LiteFold/PDB huggingface dataset:
PDB entry 9nzc: Crystal structure of AfNth1:Tg-DNA duplex complex in a pre-intermediate state
Classification: LYASE/DNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-03-31
Authors: Syed, A., Arvai, A.S., Tsai, C.L., Tainer, J.A.
PDB entry 9nzd: Crystal structure of AfNth1-K122A mutant bound to Tg-DNA duplex complex in an intermediate state
Classification: LYASE/DNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-03-31
Authors: Hitomi, K., Arvai, A.S., Syed, A., Parikh, S., Tainer, J.A.
PDB entry 9nzf: Crystal structure of Fab MAM01 in complex with minor repeat region peptide from circumsporozoite protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Plasmodium falciparum 3D7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-03-31
Authors: Jain, M., Wilson, I.A.
PDB entry 9nzh: Crystal Structure of Amylin-NHO-18 binder complex
Classification: DE NOVO PROTEIN
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2025-03-31
Authors: Bera, A.K., Lui, C., Kang, A., Baker, D.
PDB entry 9nzi: NONO homodimer bound to (R)-SKBG-1
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2025-03-31
Authors: Bond, C.S., Marshall, A.C., Villa Gomez, A., Hockley, T.K.
PDB entry 9nzj: DegQ, Klebsiella pneumoniae serine protease, delta-PDZ2 variant
Classification: HYDROLASE
Source organism: Escherichia coli; Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-01
Authors: Randall, G.T., Fellner, M.
PDB entry 9nzk: Crystal structure of Yck2 with LY364947
Classification: TRANSFERASE/INHIBITOR
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-04-01
Authors: Stogios, P.J., Shirley, D., Cowen, L.E., Willson, T., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9nzl: Crystal structure of Yck2 with DJS-02-24-06
Classification: TRANSFERASE/INHIBITOR
Source organism: Candida albicans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2025-04-01
Authors: Stogios, P.J., Shirley, D., Cowen, L.E., Willson, T., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9nzm: Crystal Structure of Kirsten Rat Sarcoma G12C Complexed with GMPPNP and Covalently Bound to an Adduct of {(2S)-4-[7-(8-chloronaphthalen-1-yl)-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-1-[(2Z)-2-fluoro-3-(pyridin-2-yl)prop-2-enoyl]piperazin-2-yl}acetonitrile
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.586 Å
Deposited: 2025-04-01
Authors: Sheriff, S., Pokross, M., Witmer, M.
PDB entry 9nzn: Crystal Structure of Kirsten Rat Sarcoma G12C Complexed with GDP and Covalently Bound to an Adduct of (2S)-1-{4-[(7P)-7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-1-yl)-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-4-yl]piperazin-1-yl}-2-fluoro-3-(1,3-thiazol-2-yl)propan-1-one
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.504 Å
Deposited: 2025-04-01
Authors: Sheriff, S., Pokross, M., Witmer, M.
PDB entry 9nzo: Structure of Al3Cas12f State I
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-04-01
Authors: Fregoso Ocampo, R., Guan, K., Taylor, D.W.
PDB entry 9nzp: Cryo-EM structure of RhCas12f-gRNA-DNA ternary complex
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Ruminiclostridium herbifermentans; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å
Deposited: 2025-04-01
Authors: Guan, K., Ocampo, R.F., Taylor, D.W.
PDB entry 9nzq: Cryo-EM structure of OsCas12f-gRNA-DNA ternary complex. State II
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Oscillibacter sp.; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
Deposited: 2025-04-01
Authors: Guan, K., Ocampo, R.F., Taylor, D.W.
PDB entry 9nzr: Structure of Al3Cas12f State II
Classification: DNA BINDING PROTEIN/DNA/RNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-04-01
Authors: Fregoso Ocampo, R., Guan, K.
