LiteFold/PDB huggingface dataset:
PDB entry 9pqa: Fem-1 homolog B (FEM1B) in complex with VU0432623
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-07-22
Authors: Katinas, J.M., Fesik, S.W.
PDB entry 9pqd: Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-07-22
Authors: Srinivasan, K., Wu, Y., Billesboelle, C., Kim, J.Y., Manglik, A., Shoichet, B.K.
PDB entry 9pqe: Fem-1 homolog B (FEM1B) in complex with VU0412674
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-07-22
Authors: Katinas, J.M., Fesik, S.W.
PDB entry 9pqf: Xray crystal structure of Vientovirus FB Rep endonuclease domain 2-114 with Mg2+ ion
Classification: REPLICATION
Source organism: Human lung-associated vientovirus FB
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-07-22
Authors: Montermoso, S., Gupta, K., Pumroy, R.A., Moiseenkova-Bell, V., Bushman, F.D., Van Duyne, G.D.
PDB entry 9pqg: Co-crystal structure of feline coronavirus UU23 main protease with Ibuzatrelvir
Classification: VIRAL PROTEIN
Source organism: Feline coronavirus UU23
Experimental method: X-RAY DIFFRACTION
Resolution: 2.27 Å
Deposited: 2025-07-22
Authors: Maryam, A., Shaqra, A.M., Iyer, V., Jung, K., Schiffer, C.A.
PDB entry 9pqh: NMR Structure of Ca2+/Calmodulin bound to the GluN1 C0 domain of the NMDA receptor
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2025-07-22
Authors: Bej, A., Ames, J.B.
PDB entry 9pqi: NMR Structure of Ca2+/Calmodulin bound to the GluN2A C0 domain of the NMDA receptor
Classification: METAL BINDING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: SOLUTION NMR
Deposited: 2025-07-22
Authors: Bej, A., Ames, J.B.
PDB entry 9pqj: Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer
Classification: REPLICATION
Source organism: Human lung-associated vientovirus FB
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.36 Å
Deposited: 2025-07-22
Authors: Montermoso, S., Gupta, K., Pumroy, R.A., Moiseenkova-Bell, V., Bushman, F.D., Van Duyne, G.D.
PDB entry 9pqm: Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer with endonuclease domain density
Classification: REPLICATION
Source organism: Human lung-associated vientovirus FB
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å
Deposited: 2025-07-22
Authors: Montermoso, S., Gupta, K., Pumroy, R.A., Moiseenkova-Bell, V., Bushman, F.D., Van Duyne, G.D.
PDB entry 9pqo: Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep pentamer
Classification: REPLICATION
Source organism: Human lung-associated vientovirus FB
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-07-22
Authors: Montermoso, S., Gupta, K., Pumroy, R.A., Moiseenkova-Bell, V., Bushman, F.D., Van Duyne, G.D.
PDB entry 9pqq: Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C1 symmetry
Classification: REPLICATION
Source organism: Human lung-associated vientovirus FB
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.32 Å
Deposited: 2025-07-23
Authors: Montermoso, S., Gupta, K., Pumroy, R.A., Moiseenkova-Bell, V., Bushman, F.D., Van Duyne, G.D.
PDB entry 9pqr: Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C6 symmetry
Classification: REPLICATION
Source organism: Human lung-associated vientovirus FB
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-07-23
Authors: Montermoso, S., Gupta, K., Pumroy, R.A., Moiseenkova-Bell, V., Bushman, F.D., Van Duyne, G.D.
PDB entry 9pqs: Crystal structure of the scFv-1E8b in complex with the synthetic glycoamino acid Pse-Ser
Classification: SUGAR BINDING PROTEIN
Source organism: Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-07-23
Authors: Madiedo Soler, N., Goddard-Borger, E.D.
PDB entry 9pqt: Cryo-EM structure of ADP-bound Vientovirus FB Rep hexamer
Classification: REPLICATION
Source organism: Human lung-associated vientovirus FB
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-23
Authors: Montermoso, S., Gupta, K., Pumroy, R.A., Moiseenkova-Bell, V., Bushman, F.D., Van Duyne, G.D.
PDB entry 9pqv: Crystal structure of C. elegans PUF-3 in complex with RNA II-2
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.92 Å
Deposited: 2025-07-23
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9pqw: Crystal structure of C. elegans PUF-3 in complex with spn-4 RNA
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3 Å
Deposited: 2025-07-23
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9pqx: Structure of M. tuberculosis type-I FAS in the apo state
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-07-23
Authors: Mazhab-Jafari, M.T., Samani, E.K.
PDB entry 9pqy: Structure of ACP domain conjugated with stearic acid and interacting with MPT domain from M. tuberculosis type-I FAS
Classification: BIOSYNTHETIC PROTEIN
Source organism: Mycobacterium tuberculosis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.51 Å
Deposited: 2025-07-23
Authors: Mazhab-Jafari, M.T., Samani, E.K.
