LiteFold/PDB huggingface dataset:
PDB entry 3j5q: Structure of TRPV1 ion channel in complex with DkTx and RTX determined by single particle electron cryo-microscopy
Classification: TRANSPORT PROTEIN/TOXIN
Source organism: Chilobrachys guangxiensis; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2013-10-28
Authors: Liao, M., Cao, E., Julius, D., Cheng, Y.
PDB entry 3j5r: Reconstruction of TRPV1 ion channel in complex with capsaicin by single particle cryo-microscopy
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2013-10-28
Authors: Liao, M., Cao, E., Julius, D., Cheng, Y.
PDB entry 3j5s: EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics
Classification: RIBOSOME/TRANSLATION
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.5 Å
Deposited: 2013-11-15
Authors: Hashem, Y.
PDB entry 3j5v: PhuZ201 filament
Classification: VIRAL PROTEIN
Source organism: Pseudomonas phage 201phi2-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.1 Å
Deposited: 2013-11-20
Authors: Zehr, E.A.
PDB entry 3j5y: Structure of the mammalian ribosomal pre-termination complex associated with eRF1-eRF3-GDPNP
Classification: TRANSLATION/RNA
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.7 Å
Deposited: 2013-11-21
Authors: des Georges, A., Hashem, Y., Unbehaun, A., Grassucci, R.A., Taylor, D., Hellen, C.U.T., Pestova, T.V., Frank, J.
PDB entry 3j63: Unified assembly mechanism of ASC-dependent inflammasomes
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2013-12-05
Authors: Lu, A., Magupalli, V.G., Ruan, J., Yin, Q., Atianand, M.K., Vos, M., Schroder, G.F., Fitzgerald, K.A., Wu, H., Egelman, E.H.
PDB entry 3j67: Structural mechanism of the dynein powerstroke (post-powerstroke state)
Classification: MOTOR PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 34 Å
Deposited: 2013-12-22
Authors: Lin, J., Okada, K., Raytchev, M., Smith, M.C., Nicastro, D.
PDB entry 3j68: Structural mechanism of the dynein powerstroke (pre-powerstroke state)
Classification: MOTOR PROTEIN
Source organism: Strongylocentrotus purpuratus
Experimental method: ELECTRON MICROSCOPY
Resolution: 30 Å
Deposited: 2013-12-23
Authors: Lin, J., Okada, K., Raytchev, M., Smith, M.C., Nicastro, D.
PDB entry 3j6b: Structure of the yeast mitochondrial large ribosomal subunit
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2014-01-22
Authors: Amunts, A., Brown, A., Bai, X.C., Llacer, J.L., Hussain, T., Emsley, P., Long, F., Murshudov, G., Scheres, S.H.W., Ramakrishnan, V.
PDB entry 3j6c: Cryo-EM structure of MAVS CARD filament
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.6 Å
Deposited: 2014-02-04
Authors: Xu, H., He, X., Zheng, H., Huang, L.J., Hou, F., Yu, Z., de la Cruz, M.J., Borkowski, B., Zhang, X., Chen, Z.J., Jiang, Q.-X.
PDB entry 3j6d: Model of the PrgH-PrgK periplasmic rings
Classification: STRUCTURAL PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.7 Å
Deposited: 2014-02-14
Authors: Bergeron, J.R.C., Strynadka, N.C.J.
PDB entry 3j6e: Energy minimized average structure of Microtubules stabilized by GmpCpp
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2014-02-18
Authors: Alushin, G.M., Lander, G.C., Kellogg, E.H., Zhang, R., Baker, D., Nogales, E.
PDB entry 3j6f: Minimized average structure of GDP-bound dynamic microtubules
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2014-02-19
Authors: Alushin, G.M., Lander, G.C., Kellogg, E.H., Zhang, R., Baker, D., Nogales, E.
PDB entry 3j6g: Minimized average structure of microtubules stabilized by taxol
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å
Deposited: 2014-02-19
Authors: Alushin, G.M., Lander, G.C., Kellogg, E.H., Zhang, R., Baker, D., Nogales, E.
PDB entry 3j6h: Nucleotide-free Kinesin motor domain complexed with GMPCPP-microtubule
Classification: STRUCTURAL PROTEIN/MOTOR PROTEIN
Source organism: Mus musculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.1 Å
Deposited: 2014-02-21
Authors: Morikawa, M., Yajima, H., Nitta, R., Inoue, S., Ogura, T., Sato, C., Hirokawa, N.
PDB entry 3j6j: 3.6 Angstrom resolution MAVS filament generated from helical reconstruction
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.64 Å
Deposited: 2014-03-13
Authors: Wu, B., Peisley, A., Li, Z., Egelman, E., Walz, T., Penczek, P., Hur, S.
PDB entry 3j6k: 2.5A structure of lysozyme solved by MicroED
Classification: HYDROLASE
Source organism: Gallus gallus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 2.5 Å
Deposited: 2014-03-18
Authors: Nannenga, B.L., Shi, D., Leslie, A.G.W., Gonen, T.