PDB entry 9nzs: Cryo-EM structure of OsCas12f-gRNA-DNA ternary complex. State III
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Oscillibacter sp.; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2025-04-01
Authors: Guan, K., Taylor, D.W.
PDB entry 9nzt: Cryo-EM structure of OsCas12f-gRNA-DNA ternary complex State I
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Oscillibacter sp.; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2025-04-01
Authors: Guan, K., Ocampo, R.F., Taylor, D.W.
PDB entry 9nzu: Atomic resolution cryoEM structure of HPV16 bound to heparin
Classification: VIRUS
Source organism: Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2025-04-01
Authors: Langley, C.H., Hafenstein, S.L.
PDB entry 9nzy: Structure of Methanogen MtxX (Methanogen Marker Protein MMP4) from Methanothermobacter thermautotrophicus
Classification: UNKNOWN FUNCTION
Source organism: Methanothermobacter thermautotrophicus str. Delta H
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-01
Authors: Sutherland-Smith, A.J., Carbone, V., Schofield, L.R., Ronimus, R.S.
PDB entry 9nzz: Adeno-associated virus 9 variant AAV9.AAA.VQVGRTS
Classification: VIRUS LIKE PARTICLE
Source organism: Adeno-associated virus 9
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.84 Å
Deposited: 2025-04-01
Authors: Choi, H., Hou, C.F.D., Firnberg, E., Wei, H., Petrou, V.I., Kaelber, J.T.
PDB entry 9o00: Crystal structure of AfOgg1 in a DNA-free state
Classification: HYDROLASE, LYASE
Source organism: Archaeoglobus fulgidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-04-01
Authors: Huffman, J.L., Tang, H.Y.H., Syed, A., Arvai, A.S., Mol, C.D., Tainer, J.A.
PDB entry 9o01: Crystal structure of AfOgg1-D140N mutant bound to 8-OG DNA duplex in an intermediate state
Classification: HYDROLASE, LYASE/DNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-01
Authors: Huffman, J.L., Tang, H.Y.H., Syed, A., Arvai, A.S., Mol, C.D., Tainer, J.A.
PDB entry 9o02: Crystal structure of AfOgg1-K122S mutant bound to 8-OG DNA duplex in an intermediate state
Classification: HYDROLASE, LYASE/DNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-04-01
Authors: Huffman, J.L., Syed, A., Tang, H.Y.H., Arvai, A.S., Mol, C.D., Tainer, J.A.
PDB entry 9o03: Crystal structure of AfOgg1:8OG-DNA duplex in a product-bound state
Classification: HYDROLASE, LYASE/DNA
Source organism: Archaeoglobus fulgidus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-04-01
Authors: Arvai, A.S., Syed, A., Huffman, J.L., Mol, C.D., Hitomi, K., Tainer, J.A.
PDB entry 9o04: CryoEM structure of the FBXO42-CCDC6-PP2Ac degradasome
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-04-02
Authors: Hsu, P.L., Michaelian, N., Azumaya, C., Coassolo, S., Yauch, R.L.
PDB entry 9o05: Structure of human MAIT A-F7 TCR in complex with human MR1-riboflavin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-02
Authors: Abdelaal, M., Rossjohn, J., Awad, W.
PDB entry 9o06: Structure of human MAIT A-F7 TCR in complex with human MR1-10-formylmethylflavin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-04-02
Authors: Abdelaal, M., Rossjohn, J., Awad, W.
PDB entry 9o07: Structure of human MAIT A-F7 TCR in complex with human MR1-lumiflavin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-04-02
Authors: Abdelaal, M., Rossjohn, J., Awad, W.
PDB entry 9o08: Structure of human MAIT A-F7 TCR in complex with human MR1-lumichrome
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-04-02
Authors: Abdelaal, M., Rossjohn, J., Awad, W.
PDB entry 9o0b: X-ray Crystal Structure of Fission Yeast Fsc1 protein in P43212
Classification: CELL ADHESION
Source organism: Schizosaccharomyces pombe
Experimental method: X-RAY DIFFRACTION
Resolution: 2.504 Å
Deposited: 2025-04-02
Authors: Azuka, C.D., Jin, X.
