LiteFold/PDB huggingface dataset:
PDB entry 9l08: Cyclic Trimer of Helix-Linked Cytochrome c555
Classification: ELECTRON TRANSPORT
Source organism: Aquifex aeolicus VF5
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-12-12
Authors: Novientri, G., Mashima, T., Matsuura, H., Ogata, H., Hirota, S.
PDB entry 9l09: SARS-CoV-2 C-RTC with 13-TP
Classification: VIRAL PROTEIN/RNA
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-12-12
Authors: Huang, Y.C., Liang, L., Liu, Y.X., Yan, L.M., Lou, Z.Y., Rao, Z.H.
PDB entry 9l0b: structure of MCT2-embigin complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-12-12
Authors: Xu, B., Wang, Y.
PDB entry 9l0c: structure of MCT2-embigin-AR-C155858 complex
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-12-12
Authors: Xu, B., Wang, Y.
PDB entry 9l0d: Cryo-EM structure of the human MON1A/CCZ1/C18orf8 complex
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-12-12
Authors: Tang, Y., Han, Y., Zhang, Y., Pan, L.
PDB entry 9l0e: Cryo-EM structure of bacteriophage T1 stopper-tail terminator
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-12-12
Authors: Chen, Y., Liu, H.R.
PDB entry 9l0f: Structure of flexible tail tube of bacteriophage T1
Classification: VIRAL PROTEIN
Source organism: Escherichia phage T1
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å
Deposited: 2024-12-12
Authors: Chen, Y., Liu, H.R.
PDB entry 9l0h: Structure of JR14a bound mouse C3aR in complex with Go
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.57 Å
Deposited: 2024-12-12
Authors: Banerjee, R., Yadav, M.K., Ganguly, M., Mishra, S., Dalal, A., Shukla, A.K.
PDB entry 9l0i: Cryo-EM structure of human lipid phosphate phosphatase 1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.61 Å
Deposited: 2024-12-12
Authors: Yang, M., Qian, H.W.
PDB entry 9l0k: Cryo-EM structure of PSI-11ACPIs from Rhodomonas sp. NIES-2332 at 2.14 angstrom resolution
Classification: PHOTOSYNTHESIS
Source organism: Rhodomonas sp. NIES-2332
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.14 Å
Deposited: 2024-12-12
Authors: Zhang, W.Y., Akita, F., Shen, J.R.
PDB entry 9l0m: Structure of gain-of-function polycystin-1/polycystin-2 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2024-12-12
Authors: Chen, M.Y., Su, Q., Chen, M.Y., Su, Q.
PDB entry 9l0n: The crystal structure of the beta-glucosidase Ks5A7
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-12-12
Authors: Xie, W., Yang, N.
PDB entry 9l0o: Cryo-EM structure of human lipid phosphate phosphatase 1 complexed with LPA
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-12-12
Authors: Yang, M., Qian, H.W.
PDB entry 9l0p: Structure of R&R Chitin-binding domain bound to Chitin.
Classification: STRUCTURAL PROTEIN
Source organism: Ostrinia furnacalis
Experimental method: SOLID-STATE NMR
Deposited: 2024-12-12
Authors: Hu, S.F., Li, J., Shi, C.W.
PDB entry 9l0q: The crystal structure of the beta-glucosidase Ks5A7
Classification: HYDROLASE
Source organism: metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-12-12
Authors: Xie, W., Yang, N.
PDB entry 9l0r: Streptococcus agalactiae GOLLD RNA dodecamer
Classification: RNA
Source organism: Streptococcus agalactiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.72 Å
Deposited: 2024-12-12
Authors: Peng, X., Wang, L., Su, Z.
PDB entry 9l0s: Cryo-EM structure of human lipid phosphate phosphatase 1 complexed with VO4
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.47 Å
Deposited: 2024-12-12
Authors: Yang, M., Qian, H.W.
PDB entry 9l0t: Structure of WDR5 in complex with WIN motif containing RBM15
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-12-12
Authors: Xu, L., Yang, Y.
PDB entry 9l0u: Cryo-EM structure of human lipid phosphate phosphatase 1 complexed with PO4.MAG
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.28 Å
Deposited: 2024-12-13
Authors: Yang, M., Qian, H.W.
PDB entry 9l0v: Structure of WDR5 in complex with WIN motif containing ZSCAN10
Classification: NUCLEAR PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-12-13
Authors: Xu, L., Yang, Y.
PDB entry 9l0w: Structure of gain-of-function polycystin-1/polycystin-2 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.69 Å
Deposited: 2024-12-13
Authors: Chen, M.Y., Su, Q., Shi, Y.G.
PDB entry 9l0x: Cryo-EM structure of E.coli transcription initiation complex with Escherichia phage Mu late transcription activator C
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli (strain K12); Escherichia phage Mu; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å
Deposited: 2024-12-13
Authors: Lin, W., Feng, Y.