PDB entry 3j6l: Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2014-03-19
Authors: Organtini, L.J., Makhov, A.M., Conway, J.F., Hafenstein, S., Carson, S.D.
PDB entry 3j6m: Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2014-03-19
Authors: Organtini, L.J., Makhov, A.M., Conway, J.F., Hafenstein, S., Carson, S.D.
PDB entry 3j6n: Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2014-03-19
Authors: Organtini, L.J., Makhov, A.M., Conway, J.F., Hafenstein, S., Carson, S.D.
PDB entry 3j6o: Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2014-03-19
Authors: Organtini, L.J., Makhov, A.M., Conway, J.F., Hafenstein, S., Carson, S.D.
PDB entry 3j6p: Pseudo-atomic model of dynein microtubule binding domain-tubulin complex based on a cryoEM map
Classification: MOTOR PROTEIN/STRUCTURAL PROTEIN
Source organism: Dictyostelium discoideum; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.2 Å
Deposited: 2014-03-20
Authors: Uchimura, S., Fujii, T., Takazaki, H., Ayukawa, R., Nishikawa, Y., Minoura, I., Hachikubo, Y., Kurisu, G., Sutoh, K., Kon, T., Namba, K., Muto, E.
PDB entry 3j6q: Identification of the active sites in the methyltransferases of a transcribing dsRNA virus
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2014-03-20
Authors: Zhu, B., Yang, C., Liu, H., Cheng, L., Song, F., Zeng, S., Huang, X., Ji, G., Zhu, P.
PDB entry 3j6r: Electron cryo-microscopy of Human Papillomavirus Type 16 capsid
Classification: VIRUS
Source organism: Human papillomavirus type 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.1 Å
Deposited: 2014-03-20
Authors: Cardone, G., Moyer, A.L., Cheng, N., Thompson, C.D., Dvoretzky, I., Lowy, D.R., Schiller, J.T., Steven, A.C., Buck, C.B., Trus, B.L.
PDB entry 3j6s: Cryo-EM structure of Dengue virus serotype 3 at 28 degrees C
Classification: VIRUS
Source organism: Dengue virus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å
Deposited: 2014-03-24
Authors: Fibriansah, G., Tan, J.L., Smith, S.A., de Alwis, R., Ng, T.-S., Kostyuchenko, V.A., Kukkaro, P., de Silva, A.M., Crowe Jr., J.E., Lok, S.-M.
PDB entry 3j6t: Cryo-EM structure of Dengue virus serotype 3 at 37 degrees C
Classification: VIRUS
Source organism: Dengue virus 3
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å
Deposited: 2014-03-25
Authors: Fibriansah, G., Tan, J.L., Smith, S.A., de Alwis, R., Ng, T.-S., Kostyuchenko, V.A., Kukkaro, P., de Silva, A.M., Crowe Jr., J.E., Lok, S.-M.
PDB entry 3j6u: Cryo-EM structure of Dengue virus serotype 3 in complex with human antibody 5J7 Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Dengue virus 3; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2014-03-26
Authors: Fibriansah, G., Tan, J.L., Smith, S.A., de Alwis, R., Ng, T.-S., Kostyuchenko, V.A., Kukkaro, P., de Silva, A.M., Crowe Jr., J.E., Lok, S.-M.
PDB entry 3j6x: S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2014-04-16
Authors: Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.
PDB entry 3j6y: S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
Classification: RIBOSOME
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å
Deposited: 2014-04-16
Authors: Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.
PDB entry 3j70: Model of gp120, including variable regions, in complex with CD4 and 17b
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 20 Å
Deposited: 2014-04-22
Authors: Rasheed, M., Bettadapura, R., Bajaj, C.
PDB entry 3j77: Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Classification: RIBOSOME
Source organism: Escherichia coli; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.2 Å
Deposited: 2014-05-29
Authors: Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A.
PDB entry 3j78: Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
Classification: RIBOSOME
Source organism: Escherichia coli; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å
Deposited: 2014-05-29
Authors: Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A.
PDB entry 3j79: Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Classification: RIBOSOME/INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2014-06-02
Authors: Wong, W., Bai, X.C., Brown, A., Fernandez, I.S., Hanssen, E., Condron, M., Tan, Y.H., Baum, J., Scheres, S.H.W.
PDB entry 3j7a: Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
Classification: RIBOSOME/INHIBITOR
Source organism: Plasmodium falciparum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2014-06-03
Authors: Wong, W., Bai, X.C., Brown, A., Fernandez, I.S., Hanssen, E., Condron, M., Tan, Y.H., Baum, J., Scheres, S.H.W.
PDB entry 3j7b: Catalase solved at 3.2 Angstrom resolution by MicroED
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.2 Å
Deposited: 2014-06-09
Authors: Nannenga, B.L., Shi, D., Hattne, J., Reyes, F.E., Gonen, T.