PDB entry 9o0d: crystal structure of rSAMD9 tRNase domain
Classification: DNA BINDING PROTEIN
Source organism: Oryctolagus cuniculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.391 Å
Deposited: 2025-04-02
Authors: Deng, J.P.
PDB entry 9o0e: Adeno-associated virus 9 variant 496-AAA-498
Classification: VIRUS LIKE PARTICLE
Source organism: Adeno-associated virus 9
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-04-02
Authors: Choi, H., Hou, C.F.D., Firnberg, E., Wei, H., Petrou, V.I., Kaelber, J.T.
PDB entry 9o0f: Adeno-associated virus 9 variant AAV9.NVG7
Classification: VIRUS LIKE PARTICLE
Source organism: Adeno-associated virus 9
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-04-02
Authors: Choi, H., Hou, C.F.D., Firnberg, E., Wei, H., Petrou, V.I., Kaelber, J.T.
PDB entry 9o0g: CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Classification: ISOMERASE/DNA
Source organism: Methanosarcina mazei Go1; unidentified
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-04-02
Authors: Richman, D.E., Berger, J.M.
PDB entry 9o0h: The ubiquitin-associated domain of human thirty-eight negative kinase 1, fused to the 3TEL crystallization chaperone via a 2-glycine linker
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.24 Å
Deposited: 2025-04-02
Authors: Samarawickrama, P., Pedroza Romo, M.J., Ludlow, K., Keliiliki, A., Doukov, T., Moody, J.D.
PDB entry 9o0i: Cryo-EM structure of Local KwaA-KwaB complex
Classification: ANTIVIRAL PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å
Deposited: 2025-04-02
Authors: Zhang, Z., Patel, D.J.
PDB entry 9o0j: HtaA CR1 domain from Corynebacterium diphtheriae
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium diphtheriae NCTC 13129
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-04-02
Authors: Ford, J., Sawaya, M.R., Clubb, R.T.
PDB entry 9o0k: ChtA CR domain from Corynebacterium diphtheriae
Classification: TRANSPORT PROTEIN
Source organism: Corynebacterium diphtheriae NCTC 13129
Experimental method: X-RAY DIFFRACTION
Resolution: 1.629 Å
Deposited: 2025-04-02
Authors: Ford, J., Sawaya, M.R., Clubb, R.T.
PDB entry 9o0l: CryoEM structure of the CCDC6-PP2Ac multimer
Classification: STRUCTURAL PROTEIN/Hydrolase
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-04-02
Authors: Hsu, P.L., Michaelian, N., Azumaya, C., Coassolo, S., Yauch, R.L.
PDB entry 9o0n: Crystal structure of GDP-bound wild type KRAS in complex with MRTX1133
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-04-03
Authors: Bonsor, D.A., Simanshu, D.K.
PDB entry 9o0o: Crystal structure of GMPPNP-bound wild type KRAS in complex with MRTX1133
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-03
Authors: Bonsor, D.A., Simanshu, D.K.
PDB entry 9o0p: Crystal structure of GDP-bound mutant MRAS in complex with MRTX1133
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-04-03
Authors: Bonsor, D.A., Simanshu, D.K.
PDB entry 9o0q: Crystal structure of GMPPNP-bound mutant MRAS in complex with MRTX1133
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-03
Authors: Bonsor, D.A., Simanshu, D.K.
PDB entry 9o0r: Crystal structure of wild-type KRAS (GDP-bound) in complex with MRTX849 (adagrasib)
Classification: ONCOPROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-04-03
Authors: Chan, A.H., Ashraf, M., Simanshu, D.K.
PDB entry 9o0s: Crystal structure of KRAS-Q61R mutant, GMPPNP-bound
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2025-04-03
Authors: Chan, A.H., Davies, D., Abendroth, J., Simanshu, D.K.
