M., Sharma, A.K.
PDB entry 8gu3: Crystal structure of Caenorhabditis elegans METT-10 methyltransferase domain
Classification: TRANSFERASE
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.01 Å
Deposited: 2022-09-09
Authors: Ju, J., Tomita, K.
PDB entry 8gu4: Poly(ethylene terephthalate) hydrolase (IsPETase)-linker
Classification: HYDROLASE
Source organism: Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2022-09-09
Authors: Xiao, Y.J., Wang, Z.F.
PDB entry 8gu5: Wild type poly(ethylene terephthalate) hydrolase
Classification: HYDROLASE
Source organism: Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2022-09-09
Authors: Xiao, Y.J., Wang, Z.F.
PDB entry 8gu6: Structure of the SbCas7-11-crRNA-NTR-Csx29 complex
Classification: RNA BINDING PROTEIN
Source organism: Candidatus Scalindua brodae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2022-09-10
Authors: Yu, G., Wang, X., Deng, Z., Zhang, H.
PDB entry 8gu7: Selective targeting of the Beclin 2-Atg14L coiled coil complex by stapled peptides promotes autophagy and endolysosomal trafficking of GPCRs
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2022-09-11
Authors: Qiu, X., Zhao, Y.
PDB entry 8gua: Cryo-EM structure of cancer-specific PI3Kalpha mutant E542K in complex with BYL-719
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2022-09-11
Authors: Liu, X., Zhou, Q., Hart, J.R., Xu, Y., Yang, S., Yang, D., Vogt, P.K., Wang, M.-W.
PDB entry 8gub: Cryo-EM structure of cancer-specific PI3Kalpha mutant H1047R in complex with BYL-719
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2022-09-11
Authors: Liu, X., Zhou, Q., Hart, J.R., Xu, Y., Yang, S., Yang, D., Vogt, P.K., Wang, M.-W.
PDB entry 8guc: Solution structures of a disulfide-rich peptide selected via Cellular Protein Quality Control
Classification: PROTEIN BINDING
Experimental method: SOLUTION NMR
Deposited: 2022-09-11
Authors: Fan, S.H., Wu, C.L.
PDB entry 8gud: Cryo-EM structure of cancer-specific PI3Kalpha mutant E545K in complex with BYL-719
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2022-09-11
Authors: Liu, X., Zhou, Q., Hart, J.R., Xu, Y., Yang, S., Yang, D., Vogt, P.K., Wang, M.-W.
PDB entry 8gue: Crystal Structure of narbomycin-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238
Classification: OXIDOREDUCTASE
Source organism: Streptomyces venezuelae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2022-09-11
Authors: Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.
PDB entry 8guf: Crystal structure of cyclic B subunit of type II heat labile enterotoxin
Classification: RECOMBINATION
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2022-09-12
Authors: Peng, Y.J., Wu, C.Y., Sue, S.C.
PDB entry 8gug: Structure of VPA0770 toxin bound to VPA0769 antitoxin in Vibrio parahaemolyticus
Classification: TOXIN
Source organism: Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2022-09-12
Authors: Song, X.J., Zhang, Y., Xu, Y.Y., Lin, Z.
PDB entry 8guh: Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with Tris
Classification: TRANSFERASE
Source organism: Sphingobacterium multivorum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2022-09-12
Authors: Murakami, T., Takahashi, A., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.
PDB entry 8gui: Bre1-nucleosome complex (Model I)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2022-09-12
Authors: Onishi, S., Hamada, K., Sato, K., Nishizawa, T., Nureki, O., Ogata, K., Sengoku, T.
PDB entry 8guj: Bre1-nucleosome complex (Model II)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2022-09-12
Authors: Onishi, S., Sato, K., Hamada, K., Nishizawa, T., Nureki, O., Ogata, K., Sengoku, T.
PDB entry 8guk: Human nucleosome core particle (free form)
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2022-09-12
Authors: Onishi, S., Sato, K., Nishizawa, T., Nureki, O., Ogata, K., Sengoku, T.