LiteFold/PDB huggingface dataset:
PDB entry 5z9r: NMNAT as a specific chaperone antagonizing pathological condensation of phosphorylated tau
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-02-05
Authors: Dou, S., Ma, X., Li, D., Liu, C.
PDB entry 5z9s: Functional and Structural Characterization of a beta-Glucosidase Involved in Saponin Metabolism from Intestinal Bacteria
Classification: HYDROLASE
Source organism: Bifidobacterium longum
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2018-02-05
Authors: Yan, S., Wei, P.C., Li, J.R.
PDB entry 5z9t: a new PL6 alginate lyase complex with trisaccharide
Classification: LYASE
Source organism: Vibrio splendidus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2018-02-05
Authors: Liu, W.Z., Lyu, Q.Q., Zhang, K.K., Li, Z.J.
PDB entry 5z9w: Ebola virus nucleoprotein-RNA complex
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å
Deposited: 2018-02-05
Authors: Sugita, Y., Matsunami, H., Kawaoka, Y., Noda, T., Wolf, M.
PDB entry 5z9x: Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate
Classification: PLANT PROTEIN/RNA
Source organism: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2018-02-05
Authors: Chen, J., Liu, L., You, C., Gu, J., Ruan, W., Zhang, L., Gan, J., Cao, C., Huang, Y., Chen, X., Ma, J.
PDB entry 5z9y: Crystal structure of Mycobacterium tuberculosis thiazole synthase (ThiG) complexed with DXP
Classification: TRANSFERASE
Source organism: Mycobacterium tuberculosis H37Rv
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2018-02-05
Authors: Zhang, J., Zhang, B., Zhao, Y., Yang, X., Huang, M., Cui, P., Zhang, W., Li, J., Zhang, Y.
PDB entry 5z9z: The C-terminal RRM domain of Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 (E329A/E330A/E332A)
Classification: RNA BINDING PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.049 Å
Deposited: 2018-02-05
Authors: Chen, J., Liu, L., You, C., Gu, J., Ruan, W., Zhang, L., Cao, C., Gan, J., Huang, Y., Chen, X., Ma, J.
PDB entry 5za0: A cryo-protectant induces the conformational change of glyceraldehyde-3-phosphate dehydrogenase
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-02-06
Authors: Kim, Y.J.
PDB entry 5za1: Ligand complex of RORgt LBD
Classification: TRANSCRIPTION
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.52 Å
Deposited: 2018-02-06
Authors: Yamamoto, S., Yamaguchi, H.
PDB entry 5za2: Fox-4 beta-lactamase complexed with avibactam
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.503 Å
Deposited: 2018-02-06
Authors: Nukaga, M., Hoshino, T., Papp-Wallace, K.M., Bonomo, R.A.
PDB entry 5za3: Structure of a C-terminal S. mutans response regulator VicR domain
Classification: SIGNALING PROTEIN
Source organism: Streptococcus mutans
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2018-02-06
Authors: Cai, Y.F., Hu, X.J., San, J.Y., Han, A.D.
PDB entry 5za4: Crystal structure of Sialic acid Binding protein from Haemophilus ducreyi
Classification: SUGAR BINDING PROTEIN
Source organism: Haemophilus ducreyi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.193 Å
Deposited: 2018-02-06
Authors: Setty, T.G., Subramanian, R.
PDB entry 5za7: uPA-HMA
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2018-02-06
Authors: Buckley, B.J., Jiang, L.G., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5za8: uPA-BB2-27F
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2018-02-06
Authors: Buckley, B.J., Jiang, L.G., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5za9: uPA-BB2-50F
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2018-02-07
Authors: Buckley, B.J., Jiang, L.G., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5zab: Crystal structure of cf3-aequorin
Classification: LUMINESCENT PROTEIN
Source organism: Aequorea victoria
Experimental method: X-RAY DIFFRACTION
Resolution: 2.147 Å
Deposited: 2018-02-07
Authors: Inouye, S., Tomabechi, Y., Sekine, S.I., Shirouzu, M., Hosoya, T.
PDB entry 5zac: Crystal structure of ConA-R2M
Classification: SUGAR BINDING PROTEIN
Source organism: Canavalia ensiformis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2018-02-07
Authors: Gan, J.H., Chen, G.S., Hu, R.T.
PDB entry 5zad: Human topoisomerase II beta in complex with DNA
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2018-02-07
Authors: Sun, L.Y., Zhu, L.W., Tang, Y.J.
PDB entry 5zae: uPA-6F-HMA
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2018-02-07
Authors: Buckley, B.J., Jiang, L.G., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5zaf: uPA-BB2-28F
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2018-02-07
Authors: Buckley, B.J., Jiang, L.G., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5zag: uPA-BB2-94F
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2018-02-07
Authors: Buckley, B.J., Jiang, L.G., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5zah: uPA-BB2-30F
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.98 Å
Deposited: 2018-02-07
Authors: Buckley, B.J., Jiang, L.G., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5zai: Crystal structure of 3-Hydroxypropionyl-CoA dehydratase from Metallosphaera sedula
Classification: HYDROLASE
Source organism: Metallosphaera sedula
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2018-02-07
Authors: Lee, D., Kim, K.J.
PDB entry 5zaj: uPA-31F
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2018-02-07
Authors: Buckley, B.J., Jiang, L.G., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5zak: Cryo-EM structure of human Dicer and its complexes with a pre-miRNA substrate
Classification: HYDROLASE/PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å
Deposited: 2018-02-07
Authors: Liu, Z., Wang, J., Cheng, H., Ke, X., Sun, L., Zhang, Q.C., Wang, H.-W.
