LiteFold/PDB huggingface dataset:
PDB entry 7kfh: Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-437
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Ebola virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-10-13
Authors: Murin, C.D., Ward, A.B.
PDB entry 7kfi: SARS-CoV-2 Main protease immature form - apo structure
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-14
Authors: Noske, G.D., Nakamura, A.M., Gawriljuk, V.O., Lima, G.M.A., Zeri, A.C.M., Nascimento, A.F.Z., Oliva, G., Godoy, A.S.
PDB entry 7kfk: Crystal structure of LILRB1 D3D4 domain in complex with Plasmodium RIFIN (PF3D7_1373400) V2 domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum (isolate 3D7)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2020-10-14
Authors: Xu, K., Kwong, P.D.
PDB entry 7kfl: Crystal structure of the cargo-binding domain from the plant class XI myosin (MyoXIk)
Classification: MOTOR PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-10-14
Authors: Turowski, V.R., Ruiz, D.M., Nascimento, A.F.Z., Millan, C., Sammito, M.D., Juanhuix, J., Cremonesi, A.S., Uson, I., Giuseppe, P.O., Murakami, M.T.
PDB entry 7kfm: Room temperature oxyferrous Dehaloperoxidase B
Classification: METAL BINDING PROTEIN
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-10-14
Authors: Carey, L.M., Ghiladi, R.A.
PDB entry 7kfn: Structure of Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA containing a 2'-deoxy Benner's Base Z opposite the edited base
Classification: RNA BINDING PROTEIN/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-10-14
Authors: Wilcox, X.E., Fisher, A.J., Beal, P.A.
PDB entry 7kfo: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Indole 3 acetic acid
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-10-14
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kfp: Structure of human PARG complexed with PARG-119
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-10-14
Authors: Brosey, C.A., Bommagani, S., Warden, L.S., Jones, D.E., Ahmed, Z., Tainer, J.A.
PDB entry 7kfq: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to 1H-Indole-3-Carboxylic Acid
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-10-14
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kfr: Adeno-Associated Virus (AAV-DJ) - cryo-EM structure at 1.56 Angstrom Resolution
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.56 Å
Deposited: 2020-10-14
Authors: Xie, Q., Yoshioka, C.K., Chapman, M.S.
PDB entry 7kfs: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Benzoic Acid
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-10-14
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kft: Partial Cas6-RT-Cas1--Cas2 complex
Classification: HYDROLASE
Source organism: Thiomicrospira sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-10-14
Authors: Hoel, C.M., Wang, J.Y., Doudna, J.A., Brohawn, S.G.
PDB entry 7kfu: Cas6-RT-Cas1--Cas2 complex
Classification: HYDROLASE
Source organism: Thiomicrospira sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-10-14
Authors: Hoel, C.M., Wang, J.Y., Doudna, J.A., Brohawn, S.G.
PDB entry 7kfv: Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B12 Fab)
Classification: IMMUNE SYSTEM/Viral protein
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.102 Å
Deposited: 2020-10-15
Authors: Pan, J., Abraham, J., Clark, L., Clark, S.
PDB entry 7kfw: Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B3 Fab)
Classification: IMMUNE SYSTEM/Viral protein
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.792 Å
Deposited: 2020-10-15
Authors: Pan, J., Abraham, J., Clark, L., Clark, S.
PDB entry 7kfx: Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-C2 Fab)
Classification: IMMUNE SYSTEM/Viral protein
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.226 Å
Deposited: 2020-10-15
Authors: Pan, J., Abraham, J., Clark, L., Clark, S.
PDB entry 7kfy: Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-F10 Fab)
Classification: IMMUNE SYSTEM/Viral protein
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.157 Å
Deposited: 2020-10-15
Authors: Pan, J., Abraham, J., Clark, L., Clark, S.
PDB entry 7kfz: Structure of a ternary KRas(G13D)-SOS complex
Classification: HYDROLASE/SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2020-10-15
Authors: Liu, C., Moghadamchargari, Z., Laganowsky, A., Zhao, M.
PDB entry 7kg0: Structure of human PARG complexed with PARG-131
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2020-10-15
Authors: Arvai, A., Bommagani, S., Brosey, C.A., Jones, D.E., Warden, L.S., Ahmed, Z., Tainer, J.A.
PDB entry 7kg1: Structure of human PARG complexed with PARG-002
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2020-10-15
Authors: Brosey, C.A., Balapiti-Modarage, L.P.F., Warden, L.S., Jones, D.E., Ahmed, Z., Tainer, J.A.