PDB entry 9o0u: Crystal structure of CRAF/MEK1 complex with PLX4720 and CH5126766
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.91 Å
Deposited: 2025-04-03
Authors: Jang, D.M., Eck, M.J.
PDB entry 9o0v: Crystal structure of CRAF/MEK1 complex with PLX4720, CH5126766, and AMPPNP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2025-04-03
Authors: Jang, D.M., Eck, M.J.
PDB entry 9o0w: Co-crystal structure of human TREX1 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.43 Å
Deposited: 2025-04-03
Authors: Dehghani-Tafti, S., Dong, A., Li, Y., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9o0x: Co-crystal structure of human TREX1 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-04-03
Authors: Dehghani-Tafti, S., Dong, A., Li, Y., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9o0y: Co-crystal structure of human TREX1 in complex with an inhibitor
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2025-04-03
Authors: Dehghani-Tafti, S., Dong, A., Li, Y., Ackloo, S., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9o10: Kv2.1 with voltage sensor in the up conformation under high potassium
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-04-03
Authors: Mandala, V.S., MacKinnon, R.
PDB entry 9o11: Kv2.1 with voltage sensor in the up conformation under low potassium
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-04-03
Authors: Mandala, V.S., MacKinnon, R.
PDB entry 9o12: Kv2.1 in an intermediate conformation with 2 voltage sensors down and an open pore
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2025-04-03
Authors: Mandala, V.S., MacKinnon, R.
PDB entry 9o13: Kv2.1 with 4 voltage sensors down and a constricted pore
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å
Deposited: 2025-04-03
Authors: Mandala, V.S., MacKinnon, R.
PDB entry 9o14: Crystal Structure of BCL-2 in complex with a stapled BAD BH3 peptide BAD SAHB 4.2
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-04-03
Authors: Seo, H.-S., DeAngelo, T.M., Bird, G.H., Walensky, L.D., Dhe-Paganon, S.
PDB entry 9o15: Crystal Structure of BCL-2 (G101V) mutant in complex with a stapled BAD BH3 peptide BAD SAHB 4.2
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2025-04-03
Authors: Seo, H.-S., DeAngelo, T.M., Bird, G.H., Walensky, L.D., Dhe-Paganon, S.
PDB entry 9o16: Crystal Structure of human BCL-2 (R129L) mutant in complex with a stapled BAD BH3 peptide BAD SAHB 4.2
Classification: APOPTOSIS
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-04-03
Authors: Seo, H.-S., DeAngelo, T.M., Bird, G.H., Walensky, L.D., Dhe-Paganon, S.
PDB entry 9o17: Cryo-EM structure of Methanosarcina acetivorans 70S ribosome
Classification: RIBOSOME
Source organism: Methanosarcina acetivorans
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-04-03
Authors: Ghosh, A., Fordjour, G.N.R., Armache, J.-P., Ferry, J.G., Murakami, K.S., Bevilacqua, P.C.
PDB entry 9o19: Pseudomonas aeruginosa ATPase State1
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1a: Pseudomonas aeruginosa ATPase State1 F1Fo focused
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1b: Pseudomonas aeruginosa ATPase State1 Fo focused
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1c: Pseudomonas aeruginosa ATPase State2
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.05 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1d: Pseudomonas aeruginosa ATPase State2a F1Fo focused
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1e: Pseudomonas aeruginosa ATPase State2a Fo focused
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1f: Pseudomonas aeruginosa ATPase State2b F1Fo focused
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1g: Pseudomonas aeruginosa ATPase State2b Fo focused
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1h: Pseudomonas aeruginosa ATPase State3
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.17 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1i: TMEM16F in liposomes in the absence of Ca2+ (contracted state)
Classification: LIPID TRANSPORT
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-04-03
Authors: Feng, Z., Accardi, A.
