LiteFold/PDB huggingface dataset:
PDB entry 9mhj: The structure of native Zcp
Classification: METAL BINDING PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2024-12-12
Authors: Bera, A.K., Liyayi, I.K., Criss, A.K., Noinaj, N.
PDB entry 9mhk: The structure of Zcp triple mutant H29A, H31A, H142A
Classification: METAL BINDING PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2024-12-12
Authors: Bera, A.K., Liyayi, I.K., Criss, A.K., Noinaj, N.
PDB entry 9mhl: The structure of Zcp with zinc bound
Classification: METAL BINDING PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-12-12
Authors: Bera, A.K., Liyayi, I.K., Criss, A.K., Noinaj, N.
PDB entry 9mhm: The structure of Zcp with copper bound
Classification: METAL BINDING PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2024-12-12
Authors: Bera, A.K., Liyayi, I.K., Criss, A.K., Noinaj, N.
PDB entry 9mhn: The structure of Zcp with cobalt bound
Classification: METAL BINDING PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-12-12
Authors: Bera, A.K., Liyayi, I.K., Criss, A.K., Noinaj, N.
PDB entry 9mho: The structure of Zcp with nickel bound
Classification: METAL BINDING PROTEIN
Source organism: Neisseria gonorrhoeae FA 1090
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-12-12
Authors: Bera, A.K., Liyayi, I.K., Criss, A.K., Noinaj, N.
PDB entry 9mhp: cryo-EM structure of full-length and internally HIS-tagged yeast E3 ubiquitin ligase Tom1p, in a closed-conformation state with helical repeat solenoid architecture
Classification: GENE REGULATION
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.97 Å
Deposited: 2024-12-12
Authors: Madrigal, J.M., Schubert, H.L.
PDB entry 9mhq: G169V variant of Streptomyces coelicolor coproheme decarboxylase in complex with Monovinyl, Monopropionate Deuteroheme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-12-12
Authors: Carriuolo, A.C., Lanzilotta, W.N.
PDB entry 9mhr: G169L variant of Coproheme Decarboxylase from Streptomyces Coelicolor in complex with Monovinyl, Monopropionate Deuteroheme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-12-12
Authors: Carriuolo, A.J., Lanzilotta, W.N.
PDB entry 9mhs: Drimenol synthase
Classification: LYASE
Source organism: Aquimarina spongiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2024-12-12
Authors: Osika, K.R., Gaynes, M.N., Christianson, D.W.
PDB entry 9mht: CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI/DNA COMPLEX
Classification: TRANSFERASE/DNA
Source organism: Haemophilus haemolyticus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 1998-08-07
Authors: O'Gara, M., Horton, J.R., Roberts, R.J., Cheng, X.
PDB entry 9mhu: Cryo-EM structure of S. aureus TarGH in complex with Targocil-II and ATP-gamma-S in a catalytically competent conformation
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-12-12
Authors: Peters, S.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 9mhv: Monkey TLR7 ectodomain with small molecule agonist 9
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-12-12
Authors: Critton, D.A.
PDB entry 9mhw: Human TLR8 ectodomain with small molecule agonist 9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.52 Å
Deposited: 2024-12-12
Authors: Critton, D.A.
PDB entry 9mhx: Human TLR8 ectodomain with small molecule agonist 7
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.13 Å
Deposited: 2024-12-12
Authors: Critton, D.A.
PDB entry 9mhy: Human TLR8 ectodomain with small molecule agonist 1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2024-12-12
Authors: Critton, D.A.
PDB entry 9mhz: Cryo-EM structure of S. aureus TarGH in complex with Targocil-II and ATP-gamma-S in a catalytically incompetent conformation
Classification: MEMBRANE PROTEIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-12-12
Authors: Peters, S.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 9mi0: 61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-12-12
Authors: Phulera, S., Ozorowski, G., Ward, A.B.
PDB entry 9mi2: Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (C2 form)
Classification: TRANSFERASE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-12-12
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9mi3: Cryo-EM structure of SARS-CoV-2 spike protein in complex with neutralizing human antibody WRAIR-2008
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2024-12-12
Authors: Jensen, J.L., Thomas, P.V., Joyce, M.G.