PDB entry 7kg2: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59K mutant with pyruvate bound in the active site and L-histidine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2020-10-15
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7kg3: Crystal structure of CoV-2 Nsp3 Macrodomain
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-10-15
Authors: Arvai, A., Brosey, C.A., Link, T., Jones, D.E., Ahmed, Z., Tainer, J.A.
PDB entry 7kg4: Recombinant Beta-2-Glycoprotein I antibody recognition loop mutant
Classification: BLOOD CLOTTING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2020-10-15
Authors: Klenotic, P.A., Yu, E.W.
PDB entry 7kg5: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56W mutant with pyruvate bound in the active site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-10-15
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7kg6: Structure of human PARG complexed with PARG-322
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2020-10-16
Authors: Brosey, C.A., Balapiti-Modarage, L.P.F., Warden, L.S., Jones, D.E., Ahmed, Z., Tainer, J.A.
PDB entry 7kg7: Structure of human PARG complexed with PARG-292
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-10-16
Authors: Brosey, C.A., Balapiti-Modarage, L.P.F., Warden, L.S., Jones, D.E., Ahmed, Z., Tainer, J.A.
PDB entry 7kg8: Structure of human PARG complexed with PARG-061
Classification: HYDROLASE/HYDROLASE inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2020-10-16
Authors: Brosey, C.A., Balapiti-Modarage, L.P.F., Warden, L.S., Jones, D.E., Ahmed, Z., Tainer, J.A.
PDB entry 7kg9: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56W mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2020-10-16
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7kga: Crystal structure of a mosquito-borne flavivirus dumbbell RNA
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-10-16
Authors: Akiyama, B.M., Graham, M.E., O'Donoghue, Z., Beckham, J.D., Kieft, J.S.
PDB entry 7kgb: CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2020-10-16
Authors: Cui, Z., Zhang, J.
PDB entry 7kgc: Crystal structure of a perchloric acid-soluble protein (PSP) from Trichomonas vaginalis at 1.95 A
Classification: HYDROLASE
Source organism: Trichomonas vaginalis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-10-16
Authors: Diaz-Vilchis, A., Rudino-Pinera, E., Alvarez-Sanchez, M.E., Arreola, R.
PDB entry 7kgd: Cryo-EM Structures of AdeB from Acinetobacter baumannii: AdeB-I
Classification: TRANSPORT PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2020-10-16
Authors: Morgan, C.E., Yu, E.W.
PDB entry 7kge: Cryo-EM Structures of AdeB from Acinetobacter baumannii: AdeB-II
Classification: TRANSPORT PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2020-10-16
Authors: Morgan, C.E., Yu, E.W.
PDB entry 7kgf: Cryo-EM Structures of AdeB from Acinetobacter baumannii: AdeB-III
Classification: TRANSPORT PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2020-10-16
Authors: Morgan, C.E., Yu, E.W.
PDB entry 7kgg: Cryo-EM Structures of AdeB from Acinetobacter baumannii: AdeB-ET-I
Classification: TRANSPORT PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2020-10-16
Authors: Morgan, C.E., Yu, E.W.
PDB entry 7kgh: Cryo-EM Structures of AdeB from Acinetobacter baumannii: AdeB-ET-II
Classification: TRANSPORT PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2020-10-16
Authors: Morgan, C.E., Yu, E.W.
PDB entry 7kgi: Cryo-EM Structures of AdeB from Acinetobacter baumannii: AdeB-ET-III
Classification: TRANSPORT PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2020-10-16
Authors: Morgan, C.E., Yu, E.W.
PDB entry 7kgj: Crystal structure of synthetic nanobody (Sb45) complexes with SARS-CoV-2 receptor binding domain
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-16
Authors: Jiang, J., Ahmad, J., Natarajan, K., Boyd, L.F., Margulies, D.H.
PDB entry 7kgk: Crystal structure of synthetic nanobody (Sb16) complexes with SARS-CoV-2 receptor binding domain
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-10-16
Authors: Jiang, J., Ahmad, J., Natarajan, K., Boyd, L.F., Margulies, D.H.
PDB entry 7kgm: C. rodentium YcbB - ertapenem complex
Classification: TRANSFERASE
Source organism: Citrobacter rodentium (strain ICC168)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-10-17
Authors: Caveney, N.A., Strynadka, N.C.J.
PDB entry 7kgn: S. Typhi YcbB - ertapenem complex
Classification: TRANSFERASE
Source organism: Salmonella enterica
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2020-10-18
Authors: Caveney, N.A., Strynadka, N.C.J.
