LiteFold/PDB huggingface dataset:
PDB entry 7kb1: Complex of O-acety-L-homoserine aminocarboxypropyltransferase (MetY) from Thermotoga maritima and a key reaction intermediate
Classification: TRANSFERASE
Source organism: Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-10-01
Authors: Brewster, J.L., Pachl, P., Squire, C., Selmer, M., Patrick, W.M.
PDB entry 7kb2: Putative ankyrin repeat domain-containing protein from Enterobacter cloacae
Classification: PROTEIN BINDING
Source organism: Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-01
Authors: Osipiuk, J., Tesar, C., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7kb3: The structure of a sensor domain of a histidine kinase (VxrA) from Vibrio cholerae O1 biovar eltor str. N16961, 2nd form
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-10-01
Authors: Tan, K., Wu, R., Jedrzejczak, R., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7kb5: Cryo-EM structure of the Sec complex from yeast, Sec63 FN3 and residues 210-216 mutated
Classification: PROTEIN TRANSPORT
Source organism: Saccharomyces cerevisiae BY4741
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-10-01
Authors: Itskanov, S., Park, E.
PDB entry 7kb6: Co-crystal structure of alpha glucosidase with compound 7
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-01
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 7kb7: THE STRUCTURE OF A SENSOR DOMAIN OF A HISTIDINE KINASE (VxrA) FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961, N239-T240 deletion mutant
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-01
Authors: Tan, K., Wu, R., Jedrzejczak, R., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Membrane Proteins of Infectious Diseases (MPID)
PDB entry 7kb8: Co-crystal structure of alpha glucosidase with compound 8
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.385 Å
Deposited: 2020-10-01
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 7kb9: THE STRUCTURE OF A SENSOR DOMAIN OF A HISTIDINE KINASE (VxrA) FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961, D238-T240 deletion mutant
Classification: SIGNALING PROTEIN
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2020-10-01
Authors: Tan, K., Wu, R., Jedrzejczak, R., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7kba: Crystal structure of the HCMV pentamer-specific Fab 2-18
Classification: ANTIVIRAL PROTEIN, IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-01
Authors: Wrapp, D., McLellan, J.S.
PDB entry 7kbb: Cryo-EM structure of the HCMV pentamer bound by Fabs 2-18 and 8I21
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human cytomegalovirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.02 Å
Deposited: 2020-10-01
Authors: Wrapp, D., McLellan, J.S.
PDB entry 7kbc: The crystal structure of the 2009/H1N1/California PA endonuclease mutant E119D (construct with truncated loop 51-72) in complex with baloxavir acid
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.25 Å
Deposited: 2020-10-02
Authors: Cuypers, M.G., Kumar, G., Slavish, J., White, S.W.
PDB entry 7kbd: Nucleosome in interphase chromosome formed in Xenopus egg extract (oligo fraction)
Classification: STRUCTURAL PROTEIN/DNA
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.38 Å
Deposited: 2020-10-02
Authors: Arimura, Y., Funabiki, H.
PDB entry 7kbe: Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-10-02
Authors: Arimura, Y., Funabiki, H.
PDB entry 7kbf: H1.8 bound nucleosome isolated from metaphase chromosome in Xenopus egg extract (oligo fraction)
Classification: DNA BINDING PROTEIN
Source organism: Xenopus laevis
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.42 Å
Deposited: 2020-10-02
Authors: Arimura, Y., Funabiki, H.
PDB entry 7kbg: Structure of Human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 20)
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.26 Å
Deposited: 2020-10-02
Authors: Klein, D.J., Liu, J.
PDB entry 7kbh: Structure of Human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 16)
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.68 Å
Deposited: 2020-10-02
Authors: Klein, D.J., Liu, J.
PDB entry 7kbi: Ricin bound to VHH antibody V5E1
Classification: TOXIN
Source organism: Ricinus communis; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 3.049 Å
Deposited: 2020-10-02
Authors: Rudolph, M.J.
PDB entry 7kbj: Co-crystal structure of alpha glucosidase with compound 9
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.21 Å
Deposited: 2020-10-02
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 7kbk: Ricin bound to VHH antibody V6E11
Classification: TOXIN
Source organism: Ricinus communis; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.091 Å
Deposited: 2020-10-02
Authors: Rudolph, M.J.
PDB entry 7kbl: Biotin Carboxylase domain of Thermophilic 2-Oxoglutarate Carboxylase bound to Bicarbonate
Classification: LIGASE
Source organism: Hydrogenobacter thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-02
Authors: Buhrman, G.K., Rose, R.B., Enriquez, P., Truong, V.
PDB entry 7kbm: Reverse Transcriptase Diabody with R83C Mutation Crystallized in C2
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-02
Authors: Chesterman, C., Arnold, E.