PDB entry 9mi4: Crystal structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum in complex with inhibitor WIN-3-115
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.94 Å
Deposited: 2024-12-12
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9mi5: Crystal structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum in complex with inhibitor BKI-1606
Classification: TRANSFERASE
Source organism: Cryptosporidium parvum Iowa II
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2024-12-12
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9mi6: Crystal structure of human FcRn in complex with nipocalimab Fab fragment
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2024-12-12
Authors: Xu, R., Meador, J.
PDB entry 9mi7: Crystal Structure of ADI-64597 ((human Fab, with substituted IgG1-CH1 (HC-L128R and K147R) and substituted kappa constant domain (LC-Q124E, V133Q, and T178R))
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.22 Å
Deposited: 2024-12-12
Authors: Battles, M.B., Welin, M., Laursen, M.
PDB entry 9mi8: Human PARP1 N-terminal domains bound to nicked DNA
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-12-12
Authors: Sverzhinsky, A., Pascal, J.M.
PDB entry 9mia: 206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-12-12
Authors: Phulera, S., Ozorowski, G., Ward, A.B.
PDB entry 9mib: 206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-12-12
Authors: Phulera, S., Ozorowski, G., Ward, A.B.
PDB entry 9mic: Crystal structure of the VRC01-class antibody 4D01, derived from GT1.1 vaccination, in complex with eOD-GT8
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2024-12-12
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mid: Crystal structure of the VRC01-class antibody 3G08, derived from GT1.1 vaccination, in complex with eOD-GT8
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2024-12-12
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mie: Human NLRP3 complex with compound 2 in the closed hexamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å
Deposited: 2024-12-12
Authors: Mammoliti, O., Carbajo, R.J., Perez-Benito, L., Yu, X.
PDB entry 9mif: Crystal structure of the VRC01-class antibody 9C09, derived from GT1.1 vaccination, in complex with eOD-GT8
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2024-12-12
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mig: Cryo-EM structure of Human NLRP3 complex with compound 3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-12-12
Authors: Mammoliti, O., Carbajo, R.J., Perez-Benito, L., Yu, X., Prieri, M.L.C., Bontempi, L., Embrechts, S., Paesmans, I., Bassi, M., Bhattacharya, A., Roman, S.C., Hoog, S.D., Demin, S., Gijsen, H.J.M., Hache, G., Jacobs, T., Jerhaoui, S., Leenaerts, J., Lutter, F.H., Matico, R., Oehlrich, D., Perrier, M., Ryabchuk, P., Schepens, W., Sharma, S., Somers, M., Suarez, J., Surkyn, M., Opdenbosch, N.V., Verhulst, T., Bottelbergs, A.
PDB entry 9mih: 273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-12-12
Authors: Phulera, S., Ozorowski, G., Ward, A.B.
PDB entry 9mii: 253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human immunodeficiency virus 1; Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-12-12
Authors: Phulera, S., Ozorowski, G., Ward, A.B.
PDB entry 9mik: Gallid alphaherpesvirus-1 large tegument protein bipartite NLS1 in complex with Importin alpha
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2024-12-12
Authors: Nath, B.K., Swarbrick, C.M.D., Sarker, S., Forwood, J.K.
PDB entry 9mil: Superoxide dismutase residues 28-39 with G37R mutation
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-12-13
Authors: Sawaya, M.R., Hirschbeck, S.S., Eisenberg, D.S., Do, T.
PDB entry 9mim: The 100-K crystal structure of CYP199A4 bound to 3-methylaminobenzoic acid (dataset 1, increasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.369 Å
Deposited: 2024-12-13
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9min: Structure of a designed minibinder to NYESO1-A*02:01
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens; Lama glama; synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-12-13
Authors: Jude, K.M., Householder, K.D.
PDB entry 9mio: The 150-K crystal structure of CYP199A4 bound to 3-methylaminobenzoic acid (dataset 2, increasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.395 Å
Deposited: 2024-12-13
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9mip: CryoEM structure of the Protein Phasphatase 2A (Aalpha-B56gamma-Calpha) holoenzyme complex
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-12-13
Authors: Day, A., Taylor, D.
PDB entry 9miq: Wild-type Coproheme Decarboxylase from Streptomyces Coelicolor in complex with Monovinyl, Monopropionate Deuteroheme
Classification: BIOSYNTHETIC PROTEIN
Source organism: Streptomyces coelicolor
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-12-13
Authors: Carriuolo, A.J., Lanzilotta, W.N.
PDB entry 9mir: CryoEM structure of ALK3-ActRIIB bound to BMP6
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-12-13
Authors: Goebel, E.J., Saotome, K., Franklin, M.C.