PDB entry 7kgo: Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N351-359
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-10-18
Authors: Szeto, C., Chatzileontiadou, D.S.M., Riboldi-Tunnicliffe, A., Gras, S.
PDB entry 7kgp: Crystal Structure of HLA-A*0201 in complex with SARS-CoV-2 N316-324
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.396 Å
Deposited: 2020-10-18
Authors: Szeto, C., Chatzileontiadou, D.S.M., Riboldi-Tunnicliffe, A., Gras, S.
PDB entry 7kgq: Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N222-230
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.34 Å
Deposited: 2020-10-18
Authors: Szeto, C., Chatzileontiadou, D.S.M., Riboldi-Tunnicliffe, A., Gras, S.
PDB entry 7kgr: Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N159-167
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-10-18
Authors: Szeto, C., Chatzileontiadou, D.S.M., Riboldi-Tunnicliffe, A., Gras, S.
PDB entry 7kgs: Crystal Structure of HLA-A*0201 in complex with SARS-CoV-2 N138-146
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.58 Å
Deposited: 2020-10-18
Authors: Szeto, C., Chatzileontiadou, D.S.M., Riboldi-Tunnicliffe, A., Gras, S.
PDB entry 7kgt: Crystal Structure of HLA-A*0201 in complex with SARS-CoV-2 N226-234
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-10-18
Authors: Szeto, C., Chatzileontiadou, D.S.M., Riboldi-Tunnicliffe, A., Gras, S.
PDB entry 7kgu: Structure of 2Q1-Fab, an antibody selective for IDH2R140Q-HLA-B*07:02
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-18
Authors: Miller, M.S., Aytenfisu, T.Y., Wright, K.M., Gabelli, S.B.
PDB entry 7kgv: Crystal structure of sodium-coupled neutral amino acid transporter SLC38A9 in the N-terminal plugged form
Classification: TRANSPORT PROTEIN
Source organism: Danio rerio; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å
Deposited: 2020-10-19
Authors: Lei, H., Mu, X., Hattne, J., Gonen, T.
PDB entry 7kgw: Structure of PQS Response Protein PqsE in Complex N-(3-(1H-pyrazol-5-yl)phenyl)-1H-indazole-7-carboxamide
Classification: HYDROLASE/Inhibitor
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2020-10-19
Authors: Jeffrey, P.D., Taylor, I.R., Bassler, B.L.
PDB entry 7kgx: Structure of PQS Response Protein PqsE in Complex with 4-(3-(2-methyl-2-morpholinobutyl)ureido)-N-(thiazol-2-yl)benzamide
Classification: HYDROLASE/Inhibitor
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-19
Authors: Jeffrey, P.D., Taylor, I.R., Bassler, B.L.
PDB entry 7kgy: Beta-glucuronidase from Faecalibacterium prausnitzii bound to the inhibitor UNC10201652-glucuronide
Classification: HYDROLASE/INHIBITOR
Source organism: Faecalibacterium prausnitzii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-19
Authors: Simpson, J.B., Redinbo, M.R.
PDB entry 7kgz: FMN-binding beta-glucuronidase from Roseburia hominis
Classification: HYDROLASE
Source organism: Roseburia hominis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-19
Authors: Walker, M.E., Redinbo, M.R.
PDB entry 7kh0: Cryo-EM structure of the human arginine vasopressin AVP-vasopressin receptor V2R-Gs signaling complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-10-19
Authors: Wang, L., Xu, J., Gao, S., Sun, D., Liu, H., Liu, Z., Du, Y., Zhang, C.
PDB entry 7kh1: Baseplate Complex for Myoviridae Phage XM1
Classification: VIRUS
Source organism: Vibrio phage XM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-19
Authors: Wang, Z., Klose, T., Jiang, W., Kuhn, R.J.
PDB entry 7kh2: Structure of N-citrylornithine decarboxylase bound with PLP
Classification: BIOSYNTHETIC PROTEIN, LYASE
Source organism: Francisella novicida
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2020-10-19
Authors: Deng, X., Tomchick, D., Phillips, M., Michael, A.
PDB entry 7kh3: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Indole 3 propionic acid
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-10-19
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kh4: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56W mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site
Classification: LYASE
Source organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-10-19
Authors: Saran, S., Majdi Yazdi, M., Sanders, D.A.R.
