LiteFold/PDB huggingface dataset:
PDB entry 8jka: SP1746 in complex with AMP
Classification: HYDROLASE
Source organism: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-06-01
Authors: Jin, Y., Niu, L., Ke, J.
PDB entry 8jkb: Cryo-EM structure of KCTD5 in complex with Gbeta gamma subunits
Classification: PROTEIN BINDING
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-06-01
Authors: Zheng, S., Jiang, W., Wang, W., Kong, Y.
PDB entry 8jkc: Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-06-01
Authors: Shin, S.C.
PDB entry 8jkd: Cryo-EM structure of CCHFV envelope protein Gc trimer in complex with Gc13 Fab
Classification: VIRAL PROTEIN
Source organism: Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970); Crimean-Congo hemorrhagic fever virus strain IbAr10200
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-06-01
Authors: Chong, T., Cao, S.
PDB entry 8jke: AfsR(T337A) transcription activation complex
Classification: GENE REGULATION/DNA
Source organism: Streptomyces coelicolor A3(2); SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2023-06-01
Authors: Wang, Y., Zheng, J.
PDB entry 8jkf: CryoEM structure of sNS1 complexed with Fab 3G2
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2023-06-01
Authors: Chen, Q., Qi, P.
PDB entry 8jkg: Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-01
Authors: Shin, S.C.
PDB entry 8jkh: CryoEM structure of sNS1 complexed with Fab 4B8
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2023-06-01
Authors: Chen, Q., Pan, Q.
PDB entry 8jki: Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-06-01
Authors: Shin, S.C.
PDB entry 8jkk: Crystal Structure of the dioxygenase CcTet from Coprinopsis cinerea bound to 12bp 5-methylcytosine (5mC) containing duplex DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-06-01
Authors: Zhang, L., Zhang, L.
PDB entry 8jkl: IRF4 DNA-binding domain bound to an DNA containing GATA motif
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2023-06-01
Authors: Wang, G., Feng, X., Ding, J.
PDB entry 8jkm: RN-1747 bound state of mTRPV4
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.98 Å
Deposited: 2023-06-01
Authors: Zhen, W.X., Yang, F.
PDB entry 8jkn: T95R mutant IRF4 DNA-binding domain bound to an DNA containing GAAA motif
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2023-06-01
Authors: Wang, G., Feng, X., Ding, J.
PDB entry 8jko: T95R mutant IRF4 DNA-binding domain bound to an DNA containing GATA motif
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-06-01
Authors: Wang, G., Feng, X., Ding, J.
PDB entry 8jkp: SP1746 in complex with dTMP
Classification: HYDROLASE
Source organism: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-06-01
Authors: Jin, Y., Ke, J., Niu, L.
PDB entry 8jkq: T95R mutant IRF4 DNA-binding domain bound to an DNA containing GACA motif
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å
Deposited: 2023-06-01
Authors: Wang, G., Feng, X., Ding, J.
PDB entry 8jkr: SP1746 in complex with UMP
Classification: HYDROLASE
Source organism: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-01
Authors: Jin, Y., Niu, L., Ke, J.
PDB entry 8jks: T95R mutant IRF4 DNA-binding domain bound to an DNA containing GAGA motif
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2023-06-01
Authors: Wang, G., Feng, X., Ding, J.
PDB entry 8jkt: Crystal structure of feline aminopeptidase N ectodomain
Classification: HYDROLASE
Source organism: Felis catus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-01
Authors: Tan, Y.B., Shi, Y.J., Peng, G.Q.
PDB entry 8jku: Ancestral imine reductase N559
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2023-06-01
Authors: Zhu, X.X., Zheng, G.W.
PDB entry 8jkv: membrane proteins
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-06-02
Authors: Yu, J., Ge, J.P., Ruisheng, X.
PDB entry 8jkz: Cryo-EM structure of the prokaryotic SPARSA system complex
Classification: ANTIVIRAL PROTEIN
Source organism: Geobacter sulfurreducens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-02
Authors: Xu, X., Zhen, X., Long, F.
