LiteFold/PDB huggingface dataset:
PDB entry 9ydr: Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3983
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2025-09-23
Authors: Mobbs, J.I., Venugopal, H., Thal, D.M.
PDB entry 9ydu: UDPG bound P2Y14 Receptor in complex with Gi
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-09-23
Authors: Fay, J.F.
PDB entry 9ydv: MRS2905 bound P2Y14 Receptor in complex with Gi
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-09-23
Authors: Fay, J.F.
PDB entry 9ydy: C-terminal coiled coil dimer of human TACC3
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-09-23
Authors: Isiorho, E.A., Xu, X., Gardner, K.H.
PDB entry 9ydz: Cryo EM structure of KCa3.1_R355K_II/calmodulin channel in complex with rimtuzalcap
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-09-23
Authors: Nam, Y.W., Zhang, M.
PDB entry 9ye4: Crystal structure of the human DCAF1 WDR domain in complex with OICR-41110
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-09-23
Authors: kimani, S., Dong, A., Li, Y., Seitova, A., Mamai, A., Al-awar, R., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9ye9: Structure of UbcH5b in complex with the U-box domain of the E3 ubiquitin ligase CHIP
Classification: LIGASE
Source organism: Danio rerio; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2025-09-23
Authors: Manage, M.M., Nix, J.C., Page, R.C.
PDB entry 9yea: Structure of the isopeptide bond-linked UbcH5b~Ubiquitin conjugate complex for an M1K/C85K UbcH5b mutant
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-09-23
Authors: Manage, M.M., Nix, J.C., Page, R.C.
PDB entry 9yf5: N4 Empty Particle C6 Tail
Classification: VIRAL PROTEIN
Source organism: Escherichia phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2025-09-25
Authors: Bellis, N.F., Cingolani, G.
PDB entry 9yf8: N4 Full Virion Portal
Classification: VIRAL PROTEIN
Source organism: Escherichia phage N4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-09-25
Authors: Bellis, N.F., Cingolani, G.
PDB entry 9yfb: Crystal Structure UTP--glucose-1-phosphate uridylyltransferase from Bordetella pertussis in complex with UTP
Classification: TRANSFERASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-09-25
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yfi: Crystal Structure UTP--glucose-1-phosphate uridylyltransferase from Bordetella pertussis in complex with URIDINE-5'-DIPHOSPHATE-GLUCOSE
Classification: TRANSFERASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-09-26
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yfk: Crystal Structure UTP--glucose-1-phosphate uridylyltransferase from Bordetella pertussis in complex with URIDINE-5'-DIPHOSPHATE-GLUCOSE (twinned lattice)
Classification: TRANSFERASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-09-26
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yfl: insect H/ACA snoRNP class I
Classification: RNA BINDING PROTEIN
Source organism: Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-09-26
Authors: Panwar, H.S., Worden, E.W.
PDB entry 9yfm: insect H/ACA snoRNP class II composite
Classification: RNA BINDING PROTEIN
Source organism: Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-09-26
Authors: Panwar, H.S., Worden, E.W.
PDB entry 9yfn: insect H/ACA snoRNP class III
Classification: RNA BINDING PROTEIN
Source organism: Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-09-26
Authors: Panwar, H.S., Worden, E.W.
PDB entry 9yfo: insect H/ACA snoRNP class IV
Classification: RNA BINDING PROTEIN
Source organism: Trichoplusia ni
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-09-26
Authors: Panwar, H.S., Worden, E.W.
PDB entry 9yfr: perdeuterated human DJ-1, 100K
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.92 Å
Deposited: 2025-09-26
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9yfs: Protiated E. coli YajL, 100K
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 0.94 Å
Deposited: 2025-09-26
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9yfu: Structure of GPR61 bound to inverse agonist compound 15
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-09-26
Authors: Lees, J.A., Dias, J.M., Han, S.
PDB entry 9yfx: KrKA retaining Kdo transferase CMP complex
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-09-27
Authors: Govind, M., Kimber, M.S.