PDB entry 3j7e: Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.6 Å
Deposited: 2014-06-23
Authors: Lee, H., Brendle, S.A., Bywaters, S.M., Christensen, N.D., Hafenstein, S.
PDB entry 3j7g: Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Classification: VIRUS
Source organism: Human papillomavirus type 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.6 Å
Deposited: 2014-06-24
Authors: Lee, H., Hafenstein, S.
PDB entry 3j7h: Structure of beta-galactosidase at 3.2-A resolution obtained by cryo-electron microscopy
Classification: HYDROLASE
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2014-06-30
Authors: Bartesaghi, A., Matthies, D., Banerjee, S., Merk, A., Subramaniam, S.
PDB entry 3j7i: Structure of alpha- and beta- tubulin in GMPCPP-microtubules
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.9 Å
Deposited: 2014-07-01
Authors: Yajima, H., Ogura, T., Nitta, R., Okada, Y., Sato, C., Hirokawa, N.
PDB entry 3j7l: Full virus map of brome mosaic virus
Classification: VIRUS
Source organism: Brome mosaic virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2014-07-18
Authors: Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
PDB entry 3j7m: Virus model of brome mosaic virus (first half data set)
Classification: VIRUS
Source organism: Brome mosaic virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2014-07-18
Authors: Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
PDB entry 3j7n: Virus model of brome mosaic virus (second half data set)
Classification: VIRUS
Source organism: Brome mosaic virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2014-07-18
Authors: Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
PDB entry 3j7o: Structure of the mammalian 60S ribosomal subunit
Classification: RIBOSOME
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2014-08-01
Authors: Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.
PDB entry 3j7p: Structure of the 80S mammalian ribosome bound to eEF2
Classification: RIBOSOME
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2014-08-01
Authors: Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.
PDB entry 3j7q: Structure of the idle mammalian ribosome-Sec61 complex
Classification: RIBOSOME
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2014-08-01
Authors: Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.
PDB entry 3j7r: Structure of the translating mammalian ribosome-Sec61 complex
Classification: RIBOSOME
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2014-08-01
Authors: Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.
PDB entry 3j7t: Calcium atpase structure with two bound calcium ions determined by electron crystallography of thin 3D crystals
Classification: HYDROLASE
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.4 Å
Deposited: 2014-08-07
Authors: Yonekura, K., Kato, K., Ogasawara, M., Tomita, M., Toyoshima, C.
PDB entry 3j7v: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Classification: VIRUS
Source organism: Enterobacteria phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2014-08-12
Authors: Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.
PDB entry 3j7w: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Classification: VIRUS
Source organism: Enterobacteria phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2014-08-12
Authors: Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.
PDB entry 3j7x: Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Classification: VIRUS
Source organism: Enterobacteria phage T7
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2014-08-12
Authors: Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.
PDB entry 3j7y: Structure of the large ribosomal subunit from human mitochondria
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2014-08-26
Authors: Brown, A., Amunts, A., Bai, X.C., Sugimoto, Y., Edwards, P.C., Murshudov, G., Scheres, S.H.W., Ramakrishnan, V.
PDB entry 3j7z: Structure of the E. coli 50S subunit with ErmCL nascent chain
Classification: RIBOSOME/ANTIBIOTIC
Source organism: Escherichia coli K-12; Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2014-08-27
Authors: Arenz, S., Meydan, S., Starosta, A.L., Berninghausen, O., Beckmann, R., Vazquez-Laslop, N., Wilson, D.N.
PDB entry 3j80: CryoEM structure of 40S-eIF1-eIF1A preinitiation complex
Classification: RIBOSOME
Source organism: Kluyveromyces lactis; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2014-08-28
Authors: Hussain, T., Llacer, J.L., Fernandez, I.S., Savva, C.G., Ramakrishnan, V.
PDB entry 3j81: CryoEM structure of a partial yeast 48S preinitiation complex
Classification: RIBOSOME
Source organism: Kluyveromyces lactis; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2014-08-29
Authors: Hussain, T., Llacer, J.L., Fernandez, I.S., Savva, C.G., Ramakrishnan, V.
PDB entry 3j82: Electron cryo-microscopy of DNGR-1 in complex with F-actin
Classification: MEMBRANE PROTEIN/ADP-BINDING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.7 Å
Deposited: 2014-09-25
Authors: Hanc, P., Fujii, T., Yamada, Y., Huotari, J., Schulz, O., Ahrens, S., Kjaer, S., Way, M., Namba, K., Reis e Sousa, C.
PDB entry 3j83: Heptameric EspB Rosetta model guided by EM density
Classification: PROTEIN BINDING
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: ELECTRON MICROSCOPY
Resolution: 30 Å
Deposited: 2014-09-30
Authors: Solomonson, M., DiMaio, F., Strynadka, N.C.J.