PDB entry 9l0y: Cryo-EM structure of E.coli transcription initiation complex with Escherichia phage Mu middle transcription activator Mor
Classification: TRANSCRIPTION/DNA
Source organism: Escherichia coli (strain K12); Escherichia phage Mu; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.78 Å
Deposited: 2024-12-13
Authors: Lin, W., Feng, Y., Shi, J.
PDB entry 9l10: Crystal structure of flavin reductase (StnC) complexed with FMN
Classification: FLAVOPROTEIN
Source organism: Streptomyces albus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.61 Å
Deposited: 2024-12-13
Authors: Xie, X., Lin, S.
PDB entry 9l11: Crystal structure of flavin reductase (StnC) complexed with FAD
Classification: FLAVOPROTEIN
Source organism: Streptomyces albus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.82 Å
Deposited: 2024-12-13
Authors: Xie, X., Lin, S.
PDB entry 9l12: Crystal structure of Cas12h ternary complex
Classification: DNA BINDING PROTEIN
Source organism: unidentified; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.81 Å
Deposited: 2024-12-13
Authors: Xiang, W., Chen, J., Liu, L.
PDB entry 9l13: The crystal structure of SARS-CoV-2 Main protease in complex with an iso-quinoline-derived inhibitor FD6-31
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-12-13
Authors: Zhong, B.S., Luo, G., Wang, G., Lu, W.Y.
PDB entry 9l14: Crystal structure of the monobody CL-1 in complex with the Escherichia coli adenylate kinase
Classification: PROTEIN BINDING
Source organism: Escherichia coli (strain K12); synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 1.86 Å
Deposited: 2024-12-13
Authors: Nakamura, I., Amesaka, H., Tanaka, S.I., Matsuo, T.
PDB entry 9l15: Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2024-12-13
Authors: Qiu, Y.N., Sun, L.
PDB entry 9l16: A local Cryo_EM structure of CCR7 complex with CCL21
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-12-13
Authors: Duan, J., Yuan, Q., Cao, Y.
PDB entry 9l19: Structure of human apo Taurine Transporter in the inward-open conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-12-14
Authors: Wu, J.X., Qi, Y.
PDB entry 9l1a: Structure of human apo Taurine Transporter in the inward-occluded conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Deposited: 2024-12-14
Authors: Wu, J.X., Qi, Y.
PDB entry 9l1b: Structure of taurine-bound human Taurine Transporter in the inward-occluded conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-12-14
Authors: Wu, J.X., Qi, Y.
PDB entry 9l1c: Structure of beta-alanine-bound human Taurine Transporter in the inward-occluded conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2024-12-14
Authors: Wu, J.X., Qi, Y.
PDB entry 9l1d: Structure of piperidine-4-sulfonic acid-bound human Taurine Transporter in the inward-open conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.24 Å
Deposited: 2024-12-14
Authors: Wu, J.X., Qi, Y.
PDB entry 9l1e: Structure of piperidine-4-sulfonic acid-bound human Taurine Transporter in the inward-occluded conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2024-12-14
Authors: Wu, J.X., Qi, Y.
PDB entry 9l1f: Crystal structure of PpRib7 in complex NADPH (P1 form)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Komagataella pastoris
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-12-14
Authors: Chen, S.C.
PDB entry 9l1h: Crystal structure of PpRib7
Classification: BIOSYNTHETIC PROTEIN
Source organism: Komagataella pastoris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2024-12-14
Authors: Chen, S.C.
PDB entry 9l1i: Crystal structure of PpRib7 in complex with NADPH (P212121 form)
Classification: BIOSYNTHETIC PROTEIN
Source organism: Komagataella pastoris
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2024-12-14
Authors: Chen, S.C.
PDB entry 9l1j: sdAbB YERLA mutant
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2024-12-14
Authors: Caaveiro, J.M.M., Uto, Y., Tsumoto, K.
PDB entry 9l1k: sdAbA YERLS mutant
Classification: IMMUNE SYSTEM
Source organism: Vicugna pacos
Experimental method: X-RAY DIFFRACTION
Resolution: 1.57 Å
Deposited: 2024-12-14
Authors: Caaveiro, J.M.M., Fernandez-Perez, J., Tsumoto, K.
PDB entry 9l1l: Structure of anti-HEL AiTab
Classification: PROTEIN BINDING
Source organism: Gallus gallus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-12-15
Authors: Kawakami, K., Yonekura, K.
PDB entry 9l1m: MMMKPD2 - low complexity region of LMP
Classification: PROTEIN FIBRIL
Experimental method: SOLUTION NMR
Deposited: 2024-12-15
Authors: Futagawa, K., Suzuki, M.
PDB entry 9l1n: Structure of Western equine encephalitis virus 71V1658 strain VLP in complex with human PCDH10 EC1
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2024-12-15
Authors: Cao, D., Ma, B., Cao, Z., Zhang, X., Xiang, Y.
