LiteFold/PDB huggingface dataset:
PDB entry 9wx7: Structure of the L-proline-free human proline transporter purified in DDM/CHS buffer
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2025-09-24
Authors: Wu, J.X., Zhou, Y., Wang, N.Q., Wang, J.Q.
PDB entry 9wx9: Structure of the L-proline-free human proline transporter purified in DDM buffer
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-09-25
Authors: Wu, J.X., Zhou, Y., Wang, N.Q., Wang, J.Q.
PDB entry 9wxk: Linear fragment of lycosin9I with anti-MRSA activity
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2025-09-25
Authors: Mironov, P.A., Dubovskii, P.V., Shenkarev, Z.O.
PDB entry 9wxm: Cryo-EM structure of the full-length GPR15L bound GPR15-Gi complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-09-25
Authors: Han, S., Wu, B., Zhao, Q.
PDB entry 9wxr: sensory rhodopsin I with its cognate transducer HtrI
Classification: SIGNALING PROTEIN
Source organism: Haloarcula taiwanensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2025-09-25
Authors: Lim, G.Z., Lin, Y.E., Wu, Y.M., Chen, P.C., Fu, H.Y., Yang, C.S.
PDB entry 9wxs: Silver-bound E.coli Malate dehydrogenase (C251S)
Classification: CYTOSOLIC PROTEIN
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-09-25
Authors: Wang, H., Wang, M., Sun, H.
PDB entry 9wxv: Cryo-EM structure of TMEM63A-digitonin-cholesterol
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2025-09-26
Authors: Lin, Y., Zhou, Z., Han, Y., Cheng, D., Wang, H., Ju, L., Zhang, Y., Cox, D.C., Corry, B.
PDB entry 9wy1: Cryo-EM structure of Fks1 in apo state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-09-26
Authors: You, Z.L., Bai, L.
PDB entry 9wy3: Crystal structure of Frog M-ferritin E130A_L165D mutant
Classification: METAL TRANSPORT
Source organism: Aquarana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-09-26
Authors: Jagdev, M.K., Vasudevan, D.
PDB entry 9wy8: Cryo-EM structure of the hexameric DRT6
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli; Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-09-26
Authors: Wang, Y., Deng, Z.
PDB entry 9wyd: Crystal structure of HAstV8 spike and FcRn
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human astrovirus-8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-09-26
Authors: Wang, W., Xu, Y., Zhang, S.J.
PDB entry 9wye: Crystal structure of HAstV1 spike
Classification: VIRAL PROTEIN
Source organism: Human astrovirus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2025-09-26
Authors: Wang, W., Xu, Y., Zhang, S.
PDB entry 9wyf: Crystal structure of the TC domain of a bifunctional sesterterpene synthase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus stellatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-09-26
Authors: Lei, Z.Y., Ma, M.
PDB entry 9wyg: Crystal structure of HAstV8 spike
Classification: VIRAL PROTEIN
Source organism: Human astrovirus-8
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2025-09-26
Authors: Wang, W., Xu, Y., Zhang, S.J.
PDB entry 9wyp: The PSI-ACPI supercomplex from the cryptophyte Chroomonas placoidea
Classification: PHOTOSYNTHESIS
Source organism: Chroomonas placoidea
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å
Deposited: 2025-09-27
Authors: Li, X.Y., Mao, Z.Y., Han, G.Y.
PDB entry 9wyq: Structural basis of signal activation and transduction by chitin elicitor receptor kinase 1 in Oryza sativa
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-09-27
Authors: Su, Z.H., Ming, Z.H.
PDB entry 9wyr: Structural basis of signal activation and transduction by chitin elicitor receptor kinase 1 in Oryza sativa
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.552 Å
Deposited: 2025-09-27
Authors: Su, Z.H., Ming, Z.H.
PDB entry 9wys: Structural basis of signal activation and transduction by chitin elicitor receptor kinase 1 in Oryza sativa
Classification: TRANSFERASE
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.79 Å
Deposited: 2025-09-27
Authors: Su, Z.H., Ming, Z.H.
PDB entry 9wyt: Cryo-EM structure of the IgY-FcRY complex
Classification: IMMUNE SYSTEM
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-09-27
Authors: Deng, M., Du, S., Xiao, J.
PDB entry 9wyv: Cryo-EM structure of EvAS
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-09-28
Authors: Lyu, R.Q., Bai, L.
PDB entry 9wyx: Cryo-EM structure of PbSS
Classification: BIOSYNTHETIC PROTEIN
Source organism: Penicillium brasilianum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2025-09-28
Authors: Bai, L., Lyu, R.Q.