PDB entry 5zal: Cryo-EM structure of human Dicer and its complexes with a pre-miRNA substrate
Classification: HYDROLASE/PROTEIN BINDING/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å
Deposited: 2018-02-07
Authors: Liu, Z., Wang, J., Cheng, H., Ke, X., Sun, L., Zhang, Q.C., Wang, H.-W.
PDB entry 5zam: Cryo-EM structure of human Dicer and its complexes with a pre-miRNA substrate
Classification: HYDROLASE/PROTEIN BINDING/RNA
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å
Deposited: 2018-02-07
Authors: Liu, Z., Wang, J., Cheng, H., Ke, X., Sun, L., Zhang, Q.C., Wang, H.-W.
PDB entry 5zan: Crystal Structure of Aurora-A in complex with a new Quinazoline inhibitor
Classification: TRANSFERASE/INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.85 Å
Deposited: 2018-02-07
Authors: Cheng, B., Lu, G., Zhou, H.
PDB entry 5zap: Atomic structure of the herpes simplex virus type 2 B-capsid
Classification: VIRUS
Source organism: Human herpesvirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2018-02-08
Authors: Yuan, S., Wang, J.L., Zhu, D.J., Wang, N., Gao, Q., Chen, W.Y., Tang, H., Wang, J.Z., Zhang, X.Z., Liu, H.R., Rao, Z.H., Wang, X.X.
PDB entry 5zas: Crystal structure of 5-formylcytosine containing decamer dsDNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2018-02-08
Authors: Fu, T.R., Zhang, L.
PDB entry 5zat: Crystal structure of 5-carboxylcytosine containing decamer dsDNA
Classification: DNA
Experimental method: X-RAY DIFFRACTION
Resolution: 1.06 Å
Deposited: 2018-02-08
Authors: Fu, T.R., Zhang, L.
PDB entry 5zau: Complex of the human FYN SH3 and monobody binder
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; Sulfolobus solfataricus
Experimental method: SOLUTION NMR
Deposited: 2018-02-09
Authors: Reddy, P.P., Gulyani, A., Das, R.
PDB entry 5zax: Crystal structure of thymidylate kinase in complex with ADP, TDP and TMP from thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2018-02-09
Authors: Chaudhary, S.K., Jeyakanthan, J., Sekar, K.
PDB entry 5zaz: Solution structure of integrin b2 monomer tranmembrane domain in bicelle
Classification: CELL ADHESION
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2018-02-09
Authors: Li, H., Guo, J., Xu, C.
PDB entry 5zb0: Crystal structure of thymidylate kinase in complex with ADP and TDP from thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.19 Å
Deposited: 2018-02-09
Authors: Chaudhary, S.K., Jeyakanthan, J., Sekar, K.
PDB entry 5zb1: Monomeric crystal structure of orf57 from KSHV
Classification: TRANSCRIPTION
Source organism: Human herpesvirus 8
Experimental method: X-RAY DIFFRACTION
Resolution: 3.061 Å
Deposited: 2018-02-09
Authors: Gao, Z.Q., Yuan, F., Lan, K., Dong, Y.H.
PDB entry 5zb2: Crystal structure of Rad7 and Elc1 complex in yeast
Classification: DNA BINDING PROTEIN/LIGASE
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.30001 Å
Deposited: 2018-02-09
Authors: Jiang, T., Liu, L., Huo, Y.
PDB entry 5zb3: Dimeric crystal structure of ORF57 from KSHV
Classification: TRANSCRIPTION
Source organism: Human herpesvirus 8
Experimental method: X-RAY DIFFRACTION
Resolution: 3.506 Å
Deposited: 2018-02-09
Authors: Gao, Z.Q., Yuan, F., Dong, Y.H., Lan, K.
PDB entry 5zb4: Crystal structure of thymidylate kinase in complex with ADP and TMP from thermus thermophilus HB8
Classification: TRANSFERASE
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.92 Å
Deposited: 2018-02-09
Authors: Chaudhary, S.K., Jeyakanthan, J., Sekar, K.
PDB entry 5zb5: The structural basis of histone chaperoneVps75
Classification: CHAPERONE
Source organism: Pneumocystis carinii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.299 Å
Deposited: 2018-02-09
Authors: Chen, Y., Zhang, Y., Dou, Y., Wang, M., Xu, S., Jiang, H., Limper, A., Su, D.
PDB entry 5zb6: NMR structure of UVI31+
Classification: PLANT PROTEIN
Source organism: Chlamydomonas reinhardtii
Experimental method: SOLUTION NMR
Deposited: 2018-02-10
Authors: Rout, A.K., Patel, S., Rao, B.J., Chary, K.V.
PDB entry 5zb7: CTX-M-64 apoenzyme
Classification: HYDROLASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.63 Å
Deposited: 2018-02-10
Authors: Cheng, Q., Chen, S.
PDB entry 5zb8: Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus
Classification: DNA BINDING PROTEIN
Source organism: Pyrococcus furiosus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2018-02-10
Authors: Miyazono, K., Ito, T., Tanokura, M.
PDB entry 5zb9: Crystal structure of Rtt109 from Aspergillus fumigatus
Classification: TRANSFERASE
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.502 Å
Deposited: 2018-02-10
Authors: Zhang, L., Serra-Cardona, A., Zhou, H., Wang, M., Yang, N., Zhang, Z., Xu, R.M.
PDB entry 5zba: Crystal structure of Rtt109-Asf1-H3-H4-CoA complex
Classification: TRANSFERASE/STRUCTURAL PROTEIN
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100); Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2018-02-10
Authors: Zhang, L., Serra-Cardona, A., Zhou, H., Wang, M., Yang, N., Zhang, Z., Xu, R.M.