PDB entry 9l1o: Cryo-EM structure of the ICT01-BTN3A1/BTN3A2 complex, local refinement
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2024-12-15
Authors: Xin, W.Z., Huang, B.D., Zhou, Q.
PDB entry 9l1p: Cryo-EM structure of the ICT01-BTN2A1/BTN3A1/BTN3A2 complex, local refinement
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-12-15
Authors: Xin, W.Z., Huang, B.D., Zhou, Q.
PDB entry 9l1q: Cryo-EM structure of the ICT01-BTN2A1/BTN3A1/BTN3A2 complex (2 fabs)
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2024-12-15
Authors: Xin, W.Z., Huang, B.D., Zhou, Q.
PDB entry 9l1r: Crystal structure of AnAE in apo form, a fungal GDSL-Acetylesterase with acetylcholinesterase-like activity from Aspergillus niger
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-12-15
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l1s: Structure of the HER2 (S310F) - pertuzumab (T30S/D31A) complex
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-12-15
Authors: Xu, L., Guo, J.
PDB entry 9l1t: Crystal structure of AnAE in complex with 2-Morpholinoethanesulphonic acid
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-12-16
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l1u: Pentraxin Domain of PTX3 Dimer, Conformation 2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.3 Å
Deposited: 2024-12-16
Authors: Guo, H.H., Zhang, H.W.
PDB entry 9l1v: Solution structure of holo Acyl carrier protein 2 (ApeF) of aryl polyene biosynthesis from Acinetobacter baumannii
Classification: BIOSYNTHETIC PROTEIN
Source organism: Acinetobacter baumannii
Experimental method: SOLUTION NMR
Deposited: 2024-12-16
Authors: Lee, C., Yoo, S., Kim, Y.
PDB entry 9l1w: 3-phenylpropionate bound dioxygenase HcaE-HcaF
Classification: ELECTRON TRANSPORT
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-12-16
Authors: Jiang, W.X., Wu, M., Cheng, X.Q., Ma, L.X., Xing, Q.
PDB entry 9l1x: hDEK-nucleosome complex (conformation 1)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å
Deposited: 2024-12-16
Authors: Liu, Y., Wang, C., Huang, H.
PDB entry 9l1y: Vitamin K-dependent gamma-carboxylase apo status
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Deposited: 2024-12-16
Authors: Yao, D., Wu, K., Lan, P.
PDB entry 9l20: cryo-EM structure of Vitamin K-dependent gamma-carboxylase complexed with anisindione
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å
Deposited: 2024-12-16
Authors: Yao, D., Wu, K., Lan, P.
PDB entry 9l21: cryo-EM structure of Vitamin K-dependent gamma-carboxylase complexed with factor IX
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-12-16
Authors: Yao, D., Wu, K., Lan, P.
PDB entry 9l22: hDEK-nucleosome complex (conformation 2)
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-12-16
Authors: Liu, Y., Wang, C., Huang, H.
PDB entry 9l23: cryo-EM structure of Vitamin K-dependent gamma-carboxylase complexed with Osteocalcin
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2024-12-16
Authors: Yao, D., Wu, K., Lan, P.
PDB entry 9l24: cryo-EM structure of Vitamin K-dependent gamma-carboxylase complexed with Matrix Gla protein
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-12-16
Authors: Yao, D., Wu, K., Lan, P.
PDB entry 9l25: cryo-EM structure of Vitamin K-dependent gamma-carboxylase complexed with factor IX(Gla)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.41 Å
Deposited: 2024-12-16
Authors: Yao, D., Wu, K., Lan, P.
PDB entry 9l26: Octamer Msp1 from S.cerevisiae(with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Deposited: 2024-12-16
Authors: Simin, W., Chengdong, H., Xuan, C.
PDB entry 9l27: Crystal structure of AnAE in complex with acetate
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2024-12-16
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l29: YdiU in complex with NAD, short soaking experiment
Classification: LYASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2024-12-16
Authors: Liu, K., Zhang, T., Wang, T., Xiang, S.
PDB entry 9l2a: Crystal structure of AnAE-N267D mutant
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2024-12-16
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l2b: Crystal structure of AnAE in complex with carbaryl
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-12-16
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l2c: Crystal structure of AnAE-N267D mutant in complex with acetate
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l2d: Structure of SARM1 bound to M1 in the intermediate state 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2024-12-17
Authors: Huang, Y., Zhang, J., Zheng, S., Wang, X.
PDB entry 9l2e: Structure of SARM1 bound to M1 in the intermediate state 2
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.46 Å
Deposited: 2024-12-17
Authors: Huang, Y., Zhang, J., Zheng, S., Wang, X.
PDB entry 9l2f: Structure of SARM1 bound to M1 and 1AD in the active state
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Deposited: 2024-12-17
Authors: Huang, Y., Zhang, J., Zheng, S., Wang, X.
PDB entry 9l2g: Structure of SARM1 2C-mutant bound to M1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.27 Å
Deposited: 2024-12-17
Authors: Huang, Y., Zhang, J., Zheng, S., Wang, X.