PDB entry 9yfy: KrkA D193C Kdo adduct
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-09-27
Authors: Govind, M., Kimber, M.S.
PDB entry 9yfz: KrkA D193C ternary complex
Classification: TRANSFERASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2025-09-27
Authors: Govind, M., Kimber, M.S.
PDB entry 9yg0: Targeting PTPN22 at non-orthosteric binding sites - a fragment approach
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2025-09-27
Authors: Di Lello, P., Wells, M.M.
PDB entry 9yg1: Targeting PTPN22 at non-orthosteric binding sites - a fragment approach
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-09-27
Authors: Di Lello, P., Wells, M.M.
PDB entry 9yg2: Targeting PTPN22 at non-orthosteric binding sites - a fragment approach
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2025-09-27
Authors: Di Lello, P., Wells, M.M.
PDB entry 9yg3: Targeting PTPN22 at non-orthosteric binding sites - a fragment approach
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-09-27
Authors: Di Lello, P., Wells, M.M.
PDB entry 9yg7: Crystal structure of Shewanella benthica group 1 truncated hemoglobin H24I/C51S/ C71S variant
Classification: UNKNOWN FUNCTION
Source organism: Shewanella benthica KT99
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-09-28
Authors: Schultz, T.D., Siegler, M.A., Schlessman, J.L., Lecomte, J.T.J.
PDB entry 9ygk: Crystal Structure UTP--glucose-1-phosphate uridylyltransferase from Bordetella pertussis (sulfate bound)
Classification: TRANSFERASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-09-29
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ygu: Flagella filament structure in H. pylori composed of flagellin FlaA
Classification: STRUCTURAL PROTEIN
Source organism: Helicobacter pylori B128
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-09-29
Authors: Kumar, R., Yu, H., Tachiyama, S., Liu, J.
PDB entry 9ygw: Perdeuterated E. coli YajL, 100K
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 0.88 Å
Deposited: 2025-09-29
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9ygx: I21T mutant human DJ-1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 0.97 Å
Deposited: 2025-09-29
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9ygy: Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-09-29
Authors: Yamsek, M., Jha, R., Keenan, R.J.
PDB entry 9yh1: Structure of flagellin FlaB filament in H. pylori
Classification: STRUCTURAL PROTEIN
Source organism: Helicobacter pylori B128
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2025-09-29
Authors: Kumar, R., Yu, H., Tachiyama, S., Liu, J.
PDB entry 9yh8: M17T Human DJ-1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1 Å
Deposited: 2025-09-30
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9yh9: Crystal structure of a phage catechol 1,2-dioxygenase identified from a soil metagenomic survey
Classification: OXIDOREDUCTASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-09-30
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yha: Cryo-EM structure of IDH1 R132H
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-09-30
Authors: Hu, L., Seo, H.-S., Dhe-Paganon, S., Berezuk, A.M., Tuttle, K.S., Zhu, X., Subramaniam, S., Wu, X.
PDB entry 9yhb: Cryo-EM structure of IDH1 R132H C269S
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-09-30
Authors: Hu, L., Seo, H.-S., Dhe-Paganon, S., Berezuk, A.M., Tuttle, K.S., Zhu, X., Subramaniam, S., Wu, X.
PDB entry 9yhc: Crystal structure of Chikungunya virus nsP3 macrodomain D31H mutant (P31 crystal form)
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhd: Crystal structure of Chikungunya virus nsP3 macrodomain D31N mutant (P41 crystal form) in complex with ADP-ribose
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhe: Crystal structure of Chikungunya virus nsP3 macrodomain D31N mutant (P31 crystal form)
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhf: Crystal structure of Chikungunya virus nsP3 macrodomain D31N mutant (P41 crystal form)
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.41 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhh: Crystal structure of Chikungunya virus nsP3 macrodomain N24A mutant (P31 crystal form) in complex with ADP-ribose
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhi: Crystal structure of Chikungunya virus nsP3 macrodomain N24A mutant (P31 crystal form)
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhj: Crystal structure of Chikungunya virus nsP3 macrodomain N24A D31H double mutant (P31 crystal form) in complex with ADP-ribose
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhk: Crystal structure of Chikungunya virus nsP3 macrodomain N24A D31H double mutant (P31 crystal form)
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhl: Crystal structure of Chikungunya virus nsP3 macrodomain N24A D31N double mutant (P31 crystal form) in complex with ADP-ribose
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhm: Crystal structure of Chikungunya virus nsP3 macrodomain N24A D31N double mutant (P31 crystal form)
Classification: VIRAL PROTEIN,HYDROLASE
Source organism: Chikungunya virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2025-09-30
Authors: Correy, G.J., Fraser, J.S.
