LiteFold/PDB huggingface dataset:
PDB entry 8ta3: Cryo-EM structure of the human CLC-2 chloride channel transmembrane domain Apo state with resolved N-terminal hairpin
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2023-06-26
Authors: Xu, M., Neelands, T., Powers, A.S., Liu, Y., Miller, S., Pintilie, G., Du Bois, J., Dror, R.O., Chiu, W., Maduke, M.
PDB entry 8ta4: Cryo-EM structure of the human CLC-2 chloride channel transmembrane domain with symmetric C-terminal
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2023-06-26
Authors: Xu, M., Neelands, T., Powers, A.S., Liu, Y., Miller, S., Pintilie, G., Du Bois, J., Dror, R.O., Chiu, W., Maduke, M.
PDB entry 8ta5: Title: Cryo-EM structure of the human CLC-2 chloride channel transmembrane domain with asymmetric C-terminal
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Deposited: 2023-06-26
Authors: Xu, M., Neelands, T., Powers, A.S., Liu, Y., Miller, S., Pintilie, G., Du Bois, J., Dror, R.O., Chiu, W., Maduke, M.
PDB entry 8ta6: Cryo-EM structure of the human CLC-2 chloride channel C-terminal domain
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.03 Å
Deposited: 2023-06-26
Authors: Xu, M., Neelands, T., Powers, A.S., Liu, Y., Miller, S., Pintilie, G., Du Bois, J., Dror, R.O., Chiu, W., Maduke, M.
PDB entry 8ta7: Zophobas morio black wasting virus strain OR-molitor empty capsid structure
Classification: VIRUS
Source organism: Tenebrio molitor
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2023-06-26
Authors: Penzes, J.J., Kaelber, J.T.
PDB entry 8ta8: Sequence specific (AATT) orientation of netropsin molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x6)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-06-26
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8ta9: Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x6)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2023-06-27
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8taa: Right-left hybrid parallel G-quadruplex in complex with N-methyl mesoporphyrin
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-06-27
Authors: Seth, P.C., Yatsunyk, L.A.
PDB entry 8tab: RTA-PD00589
Classification: TOXIN,HYDROLASE/INHIBITOR
Source organism: Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.26 Å
Deposited: 2023-06-27
Authors: Rudolph, M.J., Tumer, N.
PDB entry 8tac: Designed DNA binding protein
Classification: DE NOVO PROTEIN/DNA
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-06-27
Authors: Doyle, L., Stoddard, B.L., Glasscock, C.J., McHugh, R.P., Pecoraro, R.J.
PDB entry 8tad: RTA in complex with inhibitor RUNT-206
Classification: TOXIN,HYDROLASE/INHIBITOR
Source organism: Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.76 Å
Deposited: 2023-06-27
Authors: Rudolph, M.J., Tumer, N.
PDB entry 8taf: Autographa californica multiple nucleopolyhedrovirus VP39
Classification: VIRAL PROTEIN
Source organism: Autographa californica multiple nucleopolyhedrovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-27
Authors: Benning, F.M.C., Chao, L.H.
PDB entry 8tag: TMEM16F, with Calcium and PIP2, no inhibitor
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-27
Authors: Feng, S., Cheng, Y.
PDB entry 8tah: Cryo-EM structure of Cortactin-bound to Arp2/3 complex
Classification: CONTRACTILE PROTEIN
Source organism: Bos taurus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Deposited: 2023-06-27
Authors: Fregoso, F.E., van Eeuwen, T., Dominguez, R.
PDB entry 8tai: TMEM16F, with Calcium and PIP2, no inhibitor, Cl2
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-06-27
Authors: Wu, H., Feng, S., Cheng, Y.
PDB entry 8taj: Sequence specific (AATT) orientation of netropsin molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x6)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2023-06-27
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tal: TMEM16F, with Calcium and PIP2, no inhibitor, Cl1
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2023-06-27
Authors: Wu, H., Feng, S., Cheng, Y.
PDB entry 8tam: Sequence specific (AATT) orientation of Hoechst molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x6)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-06-27
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tan: CryoEM structure of MFRV-VILP bound to IGF1Rzip
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2023-06-27
Authors: Kirk, N.S.
PDB entry 8tao: Quis and CDPPB bound active mGlu5
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-27
Authors: Krishna Kumar, K., Wang, H., Kobilka, B.K.