PDB entry 9l2h: Crystal structure of AnAE-N267D mutant in complex with paraoxon
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l2i: Cryo-EM structure of soluble methane monooxygenase hydroxylase from Methylosinus sporium 5
Classification: OXIDOREDUCTASE
Source organism: Methylosinus sporium
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å
Deposited: 2024-12-17
Authors: Hwang, Y., Pozharski, E., Lee, S.J.
PDB entry 9l2j: Crystal structure of AnAE-S34A mutant
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l2k: The crystal structure of SFTSV Gn and SD22 antibody complex
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe fever with thrombocytopenia syndrome virus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.78 Å
Deposited: 2024-12-17
Authors: Shi, W.F., Quan, C.S., Qi, J.X.
PDB entry 9l2l: Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-12-17
Authors: Qiu, Y.N., Sun, L.
PDB entry 9l2m: Crystal structure of AnAE-S34A mutant in complex with acetate
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.53 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l2n: Crystal structure of Cytochalasin D bound to a filamentous conformation actin
Classification: CYTOSOLIC PROTEIN
Source organism: Gallus gallus; Physarum polycephalum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-12-17
Authors: Takeda, S., Maeda, Y., Fujiwara, I.
PDB entry 9l2p: Crystal structure of AnAE-S34A mutant in complex with propionic acid
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l2q: Crystal structure of anti-CRISPR protein AcrIE7
Classification: ANTIVIRAL PROTEIN
Source organism: Streptococcus macedonicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.054 Å
Deposited: 2024-12-17
Authors: Zhang, H., Liu, Z.
PDB entry 9l2r: Crystal structure of the SeMet-derived C-terminal of viral responsive protein 15 (PmVRP15) from black tiger shrimp Penaeus monodon
Classification: UNKNOWN FUNCTION
Source organism: Penaeus monodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-17
Authors: Laohawutthichai, P., Kim, S.-Y., Chek, M.F., Krusong, K., Hakoshima, T.
PDB entry 9l2s: Cryo-EM structure of amyloid peptide-silk block protein fibril, Type 2
Classification: PROTEIN FIBRIL
Source organism: Latrodectus hesperus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2024-12-17
Authors: Zhang, Y.L., Dai, B.
PDB entry 9l2w: Crystal structure of the C-terminal of viral responsive protein 15 (PmVRP15) from black tiger shrimp Penaeus monodon
Classification: UNKNOWN FUNCTION
Source organism: Penaeus monodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2024-12-17
Authors: Laohawutthichai, P., Kim, S.-Y., Chek, M.F., Krusong, K., Hakoshima, T.
PDB entry 9l2x: Zn-Carbonic Anhydrase II complexed with 3NPA under 15 atm CO2
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.14 Å
Deposited: 2024-12-17
Authors: Kim, C.U., Kim, J.K.
PDB entry 9l2y: Zn-Carbonic Anhydrase II complexed with 3NPA at 90 K
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-12-17
Authors: Kim, C.U., Kim, J.K.
PDB entry 9l2z: Zn-Carbonic Anhydrase II complexed with 3NPA at 120 K
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-12-17
Authors: Kim, C.U., Kim, J.K.
PDB entry 9l30: Zn-Carbonic Anhydrase II complexed with 3NPA at 140 K
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-12-17
Authors: Kim, C.U., Kim, J.K.
PDB entry 9l31: Zn-Carbonic Anhydrase II complexed with 3NPA at 160 K
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-12-17
Authors: Kim, C.U., Kim, J.K.
PDB entry 9l32: Zn-Carbonic Anhydrase II complexed with 3NPA at 180 K
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2024-12-17
Authors: Kim, C.U., Kim, J.K.
PDB entry 9l33: Zn-Carbonic Anhydrase II complexed with 3NPA at 200 K
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.35 Å
Deposited: 2024-12-17
Authors: Kim, C.U., Kim, J.K.
PDB entry 9l34: Crystal structure of AnAE-H270A mutant
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.71 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l35: Crystal structure of C45G9.5 protein from Caenorhabditis elegans
Classification: PROTEIN BINDING
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.597 Å
Deposited: 2024-12-17
Authors: Ouyang, P.F., Tong, J.S.
PDB entry 9l37: Crystal structure of AnAE-N267D-A101F mutant
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l39: Crystal structure of AnAE-N267D-I139D mutant
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.49 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l3a: Crystal structure of AnAE-N267D-Y102W mutant
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2024-12-17
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l3b: Crystal structure of AnAE-N267D-Y269W mutant
Classification: HYDROLASE
Source organism: Aspergillus niger
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2024-12-18
Authors: Xing, S.Q., Hu, G.L., He, L.P.
PDB entry 9l3c: Staphylococcus aureus lipase-Penfluridol complex (on the ground)
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.23 Å
Deposited: 2024-12-18
Authors: Kitadokoro, J., Hirokawa, T., Kamitani, S., Kitadokoro, K.