PDB entry 9yhn: Hna Monomer
Classification: IMMUNE SYSTEM
Source organism: Sinorhizobium meliloti
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-09-30
Authors: Hooper, M.
PDB entry 9yhu: DNA ligase 1 E346A/E592A in complex with nick containing 3'-8oxorG:A captured at post-catalytic stage
Classification: LIGASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-10-01
Authors: KanalElamparithi, B., Caglayan, M.
PDB entry 9yhv: DNA ligase 1 E346A/E592A in complex with nick containing 3'-8oxorG:C captured at pre-catalytic stage
Classification: LIGASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2025-10-01
Authors: KanalElamparithi, B., Caglayan, M.
PDB entry 9yhw: DNA ligase 1 E346A/E592A in complex with nick containing 3'-8oxodG:A captured at pre-catalytic stage
Classification: LIGASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2025-10-01
Authors: KanalElamparithi, B., Caglayan, M.
PDB entry 9yhx: DNA ligase 1 E346A/E592A in complex with nick containing 3'-8oxodG:C captured at pre-catalytic stage
Classification: LIGASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.96 Å
Deposited: 2025-10-01
Authors: KanalElamparithi, B., Caglayan, M.
PDB entry 9yhy: DNA ligase 1 wild-type in complex with nick containing 3'-8oxodG:C captured at pre-catalytic stage
Classification: LIGASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2025-10-01
Authors: KanalElamparithi, B., Caglayan, M.
PDB entry 9yi2: Human EEPD1 EEP domain dimer
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-10-01
Authors: Liu, M., Shen, R., Tainer, J.
PDB entry 9yi3: Crystal structure of PprA S-F filament from Deinococcus radiodurans
Classification: DNA BINDING PROTEIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-10-01
Authors: Szabla, R., Junop, M.S.
PDB entry 9yi4: Octopus sensory receptor CRT1 bound to Progesterone
Classification: MEMBRANE PROTEIN
Source organism: Octopus bimaculoides
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-10-01
Authors: Jiang, H., Hibbs, R.E.
PDB entry 9yi5: Macrophage Migration Inhibitory Factor 2 from Heligmosomoides polygyrus
Classification: CYTOKINE
Source organism: Heligmosomoides polygyrus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.396 Å
Deposited: 2025-10-01
Authors: Orkwis, J.A., Lolis, E.J.
PDB entry 9yi6: Cryo-EM structure of yeast Mgm101 bound to 83-mer ssDNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-10-01
Authors: Wheat, C.T., Bell, C.E.
PDB entry 9yi7: Cryo-EM structure of yeast Mgm101 bound to duplex DNA annealing intermediate
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-10-01
Authors: Wheat, C.T., Bell, C.E.
PDB entry 9yi8: Cryo-EM structure of yeast Mgm101 bound to apparent B-form DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-10-01
Authors: Wheat, C.T., Bell, C.E.
PDB entry 9yi9: Cryo-EM structure of yeast Mgm101 in the lock-washer apo state
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-10-01
Authors: Wheat, C.T., Bell, C.E.
PDB entry 9yia: Cryo-EM structure of yeast Mgm101 in the ring apo state
Classification: DNA BINDING PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-10-01
Authors: Wheat, C.T., Bell, C.E.
PDB entry 9yic: Crystal structure of human IL-17A in complex with Compound 1
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2025-10-01
Authors: Armstrong, A.A., Milligan, C.M., Luo, J.