PDB entry 8jl0: Cryo-EM structure of the prokaryotic SPARSA system complex
Classification: ANTIVIRAL PROTEIN/DNA/RNA
Source organism: Geobacter sulfurreducens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-06-02
Authors: Xu, X., Zhen, X., Long, F.
PDB entry 8jl1: membrane proteins
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-06-02
Authors: Yu, J., Ge, J.P., Xu, R.S.
PDB entry 8jl2: Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jl3: membrane proteins
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-06-02
Authors: Yu, J., Ge, J.P., Xu, R.S.
PDB entry 8jl4: membrane proteins
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.68 Å
Deposited: 2023-06-02
Authors: Yu, J., Ge, J.P., Xu, R.S.
PDB entry 8jl5: Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jl6: Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jl7: Crystal structure of the Green fluorescent protein SEA227D variant at pH 8.0
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jl8: Crystal structure of the collagen binding domain of Cnm from Streptococcus mutans
Classification: PROTEIN BINDING
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-06-02
Authors: Tanaka, S.-i., Hirata, A., Takano, K.
PDB entry 8jl9: Cryo-EM structure of the human nucleosome with scFv
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Deposited: 2023-06-02
Authors: Oishi, T., Hatazawa, S., Kujirai, T., Kato, J., Kobayashi, Y., Ogasawara, M., Akatsu, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8jla: Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-06-02
Authors: Oishi, T., Hatazawa, S., Kujirai, T., Kato, J., Kobayashi, Y., Ogasawara, M., Akatsu, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8jlb: Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2023-06-02
Authors: Oishi, T., Hatazawa, S., Kujirai, T., Kato, J., Kobayashi, Y., Ogasawara, M., Akatsu, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8jlc: Cryo-EM structure of SV2A in complex with BoNT/A2 Hc and levetiracetam
Classification: TRANSPORT PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2023-06-02
Authors: Yamagata, A.
PDB entry 8jld: Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
Classification: GENE REGULATION/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2023-06-02
Authors: Oishi, T., Hatazawa, S., Kujirai, T., Kato, J., Kobayashi, Y., Ogasawara, M., Akatsu, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8jle: Cryo-EM structure of SV2A LD4 in complex with BoNT/A2 Hc in the SV2A-levetiracetam-BoNT/A2 Hc complex
Classification: TRANSPORT PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2023-06-02
Authors: Yamagata, A.
PDB entry 8jlf: Cryo-EM structure of SV2A in complex with BoNT/A2 Hc
Classification: TRANSPORT PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2023-06-02
Authors: Yamagata, A.
PDB entry 8jlg: Cryo-EM structure of SV2A in complex with BoNT/A2 Hc
Classification: TRANSPORT PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2023-06-02
Authors: Yamagata, A.
PDB entry 8jlh: Cryo-EM structure of SV2A dimer in complex with BoNT/A2 Hc and levetiracetam
Classification: TRANSPORT PROTEIN
Source organism: Clostridium botulinum; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-02
Authors: Yamagata, A.
PDB entry 8jli: Cryo-EM structure of SV2A dimer in complex levetiracetam
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2023-06-02
Authors: Yamagata, A.
PDB entry 8jlj: T1AM-bound mTAAR1-Gs protein complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-06-02
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jlk: Ulotaront(SEP-363856)-bound mTAAR1-Gs protein complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2023-06-02
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jll: Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jlm: Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 4.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jln: T1AM-bound hTAAR1-Gs protein complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2023-06-02
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jlo: Ulotaront(SEP-363856)-bound hTAAR1-Gs protein complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.52 Å
Deposited: 2023-06-02
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jlp: Ralmitaront(RO-6889450)-bound hTAAR1-Gs protein complex
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2023-06-02
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jlq: Fenoldopam-bound hTAAR1-Gs protein complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-06-02
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jlr: A77636-bound hTAAR1-Gs protein complex
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-02
Authors: Xu, Z., Guo, L.L., Zhao, C., Shen, S.Y., Sun, J.P., Shao, Z.H.
PDB entry 8jls: Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 6.0
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jlt: Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 7.0
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jlu: Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5
Classification: FLUORESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-06-02
Authors: Shin, S.C.