PDB entry 9wz3: Cryo-EM structure of the PT domain of EvSS
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-09-29
Authors: Bai, L., Lyu, R.Q.
PDB entry 9wz4: Full-length ASC-PYD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wz5: Full-length ASC-CARD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wz6: Full-length Caspase-1-CARD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wz7: Full-length ASCb filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wz8: Full-length ASC-GFP PYD-filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wzb: K21E/K22E-ASC CARD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wzc: R41E-ASC CARD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wzd: R125E-ASC PYD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wzg: Full-length ASC-PYD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.41 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wzh: Full-length ASC-CARD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wzi: Full-length Caspase-1-CARD filament
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-09-29
Authors: Xue, D., Ni, F., Liu, S., Yan, H., Luo, Z., Fu, G., Wang, Q., Ma, J.
PDB entry 9wzk: Crystal structure of the inactive mutant of rice protein disulfide isomerase-like protein OsPDIL2-3 a-b domains
Classification: PLANT PROTEIN
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-09-29
Authors: Fujimoto, Z., Sakurai, M., Kishine, N., Kawagoe, Y.
PDB entry 9wzl: Crystal structure of rice protein disulfide isomerase-like protein OsPDIL2-3 a-b domain
Classification: PLANT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-09-29
Authors: Fujimoto, Z., Sakurai, M., Kishine, N., Kawagoe, Y.
PDB entry 9wzm: Crystal structure of rice protein disulfide isomerase-like protein OsPDIL2-3 a0 domain
Classification: PLANT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-09-29
Authors: Fujimoto, Z., Sakurai, M., Kishine, N., Kawagoe, Y.
PDB entry 9wzs: Cryo-EM structure of Fks2 in complex with enfumafungin
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-09-29
Authors: Bai, L., Wang, L.X.
PDB entry 9wzt: Cryo-EM structure of Fks2 in apo state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2025-09-29
Authors: Bai, L., You, Z.L.
PDB entry 9wzu: Cryo-EM structure of Fks1 in complex with enfumafungin
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-09-29
Authors: Bai, L., Wang, L.X.
PDB entry 9wzv: Cryo-EM structure of Fks1 with intact active site
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2025-09-29
Authors: Bai, L., Wang, L.X.
PDB entry 9wzx: Cryo-EM structure of Fks1 in open state
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.72 Å
Deposited: 2025-09-29
Authors: Bai, L., You, Z.L.
PDB entry 9x04: Cryo-EM structure of Fks2 with intact active site
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-09-29
Authors: Wang, L.X., Bai, L.
PDB entry 9x05: IL-33 and Itepekimab fab and Tozorakimab fab ternary complex structure
Classification: CYTOKINE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2025-09-29
Authors: Wang, X.Q., Wang, Y.
PDB entry 9x07: Serial Femtosecond Crystallography Structure of Myoglobin from equine skeletal muscle
Classification: OXYGEN STORAGE
Source organism: Equus caballus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-09-30
Authors: Nam, K.H.
PDB entry 9x0f: Cryo-EM structure of EvSS
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus stellatus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2025-09-30
Authors: Bai, L., Lyu, R.Q.
PDB entry 9x0i: Glyoxysomal Citrate Synthase 3 from Arabidopsis thaliana in complex with OAA and CoA
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-09-30
Authors: Nishio, K., Takagi, K., Mizushima, T.
PDB entry 9x0j: IL-33 and Etokimab fab and Tozorakimab fab ternary complex structure
Classification: CYTOKINE/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2025-09-30
Authors: Wang, X.Q., Wang, Y.
PDB entry 9x0v: Crystal structure of Frog M-ferritin E130A_M161E_L165D mutant
Classification: METAL TRANSPORT
Source organism: Aquarana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-09-30
Authors: Jagdev, M.K., Vasudevan, D.
PDB entry 9x15: Crystal structure of Frog M-ferritin E130A_L165D_K168E_H169D mutants
Classification: METAL BINDING PROTEIN
Source organism: Aquarana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-10-01
Authors: Jagdev, M.K., Vasudevan, D.
PDB entry 9x16: Crystal structure of Frog M-ferritin E130A_M161Q_L165D_K168E_H169D mutant
Classification: METAL TRANSPORT
Source organism: Aquarana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-10-01
Authors: Jagdev, M.K., Vasudevan, D.