PDB entry 9yim: Capping protein bound to the barbed end of F-actin
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-10-01
Authors: Palmer, N.J., Dominguez, R.
PDB entry 9yin: Sf11 bacteriophage portal
Classification: VIRUS
Source organism: Shigella phage Sf11 SMD-2017
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-10-01
Authors: Subramanian, S., Parent, K.N.
PDB entry 9yio: Crystal structure of 5B3 Fab in complex with PvRipr EGF7-8
Classification: CELL INVASION
Source organism: Mus musculus; Plasmodium vivax
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-10-02
Authors: Xiao, X., Cowman, A.F., Scally, S.W.
PDB entry 9yis: Crystal structure of glutamate dehydrogenase from Babesia microti
Classification: OXIDOREDUCTASE
Source organism: Babesia microti strain RI
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18 Å
Deposited: 2025-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yit: Crystal structure of glutamate dehydrogenase from Babesia microti in complex with NADP
Classification: OXIDOREDUCTASE
Source organism: Babesia microti strain RI
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-10-02
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yiu: Macrophage Migration Inhibitory Factor 2 from Necator americanus
Classification: ISOMERASE
Source organism: Necator americanus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.726 Å
Deposited: 2025-10-02
Authors: Orkwis, J.A., Lolis, E.J., Manjula, R.
PDB entry 9yjl: Joint X-ray/neutron structure of wild-type Bacillus halodurans RNase H1 in the apo-form
Classification: HYDROLASE
Source organism: Halalkalibacterium halodurans
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-10-03
Authors: Kovalevsky, A., Gerlits, O.
PDB entry 9yjm: Joint X-ray/neutron structure of D132N Bacillus halodurans RNase H1 in the apo-form
Classification: HYDROLASE
Source organism: Halalkalibacterium halodurans
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2025-10-03
Authors: Kovalevsky, A., Gerlits, O.
PDB entry 9yjw: Transferrin Binding Protein A
Classification: TRANSPORT PROTEIN
Source organism: Neisseria meningitidis serogroup B
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-10-05
Authors: Dubey, S., Noinaj, N.
PDB entry 9yjz: cryoEM structure of Apo Aspergillus fumigatus acetolactate synthase (ALS)
Classification: PLANT PROTEIN
Source organism: Aspergillus fumigatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-10-06
Authors: Hu, Y.
PDB entry 9yk0: cryoEM structure of Aspergillus fumigatus acetolactate synthase (ALS) in complex with a novel inhibitor
Classification: PLANT PROTEIN
Source organism: Aspergillus fumigatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2025-10-06
Authors: Hu, Y.
PDB entry 9yk1: Room-temperature X-ray structure of D132N Bacillus halodurans RNase H1 in complex with RNA/DNA duplex
Classification: HYDROLASE/RNA/DNA
Source organism: Halalkalibacterium halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-10-06
Authors: Kovalevsky, A., Gerlits, O.
PDB entry 9yk2: Crystal structure of TEAD2 with non-covalent aryl ether inhibitor.
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-10-06
Authors: Palte, R.L., Eddins, M., Vara, B.A., Schneider, S.E.
PDB entry 9yk3: Room-temperature X-ray structure of D132N Bacillus halodurans RNase H1 in complex with complementary RNA/DNA duplex
Classification: HYDROLASE/RNA/DNA
Source organism: Halalkalibacterium halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-10-06
Authors: Kovalevsky, A., Gerlits, O.
PDB entry 9yk4: Crystal structure of CYP3A4 bound to imidazole and tetraethylene glycol
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2025-10-06
Authors: Sevrioukova, I.F.
PDB entry 9yk5: 100K X-ray structure of mixed metal D132N Bacillus halodurans RNase H1 complex with RNA/DNA duplex
Classification: HYDROLASE/RNA/DNA
Source organism: Halalkalibacterium halodurans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-10-06
Authors: Kovalevsky, A., Gerlits, O.