PDB entry 9mis: Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (P21 form)
Classification: TRANSFERASE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2024-12-13
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9mit: Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (Hepes bound)
Classification: TRANSFERASE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-12-13
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9miu: Crystal Structure of Human DAPK1 Catalytic Subunit Complexed with Compound MW01-9-039SRM.
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-13
Authors: Minasov, G., Winsor, J., Roy, S.M., Watterson, D.M., Shuvalova, L.
PDB entry 9miv: Native tagless Lassa virus spike complex pH 6.0
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Lassa virus Josiah
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.02 Å
Deposited: 2024-12-13
Authors: Katz, M., Cohen-Dvashi, H., Diskin, R.
PDB entry 9miw: Fatty Acid Binding Protein 4 (FABP4) Complexed with Perfluorooctanoic Acid (PFOA)
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2024-12-13
Authors: Birchfield, A.B., Musayev, F.N., Fuglestad, B.
PDB entry 9miy: Focused reconstruction of the transmembrane region of the Lassa virus spike complex
Classification: VIRAL PROTEIN
Source organism: Lassa virus Josiah
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2024-12-13
Authors: Katz, M., Cohen-Dvashi, H., Diskin, R.
PDB entry 9miz: Fatty Acid Binding Protein 4 (FABP4) Complexed with Perfluorodecanoic Acid (PFDA)
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2024-12-13
Authors: Birchfield, A.B., Musayev, F.N., Fuglestad, B.
PDB entry 9mj1: Native tagless Lassa virus spike complex bound at pH 8.0
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Lassa virus Josiah
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å
Deposited: 2024-12-13
Authors: Katz, M., Cohen-Dvashi, H., Diskin, R.
PDB entry 9mj2: Flag-tag Lassa virus spike complex at pH 6.0
Classification: VIRAL PROTEIN
Source organism: Lassa virus Josiah
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2024-12-13
Authors: Katz, M., Cohen-Dvashi, H., Diskin, R.
PDB entry 9mj3: Crystal structure of the VRC01-class antibody 12A01, derived from GT1.1 vaccination, in complex with eOD-GT8
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2024-12-13
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mj4: Yeast V-ATPase Vo proton channel bound to nanobody 2WVA149
Classification: PROTON TRANSPORT
Source organism: Lama glama; Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-12-13
Authors: Wilkens, S., Knight, K.
PDB entry 9mj5: Catalytic domain of human DNA polymerase alpha in complex with DNA and RPA
Classification: Replication/DNA/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-12-13
Authors: Baranovskiy, A.G., Morstadt, L.M., Romero, E.E., Babayeva, N.D., Tahirov, T.H.
PDB entry 9mj6: Crystal structure of the VRC01-class antibody 7A03 derived from GT1.1 vaccination
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2024-12-13
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mj9: Condensing wing of FASN with phosphopantetheine-modified partial ACP
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2 Å
Deposited: 2024-12-14
Authors: Choi, W., Li, C., Chen, Y., Wang, Y., Cheng, Y.
PDB entry 9mja: PARP1 ART in complex with HPF1 and EB47
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-12-14
Authors: Sverzhinsky, A., Pascal, J.M.
PDB entry 9mjb: Product-Bound mannosyltransferase PimE in complex with Fab
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; Mycobacteroides abscessus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-12-14
Authors: Liu, Y., Mancia, F.
PDB entry 9mjc: Crystal structure of the VRC01-class antibody 4D01 derived from GT1.1 vaccination
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-12-14
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mjd: Crystal structure of the VRC01-class antibody 3G08
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2024-12-14
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mje: The 200-K crystal structure of CYP199A4 bound to 3-methylaminobenzoic acid (dataset 3, increasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-12-14
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9mjf: The 150-K crystal structure of CYP199A4 bound to 4-methoxybenzoic acid (dataset 2, increasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-12-15
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9mjg: Crystal structure of HAT1 in complex with XS380871
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-12-15
Authors: Zeng, H., Li, F., Wang, X., Sun, J., Dong, A., Peng, H., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9mji: Crystal structure of the VRC01-class antibody 9C09 derived from GT1.1 vaccination
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-12-15
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mjj: The 200-K crystal structure of CYP199A4 bound to 4-methoxybenzoic acid (dataset 3, increasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.391 Å
Deposited: 2024-12-15
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9mjk: The 300-K crystal structure of CYP199A4 bound to 4-methoxybenzoic acid (dataset 4, increasing temperature series)
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.496 Å
Deposited: 2024-12-16
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 9mjl: SOS1 IN COMPLEX WITH AN INHIBITOR
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2024-12-16
Authors: Bell, J.A.