PDB entry 7kh5: Hen Egg White Lysozyme in complex with tetrabromoterephthalic acid
Classification: ANTIMICROBIAL PROTEIN,HYDROLASE
Source organism: Gallus gallus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.295 Å
Deposited: 2020-10-20
Authors: Truong, J., Nguyen, S.
PDB entry 7kh6: 1.45 Angstrom resolution internal aldimine crystal structure of the beta-Q114A mutant of TryptophanSynthase in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site
Classification: LYASE/LYASE INHIBITOR
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-10-20
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7kh7: Crystal structure of Staphylococcus aureus ketol-acid reductoisomerase in complex with Mg2+, NADPH, and NSC116565
Classification: ISOMERASE/Inhibitor
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.63 Å
Deposited: 2020-10-20
Authors: Kurz, J.L., Patel, K.P., Guddat, L.W.
PDB entry 7kh8: Human LMPTP in complex with inhibitor
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-10-20
Authors: Stanford, S.M., Diaz, M.A., Ardecky, R.J., Zou, J., Roosild, T., Holmes, Z.J., Hedrick, M.P., Rodiles, S., Santelli, E., Chung, T.D.Y., Jackson, M.R., Bottini, N., Pinkerton, A.B.
PDB entry 7kh9: Crystal structure of OXA-48 K73A in complex with imipenem
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2020-10-20
Authors: Palzkill, T., Hu, L., Sankaran, B., Prasad, B.V.V.
PDB entry 7kha: Cryo-EM Structure of the Desulfovibrio vulgaris Type I-C Apo Cascade
Classification: RNA BINDING PROTEIN/RNA
Source organism: Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303); Desulfovibrio vulgaris str. Hildenborough
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2020-10-20
Authors: O'Brien, R., Wrapp, D., Bravo, J.P.K., Schwartz, E., Taylor, D.
PDB entry 7khb: Escherichia coli RNA polymerase and rrnBP1 promoter open complex
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å
Deposited: 2020-10-20
Authors: Shin, Y., Qayyum, M.Z., Murakami, K.S.
PDB entry 7khc: Escherichia coli RNA polymerase and rrnBP1 promoter closed complex
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.14 Å
Deposited: 2020-10-20
Authors: Shin, Y., Qayyum, M.Z., Murakami, K.S.
PDB entry 7khd: Human GITR-GITRL complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9561 Å
Deposited: 2020-10-21
Authors: Wang, F., Chau, B., West, S.M., Strop, P.
PDB entry 7khe: Escherichia coli RNA polymerase and rrnBP1 promoter pre-open complex with DksA/ppGpp
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2020-10-21
Authors: Shin, Y., Qayyum, M.Z., Murakami, K.S.
PDB entry 7khf: CryoEM structure of LILRB1 D3D4 domain-inserted antibody MDB1 Fab in complex with Plasmodium RIFIN (PF3D7_1373400) V2 domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum (isolate 3D7)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Deposited: 2020-10-21
Authors: Xu, K., Kwong, P.D.
PDB entry 7khg: Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX3397
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-10-21
Authors: Zhang, Y.
PDB entry 7khh: Ternary complex of VHL/BRD4-BD1/Compound9 (4-(3,5-difluoropyridin-2-yl)-N-(11-(((S)-1-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-1-yl)-3,3-dimethyl-1-oxobutan-2-yl)amino)-11-oxoundecyl)-10-methyl-7-((methylsulfonyl)methyl)-11-oxo-3,4,10,11-tetrahydro-1H-1,4,10-triazadibenzo[cd,f]azulene-6-carboxamide)
Classification: PEPTIDE BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.281 Å
Deposited: 2020-10-21
Authors: Murray, J.M.
PDB entry 7khi: Escherichia coli RNA polymerase and rrnBP1 promoter complex with DksA/ppGpp
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli (strain K12); Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2020-10-21
Authors: Shin, Y., Qayyum, M.Z., Murakami, K.S.
PDB entry 7khj: Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX8512 in the DFG-in state
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-21
Authors: Zhang, Y.
PDB entry 7khk: Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX9486 (bezuclastinib) in the DFG-in state
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2020-10-21
Authors: Zhang, Y.
PDB entry 7khl: BRD4-BD1 Compound6 (methyl 4-(3,5-difluoropyridin-2-yl)-10-methyl-7-((methylsulfonyl)methyl)-11-oxo-3,4,10,11-tetrahydro-1H-1,4,10-triazadibenzo[cd,f]azulene-6-carboxylate)
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.286 Å
Deposited: 2020-10-21
Authors: Murray, J.M.