PDB entry 8jlv: Beneficial flip of substrate orientation enable determine substrate specificity for zearalenone lactone hydrolase
Classification: HYDROLASE
Source organism: Exophiala aquamarina CBS 119918
Experimental method: X-RAY DIFFRACTION
Resolution: 2.99864 Å
Deposited: 2023-06-02
Authors: Xiang, L., Wang, M., Zhang, G., Zhou, J.
PDB entry 8jlw: CCHFV envelope protein Gc in complex with Gc8
Classification: VIRAL PROTEIN
Source organism: Crimean-Congo hemorrhagic fever orthonairovirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-03
Authors: Chong, T., Cao, S.
PDB entry 8jlx: CCHFV envelope protein Gc in complex with Gc13
Classification: VIRAL PROTEIN
Source organism: Crimean-Congo hemorrhagic fever orthonairovirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-03
Authors: Chong, T., Cao, S.
PDB entry 8jly: Structure of nanobody in complex with alpha-synuclein peptide
Classification: IMMUNE SYSTEM
Source organism: Camelus dromedarius; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2023-06-04
Authors: Islam, Z., Kolatkar, P.R.
PDB entry 8jlz: ST1936-5HT6R complex
Classification: MEMBRANE PROTEIN
Source organism: Camelus bactrianus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2023-06-04
Authors: Wen, X., Sun, J.
PDB entry 8jm0: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde from the cyanohydrin cleavage
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm1: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant from Prunus communis mutant L331A complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (Form A)
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm2: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (Form B)
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm3: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 4H-benzo[d][1,3]dioxine-6-carbaldehyde
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm4: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 2-methyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm5: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A/S333V/P340L from Prunus communis
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm6: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A/S333V/P340L from Prunus communis complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (catalytic conformation)
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm7: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A/S333V/P340L from Prunus communis complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (noncatalytic conformation)
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm8: Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with (R)-2-(2,2-dimethyl-4H-benzo[d][1,3]dioxin-6-yl)-2-hydroxyacetonitrile
Classification: LYASE
Source organism: Prunus dulcis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-06-04
Authors: Zheng, Y.C., Li, F.L., Yu, H.L., Xu, J.H.
PDB entry 8jm9: The cryo-EM structure of insect gustatory receptor Gr43a from Drosophila melanogaster
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-06-04
Authors: Ma, D., Guo, J.
PDB entry 8jma: The cryo-EM structure of insect gustatory receptor Gr43a from Drosophila melanogaster in complex with fructose
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-06-04
Authors: Ma, D., Guo, J.
PDB entry 8jme: The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-06-04
Authors: Ma, D., Guo, J.
PDB entry 8jmh: The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster in complex with sucrose
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2023-06-04
Authors: Ma, D., Guo, J.
PDB entry 8jmi: The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster in complex with maltose
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2023-06-04
Authors: Ma, D., Guo, J.
PDB entry 8jmj: Structure of Helicobacter pylori Soj-DNA-Spo0J complex
Classification: DNA BINDING PROTEIN
Source organism: Helicobacter pylori 26695; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2023-06-05
Authors: Wu, C.T., Chu, C.H., Sun, Y.J.
PDB entry 8jmk: Structure of Helicobacter pylori Soj mutant, D41A bound to DNA
Classification: DNA BINDING PROTEIN
Source organism: Helicobacter pylori 26695; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-06-05
Authors: Wu, C.T., Chu, C.H., Sun, Y.J.
PDB entry 8jml: Structure of Helicobacter pylori Soj protein mutant, D41A
Classification: DNA BINDING PROTEIN
Source organism: Helicobacter pylori 26695
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-05
Authors: Wu, C.T., Chu, C.H., Sun, Y.J.
PDB entry 8jmm: Structure of XBB spike protein (S) dimer-trimer in complex with bispecific antibody G7-Fc at 3.75 Angstroms resolution.
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-06-05
Authors: Hao, A., Mao, Q., Chen, Z., Huang, J., Sun, L.
PDB entry 8jmn: Cryo-EM structure of the gastric proton pump with bound DQ-21
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2023-06-05
Authors: Abe, K., Yokoshima, S., Yoshimori, A.
