LiteFold/PDB huggingface dataset:
PDB entry 3iyq: tmRNA-SmpB: a journey to the center of the bacterial ribosome
Classification: RIBOSOMAL PROTEIN/RNA
Source organism: Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 13 Å
Deposited: 2010-04-16
Authors: Weis, F., Bron, P., Giudice, E., Rolland, J.P., Thomas, D., Felden, B., Gillet, R.
PDB entry 3iyr: tmRNA-SmpB: a journey to the center of the bacterial ribosome
Classification: RIBOSOMAL PROTEIN/RNA
Source organism: Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 13 Å
Deposited: 2010-04-16
Authors: Weis, F., Bron, P., Giudice, E., Rolland, J.P., Thomas, D., Felden, B., Gillet, R.
PDB entry 3iys: Homology model of avian polyomavirus asymmetric unit
Classification: VIRUS
Source organism: Budgerigar fledgling disease polyomavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.3 Å
Deposited: 2010-04-19
Authors: Shen, P.S., Enderlein, D., Nelson, C.D.S., Carter, W.S., Kawano, M., Xing, L., Swenson, R.D., Olson, N.H., Baker, T.S., Cheng, R.H., Atwood, W.J., Johne, R., Belnap, D.M.
PDB entry 3iyv: Clathrin D6 coat as full-length Triskelions
Classification: Endocytosis/exocytosis
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.9 Å
Deposited: 2010-06-17
Authors: Johnson, G.T., Fotin, A., Cheng, Y., Sliz, P., Grigorieff, N., Harrison, S.C., Kirchhausen, T., Walz, T.
PDB entry 3iyw: West Nile virus in complex with Fab fragments of MAb CR4354 (fitted coordinates of envelope proteins and Fab fragments of one icosahedral ASU)
Classification: VIRUS
Source organism: Homo sapiens; West Nile virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.7 Å
Deposited: 2010-06-18
Authors: Rossmann, M.G., Kaufmann, B.
PDB entry 3iyx: Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of E.coli 70S ribosome (EMD-1056)
Classification: RIBOSOMAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2010-07-23
Authors: Shasmal, M., Chakraborty, B., Sengupta, J.
PDB entry 3iyy: Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363)
Classification: RIBOSOMAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.9 Å
Deposited: 2010-07-23
Authors: Shasmal, M., Chakraborty, B., Sengupta, J.
PDB entry 3iyz: Structure of Aquaporin-4 S180D mutant at 10.0 A resolution from electron micrograph
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 10 Å
Deposited: 2010-07-24
Authors: Mitsuma, T., Tani, K., Hiroaki, Y., Kamegawa, A., Suzuki, H., Hibino, H., Kurachi, Y., Fujiyoshi, Y.
PDB entry 3iz0: Human Ndc80 Bonsai Decorated Microtubule
Classification: CELL CYCLE
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.6 Å
Deposited: 2010-08-09
Authors: Alushin, G.M., Ramey, V.H., Pasqualato, S., Ball, D.A., Grigorieff, N., Musacchio, A., Nogales, E.
PDB entry 3iz1: C-alpha model fitted into the EM structure of Cx26M34A
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 6 Å
Deposited: 2010-08-19
Authors: Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E., Fujiyoshi, Y.
PDB entry 3iz2: C-alpha model fitted into the EM structure of Cx26M34Adel2-7
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 10 Å
Deposited: 2010-08-19
Authors: Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E., Fujiyoshi, Y.
PDB entry 3iz3: CryoEM structure of cytoplasmic polyhedrosis virus
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2010-09-14
Authors: Cheng, L., Sun, J., Zhang, K., Mou, Z., Huang, X., Ji, G., Sun, F., Zhang, J., Zhu, P.
PDB entry 3iz4: Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB
Classification: RNA BINDING PROTEIN/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.6 Å
Deposited: 2010-09-21
Authors: Hashem, Y., Fu, J., Frank, J.
PDB entry 3izd: Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF.
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.6 Å
Deposited: 2010-10-13
Authors: Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
PDB entry 3izg: Bacteriophage T7 prohead shell EM-derived atomic model
Classification: VIRUS
Source organism: Enterobacteria phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.9 Å
Deposited: 2010-10-27
Authors: Ionel, A., Velazquez-Muriel, J.A., Agirrezabala, X., Luque, D., Cuervo, A., Caston, J.R., Valpuesta, J.M., Martin-Benito, J., Carrascosa, J.L.