PDB entry 7kbn: 1.60 Angstrom resolution crystal structure of the beta-Q114A mutant of Tryptophan Synthase in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, cesium ion at the metal coordination site, and 2-aminophenol quinonoid at the enzyme beta site
Classification: LYASE/LYASE INHIBITOR
Source organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-02
Authors: Hilario, E., Dunn, M.F., Mueller, L.J.
PDB entry 7kbo: Reverse Transcriptase Diabody with S82bC, R83T Mutations Crystallized in C2
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-02
Authors: Chesterman, C., Arnold, E.
PDB entry 7kbp: Herceptin Diabody with R83T, E85C Mutations
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-02
Authors: Chesterman, C., Arnold, E.
PDB entry 7kbq: Solution NMR Structure of DE NOVO DESIGNED Rossmann 3x3 Fold Protein r3x3_bp3, Northeast Structural Genomics Consortium (NESG) Target OR689
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: SOLUTION NMR
Deposited: 2020-10-02
Authors: Liu, G., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
PDB entry 7kbr: Co-crystal structure of alpha glucosidase with compound 10
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2020-10-02
Authors: Karade, S.S., Mariuzza, R.A.
PDB entry 7kbs: Estrogen Receptor Alpha Ligand Binding Domain in Complex with Raloxifene
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.834 Å
Deposited: 2020-10-02
Authors: Fanning, S.W.
PDB entry 7kbt: Factor VIII in complex with the anti-C2 domain antibody, G99
Classification: BLOOD CLOTTING/Immune System
Source organism: Homo sapiens; Mus musculus; Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 4.15 Å
Deposited: 2020-10-02
Authors: Ronayne, E.K., Gish, J., Wilson, C., Peters, S., Spencer, H.T., Spiegel, P.C., Childers, K.C.
PDB entry 7kbu: Structure of Hevin FS-EC
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2020-10-03
Authors: Machius, M., Fan, S., Rudenko, G.
PDB entry 7kbv: Solution structure of the major MYC promoter G-quadruplex with a wild-type flanking sequence
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2020-10-03
Authors: Dickerhoff, J., Yang, D.
PDB entry 7kbw: Solution structure of the major MYC promoter G-quadruplex with a wild-type flanking in complex with NSC85697, a quinoline derivative
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2020-10-03
Authors: Dickerhoff, J., Yang, D.
PDB entry 7kbx: Solution structure of the major MYC promoter G-quadruplex in complex with NSC85697, a quinoline derivative
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2020-10-03
Authors: Dickerhoff, J., Yang, D.
PDB entry 7kby: Artificial Metalloproteins with Dinuclear Iron Centers
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2020-10-03
Authors: Miller, K.R., Follmer, A.H., Jasniewski, A.J., Sabuncu, S., Biswas, S., Albert, T., Hendrich, M.P., Moenne-Loccoz, P., Borovik, A.S.
PDB entry 7kbz: Artificial Metalloproteins with Dinuclear Iron Centers
Classification: METAL BINDING PROTEIN
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-10-03
Authors: Miller, K.R., Follmer, A.H., Jasniewski, A.J., Sabuncu, S., Biswas, S., Albert, T., Hendrich, M.P., Moenne-Loccoz, P., Borovik, A.S.
PDB entry 7kc0: Structure of the Saccharomyces cerevisiae replicative polymerase delta in complex with a primer/template and the PCNA clamp
Classification: REPLICATION
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-04
Authors: Zheng, F., Georgescu, R., Li, H., O'Donnell, M.E.
PDB entry 7kc1: Cryo-EM structure of SRR2899884.46167H+MEDI8852L fab in complex with Victoria HA
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Human immunodeficiency virus 1; Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2020-10-04
Authors: Gorman, J., Kwong, P.D.
PDB entry 7kc2: Symmetry in Yeast Alcohol Dehydrogenase 1 -Closed Form with NADH
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.67 Å
Deposited: 2020-10-04
Authors: Subramanian, R., Chang, L., Li, Z., Plapp, B.V.
PDB entry 7kc3: X-ray structure of Lfa-1 I domain collected at 273 K
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-10-05
Authors: Woldeyes, R.A., Hallenbeck, K.K., Pfaff, S.J., Lee, G., Cortez, S.V., Kelly, M.J., Akassoglou, K., Arkin, M.R., Fraser, J.S.
PDB entry 7kc4: Human WLS in complex with WNT8A
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Deposited: 2020-10-05
Authors: Nygaard, R., Jia, Y., Kim, J., Ross, D., Parisi, G., Clarke, O.B., Virshup, D.M., Mancia, F.
PDB entry 7kc5: X-ray structure of Lfa-1 I domain in complex with BMS-68852 collected at 273 K
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2020-10-05
Authors: Woldeyes, R.A., Hallenbeck, K.K., Pfaff, S.J., Lee, G., Cortez, S.V., Kelly, M.J., Akassoglou, K., Arkin, M.R., Fraser, J.S.