PDB entry 8tap: Sequence specific (AATT) orientation of netropsin molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x6)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-06-27
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8taq: Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x6)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.951 Å
Deposited: 2023-06-27
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tar: APC/C-CDH1-UBE2C-Ubiquitin-CyclinB-NTD
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-06-27
Authors: Bodrug, T., Welsh, K.A., Bolhuis, D.L., Paulakonis, E., Martinez-Chacin, R.C., Liu, B., Pinkin, N., Bonacci, T., Cui, L., Xu, P., Roscow, O., Amann, S.J., Grishkovskaya, I., Emanuele, M.J., Harrison, J.S., Steimel, J.P., Hahn, K.M., Zhang, W., Zhong, E., Haselbach, D., Brown, N.G.
PDB entry 8tas: PRC2 monomer bound to nucleosome
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2023-06-27
Authors: Sauer, P.V., Pavlenko, E., Nogales, E., Poepsel, S.
PDB entry 8tat: CRYSTAL STRUCTURE OF R9A SPIN LABELED T4 LYSOZYME MUTANT K65R9A/R76R9A
Classification: ANTIMICROBIAL PROTEIN,HYDROLASE
Source organism: Escherichia phage T4
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2023-06-27
Authors: Chen, M., Hubbell, W.L., Cascio, D.
PDB entry 8tau: APC/C-CDH1-UBE2C-UBE2S-Ubiquitin-CyclinB
Classification: LIGASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-06-27
Authors: Bodrug, T., Welsh, K.A., Bolhuis, D.L., Paulakonis, E., Martinez-Chacin, R.C., Liu, B., Pinkin, N., Bonacci, T., Cui, L., Xu, P., Roscow, O., Amann, S.J., Grishkovskaya, I., Emanuele, M.J., Harrison, J.S., Steimel, J.P., Hahn, K.M., Zhang, W., Zhong, E., Haselbach, D., Brown, N.G.
PDB entry 8tav: FphH, Staphylococcus aureus fluorophosphonate-binding serine hydrolases H, boronic acid-based compound N34 bound
Classification: HYDROLASE
Source organism: Staphylococcus aureus subsp. aureus USA300
Experimental method: X-RAY DIFFRACTION
Resolution: 1.39 Å
Deposited: 2023-06-28
Authors: Fellner, M.
PDB entry 8taw: The crystal structure of T252E CYP199A4 bound to 4-(pyridin-2-yl)benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2023-06-28
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8tay: The crystal structure of T252E CYP199A4 bound to 4-(thiophen-3-yl)benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris HaA2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.021 Å
Deposited: 2023-06-28
Authors: Podgorski, M.N., Bell, S.G.
PDB entry 8taz: Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors
Classification: VIRAL PROTEIN
Source organism: Neogale vison; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å
Deposited: 2023-06-28
Authors: Ahn, H.M., Calderon, B., Fan, X., Gao, Y., Horgan, N., Liang, B.
PDB entry 8tb0: Cryo-EM Structure of GPR61-G protein complex stabilized by scFv16
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.47 Å
Deposited: 2023-06-28
Authors: Lees, J.A., Dias, J.M., Han, S.
PDB entry 8tb1: Solution NMR structure of a RiPP proteusin precursor protein
Classification: BIOSYNTHETIC PROTEIN
Source organism: Methylovulum psychrotolerans; synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2023-06-28
Authors: McShan, A.C., Vinayak, A., Nguyen, N.A.
PDB entry 8tb2: Structure of SasG (type II) (residues 165-421) from Staphylococcus aureus MW2
Classification: CELL ADHESION
Source organism: Staphylococcus aureus subsp. aureus MW2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-06-28
Authors: Maciag, J.J., Herr, A.B.
PDB entry 8tb3: Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-06-28
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tb4: Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x5)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-06-28
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tb5: TYK2 JH2 bound to Compound7
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2023-06-28
Authors: Argiriadi, M.A., Van Epps, S.A., Breinlinger, E.C.
PDB entry 8tb6: TYK2 JH2 bound to Compound14
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2023-06-28
Authors: Argiriadi, M.A., Van Epps, S.A., Breinlinger, E.C.
PDB entry 8tb7: Cryo-EM Structure of GPR61-
Classification: SIGNALING PROTEIN
Source organism: Escherichia coli; Homo sapiens; Lama glama
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.94 Å
Deposited: 2023-06-28
Authors: Lees, J.A., Dias, J.M., Han, S.