PDB entry 7khm: Crystal structure of hDHHS20 bound to palmitoyl CoA
Classification: MEMBRANE PROTEIN,TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.88 Å
Deposited: 2020-10-21
Authors: Lee, C.-J., Banerjee, A.
PDB entry 7khn: NicA2 variant N462Y/W427Y in complex with (S)-nicotine
Classification: FLAVOPROTEIN
Source organism: Pseudomonas putida (strain S16)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2020-10-21
Authors: Tararina, M.A., Allen, K.N.
PDB entry 7kho: NicA2 variant N462V in complex with (S)-nicotine
Classification: FLAVOPROTEIN
Source organism: Pseudomonas putida S16
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2020-10-21
Authors: Tararina, M.A., Allen, K.N.
PDB entry 7khp: Acyl-enzyme intermediate structure of SARS-CoV-2 Mpro in complex with its C-terminal autoprocessing sequence.
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2020-10-21
Authors: Lee, J., Worrall, L.J., Paetzel, M., Strynadka, N.C.J.
PDB entry 7khq: Crystal structure of OXA-48 K73A in complex with meropenem
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-21
Authors: Palzkill, T., Hu, L., Sankaran, B., Prasad, B.V.V.
PDB entry 7khr: Cryo-EM structure of bafilomycin A1-bound intact V-ATPase from bovine brain
Classification: PROTON TRANSPORT
Source organism: Bos taurus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Deposited: 2020-10-21
Authors: Wang, R., Li, X.
PDB entry 7khs: OgOGA IN COMPLEX WITH LIGAND 55
Classification: HYDROLASE/INHIBITOR
Source organism: Oceanicola granulosus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2020-10-21
Authors: Shaffer, P.L.
PDB entry 7kht: The acyl chains of phosphoinositide PIP3 alter the structure and function of nuclear receptor Steroidogenic Factor-1 (SF-1)
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.504 Å
Deposited: 2020-10-22
Authors: Blind, R.D.
PDB entry 7khu: Crystal structure of the carbohydrate-binding domain VP8* of human P[4] rotavirus strain BM5265 in complex with LNDFH I
Classification: VIRAL PROTEIN
Source organism: Human rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2020-10-22
Authors: Xu, S., Stuckert, M., Burnside, R., McGinnis, K., Jiang, X., Kennedy, M.A.
PDB entry 7khv: CpOGA IN COMPLEX WITH LIGAND 54
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridium perfringens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-22
Authors: Shaffer, P.L.
PDB entry 7khw: Cryo-EM structure of enteropathogenic Escherichia coli type III secretion system EspA filament
Classification: PROTEIN FIBRIL
Source organism: Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-10-22
Authors: Zheng, W., Ilangovan, A., Costa, T.R.D., Egelman, E.H.
PDB entry 7khx: Mouse GITR-GITRL complex
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2057 Å
Deposited: 2020-10-22
Authors: Wang, F., Chau, B., West, S.M., Strop, P.
PDB entry 7khy: Crystal structure of OXA-163 K73A in complex with meropenem
Classification: HYDROLASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2020-10-22
Authors: Palzkill, T., Hu, L., Sankaran, B., Prasad, B.V.V.
PDB entry 7khz: Crystal structure of OXA-163 K73A in complex with imipenem
Classification: HYDROLASE
Source organism: Enterobacter cloacae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2020-10-22
Authors: Palzkill, T., Hu, L., Sankaran, B., Prasad, B.V.V.
PDB entry 7ki0: Semaglutide-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in Complex with Gs protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Lama glama; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2020-10-22
Authors: Zhang, X., Belousoff, M.J., Danev, R., Sexton, P.M., Wootten, D.
PDB entry 7ki1: Taspoglutide-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in Complex with Gs Protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2020-10-22
Authors: Zhang, X., Belousoff, M.J., Danev, R., Sexton, P.M., Wootten, D.
PDB entry 7ki3: Human Argonaute2:miR-122 bound to the HCV genotype 1a site-1 RNA
Classification: HYDROLASE/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2020-10-22
Authors: Gebert, L.F.R., MacRae, I.J.
PDB entry 7ki4: Structure of the NiV F glycoprotein in complex with the 12B2 neutralizing antibody
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; Nipah virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2020-10-23
Authors: Dang, H.V., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 7ki5: Crystal structure of P[6] rotavirus vp8* in complex with LNT
Classification: VIRAL PROTEIN
Source organism: Human rotavirus A
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2020-10-23
Authors: Xu, S., Kennedy, M.A.