PDB entry 9mjm: SOS1 IN COMPLEX WITH AN INHIBITOR
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2024-12-16
Authors: Bell, J.A.
PDB entry 9mjn: Near complete virion structure of bacteriophage PhiTE
Classification: VIRUS
Source organism: Pectobacterium phage phiTE
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.7 Å
Deposited: 2024-12-16
Authors: Hodgkinson-Bean, J., Ayala, R.
PDB entry 9mjp: Crystal structure of Neisseria meningitidis ClpP protease complex with boronate compound BC8a
Classification: HYDROLASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-12-16
Authors: Mabanglo, M.F., Houry, W.A.
PDB entry 9mjq: Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (inosine bound)
Classification: TRANSFERASE
Source organism: Trichomonas vaginalis G3
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-12-16
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9mjs: Crystal structure of WRN helicase with bound AMPPNP
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mjt: Crystal structure of apo WRN helicase in Form D
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mju: Crystal structure of WRN helicase with allosteric fragment 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.579 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mjv: Crystal structure of WRN helicase with bound allosteric fragment 2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mjw: Crystal structure of WRN helicase with bound allosteric fragment 3.
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mjx: Crystal structure of WRN helicase with bound allosteric fragment 4
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mjy: Crystal structure of WRN helicase with bound allosteric compound 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mjz: Crystal structure of WRN helicase with bound allosteric compound 3
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mk0: Crystal structure of WRN helicase with bound allosteric compound 5
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mk1: Crystal structure of WRN helicase with bound compound 6
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2024-12-16
Authors: Palte, R.L., Koglin, M., Maskos, K., Tauchert, M.
PDB entry 9mk2: Crystal structure of Neisseria meningitidis ClpP protease complex with noncovalent activator, ACP1-01
Classification: HYDROLASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-12-16
Authors: Mabanglo, M.F., Houry, W.A.
PDB entry 9mk3: Engineered AsCas12a (M537R, F870L)
Classification: SPLICING/DNA/RNA
Source organism: Acidaminococcus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.698 Å
Deposited: 2024-12-16
Authors: Dementiev, A., White, A., Olland, A.M., Suto, R.K.
PDB entry 9mk4: Crystal structure of the VRC01-class antibody 12A01 derived from GT1.1 vaccination
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-12-16
Authors: Agrawal, S., Wilson, I.A.
PDB entry 9mk5: Crystal structure of Neisseria meningitidis ClpP protease complex with small molecule activator, Dioctatin
Classification: HYDROLASE
Source organism: Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-16
Authors: Mabanglo, M.F., Houry, W.A.
PDB entry 9mk7: Crystal structure of the WDR domain of WDR91 in complex with DR3634
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2024-12-16
Authors: Zeng, H., Ahmad, H., Dong, A., Seitova, A., Owen, D., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
PDB entry 9mk9: Structure of the IFIT2-IFIT3 heterodimer from Mus musculus
Classification: ANTIVIRAL PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-12-16
Authors: Glasner, D.R., Todd, C., Cook, B.D., DUrso, A., Khosla, S., Estrada, E., Wagner, J., Bartels, M.D., Ford, P., Prych, J., Hatch, K., Yee, B.A., Ego, K.M., Liang, Q., Holland, S.R., Case, J.B., Corbett, K.D., Diamond, M.S., Yeo, G.W., Herzik Jr., M.A., Van Nostrand, E.L., Daugherty, M.D.
PDB entry 9mka: Gallid alphaherpesvirus-1 large tegument protein NLS 1 in complex with Importin alpha
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-12-16
Authors: Nath, B.K., Swarbrick, C.M.D., Sarker, S., Forwood, J.K.
PDB entry 9mkb: Structure of the bacteriophage T4 portal-neck-tail complex
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T4
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2024-12-17
Authors: Fokine, A., Zhu, J., Klose, T., Vago, F., Arnaud, C., Wang, Z., Khare, B., Rossmann, M.G., Chen, Z., Sun, L., Fang, Q., Kuhn, R., Rao, V.B.
