LiteFold/PDB huggingface dataset:
PDB entry 9v8e: PPARgamma ligand-binding domain in complex with PG11
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-05-29
Authors: Sigal, M., Okada, C., Katoh, T., Suga, H., Sengoku, T.
PDB entry 9v8f: PPARgamma ligand-binding domain in complex with PG14
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-05-29
Authors: Sigal, M., Okada, C., Katoh, T., Suga, H., Sengoku, T.
PDB entry 9v8g: PPARgamma ligand-binding domain in complex with PG08-NL
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-05-29
Authors: Sigal, M., Okada, C., Katoh, T., Suga, H., Sengoku, T.
PDB entry 9v8h: PPARgamma ligand-binding domain in complex with PG08-NL and rosiglitazone
Classification: TRANSCRIPTION
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2025-05-29
Authors: Sigal, M., Okada, C., Katoh, T., Suga, H., Sengoku, T.
PDB entry 9v8i: Crystal structure for YxiD-YxxD toxin-immunity protein complex from Bacillus subtilis 6633.
Classification: TOXIN
Source organism: Bacillus spizizenii ATCC 6633 = JCM 2499
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-05-29
Authors: Thakur, K.G., Rohilla, R.
PDB entry 9v8w: membrane protein S6A8 with RGX
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-05-30
Authors: Zhang, S.S.
PDB entry 9v8x: membrane protein S6A8 with Crea
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-05-30
Authors: Zhang, S.S.
PDB entry 9v8y: membrane protein S6A8 apo
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-05-30
Authors: Zhang, S.S.
PDB entry 9v90: Crystal structure of the PDZ tandem of syntenin in complex with PDZ2 inhibitor
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-05-30
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9v91: Cryo-EM structure of renal amyloid fibril from an immunoglobulin light chain amyloidosis patient in polymorph B
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-05-30
Authors: Zhao, K., Yu, C.Y., Ma, Y.Y., Huang, H.
PDB entry 9v92: Crystal structure of the Pin1 and Frag61 complex
Classification: ISOMERASE
Source organism: Escherichia coli BL21(DE3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-05-30
Authors: Xiao, Q.J.
PDB entry 9v93: Structure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNA in monomeric state.
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Verrucomicrobiota bacterium; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.81 Å
Deposited: 2025-05-30
Authors: Wu, S.
PDB entry 9v9c: Cryo-EM structure of human TNFR1 DD filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-05-30
Authors: Zhao, K., Liu, J.P., Liu, C., Yuan, J.Y.
PDB entry 9v9e: Cryo-EM structure of human RIPK1 DD filament
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-05-30
Authors: Zhao, K., Liu, J.P., Liu, C., Yuan, J.Y.
PDB entry 9v9g: Structure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNA in monomeric state.
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Verrucomicrobiota bacterium; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2025-05-30
Authors: Wu, S.
PDB entry 9v9i: The transition-state structure of the Argonaute protein from a Verrucomicrobia bacterium in complex with guide DNA and target RNA.
Classification: RNA BINDING PROTEIN/DNA/RNA
Source organism: Verrucomicrobiota bacterium; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-05-30
Authors: Wu, S.
PDB entry 9v9n: Cryo-EM structure of KICSTOR CCC complex (state 5)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-06-01
Authors: Su, M.-Y.
PDB entry 9v9o: Crystal structure of CDC48A-N domain in complex with PUX5 SHP box motif and UBX domain
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-06-01
Authors: Arold, S.T., Zhang, J.
PDB entry 9va0: Solution NMR structures of hTERT DNA G-quadruplexes (G4s) in complex with small molecule CPT-11
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2025-06-02
Authors: Zeng, L.
PDB entry 9va3: Solution NMR structures of hTERT DNA G-quadruplexes (G4s) in complex with small molecule ZBH-01
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2025-06-02
Authors: Zeng, L.
PDB entry 9va6: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2025-06-02
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9va7: Crystal structure of legionella effector Lem17 in complex with IP6
Classification: TRANSFERASE
Source organism: Legionella pneumophila
Experimental method: X-RAY DIFFRACTION
Resolution: 2.234 Å
Deposited: 2025-06-02
Authors: Chen, T.T., Zheng, S.R., Ouyang, S.Y.
PDB entry 9va9: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-06-03
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9vac: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2025-06-03
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9vad: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2025-06-03
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9vaf: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-06-03
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9vai: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2025-06-03
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9vak: Carbohydrate-binding module 32 of LnbB from Bifidobacterium bifidum, LNB complex
Classification: SUGAR BINDING PROTEIN
Source organism: Bifidobacterium bifidum JCM 1254
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-03
Authors: Zhang, X., Kashima, T., Fushinobu, S.
PDB entry 9val: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-06-03
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9van: Cryo-EM structure of human full length KICSTOR complex (state 2)
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-03
Authors: Su, M.-Y.
PDB entry 9vao: Crystal structure of Papain-like protease (PLpro) from SARS-CoV-2
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-06-03
Authors: Arya, R., Ganesh, J., Prashar, V., Kumar, M.