PDB entry 9pqz: Structure of MPT domain of S. cerevisiae type-I FAS, thio-esterified to palmitate
Classification: BIOSYNTHETIC PROTEIN
Source organism: Saccharomyces cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.22 Å
Deposited: 2025-07-23
Authors: Samani, E.K., Mazhab-Jafari, M.T.
PDB entry 9pr3: Cryo-EM structure of stabilized H5N1 A/Texas/37/2024 hemagglutinin fused to foldon
Classification: VIRAL PROTEIN
Source organism: Influenza A virus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-07-23
Authors: Dosey, A., King, N.
PDB entry 9pr4: In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.77 Å
Deposited: 2025-07-23
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9pr5: Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å
Deposited: 2025-07-23
Authors: Niu, Q., Vu, S., Zhang, R., Fu, Z., Lishko, P.V.
PDB entry 9pr6: Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-07-23
Authors: Niu, Q., Vu, S., Zhang, R., Fu, Z., Lishko, P.V.
PDB entry 9pr7: Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-07-23
Authors: Niu, Q., Vu, S., Zhang, R., Fu, Z., Lishko, P.V.
PDB entry 9pr8: Crystal Structure of the Clostridiodes difficile CspC-CspA heterodimer.
Classification: SIGNALING PROTEIN
Source organism: Clostridia
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å
Deposited: 2025-07-23
Authors: Heldwein, E.E., Gonzalez-Del Pino, G.L.
PDB entry 9pr9: Crystal structure of the Clostridiodes difficile CspA homodimer
Classification: SIGNALING PROTEIN
Source organism: Clostridia
Experimental method: X-RAY DIFFRACTION
Resolution: 3.26 Å
Deposited: 2025-07-23
Authors: Heldwein, E.E., Gonzalez-Del Pino, G.L.
PDB entry 9pra: In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.83 Å
Deposited: 2025-07-23
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9prb: Crystal structure of the N-terminal domain of the A subunit of the Bacillus cereus GerI germinant receptor
Classification: PROTEIN TRANSPORT
Source organism: Bacillus cereus ATCC 14579
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-07-23
Authors: Li, Y., Hao, B.
PDB entry 9prc: HDAg complex with 86-pRNA, Body1
Classification: VIRUS
Source organism: Hepatitis delta virus; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å
Deposited: 2025-07-23
Authors: Itskanov, S., Lansdon, E.B.
PDB entry 9prd: In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.31 Å
Deposited: 2025-07-23
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9pre: Crystal structure of oxidised E.coli DsbA in complex with propiolic acid
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68 Å
Deposited: 2025-07-24
Authors: Balaji, G.R., Ilyichova, O.V., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9prf: Crystal structure of E.coli DsbA in-complex with analogue 6
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-07-24
Authors: Balaji, G.R., Ilyichova, O.V., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9prg: Crystal structure of E.coli DsbA in-complex with analogue 7
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.65 Å
Deposited: 2025-07-24
Authors: Balaji, G.R., Ilyichova, O.V., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9prh: Crystal structure of E.coli DsbA in-complex with analogue 8
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.08 Å
Deposited: 2025-07-24
Authors: Balaji, G.R., Ilyichova, O.V., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9pri: Crystal structure of oxidised E.coli DsbA in-complex with analogue 9
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.27 Å
Deposited: 2025-07-24
Authors: Balaji, G.R., Ilyichova, O.V., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9prj: Crystal structure of E.coli DsbA in-complex with analogue 13
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.81 Å
Deposited: 2025-07-24
Authors: Balaji, G.R., Ilyichova, O.V., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9prk: Crystal structure of E.coli DsbA in complex with analogue 17
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.76 Å
Deposited: 2025-07-24
Authors: Balaji, G., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9prl: Crystal structure of E.coli DsbA in complex with analogue 18
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-07-24
Authors: Balaji, G.R., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9prm: Crystal structure of E.coli DsbA in complex with analogue 20
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1 Å
Deposited: 2025-07-24
Authors: Balaji, G.R., Tasdan, Y., Akhtar, N., Scanlon, M.J.
PDB entry 9prq: In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Deposited: 2025-07-24
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9prr: X-ray crystal structure of Streptomyces cacaoi PolF in complex with iron and L-isoleucine
Classification: OXIDOREDUCTASE
Source organism: Streptomyces cacaoi
Experimental method: X-RAY DIFFRACTION
Resolution: 2.06 Å
Deposited: 2025-07-24
Authors: Blancas Cortez, J.J., Boal, A.K.
PDB entry 9prs: Cryo-EM structure of human SV2A in complex with Levetiracetam and UCB1244283
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Deposited: 2025-07-24
Authors: Pidathala, S., Dai, Y., Lee, C.H.