PDB entry 9x1g: Crystal structure of Frog M-ferritin WT_M161Q_L165D_K168E_H169D mutant
Classification: METAL TRANSPORT
Source organism: Aquarana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-10-02
Authors: Jagdev, M.K., Vasudevan, D.
PDB entry 9x1h: Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-10-02
Authors: Kawauchi, H., Adrian, H., Gupta, G., Koga, H., Fujii, T., Fukumura, T., Ishino, S., Irie, M., Torizawa, T.
PDB entry 9x1i: Structure of endo-beta-N-acetylglucosaminidase HS
Classification: HYDROLASE
Source organism: human oral metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-10-02
Authors: Kurauchi, I., Okura, K., Hosokawa, C., Ito, K., Miyahra, I.
PDB entry 9x1l: The cryo-EM structure of HerA-NurA complex with AMPPNP from Thermococcus kodakarensis
Classification: TRANSLOCASE
Source organism: Thermococcus kodakarensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-10-02
Authors: Uda, K., Numata, T.
PDB entry 9x1m: The cryo-EM structure of HerA-NurA complex with AMPPNP and dsDNA from Thermococcus kodakarensis
Classification: DNA BINDING PROTEIN
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-10-02
Authors: Uda, K., Numata, T.
PDB entry 9x1n: The cryo-EM structure of HerA-NurA complex with ATPgammaS and dsDNA from Thermococcus kodakarensis (State 1)
Classification: DNA BINDING PROTEIN
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-10-02
Authors: Uda, K., Numata, T.
PDB entry 9x1o: The cryo-EM structure of HerA-NurA complex with ATPgammaS and dsDNA from Thermococcus kodakarensis (State 2)
Classification: DNA BINDING PROTEIN
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-02
Authors: Uda, K., Numata, T.
PDB entry 9x1p: The cryo-EM structure of HerA-NurA complex with ATPgammaS and dsDNA from Thermococcus kodakarensis (State 3)
Classification: DNA BINDING PROTEIN
Source organism: Thermococcus kodakarensis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-10-02
Authors: Uda, K., Numata, T.
PDB entry 9x1w: Crystal structure of de novo designed complement C9 mini-inhibitor form 1
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2025-10-03
Authors: Yu, B.
PDB entry 9x1x: Crystal structure of de novo designed complement C9 mini-inhibitor form 2
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-10-03
Authors: Yu, B.
PDB entry 9x22: Cryo-EM structure of the GLP-1-bound human GLP-1R-Gq complex
Classification: SIGNALING PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-10-03
Authors: Zhou, Q.T., Zhou, Q.T.
PDB entry 9x25: Target analog-bound type III-B Cmr complex of Archaeoglobus fulgidus
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Archaeoglobus fulgidus DSM 4304; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-10-03
Authors: Ishihara, K., Numata, T.
PDB entry 9x29: Cryo-EM structure of PsoA in cofactor bound state (PsoA-PKS-I)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus Af293
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-10-04
Authors: Sun, L., Bai, L.
PDB entry 9x2a: Cryo-EM structure of PsoA in cofactor bound state (PsoA-PKS-II)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus Af293
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-10-04
Authors: Sun, L., Bai, L.
PDB entry 9x2b: Cryo-EM structure of PsoA in apo state (PsoA-PKS-II)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus Af293
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2025-10-04
Authors: Sun, L., Bai, L.
PDB entry 9x2c: Cryo-EM structure of PsoA in apo state (PsoA-PKS-I)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-10-04
Authors: Sun, L., Bai, L.
PDB entry 9x2m: Gut transporter with sorbitol
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2025-10-06
Authors: Deng, T., Ge, X., Wang, J.
PDB entry 9x2o: X-ray structure of antiviral protein from Mirabilis jalapa
Classification: ANTIVIRAL PROTEIN
Source organism: Mirabilis jalapa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-10-07
Authors: Nishida, N., Ninomiya, Y., Yoshida, T., Habuka, N., Tsuge, H.
PDB entry 9x2q: GSK3beta complexed with BiS-1
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-10-07
Authors: Haslboeck, S., Vinogradov, A.A., Okada, C., Aikawa, H., Suga, H., Sengoku, T.
PDB entry 9x2u: GSK3beta complexed with BiS-2
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-10-08
Authors: Haslboeck, S., Vinogradov, A., Okada, C., Aikawa, H., Suga, H., Sengoku, T.
PDB entry 9x2v: GSK3beta complexed with BiS-3
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-10-08
Authors: Haslboeck, S., Vinogradov, A., Okada, C., Aikawa, H., Suga, H., Sengoku, T.