PDB entry 7kc6: X-ray structure of Lfa-1 I domain in complex with Lovastatin collected at 273 K
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-10-05
Authors: Woldeyes, R.A., Hallenbeck, K.K., Pfaff, S.J., Lee, G., Cortez, S.V., Kelly, M.J., Akassoglou, K., Arkin, M.R., Fraser, J.S.
PDB entry 7kc7: Biotin Carboxylase domain of Thermophilic 2-Oxoglutarate Carboxylase bound to ADP without Magnesium with disordered phosphate tail
Classification: LIGASE
Source organism: Hydrogenobacter thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-05
Authors: Buhrman, G.K., Rose, R.B., Enriquez, P., Truong, V.
PDB entry 7kc8: Salivary protein from Culex quinquefasciatus that belongs to the Cysteins and Tryptophan-Rich (CWRC) family
Classification: UNKNOWN FUNCTION
Source organism: Culex quinquefasciatus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-05
Authors: Garboczi, D.N., Gittis, A.G., Kern, O., Martin-Martin, I.
PDB entry 7kc9: Ricin bound to VHH antibody V5G1
Classification: TOXIN
Source organism: Ricinus communis; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2020-10-05
Authors: Rudolph, M.J.
PDB entry 7kcb: Symmetry in Yeast Alcohol Dehydrogenase 1 -Closed Form with NAD+ and Trifluoroethanol
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2020-10-05
Authors: Subramanian, R., Chang, L., Li, Z., Plapp, B.V., Guntupalli, S.R.
PDB entry 7kcc: Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric inhibitor AG-270
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.32 Å
Deposited: 2020-10-05
Authors: Padyana, A., Jin, L.
PDB entry 7kce: Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric inhibitor compound 2
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2020-10-05
Authors: Padyana, A., Jin, L.
PDB entry 7kcf: Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric inhibitor AGI-24512
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.1 Å
Deposited: 2020-10-05
Authors: Padyana, A., Jin, L.
PDB entry 7kcg: Salivary protein from Culex quiquefasciatus that belongs to the Cysteine and Tryptophan-Rich (CWRC) family
Classification: UNKNOWN FUNCTION
Source organism: Culex quinquefasciatus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2020-10-05
Authors: Garboczi, N.D., Gittis, A.G., Kern, O., Martin-Martin, I., Calvo, E.
PDB entry 7kch: Myosin XI-F-actin complex
Classification: CONTRACTILE PROTEIN
Source organism: Chara corallina; Gallus gallus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.33 Å
Deposited: 2020-10-05
Authors: Gong, R., Alushin, G.M.
PDB entry 7kci: DETERMINANTS OF REPRESSOR/OPERATOR RECOGNITION FROM THE STRUCTURE OF THE TRP OPERATOR BINDING SITE
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 1994-09-12
Authors: Shakked, Z., Guzikevich-Guerstein, G., Frolow, F., Rabinovich, D., Joachimiak, A., Sigler, P.B.
PDB entry 7kcj: The crystal structure of the translation initiation factor EIF4E5 from Leishmania major
Classification: TRANSLATION
Source organism: Leishmania major
Experimental method: X-RAY DIFFRACTION
Resolution: 1.997 Å
Deposited: 2020-10-05
Authors: Lima, G.B., Guimaraes, B.G.
PDB entry 7kck: Full-length human mitochondrial Hsp90 (TRAP1) with AMP-PNP
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2020-10-06
Authors: Liu, Y.X., Agard, D.A.
PDB entry 7kcl: Full-length human mitochondrial Hsp90 (TRAP1) in complex with SdhB in the presence of AMP-PNP
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.14 Å
Deposited: 2020-10-06
Authors: Liu, Y.X., Agard, D.A.
PDB entry 7kcm: Full-length human mitochondrial Hsp90 (TRAP1) in complex with SdhB in the presence of AMP-PNP
Classification: CHAPERONE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.43 Å
Deposited: 2020-10-06
Authors: Liu, Y.X., Agard, D.A.
PDB entry 7kcn: Reconstructed ancestor of HIUases and Transthyretins
Classification: UNKNOWN FUNCTION
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.46 Å
Deposited: 2020-10-06
Authors: Nagem, R.A.P., Bleicher, L., Costa, M.A.F.
PDB entry 7kco: ROR gamma in complex with SCR2 and compound 3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2020-10-06
Authors: Durbin, J.D., Guo, S.Y., Stout, S.L., Clawson, D.K.