PDB entry 9pru: Complex of the 3G8 Fab bound to Fc gamma receptor 3a / CD16a F158 allotype
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.9 Å
Deposited: 2025-07-24
Authors: Barb, A.W., Lanzilotta, W.N., Kremer, P.G.
PDB entry 9prw: Cryo-EM structure of human DNMT3A/3L
Classification: TRANSFERASE
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.66 Å
Deposited: 2025-07-24
Authors: Lu, J., Song, J.
PDB entry 9prx: In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å
Deposited: 2025-07-24
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9pry: HIV-1 CA hexamer from purified viral cores, C1 symmetry
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Deposited: 2025-07-24
Authors: Barros dos Santos, N.F., Ganser-Pornillos, B.K., Pornillos, O.
PDB entry 9prz: HIV-1 CA hexamer from purified viral cores, C6 symmetry
Classification: VIRAL PROTEIN
Source organism: Human immunodeficiency virus 1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å
Deposited: 2025-07-24
Authors: Barros dos Santos, N.F., Ganser-Pornillos, B.K., Pornillos, O.
PDB entry 9ps0: In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-07-24
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9ps1: Cryo-EM structure of NCLX with calcium (class 3a)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å
Deposited: 2025-07-24
Authors: Zhang, J., Feng, L.
PDB entry 9ps2: Cryo-EM structure of NCLX with calcium (class 4a)
Classification: MEMBRANE PROTEIN
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.15 Å
Deposited: 2025-07-24
Authors: Zhang, J., Feng, L.
PDB entry 9ps3: Cryo-EM structure of NCLX at low pH (class 4b)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Deposited: 2025-07-24
Authors: Zhang, J., Feng, L.
PDB entry 9ps4: Cryo-EM structure of NCLX without calcium (class 1)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å
Deposited: 2025-07-24
Authors: Zhang, J., Feng, L.
PDB entry 9ps6: Cryo-EM structure of NCLX without calcium (class 3)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.29 Å
Deposited: 2025-07-24
Authors: Zhang, J., Feng, L.
PDB entry 9ps7: In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Deposited: 2025-07-25
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9ps8: Cryo-EM structure of NCLX with calcium (class 2a)
Classification: MEMBRANE PROTEIN
Source organism: Rattus norvegicus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Deposited: 2025-07-25
Authors: Zhang, J., Feng, L.
PDB entry 9psa: Crystal structure of C. elegans PUF-3 in complex with RNA III-9
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.86 Å
Deposited: 2025-07-25
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9psb: Crystal structure of C. elegans PUF-3 in complex with pos-1 RNA
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å
Deposited: 2025-07-25
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9psc: Crystal structure of C. elegans PUF-3 in complex with pos-1 RNA mut1
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-25
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9pse: In situ MicroED structure of IL-5 activated human eosinophil major basic protein-1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.18 Å
Deposited: 2025-07-25
Authors: Yang, J.E., Bingman, C.A., Mitchell, J., Mosher, D., Wright, E.R.
PDB entry 9psi: In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Deposited: 2025-07-25
Authors: Wang, S., Xiong, Y., Zhang, Y.
PDB entry 9psk: In situ MicroED structure of IL-33 activated human eosinophil major basic protein-1
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: ELECTRON CRYSTALLOGRAPHY
Resolution: 3.18 Å
Deposited: 2025-07-25
Authors: Yang, J.E., Bingman, C.A., Mitchell, J., Mosher, D., Wright, E.R.
PDB entry 9psm: In situ structure of the human mitoribosome in the A/P-P/E state
Classification: RIBOSOME
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-07-25
Authors: Shuhui, W., Yong, X.
PDB entry 9psn: Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies BoWLB-105 and CC12.3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.54 Å
Deposited: 2025-07-25
Authors: Feng, Z., Wilson, I.A.
PDB entry 9pso: Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies BoWLB-622 and CC12.3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.62 Å
Deposited: 2025-07-25
Authors: Feng, Z., Wilson, I.A.
PDB entry 9psp: Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies BoWLB-1173 and CC12.3
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.81 Å
Deposited: 2025-07-25
Authors: Feng, Z., Wilson, I.A.
PDB entry 9pss: IRAK4 in Complex with Compound 3
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.93 Å
Deposited: 2025-07-26
Authors: Ferrao, R.
PDB entry 9pst: IRAK4 in Complex with Compound 5
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.12 Å
Deposited: 2025-07-26
Authors: Ferrao, R.
PDB entry 9psu: IRAK4 in Complex with Compound 12
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.43 Å
Deposited: 2025-07-26
Authors: Ferrao, R.
PDB entry 9psv: Q108K:K40L:T51V:T53S:R58W:Y19W:L117E mutant of hCRBPII bound to fluorophore TD-1V-7
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2025-07-27
Authors: Ghanbarpour, A., Bingam, C., Geiger, J.H.