PDB entry 9vap: Cryo-EM structure of formate dehydrogenase from Shewanella oneidensis MR-1 (SoFdhAB)
Classification: OXIDOREDUCTASE
Source organism: Shewanella oneidensis MR-1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2025-06-03
Authors: Liu, W., Zhang, L.
PDB entry 9var: Crystal structure of Cu-bound artificial metalloprotein incorporating a TP ligand
Classification: METAL BINDING PROTEIN
Source organism: Methanothermobacter thermautotrophicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.862 Å
Deposited: 2025-06-04
Authors: Lee, Y.J., Song, W.J.
PDB entry 9vb9: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2025-06-04
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9vbb: Crystal structure of the PDZ tandem of syntenin
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-06-04
Authors: Ando, N., Hanazono, Y., Ito, N., Hiroaki, H.
PDB entry 9vbd: Cryo-EM structure of CARD1 ectodomain
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana; Escherichia coli K12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-06-04
Authors: Fukuda, Y., Ishihama, N., Laohavisit, A.
PDB entry 9vbg: Cryo-EM structure of human PLD3 apo form
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-06-04
Authors: Hirano, Y., Ezaki, W., Ohto, U., Shimizu, T.
PDB entry 9vbh: Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-06-04
Authors: Hirano, Y., Ezaki, W., Ohto, U., Shimizu, T.
PDB entry 9vbi: Cryo-EM structure of PLD3 bound to ssDNA (poly(A))
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2025-06-04
Authors: Hirano, Y., Ezaki, W., Ohto, U., Shimizu, T.
PDB entry 9vbj: Cryo-EM structure of human PLD4 apo form
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-06-04
Authors: Hirano, Y., Ezaki, W., Ohto, U., Shimizu, T.
PDB entry 9vbk: Cryo-EM structure of human PLD4 bound to ssDNA (poly(T))
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-06-04
Authors: Hirano, Y., Ezaki, W., Ohto, U., Shimizu, T.
PDB entry 9vbl: Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (monomer form)
Classification: TRANSFERASE
Source organism: Dorea longicatena
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Deposited: 2025-06-04
Authors: Takai, M., Tanino, H., Shobu, K., Fukuda, Y., Inoue, T.
PDB entry 9vbm: Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (dimer form)
Classification: TRANSFERASE
Source organism: Dorea longicatena
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-06-04
Authors: Takai, M., Tanino, H., Shobu, K., Fukuda, Y., Inoue, T.
PDB entry 9vbo: Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:2:2
Classification: TRANSFERASE
Source organism: Streptococcus macacae NCTC 11558
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.16 Å
Deposited: 2025-06-04
Authors: Luo, Z., Shen, Z., Liao, G., Tang, X., Pan, X.
PDB entry 9vbs: Crystal structure of the coiled-coil of ALLO-1a
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 2.401 Å
Deposited: 2025-06-04
Authors: Noda, N.N.
PDB entry 9vbt: Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:4:4
Classification: TRANSFERASE
Source organism: Streptococcus macacae NCTC 11558
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.32 Å
Deposited: 2025-06-04
Authors: Luo, Z., Shen, Z., Liao, G., Tang, X., Pan, X.
PDB entry 9vbv: Cryo-EM structure of a CARD1 ectodomain H197A/H199A/H222A mutant
Classification: SIGNALING PROTEIN
Source organism: Arabidopsis thaliana; Escherichia coli K12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.61 Å
Deposited: 2025-06-05
Authors: Fukuda, Y., Ishihama, N., Laohavisit, A.
PDB entry 9vbw: Lectin FRIL from Lablab purpureus complexed to Lewis X tetrasaccharide
Classification: PLANT PROTEIN
Source organism: Lablab purpureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2025-06-05
Authors: Nguyen, V.H.T., Chen, T.H., Chen, X., Liu, Y.M., Ma, C.
PDB entry 9vbx: Lectin FRIL from Lablab purpureus complexed to Lewis X tetrasaccharide
Classification: PLANT PROTEIN
Source organism: Lablab purpureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-06-05
Authors: Nguyen, V.H.T., Chen, X., Liu, Y.M., Ma, C.
PDB entry 9vby: Lectin FRIL from Lablab purpureus with self glycan
Classification: PLANT PROTEIN
Source organism: Lablab purpureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2025-06-05
Authors: Nguyen, V.H.T., Liu, Y.M., Chen, X., Ma, C.
PDB entry 9vbz: Lectin FRIL from Lablab purpureus complexed to oligomannose
Classification: PLANT PROTEIN
Source organism: Lablab purpureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.56 Å
Deposited: 2025-06-05
Authors: Nguyen, V.H.T., Liu, Y.M., Ma, C.
PDB entry 9vc0: Lectin FRIL from Lablab purpureus complexed to oligomannose
Classification: PLANT PROTEIN
Source organism: Lablab purpureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.48 Å
Deposited: 2025-06-05
Authors: Nguyen, V.H.T., Liu, Y.M., Ma, C.