PDB entry 7ki6: Structure of the HeV F glycoprotein in complex with the 1F5 neutralizing antibody
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Hendra henipavirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-10-23
Authors: Dang, H.V., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
PDB entry 7ki7: The external aldimine crystal structure of the beta-K167T mutant Tryptophan Synthase at 1.75 Angstrom resolution in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site
Classification: LYASE/LYASE INHIBITOR
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-10-23
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7ki8: Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor SDDC-0001580
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Mycobacterium ulcerans (strain Agy99)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2020-10-23
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7ki9: Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor SDDC-0001912
Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Source organism: Mycobacterium ulcerans (strain Agy99)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2020-10-23
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kia: Crystal structure of FGFR2 kinase domain gatekeeper mutant V564F in complex with covalent compound 19
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2020-10-23
Authors: Ke, J., Wibowo, A.S., Carter, J.J., Larsen, N.A.
PDB entry 7kib: PRMT5:MEP50 Complexed with 5,5-Bicyclic Inhibitor Compound 4
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2020-10-23
Authors: Palte, R.L., Hayes, R.P.
PDB entry 7kic: PRMT5:MEP50 Complexed with 5,5-Bicyclic Inhibitor Compound 34
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2020-10-23
Authors: Palte, R.L.
PDB entry 7kid: PRMT5:MEP50 Complexed with 5,5-Bicyclic Inhibitor Compound 72
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-10-23
Authors: Palte, R.L.
PDB entry 7kie: Crystal structure of FGFR2 kinase domain gatekeeper mutant V564F in complex with covalent compound 3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2020-10-23
Authors: Ke, J., Wibowo, A.S., Carter, J.J., Larsen, N.A.
PDB entry 7kif: Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 transcription factor
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2020-10-23
Authors: Lilic, M., Darst, S.A., Campbell, E.A.
PDB entry 7kig: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Indole-3-butyric acid
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-10-23
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kih: Crystal structure of the mouse lipin-1 M-Lip domain
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.467 Å
Deposited: 2020-10-23
Authors: Gu, W., Airola, M.V.
PDB entry 7kii: Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+
Classification: REPLICATION/DNA
Source organism: Muscovy duck circovirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-10-23
Authors: Tompkins, K.J., Gordon, W.R., Shi, K.
PDB entry 7kij: Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site
Classification: REPLICATION/DNA
Source organism: Muscovy duck circovirus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.69 Å
Deposited: 2020-10-23
Authors: Tompkins, K.J., Gordon, W.R., Shi, K.
PDB entry 7kik: Wheat dwarf virus Rep domain circular permutation complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+
Classification: REPLICATION/DNA
Source organism: Wheat dwarf virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2020-10-23
Authors: Tompkins, K.J., Gordon, W.R., Shi, K., Litzau, L.A.
PDB entry 7kil: Crystal structure of the mouse lipin-1 M-Lip domain with zinc
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.898 Å
Deposited: 2020-10-23
Authors: Gu, W., Airola, M.V.
PDB entry 7kim: Mycobacterium tuberculosis WT RNAP transcription closed promoter complex with WhiB7 transcription factor
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2020-10-23
Authors: Lilic, M., Darst, S.A., Campbell, E.A.
PDB entry 7kin: Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 promoter
Classification: TRANSCRIPTION, TRANSFERASE/DNA
Source organism: Mycobacterium tuberculosis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.74 Å
Deposited: 2020-10-23
Authors: Lilic, M., Darst, S.A., Campbell, E.A.
PDB entry 7kio: Crystal structure of inositol polyphosphate 1-phosphatase (INPP1) D54A mutant
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2020-10-24
Authors: Xiong, J.-P., Dollins, D.E., Ren, Y., York, J.D.
PDB entry 7kip: A 3.4 Angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles
Classification: VIRAL PROTEIN
Source organism: Human coronavirus NL63
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2020-10-24
Authors: Zhang, K., Li, S., Pintilie, G., Chmielewski, D., Schmid, M., Simmons, G., Jin, J., Chiu, W.
PDB entry 7kiq: Crystal structure of the mouse lipin-2 M-Lip domain
Classification: LIPID BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.523 Å
Deposited: 2020-10-24
Authors: Yang, J.W., Gu, W., Airola, M.V.
PDB entry 7kir: Crystal structure of inositol polyphosphate 1-phosphatase (INPP1) D54A mutant in complex with inositol (1,4)-bisphosphate
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-10-24
Authors: Dollins, D.E., Xiong, J.-P., Ren, Y., York, J.D.