PDB entry 9x2w: GSK3beta complexed with BiS-4
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-10-08
Authors: Haslboeck, S., Vinogradov, A., Okada, C., Aikawa, H., Suga, H., Sengoku, T.
PDB entry 9x2x: GSK3beta complexed with BiS-5
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-10-08
Authors: Haslboeck, S., Vinogradov, A., Okada, C., Aikawa, H., Suga, H., Sengoku, T.
PDB entry 9x2y: GSK3beta complexed with BiS-8
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-10-08
Authors: Haslboeck, S., Vinogradov, A., Okada, C., Aikawa, H., Suga, H., Sengoku, T.
PDB entry 9x3m: Crystal structure of Pseudopedobacter saltans GH43 beta-xylosidase in complex with xylose.
Classification: HYDROLASE
Source organism: Pseudopedobacter saltans DSM 12145
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-10-09
Authors: Vishwakarma, P., Sachdeva, E., Ethayathulla, A.S., Goyal, A., Singh, T.P., Kaur, P.
PDB entry 9x3y: NPFF bound Mas1 Receptor
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-10-09
Authors: Zhang, Y.M., Liu, H., Xu, H.E.
PDB entry 9x3z: NPFF bound Mas1 Receptor Complex
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2025-10-09
Authors: Zhang, Y.M., Liu, H., Xu, H.E.
PDB entry 9x43: Crystal structure of glycosyltransferase UGT73C1 in complex with UDP and quercetin
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.081 Å
Deposited: 2025-10-10
Authors: Chen, X., Shi, M.W., Bi, J.H., Jia, K.Z.
PDB entry 9x45: Cryo-EM structure of renal amyloid fibril from an immunoglobulin light chain amyloidosis patient in polymorph A
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-10-10
Authors: Zhao, K., Yu, C.Y., Ma, Y.Y., Huang, H.
PDB entry 9x53: Crystal structure of RhoGDI2 in complex with Compound HR3119
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-10-12
Authors: Liu, M., Ruan, K.
PDB entry 9x54: Crystal structure of RhoGDI2 in complex with Compound 3054b
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2025-10-12
Authors: Liu, M., Ruan, K.
PDB entry 9x55: Crystal structure of RhoGDI2 in complex with Compound 3054a
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-10-12
Authors: Liu, M., Ruan, K.
PDB entry 9x56: Crystal structure of RhoGDI2 in complex with Compound 2542
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-10-12
Authors: Liu, M., Ruan, K.
PDB entry 9x57: The LBD-TMD structure of GluA4-1D8 complex
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-10-12
Authors: Li, X., Li, R., Wei, Y., Zhao, Y.
PDB entry 9x58: The GluA4-ATD in Complex with the 1D8-Fab
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-10-12
Authors: Li, X., Li, R., Wei, Y., Zhao, Y.
PDB entry 9x59: Crystal structure of RhoGDI2 in complex with Compound 2102
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-10-12
Authors: Liu, M., Ruan, K.
PDB entry 9x5u: Arabidopsis thaliana URE transporter DUR3 - URE bound
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-10-14
Authors: Wang, Y.L., Lin, H.J., Zhang, J.R., Fan, M.R.
PDB entry 9x5w: B/Brisbane/60/2008 HA in complex with BP-1A
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza B virus (B/Brisbane/60/2008)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-10-14
Authors: Nguyen, V.H.T., Ma, C.
PDB entry 9x5x: B/Brisbane/60/2008 HA in complex with FV2DP1-1B
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza B virus (B/Brisbane/60/2008)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-10-14
Authors: Nguyen, V.H.T., Ma, C.
PDB entry 9x5y: B/Brisbane/60/2008 HA in complex with BO-6B
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza B virus (B/Brisbane/60/2008)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2025-10-14
Authors: Nguyen, V.H.T., Ma, C.
PDB entry 9x5z: B/Phuket/3073/2013-like HA in complex with BP-1A
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-10-14
Authors: Nguyen, V.H.T., Ma, C.
PDB entry 9x60: B/Hubei-Wujiagang/158/2009 HA in complex with FV2DP1-1B
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza B virus (B/Hubei-Wujiagang/158/2009)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2025-10-14
Authors: Nguyen, V.H.T., Ma, C.
PDB entry 9x61: B/Hubei-Wujiagang/158/2009 HA in complex with BO-6B
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza B virus (B/Hubei-Wujiagang/158/2009)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2025-10-14
Authors: Nguyen, V.H.T., Ma, C.