PDB entry 9mkc: Crystal structure of MALT1 in complex with an allosteric inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-12-17
Authors: Bell, J.A.
PDB entry 9mkd: Crystal structure of MALT1 in complex with an allosteric inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2024-12-17
Authors: Bell, J.A.
PDB entry 9mke: Crystal structure of MALT1 in complex with an allosteric inhibitor
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-12-17
Authors: Bell, J.A.
PDB entry 9mkf: Rat TRPV2 bound to AV2-1 agonist
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-12-17
Authors: Rocereta, J.A., Pumroy, R.A., Moiseenkova-Bell, V.Y.
PDB entry 9mkj: Fe-MAHF-9 A8S Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2024-12-17
Authors: Richardson-Matthews, R.M.
PDB entry 9mkk: Structure of arbekacin bound Escherichia coli 70S ribosome
Classification: RIBOSOME/INHIBITOR,ANTIBIOTIC
Source organism: Escherichia coli; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-12-17
Authors: Majumdar, S., Parajuli, N.P., Ge, X., Emmerich, A., Sanyal, S.
PDB entry 9mkl: canavanyl-tRNAArg deacylase (CtdA)
Classification: RNA BINDING PROTEIN
Source organism: Salmonella enterica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2024-12-17
Authors: Page, R., Peti, W., Shirakawa, K.
PDB entry 9mkn: Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Respiratory syncytial virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-12-17
Authors: Johnson, N.V., McLellan, J.S.
PDB entry 9mko: 4D4 TCR bound to R-phycoerythrin
Classification: IMMUNE SYSTEM
Source organism: Ceramium secundatum; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-12-17
Authors: Rashleigh, L., Gully, B.S., Rossjohn, J.
PDB entry 9mkp: CAEV CA Pentamer Assembled via Liposome Templating
Classification: VIRAL PROTEIN
Source organism: Caprine arthritis encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-12-18
Authors: Arizaga, F., Freniere, C., Xiong, Y.
PDB entry 9mkq: MVV CA Pentamer assembled via liposome templating
Classification: VIRAL PROTEIN
Source organism: Visna-maedi virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-12-18
Authors: Arizaga, F., Freniere, C., Xiong, Y.
PDB entry 9mkr: CAEV CA Hexamer Assembled via Liposome Templating
Classification: VIRAL PROTEIN
Source organism: Caprine arthritis encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-12-18
Authors: Arizaga, F., Freniere, C., Xiong, Y.
PDB entry 9mks: MVV CA Hexamer Assembled via Liposome Templating
Classification: VIRAL PROTEIN
Source organism: Visna-maedi virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Deposited: 2024-12-18
Authors: Arizaga, F., Freniere, C., Xiong, Y.
PDB entry 9mkt: FnoCas12a bridge helix variant state 1
Classification: DNA BINDING PROTEIN
Source organism: Francisella tularensis subsp. novicida U112; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-12-18
Authors: Ganguly, C., Thomas, L.M., Aribam, S.D., Martin, L., Rajan, R.
PDB entry 9mku: FnoCas12a bridge helix variant state 2
Classification: DNA BINDING PROTEIN
Source organism: Francisella tularensis subsp. novicida U112; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-12-18
Authors: Ganguly, C., Thomas, L.M., Aribam, S.D., Martin, L., Rajan, R.
PDB entry 9mkv: FnoCas12a bridge helix variant state 3
Classification: DNA BINDING PROTEIN
Source organism: Francisella tularensis subsp. novicida U112; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Deposited: 2024-12-18
Authors: Ganguly, C., Thomas, L.M., Aribam, S.D., Martin, L., Rajan, R.
PDB entry 9mkw: FnoCas12a bridge helix variant state 4a
Classification: DNA BINDING PROTEIN
Source organism: Francisella tularensis subsp. novicida; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2024-12-18
Authors: Ganguly, C., Thomas, L.M., Aribam, S.D., Martin, L., Rajan, R.
PDB entry 9mkx: FnoCas12a bridge helix variant state 4b
Classification: DNA BINDING PROTEIN
Source organism: Francisella tularensis subsp. novicida; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2024-12-18
Authors: Ganguly, C., Thomas, L.M., Aribam, S.D., Martin, L., Rajan, R.
PDB entry 9mky: Structure of acid-sensing ion channel 5 with calcium
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-12-18
Authors: Freitas, M.M., Gouaux, E.