PDB entry 3izh: Mm-cpn D386A with ATP
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 11 Å
Deposited: 2010-10-29
Authors: Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
PDB entry 3izi: Mm-cpn rls with ATP
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.7 Å
Deposited: 2010-10-29
Authors: Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
PDB entry 3izj: Mm-cpn rls with ATP and AlFx
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2010-10-29
Authors: Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
PDB entry 3izk: Mm-cpn rls deltalid with ATP
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2010-10-29
Authors: Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
PDB entry 3izl: Mm-cpn rls deltalid with ATP and AlFx
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å
Deposited: 2010-10-29
Authors: Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
PDB entry 3izm: Mm-cpn wildtype with ATP
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.2 Å
Deposited: 2010-10-30
Authors: Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
PDB entry 3izn: Mm-cpn deltalid with ATP
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.4 Å
Deposited: 2010-10-30
Authors: Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
PDB entry 3izo: Model of the fiber tail and its interactions with the penton base of human adenovirus by cryo-electron microscopy
Classification: VIRAL PROTEIN
Source organism: Human adenovirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2010-11-05
Authors: Liu, H.
PDB entry 3izp: Conformation of EF-G during translocation
Classification: RIBOSOMAL PROTEIN
Source organism: Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Deposited: 2010-11-15
Authors: Li, W., Trabuco, L.G., Schulten, K., Frank, J.
PDB entry 3izq: Structure of the Dom34-Hbs1-GDPNP complex bound to a translating ribosome
Classification: RIBOSOMAL PROTEIN,HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.5 Å
Deposited: 2010-11-30
Authors: Becker, T., Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Sieber, H., Abdel Motaal, B., Mielke, T., Berninghausen, O., Beckmann, R.
PDB entry 3izx: 3.1 Angstrom cryoEM structure of cytoplasmic polyhedrosis virus
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2011-01-15
Authors: Yu, X., Ge, P., Jiang, J., Atanasov, I., Zhou, Z.H.
PDB entry 3izy: Mammalian mitochondrial translation initiation factor 2
Classification: RNA, RIBOSOMAL PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.8 Å
Deposited: 2011-01-19
Authors: Yassin, A.S., Haque, E., Datta, P.P., Elmore, K., Banavali, N.K., Spremulli, L.L., Agrawal, R.K.
PDB entry 3izz: Models for ribosome components that are nearest neighbors to the bovine mitochondrial initiation factor2 bound to the E. Coli ribosome
Classification: RNA, RIBOSOMAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.8 Å
Deposited: 2011-01-20
Authors: Yassin, A.S., Haque, E., Datta, P.P., Elmore, K., Banavali, N.K., Spremulli, L.L., Agrawal, R.K.
PDB entry 3j02: Lidless D386A Mm-cpn in the pre-hydrolysis ATP-bound state
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2011-02-10
Authors: Zhang, J., Ma, B., DiMaio, F., Douglas, N.R., Joachimiak, L., Baker, D., Frydman, J., Levitt, M., Chiu, W.
PDB entry 3j03: Lidless Mm-cpn in the closed state with ATP/AlFx
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2011-02-10
Authors: Zhang, J., Ma, B., DiMaio, F., Douglas, N.R., Joachimiak, L., Baker, D., Frydman, J., Levitt, M., Chiu, W.
PDB entry 3j04: EM structure of the heavy meromyosin subfragment of Chick smooth muscle Myosin with regulatory light chain in phosphorylated state
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2011-02-18
Authors: Baumann, B.A.J., Taylor, D., Huang, Z., Tama, F., Fagnant, P.M., Trybus, K., Taylor, K.
PDB entry 3j05: Three-dimensional structure of Dengue virus serotype 1 complexed with HMAb 14c10 Fab
Classification: VIRUS
Source organism: Dengue virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2011-04-01
Authors: Teoh, E.P., Kukkaro, P., Teo, E.W., Lim, A., Tan, T.T., Shi, P.Y., Yip, A., Schul, W., Leo, Y.S., Chan, S.H., Smith, K.G.C., Ooi, E.E., Kemeny, D.M., Ng, G., Ng, M.L., Alonso, S., Fisher, D., Hanson, B., Lok, S.M., MacAry, P.A.
PDB entry 3j06: CryoEM Helical Reconstruction of TMV
Classification: VIRUS
Source organism: Tobacco mosaic virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2011-04-26
Authors: Ge, P., Zhou, Z.H.
PDB entry 3j07: Model of a 24mer alphaB-crystallin multimer
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: SOLID-STATE NMR, SOLUTION SCATTERING, ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2011-04-27
Authors: Jehle, S., Vollmar, B., Bardiaux, B., Dove, K.K., Rajagopal, P., Gonen, T., Oschkinat, H., Klevit, R.E.
PDB entry 3j08: High resolution helical reconstruction of the bacterial p-type ATPase copper transporter CopA
Classification: HYDROLASE, METAL TRANSPORT
Source organism: Archaeoglobus fulgidus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2011-05-09
Authors: Wu, C., Allen, G.S., Cardozo, T., Stokes, D.L.