PDB entry 5zbb: Crystal structure of Rtt109-Asf1-H3-H4 complex
Classification: TRANSFERASE/STRUCTURAL PROTEIN
Source organism: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100); Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å
Deposited: 2018-02-10
Authors: Zhang, L., Serra-Cardona, A., Zhou, H., Wang, M., Yang, N., Zhang, Z., Xu, R.M.
PDB entry 5zbc: Crystal structure of Se-Met tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Classification: OXIDOREDUCTASE
Source organism: Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.2 Å
Deposited: 2018-02-11
Authors: Yamaguchi, H., Tatsumi, M., Takahashi, K., Tagami, U., Sugiki, M., Kashiwagi, T., Okazaki, S., Mizukoshi, T., Asano, Y.
PDB entry 5zbd: Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Classification: OXIDOREDUCTASE
Source organism: Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2018-02-11
Authors: Yamaguchi, H., Tatsumi, M., Takahashi, K., Tagami, U., Sugiki, M., Kashiwagi, T., Okazaki, S., Mizukoshi, T., Asano, Y.
PDB entry 5zbe: Crystal structure of AerE from Microcystis aeruginosa
Classification: ISOMERASE
Source organism: Microcystis aeruginosa DIANCHI905
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2018-02-11
Authors: Qiu, X.
PDB entry 5zbf: Crystal structure of 4-hydroxyphenylpyruvic acid bound AerE from Microcystis aeruginosa
Classification: ISOMERASE
Source organism: Microcystis aeruginosa DIANCHI905
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2018-02-11
Authors: Qiu, X., Zhu, W.
PDB entry 5zbg: Cryo-EM structure of human TRPC3 at 4.36A resolution
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.36 Å
Deposited: 2018-02-11
Authors: Chen, L., Tang, Q., Guo, W.
PDB entry 5zbh: The Crystal Structure of Human Neuropeptide Y Y1 Receptor with BMS-193885
Classification: SIGNALING PROTEIN
Source organism: Enterobacteria phage T4T; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2018-02-11
Authors: Yang, Z., Han, S., Zhao, Q., Wu, B.
PDB entry 5zbi: Crystal structure of asparaginyl endopeptidases from Viola Canadensis
Classification: PLANT PROTEIN
Source organism: Viola canadensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.09 Å
Deposited: 2018-02-12
Authors: Wong, Y.H., Lescar, J.
PDB entry 5zbj: Crystal structure of type-I LOG from Pseudomonas aeruginosa PAO1
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89 Å
Deposited: 2018-02-12
Authors: Seo, H., Kim, K.-J.
PDB entry 5zbk: Crystal structure of type-I LOG from Pseudomonas aeruginosa PAO1 in complex with AMP
Classification: HYDROLASE
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2018-02-12
Authors: Seo, H., Kim, K.-J.
PDB entry 5zbl: Crystal structure of type-I LOG from Corynebacterium glutamicum in complex with AMP
Classification: HYDROLASE
Source organism: Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2018-02-12
Authors: Seo, H., Kim, K.-J.
PDB entry 5zbm: Structure of glycolate oxidase containing FMN from Nicotiana benthamiana
Classification: OXIDOREDUCTASE
Source organism: Nicotiana benthamiana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2018-02-12
Authors: Chen, Z., Liu, Y.
PDB entry 5zbn: Structure of glycolate oxidase without FMN from Nicotiana benthamiana
Classification: OXIDOREDUCTASE
Source organism: Nicotiana benthamiana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.32 Å
Deposited: 2018-02-12
Authors: Chen, Z., Liu, Y.
PDB entry 5zbo: Cryo-EM structure of PCV2 VLPs
Classification: DNA BINDING PROTEIN
Source organism: Porcine circovirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.12 Å
Deposited: 2018-02-12
Authors: Mo, X., Yuan, A.Y.
PDB entry 5zbq: The Crystal Structure of human neuropeptide Y Y1 receptor with UR-MK299
Classification: SIGNALING PROTEIN
Source organism: Enterobacteria phage RB55; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2018-02-12
Authors: Yang, Z., Han, S., Zhao, Q., Wu, B.
PDB entry 5zbr: Crystal Structure of Kinesin-3 KIF13B motor domain in AMPPNP form
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-02-12
Authors: Ren, J.Q., Wang, S., Feng, W.
PDB entry 5zbs: Crystal Structure of Kinesin-3 KIF13B motor Y73C mutant
Classification: TRANSPORT PROTEIN
Source organism: Rattus norvegicus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.203 Å
Deposited: 2018-02-12
Authors: Ren, J.Q., Wang, S., Feng, W.
PDB entry 5zbt: Structure of legume lectin-like domain from Entamoeba histolytica
Classification: UNKNOWN FUNCTION
Source organism: Entamoeba histolytica HM-1:IMSS-A
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-02-12
Authors: Khan, F., Suguna, K.
PDB entry 5zbu: Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å
Deposited: 2018-02-12
Authors: Datta, A.B., Sarkar, S.
PDB entry 5zbx: The crystal structure of the nucleosome containing histone H3.1 CATD(V76Q, K77D)
Classification: DNA BINDING PROTEIN/DNA
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.58 Å
Deposited: 2018-02-13
Authors: Arimura, Y., Takagi, H., Kurumizaka, H.
PDB entry 5zby: Crystal structure of a [NiFe] hydrogenase maturation protease HycI from Thermococcus kodakarensis KOD1
Classification: HYDROLASE
Source organism: Thermococcus kodakarensis KOD1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.591 Å
Deposited: 2018-02-13
Authors: Kwon, S., Nishitani, Y., Miki, K.
PDB entry 5zbz: Crystal structure of the DEAD domain of Human eIF4A with sanguinarine
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3086 Å
Deposited: 2018-02-14
Authors: Ding, Y., Ding, L.