PDB entry 8jmo: Structure of a leaf-branch compost cutinase, ICCG in complex with 4-((4-Hydroxybutoxy)carbonyl)benzoic acid
Classification: HYDROLASE
Source organism: unidentified prokaryotic organism
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-06-05
Authors: Yang, Y., Xue, T., Zheng, Y., Cheng, S., Guo, R.-T., Chen, C.-C.
PDB entry 8jmp: Structure of a leaf-branch compost cutinase, ICCG in complex with 1,4-butanediol terephthalate
Classification: HYDROLASE
Source organism: unidentified prokaryotic organism
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-05
Authors: Yang, Y., Xue, T., Zheng, Y., Cheng, S., Guo, R.-T., Chen, C.-C.
PDB entry 8jmq: Crystal structure of hinokiresinol synthase
Classification: BIOSYNTHETIC PROTEIN
Source organism: Asparagus officinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-05
Authors: Ding, Y., Ushimaru, R., Mori, T., Abe, I.
PDB entry 8jmr: Crystal structure of hinokiresinol synthase in complex with 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one
Classification: BIOSYNTHETIC PROTEIN
Source organism: Asparagus officinalis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-05
Authors: Ding, Y., Ushimaru, R., Mori, T., Abe, I.
PDB entry 8jms: Crystal structure of BelL from Streptomyces cavourensis
Classification: OXIDOREDUCTASE
Source organism: Streptomyces cavourensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-06-05
Authors: Shimo, S., Ushimaru, R., Mori, T., Abe, I.
PDB entry 8jmt: Structure of the adhesion GPCR ADGRL3 in the apo state
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2023-06-05
Authors: Tao, Y., Guo, Q., He, B., Zhong, Y.
PDB entry 8jmv: Flagellar fibrils from Bacillus amyloliquefaciens
Classification: PROTEIN FIBRIL
Source organism: Bacillus amyloliquefaciens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-05
Authors: Cao, Q., Cheng, Y.
PDB entry 8jmw: Fibril form of serine peptidase Vpr
Classification: PROTEIN FIBRIL
Source organism: Bacillus amyloliquefaciens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-05
Authors: Cao, Q., Cheng, Y.
PDB entry 8jmx: The crystal structure of human aurka kinase domain in complex with AURKA-A2
Classification: CYTOKINE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9502 Å
Deposited: 2023-06-05
Authors: Zhu, C.J., Zhang, Z.M.
PDB entry 8jmy: Crystal structure of Rv2186c in Mycobacterium tuberculosis
Classification: LIPID BINDING PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.563 Å
Deposited: 2023-06-05
Authors: Yan, L., Zhang, R.
PDB entry 8jmz: FGFR1 kinase domain with sulfatinib
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.988 Å
Deposited: 2023-06-05
Authors: Chen, X.J., Lin, Q.M., Chen, Y.H.
PDB entry 8jn0: N/F domain of alkaline amylase Amy703
Classification: HYDROLASE
Source organism: Alkalihalophilus pseudofirmus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22826 Å
Deposited: 2023-06-05
Authors: Xiang, L., Zhang, G., Zhou, J.
PDB entry 8jn1: Cryo-EM structure of dengue virus serotype 3 strain EHIE46200Y19 in complex with human antibody DENV-115 IgG at 4 deg C (subparticle LLR-LRR)
Classification: VIRUS
Source organism: Dengue virus type 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-06
Authors: Fibriansah, G., Ng, T.S., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8jn2: Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-115 Fab at 4 deg C (subparticle LLR-LRR)
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Dengue virus type 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-06-06
Authors: Fibriansah, G., Ng, T.S., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8jn3: Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-115 Fab at 37 deg C (subparticle LLR-LRR)
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Dengue virus type 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.4 Å
Deposited: 2023-06-06
Authors: Fibriansah, G., Ng, T.S., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8jn4: Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-290 Fab at 4 deg C (subparticle LLR-LRR)
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Dengue virus type 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-06
Authors: Fibriansah, G., Ng, T.S., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8jn5: Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-290 Fab at 37 deg C (subparticle LLR-LRR)
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Dengue virus type 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-06
Authors: Fibriansah, G., Ng, T.S., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8jn6: Cryo-EM structure of the small tail club shape particle of dengue virus serotype 3 strain CH53489 in complex with human antibody DENV-290 Fab at 37 deg C
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Dengue virus type 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.8 Å
Deposited: 2023-06-06
Authors: Fibriansah, G., Ng, T.S., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8jn7: Cryo-EM structure of the big tail club shape particle of dengue virus serotype 3 strain CH53489 in complex with human antibody DENV-290 Fab at 37 deg C
Classification: VIRUS/IMMUNE SYSTEM
Source organism: dengue virus type 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 11 Å
Deposited: 2023-06-06
Authors: Fibriansah, G., Ng, T.S., Tan, A.W.K., Shi, J., Lok, S.M.