PDB entry 3j89: Structural Plasticity of Helical Nanotubes Based on Coiled-Coil Assemblies
Classification: SYNTHETIC PEPTIDE
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2014-10-07
Authors: Egelman, E.H., Xu, C., DiMaio, F., Magnotti, E., Modlin, C., Yu, X., Wright, E., Baker, D., Conticello, V.P.
PDB entry 3j8a: Structure of the F-actin-tropomyosin complex
Classification: STRUCTURAL PROTEIN/HYDROLASE
Source organism: Mus musculus; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2014-10-08
Authors: von der Ecken, J., Mueller, M., Lehman, W., Manstein, J.M., Penczek, A.P., Raunser, S.
PDB entry 3j8b: Model of the human eIF3 PCI-MPN octamer docked into the 43S-HCV IRES EM map
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.3 Å
Deposited: 2014-10-08
Authors: Erzberger, J.P., Ban, N.
PDB entry 3j8c: Model of the human eIF3 PCI-MPN octamer docked into the 43S EM map
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 11.6 Å
Deposited: 2014-10-08
Authors: Erzberger, J.P., Ban, N.
PDB entry 3j8d: Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Dengue virus 2 Thailand/16681/84; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 26 Å
Deposited: 2014-10-13
Authors: Zhang, X.Z., Sheng, J., Austin, S.K., Hoornweg, T., Smit, J.M., Kuhn, R.J., Diamond, M.S., Rossmann, M.G.
PDB entry 3j8f: Cryo-EM reconstruction of poliovirus-receptor complex
Classification: VIRUS/SIGNALING PROTEIN
Source organism: Homo sapiens; Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2014-10-20
Authors: Strauss, M., Filman, D.J., Belnap, D.M., Cheng, N., Noel, R.T., Hogle, J.M.
PDB entry 3j8g: Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit
Classification: RIBOSOME
Source organism: Escherichia coli K12
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2014-10-24
Authors: Zhang, X., Yan, K., Zhang, Y., Li, N., Ma, C., Li, Z., Zhang, Y., Feng, B., Liu, J., Sun, Y., Xu, Y., Lei, J., Gao, N.
PDB entry 3j8h: Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution
Classification: TRANSPORT PROTEIN/ISOMERASE
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2014-10-26
Authors: Yan, Z., Bai, X., Yan, C., Wu, J., Scheres, S.H.W., Shi, Y., Yan, N.
PDB entry 3j8i: Near-Atomic Resolution for One State of F-Actin
Classification: STRUCTURAL PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2014-11-06
Authors: Galkin, V.E.
PDB entry 3j8j: Tilted state of actin, T1
Classification: STRUCTURAL PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2014-11-07
Authors: Galkin, V.E., Orlova, A., Vos, M.R., Schroder, G.F., Egelman, E.H.
PDB entry 3j8k: Tilted state of actin, T2
Classification: STRUCTURAL PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2014-11-07
Authors: Galkin, V.E., Orlova, A., Vos, M.R., Schroder, G.F., Egelman, E.H.
PDB entry 3j8v: Cryo-EM reconstruction of quasi-HPV16 complex with H16.14J Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Human papillomavirus type 16; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.9 Å
Deposited: 2014-11-19
Authors: Guan, J., Hafenstein, S.
PDB entry 3j8w: Cryo-EM reconstruction of quasi-HPV16 complex with H263.A2 Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Human papillomavirus type 16; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 13 Å
Deposited: 2014-11-19
Authors: Guan, J., Hafenstein, S.
PDB entry 3j8x: High-resolution structure of no-nucleotide kinesin on microtubules
Classification: MOTOR PROTEIN/STRUCTURAL PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2014-11-20
Authors: Shang, Z., Zhou, K., Xu, C., Csencsits, R., Cochran, J.C., Sindelar, C.V.
PDB entry 3j8y: High-resolution structure of ATP analog-bound kinesin on microtubules
Classification: MOTOR PROTEIN/STRUCTURAL PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å
Deposited: 2014-11-20
Authors: Shang, Z., Zhou, K., Xu, C., Csencsits, R., Cochran, J.C., Sindelar, C.V.
PDB entry 3j8z: Cryo-EM reconstruction of quasi-HPV16 complex with H16.1A Fab
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Human papillomavirus type 16; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 14 Å
Deposited: 2014-11-20
Authors: Guan, J., Hafenstein, S.
PDB entry 3j91: Cryo-electron microscopy of Enterovirus 71 (EV71) procapsid in complex with Fab fragments of neutralizing antibody 22A12
Classification: VIRUS
Source organism: Enterovirus A71
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.8 Å
Deposited: 2014-11-24
Authors: Shingler, K.L., Cifuente, J.O., Ashley, R.E., Makhov, A.M., Conway, J.F., Hafenstein, S.
PDB entry 3j92: Structure and assembly pathway of the ribosome quality control complex
Classification: RIBOSOME/LIGASE
Source organism: Homo sapiens; Oryctolagus cuniculus; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2014-12-02
Authors: Shao, S., Brown, A., Santhanam, B., Hegde, R.S.