PDB entry 9o1j: Pseudomonas aeruginosa ATPase State3 F1Fo focused
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1k: Pseudomonas aeruginosa ATPase State3 Fo focused
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-04-03
Authors: Stewart, A.G., Sobti, M.
PDB entry 9o1r: Heparanase P6 in complex with fragment J4
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o1s: Heparanase P6 in complex with fragment J11
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o1t: Heparanase P6 in complex with fragment J13
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o1u: Heparanase P6 in complex with fragment J16
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o1v: Heparanase P6 in complex with fragment J21
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackon, C.J.
PDB entry 9o1w: Heparanase P6 in complex with fragment J25
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o1x: Heparanase P6 in complex with fragment J28
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jakcson, C.J.
PDB entry 9o1y: Heparanase P6 in complex with fragment J29
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o1z: Heparanase P6 in complex with fragment J31
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o20: Heparanase P6 in complex with fragment J32
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.83 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o21: Heparanase P6 in complex with fragment J34
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o22: Heparanase P6 in complex with fragment J36
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o23: Heparanase P6 in complex with fragment J37
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o24: Heparanase P6 in complex with fragment J40
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o25: Heparanase P6 in complex with fragment J41
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o26: Heparanase P6 in complex with fragment J51
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o27: Heparanase P6 in complex with fragment J56
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o28: Heparanase P6 in complex with fragment J59
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o29: Heparanase P6 in complex with fragment J61
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2a: Heparanase P6 in complex with fragment J69
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2b: Heparanase P6 in complex with fragment J71 (caffeine)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2c: Heparanase P6 in complex with fragment J72
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2d: Heparanase P6 in complex with fragment J74 (L-norepinephrine)
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2e: Heparanase P6 in complex with fragment J82
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2f: Heparanase P6 in complex with fragment J85
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2g: Heparanase P6 in complex with fragment J91
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2h: Heparanase P6 in complex with fragment J92
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2i: Heparanase P6 in complex with fragment C2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2j: Heparanase P6 in complex with fragment C5
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2k: Heparanase P6 in complex with fragment C12
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2l: Heparanase P6 in complex with fragment C17
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2m: Heparanase P6 in complex with fragment C5A
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-04-03
Authors: Davies, L.J., Frkic, R.L., Jackson, C.J.
PDB entry 9o2n: cis-CaaD Y103F mutant soaked with cis-3-chloroacrylic acid
Classification: HYDROLASE
Source organism: coryneform bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-04-04
Authors: Silva, K., Geiger, J.H., Draths, K.
PDB entry 9o2q: BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-04-04
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 9o2r: BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-04-04
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 9o2s: BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-04-04
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 9o2t: BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-04-04
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 9o2u: BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å
Deposited: 2025-04-04
Authors: DeLaitsch, A.T., Bjorkman, P.J.
PDB entry 9o2w: Crystal structure of NDM-1 complexed with compound 3
Classification: HYDROLASE
Source organism: Klebsiella pneumoniae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-04-04
Authors: Jacobs, L.M.C., Chen, Y.
PDB entry 9o2x: Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.29 Å
Deposited: 2025-04-04
Authors: Majumdar, C., Kent, A., Hamlish, N., Zhu, C., Cate, J.
PDB entry 9o2y: Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Classification: RIBOSOME
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2025-04-04
Authors: Majumdar, C., Cate, J.H.D.
PDB entry 9o2z: Autoinhibited BRAF:(14-3-3)2:MEK complex from Insect cells
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2025-04-04
Authors: Martinez Fiesco, J.A., Zhang, P.
PDB entry 9o35: Crystal structure of DoxA in complex with daunorubicin
Classification: OXIDOREDUCTASE
Source organism: Streptomyces peucetius subsp. caesius ATCC 27952
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2025-04-04
Authors: Newmister, S.A., Harte, R.J., Kim, R.Q., Metsa-Ketela, M., Sherman, D.H.