PDB entry 9x67: Cryo-EM structure of the type I pilus from Escherichia Coli and the surrounding water network
Classification: CELL ADHESION
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.85 Å
Deposited: 2025-10-15
Authors: Petrova, T.E., Glukhov, A.S., Stetsenko, A., Guskov, A., Gabdulkhakov, A.G.
PDB entry 9x69: The structure of phycobilisome with a bicylindrical core from the cyanobacterium Synechococcus elongatus PCC 7942
Classification: ELECTRON TRANSPORT
Source organism: Synechococcus elongatus PCC 7942 = FACHB-805
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-10-15
Authors: Zheng, Z.G., Ma, C.Y., Wang, H.R., Wang, G.P., Dong, C.X., Gao, N., Zhao, J.D.
PDB entry 9x6a: carboxylesterase EstC
Classification: HYDROLASE
Source organism: Streptomyces lividans TK24
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-10-15
Authors: Chen, Q., Li, B.
PDB entry 9x6b: Cryo-EM structure of the Azoarcus sp. BH72 pre-tRNA(ILE) intron after second-step cyclization (circular form)
Classification: RNA
Source organism: Azoarcus olearius
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-10-15
Authors: Hong, Y., Liu, J.S., Zhang, K., Li, S.
PDB entry 9x6d: The cryo-EM structure of phycobilisome rod from Synechococcus elongatus PCC 7942
Classification: ELECTRON TRANSPORT
Source organism: Synechococcus elongatus PCC 7942 = FACHB-805
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-10-15
Authors: Zheng, Z.G., Ma, C.Y., Wang, H.R., Wang, G.P., Dong, C.X., Gao, N., Zhao, J.D.
PDB entry 9x6i: Crystal structure of L-threonate 3-dehydrogenase from Paracoccus litorisediminis (ligand-free form)
Classification: OXIDOREDUCTASE
Source organism: Paracoccus litorisediminis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-10-15
Authors: Watanabe, S., Sato, H.
PDB entry 9x6l: Crystal structure of Klebsiella oxytoca ribitol dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-10-15
Authors: Yoshida, H., Yoshihara, A.
PDB entry 9x6m: Crystal structure of Klebsiella oxytoca ribitol dehydrogenase in complex with D-allose
Classification: OXIDOREDUCTASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-10-15
Authors: Yoshida, H., Yoshihara, A.
PDB entry 9x6n: Crystal structure of Klebsiella oxytoca ribitol dehydrogenase in complex with D-allulose
Classification: OXIDOREDUCTASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-10-15
Authors: Yoshida, H., Yoshihara, A.
PDB entry 9x6o: Crystal structure of Klebsiella oxytoca ribitol dehydrogenase in complex with NAD+
Classification: OXIDOREDUCTASE
Source organism: Klebsiella oxytoca
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-10-15
Authors: Yoshida, H., Yoshihara, A.
PDB entry 9x6q: Crystal structure of the Songling virus nucleoprotein
Classification: VIRAL PROTEIN
Source organism: Orthonairovirus songlingense
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2025-10-15
Authors: Yanshin, A.O., Gladysheva, A.V.
PDB entry 9x6r: Crystal structure of Frog M-ferritin E130A_K168E_H169D mutant
Classification: METAL TRANSPORT
Source organism: Aquarana catesbeiana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-10-15
Authors: Jagdev, M.K., Vasudevan, D.
PDB entry 9x6w: Crystal structure of NodD-EBD (Effector Binding Domain) from Rhizobium leguminosarum bv. vicae 3841
Classification: TRANSCRIPTION
Source organism: Rhizobium leguminosarum
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2025-10-16
Authors: Ruan, Y., Dong, S., Zhang, Y., Murray, J.
PDB entry 9x6x: Hsp90a N-terminal domain
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-10-16
Authors: Wan, C.J.
PDB entry 9x70: Hsp90a T36E N-terminal domain
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-10-16
Authors: Wan, C.J.
PDB entry 9x71: the closed-form Hsp90a NTD
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-10-16
Authors: Wan, C.J.
PDB entry 9x72: closed-form Hsp90a T36E N-terminal domain
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-10-16
Authors: Wan, C.J.
PDB entry 9x73: Hsp90a T115E N-terminal domain
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-10-16
Authors: Wan, C.J.
PDB entry 9x7c: Crystal Structure of BRD2 BD1 domain in complex with small molecule inhibitor Mivebresib ABBV-075
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-10-16
Authors: Jwala, N., Chandrasekhar, A., NarasimhaRao, K.