PDB entry 9l3d: Crystal structure of endo-processive xyloglucanase Xeg5A from Aspergillus oryzae
Classification: HYDROLASE
Source organism: Aspergillus oryzae RIB40
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-18
Authors: Nakamichi, Y., Shimada, N., Watanabe, M., Fujii, T., Matsuzawa, T.
PDB entry 9l3e: Structure of GAPDH complexed with Leu-F
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2024-12-18
Authors: Gong, L.
PDB entry 9l3f: Structure-Guided Design of Picomolar-level Macrocyclic TRPC5 Channel Inhibitors with Antidepressant Activity
Classification: MEMBRANE PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.09 Å
Deposited: 2024-12-18
Authors: Che, T., Zhang, J., Xiong, B., Cheng, X.Y.
PDB entry 9l3g: Structure of the flotillin complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Deposited: 2024-12-18
Authors: Lu, M., Gao, N.
PDB entry 9l3i: Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2024-12-18
Authors: Wang, M., Yang, J.Y., Peng, Q., Shi, Y.
PDB entry 9l3j: Crystal structure of endo-processive xyloglucanase Xeg5A from Aspergillus oryzae with GXG
Classification: HYDROLASE
Source organism: Aspergillus oryzae RIB40
Experimental method: X-RAY DIFFRACTION
Resolution: 2.74 Å
Deposited: 2024-12-18
Authors: Nakamichi, Y., Shimada, N., Watanabe, M., Fujii, T., Matsuzawa, T.
PDB entry 9l3l: Crystal structure of the C lobe of E6AP in complex with K48-linked diUb
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5854 Å
Deposited: 2024-12-18
Authors: Wu, X.W., Cai, H.Y., Du, Y.X., Liu, L.
PDB entry 9l3m: Hexamer Msp1 from S.cerevisiae (with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli BL21(DE3); Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å
Deposited: 2024-12-18
Authors: Simin, W., Chengdong, H.
PDB entry 9l3o: Crystal structure of endo-processive xyloglucanase Xeg5A from Aspergillus oryzae with XXLG
Classification: HYDROLASE
Source organism: Aspergillus oryzae RIB40
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-12-19
Authors: Nakamichi, Y., Shimada, N., Watanabe, M., Fujii, T., Matsuzawa, T.
PDB entry 9l3p: Crystal structure of endo-processive xyloglucanase Xeg5A E285A from Aspergillus oryzae with GLLX/L
Classification: HYDROLASE
Source organism: Aspergillus oryzae RIB40
Experimental method: X-RAY DIFFRACTION
Resolution: 2.34 Å
Deposited: 2024-12-19
Authors: Nakamichi, Y., Shimada, N., Watanabe, M., Fujii, T., Matsuzawa, T.
PDB entry 9l3q: Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å
Deposited: 2024-12-19
Authors: Wang, M., Yang, J.Y., Peng, Q., Shi, Y.
PDB entry 9l3r: Human PI3KDELTA in complex with Zandelisib
Classification: TRANSFERASE/INHIBITOR
Source organism: Bos taurus; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-12-19
Authors: Nagiri, C., Aburai, K., Takahashi, Y., Saito, J.
PDB entry 9l3s: Staphylococcus aureus lipase-Penfluridol complex (in space)
Classification: HYDROLASE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.57 Å
Deposited: 2024-12-19
Authors: Kitadokoro, J., Hirokawa, T., Kamo, M., Furubayasi, N., Inaka, K., Kamitani, S., Kitadokoro, K.
PDB entry 9l3t: PPARgamma Ligand binding domain in complex with piperine
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2024-12-19
Authors: Egawa, D., Ishida, H., Katakawa, K.
PDB entry 9l3u: Heptamer Msp1 from S.cerevisiae(with a catalytic dead mutation) in complex with an unknown peptide substrate
Classification: MEMBRANE PROTEIN
Source organism: Saccharomyces cerevisiae S288C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Deposited: 2024-12-19
Authors: Chengdong, H., Simin, W., Xuan, C.
PDB entry 9l3v: structure of WEEV strain 71V1658 virus-like particle(3-fold region)
Classification: VIRAL PROTEIN
Source organism: Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.53 Å
Deposited: 2024-12-19
Authors: Liang, S., Yang, Y., Liu, Y., Rao, Z., Wang, Y., Lou, Z.
PDB entry 9l3w: Cryo-EM structure of the chemokine-like receptor 1 in complex with chemerin and Gi1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-12-19
Authors: Zhu, Y., He, M., Wu, B., Zhao, Q.
PDB entry 9l3y: Cryo-EM structure of the G-protein coupled receptor 1 (GPR1) in complex with chemerin and Gi1
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2024-12-19
Authors: Zhu, Y., He, M., Wu, B., Zhao, Q.