PDB entry 8tb8: Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-06-28
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tb9: PRC2-J119-450 monomer bound to H1-nucleosome
Classification: GENE REGULATION
Source organism: Homo sapiens; Xenopus laevis; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2023-06-28
Authors: Sauer, P.V., Cookis, T., Pavlenko, E., Nogales, E., Poepsel, S.
PDB entry 8tba: Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a crystallographic artifact
Classification: ISOMERASE
Source organism: Helicobacter pylori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-06-28
Authors: Propp, J., Spies, M.A.
PDB entry 8tbb: F9S, novel TIM-3 targeting antibody, bound to IgV domain of TIM-3
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2023-06-28
Authors: Oganesyan, V., van Dyk, N., Mazor, Y., Yang, C.
PDB entry 8tbd: Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x5)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2023-06-28
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tbe: Co-crystal structure of SARS-CoV-2 Mpro with Pomotrelvir
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2023-06-28
Authors: Olland, A., Fontano, E., White, A.
PDB entry 8tbf: Tricomplex of RMC-7977, KRAS WT, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-06-28
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 8tbg: Tricomplex of RMC-7977, HRAS WT, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2023-06-28
Authors: Chen, A., Tomlinson, A.C.A., Knox, J.E., Yano, J.K.
PDB entry 8tbh: Tricomplex of RMC-7977, KRAS G12R, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-06-28
Authors: Bar Ziv, T., Zhang, D., Tomlinson, A.C.A., Knox, J.E., Yano, J.K.
PDB entry 8tbi: Tricomplex of RMC-7977, NRAS WT, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.59 Å
Deposited: 2023-06-28
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 8tbj: Tricomplex of RMC-7977, KRAS G12A, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2023-06-28
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 8tbk: Tricomplex of RMC-7977, KRAS G12C, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2023-06-28
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 8tbl: Tricomplex of RMC-7977, KRAS G12D, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-06-28
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 8tbm: Tricomplex of RMC-7977, KRAS G12V, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2023-06-28
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 8tbn: Tricomplex of RMC-7977, KRAS G12S, and CypA
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-06-28
Authors: Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.
PDB entry 8tbo: Sequence specific (AATT) orientation of netropsin molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.599 Å
Deposited: 2023-06-29
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tbp: HLA-DRB1*15:01 in complex with smith antigen
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.12621 Å
Deposited: 2023-06-29
Authors: Ting, Y.T., Broury, A., Ooi, J.
PDB entry 8tbq: The crystal structure of human VISTA extra cellular domain in complex with Fab fragment of pH-selective anti-VISTA antibody
Classification: PROTEIN BINDING,IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.593 Å
Deposited: 2023-06-29
Authors: van der Horst, E.H., Mukherjee, A., Thisted, T.
PDB entry 8tbr: Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor MAM758
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Mycobacterium ulcerans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-06-29
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 8tbs: Structure of human erythrocyte pyruvate kinase in complex with an allosteric activator AG-946
Classification: TRANSFERASE/ACTIVATOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-06-29
Authors: Jin, L., Padyana, A.
PDB entry 8tbt: Structure of human erythrocyte pyruvate kinase in complex with an allosteric activator Compound 2
Classification: TRANSFERASE/ACTIVATOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2023-06-29
Authors: Jin, L., Padyana, A.
PDB entry 8tbu: Structure of human erythrocyte pyruvate kinase in complex with an allosteric activator Compound 12
Classification: TRANSFERASE/ACTIVATOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2023-06-29
Authors: Jin, L., Padyana, A.
PDB entry 8tbv: Human Class I MHC HLA-A2 in complex with sorting nexin 24 (127-135) neoantigen KLSHQLVLL
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.64 Å
Deposited: 2023-06-29
Authors: Arbuiso, A., Weiss, L.I., Brambley, C.A., Ma, J., Keller, G.L.J., Ayres, C.M., Baker, B.M.
PDB entry 8tbw: Human Class I MHC HLA-A2 in complex with sorting nexin 24 (127-135) peptide KLSHQPVLL
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.081 Å
Deposited: 2023-06-29
Authors: Arbuiso, A., Weiss, L.I., Brambley, C.A., Ma, J., Keller, G.L.J., Ayres, C.M., Baker, B.M.
PDB entry 8tbx: Crystal structure of human DDX1 helicase in complex with ADP
Classification: RNA BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2023-06-29
Authors: Zeng, H., Dong, A., Li, Y., Yen, H., Hejazi, Z., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Halabelian, L.
