LiteFold/PDB huggingface dataset:
PDB entry 9vj4: Structure of a membrane-bound inositol phosphorylceramide synthase and ceramide complex
Classification: LIPID BINDING PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-06-19
Authors: Chen, J.H., Ke, Y., Zhang, M., Yu, H.J.
PDB entry 9vj5: Cryo-EM structure of 5-HT1AR-GoA in complex with gepirone
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2025-06-19
Authors: Wang, C., Cao, C.
PDB entry 9vj6: Cryo-EM structure of 5-HT1AR-Gi3 in complex with F-15599
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-06-19
Authors: Wang, C., Cao, C.
PDB entry 9vj8: Type II-A CRISPR integrase complex, apo form
Classification: DNA BINDING PROTEIN
Source organism: Enterococcus faecalis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-06-19
Authors: Li, Z., Li, Y., Wu, Q., Lu, M., Xiao, Y.
PDB entry 9vj9: Type I-A CRISPR integrase prespacer catching complex, State I
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Enterococcus faecalis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-06-19
Authors: Li, Z.X., Li, Y.T., Lu, M.L., Xiao, Y.B.
PDB entry 9vja: Type I-A CRISPR integrase prespacer catching complex, State II
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Enterococcus faecalis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-06-19
Authors: Li, Z.X., Li, Y.T., Lu, M.L., Xiao, Y.B.
PDB entry 9vjb: Type II-A CRISPR integrase pre-integration complex
Classification: DNA BINDING PROTEIN/DNA
Source organism: Enterococcus faecalis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Deposited: 2025-06-19
Authors: Li, Z.X., Li, Y.T., Lu, M.L., Xiao, Y.B.
PDB entry 9vje: Cryo-EM structure of 5-HT1AR-GoA in complex with buspirone
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2025-06-19
Authors: Wang, C., Cao, C.
PDB entry 9vjf: Cryo-EM structure of 5-HT1AR-Gi3 in complex with buspirone
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-19
Authors: Wang, C., Cao, C.
PDB entry 9vjg: Cryo-EM structure of 5-HT1AR-Gz in complex with (R)-8-OH-DPAT
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-06-19
Authors: Wang, C., Cao, C.
PDB entry 9vjj: Crystal Structure of human Latent TGF-beta1 in complex with SOF10
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.477 Å
Deposited: 2025-06-20
Authors: Kawauchi, H., Kanamori, M., Sato, I., Fukami, T.A., Irie, M., Torizawa, T., Shimada, H.
PDB entry 9vjl: Phosphorylation dependent recognition of RIPK1 by phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1
Classification: APOPTOSIS
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2025-06-20
Authors: Liu, J., Liu, Z., Xue, H., Xie, X., Sun, W., Chou, J.
PDB entry 9vjm: Structure of the plant diacylglycerol O-acyltransferase 1 C246A mutant
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-06-21
Authors: Liu, X.Y., Li, J.J., Song, D.F., Liu, Z.F.
PDB entry 9vjs: Cryo-EM structure of Euglenophyte photosystem I
Classification: PHOTOSYNTHESIS
Source organism: Euglena gracilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-06-21
Authors: Zhao, L.S., Qin, B.Y., Li, K., Liu, L.N., Zhang, Y.Z.
PDB entry 9vjx: Structure of the plant diacylglycerol O-acyltransferase 1 H447A mutant
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-06-21
Authors: Liu, X.Y., Li, J.J., Song, D.F., Liu, Z.F.
PDB entry 9vk0: Structure of the plant diacylglycerol O-acyltransferase 1 in complex with triacylglycerol and free fatty acid
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-06-22
Authors: Liu, X.Y., Li, J.J., Song, D.F., Liu, Z.F.
PDB entry 9vk1: Structure of the plant diacylglycerol O-acyltransferase 1 in complex with oleoyl-CoA
Classification: MEMBRANE PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2025-06-22
Authors: Liu, X.Y., Li, J.J., Song, D.F., Liu, Z.F.
PDB entry 9vk4: Crystal structure of Xyn10A from Thermoascus crustaceus
Classification: HYDROLASE
Source organism: Thermoascus crustaceus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-06-22
Authors: Nam, K.H.
PDB entry 9vkf: Crystal structure of yeast arginine N-methyltransferase 1,HMT1
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-06-23
Authors: Yang, X.Y., Zhou, Y.H., Shang, X.C., Liu, Y.L.
PDB entry 9vkg: Cryo-EM structure of a human flippase mutant ATP11C Q79E-CDC50A in PtdCho-occluded E2-AlF state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2025-06-23
Authors: Qian, Y., Abe, K.
PDB entry 9vkk: Crystal structure of EV71 3C protease in complex with bofutrelvir
Classification: HYDROLASE
Source organism: Human enterovirus 71 (strain BRCR)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-23
Authors: Zhang, L., Ye, Z.
PDB entry 9vkm: Crystal structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase MicC
Classification: OXIDOREDUCTASE
Source organism: Mucilaginibacter inviolabilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-06-23
Authors: Guo, S.J.