PDB entry 9mkz: Structure of acid-sensing ion channel 5 without calcium, open
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2024-12-18
Authors: Freitas, M.M., Gouaux, E.
PDB entry 9ml0: Co-MAHF-9 A8Q Hydrated Metal Alpha-Helix Framework
Classification: DE NOVO PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 0.92 Å
Deposited: 2024-12-18
Authors: Richardson-Matthews, R.M.
PDB entry 9ml1: D24.1M01 Fab bound to HPV16 L1 pentamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-12-18
Authors: Hurlburt, N.K., Singh, S., Rodarte, J.V., Pancera, M.
PDB entry 9ml2: A7M08 Fab bound to HPV16 L1 pentamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-12-18
Authors: Hurlburt, N.K., Singh, S., Rodarte, J.V., Pancera, M.
PDB entry 9ml3: B25M05 Fab bound to HPV16 L1 pentamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human papillomavirus 16
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-12-18
Authors: Hurlburt, N.K., Singh, S., Rodarte, J.V., Pancera, M.
PDB entry 9ml4: Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-A10 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-12-18
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9ml5: Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-B8 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-12-18
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9ml6: Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-C9 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-12-18
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9ml7: Structure of the SARS-CoV-2 Spike 6P in complex with the rabbit M8b-C10 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-12-18
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9ml8: Crystal structure of the SARS-CoV-2 RBD in complex with the rabbit M8b-B1 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-12-18
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9ml9: Crystal structure of the SARS-CoV-2 RBD in complex with the rabbit M8b-C9 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Oryctolagus cuniculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2024-12-18
Authors: Fan, C., Bjorkman, P.J.
PDB entry 9mla: Pre-fusion HERV-K Envelope Protein Trimer Ectodomain in complex with Kenv-6 Fab
Classification: VIRAL PROTEIN
Source organism: Enterobacteria phage T4; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.24 Å
Deposited: 2024-12-18
Authors: Shek, J., Sun, C., Hastie, K., Saphire, E.O.
PDB entry 9mlc: Pol II-DSIF-SPT6-PAF1c-TFIIS-IWS1-ELOF1-LEDGF-nucleosome activated elongation complex Composite map T
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2024-12-19
Authors: Syau, D., Farnung, L.
PDB entry 9mlf: TUBULIN-RB3_SLD IN COMPLEX WITH COMPOUND QW-4-183-llb
Classification: CELL CYCLE,STRUCTURAL PROTEIN/INHIBITOR
Source organism: Rattus norvegicus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-12-19
Authors: Miller, D.J.
PDB entry 9mlg: Xenorhabdus nematophilus XptA2 State 2, 1181insYWK1183, D1182T mutant
Classification: TOXIN
Source organism: Xenorhabdus nematophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å
Deposited: 2024-12-19
Authors: Aller, S.G., Martin, C.L.
PDB entry 9mlh: Xenorhabdus nematophilus XptA2, wild type State 2
Classification: TOXIN
Source organism: Xenorhabdus nematophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-12-19
Authors: Aller, S.G., Martin, C.L.
PDB entry 9mli: Xenorhabdus nematophilus XptA2 RBD C Chimera
Classification: TOXIN
Source organism: Xenorhabdus nematophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-12-19
Authors: Aller, S.G., Martin, C.L.
PDB entry 9mlj: X-ray structure of SARS-CoV-2 main protease covalently bound to compound GRL-050-23 at 1.6 A
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-12-19
Authors: Beechboard, S.N., Mesecar, A.D., Ghosh, A.K., Center for Structural Biology of Infectious Diseases (CSBID)
PDB entry 9mlk: Post-fusion HERV-K Envelope Protein in complex with Kenv-4 Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2024-12-19
Authors: Sun, C., Shek, J., Hastie, K., Saphire, E.O.
PDB entry 9mll: GammaH2AX containing nucleosomes, Parallel stack
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-12-19
Authors: Panigrahi, R., Edwards, R., Glover, J.N.M.
PDB entry 9mlm: Crystal structure of dihydrofolate reductase (DHFR) from the filarial nematode W. bancrofti in complex with NADPH and [2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxyphenyl]acetic acid (TSD10 or OED)
Classification: OXIDOREDUCTASE
Source organism: Wuchereria bancrofti
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2024-12-19
Authors: Frey, K.M., Goodey, N.M., Kwarteng, S., Wilhelm, J.