PDB entry 8tby: Apo Bcs1, unsymmetrized
Classification: TRANSLOCASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2023-06-29
Authors: Zhan, J., Xia, D.
PDB entry 8tc0: Cryo-EM Structure of Spike Glycoprotein from Bat Coronavirus WIV1 in Closed Conformation
Classification: VIRAL PROTEIN
Source organism: Bat SARS-like coronavirus WIV1
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.88 Å
Deposited: 2023-06-29
Authors: Bostina, M., Hills, F.R., Eruera, A.
PDB entry 8tc1: Cryo-EM Structure of Spike Glycoprotein from Civet Coronavirus 007 in Closed Conformation
Classification: VIRAL PROTEIN
Source organism: Civet SARS CoV 007/2004
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.92 Å
Deposited: 2023-06-29
Authors: Bostina, M., Hills, F.R., Eruera, A.R.
PDB entry 8tc2: Sequence specific (AATT) orientation of netropsin molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x5)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2023-06-29
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tc3: CryoEM structure of nucleotide-free form of the nitrogenase iron protein from A. vinelandii
Classification: OXIDOREDUCTASE
Source organism: Azotobacter vinelandii DJ; Discosoma sp. LW-2004
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å
Deposited: 2023-06-29
Authors: Warmack, R.A., Rees, D.C.
PDB entry 8tc4: Sequence specific (TGTCA) orientation of ImPyPy molecules at a unique minor groove binding site within a self-assembled 3D DNA lattice (4x5)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.06 Å
Deposited: 2023-06-29
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tc5: Cryo-EM Structure of Spike Glycoprotein from Civet Coronavirus SZ3 in Closed Conformation
Classification: VIRAL PROTEIN
Source organism: Civet SARS CoV SZ3/2003
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Deposited: 2023-06-29
Authors: Bostina, M., Hills, F.R., Eruera, A.
PDB entry 8tc6: Sequence specific (AATT and TGTCA) orientation of netropsin and ImPyPy molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x5)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2023-06-29
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tc7: Human asparaginyl-tRNA synthetase, apo form
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-30
Authors: Dogovski, C., Metcalfe, R.D., Xie, S.C., Morton, C.J., Tilley, L., Griffin, M.D.W.
PDB entry 8tc8: Human asparaginyl-tRNA synthetase bound to adenosine 5'-sulfamate
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-30
Authors: Dogovski, C., Metcalfe, R.D., Xie, S.C., Morton, C.J., Tilley, L., Griffin, M.D.W.
PDB entry 8tc9: Human asparaginyl-tRNA synthetase bound to OSM-S-106
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-06-30
Authors: Dogovski, C., Metcalfe, R.D., Xie, S.C., Morton, C.J., Tilley, L., Griffin, M.D.W.
PDB entry 8tca: Structure of a mouse IgG antibody antigen-binding fragment (Fab) targeting N6-methyladenosine (m6A), an RNA modification, no ligand
Classification: IMMUNE SYSTEM
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2023-06-30
Authors: Angelo, M.C., Aoki, S.T.
PDB entry 8tcb: Structure of human C4b-binding protein alpha chain CCP domains 1 and 2 in complex with the hypervariable region of group A Streptococcus M87 protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Streptococcus pyogenes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.69 Å
Deposited: 2023-06-30
Authors: McGowan, M.A., Kolesinski, P., Ghosh, P.
PDB entry 8tcc: GTP Cyclohydrolase-IB with dehydrocostus lactone
Classification: HYDROLASE/INHIBITOR
Source organism: Burkholderia pseudomallei
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2023-06-30
Authors: McWhorter, K.L., Amaya Lopez, C.Y., Davis, K.M.
PDB entry 8tcd: Structure of Alistipes sp. 3-Keto-beta-glucopyranoside-1,2-Lyase AL1
Classification: ISOMERASE
Source organism: Alistipes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2023-06-30
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tce: Lipoprotein(a) Kringle IV domain 8 - Lp(a) KIV8 in complex with LY3353871
Classification: LIPID BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.07 Å
Deposited: 2023-06-30
Authors: Hendle, J., Weichert, K., Sauder, J.M.
PDB entry 8tcf: Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2023-06-30
Authors: Campbell, M.G., Fernandez, A., Roy, A., Kraft, J., Baker, D.
PDB entry 8tcg: Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Classification: DE NOVO PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-06-30
Authors: Campbell, M.G., Fernandez, A., Roy, A., Kraft, J., Baker, D.