PDB entry 9l3z: Cryo-EM structure of the inactive chemokine-like receptor 1 (CMKLR1)
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2024-12-19
Authors: Zhu, Y., He, M., Wu, B., Zhao, Q.
PDB entry 9l40: kinase of ATR bound VE-822 state
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.87 Å
Deposited: 2024-12-19
Authors: Wang, G.
PDB entry 9l41: Structure of WEEV strain 71V1658 virus-like particles (VLPs) in complex with human PCDH10 extracellular cadherin repeats 1-2 (EC1-EC2)(3-fold region)
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Western equine encephalitis virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Deposited: 2024-12-19
Authors: Liang, S., Yang, Y., Liu, Y., Rao, Z., Wang, Y., Lou, Z.
PDB entry 9l42: Cryo-EM structure of human histamine receptor H4R in complex with agonist histamine and Gi proteins
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-12-19
Authors: Chen, A., Zhang, H.
PDB entry 9l43: ATR Spiral -ATRIP bound with VE-822
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Deposited: 2024-12-19
Authors: Wang, G.
PDB entry 9l44: Neuraminidase of A/dairy cow/Minnesota/24_016288-003/2024 H5N1
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2024-12-19
Authors: Wang, X., Ge, J., Li, X.
PDB entry 9l45: ATR-ATRIP bound with VE-822
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2024-12-19
Authors: Wang, G.
PDB entry 9l46: ATR-ATRIP-bound with AMP-PNP
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.29 Å
Deposited: 2024-12-20
Authors: Wang, G.
PDB entry 9l47: Crystal structure of HLA-C*12:03-MY9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2024-12-20
Authors: Yang, M., Zhong, P.L., Wei, P.C.
PDB entry 9l48: Crystal structure of HLA-C*12:02-RV9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-20
Authors: Yang, M., Zhong, P.L., Wei, P.C.
PDB entry 9l49: Crystal structure of HLA-C*12:03-RV9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2024-12-20
Authors: Yang, M., Zhong, P.L., Wei, P.C.
PDB entry 9l4a: Crystal structure of HLA-C*12:02-MY9
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-20
Authors: Yang, M., Zhong, P.L., Wei, P.C.
PDB entry 9l4b: Kinase domain of ATR bound with RP-3500
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2024-12-20
Authors: Wang, G.
PDB entry 9l4c: ATR Spiral -ATRIP bound with RP-3500
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.06 Å
Deposited: 2024-12-20
Authors: Wang, G.
PDB entry 9l4d: ATR-ATRIP bound with RP-3500
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å
Deposited: 2024-12-20
Authors: Wang, G.
PDB entry 9l4e: Solution Structure of the 2:1 Complex Between the Benzothiazole Derivative BTO-28 and the MYC G-quadruplex
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2024-12-20
Authors: Ni, X., Hu, X., Cao, C.
PDB entry 9l4f: ATR-ATRIP bound with ATPgammaS
Classification: CELL CYCLE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.22 Å
Deposited: 2024-12-20
Authors: Wang, G.
PDB entry 9l4g: Crystal structure of HLA-C*14:03 complexed with 8-mer HIV gag peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2024-12-20
Authors: Liu, Q.Y., Yang, M., Wei, P.C.
PDB entry 9l4h: Crystal structure of HLA-C*14:03 complexed with KIR2DL2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2024-12-20
Authors: Liu, Q.Y., Yang, M., Wei, P.C.
PDB entry 9l4i: Crystal structure of HLA-C*14:02 complexed with KIR2DL2
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-12-20
Authors: Liu, Q.Y., Yang, M., Wei, P.C.
PDB entry 9l4j: Structure of mouse SCMCcore complex contain ZBED3
Classification: CYTOSOLIC PROTEIN
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2024-12-20
Authors: Ou, G.J., Liu, Q.T., Jiao, H.Z., Han, Z., Li, J.H.
PDB entry 9l4k: Structure of human NLRP2-TLE6-OOEP complex
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.41 Å
Deposited: 2024-12-20
Authors: Ou, G.J., Liu, Q.T., Jiao, H.Z., Han, Z., Li, J.H.
PDB entry 9l4l: Structure of human SCMCcore complex contain NLRP2
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2024-12-20
Authors: Ou, G.J., Liu, Q.T., Jiao, H.Z., Han, Z., Li, J.H.
PDB entry 9l4n: E. coli MaeB acetyl-CoA bound form
Classification: STRUCTURAL PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.03 Å
Deposited: 2024-12-25
Authors: Sassa, M., Yamato, H., Tanino, H., Fukuda, Y., Inoue, T.
PDB entry 9l4o: Arabidopsis thaliana protease-associated domain of vacuolar sorting receptor 1 in complexed with vicilin-like seed storage protein 22 C-terminal pentapeptide SDRFV (pH 5.8)
Classification: PROTEIN TRANSPORT
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-20
Authors: Lui, S.N., Wong, K.B.