PDB entry 5zc0: Crystal structure of Xenopus embryonic epidermal lectin in complex with Samarium ions
Classification: SUGAR BINDING PROTEIN
Source organism: Xenopus laevis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2018-02-14
Authors: Wangkanont, K.
PDB entry 5zc1: X-ray diffraction analysis of the CsStefin-1
Classification: HYDROLASE INHIBITOR
Source organism: Clonorchis sinensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2.30271 Å
Deposited: 2018-02-14
Authors: Jang, S.B., Park, S.Y.
PDB entry 5zc2: Acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (HPAH), reductase component (C1)
Classification: FLAVOPROTEIN
Source organism: Acinetobacter baumannii
Experimental method: X-RAY DIFFRACTION
Resolution: 2.898 Å
Deposited: 2018-02-14
Authors: Yuenyao, A., Petchyam, N., Chaiyen, P., Pakotiprapha, D.
PDB entry 5zc3: The Crystal Structure of PcRxLR12
Classification: IMMUNOSUPPRESSANT
Source organism: Phytophthora capsici
Experimental method: X-RAY DIFFRACTION
Resolution: 3.005 Å
Deposited: 2018-02-14
Authors: Zhao, L., Zhang, X., Zhu, C.
PDB entry 5zc4: Crystal Structure of RNF13 RING domain
Classification: ENDOCYTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.906 Å
Deposited: 2018-02-14
Authors: Datta, A.B., Sarkar, S.
PDB entry 5zc5: uPA-NU-09F
Classification: HYDROLASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2018-02-15
Authors: Jiang, L.G., Buckley, B.J., Huang, M.D., Kelso, M.J., Ranson, M.
PDB entry 5zc6: Solution structure of H-RasT35S mutant protein in complex with KBFM123
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2018-02-15
Authors: Matsumoto, S., Hayashi, Y., Hiraga, T., Matsuo, K., Kataoka, T.
PDB entry 5zc7: Crystal structure of APRT from Y. pseudotuberculosis with bound adenine (P63 space group).
Classification: TRANSFERASE
Source organism: Yersinia pseudotuberculosis serotype I (strain IP32953)
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-02-15
Authors: Pavithra, G.C., Ramagopal, U.A.
PDB entry 5zc9: Crystal structure of the human eIF4A1-ATP analog-RocA-polypurine RNA complex
Classification: TRANSLATION/RNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-02-16
Authors: Iwasaki, W., Takahashi, M., Sakamoto, A., Iwasaki, S., Ito, T.
PDB entry 5zca: Crystal structure of lambda repressor (1-20) fused with maltose-binding protein
Classification: DNA BINDING PROTEIN
Source organism: Escherichia coli; Escherichia phage lambda
Experimental method: X-RAY DIFFRACTION
Resolution: 1.801 Å
Deposited: 2018-02-16
Authors: Hanazono, Y., Takeda, K., Miki, K.
PDB entry 5zcb: Crystal structure of Alpha-glucosidase
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2018-02-16
Authors: Kato, K., Saburi, W., Yao, M.
PDB entry 5zcc: Crystal structure of Alpha-glucosidase in complex with maltose
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.704 Å
Deposited: 2018-02-16
Authors: Kato, K., Saburi, W., Yao, M.
PDB entry 5zcd: Crystal structure of Alpha-glucosidase in complex with maltotriose
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.707 Å
Deposited: 2018-02-16
Authors: Kato, K., Saburi, W., Yao, M.
PDB entry 5zce: Crystal structure of Alpha-glucosidase in complex with maltotetraose
Classification: HYDROLASE
Source organism: Bacillus sp.
Experimental method: X-RAY DIFFRACTION
Resolution: 1.555 Å
Deposited: 2018-02-16
Authors: Kato, K., Saburi, W., Yao, M.
PDB entry 5zcg: Crystal structure of OsPP2C50 S265L/I267V:OsPYL/RCAR3 with (+)-ABA
Classification: PLANT PROTEIN
Source organism: Oryza sativa; Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2018-02-17
Authors: Lee, S., Han, S.
PDB entry 5zch: Crystal structure of OsPP2C50 I267W:OsPYL/RCAR3 with (+)-ABA
Classification: PLANT PROTEIN
Source organism: Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.474 Å
Deposited: 2018-02-17
Authors: Lee, S., Han, S.
PDB entry 5zci: Crystal structure of apo form of Xylose reductase from Debaryomyces nepalensis
Classification: OXIDOREDUCTASE
Source organism: Debaryomyces nepalensis
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2018-02-17
Authors: Manoj, N.
PDB entry 5zcj: Crystal structure of complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.004 Å
Deposited: 2018-02-17
Authors: Wang, J., Yuan, Z., Cui, Y., Xie, R., Wang, M., Ma, Y., Yu, X., Liu, X.
PDB entry 5zck: Structure of the RIP3 core region
Classification: PROTEIN FIBRIL
Experimental method: X-RAY DIFFRACTION
Resolution: 1.271 Å
Deposited: 2018-02-18
Authors: Li, J., Wu, H.
PDB entry 5zcl: Crystal structure of OsPP2C50 I267L:OsPYL/RCAR3 with (+)-ABA
Classification: PLANT PROTEIN
Source organism: Oryza sativa; Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.661 Å
Deposited: 2018-02-19
Authors: Lee, S., Han, S.
PDB entry 5zcm: Crystal structure of Xylose reductase from Debaryomyces nepalensis in complex with NADP-DTT adduct
Classification: OXIDOREDUCTASE
Source organism: Debaryomyces nepalensis
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2018-02-19
Authors: Manoj, N.