PDB entry 9o36: CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-04-05
Authors: Robertson, M.J., Skiniotis, G.
PDB entry 9o38: Transmembrane domains of the human sweet receptor (TAS1R2 + TAS1R3) from Class 3 particles (rigidly fitted from PDB:9NOX and 9NOR)
Classification: HYDROLASE/IMMUNE SYSTEM
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-04-06
Authors: Juen, Z., Lu, Z., Yu, R., Chang, A.N., Wang, B., Fitzpatrick, A.W.P., Zuker, C.S.
PDB entry 9o3b: PKM2 bound to MCTI-566
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.416 Å
Deposited: 2025-04-07
Authors: Stuckey, J.A.
PDB entry 9o3d: Crystal structure of broadly neutralizing antibody HEPC108 in complex with Hepatitis C virus envelope glycoprotein E2 ectodomain
Classification: IMMUNE SYSTEM
Source organism: Hepatitis C virus subtype 1b; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-04-07
Authors: Flyak, A.I., Wilcox, X.E.
PDB entry 9o3e: Plasmodium falciparum 20S proteasome bound to inhibitor 159
Classification: CYTOSOLIC PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Deposited: 2025-04-07
Authors: Han, Y., Deng, X., Ray, S., Phillips, M.
PDB entry 9o3f: Plasmodium falciparum 20S proteasome bound to inhibitor 296
Classification: CYTOSOLIC PROTEIN
Source organism: Plasmodium falciparum 3D7
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2025-04-07
Authors: Han, Y., Deng, X., Ray, S., Phillips, M.
PDB entry 9o3h: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2025-04-07
Authors: Syroegin, E.A., Aleksandrova, E.V., Kruglov, A.A., Paranjpe, M.N., Svetlov, M.S., Polikanov, Y.S.
PDB entry 9o3i: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-04-07
Authors: Syroegin, E.A., Aleksandrova, E.V., Kruglov, A.A., Paranjpe, M.N., Svetlov, M.S., Polikanov, Y.S.
PDB entry 9o3j: Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-04-07
Authors: Syroegin, E.A., Aleksandrova, E.V., Kruglov, A.A., Paranjpe, M.N., Svetlov, M.S., Polikanov, Y.S.
PDB entry 9o3k: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-04-07
Authors: Syroegin, E.A., Aleksandrova, E.V., Kruglov, A.A., Paranjpe, M.N., Svetlov, M.S., Polikanov, Y.S.
PDB entry 9o3l: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, deacylated A-site tRNAphe, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAphe at 2.75A resolution
Classification: RIBOSOME
Source organism: Escherichia coli; Thermus thermophilus HB8; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2025-04-07
Authors: Syroegin, E.A., Aleksandrova, E.V., Kruglov, A.A., Paranjpe, M.N., Svetlov, M.S., Polikanov, Y.S.
PDB entry 9o3m: K40F mutant of hCRBPII bound to fentanyl
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2025-04-07
Authors: Bingham, C., Geiger, J.H.
PDB entry 9o3q: Apo-structure of a chondroitinase
Classification: LYASE
Source organism: Bacteroides caccae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-04-07
Authors: Alvarez, B., Boraston, A.B.
PDB entry 9o3v: Human 80S ribosome stalled on MYC nascent chain
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-04-07
Authors: Sauer, P.V., Schuller, A.P., Hamann, L.G.
PDB entry 9o3w: Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2025-04-07
Authors: Sauer, P.V., Schuller, A.P., Hamann, L.G.
PDB entry 9o3y: Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Classification: TRANSLATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å
Deposited: 2025-04-07
Authors: Sauer, P.V., Schuller, A.P., Hamann, L.G.
PDB entry 9o40: cryo-EM structure of TolQR conformation1 in SMA nanodiscs
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.92 Å
Deposited: 2025-04-08
Authors: Luo, Y.B., Shen, C.R.