PDB entry 9l4p: Arabidopsis thaliana protease-associated domain of vacuolar sorting receptor 1 in complexed with vicilin-like seed storage protein 22 C-terminal pentapeptide SDRFV (pH 7.0)
Classification: PROTEIN TRANSPORT
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2024-12-20
Authors: Lui, S.N., Wong, K.B.
PDB entry 9l4q: Crystal structure of the carbamoyl N-methyltransferase Asc-Orf2 complexed with SAH
Classification: BIOSYNTHETIC PROTEIN
Source organism: Amycolatopsis alba DSM 44262
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2024-12-20
Authors: Li, Z.Y., Zhu, D.Y., Shen, Y.M.
PDB entry 9l4s: PEDV 3CLpro mutant (C144A) in complex with nsp15/16 peptite substrate
Classification: VIRAL PROTEIN
Source organism: Porcine epidemic diarrhea virus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.96 Å
Deposited: 2024-12-20
Authors: Zhang, Y., Zhang, D., Shi, Y.J., Peng, G.Q.
PDB entry 9l4t: The crystal structure of BurB-Met complex
Classification: TRANSFERASE
Source organism: Burkholderia thailandensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.16 Å
Deposited: 2024-12-21
Authors: Li, C.Y., Cao, H.Y.
PDB entry 9l4v: The crystal structure of BurB-SMM-SAM complex
Classification: TRANSFERASE
Source organism: Burkholderia thailandensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-12-21
Authors: Li, C.Y., Cao, H.Y.
PDB entry 9l50: The ring expansion oxygenase SpoC in complex with Mn and N-oxalylglycine (NOG)
Classification: OXIDOREDUCTASE
Source organism: Sporormiella sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85 Å
Deposited: 2024-12-21
Authors: Liu, M., He, X.
PDB entry 9l51: The structure of the ring expansion oxygenase SpoC
Classification: OXIDOREDUCTASE
Source organism: Sporormiella sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-21
Authors: Liu, M., He, X.
PDB entry 9l52: The ring expansion oxygenase SpoC in complex with Fe and stipitaldehyde
Classification: OXIDOREDUCTASE
Source organism: Sporormiella sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2024-12-23
Authors: Liu, M., He, X.
PDB entry 9l54: cryo-EM structure of Vitamin K-dependent gamma-carboxylase complexed with Vitamin K1 2,3-epoxide
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.04 Å
Deposited: 2024-12-22
Authors: Yao, D., Wu, K., Lan, P.
PDB entry 9l55: Plastid Localized Exonuclease 1 (D249A) complexed with DNA
Classification: PLANT PROTEIN/DNA
Source organism: Zea mays; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.87 Å
Deposited: 2024-12-22
Authors: Shi, G., Zhang, Y.
PDB entry 9l56: Plastid-localized exonuclease 1
Classification: PLANT PROTEIN
Source organism: Zea mays
Experimental method: X-RAY DIFFRACTION
Resolution: 2.42 Å
Deposited: 2024-12-23
Authors: Shi, G., Zhang, Y.
PDB entry 9l5m: X-ray structure of sarcoplasmic Ca-binding protein (SCP), a calcium ion-binding protein from Pinctada fucata
Classification: METAL BINDING PROTEIN
Source organism: Pinctada fucata
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2024-12-23
Authors: Namikawa, Y., Zhu, L., Wang, L., Lu, P., Zhang, M., Nagata, K., Suzuki, M.
PDB entry 9l5o: Crystal structure of the mutant Y549A of collagenase VhaC
Classification: HYDROLASE
Source organism: Vibrio harveyi VHJR7
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2024-12-23
Authors: Zhao, W.X.
PDB entry 9l5q: Crystal structure of PI5P4Kalpha N251S in apo form
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2024-12-23
Authors: Senda, M., Imai, M., Fujisaki, M., Takeuchi, K., Sasaki, A., Senda, T.
PDB entry 9l5r: Cryo-EM structure of the thermophile spliceosome (state ILS)
Classification: SPLICING/RNA
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2024-12-23
Authors: Li, Y., Fischer, P., Wang, M., Yuan, R., Meng, W., Luehrmann, R., Lau, B., Hurt, E., Cheng, J.
PDB entry 9l5s: Cryo-EM structure of the thermophile spliceosome (state B*Q1)
Classification: SPLICING/RNA
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-12-23
Authors: Li, Y., Fischer, P., Wang, M., Yuan, R., Meng, W., Luehrmann, R., Lau, B., Hurt, E., Cheng, J.
PDB entry 9l5t: Cryo-EM structure of the thermophile spliceosome (state B*Q2)
Classification: SPLICING/RNA
Source organism: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2024-12-23
Authors: Li, Y., Fischer, P., Wang, M., Yuan, R., Meng, W., Luehrmann, R., Lau, B., Hurt, E., Cheng, J.