PDB entry 8tch: Initiation of replication protein with helicase activity encoded by Pathogenicity Island SaPIBov1
Classification: REPLICATION
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2023-07-01
Authors: Mir-Sanchis, I., Rice, P.
PDB entry 8tci: Crystal structure of DNMT3C-DNMT3L in complex with CGG DNA
Classification: TRANSFERASE
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.19 Å
Deposited: 2023-07-01
Authors: Khudaverdyan, N., Song, J.
PDB entry 8tcj: Apo crystal Structure of modified HIV reverse transcriptase p51 domain (FPC2)
Classification: DNA BINDING PROTEIN
Source organism: HIV whole-genome vector AA1305#18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.848 Å
Deposited: 2023-07-02
Authors: Pedersen, L.C., London, R.E.
PDB entry 8tck: Apo crystal Structure of modified HIV reverse transcriptase p51 domain (FPC1)
Classification: DNA BINDING PROTEIN
Source organism: HIV whole-genome vector AA1305#18
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-02
Authors: Pedersen, L.C., London, R.E.
PDB entry 8tcl: Crystal Structure of modified HIV reverse transcriptase p51 domain (FPC2) with picrate bound
Classification: DNA BINDING PROTEIN
Source organism: HIV whole-genome vector AA1305#18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-02
Authors: Pedersen, L.C., London, R.E.
PDB entry 8tcm: Crystal Structure of modified HIV reverse transcriptase p51 domain (FPC1) with picric acid and Xanthene-1,3,6,8-tetrol bound
Classification: DNA BINDING PROTEIN
Source organism: HIV whole-genome vector AA1305#18
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2023-07-02
Authors: Pedersen, L.C., London, R.E.
PDB entry 8tco: HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2023-07-02
Authors: Goldsmith, J.A., McLellan, J.S.
PDB entry 8tcr: Structure of glucose bound Alistipes sp. 3-Keto-beta-glucopyranoside-1,2-Lyase AL1
Classification: ISOMERASE
Source organism: Alistipes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-07-02
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tcs: Structure of trehalose bound Alistipes sp. 3-Keto-beta-glucopyranoside-1,2-Lyase AL1
Classification: ISOMERASE
Source organism: Alistipes
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2023-07-02
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tct: Structure of 3K-GlcH bound Bacteroides thetaiotaomicron 3-Keto-beta-glucopyranoside-1,2-Lyase BT1
Classification: ISOMERASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2023-07-02
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tcu: Structure of PYCR1 complexed with 2-chloro-5-(2-oxoimidazolidin-1-yl)benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tcv: Structure of PYCR1 complexed with 4-bromobenzene-1,3-dicarboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tcw: Structure of PYCR1 complexed with 2-methyl-3-(2-oxoimidazolidin-1-yl)benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tcx: Structure of PYCR1 complexed with 2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.72 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tcy: Structure of PYCR1 complexed with 7-fluoro-2-oxo-1,2,3,4-tetrahydroquinoline-6-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tcz: Structure of PYCR1 complexed with 2-(pyridin-2-yl)cyclopropane-1-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td0: Structure of PYCR1 complexed with 5-oxo-7a-phenyl-hexahydropyrrolo[2,1-b][1,3]thiazole-3-carboxylic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td1: Structure of PYCR1 complexed with 3-(6-Oxa-9-azaspiro(4.5)decane-9-carbonyl)benzoic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.88 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td2: Structure of PYCR1 complexed with NADH and cyclobutane-1,1-dicarboxylic acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td3: Structure of PYCR1 complexed with NADH and (S)-Tetrahydro-2H-pyran-2-carboxylic acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.67 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td4: Structure of PYCR1 complexed with NADH and 1,3-Dithiolane-2-carboxylic acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td5: Structure of PYCR1 complexed with NADH and Tetrahydrothiophene-2-carboxylic acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td6: Structure of PYCR1 complexed with NADH and 2-(Methylthio)acetic acid
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td7: Structure of PYCR1 complexed with 2S-hydroxy-3-methylbutyric acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td8: Structure of PYCR1 complexed with NADH and 2S-Hydroxy-3,3-dimethylbutyric acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8td9: Structure of PYCR1 complexed with NADH and L-pipecolic acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tda: Structure of Bacteroides thetaiotaomicron 3-Keto-2-hydroxy-glucal-hydratase BT2
Classification: ISOMERASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2023-07-02
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tdb: Structure of PYCR1 complexed with NADH and 1-hydroxyethane-1-sulfonate
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tdc: Structure of PYCR1 complexed with NADH and 1,3-dithiane-2-carboxylic acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tdd: Structure of PYCR1 complexed with NADH and 2-(furan-2-yl)acetic acid
Classification: OXIDOREDUCTASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2023-07-02
Authors: Tanner, J.J., Meeks, K.R.