PDB entry 7kcp: Crystal structure of Acetyl-CoA Synthetase in Complex with Adenosine-5'-propylphosphate from Coccidioides posadasii C735
Classification: LIGASE
Source organism: Coccidioides posadasii (strain C735)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15 Å
Deposited: 2020-10-07
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kcq: Symmetry in Yeast Alcohol Dehydrogenase 1 -Open Form of Apoenzyme
Classification: OXIDOREDUCTASE
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-07
Authors: Subramanian, R., Chang, L., Li, Z., Plapp, B.V., Guntupalli, S.R.
PDB entry 7kcr: Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056
Classification: VIRUS/IMMUNE SYSTEM
Source organism: Homo sapiens; Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2020-10-07
Authors: Sevvana, M., Rogers, T.F., Miller, A.S., Long, F., Klose, T., Beutler, N., Lai, Y.C., Parren, M., Walker, L.M., Buda, G., Burton, D.R., Rossmann, M.G., Kuhn, R.J.
PDB entry 7kcs: The crystal structure of 4-vinylbenzoate-bound wild-type CYP199A4
Classification: OXIDOREDUCTASE
Source organism: Rhodopseudomonas palustris (strain HaA2)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.773 Å
Deposited: 2020-10-07
Authors: Coleman, T., Bruning, J.B., Bell, S.G.
PDB entry 7kct: Crystal Structure of the Hydrogenobacter thermophilus 2-Oxoglutarate Carboxylase (OGC) Biotin Carboxylase (BC) Domain Dimer in Complex with Adenosine 5'-Diphosphate Magnesium Salt (MgADP), Adenosine 5'-Diphosphate (ADP, and Bicarbonate Anion (Hydrogen Carbonate/HCO3-)
Classification: LIGASE
Source organism: Hydrogenobacter thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2020-10-07
Authors: Buhrman, G.K., Rose, R.B., Enriquez, P., Truong, V.
PDB entry 7kcu: Joint neutron/X-ray structure of Oxyferrous Dehaloperoxidase B
Classification: OXIDOREDUCTASE
Source organism: Amphitrite ornata
Experimental method: X-RAY DIFFRACTION, NEUTRON DIFFRACTION
Deposited: 2020-10-07
Authors: Carey, L.M., Ghiladi, R.A., Meilleur, F., Myles, D.
PDB entry 7kcv: Crystal structure of S. aureus penicillin-binding protein 4 (PBP4) mutant (R200L)
Classification: HYDROLASE
Source organism: Staphylococcus aureus (strain COL)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-07
Authors: Alexander, J.A.N., Strynadka, N.C.J.
PDB entry 7kcw: Crystal structure of S. aureus penicillin-binding protein 4 (PBP4) mutant (R200L) in complex with nafcillin
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Staphylococcus aureus (strain COL)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2020-10-07
Authors: Alexander, J.A., Strynadka, N.C.
PDB entry 7kcx: Crystal structure of S. aureus penicillin-binding protein 4 (PBP4) mutant (R200L) in complex with cefoxitin
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Staphylococcus aureus (strain COL)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2020-10-07
Authors: Alexander, J.A.N., Strynadka, N.C.J.
PDB entry 7kcy: Crystal structure of S. aureus penicillin-binding protein 4 (PBP4) with cefoxitin
Classification: HYDROLASE/HYDROLASE INHIBITOR
Source organism: Staphylococcus aureus (strain COL)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2020-10-07
Authors: Alexander, J.A.N., Strynadka, N.C.J.
PDB entry 7kcz: CRYSTAL STRUCTURE OF RHESUS MACAQUE (MACACA MULATTA) IGG1 FC FRAGMENT- FC-GAMMA RECEPTOR III COMPLEX V158 MUTANT
Classification: IMMUNE SYSTEM
Source organism: Macaca mulatta
Experimental method: X-RAY DIFFRACTION
Resolution: 3.15 Å
Deposited: 2020-10-07
Authors: Tolbert, W.D., Pazgier, M.
PDB entry 7kd0: Ricin bound to VHH antibody V2C11
Classification: TOXIN
Source organism: Lama glama; Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.768 Å
Deposited: 2020-10-07
Authors: Rudolph, M.J.
PDB entry 7kd1: Apo structure of the THF riboswitch aptamer domain
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2020-10-07
Authors: Wilt, H.M., Stagno, J.R., Wang, Y.-X.
PDB entry 7kd2: Ricin bound to VHH antibody V11B2
Classification: TOXIN
Source organism: Ricinus communis; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.55 Å
Deposited: 2020-10-07
Authors: Rudolph, M.J.
PDB entry 7kd3: Structure of an HxlR/DUF24 family transcription regulator, CdTR_3200 from hypervirulent Clostridioides difficile R20291
Classification: DNA BINDING PROTEIN
Source organism: Clostridioides difficile (strain R20291)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2020-10-07
Authors: Menon, S.K., Isom, C.E., Karr, E.A.
PDB entry 7kd4: Structure of the C-terminal domain of the Menangle virus phosphoprotein (residues 329 -388), fused to MBP. Space group P21.