PDB entry 9l5u: Papain-like cysteine protease toxin/immunity pair
Classification: TOXIN
Source organism: Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775
Experimental method: X-RAY DIFFRACTION
Resolution: 1.87 Å
Deposited: 2024-12-23
Authors: Chen, P.-P., Hsia, K.-C., Ting, S.-Y., Chen, Y.-C.
PDB entry 9l5v: cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332
Classification: PHOTOSYNTHESIS
Source organism: Rhodomonas sp. NIES-2332
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.17 Å
Deposited: 2024-12-23
Authors: Yonehara, N., Akita, F., Shen, J.R.
PDB entry 9l5w: FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2024-12-23
Authors: Tan, Y.B., Luo, D.
PDB entry 9l5x: Crystal structure of Klebsiella pneumoniae Enoyl-Acyl Carrier Protein Reductase (FabI) in complex with Triclosan
Classification: OXIDOREDUCTASE
Source organism: Klebsiella pneumoniae subsp. pneumoniae 12-3578
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2024-12-23
Authors: Biswas, S., Patra, A., Kushwaha, G.S., Suar, M.
PDB entry 9l5y: Structure of Ro60 dimer from Thermus phage phiLo
Classification: RNA BINDING PROTEIN/RNA
Source organism: Thermus phage phiLo
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.81 Å
Deposited: 2024-12-23
Authors: Hu, Z., Huang, Y.
PDB entry 9l5z: Crystal structure of a parallel-stranded PNA duplex
Classification: PEPTIDE NUCLEIC ACID
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2024-12-23
Authors: Shibata, M., Aiba, Y., Sugimoto, H., Shoji, O.
PDB entry 9l60: Gi-bound kappa opioid receptor in complex with dynorphin and positive allosteric modulator MPAM-15
Classification: MEMBRANE PROTEIN
Source organism: Bos taurus; Homo sapiens; Rattus norvegicus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2024-12-23
Authors: Zhuang, Y., Wang, Y., Xu, Y., Luo, P., Xu, H.E.
PDB entry 9l61: Crystal Structure of BRD2 BD2 domain in complex with small molecule inhibitor Mivebresib ABBV-075
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2024-12-23
Authors: Jwala, N., Vijayshankar, N., Thomas, A., NarasimhaRao, K.
PDB entry 9l62: A novel allosteric covalent inhibitory site of fucosyltransferase 8 revealed by crystal structures
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2024-12-23
Authors: Fang, P., Jiang, J.
PDB entry 9l63: A novel allosteric covalent inhibitory site of fucosyltransferase 8 revealed by crystal structures
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.66 Å
Deposited: 2024-12-24
Authors: Jiang, J., Fang, P.
PDB entry 9l64: A novel allosteric covalent inhibitory site of fucosyltransferase 8 revealed by crystal structures
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.49 Å
Deposited: 2024-12-24
Authors: Jiang, J., Fang, P.
PDB entry 9l65: A novel allosteric covalent inhibitory site of fucosyltransferase 8 revealed by crystal structures
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2024-12-24
Authors: Jiang, J., Fang, P.
PDB entry 9l6a: Crystal structure of KRas G12D (GDP) in complex with compound 1
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.36 Å
Deposited: 2024-12-24
Authors: Amano, Y., Tateishi, Y.
PDB entry 9l6b: A ROS-Sensing Transcription Factor Promotes RpoS Accumulation to Resist Oxidative Stress
Classification: DNA BINDING PROTEIN
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2024-12-24
Authors: Yuan, X.L., Wang, W.W.
PDB entry 9l6c: Cryo-EM structure of Delta RBD complexed with ConD-852, P2C-1F11 and S304 Fabs
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.33 Å
Deposited: 2024-12-24
Authors: Zheng, Z., Bing, J., Congcong, L., Bing, Z.
PDB entry 9l6d: the crystal structure of Azurin-LBT
Classification: ELECTRON TRANSPORT
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.38 Å
Deposited: 2024-12-24
Authors: Su, B., Yu, Y., Liu, H.
PDB entry 9l6e: A novel allosteric covalent inhibitory site of fucosyltransferase 8 revealed by crystal structures
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.07 Å
Deposited: 2024-12-24
Authors: Jiang, J., Fang, P.
PDB entry 9l6f: Crystal structure of KRas G12D (GDP) in complex with ASP3082
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.18 Å
Deposited: 2024-12-24
Authors: Amano, Y., Tateishi, Y.
PDB entry 9l6i: Glycogen phosphorylase from Segatella copri
Classification: STRUCTURAL PROTEIN
Source organism: Segatella copri
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2024-12-25
Authors: Shobu, K., Fukuda, Y., Inoue, T.
PDB entry 9l6j: Structural studies on the conformation changes induced by ligand binding in an Adenine phosphoribosyltransferase (FnAPRT) from Fusobacterium nucleatum
Classification: TRANSFERASE
Source organism: Fusobacterium nucleatum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.44 Å
Deposited: 2024-12-24
Authors: Kim, B., Hwang, J., Do, H., Lee, J.H.