PDB entry 3j09: High resolution helical reconstruction of the bacterial p-type ATPase copper transporter CopA
Classification: HYDROLASE, METAL TRANSPORT
Source organism: Archaeoglobus fulgidus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2011-05-09
Authors: Wu, C., Allen, G.S., Cardozo, T., Stokes, D.L.
PDB entry 3j0a: Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 26 Å
Deposited: 2011-06-02
Authors: Modis, Y., Zhou, K., Kanai, R., Lee, P., Wang, H.W.
PDB entry 3j0b: cryo-EM reconstruction of West Nile virus
Classification: VIRUS
Source organism: West Nile virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.3 Å
Deposited: 2011-06-15
Authors: Zhang, W., Kaufmann, B., Chipman, P.R., Kuhn, R.J., Rossmann, M.G.
PDB entry 3j0c: Models of E1, E2 and CP of Venezuelan Equine Encephalitis Virus TC-83 strain restrained by a near atomic resolution cryo-EM map
Classification: VIRUS
Source organism: Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2011-06-22
Authors: Zhang, R., Hryc, C.F., Cong, Y., Liu, X., Jakana, J., Gorchakov, R., Baker, M.L., Weaver, S.C., Chiu, W.
PDB entry 3j0d: Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex
Classification: TRANSLATION
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.1 Å
Deposited: 2011-06-29
Authors: Yokoyama, T., Shaikh, T.R., Iwakura, N., Kaji, H., Kaji, A., Agrawal, R.K.
PDB entry 3j0e: Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex
Classification: TRANSLATION
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.9 Å
Deposited: 2011-06-29
Authors: Yokoyama, T., Shaikh, T.R., Iwakura, N., Kaji, H., Kaji, A., Agrawal, R.K.
PDB entry 3j0f: Sindbis virion
Classification: VIRUS
Source organism: Sindbis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2011-07-08
Authors: Tang, J., Jose, J., Zhang, W., Chipman, P., Kuhn, R.J., Baker, T.S.
PDB entry 3j0g: Homology model of E3 protein of Venezuelan Equine Encephalitis Virus TC-83 strain fitted with a cryo-EM map
Classification: VIRUS
Source organism: Venezuelan equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2011-07-21
Authors: Zhang, R., Hryc, C.F., Chiu, W.
PDB entry 3j0h: Fitting of the bacteriophage phiKZ gp29PR structure into the cryo-EM density map of the phiKZ extended tail sheath
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 18 Å
Deposited: 2011-08-16
Authors: Aksyuk, A.A., Fokine, A., Kurochkina, L.P., Mesyanzhinov, V.V., Rossmann, M.G.
PDB entry 3j0i: Fitting of the phiKZ gp29PR structure into the cryo-EM density map of the phiKZ polysheath
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas phage phiKZ
Experimental method: ELECTRON MICROSCOPY
Resolution: 19 Å
Deposited: 2011-08-16
Authors: Aksyuk, A.A., Fokine, A., Kurochkina, L.P., Mesyanzhinov, V.V., Rossmann, M.G.
PDB entry 3j0j: Fitted atomic models of Thermus thermophilus V-ATPase subunits into cryo-EM map
Classification: HYDROLASE
Source organism: Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.7 Å
Deposited: 2011-08-24
Authors: Lau, W.C.Y., Rubinstein, J.L.
PDB entry 3j0k: Orientation of RNA polymerase II within the human VP16-Mediator-pol II-TFIIF assembly
Classification: TRANSFERASE/TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 36 Å
Deposited: 2011-10-04
Authors: Bernecky, C., Grob, P., Ebmeier, C.C., Nogales, E., Taatjes, D.J.
PDB entry 3j0l: Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.8 Å
Deposited: 2011-10-04
Authors: Budkevich, T., Giesebrecht, J., Altman, R., Munro, J., Mielke, T., Nierhaus, K., Blanchard, S., Spahn, C.M.
PDB entry 3j0o: Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2011-10-05
Authors: Budkevich, T., Giesebrecht, J., Altman, R., Munro, J., Mielke, T., Nierhaus, K., Blanchard, S., Spahn, C.M.
PDB entry 3j0p: Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.6 Å
Deposited: 2011-10-06
Authors: Budkevich, T., Giesebrecht, J., Altman, R., Munro, J., Mielke, T., Nierhaus, K., Blanchard, S., Spahn, C.M.
PDB entry 3j0q: Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.6 Å
Deposited: 2011-10-11
Authors: Budkevich, T., Giesebrecht, J., Altman, R., Munro, J., Mielke, T., Nierhaus, K., Blanchard, S., Spahn, C.M.
PDB entry 3j0r: Model of a type III secretion system needle based on a 7 Angstrom resolution cryoEM map
Classification: PROTEIN TRANSPORT
Source organism: Shigella flexneri
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.7 Å
Deposited: 2011-11-03
Authors: Fujii, T., Cheung, M., Blanco, A., Kato, T., Blocker, A.J., Namba, K.