PDB entry 9psw: Q108K:K40L:T51V:T53S:R58W:Y19W:L117E mutant of hCRBPII bound to fluorophore TD-1V-2
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.61 Å
Deposited: 2025-07-27
Authors: Ghanbarpour, A., Bingham, C., Geiger, J.H.
PDB entry 9psx: Q108K:K40L:T51V:T53S:R58W:Y19W:L117E mutant of hCRBPII bound to fluorophore TD-1V-3
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.29 Å
Deposited: 2025-07-27
Authors: Ghanbarpour, A., Bingham, C., Geiger, J.H.
PDB entry 9psy: Q108K:K40L:T51V:T53S:R58W:Y19W:L117E mutant of hCRBPII bound to fluorophore TD-1V-1
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.62 Å
Deposited: 2025-07-27
Authors: Ghanbarpour, A., Bingham, C., Geiger, J.H.
PDB entry 9pt0: Q108K:K40L:T51V:T53S:R58W:Y19W:L117E mutant of hCRBPII bound to fluorophore TD-1V-8
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.64 Å
Deposited: 2025-07-27
Authors: Ghanbarpour, A., Bingham, C., Geiger, J.H.
PDB entry 9pt1: Q108K:K40L:T51V:T53S:R58W:Y19W:L117E mutant of hCRBPII bound to fluorophore TD-1V-10
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.48 Å
Deposited: 2025-07-27
Authors: Ghanbarpour, A., Bingham, C., Geiger, J.H.
PDB entry 9pt3: Q108K:K40L:T51V:T53S:R58W:Y19W:L117E mutant of hCRBPII bound to fluorophore TD-1V-9
Classification: RETINOL BINDING PROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.79 Å
Deposited: 2025-07-27
Authors: Ghanbarpour, A., Bingham, C., Geiger, J.H.
PDB entry 9ptd: Crystal structure of C. elegans PUF-3
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans
Experimental method: X-RAY DIFFRACTION
Resolution: 3.14 Å
Deposited: 2025-07-28
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9ptg: Crystal structure of C. elegans PUF-3 in complex with pos-1 RNA mut2
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-07-29
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9pti: BASIC PANCREATIC TRYPSIN INHIBITOR (MET 52 OXIDIZED)
Classification: HYDROLASE INHIBITOR
Source organism: Bos taurus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.22 Å
Deposited: 1991-04-08
Authors: Eigenbrot, C., Randal, M., Kossiakoff, A.A.
PDB entry 9ptj: Crystal structure of C. elegans PUF-3 in complex with RNA II-3
Classification: RNA BINDING PROTEIN
Source organism: Caenorhabditis elegans; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-07-29
Authors: Zhang, Y., Hall, T.M.T.
PDB entry 9ptm: Antibody fragment from mAb824 bound to the adhesin protein FimH.
Classification: CELL ADHESION/IMMUNE SYSTEM
Source organism: Escherichia coli; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-07-29
Authors: Hvorecny, K.L., Magala, P., Klevit, R.E., Kollman, J.M.
PDB entry 9ptq: Structure of Acb2 homolog 43 in complex with 3'cADPR
Classification: VIRAL PROTEIN
Source organism: phage metagenome
Experimental method: X-RAY DIFFRACTION
Resolution: 1.56 Å
Deposited: 2025-07-29
Authors: Chang, R.B., Kranzusch, P.J.
PDB entry 9pu1: HRAS complex with UM0140401 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-07-30
Authors: Jo, C., Lavoie, H., Therrien, M., Arya, T.
PDB entry 9pu3: HRAS complex with UM0140692 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-07-30
Authors: Jo, C., Lavoie, H., Therrien, M., Arya, T.
PDB entry 9pu8: HRAS complex with UM0140693 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.4 Å
Deposited: 2025-07-30
Authors: Jo, C., Lavoie, H., Therrien, M., Arya, T.
PDB entry 9pua: L-Biotin-streptavidin binding
Classification: PROTEIN BINDING
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 0.944 Å
Deposited: 2025-07-30
Authors: Whitby, F.G.
PDB entry 9pub: Biotin-streptavidin binding
Classification: PROTEIN BINDING
Source organism: Streptomyces avidinii
Experimental method: X-RAY DIFFRACTION
Resolution: 0.953 Å
Deposited: 2025-07-30
Authors: Whitby, F.G.
PDB entry 9pue: Structure of Alpha Appendage of AP2 bound to the FxDxF motif derived of CCDC32
Classification: ENDOCYTOSIS
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.91 Å
Deposited: 2025-07-30
Authors: Sloan, D.E., Matthews, A.E., Tedamrongwanish, T., Nicely, N.I., Baker, R.W.
PDB entry 9puf: Crystal Structure of N-Phenylalanine Peptoid-modified Collagen Triple Helix (GPX)
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.297 Å
Deposited: 2025-07-30
Authors: Whitby, F.G., Ratnitilakanabhuket, P.