PDB entry 8jn8: Crystal structure of c-Src in complex with covalent inhibitor DC-Srci-6668
Classification: ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.902 Å
Deposited: 2023-06-06
Authors: Zhang, H.M., Luo, C.
PDB entry 8jn9: Crystal structure of c-Src in complex with covalent inhibitor LW-Srci-8
Classification: ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.724 Å
Deposited: 2023-06-06
Authors: Zhang, H.M., Luo, C.
PDB entry 8jna: CRAF ras-binding domain chimera, apo form
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-06-06
Authors: Kawamura, T., Kumasaka, T.
PDB entry 8jnb: CRAF ras-binding domain chimera, ligand complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2023-06-06
Authors: Kawamura, T., Kumasaka, T.
PDB entry 8jnc: Crystal structure of cytochrome P450 IkaD from Streptomyces sp. ZJ306, in complex with the substrate 10-epi-maltophilin
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. ZJ306
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-06
Authors: Zhang, Y.L., Zhang, L.P., Zhang, C.S.
PDB entry 8jnd: The cryo-EM structure of the nonameric RAD51 ring bound to the nucleosome with the linker DNA binding
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2023-06-06
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8jne: The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome without the linker DNA binding
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.68 Å
Deposited: 2023-06-06
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8jnf: The cryo-EM structure of the RAD51 filament bound to the nucleosome
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.91 Å
Deposited: 2023-06-06
Authors: Shioi, T., Hatazawa, S., Ogasawara, M., Takizawa, Y., Kurumizaka, H.
PDB entry 8jng: Methanesulfonate monooxygenase ferredoxin subunit of PBS-PSII-PSI-LHCs from Porphyridium purpureum.
Classification: PHOTOSYNTHESIS
Source organism: Porphyridium purpureum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-06
Authors: You, X., Zhang, X., Cheng, J., Xiao, Y.N., Sun, S., Sui, S.F.
PDB entry 8jni: Structure of AE2 in complex with PIP2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-06
Authors: Yin, Y.X., Ding, D.
PDB entry 8jnj: Structure of R932A/K1147A/H1148A mutant AE2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-06-06
Authors: Yin, Y.X., Ding, D.
PDB entry 8jnk: Crystal structure of human ALKBH3 bound to ssDNA through active site crosslink
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-06-06
Authors: Zhang, L.
PDB entry 8jnl: Psb34 from red algal Porphyridium purpureum.
Classification: PHOTOSYNTHESIS
Source organism: Porphyridium purpureum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-06
Authors: You, X., Zhang, X., Cheng, J., Xiao, Y.N., Sun, S., Sui, S.F.
PDB entry 8jnm: PsbW from red algal Porphyridium purpureum.
Classification: PHOTOSYNTHESIS
Source organism: Porphyridium purpureum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-06
Authors: You, X., Zhang, X., Cheng, J., Xiao, Y.N., Sun, S., Sui, S.F.
PDB entry 8jnn: linker protein LPP1 from red algal Porphyridium purpureum.
Classification: PHOTOSYNTHESIS
Source organism: Porphyridium purpureum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2023-06-06
Authors: You, X., Zhang, X., Cheng, J., Xiao, Y.N., Sun, S., Sui, S.F.