PDB entry 9x7d: Crystal structure of PDCoV 3CL protease (3CLpro) in complex with nirmatrelvir
Classification: VIRAL PROTEIN
Source organism: Porcine deltacoronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-10-16
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9x7e: Crystal of CCoV-HuPn-2018 3CL protease (3CLpro) in complex with nirmatrelvir
Classification: VIRAL PROTEIN
Source organism: Canine coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-10-16
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9x7f: Crystal structure of PDCoV 3CL protease (3CLpro) in complex with compound 1
Classification: VIRAL PROTEIN
Source organism: Porcine deltacoronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2025-10-16
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9x7g: Crystal structure of PDCoV 3CL protease (3CLpro) in complex with compound 3
Classification: VIRAL PROTEIN
Source organism: Porcine deltacoronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2025-10-16
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9x7h: Crystal structure of PDCoV 3CL protease (3CLpro) in complex with compound 6
Classification: VIRAL PROTEIN
Source organism: Porcine deltacoronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2025-10-16
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9x7i: Crystal of CCoV-HuPn-2018 3CL protease (3CLpro) in complex with compound 3
Classification: VIRAL PROTEIN
Source organism: Canine coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2025-10-16
Authors: Nie, T.Q., Su, H.X., Li, M.J., Xu, Y.C.
PDB entry 9x7k: core filament of the spirochete periplasmic flagella of Leptospira biflexa wild type
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.35 Å
Deposited: 2025-10-17
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9x7l: core filament of the spirochete periplasmic flagella of Leptospira biflexa from the flaA2-complemented stain
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-10-17
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9x7m: core filament of the spirochete periplasmic flagella of Leptospira biflexa from the deleted fcpB_CL13 strain
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-10-17
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9x7s: sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa from the flaA2-complemented stain
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-10-17
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9x7v: Sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa from the deleted fcpB_CL13 strain
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-10-17
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9x80: sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa wild type
Classification: MOTOR PROTEIN
Source organism: Leptospira biflexa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2025-10-18
Authors: Kawamoto, A., Nakamura, S., Koizumi, N.
PDB entry 9x81: Crystal structure of the C-terminal of an alpha-amylase family glycosyl hydrolase from Vibrio parahaemolyticus
Classification: HYDROLASE
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-10-18
Authors: Cheng, Q., Li, B.
PDB entry 9x86: Crystal Structure of dehydratase ApmL in Amipurimycin biosynthesis
Classification: LYASE
Source organism: Streptomyces novoguineensis
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-10-18
Authors: Wang, W., Sun, A.
PDB entry 9x8f: Crystal structure of the N-terminal of an alpha-amylase family glycosyl hydrolase from Vibrio parahaemolyticus
Classification: HYDROLASE
Source organism: Vibrio parahaemolyticus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-10-19
Authors: Cheng, Q., Li, B.
PDB entry 9x8s: Crystal structure of the human GAS41 YEATS domain in complex with an acetylated YFV capsid peptide (K4ac)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.696 Å
Deposited: 2025-10-20
Authors: Chen, S.D.C., Kang, S.S.K.
PDB entry 9x8u: Crystal structure of the human GAS41 YEATS domain in complex with an acetylated YFV capsid peptide (K8ac)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.001 Å
Deposited: 2025-10-20
Authors: Chen, S.D.C., Kang, S.S.K.
PDB entry 9x8x: Cryo-EM Structure of G6PT1 bound with lower pi
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-10-20
Authors: Shuai, G., Xia, Y., Qian, W.
PDB entry 9x94: Apo Retron-Eco8 complex
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2025-10-20
Authors: Yu, Y., Chen, Q.
PDB entry 9x95: Cryo-EM Structure of G6PT1 without GlcN6P
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-10-20
Authors: Shuai, G., Xia, Y., Qian, W.
PDB entry 9x97: Cryo-EM Structure of G6PT1 bound with upper pi
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-10-20
Authors: Shuai, G., Xia, Y., Qian, W.
PDB entry 9x9b: Retron-Eco8 complex with ATP-Mg2+
Classification: RNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-10-20
Authors: Yu, Y., Chen, Q.
PDB entry 9xau: Glyoxysomal Citrate Synthase 3 from Arabidopsis thaliana in complex with OAA
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-10-23
Authors: Nishio, K., Takagi, K., Mizushima, T.
PDB entry 9xax: Crystal structure of L-threonate 3-dehydrogenase from Paracoccus litorisediminis (NADP+ and tartronate bound form)
Classification: OXIDOREDUCTASE
Source organism: Paracoccus litorisediminis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-10-23
Authors: Watanabe, S., Sato, H.