PDB entry 5zcn: Solution NMR structure of a new lasso peptide brevunsin
Classification: UNKNOWN FUNCTION
Source organism: Brevundimonas diminuta
Experimental method: SOLUTION NMR
Deposited: 2018-02-19
Authors: Hemmi, H., Kodani, S., Miyake, Y., Kaweewan, I., Nakagawa, H.
PDB entry 5zco: azide-bound cytochrome c oxidase structure determined using the crystals exposed to 2 mM azide solution for 2 days
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2018-02-19
Authors: Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
PDB entry 5zcp: azide-bound cytochrome c oxidase structure determined using the crystals exposed to 20 mM azide solution for 2 days
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2018-02-19
Authors: Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
PDB entry 5zcq: Azide-bound cytochrome c oxidase structure determined using the crystals exposed to 10 mM azide solution for 2 days
Classification: OXIDOREDUCTASE
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2018-02-19
Authors: Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
PDB entry 5zcr: DSM5389 glycosyltrehalose synthase
Classification: HYDROLASE
Source organism: Sulfolobus shibatae B12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-02-20
Authors: Tamada, T., Okazaki, N.
PDB entry 5zcs: 4.9 Angstrom Cryo-EM structure of human mTOR complex 2
Classification: GENE REGULATION
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å
Deposited: 2018-02-20
Authors: Chen, X., Liu, M., Tian, Y., Wang, H., Wang, J., Xu, Y.
PDB entry 5zct: The crystal structure of the poly-alpha-L-glutamate peptides synthetase RimK at 2.05 angstrom resolution.
Classification: LIGASE
Source organism: Escherichia coli (strain K12)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.05 Å
Deposited: 2018-02-20
Authors: Arimura, Y., Kono, T., Kino, K., Kurumizaka, H.
PDB entry 5zcu: Crystal structure of RCAR3:PP2C wild-type with pyrabactin
Classification: PLANT PROTEIN
Source organism: Oryza sativa; Oryza sativa subsp. japonica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.413 Å
Deposited: 2018-02-20
Authors: Han, S., Lee, Y., Lee, S.
PDB entry 5zcw: Structure of the Methanosarcina mazei class II CPD-photolyase in complex with intact, phosphodiester linked, CPD-lesion
Classification: DNA BINDING PROTEIN/DNA
Source organism: Methanosarcina mazei; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å
Deposited: 2018-02-21
Authors: Maestre-Reyna, M., Bessho, Y.
PDB entry 5zcx: Structure of T20/N39
Classification: SUGAR BINDING PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 2.299 Å
Deposited: 2018-02-21
Authors: Zhang, X.J., Ding, X.H.
PDB entry 5zcy: Crystal structure of archaeal translation initiation factor 1 at 1.5 Angstroms resolution
Classification: TRANSLATION
Source organism: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.5 Å
Deposited: 2018-02-22
Authors: Gogoi, P., Kanaujia, S.P.
PDB entry 5zcz: Solution structure of the T. Thermophilus HB8 TTHA1718 protein in living eukaryotic cells by in-cell NMR spectroscopy
Classification: METAL BINDING PROTEIN
Source organism: Thermus thermophilus HB8
Experimental method: SOLUTION NMR
Deposited: 2018-02-22
Authors: Tanaka, T., Teppei, I., Kamoshida, H., Mishima, M., Shirakawa, M., Guentert, P., Ito, Y.
PDB entry 5zd0: Solution structure of human ubiquitin with three alanine mutations in living eukaryotic cells by in-cell NMR spectroscopy
Classification: CYTOSOLIC PROTEIN
Source organism: Homo sapiens
Experimental method: SOLUTION NMR
Deposited: 2018-02-22
Authors: Tanaka, T., Ikeya, T., Kamoshida, H., Mishima, M., Shirakawa, M., Guentert, P., Ito, Y.
PDB entry 5zd4: Crystal structure of MBP-fused BIL1/BZR1 in complex with double-stranded DNA
Classification: TRANSCRIPTION
Source organism: Arabidopsis thaliana; Escherichia coli O157:H7; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.17 Å
Deposited: 2018-02-22
Authors: Nosaki, S., Miyakawa, T., Xu, Y., Nakamura, A., Hirabayashi, K., Tanokura, M.
PDB entry 5zda: Crystal structure of poly(ADP-ribose) glycohydrolase (PARG) from Deinococcus radiodurans in apo form
Classification: HYDROLASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.548 Å
Deposited: 2018-02-23
Authors: Cho, C.C., Hsu, C.H.
PDB entry 5zdb: Crystal structure of poly(ADP-ribose) glycohydrolase (PARG) from Deinococcus radiodurans in complex with ADP-ribose (P21)
Classification: HYDROLASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.972 Å
Deposited: 2018-02-23
Authors: Cho, C.C., Hsu, C.H.
PDB entry 5zdc: Crystal structure of poly(ADP-ribose) glycohydrolase (PARG) from Deinococcus radiodurans in complex with ADP-ribose (P32)
Classification: HYDROLASE
Source organism: Deinococcus radiodurans R1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.979 Å
Deposited: 2018-02-23
Authors: Cho, C.C., Hsu, C.H.
PDB entry 5zdd: Crystal structure of poly(ADP-ribose) glycohydrolase (PARG) from Deinococcus radiodurans in complex with ADP-ribose (P212121)
Classification: HYDROLASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.725 Å
Deposited: 2018-02-23
Authors: Cho, C.C., Hsu, C.H.
PDB entry 5zde: Crystal structure of poly(ADP-ribose) glycohydrolase (PARG) from Deinococcus radiodurans in complex with ADP-ribose (P3221)
Classification: HYDROLASE
Source organism: Deinococcus radiodurans R1
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2018-02-23
Authors: Cho, C.C., Hsu, C.H.