PDB entry 8jno: Crystal structure of cytochrome P450 IkaD from Streptomyces sp. ZJ306, in complex with the substrate 10-epi-deOH-HSAF
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. ZJ306
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-06
Authors: Zhang, Y.L., Zhang, L.P., Zhang, C.S.
PDB entry 8jnp: Crystal structure of cytochrome P450 CftA from Streptomyces torulosus NRRL B-3889, in complex with the substrate ikarugamycin
Classification: OXIDOREDUCTASE
Source organism: Streptomyces torulosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-06
Authors: Jiang, P., Zhang, L.P., Zhang, C.S.
PDB entry 8jnq: Crystal structure of cytochrome P450 CftA from Streptomyces torulosus NRRL B-3889, in complex with a substrate compound c
Classification: OXIDOREDUCTASE
Source organism: Streptomyces torulosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-06
Authors: Jiang, P., Zhang, L.P., Zhang, C.S.
PDB entry 8jnr: Crystal structure of human ALKBH3 bound to 3mC containing ssDNA through distal crosslink
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.66 Å
Deposited: 2023-06-06
Authors: Zhang, L.
PDB entry 8jns: cryo-EM structure of a CED-4 hexamer
Classification: APOPTOSIS
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2023-06-06
Authors: Li, Y., Shi, Y.
PDB entry 8jnt: RxLR effector RxLR19 from Phytophthora capsici
Classification: UNKNOWN FUNCTION
Source organism: Phytophthora capsici
Experimental method: X-RAY DIFFRACTION
Resolution: 2.201 Å
Deposited: 2023-06-06
Authors: Sheng, H., Zhang, X.G.
PDB entry 8jnu: Crystal structure of V30G mutated human transthyretin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-06-06
Authors: Mizuguchi, M., Yamada, S., Obita, T.
PDB entry 8jnx: alkaline amylase Amy703 with truncated of N-terminus domain
Classification: HYDROLASE
Source organism: Alkalihalophilus pseudofirmus OF4
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2028 Å
Deposited: 2023-06-06
Authors: Xiang, L., Zhang, G., Zhou, J.
PDB entry 8jny: Mutated human ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to a pyrazolopyrimidine carboxamide inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-06-06
Authors: Wang, X.Y., Wang, C.Y., Zhou, J., Xu, B.L.
PDB entry 8jnz: Human ADP-ribosyltransferase 1 (PARP1) catalytic domain bound to a pyrazolopyrimidine carboxamide inhibitor
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.84 Å
Deposited: 2023-06-06
Authors: Wang, X.Y., Wang, C.Y., Zhou, J., Xu, B.L.
PDB entry 8jo0: The Cryo-EM structure of a heptameric CED-4/CED-3 catalytic complex
Classification: APOPTOSIS
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-06-06
Authors: Li, Y., Shi, Y.
PDB entry 8jo2: Structural basis of transcriptional activation by the OmpR/PhoB-family response regulator PmrA
Classification: TRANSCRIPTION
Source organism: Escherichia coli BL21(DE3); Klebsiella pneumoniae JM45; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2023-06-06
Authors: Lou, Y.-C., Huang, H.-Y., Chen, C., Wu, K.-P.
PDB entry 8jo3: Cryo-EM structure of a Legionella effector complexed with actin and AMP
Classification: TOXIN
Source organism: Legionella sainthelensi; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2023-06-07
Authors: Zhou, X.T., Wang, X.F., Tan, J.X., Zhu, Y.Q.
PDB entry 8jo4: Cryo-EM structure of a Legionella effector complexed with actin and ATP
Classification: TOXIN
Source organism: Legionella sainthelensi; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-06-07
Authors: Zhou, X.T., Wang, X.F., Tan, J.X., Zhu, Y.Q.
PDB entry 8jof: solution-structure of Ras Binding Domain (RBD) in C-RAF
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-06-07
Authors: Makino, Y., Matsumoto, S., Yoshikawa, Y., Kawamura, T., Kumasaka, T., Shima, F.
PDB entry 8jog: solution structure of Ras Binding Domein (RBD) in C-RAF with negative allosteric modulator.