PDB entry 9vc6: Cryo-EM structure of Bacillus halodurans ComEC
Classification: MEMBRANE PROTEIN
Source organism: Halalkalibacterium halodurans C-125
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.71 Å
Deposited: 2025-06-05
Authors: Hirano, H., Nureki, O.
PDB entry 9vc7: Structural insights into the tumor suppressor ZMYND11 reveal diverse recognition mechanisms
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2025-06-05
Authors: Bai, X., Chen, Z.
PDB entry 9vc9: Cryo-EM structure of Shewanella decolorationis ComEC
Classification: MEMBRANE PROTEIN
Source organism: Shewanella decolorationis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-06-05
Authors: Hirano, H., Nureki, O.
PDB entry 9vca: Binding site between C-reactive protein and c2cc monoclonal antibody
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus albula
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-06-05
Authors: Moiseenko, A.V., Kalikin, A.V.
PDB entry 9vcb: Cryo-EM structure of Shewanella putrefaciens ComEC in complex with ssDNA
Classification: MEMBRANE PROTEIN
Source organism: Shewanella putrefaciens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2025-06-05
Authors: Hirano, H., Nureki, O.
PDB entry 9vcd: N-terminal dimeric C2H2-domain of Drosophila melanogaster IMZF protein
Classification: METAL BINDING PROTEIN
Source organism: Drosophila melanogaster
Experimental method: SOLUTION NMR
Deposited: 2025-06-05
Authors: Dukhalin, S.D., Mariasina, S.S., Polshakov, V.I., Bocharov, E.V., Balagurov, K.I.
PDB entry 9vce: Crystal structure of Escherichia coli tryptophanyl-tRNA synthetase in complex with 71g
Classification: LIGASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2025-06-05
Authors: Xia, K., Peng, X., Chen, B., Zhou, H.
PDB entry 9vcf: Cryo-EM structure of Shewanella putrefaciens ComEC in complex with dsDNA
Classification: MEMBRANE PROTEIN
Source organism: Shewanella putrefaciens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-06-05
Authors: Hirano, H., Nureki, O.
PDB entry 9vci: Crystal structure of Escherichia coli tryptophanyl-tRNA synthetase in complex with an inhibitor
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2025-06-06
Authors: Xia, K., Peng, X., Xiao, L., Huang, Q., Gu, Q., Chen, B., Zhou, H.
PDB entry 9vck: Cryo-EM structure of SARS-CoV-2 nsp10/nsp14:RNA:SMP complex
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.22 Å
Deposited: 2025-06-06
Authors: Wang, J., Lou, Z., Liu, D.
PDB entry 9vcl: Cryo-EM structure of SARS-CoV-2 nsp10/nsp14:RNA:ATMP complex
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-06-06
Authors: Wang, J., Lou, Z., Liu, D.
PDB entry 9vcs: Cryo-EM structure of semi-closed state of Botulinum neurotoxin serotype A at pH 7.4
Classification: TOXIN
Source organism: Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-06-06
Authors: Zerang, Z., Liu, Z., He, J., Wang, X., Qi, F., Lei, D., Zhi, D., Wang, D.
PDB entry 9vd2: Crystal Structure of kelch domain of human KEAP1 in complex with CH7286675
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.699 Å
Deposited: 2025-06-07
Authors: Kawauchi, H., Fukami, T.A., Kimbara, A., Miyagi, T., Yasui, Y., Hoshino, M., Irie, M., Torizawa, T.
PDB entry 9vd8: Structure of a truncated loopA mutant from the human gut flora K. grimontii Apg in complex with glucose
Classification: HYDROLASE
Source organism: Klebsiella grimontii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-06-07
Authors: Zhou, J.H., Huang, J.Y.
PDB entry 9vd9: Cryo-EM structure of the human DSS1-INTAC-PEC complex
Classification: TRANSCRIPTION
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å
Deposited: 2025-06-07
Authors: Zheng, H., Xu, Y., Cheng, J.
PDB entry 9vdc: Cryo-EM structure of the aspartate:alanine antiporter AspT WT
Classification: TRANSPORT PROTEIN
Source organism: Tetragenococcus halophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-08
Authors: Nanatani, K., Kanno, R., Kawabata, T., Watanabe, S., Hidaka, M., Yamanaka, T., Toda, K., Fujiki, T., Kunii, K., Miyamoto, A., Chiba, F., Ogasawara, S., Murata, T., Humbel, B.M., Inaba, K., Mitsuoka, K., Guan, L., Abe, K., Yamamoto, M., Koshiba, S.
PDB entry 9vdg: Structure of a truncated loopB mutant from the human gut flora K. grimontii Apg
Classification: HYDROLASE
Source organism: Klebsiella grimontii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67 Å
Deposited: 2025-06-08
Authors: Zhou, J.H., Huang, J.Y.