PDB entry 3j0s: Remodeling of actin filaments by ADF cofilin proteins
Classification: CONTRACTILE PROTEIN/PROTEIN BINDING
Source organism: Gallus gallus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2011-11-24
Authors: Galkin, V.E., Orlova, A., Kudryashov, D.S., Solodukhin, A., Reisler, E., Schroeder, G.F., Egelman, E.H.
PDB entry 3j15: Model of ribosome-bound archaeal Pelota and ABCE1
Classification: TRANSLATION/TRANSPORT PROTEIN
Source organism: Pyrococcus furiosus; Thermococcus kodakarensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2011-12-12
Authors: Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R.
PDB entry 3j16: Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.2 Å
Deposited: 2011-12-12
Authors: Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R.
PDB entry 3j17: Structure of a transcribing cypovirus by cryo-electron microscopy
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2011-12-25
Authors: Yang, C., Ji, G., Liu, H., Zhang, K., Liu, G., Sun, F., Zhu, P., Cheng, L.
PDB entry 3j1a: HK97-like fold fitted into 3D reconstruction of bacteriophage CW02
Classification: VIRUS
Source organism: Great Salt Lake bacteriophage CW02
Experimental method: ELECTRON MICROSCOPY
Resolution: 16 Å
Deposited: 2012-01-31
Authors: Shen, P.S., Domek, M.J., Sanz-Garcia, E., Makaju, A., Taylor, R., Culumber, M., Breakwell, D.P., Prince, J.T., Belnap, D.M.
PDB entry 3j1b: Cryo-EM structure of 8-fold symmetric rATcpn-alpha in apo state
Classification: CHAPERONE
Source organism: Acidianus tengchongensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2012-02-06
Authors: Zhang, K., Wang, L., Liu, Y.X., Wang, X., Gao, B., Hu, Z.J., Ji, G., Chan, K.Y., Schulten, K., Dong, Z.Y., Sun, F.
PDB entry 3j1c: Cryo-EM structure of 9-fold symmetric rATcpn-alpha in apo state
Classification: CHAPERONE
Source organism: Acidianus tengchongensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.1 Å
Deposited: 2012-02-06
Authors: Zhang, K., Wang, L., Liu, Y.X., Wang, X., Gao, B., Hu, Z.J., Ji, G., Chan, K.Y., Schulten, K., Dong, Z.Y., Sun, F.
PDB entry 3j1e: Cryo-EM structure of 9-fold symmetric rATcpn-beta in apo state
Classification: CHAPERONE
Source organism: Acidianus tengchongensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.3 Å
Deposited: 2012-02-06
Authors: Zhang, K., Wang, L., Liu, Y.X., Wang, X., Gao, B., Hu, Z.J., Ji, G., Chan, K.Y., Schulten, K., Dong, Z.Y., Sun, F.
PDB entry 3j1f: Cryo-EM structure of 9-fold symmetric rATcpn-beta in ATP-binding state
Classification: CHAPERONE
Source organism: Acidianus tengchongensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å
Deposited: 2012-02-06
Authors: Zhang, K., Wang, L., Liu, Y.X., Wang, X., Gao, B., Hu, Z.J., Ji, G., Chan, K.Y., Schulten, K., Dong, Z.Y., Sun, F.
PDB entry 3j1n: Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 16 Å
Deposited: 2012-03-29
Authors: Asturias, F.J., Imasaki, T.
PDB entry 3j1o: Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
Classification: TRANSCRIPTION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 16 Å
Deposited: 2012-03-29
Authors: Asturias, F.J., Imasaki, T.
PDB entry 3j1p: Atomic model of rabbit hemorrhagic disease virus
Classification: VIRUS
Source organism: Rabbit hemorrhagic disease virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å
Deposited: 2012-04-09
Authors: Wang, X., Liu, Y., Sun, F.
PDB entry 3j1q: Structure of AAV-DJ, a Retargeted Gene Therapy Vector: Cryo-Electron Microscopy at 4.5A resolution
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2012-04-30
Authors: Lerch, T.F., O'Donnell, J.K., Meyer, N.L., Xie, Q., Taylor, K.A., Stagg, S.M., Chapman, M.S.
PDB entry 3j1r: Filaments from Ignicoccus hospitalis Show Diversity of Packing in Proteins Containing N-terminal Type IV Pilin Helices
Classification: CELL ADHESION, STRUCTURAL PROTEIN
Source organism: Ignicoccus hospitalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.5 Å
Deposited: 2012-05-18
Authors: Yu, X., Goforth, C., Meyer, C., Rachel, R., Wirth, R., Schroeder, G.F., Egelman, E.H.