PDB entry 9yka: Cryo-EM structure of post-fusion EBV gB in complex with AMMO2 fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; human gammaherpesvirus 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-06
Authors: Chou, C.W., McCool, R.S., McLellan, J.S.
PDB entry 9ykb: The von Willebrand factor A domain of human capillary morphogenesis gene II, fused to the 1TEL crystallization chaperone, Ala-Val linker variant, expressed with SUMO tag.
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-10-06
Authors: Gajjar, P., Samarawickrama, P., Pedroza Romo, M.J., Keliiliki, A., Litchfield, C., Callahan, M., Redd, N., Doukov, T., Lebedev, A., Moody, J.D.
PDB entry 9ykc: Cryo-EM structure of GroEL-gammaATP
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-10-06
Authors: Zafar, H., Glass, K.C., Malone, K.L.
PDB entry 9yke: GroEL Apoenzyme
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-10-07
Authors: Zafar, H., Glass, K.C., Malone, K.L.
PDB entry 9ykf: Crystal Structure of E. coli D23N YajL
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 0.98 Å
Deposited: 2025-10-07
Authors: Lin, J., Kovalevsky, A., Walker, A.R., Wilson, M.A.
PDB entry 9yki: Crystal structure of human PIM1 kinase bound with CSH-4044 inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-10-07
Authors: Elkayam, E., Garg, A., Joshua-Tor, L.
PDB entry 9ykj: Hna Dimer
Classification: IMMUNE SYSTEM
Source organism: Sinorhizobium meliloti
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-10-07
Authors: Hooper, M.
PDB entry 9ykp: HIV-1 Protease WT (NL4-3) with Inhibitor NR01-141
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-10-07
Authors: Lockbaum, G.J., Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9ykx: Un-crosslinked hClpX
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-10-08
Authors: Chen, W.C.
PDB entry 9ykz: Un-crosslinked hClpP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-10-08
Authors: Chen, W.C.
PDB entry 9yl4: Crystal structure of PprA S-F filament from Deinococcus radiodurans
Classification: DNA BINDING PROTEIN
Source organism: Deinococcus radiodurans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2025-10-08
Authors: Szabla, R., Junop, M.S.
PDB entry 9yl5: Crystal Structure of 6,7-dimethyl-8-ribityllumazine synthase from Bordetella pertussis in complex with 5-amino-6-(D-ribitylamino)uracil
Classification: TRANSFERASE
Source organism: Bordetella pertussis Tohama I
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2025-10-08
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ylh: Human p38 ALPHA MAPK:MW01-8-105SRM N,N-Dimethyl-6-phenyl-5-(4-pyridinyl)-3-pyridazinamine inhibitor complex
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-10-08
Authors: Brunzelle, J.S., Shuvalova, L., Roy, S.M., Watterson, D.M.
PDB entry 9yll: BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (20-mer)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-10-08
Authors: Horton, J.R., Cheng, X.
PDB entry 9ylm: BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (12-mer)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-10-08
Authors: Horton, J.R., Cheng, X.
PDB entry 9yln: BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGGCCA (12-mer)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-10-08
Authors: Horton, J.R., Cheng, X.
PDB entry 9ylo: BCL11A ZF2-3 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (P21212 crystal form)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-10-08
Authors: Horton, J.R., Cheng, X.
PDB entry 9ylp: BCL11A ZF2-3 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGTCCA (C2221 Crystal Form)
Classification: TRANSCRIPTION/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-10-08
Authors: Horton, J.R., Cheng, X.
PDB entry 9ylu: cryoEM structure of CbCash filament with cA4 and tRNA Ile CAU
Classification: RNA BINDING PROTEIN
Source organism: Chloroflexi bacterium 13_1_20CM_2_59_7; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-10-09
Authors: Liu, Y., Weickert, P., Strecker, J.
PDB entry 9ylv: Cryo-EM structure of apo CbCash dodecamer
Classification: RNA BINDING PROTEIN
Source organism: Chloroflexia
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-10-09
Authors: Liu, Y., Weickert, P., Strecker, J.