PDB entry 9pug: Crystal Structure of N-nitrobenzyl Peptoid-modified Collagen Triple Helix (GPX)
Classification: STRUCTURAL PROTEIN
Experimental method: X-RAY DIFFRACTION
Resolution: 1.298 Å
Deposited: 2025-07-30
Authors: Whitby, F.G., Ratnitilakanabhuket, P.
PDB entry 9puh: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 11
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-07-31
Authors: Taylor, A.J., Zhao, B., Fesik, S.W.
PDB entry 9puj: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 17
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-31
Authors: Taylor, A.J., Rietz, T., Fesik, S.W.
PDB entry 9puk: Neutralizing monoclonal antibody Fab fragment for human leptin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å
Deposited: 2025-07-31
Authors: Tomchick, D.R., Wynn, R.M., Scherer, P.E.
PDB entry 9pul: HRAS complex with UM0143525 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-07-31
Authors: Jo, C., Lavoie, H., Therrien, M.
PDB entry 9pun: HRAS complex with UM0148697 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å
Deposited: 2025-07-31
Authors: Jo, C., Lavoie, H., Therrien, M.
PDB entry 9puo: Neutralizing monoclonal antibody Fab fragment bound to leptin
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å
Deposited: 2025-07-31
Authors: Tomchick, D.R., Wynn, R.M., Scherer, P.E.
PDB entry 9puq: HRAS complex with UM0152248 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-31
Authors: Jo, C., Lavoie, H., Therrien, M.
PDB entry 9put: HRAS complex with UM0152535 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-31
Authors: Jo, C., Lavoie, H., Therrien, M.
PDB entry 9puy: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 27
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-07-31
Authors: Taylor, A.J., Rietz, T., Fesik, S.W.
PDB entry 9puz: HRAS complex with UM0153030 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-07-31
Authors: Jo, C., Lavoie, H., Therrien, M.
PDB entry 9pv2: Structure of S. aureus GpsB N-terminal domain
Classification: CELL CYCLE
Source organism: Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75 Å
Deposited: 2025-07-31
Authors: Nicely, N.I., Baker, R.W., Bartlett, T.M.
PDB entry 9pv3: 10E8-GT12 immunogen in complex with mouse Fabs SA2911 and W6-10
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.95 Å
Deposited: 2025-08-01
Authors: Huang, J., Ward, A.B.
PDB entry 9pv4: MPER-GT12 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Homo sapiens; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å
Deposited: 2025-08-01
Authors: Huang, J., Ward, A.B.
PDB entry 9pv5: 10E8-GT10.2 immunogen in complex with Rhesus macaque Fab W3-05 and mouse Fab W6-03
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Source organism: Macaca mulatta; Mus musculus; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å
Deposited: 2025-08-01
Authors: Huang, J., Ward, A.B.
PDB entry 9pv6: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 37
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.45 Å
Deposited: 2025-08-01
Authors: Taylor, A.J., Fesik, S.W.
PDB entry 9pv9: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 46
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-01
Authors: Taylor, A.J., Fesik, S.W.
PDB entry 9pve: HRAS complex with UM0152533 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-01
Authors: Jo, C., Lavoie, H., Therrien, M.
PDB entry 9pvf: KRAS complex with UM0152533 compound
Classification: HYDROLASE/INHIBITOR
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2 Å
Deposited: 2025-08-01
Authors: Jo, C., Lavoie, H., Therrien, M.
PDB entry 9pvg: Co-crystal structure of two CCM2 PTB domains bound to a KRIT1 peptide encompassing NPxF2 and NPxF3
Classification: SIGNALING PROTEIN
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-08-01
Authors: Fisher, O.S., Boggon, T.J.
PDB entry 9pvi: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 47
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-01
Authors: Taylor, A.J., Fesik, S.W.
PDB entry 9pvk: SARS-CoV-2 Papain-like Protease (PLpro) in complex with Fragment 53
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-01
Authors: Taylor, A.J., Fesik, S.W.
PDB entry 9pvp: Cryo-EM structure of receptor tyrosine kinase ROS1 extracellular domain
Classification: TRANSFERASE
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.57 Å
Deposited: 2025-08-03
Authors: Li, H., Klein, D.
PDB entry 9pvy: Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I L90P amyloidosis patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.15 Å
Deposited: 2025-08-04
Authors: Nguyen, B.A., Saelices, L.
PDB entry 9pvz: Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å
Deposited: 2025-08-04
Authors: Nguyen, B.A., Saelices, L.
PDB entry 9pw3: Cryo-EM structure of renal amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
Classification: PROTEIN FIBRIL
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Deposited: 2025-08-04
Authors: Nguyen, B.A., Saelices, L.