PDB entry 3j93: Fitting of Fab into the cryoEM density map of EV71 procapsid in complex with Fab22A12
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.8 Å
Deposited: 2014-12-02
Authors: Shingler, K.L., Cifuente, J.O., Ashley, R.E., Makhov, A.M., Conway, J.F., Hafenstein, S.
PDB entry 3j94: Structure of ATP-bound N-ethylmaleimide sensitive factor determined by single particle cryoelectron microscopy
Classification: HYDROLASE
Source organism: Cricetulus griseus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2014-12-05
Authors: Zhao, M., Wu, S., Cheng, Y., Brunger, A.T.
PDB entry 3j95: Structure of ADP-bound N-ethylmaleimide sensitive factor determined by single particle cryoelectron microscopy
Classification: HYDROLASE
Source organism: Cricetulus griseus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2014-12-05
Authors: Zhao, M., Wu, S., Cheng, Y., Brunger, A.T.
PDB entry 3j96: Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State I)
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2014-12-05
Authors: Zhao, M., Wu, S., Cheng, Y., Brunger, A.T.
PDB entry 3j97: Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State II)
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.8 Å
Deposited: 2014-12-05
Authors: Zhao, M., Wu, S., Cheng, Y., Brunger, A.T.
PDB entry 3j98: Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State IIIa)
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.4 Å
Deposited: 2014-12-05
Authors: Zhao, M., Wu, S., Cheng, Y., Brunger, A.T.
PDB entry 3j99: Structure of 20S supercomplex determined by single particle cryoelectron microscopy (State IIIb)
Classification: HYDROLASE
Source organism: Cricetulus griseus; Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.2 Å
Deposited: 2014-12-05
Authors: Zhao, M., Wu, S., Cheng, Y., Brunger, A.T.
PDB entry 3j9b: Electron cryo-microscopy of an RNA polymerase
Classification: RNA BINDING PROTEIN/TRANSFERASE/RNA
Source organism: Influenza A virus; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2014-12-16
Authors: Chang, S.H., Sun, D.P., Liang, H.H., Wang, J., Li, J., Guo, L., Wang, X.L., Guan, C.C., Boruah, B.M., Yuan, L.M., Feng, F., Yang, M.R., Wojdyla, J., Wang, J.W., Wang, M.T., Wang, H.W., Liu, Y.F.
PDB entry 3j9c: CryoEM single particle reconstruction of anthrax toxin protective antigen pore at 2.9 Angstrom resolution
Classification: TOXIN, TRANSPORT PROTEIN
Source organism: Bacillus anthracis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2014-12-25
Authors: Jiang, J., Pentelute, B.L., Collier, R.J., Zhou, Z.H.
PDB entry 3j9d: Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Classification: VIRAL PROTEIN
Source organism: Bluetongue virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2015-01-09
Authors: Zhang, X., Patel, A., Celma, C., Roy, P., Zhou, Z.H.
PDB entry 3j9e: Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Classification: VIRAL PROTEIN
Source organism: Bluetongue virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2015-01-10
Authors: Zhang, X., Patel, A., Celma, C., Roy, P., Zhou, Z.H.
PDB entry 3j9f: Poliovirus complexed with soluble, deglycosylated poliovirus receptor (Pvr) at 4 degrees C
Classification: VIRUS/CELL ADHESION
Source organism: Homo sapiens; Human poliovirus 1 Mahoney
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å
Deposited: 2015-01-15
Authors: Strauss, M., Filman, D.J., Belnap, D.M., Cheng, N., Noel, R.T., Hogle, J.M.
PDB entry 3j9g: Atomic model of the VipA/VipB, the type six secretion system contractile sheath of Vibrio cholerae from cryo-EM
Classification: CONTRACTILE PROTEIN
Source organism: Vibrio cholerae O1 biovar El Tor str. N16961
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2015-01-16
Authors: Kudryashev, M., Wang, R.Y.-R., Brackmann, M., Scherer, S., Maier, T., Baker, D., DiMaio, F., Stahlberg, H., Egelman, E.H., Basler, M.
PDB entry 3j9i: Thermoplasma acidophilum 20S proteasome
Classification: HYDROLASE
Source organism: Thermoplasma acidophilum
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2015-02-02
Authors: Li, X., Mooney, P., Zheng, S., Booth, C., Braunfeld, M.B., Gubbens, S., Agard, D.A., Cheng, Y.
PDB entry 3j9j: Structure of the capsaicin receptor, TRPV1, determined by single particle electron cryo-microscopy
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.275 Å
Deposited: 2015-02-02
Authors: Wang, R.Y.-R., Barad, B.A., Fraser, J.S., DiMaio, F.
PDB entry 3j9k: Structure of Dark apoptosome in complex with Dronc CARD domain
Classification: APOPTOSIS
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2015-02-04
Authors: Pang, Y., Bai, X., Yan, C., Hao, Q., Chen, Z., Wang, J., Scheres, S.H.W., Shi, Y.