PDB entry 7kis: Crystal structure of Pseudomonas aeruginosa PBP2 in complex with WCK 5153
Classification: HYDROLASE/Inhibitor/Antibiotic
Source organism: Pseudomonas aeruginosa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.869 Å
Deposited: 2020-10-24
Authors: Rajavel, M., van den Akker, F.
PDB entry 7kit: Crystal structure of Pseudomonas aeruginosa PBP3 in complex with WCK 4234
Classification: HYDROLASE/Inhibitor/Antibiotic
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.089 Å
Deposited: 2020-10-24
Authors: van den Akker, F.
PDB entry 7kiu: Structure of recombinant human DNase1L3 in complex with Mg2+
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2020-10-24
Authors: McCord, J.J., Keyel, P.A., Sutton, R.B.
PDB entry 7kiv: Crystal structure of Pseudomonas aeruginosa PBP3 in complex with avibactam
Classification: HYDROLASE/Inhibitor/Antibiotic
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.389 Å
Deposited: 2020-10-24
Authors: van den Akker, F.
PDB entry 7kiw: Crystal structure of Pseudomonas aeruginosa PBP3 in complex with zidebactam
Classification: HYDROLASE/Inhibitor/Antibiotic
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2020-10-25
Authors: van den Akker, F., Kumar, V.
PDB entry 7kix: The structure of anti-CRISPR AcrIE2
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage JBD16C
Experimental method: SOLUTION NMR
Deposited: 2020-10-25
Authors: Pawluk, A., Davidson, A.R., Maxwell, K.L.
PDB entry 7kiy: Plasmodium falciparum RhopH complex in soluble form
Classification: MEMBRANE PROTEIN
Source organism: Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2020-10-25
Authors: Schureck, M.A., Darling, J.E., Merk, A., Subramaniam, S., Desai, S.A.
PDB entry 7kiz: reduced human peroxiredoxin 2
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-10-25
Authors: Kean, K.M., Karplus, P.A.
PDB entry 7kj0: hyperoxidized human peroxiredoxin 2
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.29 Å
Deposited: 2020-10-25
Authors: Kean, K.M., Karplus, P.A.
PDB entry 7kj1: human peroxiredoxin 2 - C172S mutant
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-10-25
Authors: Kean, K.M., Karplus, P.A.
PDB entry 7kj2: SARS-CoV-2 Spike Glycoprotein with one ACE2 Bound
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-10-25
Authors: Zhang, J., Xiao, T.S., Cai, Y.F., Chen, B.
PDB entry 7kj3: SARS-CoV-2 Spike Glycoprotein with two ACE2 Bound
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2020-10-25
Authors: Zhang, J., Xiao, T.S., Cai, Y.F., Chen, B.
PDB entry 7kj4: SARS-CoV-2 Spike Glycoprotein with three ACE2 Bound
Classification: VIRAL PROTEIN/HYDROLASE
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-10-25
Authors: Zhang, J., Xiao, T.S., Cai, Y.F., Chen, B.
PDB entry 7kj5: SARS-CoV-2 Spike Glycoprotein, prefusion with one RBD up conformation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-10-25
Authors: Zhang, J., Xiao, T.S., Cai, Y.F., Chen, B.
PDB entry 7kj6: Structure of Legionella Effector LegA15
Classification: CELL INVASION
Source organism: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2020-10-26
Authors: Cygler, M., Chung, I.Y.W.
PDB entry 7kj7: Plasmodium falciparum protein Pf12p
Classification: UNKNOWN FUNCTION
Source organism: Plasmodium falciparum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-26
Authors: Dietrich, M.H., Tham, W.H.
PDB entry 7kj8: Wild-type epi-isozizaene synthase: complex with 3 Mg2+ and pamidronate
Classification: LYASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-10-26
Authors: Ronnebaum, T.A., Gardner, S.M., Christianson, D.W.
PDB entry 7kj9: Wild-type epi-isozizaene synthase: complex with 3 Mg2+ and risedronate
Classification: LYASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-26
Authors: Ronnebaum, T.A., Gardner, S.M., Christianson, D.W.
PDB entry 7kja: Crystal structure of the EphA2 intracellular KD-SAM domains
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-10-26
Authors: Lechtenberg, B.C., Pasquale, E.B.
PDB entry 7kjb: Crystal structure of the EphA2 S897E/S901E mutant intracellular KD-SAM domains
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-26
Authors: Lechtenberg, B.C., Pasquale, E.B.