PDB entry 9pw4: Structure of V30V4 in complex with SARS-CoV-2 spike
Classification: VIRAL PROTEIN
Source organism: Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Deposited: 2025-08-04
Authors: Wang, Y.J., Kibria, G., Wesemann, D., Chen, B.
PDB entry 9pw6: Myeloid cell leukemia-1 (Mcl-1) complexed with compound 8
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.068 Å
Deposited: 2025-08-04
Authors: Zhao, B., Fesik, S.W.
PDB entry 9pw7: Myeloid cell leukemia-1 (Mcl-1) complexed with compound 13
Classification: APOPTOSIS
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.95 Å
Deposited: 2025-08-04
Authors: Zhao, B., Fesik, S.W.
PDB entry 9pw8: Fem-1 homolog B (FEM1B) in complex with VU0417412
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å
Deposited: 2025-08-04
Authors: Katinas, J.M., Fesik, S.W.
PDB entry 9pwa: Closed AP-2 clathrin adaptor complex in solution
Classification: ENDOCYTOSIS
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å
Deposited: 2025-08-04
Authors: Baker, R.W., Kikkawa, M., Sloan, D.E., Yanagisawa, H.
PDB entry 9pwb: Structure of AP-2 bound to the dileucine motif of CCDC32; combined map
Classification: ENDOCYTOSIS
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Deposited: 2025-08-04
Authors: Baker, R.W., Kikkawa, M., Sloan, D.E., Yanagisawa, H.
PDB entry 9pwc: Composite structure of AP-2 bound to the dileucine motif and WxxPhi motif of CCDC32
Classification: ENDOCYTOSIS
Source organism: Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-08-04
Authors: Baker, R.W., Kikkawa, M., Sloan, D.E., Yanagisawa, H.
PDB entry 9pwj: Fem-1 homolog B (FEM1B) in complex with VU0081201
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-08-04
Authors: Katinas, J.M., Fesik, S.W.
PDB entry 9pwk: P21A Mutant of E. coli Dihydrofolate Reductase Complexed with Folate and Nicotinamide Adenine Dinucleotide Phosphate (oxidized form)
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 1.51 Å
Deposited: 2025-08-04
Authors: Fried, S.D.E., Mathews, I.I., Boxer, S.G.
PDB entry 9pwm: Dihydrofolate Reductase Complexed with Folate and Nicotinamide Adenine Dinucleotide Phosphate (Oxidized Form)
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 0.89 Å
Deposited: 2025-08-04
Authors: Fried, S.D.E., Mathews, I.I., Boxer, S.G.
PDB entry 9pwn: Crystal structure of Fabs 7411 in complex with TREM2 peptide
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-04
Authors: Arndt, J.W., Chao, Q., Cooke, H.A., Almeida, A.D.S.
PDB entry 9pwo: Pig Ryanodine Receptor 1 R615C Mutant: Atorvastatin Bound Open Conformation
Classification: TRANSPORT PROTEIN
Source organism: Homo sapiens; Sus scrofa
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å
Deposited: 2025-08-04
Authors: Molinarolo, S.M., Van Petegem, F.
PDB entry 9pwq: Cryo-EM structure of receptor tyrosine kinase ROS1 extracellular domain in complex with NELL2
Classification: TRANSFERASE/SIGNALING PROTEIN
Source organism: Homo sapiens; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.45 Å
Deposited: 2025-08-05
Authors: Li, H., Klein, D.
PDB entry 9px5: Crystal structure of Fab 7268 in complex with MBP-TREM2 Ig domain fusion
Classification: IMMUNE SYSTEM
Source organism: Escherichia coli; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å
Deposited: 2025-08-05
Authors: Arndt, J.W., Chao, Q., Cooke, H.A., Almeida, A.D.S.
PDB entry 9pxb: Hamster Scap/Insig-2 complex with cholesterol and bound Fab4G10
Classification: MEMBRANE PROTEIN
Source organism: Cricetulus griseus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-08-05
Authors: Williams, B.C., Kober, D.L., Bai, X., Radhakrishnan, A., Rosenbaum, D.M.
PDB entry 9pxc: Y100F Mutant of E. coli Dihydrofolate Reductase Complexed with NADP+ (oxidized form)
Classification: OXIDOREDUCTASE
Source organism: Escherichia coli
Experimental method: X-RAY DIFFRACTION
Resolution: 2.37 Å
Deposited: 2025-08-05
Authors: Fried, S.D.E., Mathews, I.I., Boxer, S.G.
PDB entry 9pxf: Ammonia monooxygenase in native membranes from N. briensis
Classification: OXIDOREDUCTASE
Source organism: Nitrosospira briensis
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.58 Å
Deposited: 2025-08-05
Authors: Frank, F.J., Rosenzweig, A.C.
PDB entry 9pxo: Fem-1 homolog B (FEM1B) in complex with VU0023775
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å
Deposited: 2025-08-06
Authors: Katinas, J.M., Fesik, S.W.