PDB entry 3j1s: Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Adeno-associated virus - 2; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.5 Å
Deposited: 2012-05-23
Authors: Chapman, M.S., McCraw, D.M.
PDB entry 3j1t: High affinity dynein microtubule binding domain - tubulin complex
Classification: MOTOR PROTEIN/STRUCTURAL PROTEIN
Source organism: Bos taurus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.7 Å
Deposited: 2012-06-25
Authors: Redwine, W.B., Hernandez-Lopez, R., Zou, S., Huang, J., Reck-Peterson, S.L., Leschziner, A.E.
PDB entry 3j1u: Low affinity dynein microtubule binding domain - tubulin complex
Classification: MOTOR PROTEIN/STRUCTURAL PROTEIN
Source organism: Bos taurus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.7 Å
Deposited: 2012-06-25
Authors: Redwine, W.B., Hernandez-Lopez, R., Zou, S., Huang, J., Reck-Peterson, S.L., Leschziner, A.E.
PDB entry 3j1v: A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Classification: CELL INVASION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.7 Å
Deposited: 2012-07-08
Authors: Sgourakis, N.G., Bergeron, J.R.C., Strynadka, N.J.C., Baker, D.
PDB entry 3j1w: A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Classification: CELL INVASION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.7 Å
Deposited: 2012-07-10
Authors: Sgourakis, N.G., Worrall, L.J., Strynadka, N.C.J., Baker, D.
PDB entry 3j1x: A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Classification: CELL INVASION
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.7 Å
Deposited: 2012-07-10
Authors: Sgourakis, N.G., Bergeron, J.R.C., Worrall, L.J., Strynadka, N.C.J., Baker, D.
PDB entry 3j1z: Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy
Classification: METAL TRANSPORT
Source organism: Shewanella oneidensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 13 Å
Deposited: 2012-07-24
Authors: Coudray, N., Valvo, S., Hu, M., Lasala, R., Kim, C., Vink, M., Zhou, M., Provasi, D., Filizola, M., Tao, J., Fang, J., Penczek, P.A., Ubarretxena-Belandia, I., Stokes, D.L., Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS)
PDB entry 3j22: The Enterovirus 71 A-particle
Classification: VIRUS
Source organism: Human enterovirus 71
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2012-08-13
Authors: Shingler, K.L.
PDB entry 3j23: The Enterovirus 71 empty capsid
Classification: VIRUS
Source organism: Human enterovirus 71
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.2 Å
Deposited: 2012-08-13
Authors: Shingler, K.L.
PDB entry 3j24: CryoEM reconstruction of complement decay-accelerating factor
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2012-08-17
Authors: Yoder, J.D., Hafenstein, S.H.
PDB entry 3j25: Structural basis for TetM-mediated tetracycline resistance
Classification: TRANSLATION
Source organism: Enterococcus faecalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.2 Å
Deposited: 2012-08-22
Authors: Doenhoefer, A., Franckenberg, S., Wickles, S., Berninghausen, O., Beckmann, R., Wilson, D.N.
PDB entry 3j26: The 3.5 A resolution structure of the Sputnik virophage by cryo-EM
Classification: VIRUS
Source organism: Sputnik virophage
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2012-09-18
Authors: Zhang, X.Z.
PDB entry 3j27: CryoEM structure of Dengue virus
Classification: VIRUS
Source organism: Dengue virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2012-09-26
Authors: Zhang, X., Ge, P., Yu, X., Brannan, J.M., Bi, G., Zhang, Q., Schein, S., Zhou, Z.H.
PDB entry 3j28: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.9 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j29: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 14 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2a: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.1 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2b: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.6 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2c: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.2 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2d: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 18.7 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2e: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 15.3 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2f: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 17.6 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2g: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 16.5 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2h: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Classification: RIBOSOME
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 18.8 Å
Deposited: 2012-09-28
Authors: Guo, Q., Goto, S., Chen, Y., Muto, A., Himeno, H., Deng, H., Lei, J., Gao, N.
PDB entry 3j2i: Structure of late pre-60S ribosomal subunits with nuclear export factor Arx1 bound at the peptide exit tunnel
Classification: RIBOSOMAL PROTEIN, SIGNALING PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.9 Å
Deposited: 2012-10-04
Authors: Bradatsch, B., Leidig, C., Granneman, S., Gnaedig, M., Tollervey, D., Boettcher, B., Beckmann, R., Hurt, E.
PDB entry 3j2j: Empty coxsackievirus A9 capsid
Classification: VIRUS
Source organism: Human coxsackievirus A9
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.54 Å
Deposited: 2012-10-04
Authors: Shakeel, S., Seitsonen, J.J.T., Kajander, T., Laurinmaki, P., Hyypia, T., Susi, P., Butcher, S.J.
PDB entry 3j2m: The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the extended T4 tail
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2012-11-09
Authors: Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.