PDB entry 9vdi: Crystal structure of the recombinant A1-antitrypsin F51L/M351V/M358V triple mutant
Classification: RECOMBINATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-06-08
Authors: Wang, B., Lan, T.J., Lin, M., Wang, Y.J., Li, L.F., Lin, X.L.
PDB entry 9vdj: Serial synchrotron crystallography structure of a ba3-type cytochrome c oxidase using a goniometer-compatible chip-based platform
Classification: MEMBRANE PROTEIN
Source organism: Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-08
Authors: Kabbinale, A., Branden, G., Neutze, R., Ghosh, S.
PDB entry 9vdk: Cryo-EM structure of human ATP9A in BeF-bound E2P state open form
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.18 Å
Deposited: 2025-06-09
Authors: Abe, K.
PDB entry 9vdl: Cryo-EM structure of human ATP9A in BeF-bound E2P state closed form
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.31 Å
Deposited: 2025-06-09
Authors: Abe, K.
PDB entry 9vdm: Cryo-EM structure of human ATP9A (AMPPCP) E2P state open form
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2025-06-09
Authors: Abe, K.
PDB entry 9vdn: Cryo-EM structure of human ATP9A (AlF) E2P state open form
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2025-06-09
Authors: Abe, K.
PDB entry 9vdo: Cryo-EM structure of the substrate bound DRT4
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.93 Å
Deposited: 2025-06-09
Authors: Wang, Y., Deng, Z.
PDB entry 9vdp: Cryo-EM structure of the hexameric DRT4
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Deposited: 2025-06-09
Authors: Wang, Y., Deng, Z.
PDB entry 9vdv: Cryo-EM structure of the catalytically inactive DRT4
Classification: DNA BINDING PROTEIN/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-09
Authors: Wang, Y., Deng, Z.
PDB entry 9vdw: Structure of truncated loopA and loopB mutants from the human gut flora K. grimontii Apg
Classification: HYDROLASE
Source organism: Klebsiella grimontii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2025-06-09
Authors: Zhou, J.H., Huang, J.Y.
PDB entry 9vdx: Serial synchrotron crystallography structure of a photosynthetic reaction center using a goniometer-compatible chip-based platform
Classification: MEMBRANE PROTEIN
Source organism: Blastochloris viridis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-06-09
Authors: Ghosh, S., Banacore, A., Neutze, R., Branden, G.
PDB entry 9vdy: hA5-6 Fab bound to SFTSV glycoprotein Gn
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe fever with thrombocytopenia syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28 Å
Deposited: 2025-06-09
Authors: Deng, Z., Kuang, W., Zhao, H.
PDB entry 9vdz: hA5-6(W30B/E45) Fab bound to SFTSV glycoprotein Gn
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe fever with thrombocytopenia syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-06-09
Authors: Deng, Z., Kuang, W., Zhao, H.
PDB entry 9ve0: hA5-6 (W30B/W53) Fab bound to SFTSV glycoprotein Gn
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe fever with thrombocytopenia syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-06-09
Authors: Deng, Z., Kuang, W., Zhao, H.
PDB entry 9ve3: The MIDN Catch-IRF4 (V2L) fusion protein
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-06-09
Authors: Ding, J., Chen, Z., Zhong, Y.
PDB entry 9ve4: The MIDN Catch-IRF4 fusion protein
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2025-06-09
Authors: Ding, J., Chen, Z., Zhong, Y.
PDB entry 9ve5: The MIDN Catch-IRF4 (V2Y) fusion protein
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2025-06-09
Authors: Ding, J., Chen, Z., Zhong, Y.
PDB entry 9ve6: The MIDN Catch-IRF4 (F6Y) fusion protein
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-06-09
Authors: Ding, J., Chen, Z., Zhong, Y.
PDB entry 9ve7: The MIDN Catch-IRF4 (A8V) fusion protein
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-06-09
Authors: Ding, J., Chen, Z., Zhong, Y.
PDB entry 9ve8: The MIDN Catch-IRF4 (A8L) fusion protein
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2025-06-09
Authors: Ding, J., Chen, Z., Zhong, Y.
PDB entry 9vea: The MIDN Catch-IRF4 (A8I) fusion protein
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2025-06-09
Authors: Ding, J., Chen, Z., Zhong, Y.
PDB entry 9veb: Cryo-EM structure of the aspartate:alanine antiporter AspT mutant L60C
Classification: TRANSPORT PROTEIN
Source organism: Tetragenococcus halophilus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.56 Å
Deposited: 2025-06-09
Authors: Nanatani, K., Kanno, R., Kawabata, T., Watanabe, S., Hidaka, M., Yamanaka, T., Toda, K., Fujiki, T., Kunii, K., Miyamoto, A., Chiba, F., Ogasawara, S., Murata, T., Humbel, B.M., Inaba, K., Mitsuoka, K., Guan, L., Abe, K., Yamamoto, M., Koshiba, S.
PDB entry 9vec: structure of human KCNQ1-KCNE1-CaM complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2025-06-09
Authors: Cui, C., Kermani, A., Cui, J., Sun, J.