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2023-06-07
Authors: Makino, Y., Matsumoto, S., Yoshikawa, Y., Kawamura, T., Kumasaka, T., Shima, F.
PDB entry 8joi: Crystal Structure of Bel-1 E166A Mutant.
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2023-06-07
Authors: Dhankhar, K., Hazra, S.
PDB entry 8joj: Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 9,11-epoxy-17-hydroxypregn-4-ene-3,20-dione actate
Classification: OXIDOREDUCTASE
Source organism: Rhodococcus erythropolis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.819 Å
Deposited: 2023-06-07
Authors: Hu, Y.L., Li, X., Cheng, X.Y., Song, S.K., Su, Z.D.
PDB entry 8jok: Crystal structure of V30L mutated human transthyretin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-06-07
Authors: Mizuguchi, M., Yamada, S., Obita, T.
PDB entry 8jol: cryo-EM structure of the CED-4/CED-3 holoenzyme
Classification: APOPTOSIS
Source organism: Caenorhabditis elegans
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2023-06-07
Authors: Li, Y., Tian, L., Zhang, Y., Shi, Y.
PDB entry 8jon: Structure of a synthetic circadian clock protein KaiC mutant of cyanobacteria Synechococcus elongatus PCC 7942
Classification: BIOSYNTHETIC PROTEIN
Source organism: Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Deposited: 2023-06-07
Authors: Jia, X., Zhang, Q., Li, S., Guo, J.
PDB entry 8joo: Crystal structure of cytochrome P450 IkaD from Streptomyces sp. ZJ306, in complex with the substrate ikarugamycin
Classification: OXIDOREDUCTASE
Source organism: Streptomyces sp. ZJ306
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2023-06-08
Authors: Zhang, Y.L., Zhang, L.P., Zhang, C.S.
PDB entry 8jop: Crystal structure of the SARS-CoV-2 main protease in complex with 11a
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-06-08
Authors: Zeng, R., Liu, Y.Z., Wang, F.L., Yang, S.Y., Lei, J.
PDB entry 8joq: Plk1 polo-box domain bound to HPV18 L2 residues 209-215 with pThr213
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.796 Å
Deposited: 2023-06-08
Authors: Ku, B., Jung, S.
PDB entry 8jor: Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type A crystal
Classification: TRANSFERASE
Source organism: Pseudozyma tsukubaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-06-08
Authors: Nakamichi, Y., Saika, A., Watanabe, M., Fujii, T., Morita, T.
PDB entry 8jos: Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type B crystal
Classification: TRANSFERASE
Source organism: Pseudozyma tsukubaensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-06-08
Authors: Nakamichi, Y., Saika, A., Watanabe, M., Fujii, T., Morita, T.
PDB entry 8jot: Crystal structure of CSF-1R kinase domain with sulfatinib
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2023-06-08
Authors: Lin, Q.M., Chen, X.J., Chen, Y.H.
PDB entry 8jou: Fiber I and fiber-tail-adaptor of phage GP4
Classification: VIRAL PROTEIN
Source organism: Ralstonia phage GP4
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-06-08
Authors: Liu, H., Chen, W.
PDB entry 8jov: Portal-tail complex of phage GP4
Classification: VIRAL PROTEIN
Source organism: Ralstonia phage GP4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2023-06-08
Authors: Liu, H., Chen, W.
PDB entry 8jow: Crystal structure of rabbit antibody with phosphorylated peptide bound
Classification: IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2023-06-08
Authors: Caaveiro, J.M.M., Kawade, R., Tsumoto, K.
PDB entry 8joy: Plk1 polo-box domain bound to HPV4 L2 residues 251-257 with pThr255
Classification: CELL CYCLE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2023-06-09
Authors: Ku, B., Jung, S.
PDB entry 8joz: Crystal structure of CmoM from E. coli complexed with sinefungin and cellularly expressed tRNA Ser
Classification: TRANSFERASE/RNA
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2023-06-09
Authors: Yoo, J., Kim, J.
PDB entry 8jp0: structure of human sodium-calciumexchanger NCX1
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-09
Authors: Dong, Y., Zhao, Y.