PDB entry 3j2n: The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the contracted T4 tail
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 16 Å
Deposited: 2012-11-10
Authors: Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.
PDB entry 3j2o: Model of the bacteriophage T4 fibritin based on the cryo-EM reconstruction of the contracted T4 tail containing the phage collar and whiskers
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 25 Å
Deposited: 2012-11-12
Authors: Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A.A., Arisaka, F., Rao, V.B., Rossmann, M.G.
PDB entry 3j2p: CryoEM structure of Dengue virus envelope protein heterotetramer
Classification: VIRAL PROTEIN
Source organism: Dengue virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2012-11-30
Authors: Zhang, X., Ge, P., Yu, X., Brannan, J.M., Bi, G., Zhang, Q., Schein, S., Zhou, Z.H.
PDB entry 3j2q: Model of membrane-bound factor VIII organized in 2D crystals
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 15 Å
Deposited: 2012-12-11
Authors: Stoilova-Mcphie, S., Lynch, G.C., Ludtke, S., Pettitt, B.M.
PDB entry 3j2s: Membrane-bound factor VIII light chain
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å
Deposited: 2012-12-21
Authors: Stoilova-Mcphie, S., Lynch, G.C., Ludtke, S., Pettitt, B.M.
PDB entry 3j2t: An improved model of the human apoptosome
Classification: APOPTOSIS
Source organism: Bos taurus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.5 Å
Deposited: 2012-12-23
Authors: Yuan, S., Topf, M., Akey, C.W.
PDB entry 3j2u: Kinesin-13 KLP10A HD in complex with CS-tubulin and a microtubule
Classification: MOTOR PROTEIN
Source organism: Bos taurus; Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.8 Å
Deposited: 2013-01-10
Authors: Asenjo, A.B., Chatterjee, C., Tan, D., DePaoli, V., Rice, W.J., Diaz-Avalos, R., Silvestry, M., Sosa, H.
PDB entry 3j2v: CryoEM structure of HBV core
Classification: VIRUS
Source organism: Hepatitis B virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2013-01-11
Authors: Yu, X., Jin, L., Jih, J., Shih, C., Zhou, Z.H.
PDB entry 3j2w: Electron cryo-microscopy of Chikungunya virus
Classification: VIRUS
Source organism: Chikungunya virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2013-01-28
Authors: Sun, S., Xiang, Y., Rossmann, M.G.
PDB entry 3j2x: Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab m242
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 15.6 Å
Deposited: 2013-01-28
Authors: Sun, S., Xiang, Y., Rossmann, M.G.
PDB entry 3j2y: Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab 9.8B
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 14.9 Å
Deposited: 2013-01-28
Authors: Sun, S., Xiang, Y., Rossmann, M.G.
PDB entry 3j2z: Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab m10
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 16.9 Å
Deposited: 2013-01-28
Authors: Sun, S., Xiang, Y., Rossmann, M.G.
PDB entry 3j30: Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab CHK152
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 16 Å
Deposited: 2013-01-28
Authors: Sun, S., Xiang, Y., Rossmann, M.G.
PDB entry 3j31: Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus
Classification: VIRUS
Source organism: Sulfolobus turreted icosahedral virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2013-02-18
Authors: Veesler, D., Ng, T.S., Sendamarai, A.K., Eilers, B.J., Lawrence, C.M., Lok, S.M., Young, M.J., Johnson, J.E., Fu, C.-Y.
PDB entry 3j32: An asymmetric unit map from electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)
Classification: OXYGEN TRANSPORT
Source organism: Haliotis diversicolor
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2013-02-20
Authors: Zhang, Q., Dai, X., Cong, Y., Zhang, J., Chen, D.-H., Dougherty, M., Wang, J., Ludtke, S., Schmid, M.F., Chiu, W.
PDB entry 3j34: Structure of HIV-1 Capsid Protein by Cryo-EM
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.6 Å
Deposited: 2013-02-23
Authors: Zhao, G., Perilla, J.R., Yufenyuy, E., Meng, X., Chen, B., Ning, J., Ahn, J., Gronenborn, A.M., Schulten, K., Aiken, C., Zhang, P.
PDB entry 3j35: Cryo-EM reconstruction of Dengue virus at 37 C
Classification: VIRUS
Source organism: Dengue virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 35 Å
Deposited: 2013-02-24
Authors: Zhang, X.Z., Sheng, J., Plevka, P., Kuhn, R.J., Diamond, M.S., Rossmann, M.G.
PDB entry 3j3i: Penicillium chrysogenum virus (PcV) capsid structure
Classification: VIRUS
Source organism: Penicillium chrysogenum virus (isolate Caston)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2013-03-08
Authors: Luque, D., Gomez-Blanco, J., Garriga, D., Brilot, A., Gonzalez, J.M., Havens, W.H., Carrascosa, J.L., Trus, B.L., Verdaguer, N., Grigorieff, N., Ghabrial, S.A., Caston, J.R.