PDB entry 5zdf: Crystal structure of poly(ADP-ribose) glycohydrolase (PARG) T267K mutant from Deinococcus radiodurans in complex with ADP-ribose
Classification: HYDROLASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.504 Å
Deposited: 2018-02-23
Authors: Cho, C.C., Hsu, C.H.
PDB entry 5zdg: Crystal structure of poly(ADP-ribose) glycohydrolase (PARG) T267R mutant from Deinococcus radiodurans in complex with ADP-ribose
Classification: HYDROLASE
Source organism: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.594 Å
Deposited: 2018-02-23
Authors: Cho, C.C., Hsu, C.H.
PDB entry 5zdh: CryoEM structure of ETEC Pilotin-Secretin AspS-GspD complex
Classification: PROTEIN TRANSPORT
Source organism: Escherichia coli O78:H11 (strain H10407 / ETEC)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2018-02-23
Authors: Yin, M., Yan, Z., Li, X.
PDB entry 5zdi: Crystal structure of CsaA chaperone protein from picrophilus torridus
Classification: CHAPERONE
Source organism: Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2018-02-23
Authors: Kumari, S., Sharma, A., Goel, M.
PDB entry 5zdk: Crystal Structure Analysis of TtQRS in complex with ATP
Classification: LIGASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å
Deposited: 2018-02-23
Authors: Mutharasappan, N., Jain, V., Sharma, A., Manickam, Y., Jeyaraman, J.
PDB entry 5zdl: Crystal Structure Analysis of TtQRS in co-crystallised with ATP
Classification: LIGASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2018-02-23
Authors: Mutharasappan, N., Jain, V., Sharma, A., Manickam, Y., Jeyaraman, J.
PDB entry 5zdm: The ligand-free structure of FomD
Classification: HYDROLASE
Source organism: Streptomyces fradiae
Experimental method: X-RAY DIFFRACTION
Resolution: 1.38 Å
Deposited: 2018-02-23
Authors: Sato, S., Miyanaga, A., Kudo, F., Eguchi, T.
PDB entry 5zdn: The complex structure of FomD with CDP
Classification: HYDROLASE
Source organism: Streptomyces fradiae
Experimental method: X-RAY DIFFRACTION
Resolution: 2.02 Å
Deposited: 2018-02-23
Authors: Sato, S., Miyanaga, A., Kudo, F., Eguchi, T.
PDB entry 5zdo: Crystal Structure Analysis of TtQRS in co-crystallised with ATP
Classification: LIGASE
Source organism: Thermus thermophilus HB8
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2018-02-23
Authors: Mutharasappan, N., Jain, V., Sharma, A., Manickam, Y., Jeyaraman, J.
PDB entry 5zdp: Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with ferulenol
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.71 Å
Deposited: 2018-02-23
Authors: Shiba, T., Inaoka, D.K., Takahashi, G., Tsuge, C., Kido, Y., Young, L., Ueda, S., Balogun, E.O., Nara, T., Honma, T., Tanaka, A., Inoue, M., Saimoto, H., Harada, S., Moore, A.L., Kita, K.
PDB entry 5zdq: Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with COLLETOCHLORIN B
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2018-02-23
Authors: Shiba, T., Inaoka, D.K., Takahashi, G., Tsuge, C., Kido, Y., Young, L., Ueda, S., Balogun, E.O., Nara, T., Honma, T., Tanaka, A., Inoue, M., Saimoto, H., Harada, S., Moore, A.L., Kita, K.
PDB entry 5zdr: Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with ascofuranone derivative
Classification: MEMBRANE PROTEIN
Source organism: Trypanosoma brucei brucei
Experimental method: X-RAY DIFFRACTION
Resolution: 2.59 Å
Deposited: 2018-02-23
Authors: Shiba, T., Inaoka, D.K., Takahashi, G., Tsuge, C., Kido, Y., Young, L., Ueda, S., Balogun, E.O., Nara, T., Honma, T., Tanaka, A., Inoue, M., Saimoto, H., Harada, S., Moore, A.L., Kita, K.
PDB entry 5zds: Crystal structure of the second PDZ domain of Frmpd2
Classification: SIGNALING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2018-02-24
Authors: Lu, X., Wang, X.F.
PDB entry 5zdz: Hairpin Forming Complex, RAG1/2-Nicked 12RSS/23RSS complex in Ca2+
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2018-02-25
Authors: Kim, M.S., Chuenchor, W., Chen, X., Gellert, M., Yang, W.
PDB entry 5ze0: Hairpin Forming Complex, RAG1/2-Nicked(with Dideoxy) 12RSS/23RSS complex in Mg2+
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2018-02-25
Authors: Kim, M.S., Chuenchor, W., Chen, X., Gellert, M., Yang, W.
PDB entry 5ze1: Hairpin Forming Complex, RAG1/2-Nicked 12RSS/23RSS complex in 2mM Mn2+ for 10 min at 4'C
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2018-02-25
Authors: Kim, M.S., Chuenchor, W., Chen, X., Gellert, M., Yang, W.
PDB entry 5ze2: Hairpin Complex, RAG1/2-hairpin 12RSS/23RSS complex in 5mM Mn2+ for 2 min at 4'C
Classification: DNA BINDING PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2018-02-25
Authors: Kim, M.S., Chuenchor, W., Chen, X., Gellert, M., Yang, W.
PDB entry 5ze3: Crystal structure of human lysyl oxidase-like 2 (hLOXL2) in a precursor state
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-02-25
Authors: Zhang, X., Liu, M.
PDB entry 5ze4: The structure of holo- structure of DHAD complex with [2Fe-2S] cluster
Classification: LYASE
Source organism: Arabidopsis thaliana
Experimental method: X-RAY DIFFRACTION
Resolution: 2.11 Å
Deposited: 2018-02-26
Authors: Zhou, J., Zang, X., Tang, Y., Yan, Y., Gan, J., Wu, L.