PDB entry 8tde: Structure of glucose bound Bacteroides thetaiotaomicron 3-Keto-2-hydroxy-glucal-hydratase BT2
Classification: ISOMERASE
Source organism: Bacteroides thetaiotaomicron
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-07-02
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tdf: Structure of Alistipes sp. Glucoside-3-dehydrogenase AL3
Classification: ISOMERASE
Source organism: Alistipes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-02
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tdh: Structure of trehalose bound Alistipes sp. Glucoside-3-dehydrogenase AL3
Classification: OXIDOREDUCTASE
Source organism: Alistipes
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å
Deposited: 2023-07-03
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tdi: Structure of P2B11 Glucuronide-3-dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Collinsella tanakaei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2023-07-03
Authors: Lazarski, A.C., Worrall, L.J., Strynadka, N.C.J.
PDB entry 8tdj: Cryo-EM structure of the wild-type AtMSL10 in GDN
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-07-03
Authors: Zhang, J., Yuan, P.
PDB entry 8tdk: Cryo-EM structure of AtMSL10-G556V
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-03
Authors: Zhang, J., Yuan, P.
PDB entry 8tdl: Cryo-EM structure of the wild-type AtMSL10 in saposin
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-03
Authors: Zhang, J., Yuan, P.
PDB entry 8tdm: Cryo-EM structure of AtMSL10-K539E
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2023-07-03
Authors: Zhang, J., Yuan, P.
PDB entry 8tdn: Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, wild-type morphology
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-04
Authors: Nguyen, B.A., Singh, V., Saelices, L.
PDB entry 8tdo: Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, variant-type morphology
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2023-07-04
Authors: Nguyen, B.A., Singh, V., Saelices, L.
PDB entry 8tdp: Time-resolved SFX-XFEL crystal structure of CYP121 bound with cYY reacted with peracetic acid for 200 milliseconds
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2023-07-04
Authors: Nguyen, R.C., Dasgupta, M., Bhowmick, A., Kern, J.F., Liu, A.
PDB entry 8tdq: SFX-XFEL structure of CYP121 cocrystallized with substrate cYY
Classification: OXIDOREDUCTASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2023-07-04
Authors: Nguyen, R.C., Dasgupta, M., Bhowmick, A., Kern, J.F., Liu, A.
PDB entry 8tdr: Crystal structure of the methyltransferase domain of DNMT3A homotetramer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.32 Å
Deposited: 2023-07-04
Authors: Lu, J.W., Song, J.K.
PDB entry 8tdt: Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x6)
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.007 Å
Deposited: 2023-07-04
Authors: Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.
PDB entry 8tdu: STX-478, a Mutant-Selective, Allosteric Inhibitor bound to PI3Kalpha
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.11 Å
Deposited: 2023-07-05
Authors: Hilbert, B.J., Brooijmans, N., Buckbinder, L., St.Jean Jr., D.J.
PDB entry 8tdv: ssRNA bound SAMHD1 T closed
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.44 Å
Deposited: 2023-07-05
Authors: Sung, M., Huynh, K., Han, S.
PDB entry 8tdw: ssRNA bound SAMHD1 T open
Classification: HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2023-07-05
Authors: Sung, M., Huynh, K., Han, S.
PDB entry 8tdx: TRNM-b.01 in complex with HIV Env fusion peptide
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2023-07-05
Authors: Olia, A.S., Kwong, P.D.
PDB entry 8tdy: 16mer self-complementary duplex RNA with D:U pair sequence 1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2023-07-05
Authors: Fang, Z., Jia, X., Szostak, J.W.
PDB entry 8tdz: 16mer self-complementary duplex RNA with D:U pair sequence 2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2023-07-05
Authors: Fang, Z., Jia, X., Szostak, J.W.
PDB entry 8te0: 16mer self-complementary duplex RNA with D:C pair sequence 1
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.42 Å
Deposited: 2023-07-05
Authors: Fang, Z., Jia, X., Szostak, J.W.