PDB entry 9mln: GammaH2AX containing nucleosome, Canonical (Class 1)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-12-19
Authors: Panigrahi, R., Edwards, R., Glover, J.N.M.
PDB entry 9mlo: Drimenol Synthase - Farnesyl Thiol Complex
Classification: LYASE
Source organism: Aquimarina spongiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2024-12-19
Authors: Osika, K.R., Gaynes, M.N., Christianson, D.W.
PDB entry 9mlp: Crystal structure of VgrS from Salmonella Typhimurium
Classification: PROTEIN TRANSPORT
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-12-19
Authors: Sachar, K., Van Schepdael, M., Winters, K.L., Prehna, G.
PDB entry 9mlr: GammaH2AX containing nucleosome, Half-wrapped (Class 2)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-12-19
Authors: Panigrahi, R., Edwards, R., Glover, J.N.M.
PDB entry 9mls: GammaH2AX containing nucleosome, Extended (Class 3)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-12-19
Authors: Panigrahi, R., Edwards, R., Glover, J.N.M.
PDB entry 9mlt: Crystal structure of dihydrofolate reductase (DHFR) from the filarial nematode W. bancrofti in complex with NADPH and [2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanophenyl]acetic acid (TSD25 or OFD)
Classification: OXIDOREDUCTASE
Source organism: Wuchereria bancrofti
Experimental method: X-RAY DIFFRACTION
Resolution: 2.105 Å
Deposited: 2024-12-19
Authors: Frey, K.M., Goodey, N.M., Kwarteng, S., Wilhelm, J.
PDB entry 9mlu: FbaA with Factor H 6-7 domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-12-19
Authors: Kumar, A., Ghosh, P.
PDB entry 9mlv: Structure of acid-sensing ion channel 5 without calcium, closed
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-12-19
Authors: Freitas, M.M., Gouaux, E.
PDB entry 9mlw: Crosslinked complex of ketosynthase FabB mutant FabBG107M and acyl carrier protein AcpP from E.coli with C8 crosslinker
Classification: BIOSYNTHETIC PROTEIN
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2024-12-19
Authors: Jiang, Z., Sankaran, B., Burkart, M.D., Fox, J.M.
PDB entry 9mly: Azotobacter vinelandii Reduced MoFeP (C1 symmetry) obtained using the SPT Labtech chameleon of 5 mM sodium dithionite under Al's oil
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.33 Å
Deposited: 2024-12-19
Authors: Cook, B.D., Narehood, S.M., McGuire, K.L., Li, Y., Tezcan, F.A., Herzik, M.A.
PDB entry 9mlz: Azotobacter vinelandii Reduced MoFeP (C2 symmetry) obtained using the SPT Labtech chameleon of 5 mM sodium dithionite under Al's oil
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2024-12-19
Authors: Cook, B.D., Narehood, S.M., McGuire, K.L., Li, Y., Tezcan, F.A., Herzik, M.A.
PDB entry 9mm0: Azotobacter vinelandii Reduced MoFeP (C1 symmetry) obtained using the SPT Labtech chameleon of 60 mM sodium dithionite under Al's oil
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Deposited: 2024-12-19
Authors: Cook, B.D., Narehood, S.M., McGuire, K.L., Li, Y., Tezcan, F.A., Herzik, M.A.
PDB entry 9mm1: Azotobacter vinelandii Reduced MoFeP (C2 symmetry) obtained using the SPT Labtech chameleon of 60 mM sodium dithionite under Al's oil
Classification: METAL BINDING PROTEIN
Source organism: Azotobacter vinelandii
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.08 Å
Deposited: 2024-12-19
Authors: Cook, B.D., Narehood, S.M., McGuire, K.L., Li, Y., Tezcan, F.A., Herzik, M.A.
PDB entry 9mm2: Crystal structure of bacterial pectin methylesterase PmeC5 from B. fibrisolvens D1T
Classification: SUGAR BINDING PROTEIN
Source organism: Butyrivibrio fibrisolvens DSM 3071
Experimental method: X-RAY DIFFRACTION
Resolution: 1.33 Å
Deposited: 2024-12-19
Authors: Carbone, V., Reilly, K., Sang, C., Schofield, L., Ronimus, R., Attwood, G.T., Palevich, N.
PDB entry 9mm3: [T:Ag+/Hg2+:T--(pH9.5-pH8; 4s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 9.5 and soaked in pH 8 for 4s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.43 Å
Deposited: 2024-12-19
Authors: Lu, B., Vecchioni, S.