PDB entry 7kjc: Crystal structure of the EphA2 S901E mutant intracellular KD-SAM domains
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-26
Authors: Lechtenberg, B.C., Pasquale, E.B.
PDB entry 7kjd: F96M epi-isozizaene synthase: complex with 3 Mg2+ and risedronate
Classification: LYASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-10-26
Authors: Ronnebaum, T.A., Gardner, S.M., Christianson, D.W.
PDB entry 7kje: F96S epi-isozizaene synthase: complex with 3 Mg2+ and neridronate
Classification: LYASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-26
Authors: Ronnebaum, T.A., Gardner, S., Christianson, D.W.
PDB entry 7kjf: Wild-type epi-isozizaene synthase: complex with 3 Mg2+ and neridronate
Classification: LYASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-10-26
Authors: Ronnebaum, T.A., Gardner, S.M., Christianson, D.W.
PDB entry 7kjg: F96M epi-isozizaene synthase: complex with 3 Mg2+ and BTAC
Classification: LYASE
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3 Å
Deposited: 2020-10-26
Authors: Ronnebaum, T.A., Gardner, S.M., Christianson, D.W.
PDB entry 7kjh: Plasmodium falciparum protein Pf12p bound to nanobody B9
Classification: UNKNOWN FUNCTION
Source organism: Plasmodium falciparum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-26
Authors: Dietrich, M.H., Tham, W.H.
PDB entry 7kji: Plasmodium falciparum protein Pf12p bound to nanobody D9
Classification: UNKNOWN FUNCTION
Source organism: Plasmodium falciparum; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2020-10-26
Authors: Dietrich, M.H., Tham, W.H.
PDB entry 7kjj: Reconstructed ancestor of HIUases and Transthyretins
Classification: TRANSPORT PROTEIN
Source organism: unidentified
Experimental method: X-RAY DIFFRACTION
Resolution: 1.55 Å
Deposited: 2020-10-26
Authors: Nagem, R.A.P., Bleicher, L., Costa, M.A.F.
PDB entry 7kjk: The Neck region of Phage XM1 (6-fold symmetry)
Classification: VIRAL PROTEIN
Source organism: Vibrio phage XM1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-10-26
Authors: Wang, Z., Klose, T., Jiang, W., Kuhn, R.J.
PDB entry 7kjl: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Salicylic acid
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-26
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kjm: CRYSTAL STRUCTURE OF HUMAN MDM2 IN COMPLEX WITH D-PEPTIDE INHIBITOR (DPMI-OMEGA)
Classification: LIGASE/LIGASE INHIBITOR
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2020-10-26
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 7kjn: CRYSTAL STRUCTURE OF HUMAN MDMX IN COMPLEX WITH D-PEPTIDE INHIBITOR (DPMI-OMEGA)
Classification: LIGASE/LIGASE INHIBITOR
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-26
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 7kjo: crystal structure of PLEKHA7 PH domain biding SO4
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2020-10-26
Authors: Marassi, F.M., Aleshin, A.E., Liddington, R.C.
PDB entry 7kjp: Disulfide Stabilized Norovirus GI.1 VLP Shell Region
Classification: VIRUS LIKE PARTICLE
Source organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2020-10-26
Authors: Gorman, J., Kwong, P.D.
PDB entry 7kjq: Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Picloram
Classification: DNA BINDING PROTEIN
Source organism: Variovorax paradoxus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-10-26
Authors: Walton, W.G., Redinbo, M.R., Dangl, J.L.
PDB entry 7kjr: Cryo-EM structure of SARS-CoV-2 ORF3a
Classification: TRANSPORT PROTEIN, VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2020-10-26
Authors: Kern, D.M., Hoel, C.M., Kotecha, A., Brohawn, S.G.
PDB entry 7kjs: Crystal structure of CDK2/cyclin E in complex with PF-06873600
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.187 Å
Deposited: 2020-10-26
Authors: McTigue, M.A., He, Y., Ferre, R.A.
PDB entry 7kjt: KEOPS tRNA modifying sub-complex of archaeal Cgi121 and tRNA
Classification: RNA BINDING PROTEIN/RNA
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.34 Å
Deposited: 2020-10-26
Authors: Ceccarelli, D.F., Beenstock, J., Mao, D.Y.L., Sicheri, F.
PDB entry 7kju: Cgi121-tRNA complex
Classification: RNA
Source organism: Methanocaldococcus jannaschii
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-10-26
Authors: Ceccarelli, D.F., Beenstock, J., Wan, L.C.K., Sicheri, F.