PDB entry 8jp1: Crystal structure of AKR1C3 in complex with DFV
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-10
Authors: Zheng, X.H., Liu, H., Yao, Z.Q., Zhang, L.P.
PDB entry 8jp2: Crystal structure of AKR1C1 in complex with DFV
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-06-10
Authors: Zheng, X.H., Liu, H., Yao, Z.Q., Zhang, L.P.
PDB entry 8jp3: FCP trimer in diatom Thalassiosira pseudonana
Classification: PHOTOSYNTHESIS
Source organism: Thalassiosira pseudonana CCMP1335
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2023-06-10
Authors: Feng, Y., Li, Z., Zhou, C.C., Liu, C., Shen, J.R., Wang, W.
PDB entry 8jp4: Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (form A)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2023-06-10
Authors: Watanabe, S., Inaba, K.
PDB entry 8jp5: Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (form B)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-06-10
Authors: Watanabe, S., Inaba, K.
PDB entry 8jp6: Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (Substate A)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2023-06-10
Authors: Watanabe, S., Inaba, K.
PDB entry 8jp7: Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate B)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2023-06-10
Authors: Watanabe, S., Inaba, K.
PDB entry 8jp8: Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate C)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2023-06-10
Authors: Watanabe, S., Inaba, K.
PDB entry 8jp9: Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate D)
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.37 Å
Deposited: 2023-06-10
Authors: Watanabe, S., Inaba, K.
PDB entry 8jpa: De novo design cavitated protein without predefined topology
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-06-11
Authors: Hu, X., Xu, Y.
PDB entry 8jpb: cryo-EM structure of NTSR1-GRK2-Galpha(q) complexes 1
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-06-11
Authors: Duan, J., Liu, H., Zhao, F., Yuan, Q., Ji, Y., Xu, H.E.
PDB entry 8jpc: cryo-EM structure of NTSR1-GRK2-Galpha(q) complexes 2
Classification: SIGNALING PROTEIN
Source organism: Bos taurus; Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2023-06-11
Authors: Duan, J., Liu, H., Zhao, F., Yuan, Q., Ji, Y., Xu, H.E.
PDB entry 8jpd: Focused refinement structure of GRK2 in NTSR1-GRK2-Galpha(q) complexes
Classification: SIGNALING PROTEIN
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2023-06-11
Authors: Duan, J., Liu, H., Zhao, F., Yuan, Q., Ji, Y., Xu, H.E.
PDB entry 8jpe: Focused refinement structure of Galpha(q) in NTSR1-GRK2-Galpha(q) complexes
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Deposited: 2023-06-11
Authors: Duan, J., Liu, H., Zhao, F., Yuan, Q., Ji, Y., Xu, H.E.
PDB entry 8jpf: Focused refiment structure of NTSR1 in NTSR1-GRK2-Galpha(q) complexes
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-06-11
Authors: Duan, J., Liu, H., Zhao, F., Yuan, Q., Ji, Y., Xu, H.E.
PDB entry 8jpg: Cryo-EM structure of full-length ERGIC-53 with MCFD2
Classification: PROTEIN TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.76 Å
Deposited: 2023-06-12
Authors: Watanabe, S., Inaba, K.
PDB entry 8jpj: Cryo-EM structure of ClC-6 apo state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-12
Authors: Zhang, S.S.
PDB entry 8jpn: Cryo-EM structure of succinate receptor bound to cis-epoxysuccinic acid coupling to Gi
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Oplophorus gracilirostris
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-12
Authors: Wang, T.X., Tang, W.Q., Li, F.H., Wang, J.Y.
PDB entry 8jpo: Cryo-EM structure of ATP bound human ClC-6
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-06-12
Authors: Zhang, S.S.
PDB entry 8jpp: Cryo-EM structure of succinate receptor bound to succinate acid coupling MiniGsq
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens; Oplophorus gracilirostris
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-12
Authors: Wang, T.X., Tang, W.Q., Li, F.H., Wang, J.Y.
PDB entry 8jpq: SARS-CoV-2 Mpro in complex with D-5-96
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-06-12
Authors: Liu, M., Huang, H.