PDB entry 9xb1: Cryo-EM structure of human V1aR in apo state at a resolution of 2.8 angstrom
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-10-23
Authors: Wu, X.W., Zhong, P.Y., Chu, B.X.
PDB entry 9xb4: Crystal structure of Mrt4 (L96C) mutant
Classification: RNA BINDING PROTEIN
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-10-23
Authors: Cao, H., Hu, X., Li, W., Chang, M., Zhang, Y., Chu, Y., Ren, Y., Wan, J.
PDB entry 9xb9: Human KCNQ2-CaM in complex with QO-58 and PIP2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-10-23
Authors: Zhao, Y.W., Yang, Z.N., Guo, J.T., Du, X.N.
PDB entry 9xbk: Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-10-24
Authors: Nomura, T., Boyer, D.R., Tanaka, M.
PDB entry 9xbl: Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-10-24
Authors: Nomura, T., Boyer, D.R., Tanaka, M.
PDB entry 9xbm: Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-10-24
Authors: Nomura, T., Boyer, D.R., Tanaka, M.
PDB entry 9xbn: Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-10-24
Authors: Nomura, T., Boyer, D.R., Tanaka, M.
PDB entry 9xbo: Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-10-24
Authors: Nomura, T., Boyer, D.R., Tanaka, M.
PDB entry 9xbp: Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Classification: PROTEIN FIBRIL
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-10-24
Authors: Nomura, T., Boyer, D.R., Tanaka, M.
PDB entry 9xc8: Crystal structure of Bacteroides uniformis O-acetyltransferase
Classification: TRANSFERASE
Source organism: Bacteroides uniformis dnLKV2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2025-10-25
Authors: Meng, C.Y., Jian, X., Wu, B.X.
PDB entry 9xca: CryoEM structure of the G6PT dimer
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-10-25
Authors: Zhang, W.Q., Jiao, H.Z., Hu, H.L., Guo, X.
PDB entry 9xcb: cryoEM structure of G6PT monomer
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-10-25
Authors: Zhang, W.Q., Jiao, H.Z., Hu, H.L., Guo, X.
PDB entry 9xcf: Cryo-EM structure of csy3 with crRNA
Classification: IMMUNE SYSTEM/RNA
Source organism: Pectobacterium atrosepticum SCRI1043; Thiocystis violascens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.58 Å
Deposited: 2025-10-25
Authors: Gao, X., Cui, S., Zhu, H., Zhu, K.
PDB entry 9xcg: Cryo-EM structure of csy3 with crRNA
Classification: IMMUNE SYSTEM/RNA
Source organism: Pectobacterium atrosepticum SCRI1043; Thiocystis violascens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.85 Å
Deposited: 2025-10-25
Authors: Gao, X., Cui, S., Zhu, H., Zhu, K.
PDB entry 9xd0: Structure of a membrane-bound inositol phosphorylceramide synthase and Aureobasidin A complex
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae S288C; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2025-10-26
Authors: Chen, J.H., Ke, Y., Zhang, M., Yu, H.J.
PDB entry 9xdc: TamAB hybrid barrel state
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli str. K-12 substr. MG1655star
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2025-10-27
Authors: Dong, C., Zhang, Z., Yang, B.
PDB entry 9xdd: TamAB in non-hybrid barrel state
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli str. K-12 substr. MG1655
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.82 Å
Deposited: 2025-10-27
Authors: Dong, C., Zhang, Z., Yang, B.
PDB entry 9xdg: Glyoxysomal Citrate Synthase 3 from Arabidopsis thaliana in complex with OAA and MNB
Classification: TRANSFERASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.294 Å
Deposited: 2025-10-27
Authors: Nishio, K., Takagi, K., Mizushima, T.
PDB entry 9xea: Structure of the transmembrane domain dimer of human IL-7R V253G mutant
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-10-27
Authors: Wang, Q., Cai, T., Chou, J.J.
PDB entry 9xed: Human KCNQ2-CaM in complex with QO-83 and PIP2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-10-28
Authors: Zhao, Y.W., Yang, Z.N., Du, X.N., Guo, J.T.
PDB entry 9xey: Room temperature structure of glucose isomerase by serial femtosecond crystallography
Classification: ISOMERASE
Source organism: Streptomyces pseudogriseolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-10-28
Authors: Nam, K.H.