PDB entry 8te1: Crystal structure of the methyltransferase domain of R882H/R676K DNMT3A homotetramer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.48 Å
Deposited: 2023-07-05
Authors: Lu, J.W., Song, J.K.
PDB entry 8te2: 16mer self-complementary duplex RNA with D:C pair sequence 2
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2023-07-05
Authors: Fang, Z., Jia, X., Szostak, J.W.
PDB entry 8te3: Crystal structure of the methyltransferase domain of R882C/R676K DNMT3A homotetramer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2023-07-05
Authors: Lu, J.W., Song, J.K.
PDB entry 8te4: Crystal structure of the methyltransferase domain of R882H/N879A DNMT3A homotetramer
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
Deposited: 2023-07-05
Authors: Lu, J.W., Song, J.K.
PDB entry 8te5: Crystal structure of a multiple lysine-to-arginine substitution mutant of the human CRIg C3b-binding domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.502 Å
Deposited: 2023-07-05
Authors: Abram, T.G., Geisbrecht, B.V.
PDB entry 8te6: Crystal structure of a multiple lysine-to-arginine substitution mutant of the human CRIg C3b-binding domain
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.251 Å
Deposited: 2023-07-05
Authors: Abram, T.G., Geisbrecht, B.V.
PDB entry 8te7: Structure of TRNM-f.01
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2023-07-05
Authors: Bender, M.F., Olia, A.S., Kwong, P.D.
PDB entry 8te8: Crystal Structure of Pyridoxal Reductase (PDXI)
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-05
Authors: Donkor, A.K., Safo, M.K., Musayev, F.N.
PDB entry 8te9: Crystal Structure of an Isethionate bound Substrate Binding Protein (IseP) from an Isethionate TRAP Transporter
Classification: TRANSPORT PROTEIN
Source organism: Oleidesulfovibrio alaskensis G20
Experimental method: X-RAY DIFFRACTION
Resolution: 1.25 Å
Deposited: 2023-07-05
Authors: Newton-Vesty, M.C., Dobson, R.C.J.
PDB entry 8tea: HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Human betaherpesvirus 5
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2023-07-05
Authors: Goldsmith, J.A., McLellan, J.S.
PDB entry 8teb: Structure of MKbur
Classification: TRANSFERASE
Source organism: Methanococcoides burtonii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2023-07-06
Authors: Peat, T.S., Newman, J., Esquirol, L., Nebl, T., Scott, C., Vickers, C., Sainsbury, F.
PDB entry 8tec: Crystal structure of Kindlin2 in complex with acylated beta1 integrin peptide
Classification: CELL ADHESION
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.04 Å
Deposited: 2023-07-06
Authors: Zhang, P.F., Wu, J.H.
PDB entry 8ted: PorX primitive orthorhombic crystal form
Classification: SIGNALING PROTEIN
Source organism: Flavobacterium johnsoniae UW101
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2023-07-06
Authors: Saran, A., Zeytuni, N.
PDB entry 8tee: Crystal structure of Kindlin2 in complex with K794Q mutated beta1 integrin
Classification: CELL ADHESION
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2023-07-06
Authors: Zhang, P.F., Wu, J.H.
PDB entry 8tef: PorX primitive monoclinic crystal form
Classification: SIGNALING PROTEIN
Source organism: Flavobacterium johnsoniae UW101
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2023-07-06
Authors: Saran, A., Zeytuni, N.
PDB entry 8teg: Cryo-EM structure of Arabidopsis thaliana Bor1 in lipid nanodiscs (protomer-focused refinement)
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.15 Å
Deposited: 2023-07-06
Authors: Jiang, Y., Jiang, J.
PDB entry 8teh: Cryo-EM structure of Arabidopsis thaliana Bor1 in lipid nanodiscs
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2023-07-06
Authors: Jiang, Y., Jiang, J.
PDB entry 8tei: Cryo-EM structure of Arabidopsis thaliana Bor1 in lauryl maltose neopentyl glycol (LMNG)
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2023-07-06
Authors: Jiang, Y., Jiang, J.
PDB entry 8tej: Cryo-EM structure of Arabidopsis thaliana Bor1 mutant (R637E/E641R/R643E) in the occluded conformation in lauryl maltose neopentyl glycol (LMNG) (protomer-focused refinement)
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2023-07-06
Authors: Jiang, Y., Jiang, J.