PDB entry 9ved: The cryo-EM structure of mouse Piezo1-MDFI complex
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Deposited: 2025-06-09
Authors: Zhang, Y., Dai, F.
PDB entry 9vee: The cryo-EM structure of human Piezo2-MDFIC2 complex (composite map)
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-06-09
Authors: Zhang, Y., Dai, F.
PDB entry 9vef: The cryo-EM structure of human Piezo2-MDFIC complex (composite map)
Classification: MEMBRANE PROTEIN
Source organism: Aequorea victoria; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2025-06-09
Authors: Zhang, Y., Dai, F.
PDB entry 9veg: Structural basis for the assembly and translocation of the Vip1-Vip2 insecticidal binary toxin from Bacillus thuringiensis
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2025-06-09
Authors: Chen, P., Zhao, T.
PDB entry 9veh: The MIDN Catch-IRF4 (A8M) fusion protein
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-09
Authors: Ding, J., Chen, Z., Zhong, Y.
PDB entry 9vei: structure of human KCNQ1-KCNE1-CaM complex with PIP2
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-06-09
Authors: Cui, C., Kermani, A., Cui, J., Sun, J.
PDB entry 9vej: Structural basis for the assembly and translocation of the Vip1-Vip2 insecticidal binary toxin from Bacillus thuringiensis
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.4 Å
Deposited: 2025-06-09
Authors: Chen, P., Zhao, T.
PDB entry 9vek: Structural basis for the assembly and translocation of the Vip1-Vip2 insecticidal binary toxin from Bacillus thuringiensis
Classification: TOXIN
Source organism: Bacillus thuringiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-06-09
Authors: Chen, P., Zhao, T.
PDB entry 9vel: The composite cryo-EM structure of bacteriophage SPO1 capsid
Classification: VIRUS
Source organism: Bacillus phage SPO1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-06-09
Authors: Zhao, X., Wang, A., Wang, Y., Kang, Y., Shao, Q., Li, L., Zheng, Y., Hu, H., Li, X., Fan, H., Cai, C., Liu, B., Fang, Q.
PDB entry 9vem: SIRT2 structure in complex with H3K18myr peptide and native NAD: pre-catalysis state 1
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2025-06-09
Authors: Zhang, N., Hao, Q.
PDB entry 9ven: structure of human KCNQ1-CaM-PIP2 complex with bent conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-06-09
Authors: Cui, C., Kermani, A., Cui, J., Sun, J.
PDB entry 9veo: structure of human KCNQ1-CaM-PIP2 complex with straight conformation
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-06-09
Authors: Cui, C., Kermani, A., Cui, J., Sun, J.
PDB entry 9veq: Crystal structure of Keap1 in complex with a small molecule inhibitor, KMN003
Classification: PEPTIDE BINDING PROTEIN/INHIBITOR
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-06-10
Authors: Ishida, H., Osawa, M.
PDB entry 9vew: SIRT2 structure in complex with H3K18myr peptide and native NAD: pre-catalysis state 2
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2025-06-10
Authors: Zhang, N., Hao, Q.
PDB entry 9vf7: Structure of Meiothermus ruber Mrub_1259 LOV domain with N- and C-terminal alpha helices (MrLOVe)
Classification: FLUORESCENT PROTEIN
Source organism: Meiothermus ruber DSM 1279
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-06-10
Authors: Semenov, O., Nazarenko, V., Yudenko, A., Remeeva, A., Borshchevskiy, V., Yang, Y., Gushchin, I.
PDB entry 9vf8: Structure of Meiothermus ruber Mrub_1259 LOV domain (MrLOV)
Classification: FLUORESCENT PROTEIN
Source organism: Meiothermus ruber DSM 1279
Experimental method: X-RAY DIFFRACTION
Resolution: 3.352 Å
Deposited: 2025-06-10
Authors: Semenov, O., Nazarenko, V., Yudenko, A., Remeeva, A., Borshchevskiy, V., Yang, Y., Gushchin, I.
PDB entry 9vfe: Solution structure of XPC binding domain of hHR23B (apo form)
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-06-11
Authors: Xiao, T., He, D., Kelly, M.J.S., Chang, C.J.
PDB entry 9vff: Solution structure of XPC binding domain of a hHR23B variant - H274N/H323Q
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-06-11
Authors: Xiao, T., He, D., Kelly, M.J.S., Chang, C.J.
PDB entry 9vfg: Solution structure of silver bound XPC binding domain of hHR23B (holo form)
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-06-11
Authors: Xiao, T., He, D., Kelly, M.J.S., Chang, C.J.
PDB entry 9vfi: Structure of hTRPC3 solubilized with 4F peptide at 2.72 angstrom
Classification: METAL TRANSPORT
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Deposited: 2025-06-11
Authors: Chen, L., Zang, J.
PDB entry 9vfj: PSI-LHCI of Euglena gracilis strain Z
Classification: PHOTOSYNTHESIS
Source organism: Euglena gracilis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-06-11
Authors: Kato, K., Nakajima, Y., Shen, J.R., Nagao, R.