Classification: VIRAL PROTEIN
Source organism: Menangle virus; Serratia sp. (strain FS14)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.312 Å
Deposited: 2020-10-08
Authors: Webby, M.N., Kingston, R.L.
PDB entry 7kd5: Structure of the C-terminal domain of the Menangle virus phosphoprotein (residues 329 -388), fused to MBP. Space group P212121
Classification: VIRAL PROTEIN
Source organism: Menangle virus; Serratia sp. (strain FS14)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.551 Å
Deposited: 2020-10-08
Authors: Webby, M.N., Kingston, R.L.
PDB entry 7kd6: Insulin Receptor L1-CR plus alphaCT fragment in co-complex with Fv 83-7 and single-chain insulin SCI-b
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2020-10-08
Authors: Lawrence, M.C., Menting, J.G.
PDB entry 7kd7: Crystal structure of human NatD (NAA40) bound to a bisubstrate analogue
Classification: TRANSFERASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2020-10-08
Authors: Deng, S., Marmorstein, R.
PDB entry 7kd8: TtgR C137I I141W M167L F168Y mutant in complex with resveratrol
Classification: TRANSCRIPTION
Source organism: Pseudomonas putida
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2020-10-08
Authors: Bingman, C.A., Nishikawa, K.K., Smith, R.W., Raman, S.
PDB entry 7kd9: Crystal Structure of Gallic Acid Decarboxylase from Arxula adeninivorans
Classification: LYASE
Source organism: Blastobotrys adeninivorans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.94 Å
Deposited: 2020-10-08
Authors: Zeug, M., Markovic, N., Iancu, C.V., Tripp, J., Oreb, M., Choe, J.
PDB entry 7kda: Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric inhibitor compound 34
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2020-10-08
Authors: Padyana, A., Jin, L.
PDB entry 7kdb: Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric inhibitor compound 35
Classification: TRANSFERASE/Inhibitor
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.24 Å
Deposited: 2020-10-08
Authors: Padyana, A., Jin, L.
PDB entry 7kdc: The complex between RhoD and the Plexin B2 RBD
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2020-10-08
Authors: Kuo, Y., Wang, Y., Zhang, x.
PDB entry 7kdd: HCMV postfusion gB in complex with SM5-1 Fab
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Human cytomegalovirus (strain Towne)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2020-10-08
Authors: Liu, Y., Heim, P.K., Che, Y., Chi, X., Qiu, X., Han, S., Dormitzer, P.R., Yang, X.
PDB entry 7kde: BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human gp120-gp41 interface antibody 8ANC195
Classification: VIRAL PROTEIN/Immune System
Source organism: Homo sapiens; Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2020-10-08
Authors: Barnes, C.O., Bjorkman, P.J.
PDB entry 7kdf: Structure of Stu2 Bound to dwarf Ndc80c
Classification: CELL CYCLE
Source organism: Saccharomyces cerevisiae; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.72 Å
Deposited: 2020-10-08
Authors: Zahm, J.A., Stewart, M.G., Miller, M.P., Harrison, S.C.
PDB entry 7kdg: SARS-CoV-2 RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.01 Å
Deposited: 2020-10-08
Authors: Gobeil, S., Acharya, P.
PDB entry 7kdh: SARS-CoV-2 RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2020-10-08
Authors: Gobeil, S., Acharya, P.
PDB entry 7kdi: SARS-CoV-2 D614G 3 RBD down Spike Protein Trimer fully cleaved by furin without the P986-P987 stabilizing mutations (S-RRAR-D614G)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2020-10-08
Authors: Gobeil, S., Acharya, P.
PDB entry 7kdj: SARS-CoV-2 D614G 1-RBD-up Spike Protein Trimer fully cleaved by furin without the P986-P987 stabilizing mutations (S-RRAR-D614G)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Deposited: 2020-10-08
Authors: Gobeil, S., Acharya, P.
PDB entry 7kdk: SARS-CoV-2 D614G 3 RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-10-08
Authors: Gobeil, S., Acharya, P.
PDB entry 7kdl: SARS-CoV-2 D614G 1-RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2020-10-08
Authors: Gobeil, S., Acharya, P.
PDB entry 7kdm: Ricin bound to VHH antibody V5G6
Classification: TOXIN
Source organism: Lama glama; Ricinus communis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.301 Å
Deposited: 2020-10-08
Authors: Rudolph, M.J.
PDB entry 7kdn: Crystal structure of Acetyl-CoA Synthetase in Complex with Adenosine-5'-propylphosphate from Aspergillus fumigatus
Classification: LIGASE
Source organism: Aspergillus fumigatus Af293
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-09
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kdo: Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-73
Classification: TRANSFERASE/INHIBITOR
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2020-10-09
Authors: Shaw, G.X., Shi, G., Ji, X.