PDB entry 9ylx: Cryo-EM structure of the CbCash filament bound to cA4
Classification: RNA BINDING PROTEIN
Source organism: Chloroflexia; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2025-10-09
Authors: Liu, Y., Weickert, P., Strecker, J.
PDB entry 9ylz: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with beta3Leu at Position 28
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ym0: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with ACPC at Position 28
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ym1: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with beta3Lys at Position 29
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ym2: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with ACPC at Position 29
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ym3: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with ACPC at Position 30
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ym4: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with beta3Phe at Position 6
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ym5: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with Calpha-methyl-Phe at Position 6
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ym6: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with Calpha-methyl-Phe at Position 17
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ym7: Backbone Modification in the Villin Headpiece Miniprotein: HP35 with Calpha-methyl-Phe at Positions 6 and 17, ACPC at Position 29
Classification: STRUCTURAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-10-09
Authors: Lin, Y., David, R.M., Amin, D.M., Osborne, S.W.J., Horne, W.S.
PDB entry 9ymg: Human KIF18A-DARPin fusion protein bound to AMP-PNP and tubulin
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.406 Å
Deposited: 2025-10-09
Authors: Lockbaum, G.J., Lee, Y.-T., Boriack-Sjodin, P.A., Grigoriu, S.
PDB entry 9ymm: Crystal structure of Glutamate--tRNA ligase (GltX) from Moraxella catarrhalis in complex with 5'-O-(N-Glutamyl)sulfamoyladeonosine
Classification: LIGASE
Source organism: Moraxella catarrhalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2025-10-10
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ymt: Staphylococcus aureus serine/threonine kinase Stk1 with inhibitor GW779439X
Classification: TRANSFERASE/INHIBITOR
Source organism: Staphylococcus aureus subsp. aureus N315
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-10-10
Authors: Mosimann, W.A., Strynadka, N.C.J., Worrall, L.J.
PDB entry 9ymu: De novo initial transcribing RNA polymerase with 2-mer RNA and bound CTP / Michaelis complex (RPitc2+CTP)
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-10-10
Authors: Mueller, A.U., Darst, S.A.
PDB entry 9ymv: De novo initial transcribing RNA polymerase with pretranslocated 3-mer RNA / product complex (RPitc3)
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-10-10
Authors: Mueller, A.U., Darst, S.A.
PDB entry 9ymw: De novo initial transcribing RNA polymerase with 5-mer RNA CCAUC (RPitc5a)
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-10-10
Authors: Mueller, A.U., Darst, S.A.
PDB entry 9ymx: De novo initial transcribing RNA polymerase with 5-mer RNA AUCUA (RPitc5b)
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-10-10
Authors: Mueller, A.U., Darst, S.A.
PDB entry 9ymy: De novo initial transcribing RNA polymerase with 9-mer RNA (RPitc9)
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-10-10
Authors: Mueller, A.U., Darst, S.A.
PDB entry 9yn0: De novo initial transcribing RNA polymerase with sigma 70 region 1.1 bound (RPitc-s70_1.1)
Classification: TRANSCRIPTION
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-10
Authors: Mueller, A.U., Darst, S.A.
PDB entry 9yn9: Crystal structure of nucleoside-diphosphate kinase Cryptosporidium parvum (GMP complex)
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2025-10-10
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9ync: Motor domains of phi-like human dynein-1 bound to dynactin-p150glued and LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2025-10-10
Authors: Yang, J., Rao, Q., Chai, P., Zhang, K.
PDB entry 9ynd: Motor domain of human dynein-1 in pre-power stroke bound to dynactin-p150glued-CC1B and LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.26 Å
Deposited: 2025-10-10
Authors: Yang, J., Rao, Q., Chai, P., Zhang, K.
PDB entry 9yne: Motor domain of human dynein-1 in pre-power stroke bound to dynactin-p150glued-CC1B-ICD and LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.46 Å
Deposited: 2025-10-10
Authors: Yang, J., Rao, Q., Chai, P., Zhang, K.