PDB entry 9xf5: Cycloisomaltooligosaccharide binding protein in complex with cycloisomaltooctaose
Classification: SUGAR BINDING PROTEIN
Source organism: Tepidibacillus decaturensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-10-28
Authors: Takei, S., Saburi, W., Yao, M., Mori, H., Ose, T.
PDB entry 9xfk: In situ structure of bacterial 50S ribosomes
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-10-29
Authors: Wu, F., Naschberger, A.
PDB entry 9xfl: In vitro structure of bacterial 50S ribosomes
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-10-29
Authors: Wu, F., Naschberger, A.
PDB entry 9xfu: Cycloisomaltooligosaccharide binding protein in complex with isomaltoheptaose
Classification: SUGAR BINDING PROTEIN
Source organism: Tepidibacillus decaturensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-10-29
Authors: Takei, S., Saburi, W., Yao, M., Mori, H., Ose, T.
PDB entry 9xfv: Pilus-like-alpha, a bacteria pilus-like structure obtained from a Karst cave from Guilin City, Guangxi Zhuang Autonomous Region, China
Classification: PROTEIN FIBRIL
Source organism: unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-10-29
Authors: Hu, M.X., Zhang, Q., Chen, S., Ge, Q.J., Wang, J.W., Yan, N., Qin, L.J.
PDB entry 9xfw: Crystal structure of Class A beta-lactamase BlaA in complex with Meropenem (Imine form)
Classification: HYDROLASE
Source organism: Yersinia enterocolitica
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-10-29
Authors: Bhattachaya, S., Dhankhar, K., Hazra, S.
PDB entry 9xfx: Crystal structure of Class A beta-lactamase BlaA in complex with Tebipenem (imine form)
Classification: HYDROLASE
Source organism: Yersinia enterocolitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-10-29
Authors: Bhattacharya, S., Dhankhar, K., Hazra, S.
PDB entry 9xfy: Crystal structure of Class A beta-lactamase BlaA in complex with ertapenem (imine form)
Classification: HYDROLASE
Source organism: Yersinia enterocolitica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-10-29
Authors: Bhattacharya, S., Dhankhar, K., Hazra, S.
PDB entry 9xg1: Crystal structure of protein-asparaginase from Amycolatopsis deserti
Classification: HYDROLASE
Source organism: Amycolatopsis deserti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-10-29
Authors: Yamaguchi, H., Ono, T., Takahashi, K.
PDB entry 9xgk: Structure of mammalian RNA polymerase II stalled by Actinomycin D at the N-1 position.
Classification: TRANSCRIPTION
Source organism: Bos taurus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-10-30
Authors: Xu, J., Zhao, W.
PDB entry 9xgl: D-alanyl carrier protein
Classification: STRUCTURAL PROTEIN
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-10-30
Authors: Jeon, H., Lee, I.-G.
PDB entry 9xgm: D-alanyl carrier protein S36A
Classification: STRUCTURAL PROTEIN
Source organism: Staphylococcus aureus subsp. aureus Mu50
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-10-30
Authors: Jeon, H., Lee, I.-G.
PDB entry 9xgo: Omicron-specific ultra-potent SARS-CoV-2 neutralizing antibodies targeting the N1/N2 loop of Spike N-terminal domain
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.77 Å
Deposited: 2025-10-30
Authors: Li, Z.Q., Niu, X.
PDB entry 9xhh: Structure of the CCL19-CCR7-Gi-scFv16 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-11-01
Authors: Tsutsumi, N., Nishikawa, K., Fujiyoshi, Y.
PDB entry 9xhi: Structure of the CCL21-CCR7-Gi-scFv16 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-11-01
Authors: Tsutsumi, N., Nishikawa, K., Fujiyoshi, Y.
PDB entry 9xhm: Crystal structure of AcvB from Agrobacterium tumefaciens
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.13 Å
Deposited: 2025-11-01
Authors: Hoshi, M., Watanabe, Y.
PDB entry 9xhn: Crystal structure of the C-terminal domain of AcvB from Agrobacterium tumefaciens
Classification: HYDROLASE
Source organism: Agrobacterium tumefaciens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-11-01
Authors: Hoshi, M., Watanabe, Y.
PDB entry 9xia: X-RAY ANALYSIS OF D-XYLOSE ISOMERASE AT 1.9 ANGSTROMS: NATIVE ENZYME IN COMPLEX WITH SUBSTRATE AND WITH A MECHANISM-DESIGNED INACTIVATOR
Classification: ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)
Source organism: Streptomyces rubiginosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 1990-10-11
Authors: Carrell, H.L., Glusker, J.P.