PDB entry 8tek: Baseplate of Nexin-dynein regulatory complex from Tetrahymena thermophila
Classification: PROTEIN BINDING
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2023-07-06
Authors: Ghanaeian, A.G., Black, C.S., Yang, S.K., Bui, K.H.
PDB entry 8tel: Cryo-EM structure of Arabidopsis thaliana Bor1 mutant (R637E/E641R/R643E) in the occluded conformation in lauryl maltose neopentyl glycol (LMNG)
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2023-07-06
Authors: Jiang, Y., Jiang, J.
PDB entry 8tem: Cryo-EM structure of Arabidopsis thaliana Bor1 mutant (R637E/E641R/R643E) in the inward-facing conformation in lauryl maltose neopentyl glycol (LMNG)
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-07-06
Authors: Jiang, Y., Jiang, J.
PDB entry 8ten: Cryo-EM structure of Arabidopsis thaliana Bor1 mutant (R637E/E641R/R643E) in mixed occluded/inward-facing conformations in lauryl maltose neopentyl glycol (LMNG)
Classification: TRANSPORT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2023-07-06
Authors: Jiang, Y., Jiang, J.
PDB entry 8teo: Shaker in low K+ (4mM K+)
Classification: MEMBRANE PROTEIN
Source organism: Drosophila melanogaster
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å
Deposited: 2023-07-06
Authors: Tan, X., Swartz, K.J.
PDB entry 8tep: Human cytomegalovirus portal vertex, virion configuration 1 (VC1)
Classification: VIRUS
Source organism: Human herpesvirus 5 strain AD169
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2023-07-06
Authors: Jih, J., Liu, Y.T., Liu, W., Zhou, H.
PDB entry 8teq: Tropomyosin-receptor kinase fused gene protein (TRK-fused gene protein; TFG) Low Complexity Domain (residues 237-327) G269V mutant, amyloid fiber
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Purpureocillium lilacinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Deposited: 2023-07-06
Authors: Rosenberg, G.M., Sawaya, M.R., Boyer, D.R., Ge, P., Abskharon, R., Eisenberg, D.S.
PDB entry 8ter: Tropomyosin-receptor kinase fused gene protein (TRK-fused gene protein; TFG) Low Complexity Domain (residues 237-327) P285L mutant, amyloid fiber
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens; Purpureocillium lilacinum
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Deposited: 2023-07-06
Authors: Rosenberg, G.M., Sawaya, M.R., Boyer, D.R., Ge, P., Abskharon, R., Eisenberg, D.S.
PDB entry 8tes: Human cytomegalovirus portal vertex, virion configuration 2 (VC2)
Classification: VIRUS
Source organism: Human herpesvirus 5 strain AD169
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2023-07-06
Authors: Jih, J., Liu, Y.T., Liu, W., Zhou, H.
PDB entry 8tet: Human cytomegalovirus portal vertex, non-infectious enveloped particle (NIEP) configuration 1 (NC1)
Classification: VIRUS
Source organism: Human herpesvirus 5 strain AD169
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.26 Å
Deposited: 2023-07-07
Authors: Jih, J., Liu, Y.T., Liu, W., Zhou, H.
PDB entry 8teu: Human cytomegalovirus portal vertex, non-infectious enveloped particle (NIEP) configuration 2 - inverted (NC2-inv)
Classification: VIRUS
Source organism: Human herpesvirus 5 strain AD169
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.01 Å
Deposited: 2023-07-07
Authors: Jih, J., Liu, Y.T., Liu, W., Zhou, H.
PDB entry 8tew: Human cytomegalovirus penton vertex, CVSC-bound configuration
Classification: VIRUS
Source organism: Human herpesvirus 5 strain AD169
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2023-07-07
Authors: Jih, J., Liu, Y.T., Liu, W., Zhou, H.
PDB entry 8tex: Avian Adeno-associated virus - empty capsid
Classification: VIRUS
Source organism: Avian adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Deposited: 2023-07-07
Authors: Hsi, J., Mietzsch, M., Chipman, P., Afione, S., Zeher, A., Huang, R., Chiorini, J., McKenna, R.
PDB entry 8tey: Avian Adeno-associated virus - empty capsid
Classification: VIRUS
Source organism: Avian adeno-associated virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å
Deposited: 2023-07-07
Authors: Hsi, J., Mietzsch, M., Chipman, P., Afione, S., Zeher, A., Huang, R., Chiorini, J., McKenna, R.