PDB entry 3j9l: Structure of Dark apoptosome from Drosophila melanogaster
Classification: APOPTOSIS
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2015-02-04
Authors: Pang, Y., Bai, X., Yan, C., Hao, Q., Chen, Z., Wang, J., Scheres, S.H.W., Shi, Y.
PDB entry 3j9m: Structure of the human mitochondrial ribosome (class 1)
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2015-02-08
Authors: Amunts, A., Brown, A., Toots, J., Scheres, S.H., Ramakrishnan, V.
PDB entry 3j9o: CryoEM structure of a type VI secretion system
Classification: STRUCTURAL PROTEIN
Source organism: Francisella tularensis subsp. novicida U112
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2015-02-11
Authors: Clemens, D.L., Ge, P., Lee, B.-Y., Horwitz, M.A., Zhou, Z.H.
PDB entry 3j9p: Structure of the TRPA1 ion channel determined by electron cryo-microscopy
Classification: TRANSPORT PROTEIN
Source organism: Escherichia coli, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.24 Å
Deposited: 2015-02-14
Authors: Paulsen, C.E., Armache, J.-P., Gao, Y., Cheng, Y., Julius, D.
PDB entry 3j9q: Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2015-02-17
Authors: Ge, P., Scholl, D., Leiman, P.G., Yu, X., Miller, J.F., Zhou, Z.H.
PDB entry 3j9r: Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Classification: STRUCTURAL PROTEIN
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2015-02-17
Authors: Ge, P., Scholl, D., Leiman, P.G., Yu, X., Miller, J.F., Zhou, Z.H.
PDB entry 3j9s: Single particle cryo-EM structure of rotavirus VP6 at 2.6 Angstrom resolution
Classification: VIRAL PROTEIN
Source organism: Bovine rotavirus strain UK/G6
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2015-02-19
Authors: Grant, T., Grigorieff, N.
PDB entry 3j9t: Yeast V-ATPase state 1
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å
Deposited: 2015-02-23
Authors: Zhao, J., Benlekbir, S., Rubinstein, J.L.
PDB entry 3j9u: Yeast V-ATPase state 2
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 7.6 Å
Deposited: 2015-02-23
Authors: Zhao, J., Benlekbir, S., Rubinstein, J.L.
PDB entry 3j9v: Yeast V-ATPase state 3
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.3 Å
Deposited: 2015-02-23
Authors: Zhao, J., Benlekbir, S., Rubinstein, J.L.
PDB entry 3j9w: Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
Classification: RIBOSOME
Source organism: Bacillus subtilis subsp. subtilis str. 168
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2015-03-16
Authors: Sohmen, D., Chiba, S., Shimokawa-Chiba, N., Innis, C.A., Berninghausen, O., Beckmann, R., Ito, K., Wilson, D.N.
PDB entry 3j9x: A Virus that Infects a Hyperthermophile Encapsidates A-Form DNA
Classification: VIRUS
Source organism: Sulfolobus islandicus rod-shaped virus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2015-03-21
Authors: DiMaio, F., Yu, X., Rensen, E., Krupovic, M., Prangishvili, D., Egelman, E.
PDB entry 3j9y: Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
Classification: RIBOSOME
Source organism: Enterococcus faecalis; Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2015-03-23
Authors: Arenz, S., Nguyen, F., Beckmann, R., Wilson, D.N.
PDB entry 3j9z: Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2015-03-27
Authors: Li, W., Liu, Z., Koripella, R.K., Langlois, R., Sanyal, S., Frank, J.
PDB entry 3ja1: Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2015-03-30
Authors: Li, W., Liu, Z., Koripella, R.K., Langlois, R., Sanyal, S., Frank, J.
PDB entry 3ja4: RNA-dependent RNA polymerases of transcribing cypoviruses
Classification: TRANSFERASE
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2015-04-20
Authors: Liu, H., Cheng, L.
PDB entry 3ja5: Genome and RdRp structure within the capsid of no-transcribing cypovirus
Classification: TRANSFERASE
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2015-04-21
Authors: Liu, H., Cheng, L.
PDB entry 3ja6: Cryo-electron Tomography and All-atom Molecular Dynamics Simulations Reveal a Novel Kinase Conformational Switch in Bacterial Chemotaxis Signaling
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.7 Å
Deposited: 2015-04-21
Authors: Cassidy, C.K., Himes, B.A., Alvarez, F.J., Ma, J., Zhao, G., Perilla, J.R., Schulten, K., Zhang, P.
PDB entry 3ja7: Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2015-04-21
Authors: Sun, L., Zhang, X., Gao, S., Rao, P.A., Padilla-Sanchez, V., Chen, Z., Sun, S., Xiang, Y., Subramaniam, S., Rao, V.B., Rossmann, M.G.
PDB entry 3ja8: Cryo-EM structure of the MCM2-7 double hexamer
Classification: HYDROLASE
Source organism: Saccharomyces cerevisiae S288c
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2015-05-09
Authors: Li, N., Zhai, Y., Zhang, Y., Li, W., Yang, M., Lei, J., Tye, B.K., Gao, N.