PDB entry 7kdp: HCMV prefusion gB in complex with fusion inhibitor WAY-174865
Classification: VIRAL PROTEIN/INHIBITOR
Source organism: Human cytomegalovirus (strain Towne)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2020-10-09
Authors: Liu, Y., Heim, P.K., Che, Y., Chi, X., Qiu, X., Han, S., Dormitzer, P.R., Yang, X.
PDB entry 7kdq: StigA15
Classification: ANTIMICROBIAL PROTEIN
Experimental method: SOLUTION NMR
Deposited: 2020-10-09
Authors: Rodrigues, S.C.S., Araujo, R.M., Resende, J.M., Pedrosa, M.F.F.
PDB entry 7kdr: Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-75
Classification: TRANSFERASE/INHIBITOR
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.488 Å
Deposited: 2020-10-09
Authors: Shaw, G.X., Shi, G., Ji, X.
PDB entry 7kds: Crystal structure of Acetyl-CoA synthetase 2 in complex with Adenosine-5'-propylphosphate from Candida albicans
Classification: LIGASE
Source organism: Candida albicans (strain SC5314 / ATCC MYA-2876)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-10-09
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kdt: Human Tom70 in complex with SARS CoV2 Orf9b
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å
Deposited: 2020-10-09
Authors: QCRG Structural Biology Consortium
PDB entry 7kdu: Ricin bound to VHH antibody V5E4
Classification: TOXIN
Source organism: Ricinus communis; Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 2.809 Å
Deposited: 2020-10-09
Authors: Rudolph, M.J.
PDB entry 7kdv: Murine core lysosomal multienzyme complex (LMC) composed of acid beta-galactosidase (GLB1) and protective protein cathepsin A (PPCA, CTSA)
Classification: HYDROLASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.59 Å
Deposited: 2020-10-09
Authors: Gorelik, A., Illes, K., Hasan, S.M.N., Nagar, B., Mazhab-Jafari, M.T.
PDB entry 7kdw: Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to Compound 6 (HZ01052)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2020-10-09
Authors: Chan, A., Schonbrunn, E.
PDB entry 7kdx: Crystal structure of Streptomyces tokunonesis TokK with hydroxycobalamin, 5'-deoxyadenosine, and methionine
Classification: TRANSFERASE
Source organism: Streptomyces tokunonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.791 Å
Deposited: 2020-10-09
Authors: Knox, H.L., Booker, S.J., Boal, A.K.
PDB entry 7kdy: Crystal structure of Streptomyces tokunonesis TokK with hydroxycobalamin, 5'-deoxyadenosine, methionine, and (2R)-pantetheinylated carbapenam
Classification: TRANSFERASE
Source organism: Streptomyces tokunonensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.939 Å
Deposited: 2020-10-09
Authors: Knox, H.L., Booker, S.J., Boal, A.K.
PDB entry 7kdz: Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to TP-238
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.54 Å
Deposited: 2020-10-09
Authors: Chan, A., Schonbrunn, E.
PDB entry 7ke0: HIV-1 Integrase catalytic core domain complexed with allosteric inhibitor STP03-0404
Classification: TRANSFERASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.19 Å
Deposited: 2020-10-09
Authors: Lindenberger, J.J., Kvaratskhelia, M.
PDB entry 7ke1: Factor H enhancing human antibody fragment (Fab) to meningococcal Factor H binding protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2020-10-09
Authors: Beernink, P.T., Sands, N.
PDB entry 7ke2: Crystal structure of Staphylococcus aureus ketol-acid reductoisomerase in complex with Mg2+ and NSC116565
Classification: ISOMERASE, Oxidoreductase
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2020-10-09
Authors: Kurz, J.L., Patel, K.P., Guddat, L.W.
PDB entry 7ke3: Heavy chain ferritin with C-terminal EBNA1 epitope
Classification: OXIDOREDUCTASE
Source organism: Epstein-Barr virus (strain B95-8); Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2020-10-10
Authors: Pederick, J.L., Bruning, J.B.
PDB entry 7ke4: SARS-CoV-2 D614G 3 RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G Sub-class)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.21 Å
Deposited: 2020-10-10
Authors: Gobeil, S., Acharya, P.
PDB entry 7ke5: Heavy chain ferritin with N-terminal EBNA1 epitope
Classification: OXIDOREDUCTASE
Source organism: Epstein-Barr virus (strain B95-8); Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-10
Authors: Pederick, J.P., Bruning, J.B.
PDB entry 7ke6: SARS-CoV-2 D614G 3 RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G sub-classification)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2020-10-10
Authors: Gobeil, S., Acharya, P.
PDB entry 7ke7: SARS-CoV-2 D614G 3-RBD-down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G Sub-Classification)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2020-10-10
Authors: Gobeil, S., Acharya, P.