PDB entry 9vkn: Crystal structure of DhdR in complex with inducer L2HG
Classification: TRANSCRIPTION
Source organism: Achromobacter denitrificans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.44 Å
Deposited: 2025-06-23
Authors: Sun, P., Wang, B.
PDB entry 9vkp: Cryo-EM structure of F-ATP synthase from Mycobacteroides abscessus (Rotational State 1)
Classification: HYDROLASE
Source organism: Mycobacteroides abscessus subsp. abscessus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2025-06-23
Authors: Fong, T.C., Saw, W.-G., Mathiyazakan, V., Wong, C.F., Grueber, G.
PDB entry 9vkq: Cryo-EM structure of F-ATP synthase from Mycobacteroides abscessus (Rotational State 2)
Classification: HYDROLASE
Source organism: Mycobacteroides abscessus subsp. abscessus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-06-23
Authors: Fong, T.C., Saw, W.-G., Mathiyazakan, V., Wong, C.F., Grueber, G.
PDB entry 9vkr: Cryo-EM structure of F-ATP synthase from Mycobacteroides abscessus (Rotational State 3)
Classification: HYDROLASE
Source organism: Mycobacteroides abscessus subsp. abscessus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-06-23
Authors: Fong, T.C., Saw, W.-G., Mathiyazakan, V., Wong, C.F., Grueber, G.
PDB entry 9vks: Cryo-EM structure of F-ATP synthase c-ring from Mycobacteroides abscessus (Backbone)
Classification: HYDROLASE
Source organism: Mycobacteroides abscessus subsp. abscessus
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.61 Å
Deposited: 2025-06-23
Authors: Fong, T.C., Saw, W.-G., Mathiyazakan, V., Wong, C.F., Grueber, G.
PDB entry 9vku: Cryo-EM structure of DRT9 tetramer complex
Classification: ANTIVIRAL PROTEIN/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2025-06-23
Authors: Zhang, H., Zhang, S.
PDB entry 9vkv: Cryo-EM structure of the type I pilus from Escherichia Coli and the surrounding water network
Classification: CELL ADHESION
Source organism: Escherichia coli (strain K12)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.09 Å
Deposited: 2025-06-24
Authors: Petrova, T.E., Glukhov, A.S., Guskov, A., Gabdulkhakov, A.G.
PDB entry 9vkw: Cryo-EM structure of the NuA3 complex bound to Ace-coenzyme A
Classification: TRANSFERASE
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2025-06-24
Authors: Zhang, H.Q., Wang, Y.R.
PDB entry 9vl0: CYP105A1 complexed with simvastatin (cryogenic data collection)
Classification: OXIDOREDUCTASE
Source organism: Streptomyces griseolus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-06-24
Authors: Takita, T., Yoneda, S., Yasuda, K., Mizutani, K., Yasukawa, K., Sakaki, T.
PDB entry 9vl3: Cryo-EM structure of human lipid phosphate phosphatase 1 complexed with PO4 in nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-06-24
Authors: Yang, M., Qian, H.W.
PDB entry 9vl4: Cryo-EM structure of bacteriophage P1 head at three-fold axis
Classification: VIRAL PROTEIN
Source organism: Escherichia phage P1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-06-24
Authors: Yang, F., Liu, H.R.
PDB entry 9vla: Crystal structure of PNGase Bb in complex with MUXF glycopeptide
Classification: HYDROLASE
Source organism: Ananas comosus; Bifidobacterium bifidum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2025-06-24
Authors: Wu, T.T., Voglmeir, J., Wei, B.Q.
PDB entry 9vlb: Crystal Structure of a GDP-bound Bombyx mori RabX6
Classification: PROTEIN BINDING
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-06-25
Authors: Urushihara, R., Umemoto, Y., Liu, J., Nishimoto, E., Teramoto, T., Kakuta, Y., Uno, T.
PDB entry 9vlf: Structural studies on the conformation changes induced by ligand binding in an Adenine phosphoribosyltransferase (FnAPRT) from Fusobacterium nucleatum
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-06-25
Authors: Kim, B., Hwang, J., Do, H., Lee, J.H.
PDB entry 9vlg: Structure of human alpha-2/delta-1 with crisugabalin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-06-25
Authors: Wang, J., Chen, Z., Gou, X.
PDB entry 9vlh: Crystal structure of Bacillus subtilis DegQ tetramer
Classification: TRANSCRIPTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-25
Authors: Fujimoto, Z., Kishine, N., Kimura, K.
PDB entry 9vli: Crystal structure of Bacillus subtilis DegQ S25L mutant
Classification: TRANSCRIPTION
Source organism: Bacillus subtilis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-06-25
Authors: Fujimoto, Z., Kishine, N., Kimura, K.
PDB entry 9vlq: herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Classification: REPLICATION/DNA
Source organism: Human alphaherpesvirus 1 strain 17; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-26
Authors: Wu, Y.Q., Jiang, Z.Y., Chen, X.L., Zheng, Z.Y., Dong, C.J.