PDB entry 9pxp: Fem-1 homolog B (FEM1B) in complex with VU0416476
Classification: LIGASE
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-08-06
Authors: Katinas, J.M., Fesik, S.W.
PDB entry 9pxu: Inactive-state naloxone-mu opioid receptor nanobody6 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å
Deposited: 2025-08-06
Authors: Gati, C., Khan, S., Han, G.W.
PDB entry 9pxv: Nucleotide-free naloxone-mu opioid receptor Gi1 complex
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens; synthetic construct
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Deposited: 2025-08-06
Authors: Gati, C., Han, G.W., Khan, S.
PDB entry 9pxw: Latent-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å
Deposited: 2025-08-06
Authors: Gati, C., Han, G.W., Khan, S.
PDB entry 9pxx: Unlatched-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-08-06
Authors: Gati, C., Han, G.W., Khan, S.
PDB entry 9pxy: Primed-state naloxone-mu opioid receptor-Gi GDPbS complex (rebound)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-08-06
Authors: Gati, C., Han, G.W., Khan, S.
PDB entry 9pxz: PRMT5 Bound to Compound 6 and MTA
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.47 Å
Deposited: 2025-08-06
Authors: Ferrao, R.
PDB entry 9py0: PRMT5 Bound to Compound 12 and MTA
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.36 Å
Deposited: 2025-08-06
Authors: Ferrao, R.
PDB entry 9py1: PRMT5 Bound to Compound 8 and MTA
Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.04 Å
Deposited: 2025-08-06
Authors: Ferrao, R.
PDB entry 9py2: Engaged-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.16 Å
Deposited: 2025-08-06
Authors: Gati, C., Han, G.W., Khan, S.
PDB entry 9py3: Unlatched-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound)
Classification: MEMBRANE PROTEIN
Source organism: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å
Deposited: 2025-08-06
Authors: Gati, C., Han, G.W., Khan, S.
PDB entry 9py4: Primed-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound)
Classification: MEMBRANE PROTEIN
Source organism: Escherichia coli; Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.78 Å
Deposited: 2025-08-06
Authors: Gati, C., Han, G.W., Khan, S.
PDB entry 9py6: Hamster Scap/Insig-2 complex L1-L7 domain/Fab4G10 focused map
Classification: MEMBRANE PROTEIN
Source organism: Cricetulus griseus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-08-07
Authors: Williams, B.C., Kober, D.L., Bai, X., Radhakrishnan, A., Rosenbaum, D.M.
PDB entry 9py7: Hamster Scap L1-L7 domain/Fab4G10 focused map
Classification: MEMBRANE PROTEIN
Source organism: Cricetulus griseus; Mus musculus
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å
Deposited: 2025-08-07
Authors: Williams, B.C., Kober, D.L., Bai, X., Radhakrishnan, A., Rosenbaum, D.M.
PDB entry 9pyc: Cryo-EM structure of EF-G and RaiA simultaneously bound to an E. coli ribosome imaged in a cell lysate
Classification: RIBOSOMAL PROTEIN
Source organism: Escherichia coli K-12
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å
Deposited: 2025-08-07
Authors: May, M.B., Davis, J.H.
PDB entry 9pyf: uPA Inhibitory Fab AB2 Complex
Classification: PROTEIN BINDING
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-08-07
Authors: Anderson, K.J., Bohn, M.F.
PDB entry 9pyj: Crystal Structure of ZETA_2-Apo
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 3.49 Å
Deposited: 2025-08-07
Authors: Bera, A.K., Kim, D., Woodbury, S., Kang, A., Baker, D.
PDB entry 9pyl: Crystal structure of Zn(II)-bound ZETA_2
Classification: DE NOVO PROTEIN
Source organism: synthetic construct
Experimental method: X-RAY DIFFRACTION
Resolution: 2.07 Å
Deposited: 2025-08-07
Authors: Bera, A.K., Kim, D., Woodbury, S., Kang, A., Baker, D.
PDB entry 9pym: Cryo-EM structure of the isethionate TRAP transporter IseQM from Oleidesulfovibrio alaskensis with bound isethionate
Classification: TRANSPORT PROTEIN
Source organism: Helicobacter pylori; Oleidesulfovibrio alaskensis G20
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Deposited: 2025-08-07
Authors: Newton-Vesty, M.C., Davies, J.S., Dobson, R.C.J.
PDB entry 9pyr: Importin alpha 2 in complex with Haliotid herpesvirus 1 large tegument protein NLS region
Classification: TRANSPORT PROTEIN
Source organism: Mus musculus; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å
Deposited: 2025-08-08
Authors: Nath, B.K., Swarbrick, C.M.D., Forwood, J.K., Sarker, S.