PDB entry 5ze6: CRYSTAL STRUCTURE OF OCTAPRENYL PYROPHOSPHATE SYNTHASE FROM ESCHERICHIA COLI WITH BPH-981
Classification: TRANSFERASE/INHIBITOR
Source organism: Escherichia coli K-12
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2018-02-26
Authors: Han, X., Liu, W.D., Zheng, Y.Y., Ko, T.P., Chen, C.C., Guo, R.T.
PDB entry 5ze7: UDP Glucose alpha tetrahydrobiopterin glycosyltransferase from Synechococcus species PCC 7942 - apo form
Classification: TRANSFERASE
Source organism: Synechococcus elongatus (strain PCC 7942)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.99 Å
Deposited: 2018-02-27
Authors: Killivalavan, A., Lee, K.H.
PDB entry 5ze8: Crystal structure of a penta-heme cytochrome c552 from Thermochromatium tepidum
Classification: PHOTOSYNTHESIS
Source organism: Thermochromatium tepidum
Experimental method: X-RAY DIFFRACTION
Resolution: 1.6 Å
Deposited: 2018-02-27
Authors: Yu, L.-J., Chen, J.-H., Shen, J.-R.
PDB entry 5ze9: Crystal structure of AMP-PNP bound mutant A3B3 complex from Enterococcus hirae V-ATPase
Classification: HYDROLASE
Source organism: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.102 Å
Deposited: 2018-02-27
Authors: Maruyama, S., Suzuki, K., Sasaki, H., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.
PDB entry 5zea: Crystal structure of the nucleotide-free mutant A3B3
Classification: HYDROLASE
Source organism: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.384 Å
Deposited: 2018-02-27
Authors: Maruyama, S., Suzuki, K., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.
PDB entry 5zeb: M. Smegmatis P/P state 70S ribosome structure
Classification: RIBOSOME
Source organism: Escherichia coli; Mycobacterium smegmatis str. MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2018-02-27
Authors: Mishra, S., Ahmed, T., Tyagi, A., Shi, J., Bhushan, S.
PDB entry 5zec: Crystal structure of Kluyveromyces polyspora ADH (KpADH) mutant (Q136N/F161V/S196G/E214G/S237C)
Classification: ISOMERASE
Source organism: Vanderwaltozyma polyspora DSM 70294
Experimental method: X-RAY DIFFRACTION
Resolution: 1.779 Å
Deposited: 2018-02-27
Authors: Wang, Y., ZHou, J.Y., Hou, X.D., Xu, G.C., Rao, Y.J., Wu, L., Zhou, J.H., Ni, Y.
PDB entry 5zed: Crystal structure of Kluyveromyces polyspora ADH (KpADH) mutant (E214V/T215S)
Classification: ISOMERASE
Source organism: Vanderwaltozyma polyspora DSM 70294
Experimental method: X-RAY DIFFRACTION
Resolution: 2.199 Å
Deposited: 2018-02-27
Authors: Wang, Y., Zhou, J.Y., Hou, X.D., Xu, G.C., Wu, L., Rao, Y.J., ZHou, J.H., Ni, Y.
PDB entry 5zee: Crystal structure of Entamoeba histolytica Arginase in complex with N(omega)-hydroxy-L-arginine (NOHA) at 1.74 A
Classification: HYDROLASE/INHIBITOR
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.74 Å
Deposited: 2018-02-27
Authors: Malik, A., Dalal, V., Ankri, S., Tomar, S.
PDB entry 5zef: Crystal structure of Entamoeba histolytica Arginase in complex with L- Norvaline at 2.01 A
Classification: HYDROLASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.01 Å
Deposited: 2018-02-27
Authors: Malik, A., Dalal, V., Ankri, S., Tomar, S.
PDB entry 5zeg: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2018-02-27
Authors: Kanazawa, H., Baba, F., Koganei, M., Kondo, J.
PDB entry 5zeh: Crystal structure of Entamoeba histolytica Arginase in complex with L- Ornithine at 2.35 A
Classification: HYDROLASE
Source organism: Entamoeba histolytica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2018-02-27
Authors: Malik, A., Dalal, V., Ankri, S., Tomar, S.
PDB entry 5zei: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2018-02-27
Authors: Kanazawa, H., Baba, F., Koganei, M., Kondo, J.
PDB entry 5zej: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å
Deposited: 2018-02-27
Authors: Kanazawa, H., Baba, F., Koganei, M., Kondo, J.
PDB entry 5zem: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin
Classification: RNA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.103 Å
Deposited: 2018-02-27
Authors: Kanazawa, H., Baba, F., Koganei, M., Kondo, J.
PDB entry 5zen: Crystal structure of human topoisomerase II beta in complex with DNA: a new quaternary conformation showing opening of the protein-linked DNA-gate
Classification: ISOMERASE/DNA
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å
Deposited: 2018-02-27
Authors: Chen, S.F., Wang, Y.R., Chan, N.L.
PDB entry 5zeo: X-ray structure of sperm whale V21C/V66C/F46S myoglobin mutant with an intramolecular disulfide bond
Classification: OXYGEN TRANSPORT
Source organism: Physeter catodon
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2018-02-27
Authors: Yuan, H.
PDB entry 5zep: M. smegmatis hibernating state 70S ribosome structure
Classification: RIBOSOME
Source organism: Escherichia coli; Mycobacterium smegmatis str. MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2018-02-27
Authors: Mishra, S., Ahmed, T., Tyagi, A., Shi, J., Bhushan, S.