PDB entry 9vls: Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab (focused refinement of the S2-76E1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2025-06-26
Authors: Liu, Z.M., Bao, Z.H., Sun, X.Y., Sun, L.
PDB entry 9vlt: Cryo-EM structure of SARS-CoV-2 XBB.1.5 S trimer in the early fusion intermediate conformation (E-FIC) complexed with ACE2 and 76E1-Fab
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.65 Å
Deposited: 2025-06-26
Authors: Liu, Z.M., Bao, Z.H., Sun, X.Y., Sun, L.
PDB entry 9vm1: MVM NS2 mutant Nm42 in complex with CRM1-Ran-RanBP1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae S288C
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-06-27
Authors: Sun, Q., Li, Y.
PDB entry 9vma: Cryo-EM structure of substrate-bound DRT9 hexamer complex
Classification: ANTIVIRAL PROTEIN/RNA/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2025-06-27
Authors: Zhang, S., Zhang, H.
PDB entry 9vmj: Crystal structure of TeGH116 from Thermosynechococcus elongatus
Classification: HYDROLASE
Source organism: Thermosynechococcus vestitus BP-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-06-28
Authors: Beagbandee, C., Charoenwattanasatien, R., Pengthaisong, S., Kurisu, G., Ketudat Cairns, J.R.
PDB entry 9vmk: Crystal structure of TeGH116 from Thermosynechococcus elongatus with glucose
Classification: HYDROLASE
Source organism: Thermosynechococcus vestitus BP-1
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-28
Authors: Beagbandee, C., Charoenwattanasatien, R., Pengthaisong, S., Kurisu, G., Ketudat Cairns, J.R.
PDB entry 9vmm: human CTPS1 with 2CTP and DON
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-06-28
Authors: Guo, C.J., Bao, X.J., Liu, J.L.
PDB entry 9vmn: Cryo-EM structure of the a-KG-OXGR1-Gq complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-06-28
Authors: Tang, X.J., Sun, J.P., Guo, L.L., Li, J., Deng, Z.L., Xiao, W.Q., Zhu, Y., Zhu, K.K.
PDB entry 9vmo: Cryo-EM structure of the ITA-OXGR1-Gq complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-06-28
Authors: Tang, X.J., Sun, J.P., Guo, L.L., Li, J., Deng, Z.L., Xiao, W.Q., Zhu, Y., Zhu, K.K.
PDB entry 9vmp: Cryo-EM structure of the A-1-OXGR1-Gq complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-06-28
Authors: Tang, X.J., Sun, J.P., Guo, L.L., Li, J., Deng, Z.L., Xiao, W.Q., Zhu, Y., Zhu, K.K.
PDB entry 9vmq: Crystal structure of Dot/Icm T4SS effector Ceg10(C159S)
Classification: TRANSFERASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-06-29
Authors: Ge, H.
PDB entry 9vmx: Human PIEZO1-E756del-MDFIC
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-06-29
Authors: Zhang, M.F., Pei, D.Q.
PDB entry 9vmy: Cryo-EM structure of 5-HT1AR-GoA in complex with TMU4142
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2025-06-29
Authors: Wang, C., Cao, C.
PDB entry 9vn5: Structure of WDR5 in complex with MBD3C R43K
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-06-30
Authors: Xu, L., Yang, Y.
PDB entry 9vnd: Structure of the Bacteroides fragilis NCTC9343 T6SS Hcp2-Hcp3 Heterohexamer in Complex with the Effector Bte1
Classification: STRUCTURAL PROTEIN
Source organism: Bacteroides fragilis NCTC 9343
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-06-30
Authors: Zheng, S.N., Chen, Z., Li, W.X., Gao, X.
PDB entry 9vne: Bacteroides fragilis NCTC9343 T6SS Hcp2-Hcp3 heterohexamer complex
Classification: STRUCTURAL PROTEIN
Source organism: Bacteroides fragilis NCTC 9343
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-06-30
Authors: Zheng, S.N., Chen, Z., Li, W.X., Gao, X.
PDB entry 9vnf: Cryo-EM structure of 5-HT1AR-GoA in complex with (S)-pindolol
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-06-30
Authors: Wang, C., Cao, C.
PDB entry 9vng: Small GTPase RhoA Y42C mutant in complex with covalent inhibitor
Classification: CELL INVASION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-06-30
Authors: Wu, H., Jiang, H., Luo, C.
PDB entry 9vnh: Structure of wild-type RhoA in complex with GDP and magnesium ion
Classification: CELL INVASION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-06-30
Authors: Wu, H., Luo, C.
PDB entry 9vni: Structure of the RhoA Y42C mutant featuring Thr37 coordination of magnesium ion
Classification: CELL INVASION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-06-30
Authors: Wu, H., Luo, C.
PDB entry 9vnj: Crystal structure of the transmembrane domain of trimeric autotransporter adhesin AtaA in complex with the N-terminal domain of TpgA
Classification: CELL ADHESION
Source organism: Acinetobacter sp. Tol 5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-06-30
Authors: Yoshimoto, S., Suzuki, A., Hiroshige, R., Hori, K.