PDB entry 3j3o: Conformational Shift of a Major Poliovirus Antigen Confirmed by Immuno-Cryogenic Electron Microscopy: 160S Poliovirus and C3-Fab Complex
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Human poliovirus 1; Mus musculus; unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.1 Å
Deposited: 2013-04-10
Authors: Lin, J., Cheng, N., Hogle, J.M., Steven, A.C., Belnap, D.M.
PDB entry 3j3p: Conformational Shift of a Major Poliovirus Antigen Confirmed by Immuno-Cryogenic Electron Microscopy: 135S Poliovirus and C3-Fab Complex
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Human poliovirus 1; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.1 Å
Deposited: 2013-04-10
Authors: Lin, J., Cheng, N., Hogle, J.M., Steven, A.C., Belnap, D.M.
PDB entry 3j3q: Atomic-level structure of the entire HIV-1 capsid
Classification: VIRUS
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Deposited: 2013-04-12
Authors: Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.
PDB entry 3j3r: Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
Classification: CHAPERONE
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å
Deposited: 2013-04-18
Authors: Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.
PDB entry 3j3s: Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
Classification: CHAPERONE
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 11 Å
Deposited: 2013-04-18
Authors: Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.
PDB entry 3j3t: Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
Classification: CHAPERONE
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2013-04-18
Authors: Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.
PDB entry 3j3u: Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
Classification: CHAPERONE
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 10 Å
Deposited: 2013-04-18
Authors: Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.
PDB entry 3j3v: Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)
Classification: RIBOSOME
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.3 Å
Deposited: 2013-04-28
Authors: Li, N., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Lei, J., Gao, N.
PDB entry 3j3w: Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)
Classification: RIBOSOME
Source organism: Bacillus subtilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.7 Å
Deposited: 2013-04-28
Authors: Li, N., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Lei, J., Gao, N.
PDB entry 3j3x: Independent reconstruction of Mm-cpn cryo-EM density map from half dataset in the closed state (training map)
Classification: CHAPERONE
Source organism: Methanococcus maripaludis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2013-05-02
Authors: DiMaio, F., Zhang, J., Chiu, W., Baker, D.
PDB entry 3j3y: Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers)
Classification: VIRUS
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Deposited: 2013-05-06
Authors: Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.
PDB entry 3j3z: Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 23.4 Å
Deposited: 2013-05-21
Authors: Lee, H., Cifuente, J.O., Ashley, R.E., Conway, J.F., Makhov, A.M., Tano, Y., Shimizu, H., Nishimura, Y., Hafenstein, S.
PDB entry 3j40: Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling
Classification: VIRUS
Source organism: Salmonella phage epsilon15
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å
Deposited: 2013-05-30
Authors: Baker, M.L., Hryc, C.F., Zhang, Q., Wu, W., Jakana, J., Haase-Pettingell, C., Afonine, P.V., Adams, P.D., King, J.A., Jiang, W., Chiu, W.
PDB entry 3j41: Pseudo-atomic model of the Aquaporin-0/Calmodulin complex derived from electron microscopy
Classification: TRANSPORT PROTEIN/CALCIUM BINDING
Source organism: Homo sapiens; Ovis aries
Experimental method: ELECTRON MICROSCOPY
Resolution: 25 Å
Deposited: 2013-05-31
Authors: Reichow, S.L., Clemens, D.M., Freites, J.A., Nemeth-Cahalan, K.L., Heyden, M., Tobias, D.J., Hall, J.E., Gonen, T.
PDB entry 3j42: Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Dengue virus 2; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 21 Å
Deposited: 2013-06-13
Authors: Wang, Z., Pennington, J.G., Jiang, W., Rossmann, M.G.
PDB entry 3j45: Structure of a non-translocating SecY protein channel with the 70S ribosome
Classification: RIBOSOME/PROTEIN TRANSPORT
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.5 Å
Deposited: 2013-06-18
Authors: Menetret, J.F., Park, E., Gumbart, J.C., Ludtke, S.J., Li, W., Whynot, A., Rapoport, T.A., Akey, C.W.
PDB entry 3j46: Structure of the SecY protein translocation channel in action
Classification: RIBOSOME/PROTEIN TRANSPORT
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.1 Å
Deposited: 2013-06-18
Authors: Akey, C.W., Park, E., Menetret, J.F., Gumbart, J.C., Ludtke, S.J., Li, W., Whynot, A., Rapoport, T.A.
PDB entry 3j47: Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid
Classification: PROTEIN BINDING
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.4 Å
Deposited: 2013-06-27
Authors: Estrin, E., Lopez-Blanco, J.R., Chacon, P., Martin, A.