PDB entry 9o41: Crystal structure of the L411A mutant of pregnane X receptor ligand binding domain (apo form)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-04-08
Authors: Huber, A.D., Garcia-Maldonado, E., Miller, D.J., Chen, T.
PDB entry 9o42: Crystal structure of the L411A mutant of pregnane X receptor ligand binding domain in complex with SJPYT-328
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.51 Å
Deposited: 2025-04-08
Authors: Huber, A.D., Garcia-Maldonado, E., Miller, D.J., Chen, T.
PDB entry 9o43: Crystal structure of the L411A mutant of pregnane X receptor ligand binding domain in complex with SJPYT-331
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2025-04-08
Authors: Huber, A.D., Garcia-Maldonado, E., Miller, D.J., Chen, T.
PDB entry 9o44: Crystal structure of the L411W mutant of pregnane X receptor ligand binding domain (apo form)
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-04-08
Authors: Huber, A.D., Garcia-Maldonado, E., Miller, D.J., Chen, T.
PDB entry 9o45: Crystal structure of the L411W mutant of pregnane X receptor ligand binding domain in complex with SJPYT-328
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2025-04-08
Authors: Huber, A.D., Garcia-Maldonado, E., Miller, D.J., Chen, T.
PDB entry 9o46: Crystal structure of the L411W mutant of pregnane X receptor ligand binding domain in complex with SJPYT-331
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.02 Å
Deposited: 2025-04-08
Authors: Huber, A.D., Garcia-Maldonado, E., Miller, D.J., Chen, T.
PDB entry 9o47: RNA dodecamer containing a serinol nucleic acid.
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2025-04-08
Authors: Harp, J.M., Egli, M.E.
PDB entry 9o48: Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex in the Ca2+ bound state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-04-08
Authors: Cassell, S.J., Khoshouei, M., Wilhelm, W.A., Whicher, J.R.
PDB entry 9o49: Cryo-EM structure of Rubisco with hetero small subunit 1A3B form I
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-04-08
Authors: Zhang, Z., Bolla, J.
PDB entry 9o4a: Ec83 Retron PtuAB mutant complex
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-04-08
Authors: Wang, C., Rish, A., Fu, T.M.
PDB entry 9o4b: Cryo-EM structure of in-vitro alpha-synuclein fibril bound with Exemplar-6 PET-radioligand
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-04-08
Authors: Sanchez, J.C., Perez, R.M., Borcik, C.G., Guarino, D.S., Dhavala, D.D., Baumgardt, J.K., Shaffer, K.D., Kotzbauer, P.T., Mach, R.H., Rienstra, C.M., Petersson, E.J., Wright, E.R.
PDB entry 9o4c: Cryo-EM structure of Rubisco with hetero small subunit 1A3B form II
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-04-08
Authors: Zhang, Z., Bolla, J.
PDB entry 9o4d: GutD in complex with guanine and cWW
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces purpureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-04-08
Authors: Gering, H.E., Makris, T.M., Phan, H.N.
PDB entry 9o4f: Pre-fusion Stabilized HERV-K Envelope Trimer Ectodomain
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2025-04-08
Authors: Shek, J., Sun, C., Hastie, K., Saphire, E.O.
PDB entry 9o4g: Cryo-EM structure of the CHSY3-CHPF1 chondroitin synthase heterodimer
Classification: SUGAR BINDING PROTEIN, TRANSFERASE
Source organism: Homo sapiens; Human adenovirus sp.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2025-04-08
Authors: Tehari, D., Cortiella, N., Perez, C., Moremen, K.
PDB entry 9o4j: Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA Complex
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-04-08
Authors: Dahal, P., Sharma, K., Borgnia, M., Zhou, P.
PDB entry 9o4k: Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-04-08
Authors: Dahal, P., Sharma, K., Borgnia, M., Zhou, P.
PDB entry 9o4l: Crystal structure of Human p38 alpha MAPK in Complex with MW01-8 -066WH
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2025-04-08
Authors: Brunzelle, J.S., Shuvalova, L., Roy, S.M., Watterson, D.M.