PDB entry 9vnk: Cryo-EM structure of hnRAC1-2,8beta fibril polymorph2
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2025-06-30
Authors: Li, Y.S., Li, D.N., Dai, B.
PDB entry 9vnm: Cryo-EM structure of hnRAC1-2,8beta fibril polymorph1
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2025-06-30
Authors: Li, Y.S., Li, D.N., Dai, B.
PDB entry 9vnn: Cryo-EM structure of hnRAC1-2,8homobeta fibril
Classification: PROTEIN FIBRIL
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-06-30
Authors: Li, Y.S., Li, D.N., Dai, B.
PDB entry 9vno: The crystal structure of the Ehd3 tandem PHD-H3K4me1 complex.
Classification: GENE REGULATION
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-06-30
Authors: Li, Y.P., Dong, A.W.
PDB entry 9vnp: The complexes of IFN-gamma and A01BM-03 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2025-06-30
Authors: Wang, X., Zhang, L., Wang, H., Yu, J.
PDB entry 9vnq: Bacillus Subtilis Ku core homodimer complexed with double strand DNA
Classification: DNA BINDING PROTEIN
Source organism: Bacillus subtilis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-06-30
Authors: Kim, W.J., Kim, M.S.
PDB entry 9vnt: Cryo-EM structure of a human flippase mutant ATP11C Q79E-CDC50A in PtdSer-occluded E2P-AlF state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2025-07-01
Authors: Qian, Y., Abe, K.
PDB entry 9vnu: Crystal structure of chimeric AIR synthetase constructed from E. coli (residues 1-168) and Pyrococcus abyssi (residues 163-334)
Classification: LIGASE
Source organism: Escherichia coli; Pyrococcus abyssi GE5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-01
Authors: Chen, Y.H., Chen, C.J.
PDB entry 9vnv: Crystal structure of Pyrococcus abyssi AIR synthetase with an N-terminal 43-residues deletion
Classification: LIGASE
Source organism: Pyrococcus abyssi GE5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-07-01
Authors: Chen, Y.H., Chen, C.J.
PDB entry 9vnw: Crystal structure of Pyrococcus abyssi AIR synthetase with an N-terminal 54-residues deletion
Classification: LIGASE
Source organism: Pyrococcus abyssi GE5
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-07-01
Authors: Chen, Y.H., Chen, C.J.
PDB entry 9vnx: Crystal Structure of the mutant ROR gamma LBD With Compound 28
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-07-01
Authors: Akai, S., Nomura, A., Yamaguchi, K., Adachi, T.
PDB entry 9vny: Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with CYM5442
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2025-07-01
Authors: Yu, L.Y., Jiao, H.Z., Ti, R.J., Pang, B., Gan, B., Ren, R.B.
PDB entry 9vnz: Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with HY-X-1011
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-07-01
Authors: Yu, L.Y., Jiao, H.Z., Ti, R.J., Pang, B., Gan, B., Ren, R.B.
PDB entry 9vo0: Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with Ponesimod
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-07-01
Authors: Yu, L.Y., Jiao, H.Z., Ti, R.J., Pang, B., Gan, B., Ren, R.B.
PDB entry 9vo1: Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with SAR247799
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-07-01
Authors: Yu, L.Y., Jiao, H.Z., Ti, R.J., Pang, B., Gan, B., Ren, R.B.
PDB entry 9vo2: Cryo-EM structure of the OXGR1(CA)-Gq complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-07-01
Authors: Tang, X.J., Sun, J.P., Guo, L.L., Li, J., Deng, Z.L., Xiao, W.Q., Zhu, Y., Zhu, K.K.
PDB entry 9voa: Fasciola hepatica calcium binding protein FhCaBP4
Classification: CELL ADHESION
Source organism: Fasciola hepatica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-07-01
Authors: Shin, B.M.
PDB entry 9vog: Vitamin D receptor complex with a 5-{4-(m-carboran-1-yl)phenoxy}-4-hydroxypentanoic acid derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-07-01
Authors: Mudiyanselage, H.N.T.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9voh: Vitamin D receptor complex with a 4-(m-carboran-1-yl)phenoxyacetic acid derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-07-01
Authors: Mudiyanselage, H.N.T.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9voi: Vitamin D receptor complex with a 3-{4-(m-carboran-1-yl)phenoxy}propanoic acid derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-07-01
Authors: Mudiyanselage, H.N.T.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9voj: Vitamin D receptor complex with a 4-{4-(m-carboran-1-yl)phenoxy}butanoic acid derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-07-01
Authors: Mudiyanselage, H.N.T.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9vok: Vitamin D receptor complex with a 5-{4-(m-carboran-1-yl)phenoxy}pentanoic acid derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2025-07-01
Authors: Mudiyanselage, H.N.T.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9vol: Vitamin D receptor complex with a 4-{4-(m-carboran-1-yl)-2-methylphenoxy}butanoic acid derivative
Classification: TRANSCRIPTION
Source organism: Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-07-01
Authors: Mudiyanselage, H.N.T.N., Hanazono, Y., Ito, N., Kagechika, H., Fujii, S.