PDB entry 3j48: Cryo-EM structure of Poliovirus 135S particles
Classification: VIRUS
Source organism: Human poliovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2013-06-28
Authors: Butan, C., Fiman, D.J., Hogle, J.M.
PDB entry 3j4a: Structure of gp8 connector protein
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2013-07-09
Authors: Cuervo, A., Pulido-Cid, M., Chagoyen, M., Arranz, R., Gonzalez-Garcia, V.A., Garcia-Doval, C., Caston, J.R., Valpuesta, J.M., van Raaij, M.J., Martin-Benito, J., Carrascosa, J.L.
PDB entry 3j4b: Structure of T7 gatekeeper protein (gp11)
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2013-07-09
Authors: Cuervo, A., Pulido-Cid, M., Chagoyen, M., Arranz, R., Gonzalez-Garcia, V.A., Garcia-Doval, C., Caston, J.R., Valpuesta, J.M., van Raaij, M.J., Martin-Benito, J., Carrascosa, J.L.
PDB entry 3j4f: Structure of HIV-1 capsid protein by cryo-EM
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.6 Å
Deposited: 2013-07-11
Authors: Zhao, G., Perilla, J.R., Meng, X., Schulten, K., Zhang, P.
PDB entry 3j4g: Structure of lysozyme solved by MicroED to 2.9 A
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.9 Å
Deposited: 2013-08-12
Authors: Shi, D., Nannenga, B.L., Iadanza, M.G., Gonen, T.
PDB entry 3j4j: Model of full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map
Classification: TRANSLATION
Source organism: Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.5 Å
Deposited: 2013-08-26
Authors: Simonetti, A., Marzi, S., Billas, I.M.L., Tsai, A., Fabbretti, A., Myasnikov, A., Roblin, P., Vaiana, A.C., Hazemann, I., Eiler, D., Steitz, T.A., Puglisi, J.D., Gualerzi, C.O., Klaholz, B.P.
PDB entry 3j4k: Cryo-EM structures of the actin:tropomyosin filament reveal the mechanism for the transition from C- to M-state
Classification: STRUCTURAL PROTEIN
Source organism: Gallus gallus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2013-08-26
Authors: Sousa, D.R., Stagg, S.M., Stroupe, M.E.
PDB entry 3j4p: Electron Microscopy Analysis of a Disaccharide Analog complex Reveals Receptor Interactions of Adeno-Associated Virus
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2013-09-10
Authors: Xie, Q., Chapman, M.S.
PDB entry 3j4q: Pseudo-atomic model of the AKAP18-PKA complex in a bent conformation derived from electron microscopy
Classification: TRANSFERASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 35 Å
Deposited: 2013-09-25
Authors: Reichow, S.L., Gonen, T.
PDB entry 3j4r: Pseudo-atomic model of the AKAP18-PKA Complex in a linear conformation derived from electron microscopy
Classification: TRANSFERASE
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 35 Å
Deposited: 2013-09-25
Authors: Reichow, S.L., Gonen, T.
PDB entry 3j4s: Helical Model of TubZ-Bt four-stranded filament
Classification: STRUCTURAL PROTEIN
Source organism: Bacillus thuringiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.8 Å
Deposited: 2013-10-03
Authors: Montabana, E.A., Agard, D.A.
PDB entry 3j4t: Helical model of TubZ-Bt two-stranded filament
Classification: STRUCTURAL PROTEIN
Source organism: Bacillus thuringiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 10.8 Å
Deposited: 2013-10-04
Authors: Agard, D.A., Montabana, E.A.
PDB entry 3j4u: A new topology of the HK97-like fold revealed in Bordetella bacteriophage: non-covalent chainmail secured by jellyrolls
Classification: VIRUS
Source organism: Bordetella phage BPP-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2013-10-09
Authors: Zhang, X., Guo, H., Jin, L., Czornyj, E., Hodes, A., Hui, W.H., Nieh, A.W., Miller, J.F., Zhou, Z.H.
PDB entry 3j5l: Structure of the E. coli 50S subunit with ErmBL nascent chain
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli; Streptococcus sanguinis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2013-10-23
Authors: Arenz, S., Ramu, H., Gupta, P., Berninghausen, O., Beckmann, R., Vazquez-Laslop, N., Mankin, A.S., Wilson, D.N.
PDB entry 3j5m: Cryo-EM structure of the BG505 SOSIP.664 HIV-1 Env trimer with 3 PGV04 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2013-10-26
Authors: Lyumkis, D., Julien, J.-P., Wilson, I.A., Ward, A.B.
PDB entry 3j5p: Structure of TRPV1 ion channel determined by single particle electron cryo-microscopy
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.275 Å
Deposited: 2013-10-28
Authors: Liao, M., Cao, E., Julius, D., Cheng, Y.