PDB entry 9o4m: Crystal structure of Ubiquitin Carboxy Terminal Hydrolase L1 Q209C mutant covalently crosslinked to ubiquitin genetically encoded with N6-(6-bromohexanoyl)-L-lysine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-04-08
Authors: Pannala, N., Patel, R., Das, C.
PDB entry 9o4n: Cryo-EM structure of CR12042 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/California/07/2009(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-04-08
Authors: Jo, G., Ward, A.B.
PDB entry 9o4o: Cryo-EM structure of CR12044 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/California/07/2009(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2025-04-08
Authors: Jo, G., Ward, A.B.
PDB entry 9o4p: Cryo-EM structure of AF9C-GL Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/California/07/2009(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-04-08
Authors: Jo, G., Ward, A.B.
PDB entry 9o4q: Cryo-EM structure of Z1A11-GL Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Influenza A virus (A/California/07/2009(H1N1))
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2025-04-08
Authors: Jo, G., Ward, A.B.
PDB entry 9o4s: RT XFEL structure of Soybean Lipoxygenase-1 in small unit-cell
Classification: OXIDOREDUCTASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-08
Authors: Wolff, A.M., Thompson, M.C.
PDB entry 9o4t: RT XFEL structure of Soybean Lipoxygenase-1 in large unit-cell
Classification: OXIDOREDUCTASE
Source organism: Glycine max
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-04-08
Authors: Wolff, A.M., Thompson, M.C.
PDB entry 9o4u: Apo-structure of a beta-D-glucuronate dehydratase
Classification: LYASE
Source organism: Bacteroides caccae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2025-04-08
Authors: Alvarez, B., Hettle, A., Boraston, A.B.
PDB entry 9o4v: RNase A in complex with Pseudouridine Vanadate and decavanadates
Classification: HYDROLASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-04-08
Authors: Gutierrez, C.S., Lim, D.C., Silkenath, B., Kojasoy, V., Raines, R.T.
PDB entry 9o4x: Gamma delta T cell receptor bound to CD1d
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2025-04-09
Authors: Rice, M.T., Gully, B.S., Rossjohn, J.
PDB entry 9o4y: GAS41 YEATS domain in complex with DLG-1
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-04-09
Authors: Clegg, B.D., Winkler, A., Linhares, B.M., Cierpicki, T., Grembecka, J.
PDB entry 9o50: Room-temperature X-ray structure of Thermus thermophilus SHMT in complex with tetrahydrofolate (THF)
Classification: TRANSFERASE
Source organism: Thermus thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-04-09
Authors: Kovalevsky, A., Drago, V.N., Phillips, R.S.
PDB entry 9o51: Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex in the Ca2+ free state
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-04-09
Authors: Cassell, S.J., Khoshouei, M., Wilhelm, W.A., Whicher, J.R.
PDB entry 9o52: Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex bound to the bee toxin apamin
Classification: TRANSPORT PROTEIN/TOXIN
Source organism: Apis mellifera; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-04-09
Authors: Cassell, S.J., Khoshouei, M., Wilhelm, W.A., Whicher, J.R.
PDB entry 9o53: Cryo-EM structure of the human SK2-4 chimera/calmodulin channel complex bound to a small molecule inhibitor
Classification: TRANSPORT PROTEIN/INHIBITOR
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-04-09
Authors: Cassell, S.J., Khoshouei, M., Wilhelm, W.A., Whicher, J.R.
PDB entry 9o54: ADAM17 Prodomain-Metalloproteinase Domains bound to MEDI3622 Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-04-09
Authors: Slone, C.E., Maciag, J.J.
PDB entry 9o55: Structure of a synthetic antibody (RM010) in complex with a class I MHC presenting a hapten-peptide conjugate
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Deposited: 2025-04-09
Authors: Hu, Z., Rajak, E., Maso, L., Koide, S.