PDB entry 9vor: Cryo-EM Structure of Human GPR158 Bound to Nanobody Nb20
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2025-07-02
Authors: Laboute, T., Zucca, S., Sial, M., Sharma, M., Brunori, G., Singh, S., Singh, A., Martemyanov, K.
PDB entry 9vp0: Structural insights into IL-31 signaling inhibition by a neutralization antibody
Classification: CYTOKINE/IMMUNE SYSTEM
Source organism: Canis lupus familiaris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-02
Authors: Guo, T., Gao, F., Xiao, H.
PDB entry 9vp2: CryoEM structure of cyclised H-pilus (D69A)
Classification: PROTEIN FIBRIL
Source organism: Salmonella enterica subsp. enterica serovar Typhi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.15 Å
Deposited: 2025-07-02
Authors: Ishimoto, N., Beis, K.
PDB entry 9vp3: CryoEM structure of cyclised H-pilus (D69N)
Classification: PROTEIN FIBRIL
Source organism: Salmonella enterica subsp. enterica serovar Typhi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-07-02
Authors: Ishimoto, N., Beis, K.
PDB entry 9vp4: CryoEM structure of cyclised H-pilus (D69R)
Classification: PROTEIN FIBRIL
Source organism: Salmonella enterica subsp. enterica serovar Typhi
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-07-02
Authors: Ishimoto, N., Beis, K.
PDB entry 9vp5: Glucose-6-phosphate dehydrogenase from Leishmania donovani
Classification: OXIDOREDUCTASE
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-02
Authors: Jakkula, P., Qureshi, I.A.
PDB entry 9vp6: Glucose-6-phosphate dehydrogenase from Leishmania donovani in complex with substrate
Classification: OXIDOREDUCTASE
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-02
Authors: Jakkula, P., Qureshi, I.A.
PDB entry 9vp7: Glucose-6-phosphate dehydrogenase from Leishmania donovani in complex with pseudo substrate
Classification: OXIDOREDUCTASE
Source organism: Leishmania donovani
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2025-07-02
Authors: Jakkula, P., Qureshi, I.A.
PDB entry 9vp8: Crystal structure of YdjB from Salmonella enterica subsp. enterica serovar Typhi
Classification: DE NOVO PROTEIN
Source organism: Salmonella enterica subsp. enterica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-07-02
Authors: Kang, Y.J., Park, H.H., Kim, J.H.
PDB entry 9vpe: CryoEM structure of cyclised H-pilus (D69G)
Classification: PROTEIN FIBRIL
Source organism: Salmonella enterica subsp. enterica serovar Typhi
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-07-03
Authors: Ishimoto, N., Beis, K.
PDB entry 9vpf: Crystal structure of D-aspartate oxidase from Cryptococcus humicola UJ1.
Classification: OXIDOREDUCTASE
Source organism: Vanrija humicola
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-07-03
Authors: Goto, M., Nonaka, R., Mizobuchi, T., Imanishi, D., Takahashi, S.
PDB entry 9vpq: Crystal structure of METTL9 in complex with compound 15k
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-07-03
Authors: Yao, R., Zhang, G., Fan, D., Zhang, H., Li, L., Yang, S.
PDB entry 9vpr: Crystal structure of the C131A mutant of Trypanosoma brucei DHODH in FMN-oxidized, ligand-free form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-07-04
Authors: Kubota, T., Tani, O., Yamasaki, K.
PDB entry 9vps: Crystal structure of the C131A mutant of Trypanosoma brucei DHODH in FMN-reduced, ligand-free form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-07-04
Authors: Kubota, T., Tani, O., Yamasaki, K.
PDB entry 9vpt: Crystal structure of the C131A mutant of Trypanosoma brucei DHODH in FMN-oxidized, dihydroorotate-bound form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-07-04
Authors: Kubota, T., Yamasaki, T., Yamasaki, K.
PDB entry 9vpu: Crystal structure of the C131A mutant of Trypanosoma brucei DHODH in FMN-reduced, dihydroorotate-bound form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-04
Authors: Kubota, T., Yamasaki, T., Yamasaki, K.
PDB entry 9vpv: Crystal structure of the C131A mutant of Trypanosoma brucei DHODH in FMN-oxidized, orotate-bound form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-04
Authors: Kubota, T., Tani, O., Yamasaki, K.
PDB entry 9vpw: Crystal structure of the C131A mutant of Trypanosoma brucei DHODH in FMN-reduced, orotate-bound form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-04
Authors: Kubota, T., Tani, O., Yamasaki, K.
PDB entry 9vpx: Crystal structure of the C131A mutant of Trypanosoma brucei DHODH in FMN-oxidized, fumarate-bound form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2025-07-04
Authors: Kubota, T., Tani, O., Yamasaki, K.