PDB entry 9vfo: Crystal Structure of the NUAK1-MARK3 kinase domain chimera bound with small molecule inhibitor 2-amino-N-(5-((5-chloro-4-(((3R,3aR,6R,6aR)-6-methoxyhexahydrofuro[3,2-b]furan-3-yl)oxy)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)phenyl)acetamide
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.50011 Å
Deposited: 2025-06-11
Authors: Zhang, H., Zhang, Z.M.
PDB entry 9vfp: Structure of CVA6 empty particle
Classification: VIRUS
Source organism: Coxsackievirus A6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2025-06-11
Authors: Ke, X., Li, X., Liu, Z., Liu, K., Yan, X., Shu, B., Zhang, C.
PDB entry 9vfq: Structure of mature CVA6 virus
Classification: VIRUS
Source organism: Coxsackievirus A6
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.23 Å
Deposited: 2025-06-11
Authors: Ke, X., Li, X., Liu, Z., Liu, K., Yan, X., Shu, B., Zhang, C.
PDB entry 9vfr: Structure of mature Coxsackievirus A6 virion complexed with its receptor KREMEN1
Classification: VIRUS
Source organism: Coxsackievirus A6; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-06-11
Authors: Ke, X., Li, X., Liu, Z., Liu, K., Yan, X., Shu, B., Zhang, C.
PDB entry 9vfs: Structure of Coxsackievirus A6 Altered-particles
Classification: VIRUS
Source organism: Coxsackievirus A6
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.49 Å
Deposited: 2025-06-11
Authors: Ke, X., Li, X., Liu, Z., Liu, K., Yan, X., Shu, B., Zhang, C.
PDB entry 9vft: Structure of mature CVA6 virus complexed with 3H7 Fab
Classification: VIRUS
Source organism: Coxsackievirus A6; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2025-06-11
Authors: Ke, X., Li, X., Liu, Z., Liu, K., Yan, X., Shu, B., Zhang, C.
PDB entry 9vfu: Structure of mature CVA6 virus complexed with 1F4 Fab
Classification: VIRUS
Source organism: Coxsackievirus A6; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Deposited: 2025-06-11
Authors: Ke, X., Li, X., Liu, Z., Liu, K., Yan, X., Shu, B., Zhang, C.
PDB entry 9vfv: Glycogen phosphorylase tetramer from E. coli in complex with AMP
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli BL21(DE3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2025-06-11
Authors: Takai, M., Fukuda, Y., Inoue, T.
PDB entry 9vfw: Cryo-EM structure of pre-pore state II of heptameric alpha-hemolysin in the presence of RBCs
Classification: TOXIN
Source organism: Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-06-11
Authors: Chatterjee, A., Dutta, S., Roy, A.
PDB entry 9vfy: Crystal structure of Phaeodactylibacter sp. phosphoglucomutase in complex with glucose-6-phosphate
Classification: ISOMERASE
Source organism: Phaeodactylibacter sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.97 Å
Deposited: 2025-06-12
Authors: Shen, Y.W., Tu, T.
PDB entry 9vg0: SIRT2 structure in complex with H3K18myr peptide
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-06-12
Authors: Zhang, N., Hao, Q.
PDB entry 9vg1: Structure of CVA6 empty capsid complexed with 3H7 Fab
Classification: VIRUS
Source organism: Coxsackievirus A6; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2025-06-12
Authors: Ke, X., Li, X., Liu, Z., Liu, K., Yan, X., Shu, B., Zhang, C.
PDB entry 9vg3: SIRT2 structure in complex with H3K18myr peptide: pre NAD binding state
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-06-12
Authors: Zhang, N., Hao, Q.
PDB entry 9vg4: Structural complex of FTO bound with 8j
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-12
Authors: Yang, C.-G., Gan, J.H.
PDB entry 9vg5: NMR Solution Structure of the Monomeric Catalytic C-terminal Lobe of the E6AP HECT E3 Ubiquitin Ligase
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2025-06-12
Authors: Dag, C., Lambert, M., Lohr, F., Lee, W., Kazar, A.E., Dotsch, V.
PDB entry 9vg7: Cryo-EM Structure of Rc-o319 Ectodomain trimer
Classification: VIRAL PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-06-13
Authors: Matsumoto, K., Shihoya, W., Nureki, O.
PDB entry 9vgd: Helical assembly of TRADD death domain
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-06-13
Authors: Liu, J., Han, Y.
PDB entry 9vge: SIRT2 demyristoylation intermediate I structure
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.56 Å
Deposited: 2025-06-13
Authors: Zhang, N., Hao, Q.
PDB entry 9vgk: Ancestral L-tryptophan synthase beta-subunit 1 complex with Trp-PLP
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2025-06-14
Authors: Ohata, M., Fujita, S., Uchida, K., Kobayashi, S., Chisuga, T., Nakano, S.