PDB entry 3ja9: Structure of native human PCNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 22 Å
Deposited: 2015-05-19
Authors: Lau, W.C.Y., Li, Y., Zhang, Q., Huen, M.S.Y.
PDB entry 3jaa: HUMAN DNA POLYMERASE ETA in COMPLEX WITH NORMAL DNA AND INCO NUCLEOTIDE (NRM)
Classification: TRANSFERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 22 Å
Deposited: 2015-05-19
Authors: Lau, W.C.Y., Li, Y., Zhang, Q., Huen, M.S.Y.
PDB entry 3jab: Domain organization and conformational plasticity of the G protein effector, PDE6
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Bos taurus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 11 Å
Deposited: 2015-05-26
Authors: Zhang, Z., He, F., Constantine, R., Baker, M.L., Baehr, W., Schmid, M.F., Wensel, T.G., Agosto, M.A.
PDB entry 3jac: Cryo-EM study of a channel
Classification: METAL TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2015-06-05
Authors: Ge, J., Li, W., Zhao, Q., Li, N., Xiao, B., Gao, N., Yang, M.
PDB entry 3jad: Structure of alpha-1 glycine receptor by single particle electron cryo-microscopy, strychnine-bound state
Classification: SIGNALING PROTEIN/ANTAGONIST
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2015-06-08
Authors: Du, J., Lu, W., Wu, S.P., Cheng, Y.F., Gouaux, E.
PDB entry 3jae: Structure of alpha-1 glycine receptor by single particle electron cryo-microscopy, glycine-bound state
Classification: SIGNALING PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2015-06-08
Authors: Du, J., Lu, W., Wu, S.P., Cheng, Y.F., Gouaux, E.
PDB entry 3jaf: Structure of alpha-1 glycine receptor by single particle electron cryo-microscopy, glycine/ivermectin-bound state
Classification: SIGNALING PROTEIN
Source organism: Danio rerio
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2015-06-08
Authors: Du, J., Lu, W., Wu, S.P., Cheng, Y.F., Gouaux, E.
PDB entry 3jag: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2015-06-10
Authors: Brown, A., Shao, S., Murray, J., Hegde, R.S., Ramakrishnan, V.
PDB entry 3jah: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.45 Å
Deposited: 2015-06-10
Authors: Brown, A., Shao, S., Murray, J., Hegde, R.S., Ramakrishnan, V.
PDB entry 3jai: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Classification: RIBOSOME
Source organism: Homo sapiens; Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.65 Å
Deposited: 2015-06-10
Authors: Brown, A., Shao, S., Murray, J., Hegde, R.S., Ramakrishnan, V.
PDB entry 3jaj: Structure of the engaged state of the mammalian SRP-ribosome complex
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2015-06-16
Authors: Voorhees, R.M., Hegde, R.S.
PDB entry 3jak: Cryo-EM structure of GTPgammaS-microtubule co-polymerized with EB3 (merged dataset with and without kinesin bound)
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2015-06-16
Authors: Zhang, R., Nogales, E.
PDB entry 3jal: Cryo-EM structure of GMPCPP-microtubule co-polymerized with EB3
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2015-06-16
Authors: Zhang, R., Nogales, E.
PDB entry 3jam: CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
Classification: TRANSLATION
Source organism: Kluyveromyces lactis; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2015-06-17
Authors: Llacer, J.L., Hussain, T., Ramakrishnan, V.
PDB entry 3jan: Structure of the scanning state of the mammalian SRP-ribosome complex
Classification: RIBOSOME
Source organism: Oryctolagus cuniculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2015-06-17
Authors: Voorhees, R.M., Hegde, R.S.
PDB entry 3jao: Ciliary microtubule doublet
Classification: STRUCTURAL PROTEIN
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 23 Å
Deposited: 2015-06-18
Authors: Maheshwari, A., Obbineni, J.M., Bui, K.H., Shibata, K., Toyoshima, Y.Y., Ishikawa, T.
PDB entry 3jap: Structure of a partial yeast 48S preinitiation complex in closed conformation
Classification: TRANSLATION
Source organism: Kluyveromyces lactis; Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2015-06-18
Authors: Llacer, J.L., Hussain, T., Ramakrishnan, V.
PDB entry 3jar: Cryo-EM structure of GDP-microtubule co-polymerized with EB3
Classification: STRUCTURAL PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2015-06-19
Authors: Zhang, R., Nogales, E.
PDB entry 3jas: Cryo-EM structure of dynamic GDP-microtubule (14 protofilaments) decorated with kinesin
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2015-06-19
Authors: Zhang, R., Nogales, E.
PDB entry 3jat: Cryo-EM structure of GMPCPP-microtubule (14 protofilaments) decorated with kinesin
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2015-06-20
Authors: Zhang, R., Nogales, E.