PDB entry 9vpy: Crystal structure of the C131A mutant of Trypanosoma brucei DHODH in FMN-reduced, fumarate-bound form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2025-07-04
Authors: Kubota, T., Tani, O., Yamasaki, K.
PDB entry 9vpz: Crystal structure of wild-type Trypanosoma brucei DHODH in FMN-reduced, ligand-free form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-07-04
Authors: Kubota, T., Tani, O., Yamasaki, K.
PDB entry 9vq0: Crystal structure of wild-type Trypanosoma brucei DHODH in FMN-oxidized, orotate-bound form
Classification: FLAVOPROTEIN
Source organism: Trypanosoma brucei brucei TREU927
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-07-04
Authors: Kubota, T., Tani, O., Yamasaki, K.
PDB entry 9vq1: NMR solution structures of BRD4 ET domain in complex with ASXL1 peptide
Classification: PROTEIN BINDING
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2025-07-04
Authors: Zeng, L., Zhou, M.-M.
PDB entry 9vq2: Cryo-EM structure of a human flippase mutant ATP11C Q79A-CDC50A in the PtdSer-occluded E2-AlF state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-04
Authors: Qian, Y., Abe, K.
PDB entry 9vq3: Crystal structure of human phosphodiesterase 10A in complex with (6-fluoro-2-(1-(4-methylquinazolin-2-yl)azetidin-3-yl)imidazo[1,2-a]pyridin-3-yl)(4,7-diazaspiro[2.5]octan-7-yl)methanone
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-04
Authors: Zhang, F.C., Huang, Y.Y., Luo, H.B., Guo, L.
PDB entry 9vq6: Strcture of Nanobody (NB) specific to Interleukin-6
Classification: IMMUNE SYSTEM
Source organism: Camelus dromedarius
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2025-07-04
Authors: Talwar, C.S., Ahn, W.C., Lee, S.J., Woo, E.J.
PDB entry 9vqk: crystal structure of an (R)-selective omega-transaminase from Ancylobacter lacus
Classification: TRANSFERASE
Source organism: Ancylobacter lacus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-07-05
Authors: Lin, S., Zhang, Y.
PDB entry 9vql: Cryo-EM structure of the dimeric Elapor1 mutant
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2025-07-05
Authors: Ma, J., Zheng, S.
PDB entry 9vqm: Cryo-EM structure of Elapor1WT in tetrameric form
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-07-05
Authors: Ma, J., Zheng, S.
PDB entry 9vqn: Crystal structure of Se-Met SSA1633 from Streptococcus sanguinis (Phase determination model)
Classification: CELL ADHESION
Source organism: Streptococcus sanguinis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-07-05
Authors: Takebe, K., Suzuki, M., Nakata, M.
PDB entry 9vr0: NMR solution structure of termini-truncated oxidized cytochrome c552 from Thioalkalivibrio paradoxus
Classification: ELECTRON TRANSPORT
Source organism: Thioalkalivibrio paradoxus ARh 1
Experimental method: SOLUTION NMR
Deposited: 2025-07-05
Authors: Britikov, V.V., Britikova, E.V., Rakitina, T.V., Dergousova, N.I., Tikhonova, T.V., Popov, V.O., Bocharov, E.V.
PDB entry 9vrb: Cryo-EM structure of ATP-bound Oryza sativa MRP5 with E1424Q mutation
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Deposited: 2025-07-06
Authors: Zou, J., Zhang, J., Liu, Z.
PDB entry 9vrc: Cryo-EM structure of Oryza sativa multidrug resistance protein 5 (MRP5)
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2025-07-06
Authors: Zou, J., Zhang, J., Liu, Z.
PDB entry 9vrd: Cryo-EM structure of rice multidrug resistance protein 5 (MRP5) with InsP6 in state A
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-07-06
Authors: Zou, J., Zhang, J., Liu, Z.
PDB entry 9vre: Cryo-EM structure of rice multidrug resistance protein 5 (MRP5) with InsP6 in state B
Classification: TRANSPORT PROTEIN
Source organism: Oryza sativa Japonica Group
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-07-06
Authors: Zou, J., Zhang, J., Liu, Z.
PDB entry 9vrr: Crystal structure of human PTPN2 with inhibitor WS3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-07-07
Authors: Tong, C.
PDB entry 9vrs: Crystal structure of human PTPN2 with inhibitor WS19
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-07
Authors: Tong, C.
PDB entry 9vs1: Crystal structure of SARS-CoV-2 3CL protease in complex with compound 15
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-07-08
Authors: Yamamoto, S., Taoda, Y.
PDB entry 9vsa: Structure of the wild-type CAX1 in Arabidopsis thaliana in the apo state
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-07-08
Authors: Sun, L., Wang, K.
PDB entry 9vsc: Structure of the phosphomimetic mutant CAX1 in Arabidopsis thaliana in the Calcium-bound state
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-08
Authors: Sun, L., Wang, K.
PDB entry 9vsd: Structure of the phosphomimetic mutant CAX1 in Arabidopsis thaliana in the apo state
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-08
Authors: Sun, L., Wang, K.