PDB entry 9ynf: Motor domain of human dynein-1 in post1 state
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Deposited: 2025-10-10
Authors: Yang, J., Rao, Q., Chai, P., Zhang, K.
PDB entry 9yng: Dynactin and dynein-1 tail region of dynein-dynactin complex on microtubule in the presence of LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.07 Å
Deposited: 2025-10-10
Authors: Yang, J., Rao, Q., Chai, P., Zhang, K.
PDB entry 9ynh: Full-length human cytoplasmic dynein-1 in phi-like state bound to dynactin-p150glued and LIS1
Classification: MOTOR PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2025-10-10
Authors: Yang, J., Rao, Q., Chai, P., Zhang, K.
PDB entry 9ynj: Cryo-EM structure of GroEL-ADP
Classification: CHAPERONE
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-10-10
Authors: Zafar, H., Glass, K.C., Malone, K.L.
PDB entry 9ynp: Cryo-EM structure of Escherichia coli transcription initiation complex with GpA and pseudouridimycin (PUM)
Classification: TRANSCRIPTION, TRANSFERASE/DNA/RNA/INHIBITOR
Source organism: Escherichia coli str. K-12 substr. MG1655; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-10-11
Authors: You, L.L., Ebright, R.H.
PDB entry 9ynq: Cryo-EM structure of Escherichia coli transcription initiation complex with GpA and des-hydroxy pseudouridimycin (des-hydroxy PUM)
Classification: TRANSFERASE/DNA/RNA/INHIBITOR
Source organism: Escherichia coli str. K-12 substr. MG1655; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-10-11
Authors: You, L.L., Ebright, R.H.
PDB entry 9ynr: Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2025-10-12
Authors: Wang, Y., Hu, Y., Leiman, P., Xie, X.
PDB entry 9ynu: Tra1 and core modules including core tip of ctSAGA complex
Classification: TRANSCRIPTION
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-10-12
Authors: Mattoo, R.U.H., Chen, D.H., Bushnell, D.A., Tamir, S., Kornberg, R.D.
PDB entry 9ynv: Histone Acetyl Transferase (HAT) module of ctSAGA
Classification: TRANSCRIPTION
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-10-12
Authors: Mattoo, R.U.H., Chen, D.H., Bushnell, D.A., Tamir, S., Kornberg, R.D.
PDB entry 9ynw: Tra1, Core and minimal HAT modules of ctSAGA, composite.
Classification: TRANSCRIPTION
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-10-12
Authors: Mattoo, R.U.H., Chen, D.H., Bushnell, D.A., Tamir, S., Kornberg, R.D.
PDB entry 9ynx: Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, Subgroup I conformation
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2025-10-12
Authors: Wang, Y., Hu, Y., Leiman, P., Xie, X.
PDB entry 9ynz: Human PU.1 ETS-Domain (165-270) Bound to d(5'-AATAAGCGGAAGTGGG-3') d(5'-TCCCACT*CPD*CGCTTAT-3')
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-10-13
Authors: Terrell, J.R., Poon, G.M.K.
PDB entry 9yok: Fab-14/SARS-CoV-2 D614G spike complex, Mode I conformation
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2025-10-13
Authors: Wang, Y., Hu, Y., Leiman, P., Xie, X.
PDB entry 9yol: Tra1 module of ctSAGA
Classification: TRANSCRIPTION
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-10-13
Authors: Mattoo, R.U.H., Chen, D.H., Bushnell, D.A., Tamir, S., Kornberg, R.D.
PDB entry 9yon: Crystal structure of Prolyl-tRNA synthetase (ProRS, Proline--tRNA ligase) from Plasmodium falciparum in complex with inhibitor YNW69
Classification: LIGASE
Source organism: Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-10-13
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9yop: Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH docked state
Classification: CONTRACTILE PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Mus musculus; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-10-13
Authors: Somavarapu, A.K., Ge, J., Yengo, C.M., Craig, R., Padron, R.
PDB entry 9yoq: Core module of ctSAGA
Classification: TRANSCRIPTION
Source organism: Thermochaetoides thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-10-13
Authors: Mattoo, R.U.H., Chen, D.H., Bushnell, D.A., Tamir, S., Kornberg, R.D.