PDB entry 5zeq: Carboxypeptidase B in complex with DD28
Classification: HYDROLASE/INHIBITOR
Source organism: Sus scrofa
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2018-02-27
Authors: Itoh, T., Yoshimoto, N., Yamamoto, K.
PDB entry 5zer: UDP Glucose alpha tetrahydrobiopterin glycosyltransferase from Synechococcus species PCC 7942 - BH2 complex form
Classification: TRANSFERASE
Source organism: Synechococcus elongatus PCC 7942
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2018-02-27
Authors: Killivalavan, A., Lee, K.H.
PDB entry 5zes: UDP Glucose alpha tetrahydrobiopterin glycosyltransferase from Synechococcus species PCC 7942 - UDP complex
Classification: TRANSFERASE
Source organism: Synechococcus elongatus (strain PCC 7942)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.03 Å
Deposited: 2018-02-27
Authors: Killivalavan, A., Lee, K.H.
PDB entry 5zet: M. smegmatis P/P state 50S ribosomal subunit
Classification: RIBOSOME
Source organism: Mycobacterium smegmatis str. MC2 155
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2018-02-28
Authors: Mishra, S., Ahmed, T., Tyagi, A., Shi, J., Bhushan, S.
PDB entry 5zeu: M. smegmatis P/P state 30S ribosomal subunit
Classification: RIBOSOME
Source organism: Escherichia coli; Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å
Deposited: 2018-02-28
Authors: Mishra, S., Ahmed, T., Tyagi, A., Shi, J., Bhushan, S.
PDB entry 5zev: Solution structure of G-quadruplex formed in vegfr-2 proximal promoter sequence
Classification: DNA
Experimental method: SOLUTION NMR
Deposited: 2018-02-28
Authors: Liu, Y., Lan, W.X.
PDB entry 5zew: A ubiquitin-like protein from the hyperthermophilic archaea Caldiarchaeum subterraneum
Classification: STRUCTURAL PROTEIN
Source organism: Candidatus Caldiarchaeum subterraneum
Experimental method: SOLUTION NMR
Deposited: 2018-02-28
Authors: Mi, J., Ye, K.Q.
PDB entry 5zey: M. smegmatis Trans-translation state 70S ribosome
Classification: RNA BINDING PROTEIN/RNA
Source organism: Escherichia coli; Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Experimental method: ELECTRON MICROSCOPY
Resolution: 12.5 Å
Deposited: 2018-02-28
Authors: Mishra, S., Ahmed, T., Tyagi, A., Shi, J., Bhushan, S.
PDB entry 5zf0: X-ray Structure of the Electron Transfer Complex between Ferredoxin and Photosystem I
Classification: PHOTOSYNTHESIS/ELECTRON TRANSPORT
Source organism: Thermosynechococcus elongatus; Thermosynechococcus elongatus BP-1
Experimental method: X-RAY DIFFRACTION
Resolution: 4.2 Å
Deposited: 2018-03-01
Authors: Kubota-Kawai, H., Mutoh, R., Shinmura, K., Setif, P., Nowaczyk, M., Roegner, M., Ikegami, T., Tanaka, T., Kurisu, G.
PDB entry 5zf1: Molecular structure of a novel 5,10-methylenetetrahydrofolate dehydrogenase from the silkworm, Bombyx mori
Classification: OXIDOREDUCTASE
Source organism: Bombyx mori
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2018-03-02
Authors: Haque, R., Higashiura, A., Nakagawa, A., Yamamoto, K.
PDB entry 5zf2: Crystal structure of Trxlp from Edwardsiella tarda EIB202
Classification: OXIDOREDUCTASE
Source organism: Edwardsiella tarda (strain EIB202)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.98 Å
Deposited: 2018-03-02
Authors: Yang, C., Quan, S.
PDB entry 5zf3: Crystal Structures of Endo-beta-1,4-xylanase II Complexed with Xylotriose
Classification: HYDROLASE
Source organism: Hypocrea jecorina (strain ATCC 56765 / BCRC 32924 / NRRL 11460 / Rut C-30)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.2 Å
Deposited: 2018-03-02
Authors: Zhang, X., Wan, Q., Li, Z.
PDB entry 5zf4: Structure of human dihydroorotate dehydrogenase in complex with 275-10-COOMe
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.66 Å
Deposited: 2018-03-02
Authors: Miyazaki, Y., Inaoka, K.D., Shiba, T., Saimoto, H., Amalia, E., Kido, Y., Sakai, C., Nakamura, M., Moore, L.A., Harada, S., Kita, K.
PDB entry 5zf6: Crystal structure of the dimeric human PNPase
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.796 Å
Deposited: 2018-03-02
Authors: Yuan, H.S., Golzarroshan, B.
PDB entry 5zf7: Structure of human dihydroorotate dehydrogenase in complex with 277-9-OH
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2018-03-02
Authors: Miyazaki, Y., Inaoka, K.D., Shiba, T., Saimoto, H., Amalia, E., Kido, Y., Sakai, C., Nakamura, M., Moore, L.A., Harada, S., Kita, K.
PDB entry 5zf8: Structure of human dihydroorotate dehydrogenase in complex with 277-11-OAc
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2018-03-02
Authors: Miyazaki, Y., Inaoka, K.D., Shiba, T., Saimoto, H., Amalia, E., Kido, Y., Sakai, C., Nakamura, M., Moore, L.A., Harada, S., Kita, K.
PDB entry 5zf9: Structure of human dihydroorotate dehydrogenase in complex with 280-12
Classification: OXIDOREDUCTASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.77 Å
Deposited: 2018-03-02
Authors: Miyazaki, Y., Inaoka, K.D., Shiba, T., Saimoto, H., Amalia, E., Kido, Y., Sakai, C., Nakamura, M., Moore, L.A., Harada, S., Kita, K.