PDB entry 9pys: NMR RDC refinement of the helical domain of the SARS-CoV-2 monomeric Main Protease (MPROH41Q,10-306)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: SOLUTION NMR
Deposited: 2025-08-08
Authors: Smith, M.J., Ying, J., Shen, Y., Louis, J.M., Bax, A.
PDB entry 9pyt: NMR RDC refinement of the catalytic domain of the SARS-CoV-2 monomeric Main Protease (MPROH41Q,10-306)
Classification: HYDROLASE
Source organism: Severe acute respiratory syndrome coronavirus 2
Experimental method: SOLUTION NMR
Deposited: 2025-08-08
Authors: Smith, M.J., Ying, J., Shen, Y., Louis, J.M., Bax, A.
PDB entry 9pyv: Crystal structure of Uracil-DNA glycosylase from Burkholderia thailandensis
Classification: HYDROLASE
Source organism: Burkholderia thailandensis E264
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-08-08
Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
PDB entry 9pyw: SARS-CoV-2 nsp7, nsp8 and nsp12 bound to a primer-template pair with incorporated ara-UMP
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-08-08
Authors: Xiao, Z., Kirchdeorfer, R.N.
PDB entry 9pyx: Crystal structure of WT HIV-1 protease (NL4-3) with inhibitor J02-30
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.73 Å
Deposited: 2025-08-08
Authors: Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9pyz: SARS-CoV-2 core polymerase complex bound to RNA, araUMP, and UTP
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å
Deposited: 2025-08-08
Authors: Xiao, Z., Kirchdeorfer, R.N.
PDB entry 9pz0: SARS-CoV-2 core polymerase complex with two UTP incorporation
Classification: VIRAL PROTEIN
Source organism: Severe acute respiratory syndrome coronavirus 2; SYNTHETIC CONSTRUCT
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å
Deposited: 2025-08-08
Authors: Xiao, Z., Kirchdeorfer, R.N.
PDB entry 9pz1: Crystal structure of WT HIV-1 protease (NL4-3) with inhibitor LR4-43
Classification: HYDROLASE/INHIBITOR
Source organism: Human immunodeficiency virus 1
Experimental method: X-RAY DIFFRACTION
Resolution: 1.8 Å
Deposited: 2025-08-08
Authors: Kaur, J., Shaqra, A.M., Schiffer, C.A.
PDB entry 9pz5: Native anti-NANP Fab
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.39 Å
Deposited: 2025-08-08
Authors: Young, T.
PDB entry 9pz6: Anti-NANP Fab with G112T light chain mutation
Classification: IMMUNE SYSTEM
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.7 Å
Deposited: 2025-08-08
Authors: Young, T.
PDB entry 9pz7: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.504 Å
Deposited: 2025-08-08
Authors: Werther, R., Stoddard, B.L.
PDB entry 9pzf: Structure of KRAS G12C bound to Compound 4
Classification: ONCOPROTEIN
Source organism: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 1.84 Å
Deposited: 2025-08-11
Authors: Kiefer, J.R., Wang, W., Oh, A., Yu, C.
PDB entry 9pzg: Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit
Classification: RIBOSOME
Source organism: Escherichia coli; Escherichia coli BW25113
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.42 Å
Deposited: 2025-08-11
Authors: Barmada, M.I., Conn, G.L.
PDB entry 9pzh: One of a series of engineered variants of I-OnuI meganuclease targeting altered DNA target sequence
Classification: DNA BINDING PROTEIN/DNA
Source organism: synthetic construct; SYNTHETIC CONSTRUCT
Experimental method: X-RAY DIFFRACTION
Resolution: 2.356 Å
Deposited: 2025-08-11
Authors: Werther, R., Stoddard, B.L.
PDB entry 9pzi: Crystal Structure of synthetic antibody COP-2 in complex with the C-terminal domain of Clostridium perfringens enterotoxin
Classification: IMMUNE SYSTEM/TOXIN
Source organism: Clostridium perfringens; Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å
Deposited: 2025-08-11
Authors: Vecchio, A.J., Ogbu, C.P., Kapoor, S.
PDB entry 9pzj: Benzylsuccinate synthase alpha-beta-gamma complex with bound toluene and fumarate
Classification: LYASE
Source organism: Thauera aromatica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å
Deposited: 2025-08-11
Authors: Liu, J., Andorfer, M.C.
PDB entry 9pzl: Pyruvate phosphate dikinase in complex with AMP-PNP and sulfate ions
Classification: TRANSFERASE
Source organism: Clostridium symbiosum
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å
Deposited: 2025-08-11
Authors: Lim, K., Herzberg, O.
PDB entry 9pzm: Augmin V junction with NEDD1 (WD)
Classification: PLANT PROTEIN
Source organism: Arabidopsis thaliana
Experimental method: ELECTRON MICROSCOPY
Resolution: 8 Å
Deposited: 2025-08-11
Authors: Ashaduzzaman, M., Al-Bassam, J.