PDB entry 3jau: The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Human enterovirus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.8 Å
Deposited: 2015-06-24
Authors: Fan, C., Ye, X.H., Ku, Z.Q., Zuo, T., Kong, L.L., Zhang, C., Shi, J.P., Liu, Q.W., Chen, T., Zhang, Y.Y., Jiang, W., Zhang, L.Q., Huang, Z., Cong, Y.
PDB entry 3jav: Structure of full-length IP3R1 channel in the apo-state determined by single particle cryo-EM
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2015-06-30
Authors: Fan, G., Baker, M.L., Wang, Z., Baker, M.R., Sinyagovskiy, P.A., Chiu, W., Ludtke, S.J., Serysheva, I.I.
PDB entry 3jaw: Atomic model of a microtubule seam based on a cryo-EM reconstruction of the EB3-bound microtubule (merged dataset containing tubulin bound to GTPgammaS, GMPCPP, and GDP)
Classification: STRUCTURAL PROTEIN
Source organism: Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2015-06-30
Authors: Zhang, R., Nogales, E.
PDB entry 3jax: Heavy meromyosin from Schistosoma mansoni muscle thick filament by negative stain EM
Classification: CONTRACTILE PROTEIN
Source organism: Schistosoma mansoni
Experimental method: ELECTRON MICROSCOPY
Resolution: 23 Å
Deposited: 2015-07-03
Authors: Sulbaran, G., Alamo, L., Pinto, A., Marquez, G., Mendez, F., Padron, R., Craig, R.
PDB entry 3jay: Atomic model of transcribing cytoplasmic polyhedrosis virus
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2015-07-06
Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.
PDB entry 3jaz: Atomic model of cytoplasmic polyhedrosis virus with ATP
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2015-07-06
Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.
PDB entry 3jb0: Atomic model of cytoplasmic polyhedrosis virus with GTP
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2015-07-06
Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.
PDB entry 3jb1: Atomic model of cytoplasmic polyhedrosis virus with SAM
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2015-07-06
Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.
PDB entry 3jb2: Atomic model of cytoplasmic polyhedrosis virus with SAM and GTP
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2015-07-06
Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.
PDB entry 3jb3: Atomic model of cytoplasmic polyhedrosis virus with SAM, GTP and ATP
Classification: VIRUS
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2015-07-06
Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.
PDB entry 3jb4: Structure of Ljungan virus: insight into picornavirus packaging
Classification: VIRUS
Source organism: Ljungan virus 87-012
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2015-07-21
Authors: Zhu, L., Wang, X.X., Ren, J.S., Porta, C., Wenham, H., Ekstrom, J.-O., Panjwani, A., Knowles, N.J., Kotecha, A., Siebert, A., Lindberg, M., Fry, E.E., Rao, Z.H., Tuthill, T.J., Stuart, D.I.
PDB entry 3jb5: Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear
Classification: VIRUS
Source organism: Propionibacterium phage PA6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2015-07-23
Authors: Chiou, J., Zhang, X., Marinelli, L.J., Modlin, R.L., Zhou, Z.H.
PDB entry 3jb6: In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
Classification: TRANSFERASE/VIRAL PROTEIN
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2015-08-02
Authors: Zhang, X., Ding, K., Yu, X.K., Chang, W., Sun, J.C., Zhou, Z.H.
PDB entry 3jb7: In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
Classification: TRANSFERASE/VIRAL PROTEIN/RNA
Source organism: Bombyx mori cypovirus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2015-08-03
Authors: Zhang, X., Ding, K., Yu, X.K., Chang, W., Sun, J.C., Zhou, Z.H.
PDB entry 3jb8: Insight into Three-dimensional structure of Maize Chlorotic Mottle Virus Revealed by Single Particle Analysis
Classification: VIRUS
Source organism: Maize chlorotic mottle virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2015-08-04
Authors: Wang, C.Y., Zhang, Q.F., Gao, Y.Z., Zhou, X.P., Ji, G., Huang, X.J., Hong, J., Zhang, C.X.
PDB entry 3jb9: Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution
Classification: RNA BINDING PROTEIN/RNA
Source organism: Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2015-08-09
Authors: Yan, C., Hang, J., Wan, R., Huang, M., Wong, C., Shi, Y.
PDB entry 3jba: The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Human papillomavirus type 16; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 12 Å
Deposited: 2015-08-11
Authors: Guan, J., Bywaters, S.M., Brendle, S.A., Lee, H., Ashley, R.E., Christensen, N.D., Hafenstein, S.
PDB entry 3jbb: Characterization of red-shifted phycobiliprotein complexes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris
Classification: PHOTOSYNTHESIS
Source organism: Halomicronema hongdechloris
Experimental method: ELECTRON MICROSCOPY
Resolution: 26 Å
Deposited: 2015-08-26
Authors: Li, Y., Lin, Y., Garvey, C., Birch, D., Corkery, R.W., Loughlin, P.C., Scheer, H., Willows, R.D., Chen, M.