PDB entry 7ke8: SARS-CoV-2 D614G 3 RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G sub-classification)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.26 Å
Deposited: 2020-10-10
Authors: Gobeil, S., Acharya, P.
PDB entry 7ke9: SARS-CoV-2 D614G 1-RBD-up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G sub-classification)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2020-10-10
Authors: Gobeil, S., Acharya, P.
PDB entry 7kea: SARS-CoV-2 D614G 1-RBD-up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G sub classification)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2020-10-10
Authors: Gobeil, S., Acharya, P.
PDB entry 7keb: SARS-CoV-2 D614G 1RBD up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G sub-classification)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å
Deposited: 2020-10-10
Authors: Gobeil, S., Acharya, P.
PDB entry 7kec: SARS-CoV-2 D614G 1-RBD-up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G Sub-Classification)
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.84 Å
Deposited: 2020-10-10
Authors: Gobeil, S., Acharya, P.
PDB entry 7ked: RNA polymerase II elongation complex with unnatural base dTPT3
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2020-10-10
Authors: Oh, J., Wang, W., Wang, D.
PDB entry 7kee: RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å
Deposited: 2020-10-10
Authors: Oh, J., Wang, D.
PDB entry 7kef: RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state
Classification: TRANSCRIPTION/DNA/RNA
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.89 Å
Deposited: 2020-10-10
Authors: Oh, J., Wang, D.
PDB entry 7keg: Crystal structure from SARS-COV2 NendoU NSP15
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-10-10
Authors: Godoy, A.S., Nakamura, A.M., Pereira, H.M., Noske, G.D., Gawriljuk, V.O., Fernandes, R.S., Oliveira, K.I.Z., Oliva, G.
PDB entry 7keh: Crystal structure from SARS-CoV-2 NendoU NSP15
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2020-10-10
Authors: Godoy, A.S., Nakamura, A.M., Pereira, H.M., Noske, G.D., Gawriljuk, V.O., Fernandes, R.S., Oliveira, K.I.Z., Oliva, G.
PDB entry 7kei: DQA1*01:02/DQB1*06:02 in complex with a hemagglutinin peptide from the H1N1 pandemic flu virus.
Classification: IMMUNE SYSTEM
Source organism: H1N1 subtype; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2020-10-10
Authors: Birtley, J.R., Stern, L.J., Mellins, E.D., Jiang, W.
PDB entry 7kej: BDBV-289 bound to EBOV GPdMuc Makona
Classification: VIRAL PROTEIN/Immune System
Source organism: Ebola virus; Homo sapiens; Zaire ebolavirus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2020-10-11
Authors: Murin, C.D., Ward, A.B.
PDB entry 7kek: Structure of the free outer-arm dynein in pre-parallel state
Classification: MOTOR PROTEIN
Source organism: Tetrahymena thermophila
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2020-10-11
Authors: Rao, Q., Zhang, K.
PDB entry 7kel: Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59K mutant with pyruvate bound in the active site
Classification: LYASE
Source organism: Campylobacter jejuni
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2020-10-11
Authors: Saran, S., Sanders, D.A.R.
PDB entry 7kem: Crystallographic structure of L,D-transpeptidase 2 from Mycobacterium tuberculosis
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2020-10-11
Authors: Libreros, G.A., Dias, M.V.B.
PDB entry 7ken: Protein Tyrosine Phosphatase 1B, D289A mutant, apo state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2020-10-11
Authors: Fox, J.M., Hongdusit, A.
PDB entry 7keo: Crystal structure of K29-linked di-ubiquitin in complex with synthetic antigen binding fragment
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2020-10-11
Authors: Yu, Y., Zheng, Q., Erramilli, S., Pan, M., Kossiakoff, A., Liu, L., Zhao, M.
PDB entry 7kep: avibactam-CDD-1 2 minute complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2020-10-11
Authors: Smith, C.A., Vakulenko, S.B., Stewart, N.K., Toth, M.
PDB entry 7keq: avibactam-CDD-1 6 minute complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-11
Authors: Smith, C.A., Vakulenko, S.B., Stewart, N.K., Toth, M.
PDB entry 7ker: avibactam-CDD-1 45 minute complex
Classification: HYDROLASE/INHIBITOR
Source organism: Clostridioides difficile
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2020-10-12
Authors: Smith, C.A., Vakulenko, S.B., Stewart, N.K., Toth, M.
PDB entry 7kes: Crystal structure of meta-AAC0038, an environmental aminoglycoside resistance enzyme, mutant H168A in complex with apramycin and CoA
Classification: TRANSFERASE/ANTIBIOTIC
Source organism: uncultured bacterium
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2020-10-12
Authors: Stogios, P.J., Skarina, T., Michalska, K., Xu, Z., Yim, V., Savchenko, A., Joachimiak, A., Satchell, K.J., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7ket: Factor H enhancing human antibody fragment (Fab) to meningococcal Factor H binding protein
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Neisseria meningitidis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2020-10-12
Authors: Beernink, P.T., Sands, N.