PDB entry 9vsj: Crystal structure of the genetically-encoded green calcium sensor icBTnC2 in its calcium bound-state
Classification: FLUORESCENT PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2025-07-08
Authors: Boyko, K.M., Nikolaeva, A.Y., Dorovatovskii, P.V., Vlaskina, A.V., Agapova, Y.K., Petrenko, D.E., Subach, O.M., Chelykhova, S.A., Popov, V.O., Subach, F.V.
PDB entry 9vsl: Cryo-EM structrure of a human flippase mutant ATP11C Q79E-CDC50A in PtdCho-open E2-BeF state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-07-09
Authors: Qian, Y., Abe, K.
PDB entry 9vsm: Crystal structure of cystathionine gamma-synthase from Lactobacillus plantarum complexed with the cystathionine-bound external aldimine
Classification: TRANSFERASE
Source organism: Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2025-07-09
Authors: Oda, K., Matoba, Y.
PDB entry 9vsp: The DCY1020-bound structure of TMEM175
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-09
Authors: Zhu, X., Liu, H., Yin, W.
PDB entry 9vsq: The TUG-891-bound structure of TMEM175
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2025-07-09
Authors: Zhu, X., Liu, H., Yin, W.
PDB entry 9vsr: The DCY1040 and TUG-891-bound structure of TMEM175
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-07-09
Authors: Zhu, X., Liu, H., Yin, W.
PDB entry 9vsx: Peptide Asparaginyl Ligases from Viola dissecta
Classification: LIGASE
Source organism: Viola dissecta
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2025-07-09
Authors: Hemu, X.Y., Du, W.Y., Qi, S.
PDB entry 9vtk: Structure of the family PL40 Ulvan Lyase Uly1040
Classification: LYASE
Source organism: Alteromonas macleodii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2025-07-10
Authors: Wang, H.Q., Suo, C.L., Wang, P.
PDB entry 9vtp: Target DNA-bound type I-F3 TniQ-Cascade of Vibrio parahaemolyticus in partial R-loop state
Classification: DNA BINDING PROTEIN
Source organism: Vibrio parahaemolyticus RIMD 2210633; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2025-07-11
Authors: Ishihara, K., Numata, T.
PDB entry 9vtq: Target DNA-bound type I-F3 TniQ-Cascade of Vibrio parahaemolyticus in full R-loop state 1
Classification: DNA BINDING PROTEIN
Source organism: Vibrio parahaemolyticus RIMD 2210633; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2025-07-11
Authors: Ishihara, K., Numata, T.
PDB entry 9vtr: Target DNA-bound type I-F3 TniQ-Cascade of Vibrio parahaemolyticus in full R-loop state 2
Classification: DNA BINDING PROTEIN
Source organism: Vibrio parahaemolyticus RIMD 2210633; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-07-11
Authors: Ishihara, K., Numata, T.
PDB entry 9vtv: Chitinase TfeC from Yersinia pseudotuberculosis
Classification: HYDROLASE
Source organism: Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-07-11
Authors: Zhu, L.F., Zuo, Y.X., Cui, R., Li, D.F., Liu, S.J., Shen, X.H.
PDB entry 9vu6: Cryo-EM structure of unmethylated DNA-bound Tetrahymena DNA methyltransferase complex MTA1c (MTA9-B)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Tetrahymena thermophila SB210; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-07-12
Authors: Xu, Q., Shi, Z.B.
PDB entry 9vu9: channel D complex with 4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-07-12
Authors: Jiang, D.H., Ma, B.
PDB entry 9vua: channel A complex with 1
Classification: MEMBRANE PROTEIN
Source organism: Apis mellifera; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-07-12
Authors: Jiang, D.H., Ma, B.
PDB entry 9vub: channel C complex with 3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.35 Å
Deposited: 2025-07-12
Authors: Jiang, D.H., Ma, B.
PDB entry 9vuc: channel B complex with 2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2025-07-12
Authors: Jiang, D.H., Ma, B.
PDB entry 9vun: Crystal structure of the DNA/RNA hybrid, D(CGTCTCCAGGCAAC)/R(GUUGCCUGGAGACG)
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2025-07-13
Authors: Ren, Y., Huang, L.
PDB entry 9vuo: Crystal structure of the DNA/RNA hybrid with Tica
Classification: DNA-RNA HYBRID
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2025-07-13
Authors: Ren, Y., Huang, L.
PDB entry 9vut: Crystal structure of SADS-CoV main protease (Lys35Val)
Classification: VIRAL PROTEIN
Source organism: Swine acute diarrhea syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.14 Å
Deposited: 2025-07-14
Authors: Zeng, R., Lei, J.
PDB entry 9vuu: Crystal structure of SADS-CoV main protease (Lys35Val) in complex with 27h
Classification: VIRAL PROTEIN
Source organism: Swine acute diarrhea syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-14
Authors: Zeng, R., Lei, J.
PDB entry 9vuv: Crystal structure of SADS-CoV main protease (Lys35Val/Cys224Ser) in complex with SY110
Classification: VIRAL PROTEIN
Source organism: Swine acute diarrhea syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-14
Authors: Zeng, R., Lei, J.