PDB entry 9vgl: Ancestral L-tryptophan synthase beta-subunit 1
Classification: BIOSYNTHETIC PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-06-14
Authors: Ohata, M., Fujita, S., Uchida, K., Kobayashi, S., Chisuga, T., Nakano, S.
PDB entry 9vgm: Crystal structure of the cytochrome P450 RosC
Classification: OXIDOREDUCTASE
Source organism: Micromonospora rosaria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2025-06-14
Authors: Suzuki, H., Iizaka, Y., Anzai, Y., Noguchi, S.
PDB entry 9vgn: Crystal structure of the cytochrome P450 RosC mutant P107S/L176Q
Classification: OXIDOREDUCTASE
Source organism: Micromonospora rosaria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2025-06-14
Authors: Suzuki, H., Iizaka, Y., Anzai, Y., Noguchi, S.
PDB entry 9vgo: Crystal structure of the cytochrome P450 RosC in complexed with Rosamicin
Classification: OXIDOREDUCTASE
Source organism: Micromonospora rosaria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-14
Authors: Suzuki, H., Iizaka, Y., Anzai, Y., Noguchi, S.
PDB entry 9vgp: Crystal structure of the cytochrome P450 RosC in complexed with 20-dihydrorosamicin
Classification: OXIDOREDUCTASE
Source organism: Micromonospora rosaria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-14
Authors: Suzuki, H., Iizaka, Y., Anzai, Y., Noguchi, S.
PDB entry 9vgq: Crystal structure of the cytochrome P450 RosC in complexed with 20-deoxo-20-dihydrorosamicin
Classification: OXIDOREDUCTASE
Source organism: Micromonospora rosaria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-14
Authors: Suzuki, H., Iizaka, Y., Anzai, Y., Noguchi, S.
PDB entry 9vgr: Crystal Structure of the NUAK1-MARK3 kinase domain chimera bound with small molecule inhibitor 4-((5-((5-chloro-4-(((3R,3aR,6R,6aR)-6-methoxyhexahydrofuro[3,2-b]furan-3-yl)oxy)pyrimidin-2-yl)amino)-2-((2-(dimethylamino)ethyl)(methyl)amino)phenyl)carbamoyl)-1-methyl-3H-pyrazol-1-ium-3-ide
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.00001 Å
Deposited: 2025-06-14
Authors: Zhang, H., Zhang, Z.M.
PDB entry 9vgv: Crystal Structure of BlaA beta-lactamase in complex with the Antifungal Agent Tavaborole.
Classification: HYDROLASE
Source organism: Yersinia enterocolitica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-06-15
Authors: Dhankhar, K., Bhattacharya, S., Hazra, S.
PDB entry 9vgw: Crystal structure of human PCNA in complex with REV1 PIP-box
Classification: DNA BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2025-06-15
Authors: Hashimoto, H., Hishiki, A.
PDB entry 9vgz: SIRT2-F96A structure in complex with H3K18myr peptide and native NAD
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2025-06-15
Authors: Zhang, N., Hao, Q.
PDB entry 9vh0: SIRT2-H187A structure in complex with H3K18myr peptide and native NAD
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.41 Å
Deposited: 2025-06-16
Authors: Zhang, N., Hao, Q.
PDB entry 9vh1: cryoEM structure of ptuA-ptuB complex in Retron-Eco7 anti-phage system
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-16
Authors: Dai, Z.K., Wang, Y.J., Guan, Z.Y., Zou, T.T.
PDB entry 9vhe: cryoEM structure of retron-Eco7 complex
Classification: DNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.5 Å
Deposited: 2025-06-16
Authors: Dai, Z.K., Wang, Y.J., Guan, Z.Y., Zou, T.T.
PDB entry 9vhl: cryoEM structure of retron-Eco7 complex (form II)
Classification: DNA BINDING PROTEIN/RNA/DNA
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-06-17
Authors: Dai, Z.K., Wang, Y.J., Guan, Z.Y., Zou, T.T.
PDB entry 9vhm: structure of CC2D1A (coiled-coil and C2 domain containing - 1A)
Classification: UNKNOWN FUNCTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-17
Authors: Yeh, Y.H., Lin, M.G., Sun, X.H., Hsiao, C.D.
PDB entry 9vhz: Structure of MPXV M1R and hmMM1-40 Fab complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Monkeypox virus; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-06-17
Authors: Zhao, R.C., Zhang, Y., Wu, L.L., Wang, Q.H.
PDB entry 9vi4: Adeno-Associated Virus 6-M2, AAV6-M2
Classification: VIRUS
Source organism: Adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.8 Å
Deposited: 2025-06-17
Authors: Zheng, R., Ma, L.
PDB entry 9vi9: Cryo-EM Structure of NPFFR1 in complex with peptide RFRP-3
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-06-17
Authors: Na, M., Xu, F.
PDB entry 9vib: cryo-EM structure of human haemoglobin in the R2 conformation
Classification: OXYGEN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.26 Å
Deposited: 2025-06-18
Authors: Takahashi, K., Lee, Y., Nishizawa, T., Tame, J.R.H.