PDB entry 7keu: Cryo-EM structure of the Caspase-1-CARD:ASC-CARD octamer
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-10-12
Authors: Hollingsworth, L.R., David, L., Li, Y., Ruan, J., Wu, H.
PDB entry 7kev: PCSK9 in complex with a cyclic peptide LDLR disruptor
Classification: LIPID TRANSPORT, HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2020-10-12
Authors: Spraggon, G., Chopra, R.
PDB entry 7kew: Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-43
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Bundibugyo ebolavirus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.16 Å
Deposited: 2020-10-13
Authors: Murin, C.D., Ward, A.B.
PDB entry 7kex: Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Ebola virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.25 Å
Deposited: 2020-10-13
Authors: Murin, C.D., Ward, A.B.
PDB entry 7key: Protein Tyrosine Phosphatase 1B, Apo
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.771 Å
Deposited: 2020-10-13
Authors: Battaile, K.P., Chirgadze, Y., Ruzanov, M., Romanov, V., Lam, K., Gordon, R., Lin, A., Lam, R., Pai, E., Chirgadze, N.
PDB entry 7kez: Crystal structure of bH1 Fab variant (CDR H3 loop design 16_0325) in complex with VEGF
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.31 Å
Deposited: 2020-10-13
Authors: Shi, R., Manenda, M.S., Picard, M.-E.
PDB entry 7kf0: Crystal structure of bH1 Fab variant (CDR H3 loop design 13_0346) in complex with VEGF
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2020-10-13
Authors: Shi, R., Picard, M.-E.
PDB entry 7kf1: Crystal structure of bH1 Fab variant (CDR H3 loop design 14_0130) in complex with VEGF
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-10-13
Authors: Shi, R., Picard, M.-E., Manenda, M.S.
PDB entry 7kf3: Crystal structure of GDP-mannose 4,6-dehydratase from Brucella abortus (strain 2308) in complex with Guanosine-diphosphate-rhamnose
Classification: LYASE
Source organism: Brucella abortus (strain 2308)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35 Å
Deposited: 2020-10-13
Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 7kf4: Crystal structure from SARS-CoV-2 NendoU NSP15
Classification: VIRAL PROTEIN, HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2020-10-13
Authors: Godoy, A.S., Nakamura, A.M., Pereira, H.M., Noske, G.D., Gawriljuk, V.O., Fernandes, R.S., Oliveira, K.I.Z., Oliva, G.
PDB entry 7kf5: Cryo-electron microscopy structure of the heavy metal efflux pump CusA in the symmetric closed state
Classification: MEMBRANE PROTEIN, TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2020-10-13
Authors: Moseng, M.A.
PDB entry 7kf6: Cryo-electron microscopy structure of the heavy metal efflux pump CusA in a homogeneous binding copper(1) state
Classification: MEMBRANE PROTEIN, TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2020-10-13
Authors: Moseng, M.A.
PDB entry 7kf7: Cryo-electron microscopy structure of the heavy metal efflux pump CusA in a heterogeneous 1 open and 2 closed protomer conformation
Classification: MEMBRANE PROTEIN/ TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2020-10-13
Authors: Moseng, M.A.
PDB entry 7kf8: Cryo-electron microscopy structure of the heavy metal efflux pump CusA in a heterogeneous 2 open and 1 closed protomer conformation
Classification: MEMBRANE PROTEIN, TRANSPORT PROTEIN
Source organism: Escherichia coli
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2020-10-13
Authors: Moseng, M.A.
PDB entry 7kf9: Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Ebola virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2020-10-13
Authors: Murin, C.D., Ward, A.B.
PDB entry 7kfa: PCSK9 in complex with PCSK9i a 13mer cyclic peptide LDLR disruptor
Classification: LIPID TRANSPORT, HYDROLASE
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2020-10-13
Authors: Chopra, R., Xu, M., Spraggon, G.
PDB entry 7kfb: Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-442
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Ebola virus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2020-10-13
Authors: Murin, C.D., Ward, A.B.
PDB entry 7kfe: Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Bundibugyo ebolavirus; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.6 Å
Deposited: 2020-10-13
Authors: Murin, C.D., Ward, A.B.
PDB entry 7kff: Crystal structure of TrmD tRNA (guanine-N1)-methyltransferase from Corynebacterium diphtheriae in complex with SAH
Classification: TRANSFERASE
Source organism: Corynebacterium diphtheriae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2020-10-13
Authors: Michalska, K., Tanase, L., Maltseva, N., Kim, Y., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB entry 7kfg: Antibody Fab BDBV-289
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.002 Å
Deposited: 2020-10-13
Authors: Murin, C.D., Bruhn, J.F., Ward, A.B.