PDB entry 9vuw: Crystal structure of SARS-CoV-2 main protease with a deletion of Asn51
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-07-14
Authors: Zeng, R., Lei, J.
PDB entry 9vux: Crystal structure of SADS-CoV main protease with an added Asn51
Classification: VIRAL PROTEIN
Source organism: Swine acute diarrhea syndrome coronavirus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2025-07-14
Authors: Zeng, R., Lei, J.
PDB entry 9vuz: an engineered light chain single-domain antibody targeting at mouse CD16
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2025-07-14
Authors: Wang, M.K., Xu, Q.Y., Yang, Z.L., Ying, T.L., Wu, Y.L.
PDB entry 9vv4: Research on the Structure and Function of Thioredoxin Reductase NTRC
Classification: OXIDOREDUCTASE
Source organism: Nicotiana benthamiana
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å
Deposited: 2025-07-14
Authors: Zhang, J., Chen, Z.
PDB entry 9vva: UP1 in complex with RNA dinucleotide
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-07-15
Authors: Panchariya, L., Kumar, A., Arockiasamy, A., Jain, N.
PDB entry 9vvg: Cryo-EM structure of the erlin1/2 complex purified using GDN and CHS
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-07-15
Authors: Yan, L., Xu, Z., Gao, N.
PDB entry 9vvj: Cryo-EM structure of the erlin1/2 complex purified using DDM and GDN
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-07-15
Authors: Yan, L., Gao, N.
PDB entry 9vvn: Crystal structure of computationally designed protein VTP-4
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-07-16
Authors: Tang, X., Li, Y.H., Xu, Y.L., Kou, L.Y., Ji, P.F.
PDB entry 9vvo: cryo-EM structure of gastric proton pump bound to YK01
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-07-16
Authors: Saito, H., Abe, K.
PDB entry 9vvp: Core proteins of the bacteriophage E1004
Classification: VIRAL PROTEIN
Source organism: Escherichia phage
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2025-07-16
Authors: Sun, B.N., Liu, H.R.
PDB entry 9vvq: Structure of the bacteriophage E1004 capsid
Classification: VIRAL PROTEIN
Source organism: Escherichia phage
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2025-07-16
Authors: Sun, B.N., Liu, H.R.
PDB entry 9vvr: Structure of the bacteriophage E1004 tail
Classification: VIRAL PROTEIN
Source organism: Escherichia phage
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å
Deposited: 2025-07-16
Authors: Sun, B.N., Liu, H.R.
PDB entry 9vvs: NAD(P)-dependent oxidoreductase from Kutzneria albida
Classification: OXIDOREDUCTASE
Source organism: Kutzneria albida DSM 43870
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-07-16
Authors: Huang, L., Fu, H.G., Yao, Z.C.
PDB entry 9vw7: NAD(P)-dependent oxidoreductase from Kutzneria albida
Classification: OXIDOREDUCTASE
Source organism: Kutzneria albida DSM 43870
Experimental method: X-RAY DIFFRACTION
Resolution: 2.499 Å
Deposited: 2025-07-16
Authors: Huang, L., Fu, H.G., Yao, Z.C.
PDB entry 9vwb: HamA, a Heme-Oxygenase-Like Enzyme
Classification: METAL BINDING PROTEIN
Source organism: Burkholderia cenocepacia H111
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-16
Authors: Su, B.B., Zhang, T.T., Yu, Y., Liu, H.P.
PDB entry 9vwt: The catalytic domain of human plasma kallikrein with peptide inhibitor 070
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2025-07-17
Authors: Xu, M.
PDB entry 9vwu: Crystal structure of AetF-V220I in complex with FAD and L-tryptophan
Classification: FLAVOPROTEIN
Source organism: Aetokthonos hydrillicola Thurmond2011
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-07-17
Authors: Li, H., Huang, J.-W., Dai, L., Chen, C.-C., Guo, R.-T.
PDB entry 9vwv: Crystal structure of AetF-S523A in complex with FAD and L-tryptophan
Classification: FLAVOPROTEIN
Source organism: Aetokthonos hydrillicola Thurmond2011
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-07-17
Authors: Li, H., Huang, J.-W., Dai, L., Chen, C.-C., Guo, R.-T.
PDB entry 9vww: Crystal structure of AetF-V220I/S523A in complex with FAD and L-tryptophan
Classification: FLAVOPROTEIN
Source organism: Aetokthonos hydrillicola Thurmond2011
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2025-07-17
Authors: Li, H., Huang, J.-W., Dai, L., Chen, C.-C., Guo, R.-T.
PDB entry 9vwx: Crystal structure of AetF-L183F/V220I/S523A in complex with FAD and L-tryptophan
Classification: FLAVOPROTEIN
Source organism: Aetokthonos hydrillicola Thurmond2011
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2025-07-17
Authors: Li, H., Huang, J.-W., Dai, L., Chen, C.-C., Guo, R.-T.