PDB entry 9mm4: [T:Ag+/Hg2+:T--(pH9.5-pH8; 7s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 9.5 and soaked in pH 8 for 7s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 6.5 Å
Deposited: 2024-12-19
Authors: Lu, B., Vecchioni, S.
PDB entry 9mm5: CGRP Receptor in complex with dC2_049
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2024-12-19
Authors: Cao, J., Cary, B.P., Belousoff, M.J., Wootten, D.L.
PDB entry 9mm6: ROOLefa-octamer-wild type
Classification: RNA
Source organism: Enterococcus faecalis JH1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2024-12-20
Authors: Ling, X.B., Fang, W.W., Ma, J.B., Korostelev, A.A.
PDB entry 9mm7: [T:Ag+/Hg2+:T--(pH8-pH9.5; 4s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8 and soaked in pH 9.5 for 4s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.88 Å
Deposited: 2024-12-20
Authors: Lu, B., Vecchioni, S.
PDB entry 9mm8: [T:Ag+/Hg2+:T--(pH8-pH9.5; 16s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8 and soaked in pH 9.5 for 16s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.61 Å
Deposited: 2024-12-20
Authors: Lu, B., Vecchioni, S.
PDB entry 9mm9: [T:Ag+/Hg2+:T--(pH8-pH9.5; 35s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8 and soaked in pH 9.5 for 35s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.5 Å
Deposited: 2024-12-20
Authors: Lu, B., Vecchioni, S.
PDB entry 9mma: [T:Ag+/Hg2+:T--(pH9.5-pH11; 20s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 9.5 and soaked in pH 11 for 20s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.03 Å
Deposited: 2024-12-20
Authors: Lu, B., Vecchioni, S.
PDB entry 9mmb: [T:Ag+/Hg2+:T--(pH9.5-pH11; 40s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 9.5 and soaked in pH 11 for 40s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.72 Å
Deposited: 2024-12-20
Authors: Lu, B., Vecchioni, S.
PDB entry 9mmc: [T:Ag+/Hg2+:T--(pH9.5-pH11; 7s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 9.5 and soaked in pH 11 with Ag+ and Hg2+ for 7s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 4.7 Å
Deposited: 2024-12-20
Authors: Lu, B., Vecchioni, S.
PDB entry 9mmd: [T:Ag+/Hg2+:T--(pH9.5-pH11; 21s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 9.5 and soaked in pH 11 with Ag+ and Hg2+ for 21s
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 5.03 Å
Deposited: 2024-12-20
Authors: Lu, B., Vecchioni, S.
PDB entry 9mme: ROOLfirm-octamer-wild type
Classification: RNA
Source organism: Firmicutes bacterium CAG:227
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2024-12-20
Authors: Ling, X.B., Ma, J.B., Fang, W.W., Korostelev, A.A.
PDB entry 9mmf: First structure of Five-tetrad G-Quadruplex
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-12-20
Authors: Eyiolowope, J., Xing, E.R., Yatsunyk, L.A.
PDB entry 9mmg: ROOLefa-monomer-alone
Classification: RNA
Source organism: Enterococcus faecalis JH1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Deposited: 2024-12-20
Authors: Ling, X.B., Fang, W.W., Ma, J.B., Korostelev, A.A.
PDB entry 9mmh: HFP (histidine family phosphatase) that catalyzes essential dephosphorylation for riboflavin biosynthesis
Classification: HYDROLASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2024-12-20
Authors: Hoffpauir, Z.A., Meneely, K.M., Lamb, A.L.
PDB entry 9mmi: Myo-inositol-1(or 4)-monophosphatase that can perform essential dephosphorylation step to facilitate riboflavin biosynthesis
Classification: HYDROLASE
Source organism: Aquifex aeolicus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2024-12-20
Authors: Hoffpauir, Z.A., Meneely, K.M., Lamb, A.L.
PDB entry 9mmj: Crystal Structure of 19b Fab bound to the third variable (V3) loop peptide from the HIV-1 JR-FL envelope (Env) glycoprotein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.78 Å
Deposited: 2024-12-20
Authors: Fetics, S., Acharya, P.
PDB entry 9mmk: H2AX containing nucleosome, Canonical (Class 1)
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-12-20
Authors: Panigrahi, R., Edwards, R., Glover, J.N.M.