PDB entry 9yp1: Rabbit Hemorrhagic Disease Virus Czech P domain
Classification: VIRAL PROTEIN
Source organism: Rabbit hemorrhagic disease virus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.37 Å
Deposited: 2025-10-13
Authors: Kara, D., Pancera, M., Hansman, G.
PDB entry 9yp2: Structure of HaCV P domain in complex with Nanobody 7
Classification: VIRAL PROTEIN
Source organism: Hare calicivirus; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2025-10-13
Authors: Kara, D., Pancera, M., Hansman, G.
PDB entry 9yp4: Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH docked state
Classification: CONTRACTILE PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Mus musculus; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2025-10-13
Authors: Somavarapu, A.K., Craig, R., Padron, R.
PDB entry 9yp6: Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-10-13
Authors: Tamayo-Jaramillo, D., Shen, P.S.
PDB entry 9yp8: Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-10-13
Authors: Tamayo-Jaramillo, D., Shen, P.S.
PDB entry 9yp9: Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH docked state
Classification: CONTRACTILE PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Mus musculus; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-13
Authors: Somavarapu, A.K., Ge, J., Yengo, C.M., Craig, R., Padron, R.
PDB entry 9ypb: Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup II conformation
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-10-13
Authors: Wang, Y., Hu, Y., Leiman, P., Xie, X.
PDB entry 9ypg: GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9ypo: GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9ypr: Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup I conformation
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-10-14
Authors: Wang, Y., Hu, Y., Leiman, P., Xie, X.
PDB entry 9yps: GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9ypt: GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9ypv: GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9ypw: GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9ypy: Ribosome with accommodated A-site tRNA, Structure V
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9ypz: Vacant ribosome with P-site tRNA, substate 1, Structure Ia
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9yq0: Vacant ribosome with P-site tRNA, substate 2, Structure Ib
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9yq1: Vacant ribosome with P-site tRNA, substate 3, Structure Ic
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-14
Authors: Susorov, D., Korostelev, A.A.
PDB entry 9yq2: Chlorella virus hyaluronan synthase bound to DDM
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Lama glama; Paramecium bursaria Chlorella virus CZ-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-10-15
Authors: Stephens, Z., Zimmer, J.
PDB entry 9yq4: Chlorella virus hyaluronan synthase bound to a proofreading UDP-GlcA
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Lama glama; Paramecium bursaria Chlorella virus CZ-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-10-15
Authors: Stephens, Z., Zimmer, J.
PDB entry 9yq5: Chlorella virus hyaluronan synthase bound to an inserted UDP-GlcA
Classification: TRANSFERASE/IMMUNE SYSTEM
Source organism: Lama glama; Paramecium bursaria Chlorella virus CZ-2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-10-15
Authors: Stephens, Z., Zimmer, J.
PDB entry 9yqo: AMC008 v4.2 SOSIP Env trimer in complex with PGT121 and VRC01 Fabs
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-10-15
Authors: Cui, J., Du, J., Lin, Z., Pallesen, J.
PDB entry 9yr6: Structure of HTTQ23-HAP40 complex bound to a small molecule ligand
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-10-16
Authors: Balakrishnan, S., Deme, J., Lea, S.M., Harding, R.J.
PDB entry 9yr7: Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH undocked state
Classification: CONTRACTILE PROTEIN
Source organism: Aequorea victoria; Homo sapiens; Mus musculus; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-16
Authors: Somavarapu, A.K., Ge, J., Yengo, C.M., Craig, R., Padron, R.
PDB entry 9yr9: Structure of human MARK3 in complex with inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.402 Å
Deposited: 2025-10-16
Authors: Mao, D.Y.L., Ogunjimi, A.A., Pau, V., Chini, F.D., Sicheri, F.
PDB entry 9yra: HIV-1 Protease WT (NL4-3) in Complex with NR02-79
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-10-16
Authors: Lockbaum, G.J., Kaur, J., Shaqra, A.M., Schiffer, C.A.