PDB entry 9vic: cryo-EM structure of human haemoglobin in the R conformation
Classification: OXYGEN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å
Deposited: 2025-06-18
Authors: Takahashi, K., Lee, Y., Nishizawa, T., Tame, J.R.H.
PDB entry 9vid: cryo-EM structure of alligator haemoglobin in the R conformation
Classification: OXYGEN BINDING
Source organism: Alligator mississippiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.22 Å
Deposited: 2025-06-18
Authors: Takahashi, K., Lee, Y., Nishizawa, T., Tame, J.R.H.
PDB entry 9vie: cryo-EM structure of alligator haemoglobin in the T-like conformation
Classification: OXYGEN BINDING
Source organism: Alligator mississippiensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å
Deposited: 2025-06-18
Authors: Takahashi, K., Lee, Y., Nishizawa, T., Tame, J.R.H.
PDB entry 9vif: Cryo-EM Structure of NPFFR1 in complex with peptide NPFF
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2025-06-18
Authors: Na, M., Xu, F.
PDB entry 9vim: Zea mays URE transporter DUR3 - URE bound
Classification: CHOLINE-BINDING PROTEIN
Source organism: Zea mays
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-06-18
Authors: Wang, Y.L., Lin, H.J., Zhang, J.R., Fan, M.R.
PDB entry 9vin: Ternary complex of TNFR1-DD, TRADD-DD and RIPK1-DD
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2025-06-18
Authors: Liu, J., Han, Y., Zhao, J., Gao, J., Yuan, J.
PDB entry 9vio: Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila, crystal form I
Classification: TRANSFERASE
Source organism: Akkermansia muciniphila ATCC BAA-835
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-06-18
Authors: Jiang, M., Kong, C., Wei, Q., Guo, S., Chen, X., Wang, M.
PDB entry 9vip: Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila, crystal form II
Classification: TRANSFERASE
Source organism: Akkermansia muciniphila ATCC BAA-835
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-06-18
Authors: Jiang, M., Kong, C., Wei, Q., Guo, S., Chen, X., Wang, M.
PDB entry 9viq: human alpha 7 nicotinic acetylcholine receptor L277A mutant in complex with L-nicotine (desensitized state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2025-06-19
Authors: Liu, S., Chen, H., Tian, C.
PDB entry 9vir: Crystal Structure of the NUAK1-MARK3 kinase domain chimera bound with small molecule inhibitor N-(5-((5-chloro-4-(((3aS,6R,6aR)-6-methoxy-3a,5,6,6a-tetrahydrofuro[3,2-b]furan-3-yl)oxy)pyrimidin-2-yl)amino)-2-(((2R,7aR)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)phenyl)-1-methyl-1H-pyrazole-4-carboxamide
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.80002 Å
Deposited: 2025-06-18
Authors: Zhang, H., Zhang, Z.M.
PDB entry 9vis: Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila in complex with AdoCbi-GDP
Classification: TRANSFERASE
Source organism: Akkermansia muciniphila ATCC BAA-835
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2025-06-18
Authors: Jiang, M., Kong, C., Wei, Q., Guo, S., Chen, X., Wang, M.
PDB entry 9vit: Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU H49A from Akkermansia muciniphila in complex with GTP
Classification: TRANSFERASE
Source organism: Akkermansia muciniphila ATCC BAA-835
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-06-18
Authors: Jiang, M., Kong, C., Wei, Q., Guo, S., Chen, X., Wang, M.
PDB entry 9vix: human alpha 7 nicotinic acetylcholine receptor L278A mutant in complex with L-nicotine (desensitized state)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2025-06-19
Authors: Liu, S., Chen, H., Tian, C.
PDB entry 9viy: Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the E2P state
Classification: MEMBRANE PROTEIN
Source organism: Squalus acanthias
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-06-19
Authors: Kanai, R., Vilsen, B., Cornelius, F., Toyoshima, C.
PDB entry 9viz: Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the transient state of dephosphorylation (E2~P)
Classification: MEMBRANE PROTEIN
Source organism: Squalus acanthias
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-19
Authors: Kanai, R., Vilsen, B., Cornelius, F., Toyoshima, C.
PDB entry 9vj0: Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ATP form)
Classification: MEMBRANE PROTEIN
Source organism: Squalus acanthias
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2025-06-19
Authors: Kanai, R., Vilsen, B., Cornelius, F., Toyoshima, C.
PDB entry 9vj1: Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ADP form)
Classification: MEMBRANE PROTEIN
Source organism: Squalus acanthias
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-06-19
Authors: Kanai, R., Cornelius, F., Vilsen, B., Toyoshima, C.
PDB entry 9vj2: Crystal structure of palytoxin-bound Na+,K+-ATPase in the E2P state
Classification: MEMBRANE PROTEIN
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 3.79 Å
Deposited: 2025-06-19
Authors: Kanai, R., Vilsen, B., Cornelius, F., Toyoshima, C.